Query T0584 3NF2, Streptomyces coelicolor, 352 residues Match_columns 352 No_of_seqs 184 out of 2359 Neff 7.1 Searched_HMMs 15564 Date Sun Jun 13 15:29:23 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0584.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0584.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1fpsa_ a.128.1.1 (A:) Farnesy 100.0 0 0 472.2 32.4 293 40-343 38-347 (348) 2 d2q80a1 a.128.1.1 (A:6-296) Ge 100.0 0 0 470.8 27.4 275 42-332 7-282 (291) 3 d1rqja_ a.128.1.1 (A:) Farnesy 100.0 0 0 455.3 28.8 288 3-343 1-298 (299) 4 d1rqja_ a.128.1.1 (A:) Farnesy 100.0 0 0 439.5 28.1 288 3-343 1-298 (299) 5 d1v4ea_ a.128.1.1 (A:) Octopre 100.0 0 0 429.5 24.9 256 44-323 22-278 (280) 6 d1rtra_ a.128.1.1 (A:) Farnesy 100.0 0 0 419.4 24.1 255 42-342 29-290 (290) 7 d1ezfa_ a.128.1.2 (A:) Squalen 96.9 0.012 7.4E-07 31.8 18.9 140 148-324 106-245 (333) 8 d1ps1a_ a.128.1.4 (A:) Pentale 96.1 0.034 2.2E-06 29.1 14.5 87 144-230 133-223 (311) 9 d1n1ba2 a.128.1.3 (A:271-598) 66.0 3.4 0.00022 17.3 15.0 88 144-231 141-233 (328) 10 d1kiya_ a.128.1.5 (A:) Trichod 49.8 6.6 0.00042 15.7 18.3 190 45-267 51-259 (354) 11 d2htja1 a.4.5.73 (A:1-73) P fi 41.0 4.1 0.00026 16.9 0.7 25 94-118 41-65 (73) 12 d5easa2 a.128.1.3 (A:221-548) 30.5 14 0.00087 13.9 15.6 171 55-230 43-230 (328) 13 d1vj7a1 a.211.1.1 (A:5-196) St 26.0 16 0.001 13.4 3.1 28 89-119 69-96 (192) 14 d1uwha_ d.144.1.7 (A:) B-Raf k 23.3 18 0.0012 13.1 1.5 21 76-96 110-130 (276) 15 d2o4ta1 a.69.4.1 (A:16-105) Un 23.2 14 0.00088 13.8 0.9 21 220-240 35-55 (90) 16 d1xjda_ d.144.1.7 (A:) Protein 22.6 19 0.0012 13.0 1.6 21 76-96 109-129 (320) 17 d1di1a_ a.128.1.4 (A:) Aristol 20.7 21 0.0013 12.8 18.3 61 170-230 151-211 (300) No 1 >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Probab=100.00 E-value=0 Score=472.16 Aligned_cols=293 Identities=20% Similarity=0.155 Sum_probs=258.5 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECC Q ss_conf 7777865466515872178999999999739997-------899999999999999997527877886555578721000 Q T0584 40 GWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAP-------EVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKV 112 (352) Q Consensus 40 ~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~-------~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~ 112 (352) .++.+...|.+ +||||+||+|++++++++|++. +.++++|+++||+|+||||||||||+|++|||+||+|++ T Consensus 38 ~~l~~~~~y~~-~GGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~~~~RRG~pt~~~~ 116 (348) T d1fpsa_ 38 ARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKK 116 (348) T ss_dssp HHHHHHHHHHS-SCSCCHHHHHHHHHHHHHCCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEETTEECTTTS T ss_pred HHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH T ss_conf 99999997046-88542759999999998489965446779999999999999999999817345687565456305540 Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHH Q ss_conf 4642789989999999999-9971--7990079999999999998778877887642689-----999899999998652 Q T0584 113 HGPAQAILVGDALFALANE-VLLE--LGTVEAGRATRRLTKASRSLIDGQAQDISYEHRD-----RVSVEECLEMEGNKT 184 (352) Q Consensus 113 ~G~~~Ail~Gd~l~~~a~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-----~~s~~~y~~~~~~KT 184 (352) ||++.|+++||+|++.++. ++.. .+.+...++++.+++++..++.||.+|+.+.... ..++++|++|+.+|| T Consensus 117 ~g~~~ail~gd~ll~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~t~~~Y~~~i~~KT 196 (348) T d1fpsa_ 117 EGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKT 196 (348) T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCSSSCCHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 33308898787899999999987622114779999876556555899999998862013443433367999999999874 Q ss_pred HHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCH Q ss_conf 689--999999999863999989999999988999999999988751378456167623233405677899999863896 Q T0584 185 GAL--LACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGA 262 (352) Q Consensus 185 a~L--f~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~ 262 (352) |+| |..++..|+++++.+++..+.+..||.++|+||||+||++|++++++.+|| .|+||++||+|||++++++..++ T Consensus 197 a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~gd~~~~GK-~g~Dl~egK~Tlpii~al~~~~~ 275 (348) T d1fpsa_ 197 AFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGK-VGTDIQDNKCSWLVVQCLQRVTP 275 (348) T ss_dssp HHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSS-CSCCCSSCCCCHHHHHHHHTCCH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCHHCCCC-CCCCCCCCCCHHHHHHHHHHCCH T ss_conf 13567888887777653012200110135435661299998777644034101586-32255577507999999995999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC Q ss_conf 78999999753100034456898999999999986490899999999999999999861799947899999999998611 Q T0584 263 ASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVR 342 (352) Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R 342 (352) ++++.+..+.. ..++++++++++++.++|++++++..++.+.++|.+.++.+| ++..++.|..+++++++| T Consensus 276 ~~r~~l~~~~~--------~~~~e~i~~v~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~~~-~~~~~~~L~~l~~~i~~R 346 (348) T d1fpsa_ 276 EQRQLLEDNYG--------RKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHS-NRLPKEIFLGLAQKIYKR 346 (348) T ss_dssp HHHHHHHHHSS--------SSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTC-SSSCTHHHHHHHHHHSCC T ss_pred HHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHC T ss_conf 99999999867--------999899999999999888699999999999999999987179-828999999999999748 Q ss_pred C Q ss_conf 2 Q T0584 343 K 343 (352) Q Consensus 343 ~ 343 (352) . T Consensus 347 ~ 347 (348) T d1fpsa_ 347 Q 347 (348) T ss_dssp C T ss_pred C T ss_conf 7 No 2 >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=0 Score=470.79 Aligned_cols=275 Identities=23% Similarity=0.209 Sum_probs=248.1 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHH Q ss_conf 77865466515872178999999999739997899999999999999997527877886555578721000464278998 Q T0584 42 IDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILV 121 (352) Q Consensus 42 ~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~ 121 (352) +-++.+|.+.+||||+||.|++++++++|++.+.+.++|+++|++|+||||||||||+|++|||+||+|.+||++.|||+ T Consensus 7 l~e~~~y~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~a~aiEllH~asLihDDi~D~~~~RRg~pt~~~~~G~~~Ail~ 86 (291) T d2q80a1 7 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINS 86 (291) T ss_dssp HTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 99999999858996299999999998819987999999999999999999861432475444578753112321345657 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999997179900799999999999987788778876426899-998999999986526899999999998639 Q T0584 122 GDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDR-VSVEECLEMEGNKTGALLACASSIGAVLGG 200 (352) Q Consensus 122 Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~-~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag 200 (352) ||+|++.+++.+++++++. +...+++++..+++||.+|+.+..+.. .+.++|++|+.+|||+||++||.+|++++| T Consensus 87 gd~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~KT~~Lf~~~~~~ga~~~~ 163 (291) T d2q80a1 87 ANYVYFLGLEKVLTLDHPD---AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD 163 (291) T ss_dssp HHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 7778888988642112358---9999999877767414541000013454879999999985032035765556653011 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 99989999999988999999999988751378456167623233405677899999863896789999997531000344 Q T0584 201 ADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDF 280 (352) Q Consensus 201 ~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~ 280 (352) .++ .+.+||+++|+||||+||++|++++++.+|||+|+||++||+|||++++++..+.. +++..++... T Consensus 164 ~~~----~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~~-~~l~~il~~~------ 232 (291) T d2q80a1 164 YKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPES-TQVQNILRQR------ 232 (291) T ss_dssp CCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTC-CHHHHHHHHT------ T ss_pred CCH----HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHCCCCCCHHHHHHHHHCCCH-HHHHHHHHCC------ T ss_conf 000----24788877899999887766410530102565322020488769999999845237-9999998645------ Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 5689899999999998649089999999999999999986179994789999 Q T0584 281 ANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRF 332 (352) Q Consensus 281 ~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L 332 (352) ..+.+.++++++++.++|++++++.+++.|.++|++.|+.+|.++. +..| T Consensus 233 -~~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~~-~~~L 282 (291) T d2q80a1 233 -TENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE-LVAL 282 (291) T ss_dssp -CCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHH-HHHH T ss_pred -CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHH T ss_conf -6999999999999998597999999999999999999874999989-9999 No 3 >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} SCOP: d1rqia_ d1rqjb_ d1rtra_ d1vg2a_ d1v4ha_ d1vg6a_ d1vg3a_ d1vg7a_ d1v4ea_ d1v4ia_ d1vg4a_ d1v4ja_ d1v4ka_ Probab=100.00 E-value=0 Score=455.30 Aligned_cols=288 Identities=31% Similarity=0.399 Sum_probs=248.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 75789999999999999999986320668899888777777865466515872178999999999739997899999999 Q T0584 3 LDVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352) Q Consensus 3 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aaa 82 (352) |+++..|++.+..|++.|.+.+......- .++.++.+|.+.+||||+||.|++++++++|++++.++++|++ T Consensus 1 m~~~~~l~~~~~~v~~~l~~~~~~~~~~~--------~~l~~~~~~~~~~gGKrlRp~l~~~~~~~~~~~~~~~~~~a~a 72 (299) T d1rqja_ 1 MDFPQQLEACVKQANQALSRFIAPLPFQN--------TPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAA 72 (299) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTT--------SHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 98689999999999999999875317887--------3689999998618871168999999999738995478899999 Q ss_pred HHHHHHHHHHCCCC--CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHH--H Q ss_conf 99999999752787--78865555787210004642789989999999999997179900-----799999999999--9 Q T0584 83 VELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE-----AGRATRRLTKAS--R 153 (352) Q Consensus 83 vEliH~asLiHDDi--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~-----~~~~~~~~~~~~--~ 153 (352) +|++|+|||||||| ||+|++|||+||+|.+||+++|||+||+|++.+|+++++++.+. ..+++..++.++ . T Consensus 73 iEliH~asLihDDI~~~D~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (299) T d1rqja_ 73 VECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIA 152 (299) T ss_dssp HHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTT T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999984786545555355543210110014422453357998899998621553310799999999999987789 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 877887788764268999989999999865268999999999986399-9989999999988999999999988751378 Q T0584 154 SLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGA-DERTADTLEKYGYHLGLAFQAVDDLLGIWGD 232 (352) Q Consensus 154 ~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~afQi~DDilD~~~~ 232 (352) .+++||.+|+.+..+ .++.++|++|+++|||+||++||.+|++++|+ +++..+.+.+||+++|+||||+||++|++++ T Consensus 153 ~l~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~lf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~d 231 (299) T d1rqja_ 153 GMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299) T ss_dssp THHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999888765544312-4789999999885301588999999999863125799999999999732157778776642056 Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 45616762323340567789999986389678999999753100034456898999999999986490899999999999 Q T0584 233 PDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH 312 (352) Q Consensus 233 ~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~ 312 (352) ++++|||+|+|+++||+|||++++++ .+....+.+. T Consensus 232 ~~~~GK~~g~Dl~~gk~T~~~i~~le--------------------------------------------~a~~~~~~~~ 267 (299) T d1rqja_ 232 TATLGKRQGADQQLGKSTYPALLGLE--------------------------------------------QARKKARDLI 267 (299) T ss_dssp HHHHSSCTTHHHHHTCCCHHHHHCHH--------------------------------------------HHHHHHHHHH T ss_pred HHHHCCCCCCHHHHCCCCHHHHHHHH--------------------------------------------HHHHHHHHHH T ss_conf 23405751002652336379999999--------------------------------------------9899999999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 9999998617999478999999999986112 Q T0584 313 TIAIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 313 ~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~ 343 (352) +++++.++.++..+..++.|..+++|+++|. T Consensus 268 ~~a~~~l~~l~~~~~~~~~l~~l~~~~~~R~ 298 (299) T d1rqja_ 268 DDARQSLKQLAEQSLDTSALEALADYIIQRN 298 (299) T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHCC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC T ss_conf 9999998640564214899999999984058 No 4 >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=439.55 Aligned_cols=288 Identities=30% Similarity=0.386 Sum_probs=243.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 75789999999999999999986320668899888777777865466515872178999999999739997899999999 Q T0584 3 LDVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352) Q Consensus 3 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aaa 82 (352) |+++..++..++.|+..|.+.+...++.- .++.+..+|.+.+||||+||.|++++++++|++.+.++++|+| T Consensus 1 m~~~~~~~~~~~~i~~~l~~~~~~~~~~~--------~~l~e~~~y~~~~gGKrlRp~l~~~~~~~~g~~~~~~~~~A~a 72 (299) T d1rqja_ 1 MDFPQQLEACVKQANQALSRFIAPLPFQN--------TPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAA 72 (299) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTT--------SHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 98499999999999999999875357898--------2599999987307835099999999999809960668998999 Q ss_pred HHHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHH---HHHHH--HH Q ss_conf 999999997527877--8865555787210004642789989999999999997179900--799999---99999--99 Q T0584 83 VELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE--AGRATR---RLTKA--SR 153 (352) Q Consensus 83 vEliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~--~~~~~~---~~~~~--~~ 153 (352) +||+|+||||||||+ |++++|||+||+|.+||++.||++||+|++.+++.+++++.+. ....+. .++.+ +. T Consensus 73 iEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (299) T d1rqja_ 73 VECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIA 152 (299) T ss_dssp HHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTT T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999997254134542112455431034075433552104788999999867995333789999999999986489 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 8778877887642689999899999998652689999999999863-999989999999988999999999988751378 Q T0584 154 SLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLG-GADERTADTLEKYGYHLGLAFQAVDDLLGIWGD 232 (352) Q Consensus 154 ~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~la-g~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~ 232 (352) .+++||.+|+.+..+ ..+.+.|+.|+.+|||+||.++|.+|+.++ +.+.+..+.+.+||.++|+||||+||++|++++ T Consensus 153 ~l~~GQ~ldl~~~~~-~~~~~~~~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~ 231 (299) T d1rqja_ 153 GMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299) T ss_dssp THHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999982267-6659999999999876677888875454421103688999999999999999999988764052 Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 45616762323340567789999986389678999999753100034456898999999999986490899999999999 Q T0584 233 PDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH 312 (352) Q Consensus 233 ~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~ 312 (352) ++.+|||.|+|+++||+|||++++++. ++...+.+. T Consensus 232 ~~~~GK~~g~Dl~egK~Tlp~i~~le~--------------------------------------------a~~~~~~~~ 267 (299) T d1rqja_ 232 TATLGKRQGADQQLGKSTYPALLGLEQ--------------------------------------------ARKKARDLI 267 (299) T ss_dssp HHHHSSCTTHHHHHTCCCHHHHHCHHH--------------------------------------------HHHHHHHHH T ss_pred HHHCCCCHHHHHHCCCHHHHHHHHHHH--------------------------------------------HHHHHHHHH T ss_conf 553098641387779720999999998--------------------------------------------799999999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 9999998617999478999999999986112 Q T0584 313 TIAIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 313 ~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~ 343 (352) +++++.|+.++..+..++.|+.+++|+++|. T Consensus 268 ~~~~~~l~~l~~~~~~~~~L~~l~~~i~~R~ 298 (299) T d1rqja_ 268 DDARQSLKQLAEQSLDTSALEALADYIIQRN 298 (299) T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 9999999863314502899999999998678 No 5 >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=429.48 Aligned_cols=256 Identities=25% Similarity=0.315 Sum_probs=228.3 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHH Q ss_conf 86546651587217899999999973999-78999999999999999975278778865555787210004642789989 Q T0584 44 AQGNPADGDGGKAVRPALAVLSAEVTGAA-PEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVG 122 (352) Q Consensus 44 ~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~-~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~G 122 (352) +...|....||||+||.||+++++++|++ ++.++++|+++|++|+||||||||||+|++|||+||+|.+||++.||++| T Consensus 22 ~~~~~~~~~~GKr~Rp~l~~~~~~~~g~~~~~~~~~~AaaiEliH~asLIhDDi~D~s~~RRG~pt~h~~~g~~~ail~g 101 (280) T d1v4ea_ 22 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAG 101 (280) T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHH T ss_conf 99986864775439999999999980999539999999999999999998642765212444454012112101122148 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999717990079999999999998778877887642689999899999998652689999999999863999 Q T0584 123 DALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGAD 202 (352) Q Consensus 123 d~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~ 202 (352) |++++.++..++..+++ ++...+++++..++.||.+|+.+... .++.++|++|+.+|||+||++||.+|++++|.. T Consensus 102 d~l~~~a~~~l~~~~~~---~~~~~l~~~~~~~~~Gq~~d~~~~~~-~~t~~~y~~~i~~KT~~lf~~~~~~ga~l~g~~ 177 (280) T d1v4ea_ 102 DLVLVSAFHTVEEIGNN---KLRRAFLNVIGKMSEAELIEQLSRYK-PITKEEYLRIVEGKSGALFGLALQLPALLEGEL 177 (280) T ss_dssp HHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHCCCCCCCC---CCCCCCHHHCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC T ss_conf 88777653011221000---11100001102204678777773169-998999999887152438999999999971243 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 98999999998899999999998875137845616762323340567789999986389678999999753100034456 Q T0584 203 ERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFAN 282 (352) Q Consensus 203 ~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (352) .+ .+.+||+++|+||||+||++|+++++ .+|||.|+||++||+|||++++++..+...+.+. T Consensus 178 ~~---~l~~~g~~lG~afQi~DD~ld~~~~~-~~GK~~g~Dl~~gK~T~p~i~al~~~~~~~~~~~-------------- 239 (280) T d1v4ea_ 178 GE---DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFE-------------- 239 (280) T ss_dssp CH---HHHHHHHHHHHHHHHHHHHHHHTTCC-SCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHH-------------- T ss_pred HH---HHHHHHHHHHHHHHHHHHHCCCCCHH-HHCCCCHHHHHCCCCCHHHHHHHHHCHHHHHHHH-------------- T ss_conf 89---99999999999999877621554606-5414204567479710999999986989999988-------------- Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 89899999999998649089999999999999999986179 Q T0584 283 FSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVD 323 (352) Q Consensus 283 ~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~ 323 (352) .+++..+.+++.++|+++++++.++.+.++|+..+..+| T Consensus 240 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~l~ 278 (280) T d1v4ea_ 240 --NRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLR 278 (280) T ss_dssp --TTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGC T ss_pred --HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf --899999999999857899999999999999988864699 No 6 >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Probab=100.00 E-value=0 Score=419.42 Aligned_cols=255 Identities=32% Similarity=0.468 Sum_probs=222.2 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHH Q ss_conf 77865466515872178999999999739997899999999999999997527877--8865555787210004642789 Q T0584 42 IDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAI 119 (352) Q Consensus 42 ~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ai 119 (352) +.+..+|.+.+||||+||.|++++++++|++++.++++|+++||+|+||||||||+ |++..|||+||+|.+||++.|| T Consensus 29 l~~~~~y~l~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ai 108 (290) T d1rtra_ 29 LEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAI 108 (290) T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 99999837239944686999999999849981132887999999999999852313210011210130368885101788 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 989999999999997179900799---99999999--9987788778876426899998999999986526899999999 Q T0584 120 LVGDALFALANEVLLELGTVEAGR---ATRRLTKA--SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSI 194 (352) Q Consensus 120 l~Gd~l~~~a~~~l~~~~~~~~~~---~~~~~~~~--~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ 194 (352) ++||+++++|+.+++..+...... +...++.+ ...++.||.+|+.+... ..+.+.|+.|+.+|||+||.++|.+ T Consensus 109 l~Gd~l~~~a~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~GQ~~Dl~~~~~-~~~~~~~~~i~~~KT~~l~~~~~~~ 187 (290) T d1rtra_ 109 LAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMS 187 (290) T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 707610679999998478751256767999999997399999769999985256-7999999999998777888751000 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99863999989999999988999999999988751378456167623233405677899999863896789999997531 Q T0584 195 GAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTAD 274 (352) Q Consensus 195 ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~ 274 (352) |+++++++++..+.+.+||.++|+||||+||++|++|+++.+|||.|+||++||+|||++++++. T Consensus 188 ~a~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~--------------- 252 (290) T d1rtra_ 188 AADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDG--------------- 252 (290) T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHH--------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCCCCCHHHHHHHHH--------------- T ss_conf 00024456777799999999878788999999887323576525723476659853999999999--------------- Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC Q ss_conf 00034456898999999999986490899999999999999999861799947899999999998611 Q T0584 275 AKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVR 342 (352) Q Consensus 275 ~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R 342 (352) +...+..+.+++.+.+..++. ...+..|.++++++++| T Consensus 253 -----------------------------a~~~~~~~~~~~~~~l~~~~~-~~~~~~l~el~d~i~~R 290 (290) T d1rtra_ 253 -----------------------------AEDKLTYHRDAAVDELTQIDE-QFNTKHLLEIVDLFYSR 290 (290) T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTSCT-TSCCHHHHHHHHHHHCC T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCC T ss_conf -----------------------------999999999999999876847-44299999999999739 No 7 >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Probab=96.86 E-value=0.012 Score=31.78 Aligned_cols=140 Identities=11% Similarity=-0.037 Sum_probs=87.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999987788778876426899998999999986526899999999998639999899999999889999999999887 Q T0584 148 LTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLL 227 (352) Q Consensus 148 ~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDil 227 (352) +......+..|+..+... .-.|.+++..-+.+-.|+.-.+.+.+-..-.. .....+....++.++|+|+|+.|=+. T Consensus 106 i~~~~~~m~~gm~d~~~~---~~~t~~dL~~Ycy~VAG~VG~~l~~l~~~~~~-~~~~~~~~~~~A~~lG~AlQltNIlR 181 (333) T d1ezfa_ 106 IADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF-EDPLVGEDTERANSMGLFLQKTNIIR 181 (333) T ss_dssp HHHHHHHHHHHHHHHHTS---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS-SCHHHHHCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 577999982647887267---68999999999999999999999999576777-63007999999999999998988997 Q ss_pred HHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 51378456167623233405677899999863896789999997531000344568989999999999864908999999 Q T0584 228 GIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADE 307 (352) Q Consensus 228 D~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~ 307 (352) |+. +|+..|+.-+|.=..-+.+-..+. + . . ....+.+ .. +++.-... T Consensus 182 Di~-----------eD~~~gR~YlP~e~l~~~g~~~~d-l---~-~--------~~~~~~~---~~------~~~~l~~~ 228 (333) T d1ezfa_ 182 DYL-----------EDQQGGREFWPQEVWSRYVKKLGD-F---A-K--------PENIDLA---VQ------CLNELITN 228 (333) T ss_dssp THH-----------HHHHHTCCCSCHHHHTTTCSSGGG-G---G-S--------GGGHHHH---HH------HHHHHHHH T ss_pred HHH-----------HHHHCCCEECCHHHHHHCCCCHHH-H---H-H--------CCCHHHH---HH------HHHHHHHH T ss_conf 357-----------899689677777999883999999-9---7-4--------2031789---99------99999999 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 99999999999861799 Q T0584 308 ARRQHTIAIEALDAVDM 324 (352) Q Consensus 308 ~~~~~~~A~~~L~~l~~ 324 (352) +..|...|++.+..+|. T Consensus 229 A~~~~~~a~~y~~~lp~ 245 (333) T d1ezfa_ 229 ALHHIPDVITYLSRLRN 245 (333) T ss_dssp HHTTHHHHHHHHHTCCC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999987892 No 8 >d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Probab=96.14 E-value=0.034 Score=29.05 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=53.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHH Q ss_conf 99999999998778877887642689--99989999999865268999999999986399998999--999998899999 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHRD--RVSVEECLEMEGNKTGALLACASSIGAVLGGADERTAD--TLEKYGYHLGLA 219 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~~--~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~--~l~~~G~~lG~a 219 (352) ....+.+.+.....+...+..+.... ..|.++|+.+-..-+|..+..++.--+.=-..+++..+ .+.++-...+.. T Consensus 133 ~~~r~~~~~~~~~~~~~~e~~~r~~~~~~ps~~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~v~~~~~~~~l~~~~~~~ 212 (311) T d1ps1a_ 133 WCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDV 212 (311) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHH T ss_conf 99999999999999999999985258899999999999884010888999999984898899999601139999999999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999887513 Q T0584 220 FQAVDDLLGIW 230 (352) Q Consensus 220 fQi~DDilD~~ 230 (352) .=+.||+.-+- T Consensus 213 ~~l~NDi~S~~ 223 (311) T d1ps1a_ 213 NLLLNDIASLE 223 (311) T ss_dssp HHHHHHHHTHH T ss_pred HHHHHHHHHHH T ss_conf 88652677887 No 9 >d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Probab=66.03 E-value=3.4 Score=17.34 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=50.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHH---HHHHHHH Q ss_conf 99999999998778877887642689-9998999999986526899999-99999863999989999999---9889999 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHRD-RVSVEECLEMEGNKTGALLACA-SSIGAVLGGADERTADTLEK---YGYHLGL 218 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~s~~~y~~~~~~KTa~Lf~~a-~~~ga~lag~~~~~~~~l~~---~G~~lG~ 218 (352) .+..+-++....+.+=..+..|.... -+|.++|+++...-+|...-.+ ..+|..-...+.+..+.+.. +-...++ T Consensus 141 ~~~~lk~~w~~l~~ayl~EakW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 220 (328) T d1n1ba2 141 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGI 220 (328) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH T ss_conf 89999999999999999999998459889889998622100018899999999477766559999877505799999999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999998875137 Q T0584 219 AFQAVDDLLGIWG 231 (352) Q Consensus 219 afQi~DDilD~~~ 231 (352) ..-+.||+..+.. T Consensus 221 i~RL~nDi~~~~~ 233 (328) T d1n1ba2 221 ILRLPDDLGTSYF 233 (328) T ss_dssp HHHHHHHHC---- T ss_pred HHHHHHHHHHHHH T ss_conf 9999864443798 No 10 >d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Probab=49.78 E-value=6.6 Score=15.69 Aligned_cols=190 Identities=9% Similarity=0.007 Sum_probs=92.4 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------CCCCCEECC Q ss_conf 65466515872178999999999---739997899999999999999997527877886555---------578721000 Q T0584 45 QGNPADGDGGKAVRPALAVLSAE---VTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQR---------RHRDTVWKV 112 (352) Q Consensus 45 ~~~~~~~~gGKr~Rp~L~ll~~~---~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~R---------RG~pt~~~~ 112 (352) ..+..+..+-||++|.+...+.- +...-+ ...-..|-+.-+..++.||+.|....- .|+|..|- T Consensus 51 ~~~~~l~~~p~rl~~~~~~~v~~~~~~yp~~~---~e~~~~Ial~t~~~~~lDD~~~~~~~~l~~f~~~l~~G~~q~~p- 126 (354) T d1kiya_ 51 RQQQLLKVDPKRLQASLQTIVGMVVYSWAKVS---KECMADLSIHYTYTLVLEDSKDDPYPTMVNYFDDLQAGREQAHP- 126 (354) T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHSTTSC---HHHHHHHHHHHHHHHHHTTCCSCSHHHHTTHHHHHHHTCCCSSH- T ss_pred HHHHHCCCCHHHHHHHHHHHHEEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCH- T ss_conf 06765267888998998731314664267799---99999999999999995665554367899999999838888667- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 46427899899999999999971799007999999999999877887788764268999989999999865268999999 Q T0584 113 HGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACAS 192 (352) Q Consensus 113 ~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~ 192 (352) ++.|- +.-+..+.+.-.+ -....+.....+..+|..++....+. ....+.|-...+.|||.-...++ T Consensus 127 ------~l~~f---~~~L~~~~~~~g~---~~~~~i~~s~l~fv~a~~~E~~~~~~-~p~s~~y~~yrR~~sG~~e~ya~ 193 (354) T d1kiya_ 127 ------WWALV---NEHFPNVLRHFGP---FCSLNLIRSTLDFFEGCWIEQYNFGG-FPGSHDYPQFLRRMNGLGHCVGA 193 (354) T ss_dssp ------HHHHH---HHHHHHHHTTSCH---HHHHHHHHHHHHHHHHHHHHTTCCCC-CTTCTTHHHHHHHHHHCHHHHHH T ss_pred ------HHHHH---HHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCHHHHHH T ss_conf ------99999---9999999987264---88999999999999999998760488-88805667778762570989999 Q ss_pred HHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHH Q ss_conf 9999863999-------989999999988999999999988751378456167623233405677899999863896789 Q T0584 193 SIGAVLGGAD-------ERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASE 265 (352) Q Consensus 193 ~~ga~lag~~-------~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~ 265 (352) . +..... .....++...... .=..|||+-+. ++.. ...-..+++.+++-..+-...+ T Consensus 194 f---~fp~~~fpe~~~~~~~~~ai~~~~~~----i~~~NDi~Sfy---KE~~------~~ge~~N~V~vla~~~g~s~~e 257 (354) T d1kiya_ 194 S---LWPKEQFNERSLFLEITSAIAQMENW----MVWVNDLMSFY---KEFD------DERDQISLVKNYVVSDEISLHE 257 (354) T ss_dssp T---TCCTTTCCTTTSHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHT------CTTCCCCHHHHHHHHHTCCHHH T ss_pred H---HCCHHCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCC---HHHH------CCCCCCCHHHHHHHHHCCCHHH T ss_conf 9---75121187088899999999999999----87753464010---5652------3787523799999994889999 Q ss_pred HH Q ss_conf 99 Q T0584 266 RL 267 (352) Q Consensus 266 ~~ 267 (352) .+ T Consensus 258 Al 259 (354) T d1kiya_ 258 AL 259 (354) T ss_dssp HH T ss_pred HH T ss_conf 99 No 11 >d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]} Probab=40.98 E-value=4.1 Score=16.88 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.6 Q ss_pred CCCCCCCCCCCCCCCEECCCCCHHH Q ss_conf 7877886555578721000464278 Q T0584 94 DDLMDGDEQRRHRDTVWKVHGPAQA 118 (352) Q Consensus 94 DDi~D~s~~RRG~pt~~~~~G~~~A 118 (352) ..-+-.|++|||..|.|-.-|+..| T Consensus 41 egki~RsPlRrGa~TlW~~~~ek~~ 65 (73) T d2htja1 41 AGMVQRSPLRRGMATYWFLKGEKQA 65 (73) T ss_dssp HTSEEEECCSSSSSCEEEESSCSSS T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 1570148454005888888645642 No 12 >d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Probab=30.48 E-value=14 Score=13.87 Aligned_cols=171 Identities=13% Similarity=-0.003 Sum_probs=81.0 Q ss_pred CCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCCEECCCCCHHHHHHH Q ss_conf 217899999999973999789-99999999999999975278778865-----------555787210004642789989 Q T0584 55 KAVRPALAVLSAEVTGAAPEV-GVPGAVAVELVHNFSLLHDDLMDGDE-----------QRRHRDTVWKVHGPAQAILVG 122 (352) Q Consensus 55 Kr~Rp~L~ll~~~~~g~~~~~-~~~~AaavEliH~asLiHDDi~D~s~-----------~RRG~pt~~~~~G~~~Ail~G 122 (352) -|-|++-+...+-+.=-+|+- .-+.+.|= .+...+ |.||+-|.-. ..|--++..-..+.-+-+... T Consensus 43 aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK-~~~l~t-i~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~ 120 (328) T d5easa2 43 ARDRVVECYFWALGVYFEPQYSQARVMLVK-TISMIS-IVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYK 120 (328) T ss_dssp SCCCHHHHHHHHHHHCCSGGGHHHHHHHHH-HHHHHH-HHHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHH-HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHH T ss_conf 478999999999986648334889999999-999998-644310367999999999999865794045548741799999 Q ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999997-17990079999999999998778877887642689-9998999999986526899999999998639 Q T0584 123 DALFALANEVLL-ELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRD-RVSVEECLEMEGNKTGALLACASSIGAVLGG 200 (352) Q Consensus 123 d~l~~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag 200 (352) .++. .+..+. ++.......++..+-++...++.+=..+-.|..+. -+|.++|+++...-+|.. -+.+..=...+. T Consensus 121 -~l~~-~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA~W~~~g~vPt~eEYl~~~~~s~~~~-~l~~~~~~~~g~ 197 (328) T d5easa2 121 -AILD-LYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYY-YLATTSYLGMKS 197 (328) T ss_dssp -HHHH-HHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHH-HHHHHHHHTCTT T ss_pred -HHHH-HHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEEHHH-HHHHHHHHHCCC T ss_conf -9999-9999999999956901399899999999999999999986799998576621413454699-999999983798 Q ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHC Q ss_conf 9998999999---99889999999999887513 Q T0584 201 ADERTADTLE---KYGYHLGLAFQAVDDLLGIW 230 (352) Q Consensus 201 ~~~~~~~~l~---~~G~~lG~afQi~DDilD~~ 230 (352) ..++...... .+....+....+.||+..+. T Consensus 198 ~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~ 230 (328) T d5easa2 198 ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 230 (328) T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 768999841435599999999999972467778 No 13 >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Probab=26.01 E-value=16 Score=13.40 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=11.5 Q ss_pred HHHHCCCCCCCCCCCCCCCCEECCCCCHHHH Q ss_conf 9975278778865555787210004642789 Q T0584 89 FSLLHDDLMDGDEQRRHRDTVWKVHGPAQAI 119 (352) Q Consensus 89 asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ai 119 (352) |+|.||.+.|.... ..-+-..||..++- T Consensus 69 AalLhd~~edt~~t---~e~I~~~FG~~Va~ 96 (192) T d1vj7a1 69 CGFLHDVVEDTDIT---LDNIEFDFGKDVRD 96 (192) T ss_dssp HHHHTTHHHHSSCC---HHHHHHHHCHHHHH T ss_pred HHHEECHHHHCHHH---HHHHHHHCCHHHHH T ss_conf 21021416302058---88888751345799 No 14 >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Probab=23.32 E-value=18 Score=13.10 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999999752787 Q T0584 76 GVPGAVAVELVHNFSLLHDDL 96 (352) Q Consensus 76 ~~~~AaavEliH~asLiHDDi 96 (352) +..+|.+++.+|.-..||-|| T Consensus 110 ~~qi~~gl~yLH~~~ivHrDl 130 (276) T d1uwha_ 110 ARQTAQGMDYLHAKSIIHRDL 130 (276) T ss_dssp HHHHHHHHHHHHHTTCCCSCC T ss_pred HHHHHHHHHHHHCCCEECCCC T ss_conf 999999988875099951614 No 15 >d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]} Probab=23.24 E-value=14 Score=13.84 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=17.2 Q ss_pred HHHHHHHHHHCCCHHHHCCCH Q ss_conf 999998875137845616762 Q T0584 220 FQAVDDLLGIWGDPDATGKQT 240 (352) Q Consensus 220 fQi~DDilD~~~~~~~~GK~~ 240 (352) .||..|++|.+-..+.-||++ T Consensus 35 ~~il~dil~lleea~~~G~~v 55 (90) T d2o4ta1 35 IGLLSEILGFFEEGAAAGKGV 55 (90) T ss_dssp HHHHHHHHHHHHHHHHTTCCH T ss_pred HHHHHHHHHHHHHHHHCCCCH T ss_conf 999999999999999849979 No 16 >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Probab=22.65 E-value=19 Score=13.01 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999999752787 Q T0584 76 GVPGAVAVELVHNFSLLHDDL 96 (352) Q Consensus 76 ~~~~AaavEliH~asLiHDDi 96 (352) ...++.|++.+|...+||-|| T Consensus 109 ~~qi~~al~ylH~~~iiHrDi 129 (320) T d1xjda_ 109 AAEIILGLQFLHSKGIVYRDL 129 (320) T ss_dssp HHHHHHHHHHHHHTTCBCCCC T ss_pred HHHHHHHHHHHHHCCEEECCC T ss_conf 999999999998689340347 No 17 >d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Probab=20.74 E-value=21 Score=12.78 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=39.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9998999999986526899999999998639999899999999889999999999887513 Q T0584 170 RVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352) Q Consensus 170 ~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~ 230 (352) ..+.++|+.+-...+|..+..++.--+.-..-+++....+...-...+...=+.||+..+- T Consensus 151 ~psl~eYl~~R~~~~g~~~~~~l~e~~~g~~lp~~~~~~~~~l~~~~~~~~~l~NDl~S~~ 211 (300) T d1di1a_ 151 IHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYD 211 (300) T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999885465889999999974888998999899999999999999970487798 Done!