Query T0585 APC62366.1, Bartonella henselae, 234 residues Match_columns 234 No_of_seqs 114 out of 1820 Neff 8.1 Searched_HMMs 22458 Date Sun Jun 13 15:24:12 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0585.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0585.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1jwq_A N-acetylmuramoyl-L-alan 100.0 0 0 323.7 19.8 176 6-227 3-179 (179) 2 1xov_A PLY protein, plypsa; al 100.0 1.2E-43 0 289.4 14.1 171 5-224 14-187 (326) 3 3czx_A Putative N-acetylmuramo 100.0 2.9E-43 0 287.0 13.9 173 6-227 5-180 (182) 4 2gfq_A UPF0204 protein PH0006; 82.7 1.6 7.2E-05 21.4 4.7 119 62-227 80-208 (298) 5 1yqe_A Hypothetical UPF0204 pr 79.6 2.7 0.00012 20.0 8.0 35 182-221 148-182 (282) 6 1y37_A Fluoroacetate dehalogen 64.2 6.2 0.00028 17.8 5.8 47 5-53 53-100 (304) 7 3k2k_A Putative carboxypeptida 62.4 6.6 0.00029 17.6 3.8 43 183-226 356-401 (403) 8 1wqa_A Phospho-sugar mutase; a 61.8 6.9 0.00031 17.5 6.2 13 3-15 173-185 (455) 9 2z0f_A Putative phosphoglucomu 47.5 8.8 0.00039 16.9 2.4 11 4-14 210-220 (524) 10 3cdx_A Succinylglutamatedesucc 46.3 12 0.00055 15.9 6.7 38 179-227 203-240 (354) 11 2g2c_A Putative molybdenum cof 46.2 10 0.00046 16.4 2.5 48 34-81 29-76 (167) 12 1p5d_X PMM, phosphomannomutase 44.5 13 0.00059 15.8 5.9 14 2-15 170-183 (463) 13 2vvt_A Glutamate racemase; iso 40.7 15 0.00067 15.4 5.7 51 6-57 27-96 (290) 14 2jfz_A Glutamate racemase; cel 36.7 17 0.00077 15.0 4.8 53 6-59 3-74 (255) 15 1kfi_A Phosphoglucomutase 1; p 33.4 14 0.00062 15.6 1.6 14 2-15 228-241 (572) 16 1ccw_A Protein (glutamate muta 32.0 21 0.00092 14.5 6.3 46 37-86 21-67 (137) 17 2qj8_A MLR6093 protein; NP_106 30.1 22 0.00099 14.3 4.9 26 61-86 116-145 (332) 18 2jfq_A Glutamate racemase; cel 29.9 22 0.001 14.3 6.0 54 2-57 22-94 (286) 19 1ad1_A DHPS, dihydropteroate s 29.3 13 0.00058 15.8 0.9 36 8-47 42-77 (266) 20 1y5e_A Molybdenum cofactor bio 26.9 25 0.0011 14.0 4.4 48 35-82 32-80 (169) 21 2fuv_A Phosphoglucomutase; str 26.6 26 0.0011 14.0 4.5 15 32-46 64-78 (549) 22 2gzm_A Glutamate racemase; enz 26.5 26 0.0011 14.0 6.5 54 2-57 3-75 (267) 23 2vef_A Dihydropteroate synthas 25.6 16 0.00073 15.2 0.8 16 67-82 98-113 (314) 24 2dqw_A Dihydropteroate synthas 25.2 19 0.00085 14.8 1.1 14 8-21 68-81 (294) 25 2is8_A Molybdopterin biosynthe 24.7 28 0.0012 13.7 4.1 45 36-80 23-68 (164) 26 3pmg_A Alpha-D-glucose-1,6-bis 24.4 24 0.0011 14.1 1.5 13 3-15 215-227 (561) 27 2vp8_A Dihydropteroate synthas 22.8 20 0.0009 14.6 0.8 20 34-53 65-84 (318) 28 1f0k_A MURG, UDP-N-acetylgluco 21.9 32 0.0014 13.4 2.9 69 1-84 3-106 (364) 29 3ist_A Glutamate racemase; str 21.8 32 0.0014 13.4 5.4 51 6-57 8-77 (269) No 1 >1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6 Probab=100.00 E-value=0 Score=323.71 Aligned_cols=176 Identities=34% Similarity=0.571 Sum_probs=160.1 Q ss_pred EEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 899827877889975088-8840688899999999999995699199987388874798999999984499789986035 Q T0585 6 RVVLDPGHGGIDGGARGV-TGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHAD 84 (234) Q Consensus 6 ~IvIDpGHGG~D~Ga~g~-~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSiH~n 84 (234) +|||||||||.||||+|. +|+.|+++||++|++|+++|++.+..+|++||++|.+++|.+|+.+||+.+||+|||||+| T Consensus 3 ~I~iDpGHGG~d~Ga~g~~~~~~E~~~~l~ia~~l~~~L~~~~~~~v~~tr~~d~~~~l~~r~~~an~~~adl~iSiH~n 82 (179) T 1jwq_A 3 VVVIDAGHGAKDSGAVGISRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHAN 82 (179) T ss_dssp EEEEEECCBTTBCCSBCTTSSCBHHHHHHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEC T ss_conf 99994999989998578999911199999999999998640269689994788877780188999872599899999767 Q ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 67788742589985278887078999997410233311333210367899999988741078899999999998875116 Q T0585 85 TIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHI 164 (234) Q Consensus 85 s~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~la~~i~~~l~~~~~ 164 (234) +++++.++|+++||++.. +..+|+.+.+++... . T Consensus 83 a~~~~~~~G~~v~~~~~~---------------------------------------------s~~~a~~i~~~l~~~-~ 116 (179) T 1jwq_A 83 SSGSSASNGTETYYQRSA---------------------------------------------SKAFANVMHKYFAPA-T 116 (179) T ss_dssp CCSSTTCCCEEEEECSGG---------------------------------------------GHHHHHHHHHHHHHH-H T ss_pred CCCCCCCCEEEEEEECHH---------------------------------------------HHHHHHHHHHHHHHH-C T ss_conf 889988764899986523---------------------------------------------199999999877652-2 Q ss_pred CCCCCCEECCCCEEEECCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 645685004860264069897776654038898999872398899999999999999999840 Q T0585 165 NLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYR 227 (234) Q Consensus 165 ~~~~~~~~~~~l~vlr~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~y~~~~ 227 (234) +..+++++.++|++||.+.||+||||+|||||+.|+++|.++++|+++|++|++||.+||+.| T Consensus 117 ~~~~~g~~~~~l~vLr~t~~PavLvE~gfi~N~~D~~~l~~~~~~~~iA~ai~~gI~~y~~~k 179 (179) T 1jwq_A 117 GLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK 179 (179) T ss_dssp CSCEEEEEECCCHHHHSCSSCEEEEEEEETTSHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCC T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 876687013787566279997289996057998999986399999999999999999997259 No 2 >1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6 Probab=100.00 E-value=1.2e-43 Score=289.38 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=149.4 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 5899827877889975088884068889999999999999569919998738--88747989999999844997899860 Q T0585 5 FRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRD--SDIFLRLSERVKKAQEFDADLFISIH 82 (234) Q Consensus 5 ~~IvIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~--~D~~~sl~~R~~~A~~~~adl~iSiH 82 (234) .+|+|||||||.||||+| ++.|+++|++||++|+++|++.|+.|++++.+ +|.+.+|.+|+++||+.+||+||||| T Consensus 14 ~~~~idaGHgg~d~GA~G--~~~E~~~~l~vA~~l~~~L~~~G~~V~~~~~~~~~d~~~~L~~Rv~~AN~~~aDlfISIH 91 (326) T 1xov_A 14 SNYSMSRGHSDKCVGAED--ILSEIKEAEKVLNAASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVH 91 (326) T ss_dssp CEEEEEEEEETTBCCCBS--SSBHHHHHHHHHHHHHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEE T ss_pred EEEEEECCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 189998998959999806--733999999999999999985799799997348985116899999999852999999944 Q ss_pred CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 35677887425899852788870789999974102333113332103678999999887410788999999999988751 Q T0585 83 ADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKS 162 (234) Q Consensus 83 ~ns~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~la~~i~~~l~~~ 162 (234) +||+ +++|++|||++... .++.||+.|++++.+. T Consensus 92 ~Ns~---~a~G~ev~~~~~~~-------------------------------------------~s~~LA~~I~~~l~~~ 125 (326) T 1xov_A 92 LNAG---KGTGVEVWYYAGDE-------------------------------------------KGRKLAVEISAKMAKA 125 (326) T ss_dssp EECS---SCCSEEEEEETTCH-------------------------------------------HHHHHHHHHHHHHHHH T ss_pred CCCC---CCCCEEEEEECCCH-------------------------------------------HHHHHHHHHHHHHHHH T ss_conf 4798---98765999956866-------------------------------------------8999999999999985 Q ss_pred CCCCCCCCEE-CCCCEEEECCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1664568500-4860264069897776654038898999872398899999999999999999 Q T0585 163 HINLINNPHR-YADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFA 224 (234) Q Consensus 163 ~~~~~~~~~~-~~~l~vlr~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~y~ 224 (234) .+..+||++ ..+|++||.+.||+||||+|||||+.|+++|.++++|+++|+||++||..++ T Consensus 126 -~g~~nRGvk~~~~l~vLr~t~~PaVLvE~gFisN~~D~~~l~~~~~~~~lA~AIa~gI~~~~ 187 (326) T 1xov_A 126 -LGLPNRGAKATKDLRFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGLTGKT 187 (326) T ss_dssp -HTCCEEEEEEESCCHHHHHCSSCEEEEEEEETTCHHHHHHHTSTTHHHHHHHHHHHHHHSSC T ss_pred -CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC T ss_conf -49987886745999980128866199983355898999886499999999999999743985 No 3 >3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58} Probab=100.00 E-value=2.9e-43 Score=287.04 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=142.5 Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 89982787788997508888406888999999999999956991999873888747989999999844997899860356 Q T0585 6 RVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADT 85 (234) Q Consensus 6 ~IvIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSiH~ns 85 (234) +|||||||||.||||++ +|+.|+++||++|++|+++|++.|..+|++||++|.++++.+|.+.++ +||+|||||+|+ T Consensus 5 ~I~ID~GHGg~d~Ga~~-~g~~E~~~~l~ia~~l~~~L~~~g~~~v~~~~~~d~~~~~~~r~~~a~--~adl~ISiH~Na 81 (182) T 3czx_A 5 IICLTAGHSNTDPGAVN-GSDREADLAQDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIR--GSDVAIEFHTNA 81 (182) T ss_dssp CEEEEECCCSSSCCCEE-TTEEHHHHHHHHHHHHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHH--TCSEEEEECCBC T ss_pred EEEEECCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHC--CCCEEEEEECCC T ss_conf 99998999979988688-992108999999999999998579989998899987579999999860--799999981488 Q ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 77887425899852788870789999974102333113332103678999999887410788999999999988751166 Q T0585 86 IDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHIN 165 (234) Q Consensus 86 ~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~la~~i~~~l~~~~~~ 165 (234) +++++++|+++||++... . .+..+++.+.+.+.... T Consensus 82 ~~~~~~~G~ev~~~~~~~--~----------------------------------------~a~~l~~~l~~~~~~~~-- 117 (182) T 3czx_A 82 AANKTATGIEALSTPKNK--R----------------------------------------WCQVLGKAVAKKTGWKL-- 117 (182) T ss_dssp CSSTTCCCBEEEECGGGH--H----------------------------------------HHHHHHHHHHHHHCCCB-- T ss_pred CCCCCCCEEEEEEECCCH--H----------------------------------------HHHHHHHHHHHHHHHCC-- T ss_conf 889986889999978998--9----------------------------------------99999999999870445-- Q ss_pred CCCCCEE---CCCCEEEECCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4568500---4860264069897776654038898999872398899999999999999999840 Q T0585 166 LINNPHR---YADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYR 227 (234) Q Consensus 166 ~~~~~~~---~~~l~vlr~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~y~~~~ 227 (234) ...++.+ ..+|++|+.++||+||||+|||||+.|.++|.+ .++++|++|++||.+||... T Consensus 118 ~~~~g~~~~~~~~~~~L~~t~~PavLiE~gFisN~~D~~~l~~--~~~~~A~aia~gI~~~lg~~ 180 (182) T 3czx_A 118 RGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKT--TKWGICRAIADAIAMELGAA 180 (182) T ss_dssp CTBTTEEEGGGCCCTTHHHHHTTCEEEECSBTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHTCC T ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC T ss_conf 5756755667575065404899868888734589999999871--99999999999999998108 No 4 >2gfq_A UPF0204 protein PH0006; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pyrococcus horikoshii OT3} SCOP: c.56.7.1 Probab=82.74 E-value=1.6 Score=21.44 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=63.7 Q ss_pred CHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 989999999844997--899860356778874258998527888707899999741023331133321036789999998 Q T0585 62 RLSERVKKAQEFDAD--LFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDL 139 (234) Q Consensus 62 sl~~R~~~A~~~~ad--l~iSiH~ns~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 139 (234) .|.+|...+-...+| +|+|=|.-.++.+. .++-..++..... +.+.+..........+ T Consensus 80 ~lD~~~~~~~g~~~d~iif~SrH~s~s~~ps---LTvH~~Gn~~~a~--------------~GG~~~~~~~a~P~~~--- 139 (298) T 2gfq_A 80 YLDREIENQLGFKPEIIAFASRHSSKQKLPA---LTTHVTGNWGKAM--------------YGGKDESFAVAIPSAM--- 139 (298) T ss_dssp THHHHHHHHHSCCCSEEEEEEEEECSSCCCE---EEEECCEESSCCS--------------SSSCTTEECBBCHHHH--- T ss_pred CCCHHHHHHHCCCCCEEEEEECCCCCCCCCE---EEEECCCCCCCCC--------------CCCCCCCCCCCCCHHH--- T ss_conf 2015778873789657999852346789834---8974798878766--------------7898986455898899--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEE--------CCCCCEEEEEEECCCCHHHHHHHCCHHHHHH Q ss_conf 87410788999999999988751166456850048602640--------6989777665403889899987239889999 Q T0585 140 TRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLK--------APDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ 211 (234) Q Consensus 140 ~~~~~~~~s~~la~~i~~~l~~~~~~~~~~~~~~~~l~vlr--------~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~ 211 (234) ..+...+.+.. ...|.|.- ....|++.||+|- ..+.|.++...+. T Consensus 140 -------------~~~l~~l~~~~---------~~~fevt~EaTHHGPt~l~~Ps~FiEIGS-----te~~W~~~~aa~~ 192 (298) T 2gfq_A 140 -------------KLSLLKMSELN---------DLGWTVCYEATHHGPTELEVPSFFIEIGS-----SEEEWINDRAGEI 192 (298) T ss_dssp -------------HHHHHHHHHHC---------CSCCEEEECCSCSSCCCCCSBEEEEEEEE-----SHHHHTCHHHHHH T ss_pred -------------HHHHHHHHHHC---------CCCCEEEEEEECCCCCCCCCCEEEEEECC-----CHHHHCCCHHHHH T ss_conf -------------99999999757---------67854899874248866899749999578-----7898389479999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999840 Q T0585 212 MAASIAYSIRQFAEYR 227 (234) Q Consensus 212 lA~aia~gI~~y~~~~ 227 (234) +|++|..++..+-... T Consensus 193 ~A~~i~~~l~~~~~~~ 208 (298) T 2gfq_A 193 IAETIIYVLDNYEKGR 208 (298) T ss_dssp HHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCCC T ss_conf 9999998715655666 No 5 >1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1 Probab=79.60 E-value=2.7 Score=20.03 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=27.8 Q ss_pred CCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 9897776654038898999872398899999999999999 Q T0585 182 PDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIR 221 (234) Q Consensus 182 ~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~ 221 (234) .+.|++.||+|- ..+.|.++...+.+|++|.+++. T Consensus 148 l~~P~~FiEIGS-----te~~W~~~~a~~~~A~~i~~~~~ 182 (282) T 1yqe_A 148 ISKPSAFYEIGS-----TEEEWKDREAAEVVAEAMLDAIR 182 (282) T ss_dssp CCSCEEEEEEEE-----SHHHHTCHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEECC-----CHHHHCCCHHHHHHHHHHHHHCC T ss_conf 789749999678-----78984891899999999997603 No 6 >1y37_A Fluoroacetate dehalogenase; hydrolase; 1.50A {Burkholderia SP} Probab=64.18 E-value=6.2 Score=17.78 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=26.6 Q ss_pred EEEEEE-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 589982-7877889975088884068889999999999999569919998 Q T0585 5 FRVVLD-PGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVAL 53 (234) Q Consensus 5 ~~IvID-pGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~ 53 (234) -+|++| ||||+.|....... .+..-..+++..+...|++.|...+.+ T Consensus 53 ~vi~~D~~G~G~S~~~~~~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~l 100 (304) T 1y37_A 53 TVVCADLRGYGGSSKPVGAPD--HANYSFRAMASDQRELMRTLGFERFHL 100 (304) T ss_dssp EEEEECCTTSTTSCCCCCCTT--CGGGSHHHHHHHHHHHHHHTTCSSEEE T ss_pred EEEEEECCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCEE T ss_conf 899995898877766653222--344201223466788898629985112 No 7 >3k2k_A Putative carboxypeptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.49A {Burkholderia mallei atcc 23344} Probab=62.45 E-value=6.6 Score=17.62 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.6 Q ss_pred CCCEEEEEEECCCCHH---HHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8977766540388989---9987239889999999999999999984 Q T0585 183 DVPSVLIEIGYLSNKE---DEKLLNNPQWRKQMAASIAYSIRQFAEY 226 (234) Q Consensus 183 ~~PaVLiE~gFisN~~---D~~~l~~~~~~~~lA~aia~gI~~y~~~ 226 (234) ++|++.+|+.|..+.. +...+ +++--..++.+++.+++.|++. T Consensus 356 gi~s~TlE~sf~~~~~~p~~~~~~-~~~~~~~lg~a~~~all~yl~~ 401 (403) T 3k2k_A 356 GCLSLTLEMPFKDNANLPDEHIGW-NGARSASLGAAMLGAILEHVRA 401 (403) T ss_dssp CSEEEEEEEESSCCTTSCCTTTSS-CHHHHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHH T ss_conf 947999982457877788755781-9999999999999999999996 No 8 >1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal complex, isomerase; 2.00A {Pyrococcus horikoshii} Probab=61.84 E-value=6.9 Score=17.51 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=9.8 Q ss_pred CCEEEEEECCCCC Q ss_conf 9658998278778 Q T0585 3 ASFRVVLDPGHGG 15 (234) Q Consensus 3 ~~~~IvIDpGHGG 15 (234) ..++|++|++||- T Consensus 173 ~~~~iv~d~~~G~ 185 (455) T 1wqa_A 173 RKPFVVVDTSNGA 185 (455) T ss_dssp HCCEEEEECTTSG T ss_pred CCCEEEEECCCCC T ss_conf 4330578558883 No 9 >2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics, NPPSFA; 2.52A {Thermus thermophilus HB8} Probab=47.54 E-value=8.8 Score=16.85 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=5.6 Q ss_pred CEEEEEECCCC Q ss_conf 65899827877 Q T0585 4 SFRVVLDPGHG 14 (234) Q Consensus 4 ~~~IvIDpGHG 14 (234) .++|++||+|| T Consensus 210 ~lkvvvd~~~G 220 (524) T 2z0f_A 210 GLRIGVDPLGG 220 (524) T ss_dssp CCCEEEECTTS T ss_pred CCEEEEECCCC T ss_conf 98899967976 No 10 >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Probab=46.28 E-value=12 Score=15.94 Aligned_cols=38 Identities=13% Similarity=-0.031 Sum_probs=24.0 Q ss_pred EECCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4069897776654038898999872398899999999999999999840 Q T0585 179 LKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYR 227 (234) Q Consensus 179 lr~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~y~~~~ 227 (234) .....+|+|.+|+|-.. ..+ ...++..++||.+++... T Consensus 203 a~~~GipavtvE~Gg~~-------~~~----~~~v~~~~~gI~n~L~~l 240 (354) T 3cdx_A 203 VERRGIVSLGTELGGWG-------RVN----IEGVRIGKRGILNVLKHM 240 (354) T ss_dssp HHHTTCEEEEEECCCTT-------SCC----HHHHHHHHHHHHHHHHHT T ss_pred HHHCCCCEEEEECCCCC-------EEC----HHHHHHHHHHHHHHHHHC T ss_conf 99779836888727785-------167----899999999999999974 No 11 >2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1 Probab=46.18 E-value=10 Score=16.45 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999995699199987388874798999999984499789986 Q T0585 34 AFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISI 81 (234) Q Consensus 34 ~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSi 81 (234) .+...|.+.|++.|+.++....-.|....+.+....+-..++|+.|.- T Consensus 29 ~~~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~~~~~~~~~~DlVItt 76 (167) T 2g2c_A 29 LLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167) T ss_dssp HHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999999999997896899998649808889999999985699899960 No 12 >1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme-ligand complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3bkq_X* 3c04_A* 2fkm_X* Probab=44.46 E-value=13 Score=15.77 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.5 Q ss_pred CCCEEEEEECCCCC Q ss_conf 99658998278778 Q T0585 2 NASFRVVLDPGHGG 15 (234) Q Consensus 2 ~~~~~IvIDpGHGG 15 (234) .+.++||+|++||- T Consensus 170 ~~~lkiviD~~~G~ 183 (463) T 1p5d_X 170 AKPMKVVVDCGNGV 183 (463) T ss_dssp SSCEEEEEECTTSG T ss_pred CCCCEEEEECCCCH T ss_conf 59988999899870 No 13 >2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* Probab=40.68 E-value=15 Score=15.40 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=41.8 Q ss_pred EEEEECCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 89982787788-------------------99750888840688899999999999995699199987388 Q T0585 6 RVVLDPGHGGI-------------------DGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDS 57 (234) Q Consensus 6 ~IvIDpGHGG~-------------------D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~ 57 (234) .-|.|-|-||. |..-. ++|.+.++.-.+++..+.+.|.+.|...+++-.++ T Consensus 27 IgvfDSGvGGLtvl~~l~~~lP~~~~iY~~D~a~~-PYG~Ks~e~i~~~~~~~~~~L~~~~~~~IVIACNT 96 (290) T 2vvt_A 27 IGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARC-PYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNT 96 (290) T ss_dssp EEEEESSSTTHHHHHHHHHHCTTSCEEEEECTTTC-CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHH T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 89996896789999999997899898999447899-98989999999999999999985378879996484 No 14 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* Probab=36.71 E-value=17 Score=15.02 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=41.0 Q ss_pred EEEEECCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 89982787788-------------------9975088884068889999999999999569919998738887 Q T0585 6 RVVLDPGHGGI-------------------DGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDI 59 (234) Q Consensus 6 ~IvIDpGHGG~-------------------D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~ 59 (234) .-+.|-|=||. |... .++|-++.+.-.+++..+.+.|+++|...+++-.++-. T Consensus 3 IgvfDSG~GGLtv~~~i~~~~p~~~~iY~~D~a~-~PYG~ks~~~i~~~~~~~~~~l~~~~~~~IViACNTas 74 (255) T 2jfz_A 3 IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSAR-VPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTAS 74 (255) T ss_dssp EEEEESSSTTHHHHHHHHHTTCCSEEEEEECTTT-CCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHH T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH T ss_conf 9999389767999999998789999899944788-99898999999999999999999749988997365899 No 15 >1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A Probab=33.41 E-value=14 Score=15.63 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.4 Q ss_pred CCCEEEEEECCCCC Q ss_conf 99658998278778 Q T0585 2 NASFRVVLDPGHGG 15 (234) Q Consensus 2 ~~~~~IvIDpGHGG 15 (234) .+.++|++||+||- T Consensus 228 ~~~lkiv~d~~~G~ 241 (572) T 1kfi_A 228 NKDFSFRFDGMHGV 241 (572) T ss_dssp CTTCCEEEECTTST T ss_pred CCCCEEEEECCCCC T ss_conf 57853999778763 No 16 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=32.00 E-value=21 Score=14.54 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=36.0 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEECCCC Q ss_conf 9999999956991999873888747989999999844997-8998603567 Q T0585 37 RALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDAD-LFISIHADTI 86 (234) Q Consensus 37 ~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~ad-l~iSiH~ns~ 86 (234) ..++..|+..|+.|+++-. +.+..+-++.+.+.++| ++||+..... T Consensus 21 ~mva~~l~~~G~~V~~LG~----~~p~e~iv~~~~~~~~d~V~lS~~~~~~ 67 (137) T 1ccw_A 21 KILDHAFTNAGFNVVNIGV----LSPQELFIKAAIETKADAILVSSLYGQG 67 (137) T ss_dssp HHHHHHHHHTTCEEEEEEE----EECHHHHHHHHHHHTCSEEEEEECSSTH T ss_pred HHHHHHHHHCCCEEEECCC----CCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999987986997787----6799999999986399889775024222 No 17 >2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} Probab=30.06 E-value=22 Score=14.34 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=17.4 Q ss_pred CCHHHHHHHHH----HCCCCEEEEEECCCC Q ss_conf 79899999998----449978998603567 Q T0585 61 LRLSERVKKAQ----EFDADLFISIHADTI 86 (234) Q Consensus 61 ~sl~~R~~~A~----~~~adl~iSiH~ns~ 86 (234) -++.+|...+- ...+|++|.+|..+. T Consensus 116 gs~~e~~a~~~~~~l~~~aD~~iDLHs~~~ 145 (332) T 2qj8_A 116 GSVSERIADAISRLLLPVVDTVLDLHSFGP 145 (332) T ss_dssp SCHHHHHHHHHHHHTGGGCSEEEEEEEEET T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCCCC T ss_conf 766789999987502344769998446877 No 18 >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} Probab=29.87 E-value=22 Score=14.32 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=42.6 Q ss_pred CCCEEEEEECCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 996589982787788-------------------99750888840688899999999999995699199987388 Q T0585 2 NASFRVVLDPGHGGI-------------------DGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDS 57 (234) Q Consensus 2 ~~~~~IvIDpGHGG~-------------------D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~ 57 (234) |++ .-|.|-|-||. |..-. ++|.+.++.-.+.+..+.+.|.+.|...+++-.++ T Consensus 22 ~~p-IgvfDSGvGGltv~~~l~~~lP~~~~iY~~D~~~~-PYG~ks~eeI~~~~~~i~~~L~~~g~~~iVIACNT 94 (286) T 2jfq_A 22 NKP-IGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRC-PYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNT 94 (286) T ss_dssp CSC-EEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTC-CCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHH T ss_pred CCC-EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 998-89997897779999999997899998999558889-88889999999999999999985699989993575 No 19 >1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} SCOP: c.1.21.1 PDB: 1ad4_A* Probab=29.32 E-value=13 Score=15.81 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=16.2 Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 9827877889975088884068889999999999999569 Q T0585 8 VLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGS 47 (234) Q Consensus 8 vIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g 47 (234) +||-|=--.-||+. . +.+.+.--++...++. |.+.+ T Consensus 42 iIDIGaeSTrPga~-~--is~~eE~~Rl~pvi~~-l~~~~ 77 (266) T 1ad1_A 42 IIDVGGVSTRPGHE-M--ITVEEELNRVLPVVEA-IVGFD 77 (266) T ss_dssp EEEEESCCCSTTCC-C--CCHHHHHHHHHHHHHH-HTTSS T ss_pred EEEECCCCCCCCCC-C--CCHHHHHHHHHHHHHH-HHCCC T ss_conf 99979862899998-6--5989998873066766-51479 No 20 >1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1 Probab=26.89 E-value=25 Score=14.00 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH-HHCCCCEEEEEE Q ss_conf 999999999956991999873888747989999999-844997899860 Q T0585 35 FARALRDELQKGSHTIVALTRDSDIFLRLSERVKKA-QEFDADLFISIH 82 (234) Q Consensus 35 iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A-~~~~adl~iSiH 82 (234) -...|...|+..|+.++....-.|....+.+....+ ...++|++|.-= T Consensus 32 ~Gp~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlIiTtG 80 (169) T 1y5e_A 32 SGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNG 80 (169) T ss_dssp HHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEEC T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 0999999999779956786563587999999999875256675899843 No 21 >2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium LT2} Probab=26.59 E-value=26 Score=13.96 Aligned_cols=15 Identities=40% Similarity=0.508 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999999956 Q T0585 32 TLAFARALRDELQKG 46 (234) Q Consensus 32 ~l~iA~~l~~~L~~~ 46 (234) ..+++.-+..+|.+. T Consensus 64 v~~i~~a~~~~l~~~ 78 (549) T 2fuv_A 64 ILAIAQAIAEERAKN 78 (549) T ss_dssp HHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999999961 No 22 >2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} Probab=26.47 E-value=26 Score=13.95 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=41.6 Q ss_pred CCCEEEEEECCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 996589982787788-------------------99750888840688899999999999995699199987388 Q T0585 2 NASFRVVLDPGHGGI-------------------DGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDS 57 (234) Q Consensus 2 ~~~~~IvIDpGHGG~-------------------D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~ 57 (234) |++ .-+.|-|-||. |... .++|.+.++.-.+.+..+.+.|.+.|...+++-.++ T Consensus 3 n~p-IgifDSGiGGltv~~~l~~~~P~~~~iY~~D~a~-~PYG~ks~e~i~~~~~~~~~~l~~~~~~~IViACNT 75 (267) T 2gzm_A 3 NRA-IGVIDSGVGGLTVAKELIRQLPKERIIYLGDTAR-CPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNT 75 (267) T ss_dssp TSC-EEEEESSSTTHHHHHHHHHHCTTSCEEEEECTTT-CCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHH T ss_pred CCC-EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 997-8999889667999999999789999899955888-998999999999999999999986699989994670 No 23 >2vef_A Dihydropteroate synthase; antibiotic resistance, folic acid, transferase, biosynthesis, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* Probab=25.56 E-value=16 Score=15.17 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=7.5 Q ss_pred HHHHHHCCCCEEEEEE Q ss_conf 9999844997899860 Q T0585 67 VKKAQEFDADLFISIH 82 (234) Q Consensus 67 ~~~A~~~~adl~iSiH 82 (234) ++.|-+.++|+.=.|- T Consensus 98 a~~al~~GadiINDVs 113 (314) T 2vef_A 98 AEAALAAGADLVNDIT 113 (314) T ss_dssp HHHHHHTTCCEEEETT T ss_pred HHHHHHCCCCEEECCC T ss_conf 8999976972897242 No 24 >2dqw_A Dihydropteroate synthase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2dza_A* 2dzb_A* Probab=25.18 E-value=19 Score=14.77 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=7.3 Q ss_pred EEECCCCCCCCCCC Q ss_conf 98278778899750 Q T0585 8 VLDPGHGGIDGGAR 21 (234) Q Consensus 8 vIDpGHGG~D~Ga~ 21 (234) +||-|=--.-||+. T Consensus 68 iIDIGgeSTrPga~ 81 (294) T 2dqw_A 68 ILDLGAESTRPGAA 81 (294) T ss_dssp EEEEECC------- T ss_pred EEEEECCCCCCCCC T ss_conf 89960413344332 No 25 >2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structural genomics, NPPSFA; 1.64A {Thermus thermophilus HB8} Probab=24.67 E-value=28 Score=13.74 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=30.4 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH-HHHCCCCEEEE Q ss_conf 9999999995699199987388874798999999-98449978998 Q T0585 36 ARALRDELQKGSHTIVALTRDSDIFLRLSERVKK-AQEFDADLFIS 80 (234) Q Consensus 36 A~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~-A~~~~adl~iS 80 (234) +..|+++|+..|+.++..+--.|....+.+-.+. +...++|+.|. T Consensus 23 g~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 68 (164) T 2is8_A 23 HLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILT 68 (164) T ss_dssp HHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE T ss_pred HHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 9999999996899898999968888999999999974559988996 No 26 >3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A* Probab=24.43 E-value=24 Score=14.11 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=11.0 Q ss_pred CCEEEEEECCCCC Q ss_conf 9658998278778 Q T0585 3 ASFRVVLDPGHGG 15 (234) Q Consensus 3 ~~~~IvIDpGHGG 15 (234) +.++|++||+||- T Consensus 215 ~~lkIv~D~~~G~ 227 (561) T 3pmg_A 215 NRLKIRIDAMHGV 227 (561) T ss_dssp TCCCEEEECTTST T ss_pred CCCEEEEECCCCH T ss_conf 7846999557751 No 27 >2vp8_A Dihydropteroate synthase 2; RV1207, transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} Probab=22.76 E-value=20 Score=14.62 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHCCCEEEEE Q ss_conf 99999999999569919998 Q T0585 34 AFARALRDELQKGSHTIVAL 53 (234) Q Consensus 34 ~iA~~l~~~L~~~g~~vv~~ 53 (234) +-|......+...|...+-+ T Consensus 65 ~~al~~a~~~i~~GAdIIDI 84 (318) T 2vp8_A 65 AAARDAVHRAVADGADVIDV 84 (318) T ss_dssp HHHHHHHHHHHHTTCSEEEE T ss_pred HHHHHHHHHHHHCCCCEEEE T ss_conf 99999999999879988997 No 28 >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Probab=21.86 E-value=32 Score=13.40 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=39.6 Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-------------C------ Q ss_conf 999658998278778899750888840688899999999999995699199987388874-------------7------ Q T0585 1 SNASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIF-------------L------ 61 (234) Q Consensus 1 ~~~~~~IvIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~-------------~------ 61 (234) ++++.+|+|-+| |. | | .++. +..|++.|.+.|+.|.+++..+... + T Consensus 3 ~~~~~ril~~~~--gt-----g--G----Hi~~--~~alA~~L~~~Gh~V~~v~~~~~~~~~~~~~~g~~~~~l~~~~~~ 67 (364) T 1f0k_A 3 SGQGKRLMVMAG--GT-----G--G----HVFP--GLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLR 67 (364) T ss_dssp ----CEEEEECC--SS-----H--H----HHHH--HHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCT T ss_pred CCCCCEEEEECC--CC-----H--H----HHHH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCC T ss_conf 999987999917--84-----6--8----7999--999999999788979999788706554444429708998457867 Q ss_pred ----------------CHHHHHHHHHHCCCCEEEEEECC Q ss_conf ----------------98999999984499789986035 Q T0585 62 ----------------RLSERVKKAQEFDADLFISIHAD 84 (234) Q Consensus 62 ----------------sl~~R~~~A~~~~adl~iSiH~n 84 (234) .+....+......+|+.|+.+.. T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDvvi~~~~~ 106 (364) T 1f0k_A 68 GKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGY 106 (364) T ss_dssp TCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSST T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 777899998699999999999999750299789978973 No 29 >3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* Probab=21.82 E-value=32 Score=13.40 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=40.6 Q ss_pred EEEEECCCCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 89982787788-------------------99750888840688899999999999995699199987388 Q T0585 6 RVVLDPGHGGI-------------------DGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDS 57 (234) Q Consensus 6 ~IvIDpGHGG~-------------------D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~ 57 (234) .-+.|-|=||. |... .++|.+.++.-.+++..+.+.|.+.+...+++-.++ T Consensus 8 IgvfDSGvGGLsvl~~l~~~lP~~~~iY~~D~~~-~PYG~ks~~~i~~~~~~~~~~l~~~~~~~iviACNT 77 (269) T 3ist_A 8 IGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTAR-CPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNT 77 (269) T ss_dssp EEEEESSSTTHHHHHHHHHHCTTCCEEEEECGGG-CCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHH T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 8999689767999999999789999899963788-998999999999999999999997699989995586 Done!