Query T0585 APC62366.1, Bartonella henselae, 234 residues Match_columns 234 No_of_seqs 114 out of 1820 Neff 8.1 Searched_HMMs 15564 Date Sun Jun 13 15:25:44 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0585.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0585.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1jwqa_ c.56.5.6 (A:) N-acetyl 100.0 0 0 331.7 19.8 176 6-227 3-179 (179) 2 d1xova2 c.56.5.6 (A:1-180) End 100.0 1.9E-42 0 281.0 15.8 168 6-222 3-173 (180) 3 d2gfqa1 c.56.7.1 (A:1-274) Hyp 82.4 1.2 7.6E-05 21.3 4.7 120 62-228 58-187 (274) 4 d1p5dx2 c.84.1.1 (X:155-258) P 82.3 1.5 9.7E-05 20.6 5.8 66 2-86 16-92 (104) 5 d2gfqa1 c.56.7.1 (A:1-274) Hyp 79.8 1.6 0.0001 20.4 4.7 40 182-226 146-185 (274) 6 d1yqea1 c.56.7.1 (A:1-278) Hyp 75.0 2.5 0.00016 19.2 8.0 35 182-221 144-178 (278) 7 d1kfqa2 c.84.1.1 (A:206-323) E 63.7 1.5 9.6E-05 20.7 1.4 14 2-15 23-36 (118) 8 d3pmga2 c.84.1.1 (A:191-303) P 60.0 1.9 0.00012 20.0 1.4 66 2-86 24-101 (113) 9 d1kfia2 c.84.1.1 (A:206-323) E 59.9 2 0.00013 19.8 1.6 14 2-15 23-36 (118) 10 d2naca2 c.23.12.1 (A:1-147,A:3 50.2 7.4 0.00048 16.3 4.0 39 38-81 58-96 (186) 11 d2g2ca1 c.57.1.1 (A:1-163) Put 41.2 8.4 0.00054 16.0 2.3 49 33-81 25-73 (163) 12 d1eyea_ c.1.21.1 (A:) Dihydrop 34.9 6.3 0.00041 16.7 0.9 13 8-20 41-53 (270) 13 d1nyra1 c.51.1.1 (A:533-645) T 33.3 14 0.00087 14.7 7.5 52 30-85 24-75 (113) 14 d1iowa1 c.30.1.2 (A:1-96) D-Al 32.2 14 0.00091 14.6 4.1 56 26-88 13-69 (96) 15 d1eyea_ c.1.21.1 (A:) Dihydrop 29.2 9 0.00058 15.8 0.9 37 8-48 41-77 (270) 16 d1ccwa_ c.23.6.1 (A:) Glutamat 27.2 17 0.0011 14.0 6.3 46 37-86 21-67 (137) 17 d1uoza_ c.6.1.1 (A:) Putative 25.1 19 0.0012 13.8 4.2 15 89-103 187-201 (301) 18 d1g5ha1 c.51.1.1 (A:343-469) T 24.4 20 0.0013 13.7 7.1 56 30-86 25-80 (127) 19 d2ftsa3 c.57.1.2 (A:499-653) G 24.1 20 0.0013 13.7 4.3 45 36-81 29-73 (155) 20 d1ad1a_ c.1.21.1 (A:) Dihydrop 21.9 15 0.00096 14.4 0.9 36 8-47 42-77 (264) 21 d1y5ea1 c.57.1.1 (A:12-166) Mo 20.7 23 0.0015 13.2 4.9 48 35-82 21-69 (155) 22 d1qf6a1 c.51.1.1 (A:533-642) T 20.5 23 0.0015 13.2 7.2 51 32-86 19-69 (110) No 1 >d1jwqa_ c.56.5.6 (A:) N-acetylmuramoyl-L-alanine amidase CwlV {Paenibacillus polymyxa [TaxId: 1406]} Probab=100.00 E-value=0 Score=331.73 Aligned_cols=176 Identities=34% Similarity=0.571 Sum_probs=159.7 Q ss_pred EEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 899827877889975088-8840688899999999999995699199987388874798999999984499789986035 Q T0585 6 RVVLDPGHGGIDGGARGV-TGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHAD 84 (234) Q Consensus 6 ~IvIDpGHGG~D~Ga~g~-~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSiH~n 84 (234) +|||||||||.||||+|. +|+.|+++||++|++|+++|++.+..+|++||++|.+++|.+|+..||+.+||+|||||+| T Consensus 3 vIviDpGHGG~d~Ga~g~~~~~~E~~~~l~ia~~l~~~L~~~~~~~v~~tr~~D~~~~l~~R~~~an~~~ad~~iSiH~N 82 (179) T d1jwqa_ 3 VVVIDAGHGAKDSGAVGISRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHAN 82 (179) T ss_dssp EEEEEECCBTTBCCSBCTTSSCBHHHHHHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCC T ss_conf 99993999989998557899820189999999999999986328500023688752337888787644488779986457 Q ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 67788742589985278887078999997410233311333210367899999988741078899999999998875116 Q T0585 85 TIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHI 164 (234) Q Consensus 85 s~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~la~~i~~~l~~~~~ 164 (234) |++++.++|+++||++.. +..+|+.+++++... . T Consensus 83 a~~~~~~~G~e~~~~~~~---------------------------------------------s~~la~~i~~~l~~~-~ 116 (179) T d1jwqa_ 83 SSGSSASNGTETYYQRSA---------------------------------------------SKAFANVMHKYFAPA-T 116 (179) T ss_dssp CCSSTTCCCEEEEECSGG---------------------------------------------GHHHHHHHHHHHHHH-H T ss_pred CCCCCCCCEEEEEEEECC---------------------------------------------CHHHHHHHHHHHHHH-C T ss_conf 789987764999975121---------------------------------------------477899999877652-2 Q ss_pred CCCCCCEECCCCEEEECCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 645685004860264069897776654038898999872398899999999999999999840 Q T0585 165 NLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYR 227 (234) Q Consensus 165 ~~~~~~~~~~~l~vlr~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~y~~~~ 227 (234) +..++|++.++|++||.+.||+||||+||||||+|+++|.++++|+++|++|++||.+||++| T Consensus 117 ~~~~rgvk~~~l~vLr~t~~PavLvE~gFisN~~D~~~l~~~~~~~~iA~aia~gI~~y~~~k 179 (179) T d1jwqa_ 117 GLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK 179 (179) T ss_dssp CSCEEEEEECCCHHHHSCSSCEEEEEEEETTSHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCC T ss_pred CCCCCCEEECCEEEEECCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 887787246666776068998489985167998999986499999999999999999998059 No 2 >d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain {Bacteriophage Psa [TaxId: 171618]} Probab=100.00 E-value=1.9e-42 Score=281.03 Aligned_cols=168 Identities=20% Similarity=0.287 Sum_probs=146.2 Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE-CC-CCCCCCHHHHHHHHHHCCCCEEEEEEC Q ss_conf 8998278778899750888840688899999999999995699199987-38-887479899999998449978998603 Q T0585 6 RVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALT-RD-SDIFLRLSERVKKAQEFDADLFISIHA 83 (234) Q Consensus 6 ~IvIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~t-r~-~D~~~sl~~R~~~A~~~~adl~iSiH~ 83 (234) +++|||||||.||||+| ++.|+++++++|++|+++|++.|+.|++++ |. +|.+++|.+|+..||+.+||+|||||+ T Consensus 3 ~~~idaGHgg~d~GA~g--~~~E~~~~~~ia~~l~~~L~~~G~~V~~~~~~~~~~~~~~L~~R~~~an~~~aDl~iSiH~ 80 (180) T d1xova2 3 NYSMSRGHSDKCVGAED--ILSEIKEAEKVLNAASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHL 80 (180) T ss_dssp EEEEEEEEETTBCCCBS--SSBHHHHHHHHHHHHHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEE T ss_pred EEEEECCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECC T ss_conf 59997999959998848--8427999999999999999967992899974589855568999999998539999999324 Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 56778874258998527888707899999741023331133321036789999998874107889999999999887511 Q T0585 84 DTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSH 163 (234) Q Consensus 84 ns~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~la~~i~~~l~~~~ 163 (234) ||+ +++|++|||++... .+..||..|+.++... T Consensus 81 Na~---~~~G~ev~~~~~~~-------------------------------------------~s~~lA~~i~~~l~~~- 113 (180) T d1xova2 81 NAG---KGTGVEVWYYAGDE-------------------------------------------KGRKLAVEISAKMAKA- 113 (180) T ss_dssp ECS---SCCSEEEEEETTCH-------------------------------------------HHHHHHHHHHHHHHHH- T ss_pred CCC---CCCCEEEEECCCCH-------------------------------------------HHHHHHHHHHHHHHHC- T ss_conf 689---98766998457866-------------------------------------------8999999999978742- Q ss_pred CCCCCCCEEC-CCCEEEECCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 6645685004-8602640698977766540388989998723988999999999999999 Q T0585 164 INLINNPHRY-ADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQ 222 (234) Q Consensus 164 ~~~~~~~~~~-~~l~vlr~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~ 222 (234) .+.++||++. .+|++||++.||+||||+|||||+.|+++|.++++|+++|++|++||.. T Consensus 114 ~g~~nRgvk~~~~l~vlr~t~~PavLvE~gFisN~~d~~~l~~~~~~~~~A~ai~~gI~~ 173 (180) T d1xova2 114 LGLPNRGAKATKDLRFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGLTG 173 (180) T ss_dssp HTCCEEEEEEESCCHHHHHCSSCEEEEEEEETTCHHHHHHHTSTTHHHHHHHHHHHHHHS T ss_pred CCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHCC T ss_conf 488767615678853220478877999834769989999873999999999999999659 No 3 >d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006 {Pyrococcus horikoshii [TaxId: 53953]} Probab=82.36 E-value=1.2 Score=21.29 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=65.1 Q ss_pred CHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 989999999844997--899860356778874258998527888707899999741023331133321036789999998 Q T0585 62 RLSERVKKAQEFDAD--LFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDL 139 (234) Q Consensus 62 sl~~R~~~A~~~~ad--l~iSiH~ns~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 139 (234) .|.+|...+-...+| +|+|=|.-.++.+. .++...++..... +++.+.......... T Consensus 58 ~ld~~~~~~~~~~~d~iif~SrH~s~s~~p~---LTvH~~Gn~~~~~--------------~GG~~~~~~~~~P~~---- 116 (274) T d2gfqa1 58 YLDREIENQLGFKPEIIAFASRHSSKQKLPA---LTTHVTGNWGKAM--------------YGGKDESFAVAIPSA---- 116 (274) T ss_dssp THHHHHHHHHSCCCSEEEEEEEEECSSCCCE---EEEECCEESSCCS--------------SSSCTTEECBBCHHH---- T ss_pred CCCHHHHHHHCCCCEEEEEEECCCCCCCCCE---EEEECCCCCCCCC--------------CCCCCCCCCCCCCHH---- T ss_conf 2046889873787418999862346789954---8985799878767--------------788898666489889---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEE--------CCCCCEEEEEEECCCCHHHHHHHCCHHHHHH Q ss_conf 87410788999999999988751166456850048602640--------6989777665403889899987239889999 Q T0585 140 TRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLK--------APDVPSVLIEIGYLSNKEDEKLLNNPQWRKQ 211 (234) Q Consensus 140 ~~~~~~~~s~~la~~i~~~l~~~~~~~~~~~~~~~~l~vlr--------~~~~PaVLiE~gFisN~~D~~~l~~~~~~~~ 211 (234) ...+...+.+... ..|.+.- ..+.|++.||+|- ..+.|.++...+. T Consensus 117 ------------~~~~l~~~~~~~~---------~~f~vt~EaTHHGPt~l~~Ps~FiEIGS-----te~~W~~~~a~~~ 170 (274) T d2gfqa1 117 ------------MKLSLLKMSELND---------LGWTVCYEATHHGPTELEVPSFFIEIGS-----SEEEWINDRAGEI 170 (274) T ss_dssp ------------HHHHHHHHHHHCC---------SCCEEEECCSCSSCCCCCSBEEEEEEEE-----SHHHHTCHHHHHH T ss_pred ------------HHHHHHHHHHHCC---------CCCEEEEEEECCCCCCCCCCEEEEEECC-----CHHHHCCCHHHHH T ss_conf ------------9999999997555---------6855899985248866789628999668-----8788189289999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999998400 Q T0585 212 MAASIAYSIRQFAEYRQ 228 (234) Q Consensus 212 lA~aia~gI~~y~~~~~ 228 (234) +|++|..++..+.+... T Consensus 171 ~A~~i~~~l~~~~~~~~ 187 (274) T d2gfqa1 171 IAETIIYVLDNYEKGRS 187 (274) T ss_dssp HHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCCCCCC T ss_conf 99999987367555676 No 4 >d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]} Probab=82.35 E-value=1.5 Score=20.61 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=41.5 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CC----------CCHHHHHHHH Q ss_conf 996589982787788997508888406888999999999999956991999873888-74----------7989999999 Q T0585 2 NASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSD-IF----------LRLSERVKKA 70 (234) Q Consensus 2 ~~~~~IvIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D-~~----------~sl~~R~~~A 70 (234) +++++|++|++||-. +. + +.+.|+..|..++.+....| .+ ..|.+-.+.. T Consensus 16 ~~~lkvvvD~~nGa~-----~~--~------------~~~ll~~~~~~~~~~~~~pd~~f~~~~p~p~~~~~l~~~~~~v 76 (104) T d1p5dx2 16 AKPMKVVVDCGNGVA-----GV--I------------APQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKV 76 (104) T ss_dssp SSCEEEEEECTTSGG-----GG--T------------HHHHHHHHHEEEEEESCSCCTTCCSSCSCTTSGGGGHHHHHHH T ss_pred CCCCEEEEECCCCHH-----HH--H------------HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 489889997896662-----78--8------------9998755087599805437999888688877899999999986 Q ss_pred HHCCCCEEEEEECCCC Q ss_conf 8449978998603567 Q T0585 71 QEFDADLFISIHADTI 86 (234) Q Consensus 71 ~~~~adl~iSiH~ns~ 86 (234) .+.++|+-|..--|+. T Consensus 77 ~~~~~dlGia~DgDaD 92 (104) T d1p5dx2 77 KAENADLGLAFDGDGD 92 (104) T ss_dssp HHTTCSEEEEECTTSS T ss_pred HCCCCEEEEEECCCCC T ss_conf 3468318999869887 No 5 >d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006 {Pyrococcus horikoshii [TaxId: 53953]} SCOP: d1yqea1 Probab=79.80 E-value=1.6 Score=20.41 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=31.5 Q ss_pred CCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 989777665403889899987239889999999999999999984 Q T0585 182 PDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEY 226 (234) Q Consensus 182 ~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~~y~~~ 226 (234) -..|++.||+|- ..+.|.++...+.+|++|.+++..+-.. T Consensus 146 l~~P~~FiEIGS-----te~~W~~~~a~~~~A~~i~~~l~~~~~~ 185 (274) T d2gfqa1 146 LEVPSFFIEIGS-----SEEEWINDRAGEIIAETIIYVLDNYEKG 185 (274) T ss_dssp CCSBEEEEEEEE-----SHHHHTCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEECC-----CHHHHCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 467668998538-----8457268589999999999983444454 No 6 >d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=75.02 E-value=2.5 Score=19.23 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=27.4 Q ss_pred CCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 9897776654038898999872398899999999999999 Q T0585 182 PDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIR 221 (234) Q Consensus 182 ~~~PaVLiE~gFisN~~D~~~l~~~~~~~~lA~aia~gI~ 221 (234) .+.|++.||+|- ..+.|.++...+.+|++|.+++. T Consensus 144 l~~P~~FiEIGS-----te~~W~d~~a~~~~A~~i~~~~~ 178 (278) T d1yqea1 144 ISKPSAFYEIGS-----TEEEWKDREAAEVVAEAMLDAIR 178 (278) T ss_dssp CCSCEEEEEEEE-----SHHHHTCHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEECC-----CHHHHCCCHHHHHHHHHHHHHCC T ss_conf 789639999668-----87881895799999999986303 No 7 >d1kfqa2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Probab=63.68 E-value=1.5 Score=20.65 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=9.6 Q ss_pred CCCEEEEEECCCCC Q ss_conf 99658998278778 Q T0585 2 NASFRVVLDPGHGG 15 (234) Q Consensus 2 ~~~~~IvIDpGHGG 15 (234) ++.++|++|++||- T Consensus 23 ~~~lkIvvD~~nGa 36 (118) T d1kfqa2 23 NKDFSFRFDGMHGV 36 (118) T ss_dssp CTTCCEEEECTTST T ss_pred CCCCEEEEECCCCC T ss_conf 89976988666313 No 8 >d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=60.04 E-value=1.9 Score=20.02 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=36.0 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCEE-EEEECCCC-CC---------CCHHHHHHH Q ss_conf 996589982787788997508888406888999999999999-9569919-99873888-74---------798999999 Q T0585 2 NASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDEL-QKGSHTI-VALTRDSD-IF---------LRLSERVKK 69 (234) Q Consensus 2 ~~~~~IvIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L-~~~g~~v-v~~tr~~D-~~---------~sl~~R~~~ 69 (234) .++++|++||+||-. + ..+.+.| ++.|..+ +.+....| .+ ..+.+-.+. T Consensus 24 ~~~lkIv~D~~nGa~-----~--------------~~~~~il~~~~g~~~~~~~~~~pd~~f~~~~p~p~~~~~~~l~~~ 84 (113) T d3pmga2 24 PNRLKIRIDAMHGVV-----G--------------PYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVET 84 (113) T ss_dssp TTCCCEEEECTTSTT-----H--------------HHHHHHHTTTTCCCGGGEESCSCCTTGGGSCCCCSTTTTHHHHHH T ss_pred CCCCEEEEECCCCCC-----C--------------CCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 789689997887756-----3--------------221999987259951797568567787962575212478998987 Q ss_pred HHHCCCCEEEEEECCCC Q ss_conf 98449978998603567 Q T0585 70 AQEFDADLFISIHADTI 86 (234) Q Consensus 70 A~~~~adl~iSiH~ns~ 86 (234) ..+.++|+-|..--|+- T Consensus 85 ~~~~~~dlgia~DgDaD 101 (113) T d3pmga2 85 MKSGEHDFGAAFDGDGD 101 (113) T ss_dssp HHTSCCSEEEEECTTSS T ss_pred HHCCCCEEEEEECCCCC T ss_conf 62368569999868876 No 9 >d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Probab=59.88 E-value=2 Score=19.83 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.0 Q ss_pred CCCEEEEEECCCCC Q ss_conf 99658998278778 Q T0585 2 NASFRVVLDPGHGG 15 (234) Q Consensus 2 ~~~~~IvIDpGHGG 15 (234) +++++|++||+||- T Consensus 23 ~~~lkvv~D~~nGa 36 (118) T d1kfia2 23 NKDFSFRFDGMHGV 36 (118) T ss_dssp CTTCCEEEECTTST T ss_pred CCCCEEEEECCCCC T ss_conf 48977999678887 No 10 >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Probab=50.17 E-value=7.4 Score=16.32 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=24.9 Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 99999995699199987388874798999999984499789986 Q T0585 38 ALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISI 81 (234) Q Consensus 38 ~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSi 81 (234) -|+++|++.|+..|..+..+..+..+.++. ..||+.|+= T Consensus 58 glr~~Le~~GhelV~~sd~~~~~~el~k~l-----~DADivI~~ 96 (186) T d2naca2 58 GLRKYLESNGHTLVVTSDKDGPDSVFEREL-----VDADVVISQ 96 (186) T ss_dssp GCHHHHHHTTCEEEEESCCSSTTSHHHHHH-----TTCSEEEEB T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHC-----CCCCEEEEE T ss_conf 179999978978998269889708998623-----568789981 No 11 >d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]} Probab=41.22 E-value=8.4 Score=15.97 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.0 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 9999999999995699199987388874798999999984499789986 Q T0585 33 LAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISI 81 (234) Q Consensus 33 l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSi 81 (234) -.+...|++.|++.|+.++....-.|..-.+.+....+-+.++|+.|.- T Consensus 25 ~~~~~~L~~~l~~~G~~v~~~~iv~D~~~~i~~~~~~a~~~~~DlVitt 73 (163) T d2g2ca1 25 PLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 73 (163) T ss_dssp HHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE T ss_pred HHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 8999999999874996999998614137889999876550377889964 No 12 >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} SCOP: d1tx2a_ d1aj2a_ d1ad1b_ d1ad1a_ d1ad4a_ Probab=34.93 E-value=6.3 Score=16.75 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=4.8 Q ss_pred EEECCCCCCCCCC Q ss_conf 9827877889975 Q T0585 8 VLDPGHGGIDGGA 20 (234) Q Consensus 8 vIDpGHGG~D~Ga 20 (234) +||-|=--.-||+ T Consensus 41 IIDIGaeSTrPga 53 (270) T d1eyea_ 41 IVDVGGESSRPGA 53 (270) T ss_dssp EEEEECC------ T ss_pred EEEECCEECCCCC T ss_conf 9974775068987 No 13 >d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Probab=33.35 E-value=14 Score=14.68 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=40.0 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 88999999999999956991999873888747989999999844997899860356 Q T0585 30 DVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADT 85 (234) Q Consensus 30 ~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSiH~ns 85 (234) +-..+.|..|...|.+.|+.+.+ ++...++..+.+.|+..++-+.|=|=-+- T Consensus 24 ~~~~~~a~~l~~~Lr~~gi~v~~----D~~~~~~g~k~~~a~~~g~p~~iiiG~~E 75 (113) T d1nyra1 24 DLHYDYARQLQDELKSQGVRVSI----DDRNEKMGYKIREAQMQKIPYQIVVGDKE 75 (113) T ss_dssp HHHHHHHHHHHHHHHTTTCCEEE----CCSSCCHHHHHHHHHHHTCSEEEEECHHH T ss_pred HHHHHHHHHHHHHHHHHCCCEEE----CCCCCCCCHHHHHHHHHCCEEEEEECCCC T ss_conf 78755678888776331041241----15201002678889984960999984360 No 14 >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} Probab=32.25 E-value=14 Score=14.57 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=35.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEECCCCCC Q ss_conf 406888999999999999956991999873888747989999999844997-899860356778 Q T0585 26 ILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDAD-LFISIHADTIDV 88 (234) Q Consensus 26 ~~E~~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~ad-l~iSiH~ns~~~ 88 (234) -.|+++-+.-|+.+.+.|.+.|+.+..+...++....+ ...+.| +|+.+|-.-..+ T Consensus 13 S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~~~-------~~~~~d~vF~~lHG~~GEd 69 (96) T d1iowa1 13 SAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL-------KSMGFQKVFIALHGRGGED 69 (96) T ss_dssp STTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT-------TTTTEEEEEECCCSTTTSS T ss_pred CHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHH-------HCCCCEEEEEECCCCCHHC T ss_conf 62247688669999999987592576406752100222-------0258506888512730014 No 15 >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=29.16 E-value=9 Score=15.79 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=16.3 Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 98278778899750888840688899999999999995699 Q T0585 8 VLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSH 48 (234) Q Consensus 8 vIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g~ 48 (234) +||-|=--.-||+.- +.+.+.--++...++. |+..+. T Consensus 41 iIDIGgeSTrPga~~---is~~eE~~Rl~p~i~~-~~~~~~ 77 (270) T d1eyea_ 41 IVDVGGESSRPGATR---VDPAVETSRVIPVVKE-LAAQGI 77 (270) T ss_dssp EEEEECC-----------------HHHHHHHHHH-HHHTTC T ss_pred EEEECCCCCCCCCEE---EECHHHCCCCCCEEEE-ECCCCE T ss_conf 999798237998976---2033113312313555-034322 No 16 >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Probab=27.19 E-value=17 Score=14.03 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=36.0 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEECCCC Q ss_conf 9999999956991999873888747989999999844997-8998603567 Q T0585 37 RALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDAD-LFISIHADTI 86 (234) Q Consensus 37 ~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~ad-l~iSiH~ns~ 86 (234) ..++..|+..|+.|+++-. +.+..+-++.|.+.++| ++||+..... T Consensus 21 ~mva~~l~~~G~~V~~LG~----~~p~e~iv~a~~~~~~d~v~lS~~~~~~ 67 (137) T d1ccwa_ 21 KILDHAFTNAGFNVVNIGV----LSPQELFIKAAIETKADAILVSSLYGQG 67 (137) T ss_dssp HHHHHHHHHTTCEEEEEEE----EECHHHHHHHHHHHTCSEEEEEECSSTH T ss_pred HHHHHHHHHCCCEEEECCC----CCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999978976772234----5699999999984398778875114411 No 17 >d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1) {Mycobacterium tuberculosis [TaxId: 1773]} Probab=25.11 E-value=19 Score=13.79 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=7.8 Q ss_pred CCCCEEEEEEECCCC Q ss_conf 874258998527888 Q T0585 89 HSLRGATVYTISDEA 103 (234) Q Consensus 89 ~~~~G~~v~~~~~~~ 103 (234) .+++||.+-+++..+ T Consensus 187 ~~vrGFatNVSNy~~ 201 (301) T d1uoza_ 187 GRARGFSLNVSNFYT 201 (301) T ss_dssp GGSSEEEECTTCCCC T ss_pred CCCCEEEEECCCCCC T ss_conf 651379983567854 No 18 >d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=24.39 E-value=20 Score=13.71 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=43.2 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 889999999999999569919998738887479899999998449978998603567 Q T0585 30 DVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTI 86 (234) Q Consensus 30 ~~~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSiH~ns~ 86 (234) +....+|..|...|.+.|+.+ ...-.+|...++..+.+.|...+.-+.|-|=-+.. T Consensus 25 ~e~~~~a~~l~~~L~~~gi~v-~~~~~D~~~~~lg~k~~~a~~~giP~~iiiG~~e~ 80 (127) T d1g5ha1 25 VELRQVCQGLLNELLENGISV-WPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTL 80 (127) T ss_dssp HHHHHHHHHHHHHHHHTTCCE-EEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 789999999999999842741-33341277768999999999709967999958755 No 19 >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=24.12 E-value=20 Score=13.68 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=31.7 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 9999999995699199987388874798999999984499789986 Q T0585 36 ARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISI 81 (234) Q Consensus 36 A~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSi 81 (234) +..|+.+|+..|+.++....-.|....+.+....+.+ ++|+.|+. T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~Dliitt 73 (155) T d2ftsa3 29 RSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGIS-RADVIITS 73 (155) T ss_dssp HHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHH-HCSEEEEE T ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC-CCCEEEEE T ss_conf 9999997334565517888844761477999998650-46779983 No 20 >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} Probab=21.88 E-value=15 Score=14.43 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=15.0 Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 9827877889975088884068889999999999999569 Q T0585 8 VLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGS 47 (234) Q Consensus 8 vIDpGHGG~D~Ga~g~~G~~E~~~~l~iA~~l~~~L~~~g 47 (234) +||-|=--.-||+. . +.+++.--++...++. |...+ T Consensus 42 iIDIGaeSTrPga~-~--is~~eE~~Rl~pvi~~-l~~~~ 77 (264) T d1ad1a_ 42 IIDVGGVSTRPGHE-M--ITVEEELNRVLPVVEA-IVGFD 77 (264) T ss_dssp EEEEESCCCSTTCC-C--CCHHHHHHHHHHHHHH-HTTSS T ss_pred EEEECCCCCCCCCC-C--CCHHHHHHHHHHHHHH-HCCCC T ss_conf 99978861799998-6--7989999764357665-30457 No 21 >d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]} Probab=20.68 E-value=23 Score=13.25 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHH-HCCCCEEEEEE Q ss_conf 9999999999569919998738887479899999998-44997899860 Q T0585 35 FARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQ-EFDADLFISIH 82 (234) Q Consensus 35 iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~-~~~adl~iSiH 82 (234) -...|...|+..|+.++....-.|..-.+.+....+. ...+|+.|.-= T Consensus 21 ngp~L~~~l~~~G~~v~~~~iv~D~~~~i~~~l~~~~~~~~~DlIvTtG 69 (155) T d1y5ea1 21 SGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNG 69 (155) T ss_dssp HHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEEC T ss_pred CHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 3999999998669888886664463999999999998566887899864 No 22 >d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=20.48 E-value=23 Score=13.22 Aligned_cols=51 Identities=6% Similarity=0.057 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 9999999999999569919998738887479899999998449978998603567 Q T0585 32 TLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTI 86 (234) Q Consensus 32 ~l~iA~~l~~~L~~~g~~vv~~tr~~D~~~sl~~R~~~A~~~~adl~iSiH~ns~ 86 (234) ....|..+...|.+.|+.+.+- +.+.++..+.+.|...++.+.|=|=-+-. T Consensus 19 ~~~~a~~i~~~Lr~~gi~v~~d----~~~~~l~~ki~~a~~~g~p~~iiiG~~E~ 69 (110) T d1qf6a1 19 QSEYVNELTQKLSNAGIRVKAD----LRNEKIGFKIREHTLRRVPYMLVCGDKEV 69 (110) T ss_dssp HHHHHHHHHHHHHTTTCCEEEE----CCSSCHHHHHHHHHHTTCSEEEEECTTTG T ss_pred HHHHHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 8888899999998853255444----77650007899999869989999775177 Done!