Query T0584 3NF2, Streptomyces coelicolor, 352 residues
Match_columns 352
No_of_seqs 184 out of 2359
Neff 7.1
Searched_HMMs 11830
Date Sun Jun 13 15:31:11 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0584.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0584.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00348 polyprenyl_synt: Poly 100.0 0 0 424.0 22.3 255 41-308 1-259 (260)
2 PF07307 HEPPP_synt_1: Heptapr 98.2 2.4E-05 2.1E-09 46.7 13.7 120 60-190 17-139 (212)
3 PF00494 SQS_PSY: Squalene/phy 95.8 0.029 2.5E-06 28.7 8.5 137 148-323 89-226 (267)
4 PF01040 UbiA: UbiA prenyltran 81.7 1 8.7E-05 19.7 16.3 158 75-258 24-190 (258)
5 PF06783 UPF0239: Uncharacteri 73.5 1.3 0.00011 19.2 3.3 30 201-230 13-42 (85)
6 PF10776 DUF2600: Protein of u 54.4 4.2 0.00036 16.1 5.3 30 302-331 254-283 (330)
7 PF06304 DUF1048: Protein of u 53.8 4.3 0.00036 16.1 3.6 24 218-241 45-68 (103)
8 PF03936 Terpene_synth_C: Terp 34.1 8.9 0.00075 14.2 20.3 85 144-229 138-227 (270)
9 PF04703 FaeA: FaeA-like prote 27.0 6.1 0.00051 15.2 0.3 46 59-112 15-60 (62)
10 PF11351 DUF3154: Protein of u 11.0 29 0.0024 11.3 6.1 14 55-68 59-72 (123)
No 1
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown , , , , that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 2j1p_B 2j1o_A 1rqj_B 1rqi_A 2for_A 1wl0_A 1wl3_B 1v4e_A 1vg4_A 1v4i_A ....
Probab=100.00 E-value=0 Score=424.01 Aligned_cols=255 Identities=40% Similarity=0.561 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHH
Q ss_conf 77786546651587217899999999973999789999999999999999752787788655557872100046427899
Q T0584 41 WIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAIL 120 (352)
Q Consensus 41 ~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail 120 (352)
|+++ .+|...+||||+||.|++++++++|++++.++++|+++|++|+||||||||+|+|++|||+||+|.+||+..|||
T Consensus 1 ~~~~-~~~~~~~~GKr~Rp~l~~~~~~~~~~~~~~~~~~a~aiEliH~asLIhDDI~D~s~~RRG~pt~~~~~G~~~Ail 79 (260)
T PF00348_consen 1 WLEA-ARYYILSGGKRIRPLLVLLAAEALGGDPEDALPLAAAIELIHNASLIHDDIIDNSDLRRGKPTAHKKFGNAIAIL 79 (260)
T ss_dssp HHHH-HHHHHHT---HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SBETTEBTHHHHSTTHHHHH
T ss_pred CHHH-HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9398-998856798649999999999994999899999999999999999986256327865679987433355146777
Q ss_pred HHHHHHHHHHHHHHHCC--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999997179--9--0079999999999998778877887642689999899999998652689999999999
Q T0584 121 VGDALFALANEVLLELG--T--VEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGA 196 (352)
Q Consensus 121 ~Gd~l~~~a~~~l~~~~--~--~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga 196 (352)
+||+|++.+++.++.++ . ....++.+.+.........||..|+.+... +.++++|++|+++|||+||++||++|+
T Consensus 80 ~gd~Ll~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i~~~KTg~lf~~~~~lga 158 (260)
T PF00348_consen 80 AGDYLLALAFELLARLGNFNPDARVLRILELFIMMLIEGEIGQLLDLANERK-DITEEEYLEIIELKTGSLFALACQLGA 158 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST-TTCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5079999999999984344727999999999999874335999873543143-240999999999754999999999888
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 86399998999999998899999999998875137845616762323340567789999986389678999999753100
Q T0584 197 VLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAK 276 (352)
Q Consensus 197 ~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~ 276 (352)
+++|++++..+.+.+||+++|++|||+||++|++++++.+||++|+||++||+|||++++++..+++.+++......
T Consensus 159 ilag~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gK~~~~Dl~~gk~T~p~~~al~~~~~~~~~~l~~~~~--- 235 (260)
T PF00348_consen 159 ILAGADEEQIEALEEFGRNLGIAFQIRDDLLDLFGDEEKLGKPVGSDLREGKPTLPVLYALEEASEEQRELLQENYD--- 235 (260)
T ss_dssp HHTTSGHHHHHHHHHHHHH---HHHHHHHHHHHHSCTTTTT--TTHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHH---
T ss_conf 61486247899999998899999987898764148877618862017765973699999998595999999999883---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 03445689899999999998649089999999
Q T0584 277 ASDFANFSEEEFAARAALIEEAGGREWTADEA 308 (352)
Q Consensus 277 ~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~ 308 (352)
.+..+...+.+...+++++++..+
T Consensus 236 --------~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 236 --------KEDSEEIAEIVEETKSLEATRDYA 259 (260)
T ss_dssp --------HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf --------713489999999988766887622
No 2
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis .
Probab=98.24 E-value=2.4e-05 Score=46.71 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=81.1
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999739--9978999999999999999975278778865555787210004642789989999999999997179
Q T0584 60 ALAVLSAEVTG--AAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELG 137 (352)
Q Consensus 60 ~L~ll~~~~~g--~~~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~ 137 (352)
.+.++.+-+.+ -.+++.-++..++-++|.|...||.|-+ ...+++...-.+ ...|++|||.-+.-+.++++++
T Consensus 17 ~l~ll~~~l~~~~l~~~~~~~~v~a~~lvq~ALDtHd~V~~-~~~~~~~~~k~R----QLtVLAGDyySalYY~lLA~~~ 91 (212)
T PF07307_consen 17 RLLLLYSMLQEAELPEEEAERYVLAVMLVQIALDTHDEVDE-ANDESEQGSKER----QLTVLAGDYYSALYYYLLAESG 91 (212)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHH----CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999866999878999999999999999988875501-011144678863----5234576887899999998579
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHH
Q ss_conf 90079999999999998778877887642689999899999-998652689999
Q T0584 138 TVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLE-MEGNKTGALLAC 190 (352)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~-~~~~KTa~Lf~~ 190 (352)
.- .+++.+++++..+.+....=-. ....+.++|++ +..-.|+-+...
T Consensus 92 di---~lI~~ls~aI~eiNE~K~~Ly~---~~~~~~e~~~~~~~~ies~L~~~~ 139 (212)
T PF07307_consen 92 DI---SLIRALSEAIKEINEAKISLYQ---KKVESDEEYLESVVTIESALFQKF 139 (212)
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 76---9999999999999999999998---700889999999999999999999
No 3
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure , , . In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 1ezf_B 2zcq_A 2zco_A 2zcp_A 2zcr_A 2zcs_A.
Probab=95.78 E-value=0.029 Score=28.73 Aligned_cols=137 Identities=23% Similarity=0.210 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999987788778876426899998999999986526899999999998639999899999999889999999999887
Q T0584 148 LTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLL 227 (352)
Q Consensus 148 ~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDil 227 (352)
-.+....+.+|...|+... .-.|.+++..-+..-.|+...+.+.+...- ++. +....++.++|+|+|+.|=+.
T Consensus 89 ~~~~l~~li~g~~~Dl~~~--~~~t~~~L~~Y~~~vAg~vg~l~~~i~~~~---~~~--~~~~~~A~~lG~AlqltnilR 161 (267)
T PF00494_consen 89 PKEWLRDLIDGMEMDLEFT--RFETFAELERYCYRVAGTVGLLLLEILGAR---DPD--EAAREAARHLGIALQLTNILR 161 (267)
T ss_dssp HHHHHHHHHHHHCCCCT-S----SSHHHHHHHHHHH------TTHHHHHCT---TSC---HHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCC---CCC--CHHHHHHHHHHHHHHHHHHHH
T ss_conf 4689999999999886348--989999999999998999999999995868---653--139999999999999999999
Q ss_pred HHCCCHHHHCCCHHHH-HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 5137845616762323-340567789999986389678999999753100034456898999999999986490899999
Q T0584 228 GIWGDPDATGKQTWSD-LRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352)
Q Consensus 228 D~~~~~~~~GK~~g~D-l~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~ 306 (352)
|+- .| ...|..-+|.=..-+. +-..+.+ +.. ....+.+.. .+..-.+
T Consensus 162 dv~-----------eD~~~~gR~ylP~~~l~~~-gv~~~~l---~~~--------~~~~~~~~~---------~~~~~~~ 209 (267)
T PF00494_consen 162 DVP-----------EDAAARGRVYLPADELEKH-GVSPEDL---LRG--------RIPSERLRA---------LLRELAE 209 (267)
T ss_dssp CHH-----------HC-CTTT---S-HHHHCCT-TS-HHHC---CCG----------GGHHHHH---------HHHHHHH
T ss_pred HHH-----------HHHHHCCCCCCCHHHHHHH-CCCHHHH---HHC--------CCCCHHHHH---------HHHHHHH
T ss_conf 828-----------8999779805876899981-9899999---642--------269989999---------9999999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999986179
Q T0584 307 EARRQHTIAIEALDAVD 323 (352)
Q Consensus 307 ~~~~~~~~A~~~L~~l~ 323 (352)
.++.+..+|...+..+|
T Consensus 210 ~A~~~~~~a~~~~~~lp 226 (267)
T PF00494_consen 210 RARDHLASAREGIRALP 226 (267)
T ss_dssp HHHCCHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998759
No 4
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The COX10/ctaB/cyoE signature is found in prenyltransferases including bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protoheme IX farnesyltransferase (heme O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) , . These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=81.68 E-value=1 Score=19.71 Aligned_cols=158 Identities=21% Similarity=0.165 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999999999999975278778865555-----787210004642789989999999999997179900799999999
Q T0584 75 VGVPGAVAVELVHNFSLLHDDLMDGDEQRR-----HRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLT 149 (352)
Q Consensus 75 ~~~~~AaavEliH~asLiHDDi~D~s~~RR-----G~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~ 149 (352)
.......++=+++.+.-+-||..|.+.=|+ .||-.......+.+...+-.+...++-+....+.. . -.+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~RPl~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~- 100 (258)
T PF01040_consen 24 LLLLLLLGVFLLQLAVYVLNDYFDYEIDRDNPRKPNRPLPSGRLSPRQALIFALALLVLGLALALFLGPL-A-LWLALL- 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH-H-HHHHHH-
T ss_conf 9999999999999999997278777278434578887014887289999999999999999999860899-9-999999-
Q ss_pred HHHHHHHHHHHHHHHH--CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877887788764--26899998-99999998652689999999999863999-98999999998899999999998
Q T0584 150 KASRSLIDGQAQDISY--EHRDRVSV-EECLEMEGNKTGALLACASSIGAVLGGAD-ERTADTLEKYGYHLGLAFQAVDD 225 (352)
Q Consensus 150 ~~~~~~~~Gq~~dl~~--~~~~~~s~-~~y~~~~~~KTa~Lf~~a~~~ga~lag~~-~~~~~~l~~~G~~lG~afQi~DD 225 (352)
....+ ...-.. .-+ ..+. ++..- +..+......|....+.. ....-.+.-+..-.+..+...+|
T Consensus 101 ----~~~~~-~~Ys~~p~~lK-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (258)
T PF01040_consen 101 ----GILIG-WLYSAPPFRLK-RRPLLGELVV------GLGFGLLPLLGWLAVGGDISPPALLLALIFFLFTFAIIIFND 168 (258)
T ss_pred ----HHHHH-HHHHHHHHHHC-CCCCCHHHHH------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----99999-99862123421-5886009999------999999999999998388867999999899999989888889
Q ss_pred HHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 875137845616762323340567789999986
Q T0584 226 LLGIWGDPDATGKQTWSDLRQRKKSLPVVAALA 258 (352)
Q Consensus 226 ilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~ 258 (352)
+.|.. +|.+.|++|+|+.+...
T Consensus 169 ~~D~~-----------~D~~~g~~Tl~v~~G~~ 190 (258)
T PF01040_consen 169 IRDIE-----------GDRAAGIRTLPVLLGEK 190 (258)
T ss_pred HHHHH-----------HHHHCCCCCHHHHHHHH
T ss_conf 76388-----------79987993129999899
No 5
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=73.46 E-value=1.3 Score=19.19 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999899999999889999999999887513
Q T0584 201 ADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352)
Q Consensus 201 ~~~~~~~~l~~~G~~lG~afQi~DDilD~~ 230 (352)
..+...+.+-+||.++|-.||+.==.--++
T Consensus 13 ~Eed~~~~llRYGLfvGAIFQ~vCI~A~Il 42 (85)
T PF06783_consen 13 PEEDFFETLLRYGLFVGAIFQFVCILAAIL 42 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 841699999999999999999999987213
No 6
>PF10776 DUF2600: Protein of unknown function (DUF2600)
Probab=54.45 E-value=4.2 Score=16.13 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999999999998617999478999
Q T0584 302 EWTADEARRQHTIAIEALDAVDMPDRVRDR 331 (352)
Q Consensus 302 e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~ 331 (352)
+...+.+..++++|.+.+..+|.+.--|-.
T Consensus 254 ~e~~~Rl~~F~~~a~~~~~~Lp~~~FHr~i 283 (330)
T PF10776_consen 254 KEMEERLKHFIEKALESVAKLPYPKFHRLI 283 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999999999999718994179999
No 7
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2o3l_B 2hh6_A 2o4t_A.
Probab=53.84 E-value=4.3 Score=16.07 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCHH
Q ss_conf 999999988751378456167623
Q T0584 218 LAFQAVDDLLGIWGDPDATGKQTW 241 (352)
Q Consensus 218 ~afQi~DDilD~~~~~~~~GK~~g 241 (352)
-..+|.+|++|+|.....-||++.
T Consensus 45 ~~~~il~dildLfEe~aadGk~V~ 68 (103)
T PF06304_consen 45 NMMEILSDILDLFEEAAADGKSVL 68 (103)
T ss_dssp HHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 888899999999999987699625
No 8
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C_10) synthases, sesquiterpene (C_15) synthases and the diterpene (C_20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf . Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT. Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp.L487 the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein .; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3g4d_B 3g4f_A 5eau_A 1hxg_A 1hx9_A 5eat_A 1hxc_A 5eas_A 1hxa_A 2j5c_B ....
Probab=34.07 E-value=8.9 Score=14.22 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHH---HHHHHHHH
Q ss_conf 99999999998778877887642689-999899999998652689999999999863999-98999999---99889999
Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHRD-RVSVEECLEMEGNKTGALLACASSIGAVLGGAD-ERTADTLE---KYGYHLGL 218 (352)
Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~-~~~~~~l~---~~G~~lG~ 218 (352)
....+.+.+.....|...+..|.... -+|.++|+.+-. .|++..-..+.....+.... .+..+.+. .+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~E~~~r~~~~~Ps~~eYl~~R~-~t~g~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 VREYFREAWRDYLEAYLWEAKWRAQGRVPSLEEYLENRR-VTSGVPPMLALIELGLEFALGEEPPEWLESPPMLRRLAND 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHH-HHT-HHHHHHHHHHHCCTSS-HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHH
T ss_conf 799999999999999789998872494989999988843-1040649999999816652111357778504799999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999988751
Q T0584 219 AFQAVDDLLGI 229 (352)
Q Consensus 219 afQi~DDilD~ 229 (352)
..-+.||+..+
T Consensus 217 ~~~l~NDi~S~ 227 (270)
T PF03936_consen 217 IVRLVNDIYSY 227 (270)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHCCCCC
T ss_conf 75576332322
No 9
>PF04703 FaeA: FaeA-like protein; InterPro: IPR006793 This family represents a number of fimbrial protein transcription regulators found in Gram-negative bacteria. These proteins are thought to facilitate binding of the leucine-rich regulatory protein to regulatory elements, possibly by inhibiting deoxyadenosine methylation of these elements by deoxyadenosine methylase , .; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription, 0009289 fimbrium; PDB: 2htj_A 2jt1_A.
Probab=26.95 E-value=6.1 Score=15.20 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECC
Q ss_conf 999999999739997899999999999999997527877886555578721000
Q T0584 59 PALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKV 112 (352)
Q Consensus 59 p~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~ 112 (352)
|.=+--.++++|-..-++.. |.-.|.-+..+..++.|||.|+.|..
T Consensus 15 p~~t~eiA~~~gls~~qaR~--------~L~~L~~eG~Vk~~~~rrG~~~~W~l 60 (62)
T PF04703_consen 15 PCSTREIAEALGLSIYQARY--------YLQKLEKEGKVKRSPVRRGKSTYWRL 60 (62)
T ss_dssp -B-HHHHHHHHTS-HHHHHH--------HHHHHHH---EEEE--------EEEE
T ss_pred CCCHHHHHHHHCCCHHHHHH--------HHHHHHHCCCEEEECCCCCCCCEEEE
T ss_conf 98899999996988999999--------99999887977852057886311233
No 10
>PF11351 DUF3154: Protein of unknown function (DUF3154)
Probab=11.03 E-value=29 Score=11.27 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 21789999999997
Q T0584 55 KAVRPALAVLSAEV 68 (352)
Q Consensus 55 Kr~Rp~L~ll~~~~ 68 (352)
||+||++.+.+.-.
T Consensus 59 ~rwRP~l~~~~~~l 72 (123)
T PF11351_consen 59 RRWRPALAYGTLGL 72 (123)
T ss_pred HCCCCHHHHHHHHH
T ss_conf 10141999999999
Done!