Query T0586 3NEU, Listeria innocua Clip11262, 125 residues Match_columns 125 No_of_seqs 117 out of 8289 Neff 8.0 Searched_HMMs 22458 Date Sun Jun 13 15:29:55 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0586.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0586.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3by6_A Predicted transcription 99.9 1.2E-23 5.2E-28 175.5 16.8 119 2-122 2-120 (126) 2 2ek5_A Predicted transcription 99.9 1.9E-23 8.6E-28 174.1 15.6 112 11-122 2-115 (129) 3 3ic7_A Putative transcriptiona 99.9 2.3E-25 1E-29 186.8 4.3 121 1-123 1-123 (126) 4 2wv0_A YVOA, HTH-type transcri 99.9 4.6E-22 2.1E-26 165.0 10.4 80 4-83 1-80 (243) 5 3edp_A LIN2111 protein; APC883 99.9 2.2E-21 9.6E-26 160.6 9.7 78 1-82 1-78 (236) 6 3eet_A Putative GNTR-family tr 99.9 2.5E-21 1.1E-25 160.2 9.6 71 10-80 26-96 (272) 7 3bwg_A Uncharacterized HTH-typ 99.8 1.4E-20 6.1E-25 155.4 8.3 72 10-81 2-73 (239) 8 2ra5_A Putative transcriptiona 99.8 1.7E-21 7.8E-26 161.2 1.0 80 3-82 4-85 (247) 9 1v4r_A Transcriptional repress 99.8 3E-19 1.3E-23 146.5 5.2 73 9-81 7-79 (102) 10 3c7j_A Transcriptional regulat 99.8 1.5E-17 6.7E-22 135.4 13.3 101 13-115 26-126 (237) 11 3dbw_A Transcriptional regulat 99.7 1.6E-17 7.1E-22 135.2 12.4 80 11-91 18-97 (226) 12 1hw1_A FADR, fatty acid metabo 99.7 7.3E-18 3.2E-22 137.4 9.9 71 10-80 4-74 (239) 13 3ihu_A Transcriptional regulat 99.7 6.2E-17 2.8E-21 131.3 14.1 90 11-102 14-103 (222) 14 2di3_A Bacterial regulatory pr 99.7 1.2E-17 5.4E-22 136.0 9.9 67 12-78 3-69 (239) 15 3f8m_A GNTR-family protein tra 99.7 5.9E-18 2.6E-22 138.1 7.7 70 10-81 10-79 (248) 16 2hs5_A Putative transcriptiona 99.7 5.9E-17 2.6E-21 131.5 12.1 80 11-91 26-105 (239) 17 1on2_A Transcriptional regulat 97.8 0.00024 1.1E-08 48.6 10.6 72 38-113 23-94 (142) 18 2h09_A Transcriptional regulat 97.6 0.00064 2.9E-08 45.7 10.5 93 17-115 36-128 (155) 19 3hrs_A Metalloregulator SCAR; 97.5 0.0011 4.7E-08 44.3 10.6 54 34-88 18-71 (214) 20 1fx7_A Iron-dependent represso 97.5 0.0011 5.1E-08 44.1 10.5 52 34-86 22-73 (230) 21 2qq9_A Diphtheria toxin repres 97.5 0.001 4.6E-08 44.4 10.2 50 38-87 25-74 (226) 22 1j5y_A Transcriptional regulat 97.2 0.00036 1.6E-08 47.4 4.9 45 35-80 35-79 (187) 23 1jhf_A LEXA repressor; LEXA SO 97.2 0.00096 4.3E-08 44.6 6.7 58 12-74 5-63 (202) 24 3k69_A Putative transcription 97.1 0.00067 3E-08 45.6 5.7 68 2-81 5-74 (162) 25 2kko_A Possible transcriptiona 97.1 0.0031 1.4E-07 41.3 9.1 77 4-83 1-85 (108) 26 1ku9_A Hypothetical protein MJ 97.0 0.0059 2.6E-07 39.4 9.7 48 35-83 40-91 (152) 27 1bia_A BIRA bifunctional prote 97.0 0.00096 4.3E-08 44.6 5.3 47 34-81 17-64 (321) 28 3cta_A Riboflavin kinase; stru 97.0 0.006 2.7E-07 39.4 9.2 65 19-84 10-75 (230) 29 1ft9_A Carbon monoxide oxidati 96.8 0.0038 1.7E-07 40.7 7.4 71 13-84 134-209 (222) 30 2v79_A DNA replication protein 96.8 0.0012 5.6E-08 43.8 4.7 41 33-73 47-87 (135) 31 2fbh_A Transcriptional regulat 96.7 0.018 8.1E-07 36.2 10.2 74 38-116 53-132 (146) 32 2vn2_A DNAD, chromosome replic 96.7 0.0014 6.1E-08 43.6 4.4 41 33-73 47-87 (128) 33 1ylf_A RRF2 family protein; st 96.6 0.0032 1.4E-07 41.1 5.9 48 32-80 26-74 (149) 34 3dkw_A DNR protein; CRP-FNR, H 96.6 0.0053 2.3E-07 39.7 6.9 64 13-79 152-219 (227) 35 3lwf_A LIN1550 protein, putati 96.6 0.0038 1.7E-07 40.7 5.8 59 22-81 30-90 (159) 36 3b73_A PHIH1 repressor-like pr 96.5 0.0076 3.4E-07 38.7 7.2 68 1-79 1-71 (111) 37 3ech_A MEXR, multidrug resista 96.5 0.05 2.2E-06 33.3 11.3 78 36-117 51-132 (142) 38 2d1h_A ST1889, 109AA long hypo 96.5 0.0069 3.1E-07 39.0 6.7 39 34-73 34-72 (109) 39 2fmy_A COOA, carbon monoxide o 96.5 0.0066 2.9E-07 39.1 6.6 67 13-79 138-209 (220) 40 2zcw_A TTHA1359, transcription 96.4 0.0066 2.9E-07 39.1 6.4 66 12-79 117-187 (202) 41 2nnn_A Probable transcriptiona 96.4 0.023 1E-06 35.6 9.1 76 39-117 54-133 (140) 42 3bro_A Transcriptional regulat 96.4 0.023 1E-06 35.5 9.0 81 32-116 46-130 (141) 43 3hsr_A HTH-type transcriptiona 96.4 0.04 1.8E-06 34.0 10.2 77 35-117 49-129 (140) 44 3deu_A Transcriptional regulat 96.4 0.037 1.7E-06 34.1 10.0 75 36-116 68-148 (166) 45 3fx3_A Cyclic nucleotide-bindi 96.4 0.0084 3.7E-07 38.4 6.6 64 11-79 151-218 (237) 46 2gau_A Transcriptional regulat 96.3 0.02 8.7E-07 36.0 8.3 68 12-80 151-222 (232) 47 3kcc_A Catabolite gene activat 96.3 0.013 5.6E-07 37.2 7.3 65 12-78 188-257 (260) 48 2zdb_A Transcriptional regulat 96.3 0.0058 2.6E-07 39.5 5.5 67 12-79 110-180 (195) 49 3e97_A Transcriptional regulat 96.3 0.017 7.7E-07 36.3 7.9 57 21-79 159-216 (231) 50 3cjn_A Transcriptional regulat 96.3 0.029 1.3E-06 34.9 8.9 72 37-114 67-144 (162) 51 3dv8_A Transcriptional regulat 96.3 0.01 4.6E-07 37.8 6.6 64 12-79 146-210 (220) 52 1k78_A Paired box protein PAX5 96.3 0.043 1.9E-06 33.7 9.8 62 7-76 26-87 (149) 53 1zyb_A Transcription regulator 96.2 0.0068 3E-07 39.0 5.6 66 10-80 160-228 (232) 54 3e6c_C CPRK, cyclic nucleotide 96.2 0.0093 4.1E-07 38.1 6.3 66 12-79 147-218 (250) 55 3bpv_A Transcriptional regulat 96.2 0.018 8.2E-07 36.2 7.7 35 39-73 45-79 (138) 56 3iwz_A CAP-like, catabolite ac 96.2 0.0087 3.9E-07 38.3 5.9 66 12-78 158-227 (230) 57 1jgs_A Multiple antibiotic res 96.2 0.044 2E-06 33.7 9.4 46 38-83 49-98 (138) 58 2eth_A Transcriptional regulat 96.1 0.076 3.4E-06 32.1 10.5 77 38-117 59-139 (154) 59 3g3z_A NMB1585, transcriptiona 96.1 0.039 1.7E-06 34.0 8.8 37 38-74 46-82 (145) 60 1xd7_A YWNA; structural genomi 96.0 0.0092 4.1E-07 38.1 5.4 46 34-80 21-67 (145) 61 2oz6_A Virulence factor regula 96.0 0.018 8.2E-07 36.2 6.8 65 13-79 136-205 (207) 62 1sfx_A Conserved hypothetical 96.0 0.045 2E-06 33.6 8.7 34 37-71 35-68 (109) 63 2qww_A Transcriptional regulat 95.9 0.051 2.3E-06 33.2 8.9 46 37-83 56-107 (154) 64 3bj6_A Transcriptional regulat 95.9 0.09 4E-06 31.6 10.0 75 38-115 55-133 (152) 65 3f3x_A Transcriptional regulat 95.9 0.077 3.4E-06 32.1 9.7 36 39-74 52-87 (144) 66 2fa5_A Transcriptional regulat 95.9 0.017 7.8E-07 36.3 6.3 37 37-74 64-100 (162) 67 1s3j_A YUSO protein; structura 95.9 0.053 2.3E-06 33.2 8.8 76 36-115 51-130 (155) 68 2gxg_A 146AA long hypothetical 95.9 0.085 3.8E-06 31.8 9.8 77 36-116 50-130 (146) 69 3f6v_A Possible transcriptiona 95.9 0.015 6.5E-07 36.8 5.8 61 12-76 49-109 (151) 70 2hr3_A Probable transcriptiona 95.9 0.095 4.2E-06 31.5 9.9 48 34-82 48-99 (147) 71 1ub9_A Hypothetical protein PH 95.8 0.022 9.7E-07 35.7 6.6 46 37-83 31-80 (100) 72 2nyx_A Probable transcriptiona 95.8 0.079 3.5E-06 32.0 9.3 45 37-82 60-108 (168) 73 2a61_A Transcriptional regulat 95.7 0.039 1.7E-06 34.0 7.5 45 38-82 48-96 (145) 74 3k0l_A Repressor protein; heli 95.7 0.053 2.4E-06 33.1 8.1 75 36-114 60-138 (162) 75 3boq_A Transcriptional regulat 95.6 0.031 1.4E-06 34.7 6.6 80 33-116 59-142 (160) 76 1lj9_A Transcriptional regulat 95.6 0.097 4.3E-06 31.4 9.1 75 37-115 44-122 (144) 77 3bja_A Transcriptional regulat 95.5 0.061 2.7E-06 32.7 7.9 77 38-117 48-128 (139) 78 3bdd_A Regulatory protein MARR 95.5 0.03 1.3E-06 34.8 6.3 46 38-83 46-95 (142) 79 3cdh_A Transcriptional regulat 95.5 0.088 3.9E-06 31.7 8.6 73 1-74 1-94 (155) 80 2frh_A SARA, staphylococcal ac 95.4 0.043 1.9E-06 33.8 6.9 50 32-82 49-102 (127) 81 2k27_A Paired box protein PAX- 95.3 0.062 2.8E-06 32.7 7.2 61 8-76 20-80 (159) 82 2rdp_A Putative transcriptiona 95.2 0.12 5.4E-06 30.8 8.6 75 38-115 57-135 (150) 83 3e6m_A MARR family transcripti 95.2 0.05 2.2E-06 33.3 6.6 75 36-114 67-145 (161) 84 2fbi_A Probable transcriptiona 95.2 0.067 3E-06 32.5 7.2 45 38-82 51-99 (142) 85 2e1c_A Putative HTH-type trans 95.1 0.008 3.6E-07 38.5 2.4 36 34-70 39-74 (171) 86 3cuo_A Uncharacterized HTH-typ 95.1 0.061 2.7E-06 32.8 6.8 54 19-75 22-75 (99) 87 2pjp_A Selenocysteine-specific 95.1 0.084 3.7E-06 31.8 7.5 86 34-119 17-103 (121) 88 3eco_A MEPR; mutlidrug efflux 95.1 0.21 9.3E-06 29.2 9.6 77 37-117 48-128 (139) 89 3jth_A Transcription activator 95.1 0.054 2.4E-06 33.1 6.5 57 15-75 17-73 (98) 90 3jw4_A Transcriptional regulat 95.0 0.073 3.3E-06 32.2 7.0 78 36-117 57-138 (148) 91 3i4p_A Transcriptional regulat 95.0 0.019 8.3E-07 36.1 3.9 39 30-69 11-49 (162) 92 1stz_A Heat-inducible transcri 95.0 0.016 7E-07 36.6 3.5 58 21-79 21-80 (338) 93 3fm5_A Transcriptional regulat 94.9 0.16 7.3E-06 29.9 8.6 38 35-73 53-90 (150) 94 3d0s_A Transcriptional regulat 94.9 0.034 1.5E-06 34.4 5.1 68 12-81 147-220 (227) 95 2bv6_A MGRA, HTH-type transcri 94.9 0.11 4.8E-06 31.1 7.5 74 39-117 53-130 (142) 96 2fbk_A Transcriptional regulat 94.8 0.018 8.1E-07 36.2 3.4 38 35-73 85-122 (181) 97 2oqg_A Possible transcriptiona 94.8 0.12 5.3E-06 30.8 7.6 37 39-76 36-72 (114) 98 1r1t_A Transcriptional repress 94.8 0.13 5.7E-06 30.6 7.7 52 22-77 47-98 (122) 99 1lva_A Selenocysteine-specific 94.7 0.17 7.6E-06 29.8 8.3 102 12-119 136-239 (258) 100 2o0m_A Transcriptional regulat 94.7 0.0041 1.8E-07 40.4 0.0 57 25-84 24-80 (345) 101 1pdn_C Protein (PRD paired); p 94.5 0.058 2.6E-06 32.9 5.4 65 4-76 8-72 (128) 102 2bgc_A PRFA; bacterial infecti 94.4 0.14 6.4E-06 30.3 7.3 46 38-85 170-216 (238) 103 2ia0_A Putative HTH-type trans 94.4 0.025 1.1E-06 35.3 3.4 40 30-70 25-64 (171) 104 2cfx_A HTH-type transcriptiona 94.4 0.025 1.1E-06 35.3 3.3 37 32-69 15-51 (144) 105 2g9w_A Conserved hypothetical 94.3 0.062 2.8E-06 32.7 5.2 55 23-78 11-69 (138) 106 1p4x_A Staphylococcal accessor 94.1 0.12 5.5E-06 30.8 6.5 49 33-82 47-99 (250) 107 2pn6_A ST1022, 150AA long hypo 94.1 0.037 1.6E-06 34.2 3.8 40 30-70 11-50 (150) 108 2pex_A Transcriptional regulat 94.1 0.051 2.3E-06 33.3 4.5 37 37-74 62-98 (153) 109 1y0u_A Arsenical resistance op 94.1 0.065 2.9E-06 32.5 5.0 44 38-82 44-87 (96) 110 3e3m_A Transcriptional regulat 94.1 0.0071 3.1E-07 38.9 0.0 33 26-59 2-34 (355) 111 1mkm_A ICLR transcriptional re 93.9 0.4 1.8E-05 27.4 9.8 44 35-79 22-65 (249) 112 2fxa_A Protease production reg 93.9 0.11 4.8E-06 31.1 5.8 38 36-74 62-99 (207) 113 1okr_A MECI, methicillin resis 93.8 0.27 1.2E-05 28.5 7.8 91 21-117 14-117 (123) 114 2w48_A Sorbitol operon regulat 93.7 0.081 3.6E-06 31.9 4.9 39 34-73 19-57 (315) 115 2p5v_A Transcriptional regulat 93.7 0.043 1.9E-06 33.8 3.4 35 34-69 22-56 (162) 116 2cyy_A Putative HTH-type trans 93.6 0.026 1.1E-06 35.2 2.1 36 34-70 19-54 (151) 117 1z91_A Organic hydroperoxide r 93.4 0.05 2.2E-06 33.3 3.5 44 36-80 54-101 (147) 118 2p8t_A Hypothetical protein PH 93.4 0.15 6.6E-06 30.2 5.9 56 20-82 19-74 (200) 119 2w25_A Probable transcriptiona 93.4 0.047 2.1E-06 33.5 3.3 36 33-69 18-53 (150) 120 1qbj_A Protein (double-strande 93.4 0.26 1.2E-05 28.6 7.1 59 18-79 11-71 (81) 121 2p4w_A Transcriptional regulat 93.4 0.077 3.4E-06 32.1 4.4 48 21-71 15-62 (202) 122 1p4x_A Staphylococcal accessor 93.4 0.16 7.3E-06 29.9 6.0 51 32-83 170-224 (250) 123 1uly_A Hypothetical protein PH 93.3 0.096 4.3E-06 31.5 4.7 52 17-71 16-67 (192) 124 2o0y_A Transcriptional regulat 93.3 0.25 1.1E-05 28.7 6.8 45 34-79 36-80 (260) 125 1r1u_A CZRA, repressor protein 93.3 0.086 3.8E-06 31.8 4.4 38 39-77 41-78 (106) 126 2ia2_A Putative transcriptiona 93.2 0.14 6.2E-06 30.4 5.4 47 33-81 33-79 (265) 127 1u2w_A CADC repressor, cadmium 93.2 0.067 3E-06 32.5 3.7 57 17-76 38-94 (122) 128 2b0l_A GTP-sensing transcripti 93.1 0.23 1E-05 29.0 6.4 58 27-84 33-92 (102) 129 2dbb_A Putative HTH-type trans 93.0 0.05 2.2E-06 33.3 2.9 36 33-69 20-55 (151) 130 3h5t_A Transcriptional regulat 93.0 0.053 2.4E-06 33.1 3.0 28 32-59 4-31 (366) 131 2cg4_A Regulatory protein ASNC 92.9 0.086 3.8E-06 31.8 4.0 34 34-68 20-53 (152) 132 3f6o_A Probable transcriptiona 92.9 0.17 7.4E-06 29.9 5.4 38 37-76 32-69 (118) 133 1sd4_A Penicillinase repressor 92.7 0.6 2.7E-05 26.2 9.6 91 20-116 13-116 (126) 134 1i1g_A Transcriptional regulat 92.4 0.1 4.5E-06 31.3 3.8 35 34-69 16-50 (141) 135 2jsc_A Transcriptional regulat 92.4 0.056 2.5E-06 33.0 2.5 36 39-75 36-71 (118) 136 1o5l_A Transcriptional regulat 92.3 0.019 8.4E-07 36.1 0.0 61 13-77 142-203 (213) 137 3kfw_X Uncharacterized protein 91.9 0.15 6.7E-06 30.2 4.2 47 32-79 16-64 (247) 138 3l09_A Putative transcriptiona 91.7 0.16 7E-06 30.0 4.1 48 32-79 38-90 (266) 139 3df8_A Possible HXLR family tr 91.4 0.61 2.7E-05 26.2 6.9 57 34-90 39-98 (111) 140 2v7f_A RPS19, RPS19E SSU ribos 91.2 0.37 1.7E-05 27.6 5.6 63 15-84 52-128 (150) 141 1qgp_A Protein (double strande 91.1 0.45 2E-05 27.0 5.9 44 30-74 25-68 (77) 142 2qc0_A Uncharacterized protein 90.8 0.16 6.9E-06 30.1 3.4 34 38-71 312-345 (373) 143 2z99_A Putative uncharacterize 90.4 1 4.6E-05 24.6 9.0 104 4-113 3-120 (219) 144 1z6r_A MLC protein; transcript 90.1 0.17 7.4E-06 29.9 3.0 34 35-69 29-62 (406) 145 1z05_A Transcriptional regulat 89.6 0.15 6.7E-06 30.2 2.5 35 34-69 51-85 (429) 146 2hoe_A N-acetylglucosamine kin 89.2 0.35 1.5E-05 27.8 4.1 42 22-70 25-66 (380) 147 3kjx_A Transcriptional regulat 88.7 0.2 9E-06 29.3 2.6 26 34-59 7-32 (344) 148 2obp_A Putative DNA-binding pr 88.4 1.3 5.8E-05 24.0 6.6 56 17-73 17-72 (96) 149 2g7u_A Transcriptional regulat 88.4 1.5 6.6E-05 23.7 10.4 45 34-80 27-71 (257) 150 2heo_A Z-DNA binding protein 1 88.1 1.3 5.8E-05 24.0 6.4 52 15-76 12-63 (67) 151 2hzt_A Putative HTH-type trans 87.9 1.2 5.3E-05 24.3 6.1 52 39-90 29-87 (107) 152 3lmm_A Uncharacterized protein 87.9 0.34 1.5E-05 27.9 3.3 41 33-74 441-481 (583) 153 3hh0_A Transcriptional regulat 87.6 1.6 7.3E-05 23.3 8.6 39 37-79 4-44 (146) 154 2qlz_A Transcription factor PF 87.4 0.1 4.5E-06 31.3 0.4 54 14-70 5-58 (232) 155 2o3f_A Putative HTH-type trans 87.4 0.31 1.4E-05 28.1 2.9 64 1-70 1-72 (111) 156 2k4b_A Transcriptional regulat 87.4 0.42 1.9E-05 27.2 3.5 40 37-77 50-93 (99) 157 2ve8_A FTSK, DNA translocase F 87.0 1.8 7.8E-05 23.1 6.7 59 8-76 5-63 (73) 158 3bil_A Probable LACI-family tr 87.0 0.092 4.1E-06 31.6 0.0 27 34-60 4-31 (348) 159 3ctp_A Periplasmic binding pro 86.8 0.096 4.3E-06 31.5 0.0 24 37-60 2-25 (330) 160 2zkz_A Transcriptional repress 86.4 1.8 8E-05 23.1 6.3 40 35-77 40-79 (99) 161 1p6r_A Penicillinase repressor 86.3 0.77 3.4E-05 25.5 4.4 52 20-77 12-67 (82) 162 3lmm_A Uncharacterized protein 86.2 0.11 4.8E-06 31.1 0.0 43 30-74 524-566 (583) 163 3gp4_A Transcriptional regulat 86.0 2 8.8E-05 22.8 8.1 38 39-80 4-43 (142) 164 1qpz_A PURA, protein (purine n 85.6 0.51 2.3E-05 26.7 3.2 21 39-59 2-22 (340) 165 3hhh_A Transcriptional regulat 85.3 1 4.5E-05 24.8 4.6 24 47-70 42-65 (116) 166 2fsw_A PG_0823 protein; alpha- 85.3 1.1 4.8E-05 24.6 4.7 70 1-74 1-76 (107) 167 2f2e_A PA1607; transcription f 84.1 1.7 7.6E-05 23.2 5.3 42 22-70 29-70 (146) 168 2hsg_A Glucose-resistance amyl 83.8 0.56 2.5E-05 26.4 2.7 21 39-59 4-24 (332) 169 1uxc_A FRUR (1-57), fructose r 83.7 0.7 3.1E-05 25.8 3.2 21 39-59 2-22 (65) 170 1z7u_A Hypothetical protein EF 83.5 1.8 7.9E-05 23.1 5.2 82 1-89 1-94 (112) 171 3dbi_A Sugar-binding transcrip 83.3 0.17 7.7E-06 29.8 0.0 25 36-60 2-26 (338) 172 3jyv_T S19E protein; eukaryoti 83.0 0.55 2.5E-05 26.4 2.5 63 14-83 51-127 (141) 173 2vt3_A REX, redox-sensing tran 83.0 1 4.4E-05 24.8 3.8 55 13-79 17-71 (215) 174 1r7j_A Conserved hypothetical 82.6 2.8 0.00012 21.8 9.1 67 17-92 8-74 (95) 175 2r0q_C Putative transposon TN5 82.1 2.9 0.00013 21.7 5.9 27 39-68 177-203 (209) 176 2v9v_A Selenocysteine-specific 82.0 2.9 0.00013 21.7 6.6 43 36-79 17-61 (135) 177 2gqq_A Leucine-responsive regu 81.7 0.043 1.9E-06 33.7 -3.6 35 34-69 25-59 (163) 178 2vxz_A Pyrsv_GP04; viral prote 81.4 3.1 0.00014 21.6 8.2 100 16-120 7-107 (165) 179 3gpv_A Transcriptional regulat 81.4 3.1 0.00014 21.6 9.1 40 37-80 16-57 (148) 180 1r8d_A Transcription activator 81.3 3.1 0.00014 21.5 8.7 38 39-80 4-43 (109) 181 2kfs_A Conserved hypothetical 81.3 1.4 6.1E-05 23.9 4.0 44 31-77 25-68 (148) 182 2zhg_A Redox-sensitive transcr 81.1 3.1 0.00014 21.5 7.8 48 29-80 3-51 (154) 183 1yyv_A Putative transcriptiona 80.8 2.5 0.00011 22.1 5.2 56 32-89 45-107 (131) 184 1u78_A TC3 transposase, transp 80.5 1.9 8.5E-05 22.9 4.5 35 37-75 23-57 (141) 185 3jvd_A Transcriptional regulat 79.5 0.29 1.3E-05 28.3 0.0 25 35-59 4-28 (333) 186 1mzb_A Ferric uptake regulatio 79.5 1.8 7.9E-05 23.1 4.0 37 35-71 32-73 (136) 187 2w57_A Ferric uptake regulatio 79.0 1.6 7.3E-05 23.4 3.7 39 34-73 31-74 (150) 188 1g2h_A Transcriptional regulat 78.5 1.2 5.5E-05 24.1 3.0 24 36-59 32-55 (61) 189 1jko_C HIN recombinase, DNA-in 78.3 0.8 3.6E-05 25.4 2.0 31 20-58 12-42 (52) 190 2fe3_A Peroxide operon regulat 78.0 1.8 8.1E-05 23.0 3.7 39 34-73 35-78 (145) 191 1q1h_A TFE, transcription fact 77.9 1.7 7.4E-05 23.3 3.5 39 33-72 30-68 (110) 192 3go5_A Multidomain protein wit 77.9 3.9 0.00018 20.8 6.3 60 13-76 224-283 (285) 193 2o03_A Probable zinc uptake re 77.0 1.1 5E-05 24.4 2.4 37 34-71 24-65 (131) 194 3h5o_A Transcriptional regulat 76.9 0.38 1.7E-05 27.5 0.0 21 39-59 6-26 (339) 195 1jye_A Lactose operon represso 76.9 0.38 1.7E-05 27.5 0.0 23 38-60 4-26 (349) 196 3bdn_A Lambda repressor; repre 76.8 3.4 0.00015 21.2 4.9 43 12-57 8-50 (236) 197 1gdt_A GD resolvase, protein ( 76.6 1.7 7.5E-05 23.3 3.3 53 11-74 44-96 (183) 198 1sfu_A 34L protein; protein/Z- 76.0 4.4 0.0002 20.5 7.3 54 17-73 12-65 (75) 199 1rr7_A Middle operon regulator 75.7 3.3 0.00015 21.3 4.5 48 13-64 72-119 (129) 200 3cuq_B Vacuolar protein-sortin 75.5 4.5 0.0002 20.5 5.2 70 8-78 67-145 (218) 201 2fu4_A Ferric uptake regulatio 75.0 2.7 0.00012 21.9 3.9 35 37-71 33-72 (83) 202 1rp3_A RNA polymerase sigma fa 74.6 3.1 0.00014 21.5 4.2 30 35-64 113-142 (239) 203 1t6s_A Conserved hypothetical 74.6 4.8 0.00021 20.3 9.7 94 17-115 7-116 (162) 204 3he0_A Transcriptional regulat 73.9 3.8 0.00017 20.9 4.5 49 1-55 1-49 (196) 205 1u5t_B Defective in vacuolar p 73.8 5 0.00022 20.1 6.0 73 6-79 4-93 (169) 206 3mky_B Protein SOPB; partition 73.2 3 0.00013 21.6 3.8 41 15-62 27-67 (189) 207 3fxq_A LYSR type regulator of 73.2 5.2 0.00023 20.1 7.3 53 38-91 17-72 (305) 208 3iwf_A Transcription regulator 73.1 1.6 7E-05 23.5 2.4 53 12-70 16-68 (107) 209 3maj_A DNA processing chain A; 72.8 5.2 0.00023 20.1 4.9 40 35-75 340-379 (382) 210 1q06_A Transcriptional regulat 72.7 5.3 0.00024 20.0 9.2 37 39-79 2-40 (135) 211 2o20_A Catabolite control prot 72.3 0.58 2.6E-05 26.3 0.0 22 38-59 6-27 (332) 212 1jhg_A Trp operon repressor; c 71.1 4 0.00018 20.8 4.0 26 39-64 60-85 (101) 213 3eyy_A Putative iron uptake re 71.0 4.5 0.0002 20.5 4.3 35 38-72 34-73 (145) 214 3mkl_A HTH-type transcriptiona 68.7 6.5 0.00029 19.4 5.7 38 19-60 9-46 (120) 215 1oyi_A Double-stranded RNA-bin 68.6 3.5 0.00016 21.1 3.3 40 39-78 32-73 (82) 216 2pi2_A Replication protein A 3 67.6 0.85 3.8E-05 25.2 0.0 53 12-71 206-259 (270) 217 2p7v_B Sigma-70, RNA polymeras 67.5 5.8 0.00026 19.7 4.3 31 32-63 21-55 (68) 218 2fjr_A Repressor protein CI; g 67.2 4.1 0.00018 20.7 3.4 35 16-59 8-42 (189) 219 2jn6_A Protein CGL2762, transp 66.7 3.5 0.00016 21.2 3.0 27 39-65 25-51 (97) 220 3frw_A Putative Trp repressor 66.5 5.3 0.00024 20.0 3.9 25 39-63 60-84 (107) 221 3ez2_A Plasmid partition prote 65.4 3.4 0.00015 21.3 2.7 57 17-73 16-76 (398) 222 1r8e_A Multidrug-efflux transp 65.2 7.6 0.00034 19.0 6.7 41 35-79 3-46 (278) 223 1ixc_A CBNR, LYSR-type regulat 65.0 7.7 0.00034 18.9 5.9 55 38-92 16-72 (294) 224 2fna_A Conserved hypothetical 64.9 7 0.00031 19.2 4.2 40 39-79 310-349 (357) 225 3cuq_A Vacuolar-sorting protei 64.9 6.1 0.00027 19.6 4.0 66 15-81 73-149 (234) 226 2ijl_A AGR_C_4647P, molybdenum 64.6 7.8 0.00035 18.9 7.7 53 38-90 39-98 (135) 227 2fq3_A Transcription regulator 64.6 7.8 0.00035 18.9 4.5 52 17-69 47-99 (104) 228 2elh_A CG11849-PA, LD40883P; s 64.5 6.2 0.00027 19.6 3.9 54 2-63 6-64 (87) 229 2ef8_A C.ECOT38IS, putative tr 64.4 7.8 0.00035 18.9 4.8 39 12-57 5-43 (84) 230 1l9z_H Sigma factor SIGA; heli 64.2 7.4 0.00033 19.0 4.3 34 34-67 297-330 (438) 231 2vz4_A Tipal, HTH-type transcr 63.6 8.1 0.00036 18.8 7.8 37 39-79 3-41 (108) 232 3f6w_A XRE-family like protein 63.4 7 0.00031 19.2 4.0 39 12-57 9-47 (83) 233 1ku3_A Sigma factor SIGA; heli 63.3 7.7 0.00034 18.9 4.2 30 33-63 27-60 (73) 234 3gwz_A MMCR; methyltransferase 63.3 8.2 0.00037 18.7 4.5 46 31-78 67-112 (369) 235 2htj_A P fimbrial regulatory p 63.2 8.3 0.00037 18.7 4.4 36 39-74 16-52 (81) 236 1c9b_A General transcription f 62.3 7.6 0.00034 19.0 4.1 30 34-64 63-92 (207) 237 1zx4_A P1 PARB, plasmid partit 62.0 8.7 0.00039 18.6 6.1 44 11-63 7-50 (192) 238 3fzv_A Probable transcriptiona 61.7 8.2 0.00036 18.8 4.1 46 39-84 20-68 (306) 239 1ais_B TFB TFIIB, protein (tra 61.6 8.8 0.00039 18.5 4.3 30 34-64 67-96 (200) 240 2nrk_A Hypothetical protein GR 61.2 4.9 0.00022 20.2 2.9 78 1-78 1-94 (173) 241 1u3e_M HNH homing endonuclease 60.9 6.2 0.00028 19.5 3.4 25 36-60 134-158 (174) 242 3hhg_A Transcriptional regulat 60.9 9.1 0.0004 18.5 7.3 49 38-87 18-69 (306) 243 2esn_A Probable transcriptiona 60.9 9.1 0.0004 18.5 6.7 52 39-90 26-79 (310) 244 3dp7_A SAM-dependent methyltra 60.6 7.3 0.00033 19.1 3.7 56 21-78 31-90 (363) 245 1xsv_A Hypothetical UPF0122 pr 60.0 6.4 0.00028 19.5 3.3 23 37-60 42-64 (113) 246 3eus_A DNA-binding protein; st 59.8 9.4 0.00042 18.3 5.0 41 10-57 7-47 (86) 247 2k9s_A Arabinose operon regula 59.8 9.5 0.00042 18.3 4.4 41 20-63 6-46 (107) 248 1z4h_A TORI, TOR inhibition pr 59.6 9.3 0.00041 18.4 4.1 31 29-60 3-33 (66) 249 3ez9_A Para; DNA binding, wing 59.1 1.8 8.1E-05 23.0 0.4 36 36-71 42-77 (403) 250 3mn2_A Probable ARAC family tr 59.0 9.8 0.00043 18.2 5.0 40 16-63 5-44 (108) 251 2dt5_A AT-rich DNA-binding pro 58.6 9.5 0.00042 18.3 4.0 55 12-78 11-65 (211) 252 3col_A Putative transcription 58.4 5.3 0.00024 20.0 2.7 49 1-56 1-49 (196) 253 1tty_A Sigma-A, RNA polymerase 58.2 7.9 0.00035 18.9 3.5 31 32-63 34-68 (87) 254 1s7o_A Hypothetical UPF0122 pr 58.1 7.5 0.00033 19.0 3.4 23 37-60 39-61 (113) 255 1xmk_A Double-stranded RNA-spe 57.3 10 0.00046 18.1 4.0 35 39-73 27-62 (79) 256 2jml_A DNA binding domain/tran 57.0 11 0.00047 18.0 5.3 69 37-119 5-76 (81) 257 2guz_A Mitochondrial import in 56.9 8.4 0.00037 18.7 3.5 36 29-65 1-43 (71) 258 3fmy_A HTH-type transcriptiona 56.4 4.7 0.00021 20.3 2.1 21 36-57 24-44 (73) 259 2kpj_A SOS-response transcript 56.1 11 0.00048 17.9 5.0 35 18-59 10-44 (94) 260 2a6h_F RNA polymerase sigma fa 56.1 6.7 0.0003 19.3 2.9 36 35-70 283-318 (423) 261 2ao9_A Phage protein; structur 55.6 6.6 0.00029 19.4 2.8 23 33-56 45-67 (155) 262 1b9m_A Protein (mode); DNA-bin 55.5 11 0.0005 17.9 6.9 46 39-84 36-88 (265) 263 3elk_A Putative transcriptiona 54.2 8.3 0.00037 18.7 3.1 23 48-70 44-66 (117) 264 3lsg_A Two-component response 53.8 12 0.00053 17.7 5.0 29 36-65 19-47 (103) 265 1u5t_A Appears to BE functiona 53.5 12 0.00053 17.7 3.8 65 14-79 91-160 (233) 266 1tlh_B Sigma-70, RNA polymeras 53.4 4.5 0.0002 20.4 1.7 31 31-62 33-67 (81) 267 2a6c_A Helix-turn-helix motif; 53.2 12 0.00054 17.6 5.1 38 15-59 16-53 (83) 268 2ict_A Antitoxin HIGA; helix-t 53.2 9.4 0.00042 18.4 3.3 22 37-59 22-43 (94) 269 1qzz_A RDMB, aclacinomycin-10- 52.3 12 0.00056 17.5 4.4 35 39-73 51-85 (374) 270 1j9i_A GPNU1 DBD;, terminase s 52.2 6.7 0.0003 19.3 2.4 33 39-75 4-37 (68) 271 2jpc_A SSRB; DNA binding prote 51.6 11 0.00048 17.9 3.4 25 39-63 15-39 (61) 272 1ntc_A Protein (nitrogen regul 51.6 9 0.0004 18.5 3.0 23 40-62 67-89 (91) 273 2yu3_A DNA-directed RNA polyme 51.0 13 0.00058 17.4 5.7 49 16-72 40-88 (95) 274 2auw_A Hypothetical protein NE 50.5 8.5 0.00038 18.6 2.7 23 34-57 101-123 (170) 275 2o8x_A Probable RNA polymerase 50.2 12 0.00052 17.7 3.4 24 36-60 31-54 (70) 276 2dk5_A DNA-directed RNA polyme 49.9 14 0.00061 17.3 6.5 50 16-73 23-72 (91) 277 3f8l_A GNTR-family protein tra 49.2 2.7 0.00012 21.9 0.0 29 53-81 2-31 (201) 278 2rn7_A IS629 ORFA; helix, all 49.1 11 0.00051 17.8 3.2 28 39-66 32-59 (108) 279 3c57_A Two component transcrip 48.6 14 0.00062 17.2 3.6 36 21-64 34-69 (95) 280 2ppx_A AGR_C_3184P, uncharacte 48.5 9.8 0.00043 18.2 2.7 22 35-57 42-63 (99) 281 1wi9_A Protein C20ORF116 homol 48.2 10 0.00046 18.1 2.8 46 35-80 19-67 (72) 282 2jvl_A TRMBF1; coactivator, he 48.1 5.2 0.00023 20.0 1.3 36 21-57 34-69 (107) 283 1yg2_A Gene activator APHA; vi 48.0 13 0.0006 17.3 3.4 25 46-70 32-56 (179) 284 3ccy_A Putative TETR-family tr 47.8 15 0.00065 17.1 4.4 51 1-55 1-52 (203) 285 1u8b_A ADA polyprotein; protei 47.3 15 0.00066 17.0 6.8 47 13-62 72-118 (133) 286 1d5y_A ROB transcription facto 47.1 15 0.00067 17.0 4.9 44 17-64 3-46 (292) 287 1lmb_3 Protein (lambda repress 46.5 8 0.00036 18.8 2.0 42 13-57 9-50 (92) 288 2zfw_A PEX; five alpha-helices 46.2 11 0.00048 18.0 2.6 51 17-70 43-97 (148) 289 2ip2_A Probable phenazine-spec 46.1 15 0.00069 16.9 5.4 38 39-77 43-80 (334) 290 1fse_A GERE; helix-turn-helix 46.1 16 0.00069 16.9 3.9 36 20-63 17-52 (74) 291 2b5a_A C.BCLI; helix-turn-heli 46.1 16 0.00069 16.9 5.2 37 14-57 7-43 (77) 292 2eby_A Putative HTH-type trans 45.9 11 0.00049 17.9 2.7 23 36-59 24-46 (113) 293 3h0d_A CTSR; protein DNA compl 45.9 16 0.0007 16.9 5.8 63 14-78 3-68 (155) 294 3cec_A Putative antidote prote 45.5 11 0.0005 17.8 2.7 22 37-59 32-53 (104) 295 3hug_A RNA polymerase sigma fa 45.3 16 0.0007 16.9 3.4 24 36-60 53-76 (92) 296 3ljl_A Transcriptional regulat 45.1 8.4 0.00037 18.7 2.0 53 1-57 1-54 (156) 297 3dte_A IRRE protein; radiotole 44.0 16 0.00071 16.9 3.3 31 40-70 164-194 (301) 298 3hef_A Gene 1 protein; bacteri 44.0 15 0.00066 17.0 3.1 46 4-57 4-52 (143) 299 1r71_A Transcriptional repress 44.0 17 0.00074 16.7 4.3 37 18-62 41-77 (178) 300 1x19_A CRTF-related protein; m 43.9 17 0.00074 16.7 5.3 39 36-77 64-102 (359) 301 2krf_A Transcriptional regulat 42.7 17 0.00078 16.6 3.9 35 21-63 19-53 (73) 302 1b0n_A Protein (SINR protein); 42.6 14 0.00061 17.3 2.7 18 39-56 16-33 (111) 303 3g5g_A Regulatory protein; tra 42.1 18 0.00079 16.5 5.0 77 12-125 23-99 (99) 304 1vz0_A PARB, chromosome partit 42.1 14 0.00064 17.2 2.8 23 39-61 136-158 (230) 305 1y7y_A C.AHDI; helix-turn-heli 41.7 18 0.0008 16.5 5.1 37 15-58 11-47 (74) 306 2esh_A Conserved hypothetical 41.5 18 0.00081 16.5 4.9 23 48-70 46-68 (118) 307 2wiu_B HTH-type transcriptiona 41.5 15 0.00065 17.1 2.7 35 17-58 12-46 (88) 308 1vi0_A Transcriptional regulat 41.0 19 0.00083 16.4 4.1 44 9-56 4-47 (206) 309 1neq_A DNA-binding protein NER 40.9 11 0.00049 17.9 2.0 21 39-59 24-44 (74) 310 1p4w_A RCSB; solution structur 40.8 19 0.00083 16.4 3.9 25 39-63 51-75 (99) 311 3gn5_A HTH-type transcriptiona 40.4 12 0.00053 17.7 2.1 21 36-57 84-104 (133) 312 1adr_A P22 C2 repressor; trans 40.4 15 0.00068 17.0 2.7 33 18-57 6-38 (76) 313 3b7h_A Prophage LP1 protein 11 40.3 19 0.00085 16.3 5.1 35 17-58 7-41 (78) 314 1je8_A Nitrate/nitrite respons 40.1 19 0.00085 16.3 3.9 25 39-63 38-62 (82) 315 2r3s_A Uncharacterized protein 40.1 19 0.00085 16.3 4.9 39 39-78 41-79 (335) 316 3f8b_A Transcriptional regulat 40.0 19 0.00085 16.3 6.0 24 47-70 43-66 (116) 317 1tw3_A COMT, carminomycin 4-O- 40.0 19 0.00085 16.3 4.9 39 39-78 54-92 (360) 318 1iuy_A Cullin-3 homologue; win 40.0 16 0.00072 16.8 2.8 36 42-77 53-89 (92) 319 1x3u_A Transcriptional regulat 40.0 19 0.00086 16.3 3.7 25 39-63 33-57 (79) 320 3gbg_A TCP pilus virulence reg 39.8 19 0.00086 16.3 6.9 43 10-60 166-208 (276) 321 1rzs_A Antirepressor, regulato 39.3 17 0.00074 16.7 2.8 19 38-56 11-29 (61) 322 3cdl_A Transcriptional regulat 39.2 15 0.00066 17.0 2.5 49 1-57 1-49 (203) 323 1xma_A Predicted transcription 38.6 20 0.0009 16.2 5.4 24 47-70 72-95 (145) 324 1hsj_A Fusion protein consisti 38.5 20 0.0009 16.2 4.6 55 35-90 419-480 (487) 325 2rkh_A Putative APHA-like tran 38.2 7.6 0.00034 19.0 0.9 31 40-70 37-67 (180) 326 3bs3_A Putative DNA-binding pr 38.2 18 0.00079 16.6 2.7 44 1-58 1-44 (76) 327 2rnj_A Response regulator prot 38.1 20 0.00091 16.1 3.4 35 21-63 36-70 (91) 328 3mlf_A Transcriptional regulat 37.6 18 0.00079 16.5 2.7 20 36-56 36-55 (111) 329 2e1n_A PEX, period extender; c 37.5 21 0.00093 16.1 5.1 48 20-70 37-87 (138) 330 2r1j_L Repressor protein C2; p 36.9 19 0.00082 16.4 2.7 21 36-57 18-38 (68) 331 1zug_A Phage 434 CRO protein; 36.9 21 0.00095 16.0 4.5 19 39-57 18-36 (71) 332 1gh6_A Large T antigen; tumor 36.9 12 0.00055 17.6 1.8 30 41-74 8-43 (114) 333 1x57_A Endothelial differentia 36.6 19 0.00084 16.4 2.7 35 17-58 13-47 (91) 334 2k9l_A RNA polymerase sigma fa 36.5 22 0.00097 16.0 5.8 44 16-63 31-74 (76) 335 3dn7_A Cyclic nucleotide bindi 36.5 5.7 0.00025 19.8 0.0 26 36-62 168-193 (194) 336 3knw_A Putative transcriptiona 36.3 22 0.00097 15.9 4.1 54 1-58 1-55 (212) 337 2dql_A PEX protein; circadian 36.0 22 0.00098 15.9 6.4 47 21-70 26-75 (115) 338 1dgw_A Canavalin; duplicated s 35.6 11 0.00048 18.0 1.3 34 37-71 145-178 (178) 339 3isp_A HTH-type transcriptiona 35.5 23 0.001 15.9 6.0 50 39-90 22-74 (303) 340 1utx_A CYLR2; DNA-binding prot 35.1 21 0.00092 16.1 2.7 19 39-57 16-34 (66) 341 2hwv_A DNA-binding response re 35.0 23 0.001 15.8 6.2 49 32-81 58-119 (121) 342 2q0o_A Probable transcriptiona 35.0 23 0.001 15.8 3.6 12 55-66 101-112 (236) 343 2ofy_A Putative XRE-family tra 34.8 21 0.00096 16.0 2.7 19 39-57 29-47 (86) 344 3ke2_A Uncharacterized protein 34.7 23 0.001 15.8 3.9 69 2-79 6-81 (117) 345 1l3l_A Transcriptional activat 34.3 23 0.001 15.7 3.6 10 57-66 101-110 (234) 346 3i53_A O-methyltransferase; CO 34.1 24 0.0011 15.7 5.8 39 39-78 40-78 (332) 347 3k7a_M Transcription initiatio 34.1 6.6 0.00029 19.4 0.0 25 39-63 188-212 (345) 348 1umq_A Photosynthetic apparatu 34.1 24 0.0011 15.7 2.9 21 39-59 56-76 (81) 349 3bd1_A CRO protein; transcript 34.0 23 0.001 15.8 2.8 21 37-57 11-31 (79) 350 1r69_A Repressor protein CI; g 33.9 24 0.0011 15.7 4.5 20 39-58 16-35 (69) 351 1bl0_A Protein (multiple antib 33.8 24 0.0011 15.7 5.3 41 19-63 13-53 (129) 352 3ivp_A Putative transposon-rel 33.3 24 0.0011 15.6 4.8 36 15-57 10-45 (126) 353 1wj5_A Hypothetical protein (r 33.0 25 0.0011 15.6 3.4 70 13-82 20-111 (120) 354 3fym_A Putative uncharacterize 32.9 25 0.0011 15.6 3.0 40 18-60 28-74 (130) 355 3d6k_A Putative aminotransfera 31.8 18 0.00079 16.5 1.9 23 44-66 11-33 (422) 356 1eto_A FIS, factor for inversi 31.5 26 0.0012 15.4 3.0 20 40-59 74-93 (98) 357 2z9m_A Response regulator YYCF 31.3 26 0.0012 15.4 4.7 50 32-82 51-113 (120) 358 3e7l_A Transcriptional regulat 31.2 26 0.0012 15.4 3.1 45 10-61 8-56 (63) 359 3lst_A CALO1 methyltransferase 31.1 26 0.0012 15.4 6.7 52 22-77 39-93 (348) 360 3dew_A Transcriptional regulat 30.6 27 0.0012 15.3 4.1 49 1-58 1-49 (206) 361 2h98_A HTH-type transcriptiona 30.4 8.2 0.00037 18.7 0.0 47 39-86 17-66 (313) 362 3clc_A Regulatory protein; pro 30.4 27 0.0012 15.3 5.0 76 13-125 7-82 (82) 363 3kz3_A Repressor protein CI; f 30.3 26 0.0012 15.4 2.6 21 36-57 25-45 (80) 364 2ev1_A Hypothetical protein RV 30.0 28 0.0012 15.3 3.8 32 31-62 72-103 (222) 365 2hqr_A Putative transcriptiona 28.7 29 0.0013 15.1 4.7 50 32-82 158-219 (223) 366 2ewt_A BLDD, putative DNA-bind 28.2 30 0.0013 15.1 2.6 20 37-57 22-43 (71) 367 1mgt_A MGMT, protein (O6-methy 27.9 30 0.0013 15.0 5.2 50 6-61 84-133 (174) 368 3dpl_C Cullin-5; ubiquitin, NE 27.8 30 0.0013 15.0 3.5 35 33-68 212-246 (382) 369 1al3_A Cys regulon transcripti 27.2 10 0.00045 18.2 0.0 42 39-80 18-62 (324) 370 1uss_A Histone H1; DNA binding 27.0 31 0.0014 14.9 5.1 64 11-77 6-78 (88) 371 2eh3_A Transcriptional regulat 27.0 31 0.0014 14.9 4.1 38 16-57 5-42 (179) 372 3c1d_A Protein ORAA, regulator 26.9 31 0.0014 14.9 6.0 52 13-71 2-66 (159) 373 1tbx_A ORF F-93, hypothetical 26.8 31 0.0014 14.9 2.8 42 41-82 30-74 (99) 374 3hot_A Transposable element ma 26.8 31 0.0014 14.9 8.0 29 39-70 88-116 (345) 375 2qen_A Walker-type ATPase; unk 26.3 32 0.0014 14.9 4.8 38 40-78 303-340 (350) 376 3crj_A Transcription regulator 25.8 33 0.0015 14.8 3.6 51 1-55 1-52 (199) 377 3ci3_A Cobalamin adenosyltrans 25.5 33 0.0015 14.8 3.4 52 13-64 92-147 (194) 378 2elj_A Transcriptional adapter 25.4 33 0.0015 14.7 3.3 48 15-67 41-88 (88) 379 1uth_A LYSR-type regulatory pr 24.7 12 0.00053 17.7 0.0 43 39-81 30-74 (315) 380 2hqn_A Putative transcriptiona 24.3 35 0.0015 14.6 4.4 49 33-82 45-105 (109) 381 1iuf_A Centromere ABP1 protein 24.1 20 0.00087 16.3 1.0 25 38-62 31-61 (144) 382 1kgs_A DRRD, DNA binding respo 23.9 35 0.0016 14.6 4.8 47 32-79 166-224 (225) 383 3f52_A CLP gene regulator (CLG 23.6 36 0.0016 14.5 4.8 37 14-57 25-61 (117) 384 3g2b_A Coenzyme PQQ synthesis 23.5 36 0.0016 14.5 3.7 28 41-68 63-94 (95) 385 3kxa_A NGO0477 protein, putati 23.5 36 0.0016 14.5 2.6 22 36-58 81-102 (141) 386 2h9b_A HTH-type transcriptiona 22.8 14 0.00061 17.3 0.0 46 39-85 17-65 (312) 387 3iec_E 120 kDa protein, cytoto 22.7 37 0.0017 14.4 2.2 17 10-26 33-49 (125) 388 2p5t_A Putative transcriptiona 22.1 14 0.00064 17.1 0.0 18 39-56 16-33 (158) 389 2eq8_C Pyruvate dehydrogenase 21.8 14 0.00064 17.1 -0.1 18 37-54 3-20 (40) 390 3k9t_A Putative peptidase; str 21.8 39 0.0017 14.3 4.4 31 39-69 404-434 (435) 391 1bh9_B TAFII28; histone fold, 21.6 39 0.0017 14.3 2.6 21 42-62 10-30 (89) 392 3kkc_A TETR family transcripti 21.4 39 0.0018 14.3 4.5 36 16-55 15-50 (177) 393 3i71_A Ethanolamine utilizatio 21.4 40 0.0018 14.2 5.9 41 39-80 20-60 (68) 394 3clo_A Transcriptional regulat 21.2 40 0.0018 14.2 3.9 25 39-63 214-238 (258) 395 1rep_C REPE54, protein (replic 21.2 40 0.0018 14.2 2.6 56 12-68 31-96 (251) 396 3e3v_A Regulatory protein RECX 21.0 40 0.0018 14.2 2.8 31 39-69 34-67 (177) 397 2nra_C PI protein; protein-DNA 20.9 41 0.0018 14.2 2.7 52 15-67 32-90 (276) 398 1fp1_D Isoliquiritigenin 2'-O- 20.8 41 0.0018 14.2 3.5 49 21-70 40-101 (372) 399 2ibl_A Fibritin; foldon, trime 20.7 38 0.0017 14.4 1.9 37 44-80 73-110 (130) 400 1zk8_A Transcriptional regulat 20.7 41 0.0018 14.2 3.6 37 15-55 10-46 (183) 401 2zcm_A Biofilm operon icaabcd 20.5 41 0.0018 14.1 3.8 42 11-56 5-46 (192) 402 3jsj_A Putative TETR-family tr 20.2 42 0.0019 14.1 4.0 40 14-58 10-49 (190) 403 2hgc_A YJCQ protein; SR346, st 20.2 42 0.0019 14.1 3.3 27 44-70 23-49 (102) 404 2opt_A Actii protein; helical 20.0 42 0.0019 14.1 2.4 40 16-59 9-48 (234) No 1 >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} Probab=99.92 E-value=1.2e-23 Score=175.54 Aligned_cols=119 Identities=29% Similarity=0.434 Sum_probs=104.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH Q ss_conf 87777768889889999999999976498998881788789999858987899999999988791673178336862880 Q T0586 2 NAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 2 ~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125) ++|+ +..++|+|+||+++|++.|.+|.|+||++|||+++||+.|||||+|||+||..|+.+|+|++++|+|+||+... T Consensus 2 ~~m~--~~~~~P~y~qI~~~l~~~I~~g~l~~G~~LPs~~~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g~G~~V~~~~ 79 (126) T 3by6_A 2 QAMA--ITQKRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGNT 79 (126) T ss_dssp CCCC--CCCCCCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECSCH T ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCC T ss_conf 8886--67888899999999999998599999399955999999979898999999999998893799748158981896 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 78999999999999999999999819999899999999986 Q T0586 82 ALFDQLKKELADAITERFLEEAKSIGLDDQTAIELLIKRSR 122 (125) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (125) ..............+..++..+...+++.+++.+++.+... T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~l~ 120 (126) T 3by6_A 80 ASVKNSNQNRLLADLSQVIAELIKSGVKGERIKKIVNDILG 120 (126) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 15448899999999999999999959899999999999976 No 2 >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A Probab=99.91 E-value=1.9e-23 Score=174.09 Aligned_cols=112 Identities=23% Similarity=0.444 Sum_probs=97.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHH--HH Q ss_conf 8988999999999997649899888178878999985898789999999998879167317833686288078999--99 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQ--LK 88 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~--~~ 88 (125) ..|+|+||+++|++.|.+|.|+||++|||+++||++|||||+|||+||..|+.+|+|++++|+||||+........ .. T Consensus 2 ~iP~Y~QI~~~i~~~I~~g~l~pG~kLPse~eLa~~~~VSr~tVR~Al~~L~~~GlI~~~~g~Gt~V~~~~~~~~~~~~~ 81 (129) T 2ek5_A 2 TVPLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALIRERRD 81 (129) T ss_dssp -CCHHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEECTTHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHH T ss_conf 98799999999999998599999499948999999969789999999999998890799638636889998799999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 9999999999999999819999899999999986 Q T0586 89 KELADAITERFLEEAKSIGLDDQTAIELLIKRSR 122 (125) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (125) ..+....+..++..+..+|++.+++..++.+... T Consensus 82 ~~~~~~~~~~~~~~~~~lgi~~~el~~l~e~~~~ 115 (129) T 2ek5_A 82 AAFAATYVAPLIDESIHLGFTRARIHALLDQVAE 115 (129) T ss_dssp HHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9999999999999999859799999999999998 No 3 >3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} Probab=99.91 E-value=2.3e-25 Score=186.76 Aligned_cols=121 Identities=31% Similarity=0.524 Sum_probs=102.9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 98777776888988999999999997649899888178878999985898789999999998879167317833686288 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) ||||+ +++++|+|+||+++|+..|.+|.|+||++|||+++||+.|||||+|||+||..|+.+|+|++++|+|+||+.. T Consensus 1 ~~~m~--~~~~~P~y~qI~~~i~~~I~~g~l~~G~kLPs~r~La~~~~VSr~tVr~Al~~L~~~G~i~~~~g~G~~V~~~ 78 (126) T 3ic7_A 1 SNAMN--FKESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFVASG 78 (126) T ss_dssp -------------CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEECTT T ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCC T ss_conf 98777--8999989999999999999849999959977899999875939999999999999889679963877897789 Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 078999999--9999999999999998199998999999999861 Q T0586 81 KALFDQLKK--ELADAITERFLEEAKSIGLDDQTAIELLIKRSRN 123 (125) Q Consensus 81 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 123 (125) ......... .+....+..++..+..+|++.+++.+++.+..+. T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~eel~~~~~e~i~~ 123 (126) T 3ic7_A 79 AKMLIHSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQR 123 (126) T ss_dssp HHHHHHHHHHTTCCCCCSHHHHHHHHHTTCCHHHHHHHHHTHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 888999999999999999999999999598999999999999987 No 4 >2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} Probab=99.87 E-value=4.6e-22 Score=165.02 Aligned_cols=80 Identities=34% Similarity=0.505 Sum_probs=76.7 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHH Q ss_conf 77776888988999999999997649899888178878999985898789999999998879167317833686288078 Q T0586 4 MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL 83 (125) Q Consensus 4 M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~ 83 (125) |+++=++..|+|+||++.|++.|.+|.|+||++||||++||++|||||+|||+||..|+.+|+|.+++|+||||+..... T Consensus 1 ~~~~~~~~~Ply~qI~~~i~~~I~~G~l~pG~~LPsE~~La~~~~VSr~TVR~Al~~L~~eGli~~~~G~GtfV~~~~~~ 80 (243) T 2wv0_A 1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKME 80 (243) T ss_dssp CCCCTTSSSCHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECCCCCH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC T ss_conf 90579999888999999999999829999939993699999997969999999999999779889988833502788411 No 5 >3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} Probab=99.85 E-value=2.2e-21 Score=160.64 Aligned_cols=78 Identities=27% Similarity=0.413 Sum_probs=72.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 98777776888988999999999997649899888178878999985898789999999998879167317833686288 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) ||+|. .+.|+|+||++.|++.|.+|.|+||++||||++||+.|||||+|||+|+..|+.+|+|++++|+||||+.. T Consensus 1 ~~~m~----~k~p~y~~i~~~i~~~I~~g~~~~G~~LPsE~eLa~~~~VSr~TvR~Al~~L~~~Gli~~~~g~GtfV~~~ 76 (236) T 3edp_A 1 SNAMA----AKKPLFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236) T ss_dssp ----------CCCHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC T ss_pred CCCCC----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCCEEEECCC T ss_conf 98666----78889999999999999839999919992799999998949999999999999716526448802498877 Q ss_pred HH Q ss_conf 07 Q T0586 81 KA 82 (125) Q Consensus 81 ~~ 82 (125) .. T Consensus 77 ~~ 78 (236) T 3edp_A 77 LT 78 (236) T ss_dssp CC T ss_pred CC T ss_conf 64 No 6 >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} Probab=99.85 E-value=2.5e-21 Score=160.25 Aligned_cols=71 Identities=20% Similarity=0.422 Sum_probs=68.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 88988999999999997649899888178878999985898789999999998879167317833686288 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) +.+|+|.||++.|++.|.+|.|+||++||||++||++|||||+|||+||..|+.+|+|++++|+||||+.. T Consensus 26 ~~~P~Y~qI~~~L~~~I~~G~l~pG~rLPSereLA~~lgVSR~TVr~Al~~L~~eGlI~~~~G~GtfV~~~ 96 (272) T 3eet_A 26 GEQPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSGTYVRER 96 (272) T ss_dssp -CCCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EEECCC T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCC T ss_conf 99988999999999999839999939993799999998959999999999999869978359944797677 No 7 >3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2 Probab=99.82 E-value=1.4e-20 Score=155.36 Aligned_cols=72 Identities=26% Similarity=0.432 Sum_probs=68.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH Q ss_conf 889889999999999976498998881788789999858987899999999988791673178336862880 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125) +.+|.|+||++.|++.|.+|.|+||++||||++||++|||||+|||+||..|+.+|+|.+++|+||||+... T Consensus 2 ~~~~ky~qI~~~l~~~I~~g~l~~G~~LPsE~~La~~~gVSR~TvR~Al~~L~~eG~i~~~~g~Gt~V~~~~ 73 (239) T 3bwg_A 2 NAMLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHK 73 (239) T ss_dssp ------CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCC T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCCCEEECCCC T ss_conf 986799999999999997599999299925999999989799999999999997246052488733999876 No 8 >2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2 Probab=99.81 E-value=1.7e-21 Score=161.25 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=73.5 Q ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 7777768--88988999999999997649899888178878999985898789999999998879167317833686288 Q T0586 3 AMNPTFH--ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 3 ~M~~~~~--~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) +|...+| +..|+|.||+++|++.|.+|.|+||++||||++||++|||||+|||+||..|+.+|+|++++|+||||+.. T Consensus 4 ~~~~~~~r~s~~ply~qi~~~i~~~I~~g~~~~G~~LPsE~~La~~~~vSr~TvR~Al~~L~~eGlI~~~~G~Gt~V~~~ 83 (247) T 2ra5_A 4 SLDLSVDRSSPVPLYFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGVGTQVVHS 83 (247) T ss_dssp ----------------------------------------------------------------CEEEEEC--------- T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCC T ss_conf 25877279999888999999999999859989919993799999997969999999999999769779668967898877 Q ss_pred HH Q ss_conf 07 Q T0586 81 KA 82 (125) Q Consensus 81 ~~ 82 (125) .. T Consensus 84 ~~ 85 (247) T 2ra5_A 84 KV 85 (247) T ss_dssp -- T ss_pred CC T ss_conf 65 No 9 >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 Probab=99.76 E-value=3e-19 Score=146.54 Aligned_cols=73 Identities=25% Similarity=0.456 Sum_probs=69.6 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH Q ss_conf 8889889999999999976498998881788789999858987899999999988791673178336862880 Q T0586 9 HADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 9 ~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125) .+..|+|+||+++|++.|.+|.|+||++|||+++||+.||||++|||+||..|+.+|+|++++|+||||+... T Consensus 7 ~~~~p~y~qi~~~i~~~I~~G~~~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~ 79 (102) T 1v4r_A 7 APEGKGYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEKNP 79 (102) T ss_dssp CCSSCCHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCSCC T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCC T ss_conf 9999899999999999998499999699868999999979799999999999998896799748779987798 No 10 >3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} Probab=99.76 E-value=1.5e-17 Score=135.38 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=80.0 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHH Q ss_conf 88999999999997649899888178878999985898789999999998879167317833686288078999999999 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELA 92 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~ 92 (125) ...++|+++|++.|++|.|+||++| ++++||+.|||||+|||+|+..|+.+|+|++.||+|+||+...........++. T Consensus 26 ~~~~~v~~~lr~~I~~g~l~pG~~L-~e~~La~~~gvSRtpVReAL~~L~~eGlv~~~p~~G~~V~~~~~~~~~~~~~~R 104 (237) T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALR 104 (237) T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHH T ss_conf 4899999999999982999980975-999999987949699999999999878874048998501334122212689999 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 99999999999981999989999 Q T0586 93 DAITERFLEEAKSIGLDDQTAIE 115 (125) Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ 115 (125) ..++...........+.+++.. T Consensus 105 -~~lE~~a~~~a~~~~~~~~l~~ 126 (237) T 3c7j_A 105 -ILLESEALRLSIPLLDADDLAA 126 (237) T ss_dssp -HHHHHHHHHHHGGGCCHHHHHH T ss_pred -HHHHHHHHHHHHHCCCHHHHHH T ss_conf -8789999999987288999999 No 11 >3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* Probab=99.75 E-value=1.6e-17 Score=135.19 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=71.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHH Q ss_conf 89889999999999976498998881788789999858987899999999988791673178336862880789999999 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKE 90 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~ 90 (125) ..++.+|||++|++.|.+|.|+||++| +|++||++|||||+|||+|+..|+.+|+|+..||+|++|+...........+ T Consensus 18 ~~~l~e~vy~~i~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~p~~G~~V~~~~~~~i~e~~~ 96 (226) T 3dbw_A 18 VDLVRTKVYNLLKEMILNHELKLGEKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETIE 96 (226) T ss_dssp CHHHHHHHHHHHHHHHHTTSSCTTCBC-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 222999999999999984999980977-9999999989199999999999997897685369865455312455566788 Q ss_pred H Q ss_conf 9 Q T0586 91 L 91 (125) Q Consensus 91 ~ 91 (125) + T Consensus 97 ~ 97 (226) T 3dbw_A 97 T 97 (226) T ss_dssp H T ss_pred H T ss_conf 8 No 12 >1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A Probab=99.74 E-value=7.3e-18 Score=137.43 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=67.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 88988999999999997649899888178878999985898789999999998879167317833686288 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) ....++.|++++|.+.|.+|.|+||++||||++||+.|||||+|||+||..|+.+|+|+++||+|+||... T Consensus 4 ~~~~~~~~~~~~I~~~I~~g~~~pG~~LPsE~eLa~~~gVSr~~VReAl~~L~~~Glv~~~~g~G~~V~~~ 74 (239) T 1hw1_A 4 KAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNF 74 (239) T ss_dssp -CCSHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECCH T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEECCC T ss_conf 88999999999999999859999819890699999997929999999999999868815425884167678 No 13 >3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} Probab=99.74 E-value=6.2e-17 Score=131.31 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=75.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHH Q ss_conf 89889999999999976498998881788789999858987899999999988791673178336862880789999999 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKE 90 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~ 90 (125) +.++.++||+.|++.|.+|.|+||++| +|++||+.|||||+|||+|+..|+.+|+|+.+||+|++|+...........+ T Consensus 14 ~~s~~d~v~~~l~~~I~~G~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlV~~~p~~G~~V~~~~~~~~~ei~~ 92 (222) T 3ihu_A 14 DGSASDTVFFGIMSGLELGTFVPGQRL-VETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETLDVLD 92 (222) T ss_dssp --CHHHHHHHHHHHHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHH T ss_conf 999999999999999985999991966-9999999989888999999999997898476358825997401443201478 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q T0586 91 LADAITERFLEE 102 (125) Q Consensus 91 ~~~~~~~~~~~~ 102 (125) +.. .++..+.. T Consensus 93 ~R~-~lE~~~~~ 103 (222) T 3ihu_A 93 VAE-RMTGLLAR 103 (222) T ss_dssp HHH-HHHHHHHH T ss_pred HHH-HHHHHHHH T ss_conf 887-76789999 No 14 >2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} Probab=99.73 E-value=1.2e-17 Score=135.95 Aligned_cols=67 Identities=27% Similarity=0.417 Sum_probs=63.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 9889999999999976498998881788789999858987899999999988791673178336862 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) ..+|++|+++|++.|.+|.|+||++||||++||+.|||||+|||+|+..|+.+|+|+++||+|++|. T Consensus 3 ~~~~e~v~~~i~~~I~~g~l~pG~~LpsE~eLa~~~gVSRt~VREAL~~L~~~Glv~~~~g~G~~v~ 69 (239) T 2di3_A 3 VKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSG 69 (239) T ss_dssp HHHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGC T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCCCC T ss_conf 7499999999999998599998199910999999989599999999999886080341679777546 No 15 >3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} Probab=99.73 E-value=5.9e-18 Score=138.05 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=65.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH Q ss_conf 889889999999999976498998881788789999858987899999999988791673178336862880 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125) +.+|+|.||++.+++.|.+| |+||++||||++||++|||||+|||+|+..|+++|+|.+ +|+||||+... T Consensus 10 ~p~~l~~qi~~~~~~~i~~g-l~~G~~LPsE~eLa~~~gVSR~TvR~AL~~L~~eGlI~r-rG~GtfV~~~~ 79 (248) T 3f8m_A 10 APRILKHQVVRAELDRMLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGRTTVVARPK 79 (248) T ss_dssp ----CHHHHHHHHHHHHHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECCCC T ss_pred CCCCHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEC-CCCEEEECCCC T ss_conf 98067999999999999836-999786846999999979699999999999997077620-48516973676 No 16 >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 Probab=99.72 E-value=5.9e-17 Score=131.46 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=71.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHH Q ss_conf 89889999999999976498998881788789999858987899999999988791673178336862880789999999 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKE 90 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~ 90 (125) .+++.+||++.|++.|.+|.|+||++| +|++||+.|||||+|||+|+..|+.+|+|+++||+|+||+...........+ T Consensus 26 r~s~~e~v~~~Lr~~I~~g~l~pG~~L-~E~~La~~~gVSRtpVREAL~~L~~~GlV~~~~~~G~~V~~~~~~~i~el~~ 104 (239) T 2hs5_A 26 RTSRTTRVAGILRDAIIDGTFRPGARL-SEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYI 104 (239) T ss_dssp -CHHHHHHHHHHHHHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 789999999999999980999990982-8999999989597999999999997010021078877543223654100699 Q ss_pred H Q ss_conf 9 Q T0586 91 L 91 (125) Q Consensus 91 ~ 91 (125) + T Consensus 105 ~ 105 (239) T 2hs5_A 105 C 105 (239) T ss_dssp H T ss_pred H T ss_conf 9 No 17 >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D Probab=97.81 E-value=0.00024 Score=48.56 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=51.5 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 8878999985898789999999998879167317833686288078999999999999999999999819999899 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) ++..+||+.+|||+.||.++++.|...|||...++.|.++++........... ....+..|+ ..+|++.+.+ T Consensus 23 v~~~~iA~~L~vs~~svt~~lk~L~~~GlV~~~~~~~i~LT~~G~~~A~~i~r-rHrl~e~fl---~~lg~~~~~a 94 (142) T 1on2_A 23 ARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVY-RHELLEQFL---RIIGVDEEKI 94 (142) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH-HHHHHHHHH---HHTTCCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHH-HHHHHHHHH---HHHCCCHHHH T ss_conf 76999999969887899999999997799650689866776789999999999-999999999---9819981279 No 18 >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} Probab=97.63 E-value=0.00064 Score=45.74 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=62.3 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 99999999976498998881788789999858987899999999988791673178336862880789999999999999 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAIT 96 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~~~~~ 96 (125) ++.+.....|..=.-..| . ++..+||+.+|||+.+|.++++.|..+|||...++.|.+.++........... ....+ T Consensus 36 e~~EdYLe~Iy~L~~~~~-~-vr~~dIA~~L~vs~~sV~~~l~~L~~~GlI~~~~~~~i~LT~~G~~~A~~i~r-rHrll 112 (155) T 2h09_A 36 ELIDDYVELISDLIREVG-E-ARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRE-RHQIV 112 (155) T ss_dssp HHHHHHHHHHHHHHHHHS-C-CCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHH-HHHHH T ss_pred HHHHHHHHHHHHHHHCCC-C-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHH-HHHHH T ss_conf 579999999999996289-7-60999999969887799999999987899776599897889879999999999-99999 Q ss_pred HHHHHHHHHCCCCHHHHHH Q ss_conf 9999999981999989999 Q T0586 97 ERFLEEAKSIGLDDQTAIE 115 (125) Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ 115 (125) +.|+. .+|++.+++-+ T Consensus 113 e~fL~---~lGv~~~~a~~ 128 (155) T 2h09_A 113 ENFLL---VLGVSPEIARR 128 (155) T ss_dssp HHHHH---HHTCCHHHHHH T ss_pred HHHHH---HCCCCHHHHHH T ss_conf 99999---90988899999 No 19 >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Probab=97.54 E-value=0.0011 Score=44.30 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=45.7 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHH Q ss_conf 8817887899998589878999999999887916731783368628807899999 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLK 88 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~ 88 (125) |... +..+||+.++||+.||.++++.|..+|||...+++|...++......... T Consensus 18 ~~~v-~~~~iA~~L~v~~~sv~~~l~~L~~~glv~~~~~~~v~LT~~G~~~a~~i 71 (214) T 3hrs_A 18 HNKI-TNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDL 71 (214) T ss_dssp CSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH T ss_conf 9987-59999999789928999999999988997863895189878799999999 No 20 >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Probab=97.51 E-value=0.0011 Score=44.10 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=44.7 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHH Q ss_conf 88178878999985898789999999998879167317833686288078999 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQ 86 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~ 86 (125) |... +..+||+.+|||+.||.++++.|...|||...+.+|...++.-..... T Consensus 22 ~~~v-~~~~lA~~L~vs~~svt~~l~kL~~~Glv~~~~y~~i~LT~~G~~~A~ 73 (230) T 1fx7_A 22 GVTP-LRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAI 73 (230) T ss_dssp TSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHH T ss_pred CCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHH T ss_conf 9975-199999997899168999999998799889739987788878999999 No 21 >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... Probab=97.51 E-value=0.001 Score=44.38 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=43.5 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHH Q ss_conf 88789999858987899999999988791673178336862880789999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQL 87 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~ 87 (125) +...+||+.+|||+.||.++++.|..+|||...+.+|...++.-...... T Consensus 25 ~~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~~~~~~i~LT~~G~~~A~~ 74 (226) T 2qq9_A 25 PLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATA 74 (226) T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHH T ss_conf 72999999968990799999999998899998599885679889999999 No 22 >1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 Probab=97.20 E-value=0.00036 Score=47.38 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=37.8 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 8178878999985898789999999998879167317833686288 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) ..+ |..+||+.||||+.|||+-+..|+++|++....+.|+..... T Consensus 35 ~~v-t~~eLa~~l~VS~~TIrrDl~~L~~~G~~i~~~~gGy~l~~~ 79 (187) T 1j5y_A 35 EPV-SGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG 79 (187) T ss_dssp SCB-CHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECCTT T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEECCC T ss_conf 977-699999997979999999999999779978973798897775 No 23 >1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A Probab=97.16 E-value=0.00096 Score=44.60 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=52.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 98899999999999764989988817887899998589-8789999999998879167317833 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV-NPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~V-Sr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) +|...+|.++|++.+....++ ||.++||+.+|+ |++||..-++.|+..|++...+|+- T Consensus 5 T~rq~~il~~I~~~~~~~g~~-----PS~~EIa~~~GikS~stv~~~l~~L~~~G~l~~~~~~~ 63 (202) T 1jhf_A 5 TARQQEVFDLIRDHISQTGMP-----PTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGAS 63 (202) T ss_dssp CHHHHHHHHHHHHHHHHHSSC-----CCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSS T ss_pred CHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 999999999999999982989-----76999999829997378999875134228511014775 No 24 >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} Probab=97.13 E-value=0.00067 Score=45.61 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=50.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC--EEEECC Q ss_conf 877777688898899999999999764989988817887899998589878999999999887916731783--368628 Q T0586 2 NAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM--GSFVTS 79 (125) Q Consensus 2 ~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~--G~~V~~ 79 (125) ++|+.+|. ++-.+.-.+. ..+++++ |.+++|+.+|+++..+++.++.|...|+|.+.+|. |+..+. T Consensus 5 ~~m~~~f~--------~Al~~L~~La---~~~~~~~-ss~eIA~~~~i~~~~l~kIl~~L~kaGlv~S~rG~~GGy~Lar 72 (162) T 3k69_A 5 SNMKLDFS--------VAVHSILYLD---AHRDSKV-ASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDL 72 (162) T ss_dssp --CTHHHH--------HHHHHHHHHH---TTTTSCB-CHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCS T ss_pred CCCCHHHH--------HHHHHHHHHH---HCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 65222899--------9999999998---4899873-6999999889099999999999987675400356788642468 Q ss_pred CH Q ss_conf 80 Q T0586 80 DK 81 (125) Q Consensus 80 ~~ 81 (125) +. T Consensus 73 ~p 74 (162) T 3k69_A 73 AL 74 (162) T ss_dssp CG T ss_pred CH T ss_conf 85 No 25 >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Probab=97.13 E-value=0.0031 Score=41.26 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=53.9 Q ss_pred CCCCCCCCCCHHHHHHHHHH-------HHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-CCEE Q ss_conf 77776888988999999999-------997649899888178878999985898789999999998879167317-8336 Q T0586 4 MNPTFHADKPIYSQISDWMK-------KQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR-GMGS 75 (125) Q Consensus 4 M~~~~~~~~Ply~qI~~~l~-------~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~-g~G~ 75 (125) |+..++...+++++++.-++ -.|+. .+..|+ . +..+|++.+|+|++||.+-++.|...|+|..++ |+.. T Consensus 1 m~~~~~~~~~~~~~~~~i~kaLs~p~Rl~Il~-~L~~~~-~-~v~eLa~~l~is~stvS~HL~~L~~aGlV~~~k~Gr~~ 77 (108) T 2kko_A 1 MAGQSDRKAALLDQVARVGKALANGRRLQILD-LLAQGE-R-AVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQ 77 (108) T ss_dssp CCSCCCTHHHHHHHHHHHHHHHTTSTTHHHHH-HHTTCC-E-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEE T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH-HHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEE T ss_conf 99876431688999999999948999999999-998199-7-89999999890999999999999988922799888999 Q ss_pred EECCCHHH Q ss_conf 86288078 Q T0586 76 FVTSDKAL 83 (125) Q Consensus 76 ~V~~~~~~ 83 (125) |..-.... T Consensus 78 ~Y~l~~~~ 85 (108) T 2kko_A 78 YYRIAGED 85 (108) T ss_dssp EEEESCHH T ss_pred EEEECHHH T ss_conf 99989099 No 26 >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Probab=97.02 E-value=0.0059 Score=39.39 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=39.6 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHH Q ss_conf 81788789999858987899999999988791673178----33686288078 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKAL 83 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~ 83 (125) ..+ +..+||+.+|+|+++|..++..|++.|+|++.+. +.+|+...... T Consensus 40 ~p~-t~~eLa~~l~isks~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t~~~ 91 (152) T 1ku9_A 40 KPL-TISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFS 91 (152) T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHH T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHH T ss_conf 896-9999997848665149999999998899898528988874687778655 No 27 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=96.97 E-value=0.00096 Score=44.59 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=40.3 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE-ECCCCEEEECCCH Q ss_conf 88178878999985898789999999998879167-3178336862880 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY-AKRGMGSFVTSDK 81 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~-~~~g~G~~V~~~~ 81 (125) |+.+ |=.+||+++||||+.|-++++.|+++||.. +.+++|+...... T Consensus 17 g~~~-SG~~la~~L~iSR~avwk~i~~L~~~G~~i~~~~~~GY~l~~~~ 64 (321) T 1bia_A 17 GEFH-SGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPEPI 64 (321) T ss_dssp SSCB-CHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSSCC T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCEEECCCC T ss_conf 9938-79999999798999999999999976973899789876978651 No 28 >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 Probab=96.96 E-value=0.006 Score=39.38 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=48.7 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-CCEEEECCCHHHH Q ss_conf 99999997649899888178878999985898789999999998879167317-8336862880789 Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR-GMGSFVTSDKALF 84 (125) Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~-g~G~~V~~~~~~~ 84 (125) +..|+.--..+.......| |..+||+.+++|+.|+.+.++.|++.|||.+.+ +++.+|.-.+... T Consensus 10 ~~aL~~L~~~~~~~~~~~i-t~~eLa~~l~is~~tvsr~l~~Le~~GlI~R~~D~R~~~v~LTekG~ 75 (230) T 3cta_A 10 YRAIKKIKEAAEASNRAYL-TSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGL 75 (230) T ss_dssp HHHHHHHHHHTTTSSEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH T ss_pred HHHHHHHHHHHHCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEECHHHH T ss_conf 9999999984520579986-89999999888887999999999988998972379734899888799 No 29 >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Probab=96.84 E-value=0.0038 Score=40.67 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=46.8 Q ss_pred CHHHHHHHHHHHHHH-CCCCCCCC----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHH Q ss_conf 889999999999976-49899888----1788789999858987899999999988791673178336862880789 Q T0586 13 PIYSQISDWMKKQMI-TGEWKGED----KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALF 84 (125) Q Consensus 13 Ply~qI~~~l~~~I~-~G~l~~G~----~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~ 84 (125) +..++|+..|...-. .|.-..|. .-++..+||+.+|+||.||.++++.|+++|+|... |+|.++..+...+ T Consensus 134 ~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~eLA~~lG~sretv~r~L~~L~~~g~I~~~-~r~~i~I~d~~~L 209 (222) T 1ft9_A 134 DIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ-GRGHYTIPNLVRL 209 (222) T ss_dssp HHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC-STTCEECSSHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCCEEEECCHHHH T ss_conf 588899999999999838665684278542889999998499899999999999988989987-9985998899999 No 30 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Probab=96.80 E-value=0.0012 Score=43.84 Aligned_cols=41 Identities=5% Similarity=0.254 Sum_probs=37.1 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 88817887899998589878999999999887916731783 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) .|...||...||+.+|+|+.||+++++.|.+.|+|.+.+.+ T Consensus 47 ~g~~~PS~~~La~~~g~s~~tv~~~l~~L~~kG~i~i~~~~ 87 (135) T 2v79_A 47 KGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECE 87 (135) T ss_dssp TTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEE T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 59879899999989695999999999999988997998654 No 31 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=96.72 E-value=0.018 Score=36.19 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=49.4 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE------EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 8878999985898789999999998879167317833------6862880789999999999999999999998199998 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG------SFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) ++..+||..++++++++.++++.|+..|||.+.+..+ .++++................ ...+ .-+++.+ T Consensus 53 ~t~~~La~~l~~~~~~~s~~v~~L~~~g~I~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~----~~~~-~~~l~~~ 127 (146) T 2fbh_A 53 PTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASV----RNDV-LTGIDES 127 (146) T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHHHHHHH----HHHH-TTTCCHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH----HHHH-HHCCCHH T ss_conf 9999999998968989999999997289878615688988578788988999999999999999----9999-9589999 Q ss_pred HHHHH Q ss_conf 99999 Q T0586 112 TAIEL 116 (125) Q Consensus 112 ~~~~l 116 (125) +...+ T Consensus 128 e~~~l 132 (146) T 2fbh_A 128 EQALC 132 (146) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 32 >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Probab=96.71 E-value=0.0014 Score=43.56 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=37.8 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 88817887899998589878999999999887916731783 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) .|...||...||+.+|+|+.||.++++.|.+.|+|.+...+ T Consensus 47 ~~~~~PS~~~LA~~~g~s~~~v~~~l~~L~~kG~i~i~~~~ 87 (128) T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128) T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-- T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 69999999999989792999999999999988997998554 No 33 >1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 Probab=96.65 E-value=0.0032 Score=41.14 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=41.5 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE-ECCC Q ss_conf 988817887899998589878999999999887916731783368-6288 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF-VTSD 80 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~-V~~~ 80 (125) .+|+.+ |.+++|+..|+|+..+++.++.|...|+|.+.+|.|-| .+.+ T Consensus 26 ~~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~kaglv~S~rG~GGy~L~r~ 74 (149) T 1ylf_A 26 NPSSLC-TSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKD 74 (149) T ss_dssp SCGGGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSC T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCEECCC T ss_conf 889977-5999999979499999999999976796886469988620378 No 34 >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Probab=96.63 E-value=0.0053 Score=39.74 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=45.5 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCC---CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 88999999999997649899888---178-87899998589878999999999887916731783368628 Q T0586 13 PIYSQISDWMKKQMITGEWKGED---KLP-SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~---~LP-ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) +..++|+.+|...-. ..+.+. .+| +..+||..+|+||.||.++++.|+++|+|.... +...|.+ T Consensus 152 ~~~~Rl~~~L~~l~~--~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~-~~i~i~d 219 (227) T 3dkw_A 152 NATHRVVRYLLTLAA--HAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDG-REISILD 219 (227) T ss_dssp HHHHHHHHHHHHHHC--SSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESS-SCEEESC T ss_pred HHHHHHHHHHHHHHH--HCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEECC T ss_conf 565789999999855--3267742574388899998886998999999999999789799719-9999837 No 35 >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} Probab=96.57 E-value=0.0038 Score=40.66 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=45.4 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC--EEEECCCH Q ss_conf 9999764989988817887899998589878999999999887916731783--36862880 Q T0586 22 MKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM--GSFVTSDK 81 (125) Q Consensus 22 l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~--G~~V~~~~ 81 (125) |+..+.-...+++..+ |.+++|+.+++|+..+++.++.|...|+|.+.+|. |+..+.+. T Consensus 30 lral~~LA~~~~~~~v-s~~~IAe~~~ip~~~L~KIl~~L~kaGlv~S~rG~~GGy~Lar~p 90 (159) T 3lwf_A 30 LTITLELAKRIGDGPI-SLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159) T ss_dssp HHHHHHHHHTTTSCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT T ss_pred HHHHHHHHHCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEECCCC T ss_conf 9999999808899819-599999887909999999999984189688448887875345694 No 36 >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} Probab=96.53 E-value=0.0076 Score=38.68 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=53.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHCCCHHHHHHHHHHHHHCCEEEECCCCEEE-E Q ss_conf 987777768889889999999999976498998881788789999--8589878999999999887916731783368-6 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGV--KLAVNPNTVSRAYQELERAGYIYAKRGMGSF-V 77 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~--~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~-V 77 (125) ||+|.-...--.|.=.+|-..|.+. | .+ +..+||. .+|+|+.+|++-++.|.+.|||+.. ++|.| + T Consensus 1 ~~~mr~~~~wm~~~d~rILe~L~~~--------g-~~-t~~elA~~~~lgis~~~Vs~hL~~L~~~GLVe~~-~~G~Y~L 69 (111) T 3b73_A 1 SNAMRQSGSWMTIWDDRILEIIHEE--------G-NG-SPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL-ANGVYVI 69 (111) T ss_dssp -CCCCBCCTTCCHHHHHHHHHHHHH--------S-CB-CHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-STTCEEE T ss_pred CCCCCCCHHHHCHHHHHHHHHHHHC--------C-CC-CHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEE T ss_conf 9633143323033799999999985--------9-98-8999987705798999999999999988987777-8654898 Q ss_pred CC Q ss_conf 28 Q T0586 78 TS 79 (125) Q Consensus 78 ~~ 79 (125) ++ T Consensus 70 T~ 71 (111) T 3b73_A 70 TE 71 (111) T ss_dssp CH T ss_pred CH T ss_conf 93 No 37 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A Probab=96.52 E-value=0.05 Score=33.33 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=48.1 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 17887899998589878999999999887916731783----36862880789999999999999999999998199998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) .+ +..+||+.+++++++|.+.++.|++.|||++.++. ..++.-.+... ..... ........... ..-+++.+ T Consensus 51 ~~-t~~eLa~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~-~~~~~-~~~~~~~~~~~-~~~~ls~~ 126 (142) T 3ech_A 51 GL-NLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGL-AIHLH-AELIMSRVHDE-LFAPLTPV 126 (142) T ss_dssp TC-CHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHH-HHHHH-HHHHHHHHHHH-HHTTSCHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEECHHHH-HHHHH-HHHHHHHHHHH-HHHCCCHH T ss_conf 98-99999999793572699999999996132000167767413657888899-99999-99999999999-98479999 Q ss_pred HHHHHH Q ss_conf 999999 Q T0586 112 TAIELL 117 (125) Q Consensus 112 ~~~~l~ 117 (125) +...++ T Consensus 127 e~~~l~ 132 (142) T 3ech_A 127 EQATLV 132 (142) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 38 >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50 Probab=96.49 E-value=0.0069 Score=38.97 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=34.4 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 8817887899998589878999999999887916731783 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) +..+ |..+||+.+|++++||.+.+..|++.|||.+.+.. T Consensus 34 ~~~l-t~~ela~~l~i~~~tv~~~l~~L~~~GlV~r~~~~ 72 (109) T 2d1h_A 34 EKPI-TSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109) T ss_dssp CSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC- T ss_pred CCCC-CHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCC T ss_conf 9698-99999999788723499999999987986362687 No 39 >2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Probab=96.48 E-value=0.0066 Score=39.10 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=47.0 Q ss_pred CHHHHHHHHHHHHHHCCCCC--CCCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 88999999999997649899--88817---887899998589878999999999887916731783368628 Q T0586 13 PIYSQISDWMKKQMITGEWK--GEDKL---PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~--~G~~L---Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) +.-++|+..|......-..+ .|-.+ .|..+||..+|+||.||.++++.|.++|+|....++-..|.+ T Consensus 138 ~~~~Rla~~L~~l~~~~~~~~~~~~~i~~~lt~~~iA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~~i~i~d 209 (220) T 2fmy_A 138 DARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKD 209 (220) T ss_dssp HHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESC T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECC T ss_conf 186699999999999847878888365057249999999799899999999999988999976999899889 No 40 >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Probab=96.45 E-value=0.0066 Score=39.10 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=49.5 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 988999999999997649899888-----17887899998589878999999999887916731783368628 Q T0586 12 KPIYSQISDWMKKQMITGEWKGED-----KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~-----~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .+..++++..|......-..+.++ .+ +..+||+.+|+||.||.++++.|+++|+|...+| ...|.+ T Consensus 117 ~~~~~Rl~~~l~~l~~~~~~~~~~~~~~~~l-t~~~iA~~lg~sr~tvsr~l~~l~~~g~I~~~~~-~i~I~d 187 (202) T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKA-THDELAAAVGSVRETVTKVIGELAREGYIRSGYG-KIQLLD 187 (202) T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-EEEESC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC-EEEECC T ss_conf 1789999999999999836777688756787-8999998979889999999999998899996399-999888 No 41 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=96.42 E-value=0.023 Score=35.58 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=47.8 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE----EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 878999985898789999999998879167317833----6862880789999999999999999999998199998999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG----SFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAI 114 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (125) +..+||+.++++++||.+.+..|++.|||++.+..+ .+|.-.+.... ............... ..-+++.++.. T Consensus 54 t~~eLa~~l~~~~~~vsr~l~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~--~~~~~~~~~~~~~~~-~~~~ls~~e~~ 130 (140) T 2nnn_A 54 PQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRA--ELEAGLAAAREINRQ-ALAPLSLQEQE 130 (140) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHH--HHHHHHHHHHHHHHH-HHTTSCHHHHH T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH--HHHHHHHHHHHHHHH-HHHCCCHHHHH T ss_conf 999999987847362999999997099669833699888678898989999--999999999999999-98289999999 Q ss_pred HHH Q ss_conf 999 Q T0586 115 ELL 117 (125) Q Consensus 115 ~l~ 117 (125) .+. T Consensus 131 ~l~ 133 (140) T 2nnn_A 131 TLR 133 (140) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 42 >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28 Probab=96.40 E-value=0.023 Score=35.48 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=50.4 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 988817887899998589878999999999887916731783----3686288078999999999999999999999819 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIG 107 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (125) .+|..+ +..+||+.++++++||.+.++.|+..|||++.+.. ..+|.-.+.... ... ........+... ...+ T Consensus 46 ~~~~~i-t~~~La~~~~~~~~tvs~~l~~Le~~glv~r~~~~~D~R~~~l~LT~~G~~-~~~-~~~~~~~~~~~~-~~~~ 121 (141) T 3bro_A 46 NKNKEV-LQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK-LET-IILSYMDSDQSQ-MTSG 121 (141) T ss_dssp TTTSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT-THH-HHHHHHHHHHHH-HTTT T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECHHHHH-HHH-HHHHHHHHHHHH-HHHC T ss_conf 899996-999999998988618999999998554534424578887024357777999-999-999999999999-9858 Q ss_pred CCHHHHHHH Q ss_conf 999899999 Q T0586 108 LDDQTAIEL 116 (125) Q Consensus 108 ~~~~~~~~l 116 (125) ++.+++..+ T Consensus 122 l~~ee~~~l 130 (141) T 3bro_A 122 LNKEEVVFL 130 (141) T ss_dssp CCHHHHHHH T ss_pred CCHHHHHHH T ss_conf 999999999 No 43 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=96.39 E-value=0.04 Score=33.97 Aligned_cols=77 Identities=14% Similarity=0.340 Sum_probs=48.6 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 81788789999858987899999999988791673178----33686288078999999999999999999999819999 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDD 110 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (125) ..+ +..+||+.++++++||.++++.|++.|||++.+. +..+|.-.+.... .... ........ ...++++. T Consensus 49 ~~~-t~~ela~~l~~~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~-~~~~-~~~~~~~~---~~~~~l~~ 122 (140) T 3hsr_A 49 EKL-NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKA-IKSP-LAEISVKV---FNEFNISE 122 (140) T ss_dssp CEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH-THHH-HHHHHHHH---HHTSCCCH T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH-HHHH-HHHHHHHH---HHHCCCCH T ss_conf 998-999999998968868999999998179569854378987578888988999-9999-99999999---98779899 Q ss_pred HHHHHHH Q ss_conf 8999999 Q T0586 111 QTAIELL 117 (125) Q Consensus 111 ~~~~~l~ 117 (125) ++...++ T Consensus 123 ~e~~~l~ 129 (140) T 3hsr_A 123 REASDII 129 (140) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 44 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=96.38 E-value=0.037 Score=34.15 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=47.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEEC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 1788789999858987899999999988791673178----336862--8807899999999999999999999981999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVT--SDKALFDQLKKELADAITERFLEEAKSIGLD 109 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (125) .+ +..+||+.++++++||.++++.|++.|||++.+. +..+|. +.............. ..... ..-+++ T Consensus 68 ~~-t~~eLa~~l~i~~~tvsr~v~~Le~~GlV~r~~d~~D~R~~~l~LT~~G~~~~~~~~~~~~----~~~~~-~~~~l~ 141 (166) T 3deu_A 68 DQ-SQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIH----KTRGE-ILAGIS 141 (166) T ss_dssp SE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHHHHH----HHHHH-HHTTCC T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHH----HHHHH-HHHCCC T ss_conf 99-9999999989699899999999996988798620689875788989889999999999999----99999-983899 Q ss_pred HHHHHHH Q ss_conf 9899999 Q T0586 110 DQTAIEL 116 (125) Q Consensus 110 ~~~~~~l 116 (125) ++++..+ T Consensus 142 ~ee~~~l 148 (166) T 3deu_A 142 SEEIELL 148 (166) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 45 >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Probab=96.37 E-value=0.0084 Score=38.40 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=45.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCC---CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 8988999999999997649899888---178-87899998589878999999999887916731783368628 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGED---KLP-SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~---~LP-ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) ..+..++|+.+|...... ..|. .+| +..+||..+|+||.||.++++.|+++|++. + +++..|.+ T Consensus 151 ~~~~~~Rl~~~L~~l~~~---~~~~~~i~l~lt~~~lA~~lgisr~tvsr~L~~L~~~gii~-~-~~~i~I~d 218 (237) T 3fx3_A 151 AQTGAQRVAEFLLELCDC---DTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTV-K-RNHAEIED 218 (237) T ss_dssp CCCHHHHHHHHHHHHCCC--------EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEEC-C-TTEEEESC T ss_pred CCCHHHHHHHHHHHHHHH---CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-E-CCEEEECC T ss_conf 599999999999998874---04566678998999999997988999999999999789689-7-99899888 No 46 >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2 Probab=96.32 E-value=0.02 Score=35.99 Aligned_cols=68 Identities=9% Similarity=0.016 Sum_probs=47.4 Q ss_pred CCHHHHHHHHHHHHHHC-CCCCCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 98899999999999764-9899888178---878999985898789999999998879167317833686288 Q T0586 12 KPIYSQISDWMKKQMIT-GEWKGEDKLP---SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~-G~l~~G~~LP---ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) .+..++|+..|...... |.-..|..+| |..+||..+|+||.||.++++.|+++|+|.... +..+|.+. T Consensus 151 ~~~~~Rv~~~L~~l~~~~~~~~~~~~i~~~~t~~~lA~~~g~sr~tvsr~l~~L~~~glI~~~~-~~i~I~d~ 222 (232) T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDG-KRIKIIDC 222 (232) T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET-TEEEESCH T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CEEEECCH T ss_conf 4499999999999999828888894477461099999897999999999999999889699719-99998689 No 47 >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ... Probab=96.31 E-value=0.013 Score=37.24 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=46.0 Q ss_pred CCHHHHHHHHHHHHHHCCC-CCCCC----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 9889999999999976498-99888----1788789999858987899999999988791673178336862 Q T0586 12 KPIYSQISDWMKKQMITGE-WKGED----KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~-l~~G~----~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) .+...+|+..|........ ...+. ++ |-.+||..+|+||.||.++++.|+++|+|... |+...|. T Consensus 188 ~~~~~Rla~~L~~l~~~~~~~~~~~~~~l~l-t~~~iA~~lG~sr~tvsR~l~~L~~~glI~~~-~~~I~I~ 257 (260) T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKI-TRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTIVVY 257 (260) T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEEEEC T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEECC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEE T ss_conf 0012037999999998747778898268368-99999999799899999999999968979976-9999997 No 48 >2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus} Probab=96.30 E-value=0.0058 Score=39.46 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=47.6 Q ss_pred CCHHHHHHHHHHHHHHCCCC-CCCC--CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 98899999999999764989-9888--178-87899998589878999999999887916731783368628 Q T0586 12 KPIYSQISDWMKKQMITGEW-KGED--KLP-SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l-~~G~--~LP-ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .+..++++..|........- ..+. .+| +-.+||+.+|+||.||.++++.|+++|+|.... ....|.+ T Consensus 110 ~~~~~Rla~~Ll~l~~~~~~~~~~~~i~i~lt~~~lA~~lg~sr~tvsR~l~~L~~~glI~~~~-~~i~I~d 180 (195) T 2zdb_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAY-RRVYLLD 180 (195) T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET-TEEEECC T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CEEEECC T ss_conf 6313689999999997304665445312388899999887997999999999999889899709-9999878 No 49 >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Probab=96.29 E-value=0.017 Score=36.33 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=40.7 Q ss_pred HHHHHHHCCCCCCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 999997649899888-17887899998589878999999999887916731783368628 Q T0586 21 WMKKQMITGEWKGED-KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 21 ~l~~~I~~G~l~~G~-~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .....+..|.-.+.. ++ +-.+||..+|+||.||.++++.|+.+|+|...+++ ..|.+ T Consensus 159 l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~-i~I~d 216 (231) T 3e97_A 159 LYRQRLAAGVPQPEVLPL-GTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRS-VTLLD 216 (231) T ss_dssp HHHHHHHHTCSSTTEECC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSC-EEESC T ss_pred HHHHHHHCCCCCCCEECC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE-EEECC T ss_conf 999875158887603166-89999989699899999999999978989972999-99998 No 50 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=96.28 E-value=0.029 Score=34.91 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=46.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 7887899998589878999999999887916731783----3686288078--999999999999999999999819999 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKAL--FDQLKKELADAITERFLEEAKSIGLDD 110 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (125) + +..+||+.+++++++|.++++.|++.|||++.+.. -.+|.-.+.. .......... ..... ..-++++ T Consensus 67 ~-t~~eLa~~~~v~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~----~~~~~-~~~~l~~ 140 (162) T 3cjn_A 67 L-PIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMR----ASHDR-MFQGITP 140 (162) T ss_dssp E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHHH----HHHHH-HTTTCCH T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHH----HHHHH-HHHCCCH T ss_conf 8-9999999989698899999999994898798402788886676789889999999999999----99999-9938999 Q ss_pred HHHH Q ss_conf 8999 Q T0586 111 QTAI 114 (125) Q Consensus 111 ~~~~ 114 (125) ++.. T Consensus 141 ee~~ 144 (162) T 3cjn_A 141 QERQ 144 (162) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 51 >3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} Probab=96.26 E-value=0.01 Score=37.78 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=45.5 Q ss_pred CCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 9889999999999976-4989988817887899998589878999999999887916731783368628 Q T0586 12 KPIYSQISDWMKKQMI-TGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~-~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .++.++|+..|.+.=. .|.. .-++ +..+||..+|+||.||.++++.|+++|+|...+|+ ..|.+ T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~--~l~~-t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~~~-i~i~d 210 (220) T 3dv8_A 146 KSLDKRVASFLLEETSIEGTN--ELKI-THETIANHLGSHREVITRMLRYFQVEGLVKLSRGK-ITILD 210 (220) T ss_dssp SCHHHHHHHHHHHHHHHHTSS--EECC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE-EEESC T ss_pred CCHHHHHHHHHHHHHHHCCCC--CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE-EEECC T ss_conf 689899999999999872998--7788-89999999799999999999999988989972999-99889 No 52 >1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Probab=96.26 E-value=0.043 Score=33.71 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=51.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 7688898899999999999764989988817887899998589878999999999887916731783368 Q T0586 7 TFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 7 ~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) -|.+.+||...+...|.+.+..| + |-+++|..|+||++||.+-++...+.|-+.-.+..|.. T Consensus 26 ~~~~GrPLs~dlR~rIV~l~~~G-------~-s~r~iArrf~VS~s~V~ki~~R~retG~~~p~~~gg~r 87 (149) T 1k78_A 26 VFVNGRPLPDVVRQRIVELAHQG-------V-RPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSK 87 (149) T ss_dssp BCCTTSCCCHHHHHHHHHHHHTT-------C-CHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCC T ss_pred CCCCCEECCHHHHHHHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 46299279799999999999969-------9-89999998786889999999999852888878788998 No 53 >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2 Probab=96.25 E-value=0.0068 Score=39.00 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=48.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 88988999999999997649899888---178878999985898789999999998879167317833686288 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGED---KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~---~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) ...+..++|+.+|...- .-+.|+ ++ +..+||..+|+||.||.++++.|+++|+|...+ .+..|.+. T Consensus 160 ~~~~~~~Rl~~~L~~~~---~~~~~~~~l~~-t~~~iA~~lg~sr~tv~r~l~~L~~~giI~~~~-~~i~I~D~ 228 (232) T 1zyb_A 160 PTLDLKSKIIRFFLSHC---EKPQGEKTFKV-KMDDLARCLDDTRLNISKTLNELQDNGLIELHR-KEILIPDA 228 (232) T ss_dssp CCCSHHHHHHHHHHTTC---SSSSSCEEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET-TEEEESCG T ss_pred CCHHHHHHHHHHHHHHH---HCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEECCH T ss_conf 00037778999999986---45155555776-999999897989999999999999889899729-99998677 No 54 >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Probab=96.24 E-value=0.0093 Score=38.11 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=47.8 Q ss_pred CCHHHHHHHHHHHHHHC-CCCCCC-C----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 98899999999999764-989988-8----17887899998589878999999999887916731783368628 Q T0586 12 KPIYSQISDWMKKQMIT-GEWKGE-D----KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~-G~l~~G-~----~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .+.-++++..|...... |...++ . ++ |-.+||..+|+||.||.++++.|+++|+|...+| ...|.+ T Consensus 147 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~l-t~~~LA~~lgisr~tvsr~l~~L~~~g~I~~~~~-~i~I~d 218 (250) T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPL-SQKSIGEITGVHHVTVSRVLASLKRENILDKKKN-KIIVYN 218 (250) T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS-EEEESC T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC-EEEECC T ss_conf 34878999999999998275567886477886-8999998979999999999999998898997499-999878 No 55 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=96.23 E-value=0.018 Score=36.18 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.9 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 87899998589878999999999887916731783 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) +..+||+.+|++++||.+.+..|+..|||++.+.. T Consensus 45 t~~eLa~~~~~~~~tvs~~i~~L~~~gli~r~~~~ 79 (138) T 3bpv_A 45 KQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138) T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC T ss_conf 99999999896988999999999968986861158 No 56 >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} Probab=96.19 E-value=0.0087 Score=38.32 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=45.3 Q ss_pred CCHHHHHHHHHHHHHHCCCC---CCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 98899999999999764989---9888178-8789999858987899999999988791673178336862 Q T0586 12 KPIYSQISDWMKKQMITGEW---KGEDKLP-SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l---~~G~~LP-ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) .+..++++..|........- +.|..+| +-.+||+.+|+||.||.++++.|+++|+|.... +-..|. T Consensus 158 ~~~~~Rla~~L~~l~~~~~~~~~~~~~~i~lt~~~iA~~lg~sr~tv~R~l~~l~~~g~I~~~~-~~i~I~ 227 (230) T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARG-KTVVLY 227 (230) T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEE T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEEE T ss_conf 8998999999999998736677887135177999999897988999999999999789899649-999998 No 57 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=96.16 E-value=0.044 Score=33.66 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=37.5 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHHH Q ss_conf 8878999985898789999999998879167317----833686288078 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKAL 83 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~~ 83 (125) ++..+||+.++++++||.+.++.|+..|||++.+ ++..+|.-.+.. T Consensus 49 ~t~~~La~~~~~~~~tvs~~v~~L~~~g~i~r~~~~~D~R~~~i~lT~~G 98 (138) T 1jgs_A 49 ITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGG 98 (138) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHH T ss_conf 89999999989788689999999986898798446888875688889889 No 58 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=96.13 E-value=0.076 Score=32.10 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=49.2 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE----EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 8878999985898789999999998879167317833----686288078999999999999999999999819999899 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG----SFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) ++..+||+.+++++++|.++++.|+..|||++.+..+ .+|.-.+....... . ...........+ .-+++.+++ T Consensus 59 ~t~~ela~~~~i~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~l~lT~~G~~~~~-~-~~~~~~~~~~~~-~~~l~~ee~ 135 (154) T 2eth_A 59 KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG-E-ILSNFESLLKSV-LEKFSEEDF 135 (154) T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH-H-HHHHHHHHHHHH-HTTCCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHHHHHHH-H-HHHHHHHHHHHH-HHCCCHHHH T ss_conf 5999999998979879999999999888913003666564111015888999999-9-999999999999-958999999 Q ss_pred HHHH Q ss_conf 9999 Q T0586 114 IELL 117 (125) Q Consensus 114 ~~l~ 117 (125) ..++ T Consensus 136 ~~l~ 139 (154) T 2eth_A 136 KVVS 139 (154) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 59 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=96.09 E-value=0.039 Score=34.01 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=34.1 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 8878999985898789999999998879167317833 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) ++..+||+.++++++||.+.++.|+..|||++.+... T Consensus 46 ~t~~ela~~l~i~~~~vs~~v~~L~~~glv~r~~~~~ 82 (145) T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQ 82 (145) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSS T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCC T ss_conf 4999999998978989999999998310020002665 No 60 >1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 Probab=96.05 E-value=0.0092 Score=38.14 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=39.5 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE-EEECCC Q ss_conf 88178878999985898789999999998879167317833-686288 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG-SFVTSD 80 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G-~~V~~~ 80 (125) ++++ |-+++|+..|+|+..+++.++.|...|+|.+.+|.| .+...+ T Consensus 21 ~~~~-ts~~IAe~~~i~~~~l~kIl~~L~kaglv~S~~G~gGg~L~k~ 67 (145) T 1xd7_A 21 DEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKD 67 (145) T ss_dssp CSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSC T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEECCC T ss_conf 9998-9999998869399999999999988790773689989723588 No 61 >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Probab=95.99 E-value=0.018 Score=36.17 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=45.4 Q ss_pred CHHHHHHHHHHHHHHCCCCC-CCC----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 88999999999997649899-888----17887899998589878999999999887916731783368628 Q T0586 13 PIYSQISDWMKKQMITGEWK-GED----KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~-~G~----~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) +..++|+..|........-+ .++ .+ +..+||..+|+||.||.++++.|+++|+|... +++..|.+ T Consensus 136 ~~~~Rl~~~l~~l~~~~~~~~~~~~i~i~~-t~~~lA~~lg~sr~tvsr~l~~L~~~glI~~~-~~~i~I~d 205 (207) T 2oz6_A 136 DVTGRVARTLLDLCQQPDAMTHPDGMQIKI-TRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK-GKTMVVFG 205 (207) T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEEET T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEECC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEEC T ss_conf 888999999999999708877898057177-99999989799999999999999988989977-99999951 No 62 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=95.98 E-value=0.045 Score=33.63 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.5 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 78878999985898789999999998879167317 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) + +..+||+.+|++++||.+++..|++.|||.+.+ T Consensus 35 ~-t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~ 68 (109) T 1sfx_A 35 M-RVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109) T ss_dssp B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred C-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 8-799999997567018999999999599979874 No 63 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=95.94 E-value=0.051 Score=33.24 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=36.9 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC------CCCEEEECCCHHH Q ss_conf 7887899998589878999999999887916731------7833686288078 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK------RGMGSFVTSDKAL 83 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~------~g~G~~V~~~~~~ 83 (125) + +..+||+.++++++||.+.++.|+..|||++. .++-++|.-.+.. T Consensus 56 ~-t~~eLa~~l~i~~~tvs~~l~~L~~~glv~r~~~~~~~D~R~~~l~LT~kG 107 (154) T 2qww_A 56 I-SVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKG 107 (154) T ss_dssp E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHH T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECHHH T ss_conf 8-999999997888004789999998789758862045566653688889889 No 64 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Probab=95.91 E-value=0.09 Score=31.63 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=46.7 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 88789999858987899999999988791673178----33686288078999999999999999999999819999899 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) ++..+||+.++++++||...++.|++.|||++.+. +..++.-.+...... .. ...........+ .-+++.+++ T Consensus 55 ~t~~~La~~~~~~~~~vs~~l~~L~~~g~i~r~~~~~D~R~~~l~lT~~G~~~~-~~-~~~~~~~~~~~~-~~~l~~ee~ 131 (152) T 3bj6_A 55 ATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII-TA-IRADEMAKLALF-SEGFSSVEL 131 (152) T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH-HH-HHHHHHHHHHHH-HTTSCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECHHHHHHH-HH-HHHHHHHHHHHH-HHCCCHHHH T ss_conf 899999999896988999999999977824763267767642135888899999-99-999999999999-828999999 Q ss_pred HH Q ss_conf 99 Q T0586 114 IE 115 (125) Q Consensus 114 ~~ 115 (125) .. T Consensus 132 ~~ 133 (152) T 3bj6_A 132 TA 133 (152) T ss_dssp HH T ss_pred HH T ss_conf 99 No 65 >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Probab=95.91 E-value=0.077 Score=32.06 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=32.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 878999985898789999999998879167317833 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) +..+||+.+|+|++||.+.++.|++.|||++.+... T Consensus 52 t~~~la~~~~~~~~tvs~~i~~L~~~g~I~r~~~~~ 87 (144) T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSK 87 (144) T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC T ss_conf 999999997978868999999999678801313554 No 66 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=95.91 E-value=0.017 Score=36.32 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=34.7 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 78878999985898789999999998879167317833 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) + +..+||+.+++++++|.+.++.|++.|||++.+..+ T Consensus 64 ~-t~~~La~~l~i~~~~vs~~l~~L~~~glI~r~~~~~ 100 (162) T 2fa5_A 64 S-SASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGD 100 (162) T ss_dssp C-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----- T ss_pred C-CHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCC T ss_conf 8-999999997766571999999998289873046788 No 67 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=95.90 E-value=0.053 Score=33.16 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=48.0 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 17887899998589878999999999887916731783----36862880789999999999999999999998199998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) .+ +..+||+.+++++++|.+.+..|++.|||+..+.. .++|.-.+..... .+........+...+ ..+++.+ T Consensus 51 ~~-t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~LT~~G~~~--~~~~~~~~~~~~~~~-~~~ls~e 126 (155) T 1s3j_A 51 SL-KVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIK--FEEVLAGRKAIMARY-LSFLTEE 126 (155) T ss_dssp EE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHH--HHHHHHHHHHHHHHH-HTTSCHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHH--HHHHHHHHHHHHHHH-HHCCCHH T ss_conf 97-9999999989699899999999986242552023367752000248989999--999999999999999-8389999 Q ss_pred HHHH Q ss_conf 9999 Q T0586 112 TAIE 115 (125) Q Consensus 112 ~~~~ 115 (125) ++.. T Consensus 127 e~~~ 130 (155) T 1s3j_A 127 EMLQ 130 (155) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 68 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Probab=95.88 E-value=0.085 Score=31.79 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=48.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 17887899998589878999999999887916731783----36862880789999999999999999999998199998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) .+ |..+||+.+++++++|.+.++.|+..|||.+.+.. -++|.-.+....... . ...........+ .-+++.+ T Consensus 50 ~~-t~~~La~~l~i~~~~vsr~v~~L~~~g~i~r~~~~~D~R~~~l~LT~~G~~~~~-~-~~~~~~~~~~~~-~~~l~~e 125 (146) T 2gxg_A 50 PK-TMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN-K-GIEIYKKLANEV-TGDLSED 125 (146) T ss_dssp CB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH-H-HHHHHHHHHHHH-TTTSCHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHH-H-HHHHHHHHHHHH-HHCCCHH T ss_conf 96-999999998979869999999998789979867788887100116898999999-9-999999999999-8489999 Q ss_pred HHHHH Q ss_conf 99999 Q T0586 112 TAIEL 116 (125) Q Consensus 112 ~~~~l 116 (125) ++..+ T Consensus 126 e~~~l 130 (146) T 2gxg_A 126 EVILV 130 (146) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 69 >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Probab=95.86 E-value=0.015 Score=36.80 Aligned_cols=61 Identities=11% Similarity=0.284 Sum_probs=47.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 98899999999999764989988817887899998589878999999999887916731783368 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) ..++.=+++-.+-.|+. .|..|+ + +..+|++.+|+|++||.+-++.|.+.|+|..++ .|.+ T Consensus 49 ~dvfkaLAdPtRl~IL~-~L~~g~-~-tv~eLa~~lgisqstvS~HL~~L~~aGLV~~~r-~Gr~ 109 (151) T 3f6v_A 49 LDQLEVAAEPTRRRLVQ-LLTSGE-Q-TVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK-DGRF 109 (151) T ss_dssp CCHHHHHTSHHHHHHHH-HGGGCC-E-EHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE-ETTE T ss_pred HHHHHHHCCHHHHHHHH-HHHHCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE-ECCE T ss_conf 99999957999999999-998299-1-799999998878778999875498699357898-7798 No 70 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=95.85 E-value=0.095 Score=31.49 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=38.8 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHH Q ss_conf 8817887899998589878999999999887916731783----368628807 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKA 82 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~ 82 (125) |..+ +..+||+.+|++++||...++.|++.|||++.+.. .++|.-.+. T Consensus 48 ~~~~-t~~ela~~l~i~~~tvs~~i~~L~~~glv~r~~~~~DrR~~~l~LT~~ 99 (147) T 2hr3_A 48 GGDV-TPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSE 99 (147) T ss_dssp TSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHH T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHH T ss_conf 9997-999999998979868999999998579879832588998457578988 No 71 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=95.84 E-value=0.022 Score=35.67 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=37.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHH Q ss_conf 788789999858987899999999988791673178----33686288078 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKAL 83 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~ 83 (125) + +..+||+.+|+|++||.+-++.|++.|||.+.+. +-++++-.+.. T Consensus 31 ~-~~~eLa~~l~is~~~vs~~l~~L~~~GlV~~~~~~~d~r~~~~~LT~~G 80 (100) T 1ub9_A 31 A-PFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG 80 (100) T ss_dssp E-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH T ss_pred C-CHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHH T ss_conf 6-1999999885268744199998642124888876766754202268999 No 72 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=95.78 E-value=0.079 Score=31.99 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=36.7 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHH Q ss_conf 7887899998589878999999999887916731783----368628807 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKA 82 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~ 82 (125) + +..+||+.++++++||.+.++.|++.|||.+.+.. ..+|.-.+. T Consensus 60 ~-~~~ela~~l~i~~~tvs~~l~~L~~~GlV~r~~~~~DrR~~~i~LT~~ 108 (168) T 2nyx_A 60 I-NLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKR 108 (168) T ss_dssp E-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHH T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEECCCCCCEEEEEECHH T ss_conf 8-999999998969989999999996210367643156674258888989 No 73 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=95.72 E-value=0.039 Score=34.04 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=37.9 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHH Q ss_conf 8878999985898789999999998879167317----83368628807 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKA 82 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~ 82 (125) ++..+||+.++++++||.+.++.|++.|||.+.+ ++..+|.-.+. T Consensus 48 ~t~~ela~~~~i~~~~vs~~i~~L~~~gli~~~~~~~DkR~~~i~LT~~ 96 (145) T 2a61_A 48 KRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRK 96 (145) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECHH T ss_conf 8999999882989889999999997246866423478988578788989 No 74 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=95.69 E-value=0.053 Score=33.12 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=45.8 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 1788789999858987899999999988791673178----336862880789999999999999999999998199998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) .+ +..+||+.+++++++|.+++..|+..|||++.+. +...+.-.+..... ... .......+... ..-+++.+ T Consensus 60 ~~-t~~eLa~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~-~~~-~~~~~~~~~~~-~~~~l~~~ 135 (162) T 3k0l_A 60 NL-SNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDK-LNQ-CNQVVQQLEAQ-MLQGVDIN 135 (162) T ss_dssp TC-CHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHH-HHH-HHHHHHHHHHH-HTTTSCHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHH-HHH-HHHHHHHHHHH-HHHCCCHH T ss_conf 98-9999999989688689999999998899797117988885687889889999-999-99999999999-98389999 Q ss_pred HHH Q ss_conf 999 Q T0586 112 TAI 114 (125) Q Consensus 112 ~~~ 114 (125) ++. T Consensus 136 e~~ 138 (162) T 3k0l_A 136 LAF 138 (162) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 75 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Probab=95.58 E-value=0.031 Score=34.68 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=49.7 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 88817887899998589878999999999887916731783----36862880789999999999999999999998199 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGL 108 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (125) .|+.+ +..+||+.+++++++|.+.++.|+..|||++.+.. .++|.-.+...... .. .......+...+ .-++ T Consensus 59 ~~~~~-t~~eLa~~l~i~~~~vs~~v~~Le~~Glv~r~~~~~D~R~~~l~LT~~G~~~~-~~-~~~~~~~~~~~~-~~~l 134 (160) T 3boq_A 59 NPDGL-SMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF-KQ-ASEAHNRILAEL-LRAV 134 (160) T ss_dssp CTTCE-EHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH-HH-HHHHHHHHHHHH-TTTC T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH-HH-HHHHHHHHHHHH-HHCC T ss_conf 89999-89999999896874899999999878997873477778756878898899999-99-999999999999-9679 Q ss_pred CHHHHHHH Q ss_conf 99899999 Q T0586 109 DDQTAIEL 116 (125) Q Consensus 109 ~~~~~~~l 116 (125) +.+++..+ T Consensus 135 ~~ee~~~l 142 (160) T 3boq_A 135 SDQDMVEA 142 (160) T ss_dssp CHHHHHHH T ss_pred CHHHHHHH T ss_conf 99999999 No 76 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Probab=95.58 E-value=0.097 Score=31.41 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=47.6 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 788789999858987899999999988791673178----3368628807899999999999999999999981999989 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQT 112 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (125) + |..+||+.++|+++||.+.+..|+..|||.+.+. +..+|.-.+..... ... .......+... ..-+++.++ T Consensus 44 ~-s~~~la~~l~i~~~~vs~~v~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~~-~~~-~~~~~~~~~~~-~~~~l~~ee 119 (144) T 1lj9_A 44 I-IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNV-YPI-IVRENQHSNQV-ALQGLSEVE 119 (144) T ss_dssp E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHH-HHH-HHHHHHHHHHH-HTTTCCHHH T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHH-HHH-HHHHHHHHHHH-HHHCCCHHH T ss_conf 7-9999999989788589999999998899630679999891144789899999-999-99999999999-985899999 Q ss_pred HHH Q ss_conf 999 Q T0586 113 AIE 115 (125) Q Consensus 113 ~~~ 115 (125) +.. T Consensus 120 ~~~ 122 (144) T 1lj9_A 120 ISQ 122 (144) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 77 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=95.52 E-value=0.061 Score=32.73 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=49.8 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 8878999985898789999999998879167317----833686288078999999999999999999999819999899 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) ++..+||+.++++++||.+.++.|+..|||.+.+ ++..+|.-.+...... .........+...+ .-+++.++. T Consensus 48 ~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~--~~~~~~~~~~~~~~-~~~l~~ee~ 124 (139) T 3bja_A 48 VSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK--KQVDVQYSDFLKEN-CGCFTKEEE 124 (139) T ss_dssp EEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH--HHHHHHHHHHHHHH-HCCSCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHH--HHHHHHHHHHHHHH-HHCCCHHHH T ss_conf 899999999896998999999999868987863699988846878898899999--99999999999999-858999999 Q ss_pred HHHH Q ss_conf 9999 Q T0586 114 IELL 117 (125) Q Consensus 114 ~~l~ 117 (125) ..+. T Consensus 125 ~~l~ 128 (139) T 3bja_A 125 GILE 128 (139) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 78 >3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} Probab=95.50 E-value=0.03 Score=34.77 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=36.9 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHH Q ss_conf 88789999858987899999999988791673178----33686288078 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKAL 83 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~ 83 (125) ++.++||+.++++++||.+.++.|++.|||++.+. +..++.-.+.. T Consensus 46 ~t~~ela~~l~~~~~~vs~~v~~L~~~G~i~r~~~~~D~R~~~i~lT~~G 95 (142) T 3bdd_A 46 LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQA 95 (142) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCHHH T ss_conf 89999999989798799999999997899787118876772122068989 No 79 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=95.48 E-value=0.088 Score=31.69 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=47.9 Q ss_pred CCCCCCCCCCC----CCHH------HHHHHHHHHHHHCCCC-----------CCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 98777776888----9889------9999999999764989-----------9888178878999985898789999999 Q T0586 1 SNAMNPTFHAD----KPIY------SQISDWMKKQMITGEW-----------KGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 1 ~~~M~~~~~~~----~Ply------~qI~~~l~~~I~~G~l-----------~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) +|||+.+-++. ...| .++...+...+..-.+ .....+ +..+||+.+++++.||.+.++ T Consensus 1 ~~~~~~~p~~~~l~~~l~~ll~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l~~~~~~-t~~ela~~~~~~~~~vsr~l~ 79 (155) T 3cdh_A 1 SNAMNDTPDDTFVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDAM-MITRLAKLSLMEQSRMTRIVD 79 (155) T ss_dssp ---------CCHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCSCB-CHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHH T ss_conf 9988899846668889999999999999999999998829799999999999867997-999999895989989999999 Q ss_pred HHHHCCEEEECCCCE Q ss_conf 998879167317833 Q T0586 60 ELERAGYIYAKRGMG 74 (125) Q Consensus 60 ~L~~~G~i~~~~g~G 74 (125) .|++.|||++.+..+ T Consensus 80 ~L~~~gli~r~~~~~ 94 (155) T 3cdh_A 80 QMDARGLVTRVADAK 94 (155) T ss_dssp HHHHTTSEEECC--- T ss_pred HHHHCCCEEEECCCC T ss_conf 999789868711688 No 80 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Probab=95.44 E-value=0.043 Score=33.76 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=40.9 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHH Q ss_conf 98881788789999858987899999999988791673178----3368628807 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKA 82 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~ 82 (125) .+|..+ +..+||+.+++++++|.+.++.|+..|||.+.+. +..+|.-.+. T Consensus 49 ~~~~~~-t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~lT~~ 102 (127) T 2frh_A 49 NKEKEY-YLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQ 102 (127) T ss_dssp TCCSEE-EHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSH T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEECHH T ss_conf 899987-799999997978858999999997212178741588988589898988 No 81 >2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Probab=95.26 E-value=0.062 Score=32.68 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=51.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 688898899999999999764989988817887899998589878999999999887916731783368 Q T0586 8 FHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 8 ~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) |.+.+||-..+...|.+....| + |-+++|+.|+||++||.+-+++..+.|-+.-.+..|.. T Consensus 20 ~~~GrPLs~~lR~rIV~l~~~G-------~-s~r~iArr~~VS~~~V~kil~R~retG~i~p~~~gg~r 80 (159) T 2k27_A 20 FVNGRPLPEVVRQRIVDLAHQG-------V-RPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSK 80 (159) T ss_dssp TSSSCSSCHHHHHHHHHHHHHT-------C-CHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCC T ss_pred CCCCEECCHHHHHHHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 6399279899999999999869-------9-99999999885888999999999854887877788989 No 82 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=95.21 E-value=0.12 Score=30.79 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=45.8 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 88789999858987899999999988791673178----33686288078999999999999999999999819999899 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) ++.++||+.+++++++|.+.++.|++.|||.+.+. +..+|.-.+.... .... .......+... ...+++.+++ T Consensus 57 ~t~~eLa~~l~~~~~~vs~~l~~L~~~g~i~r~~~~~DkR~~~l~LT~~G~~-~~~~-~~~~~~~~~~~-~~~~l~~ee~ 133 (150) T 2rdp_A 57 LTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGER-IIEE-VIEKRQRDLAN-VLESFSDEEI 133 (150) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHH-HHHH-HHHHHHHHHHH-HGGGSCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHH-HHHH-HHHHHHHHHHH-HHHCCCHHHH T ss_conf 5999999998958879999999999889979820478888456578989999-9999-99999999999-9968999999 Q ss_pred HH Q ss_conf 99 Q T0586 114 IE 115 (125) Q Consensus 114 ~~ 115 (125) .. T Consensus 134 ~~ 135 (150) T 2rdp_A 134 VV 135 (150) T ss_dssp HH T ss_pred HH T ss_conf 99 No 83 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=95.21 E-value=0.05 Score=33.30 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=47.1 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 17887899998589878999999999887916731783----36862880789999999999999999999998199998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) .+ +..+||+.+++++.+|.+.+..|++.|||++.+.. ...|.-.+..... ... .......+...+ .-+++.+ T Consensus 67 ~~-s~~~La~~l~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~~-~~~-~~~~~~~~~~~~-~~~ls~~ 142 (161) T 3e6m_A 67 EL-TVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKK-LAE-ISPLINDFHAEL-VGNVDPD 142 (161) T ss_dssp EE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHH-HHH-HHHHHHHHHHHH-HTTCCHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHH-HHH-HHHHHHHHHHHH-HHCCCHH T ss_conf 98-9999999989788799999999983897797336898883100168889999-999-999999999999-9579999 Q ss_pred HHH Q ss_conf 999 Q T0586 112 TAI 114 (125) Q Consensus 112 ~~~ 114 (125) +.. T Consensus 143 e~~ 145 (161) T 3e6m_A 143 KLQ 145 (161) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 84 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=95.17 E-value=0.067 Score=32.48 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=36.3 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHH Q ss_conf 8878999985898789999999998879167317----83368628807 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKA 82 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~ 82 (125) ++..+||+.+++++++|.+.+..|++.|||++.+ ++.++|.-.+. T Consensus 51 ~~~~ela~~l~~~~~~vs~~i~~L~~~Glv~r~~~~~D~R~~~l~lT~~ 99 (142) T 2fbi_A 51 MESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEK 99 (142) T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHH T ss_conf 8999999997989889999999999789979831588888678888989 No 85 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A* Probab=95.13 E-value=0.008 Score=38.54 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.3 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 8817887899998589878999999999887916731 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.++ |..+||+.+|+|++||++-++.|++.|+|... T Consensus 39 d~R~-s~~eiA~~lglS~~tV~~Ri~rL~~~GiI~~~ 74 (171) T 2e1c_A 39 DGKA-PLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171) T ss_dssp CTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 3899-99999999890999999999999848982469 No 86 >3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} Probab=95.12 E-value=0.061 Score=32.76 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=39.8 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEE Q ss_conf 999999976498998881788789999858987899999999988791673178336 Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS 75 (125) Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~ 75 (125) .+..+-.|+.- +..++.+ +..+|++.+|+|++||.+-++.|.+.|+|..++ .|. T Consensus 22 ~~p~Rl~Il~~-L~~~~~~-~~~ela~~l~ls~stvS~HL~~L~~aGlV~~~r-~G~ 75 (99) T 3cuo_A 22 SHPKRLLILCM-LSGSPGT-SAGELTRITGLSASATSQHLARMRDEGLIDSQR-DAQ 75 (99) T ss_dssp CSHHHHHHHHH-HTTCCSE-EHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE-CSS T ss_pred CCHHHHHHHHH-HHCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE-ECC T ss_conf 89999999999-9769994-199999998929878999999999889517998-889 No 87 >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} Probab=95.11 E-value=0.084 Score=31.83 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=52.5 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHH Q ss_conf 8817887899998589878999999999887916731783368628807899999999999999999999-981999989 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITERFLEEA-KSIGLDDQT 112 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 112 (125) |..=|++++|++.+|+....++++++.|...|.|......-+|-...-.........+....-.--+.++ ..+|++..- T Consensus 17 ~~~Pp~v~dla~~l~~~~~~~~~~L~~l~~~G~lv~i~~~~y~~~~~~~~~~~~l~~~~~~~~~itva~fRd~~g~sRK~ 96 (121) T 2pjp_A 17 GDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKL 96 (121) T ss_dssp SSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH T ss_conf 57999799999997929999999999999799489953998873899999999999998767977199999896864999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q T0586 113 AIELLIK 119 (125) Q Consensus 113 ~~~l~~~ 119 (125) .++++.- T Consensus 97 aIplLE~ 103 (121) T 2pjp_A 97 AIQILEY 103 (121) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 88 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Probab=95.10 E-value=0.21 Score=29.22 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=50.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 7887899998589878999999999887916731783----368628807899999999999999999999981999989 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQT 112 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (125) + +..+||+.++++++||.+.++.|+..|||.+.+.. -++|.-.+... ...+........+... ..-+++.++ T Consensus 48 ~-t~~~la~~l~~~~~~vs~~v~~Le~~gli~r~~~~~D~R~~~i~LT~~G~--~~~~~~~~~~~~~~~~-~~~~l~~~e 123 (139) T 3eco_A 48 L-TQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGI--KLVEAFTSIFDEMEQT-LVSQLSEEE 123 (139) T ss_dssp E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHH--HHHHHHHHHHHHHHHH-HHTTSCHHH T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHH--HHHHHHHHHHHHHHHH-HHHCCCHHH T ss_conf 7-99999999896888999999999988896516898888920242788899--9999999999999999-985799999 Q ss_pred HHHHH Q ss_conf 99999 Q T0586 113 AIELL 117 (125) Q Consensus 113 ~~~l~ 117 (125) ...+. T Consensus 124 ~~~l~ 128 (139) T 3eco_A 124 NEQMK 128 (139) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 89 >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Probab=95.07 E-value=0.054 Score=33.10 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=42.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEE Q ss_conf 9999999999976498998881788789999858987899999999988791673178336 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS 75 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~ 75 (125) +.=+.+-.+-.|+. .+..|+ . +..+|++.+|+|++||..-++.|.+.|+|..++ .|. T Consensus 17 ~kaL~~~~Rl~Il~-~L~~~~-~-~v~ela~~l~is~~tvS~HL~~L~~aglV~~~r-~G~ 73 (98) T 3jth_A 17 LKAMANERRLQILC-MLHNQE-L-SVGELCAKLQLSQSALSQHLAWLRRDGLVTTRK-EAQ 73 (98) T ss_dssp HHHHCSHHHHHHHH-HTTTSC-E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-CTT T ss_pred HHHHCCHHHHHHHH-HHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE-ECC T ss_conf 99838999999999-998199-6-799999998929889999999999889536998-878 No 90 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Probab=94.98 E-value=0.073 Score=32.21 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=48.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE----EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 178878999985898789999999998879167317833----6862880789999999999999999999998199998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG----SFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125) .+ +..+||+.++++++|+.+.++.|++.|||++.+... .+|.-.+... .. ..........+... ..-+++.+ T Consensus 57 ~i-t~~eLa~~~~~~~~t~sr~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~-~~-~~~~~~~~~~~~~~-~~~~l~~e 132 (148) T 3jw4_A 57 GI-IQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGA-AL-VEEFNNIFLEVEES-ITKGLTKD 132 (148) T ss_dssp CC-CHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHH-HH-HHHHHHHHHHHHHH-TTTTCCHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECHHHH-HH-HHHHHHHHHHHHHH-HHHCCCHH T ss_conf 97-99999999897885899999999988896315777888860447898899-99-99999999999999-98579999 Q ss_pred HHHHHH Q ss_conf 999999 Q T0586 112 TAIELL 117 (125) Q Consensus 112 ~~~~l~ 117 (125) +...+. T Consensus 133 e~~~l~ 138 (148) T 3jw4_A 133 EQKQLM 138 (148) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 91 >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=94.96 E-value=0.019 Score=36.13 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=34.0 Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 8998881788789999858987899999999988791673 Q T0586 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 30 ~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) .|.-..++ |.++||+.+|+|++||++-+++|++.|+|.. T Consensus 11 ~L~~d~R~-s~~eiA~~lglS~~tv~~Ri~rL~~~GiI~~ 49 (162) T 3i4p_A 11 ILQEDSTL-AVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162) T ss_dssp HHTTCSCS-CHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC T ss_pred HHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 99985899-9999999989199999999999983797463 No 92 >1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Probab=94.95 E-value=0.016 Score=36.60 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=45.5 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHH--HCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 99999764989988817887899998--589878999999999887916731783368628 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVK--LAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~--~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .|...|+...+..|+... =+.|++. +++|..|||-.+..|++.||++.-+-++=+|-. T Consensus 21 ~IL~~iVe~Yi~tgePVG-Sk~L~~~~~l~~SsATIRN~Ma~LE~~G~L~qpHtSaGRIPT 80 (338) T 1stz_A 21 KVLYCIVREYIENKKPVS-SQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGRIPT 80 (338) T ss_dssp HHHHHHHHHHHHHCSCBC-HHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCBEEC T ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 999999999974299567-899998728998869999999999878771589999996683 No 93 >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} Probab=94.93 E-value=0.16 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=33.7 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 817887899998589878999999999887916731783 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) +.+ +..+|++.++++++||.+.+..|++.|||.+.+.. T Consensus 53 ~~~-t~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 90 (150) T 3fm5_A 53 EGV-NQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDP 90 (150) T ss_dssp TCC-CSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC---- T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC T ss_conf 898-99999999788777788999999986985651488 No 94 >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* Probab=94.92 E-value=0.034 Score=34.43 Aligned_cols=68 Identities=10% Similarity=0.188 Sum_probs=47.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH Q ss_conf 988999999999997649899888------1788789999858987899999999988791673178336862880 Q T0586 12 KPIYSQISDWMKKQMITGEWKGED------KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~------~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125) ....++++..|........-.+++ .+ +..+||..+|+||.||.++++.|+++|+|.... +...|.+.+ T Consensus 147 ~~~~~rl~~~L~~~~~~~~~~~~~~~~~~~~l-t~~~la~~~g~sr~tvsr~l~~L~~~g~I~~~~-~~i~I~d~~ 220 (227) T 3d0s_A 147 TDVPGRVAKQLLQLAQRFGTQEGGALRVTHDL-TQEEIAQLVGASRETVNKALADFAHRGWIRLEG-KSVLISDSE 220 (227) T ss_dssp SCHHHHHHHHHHHHHHHHEEEETTEEEEECCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET-TEEEESCHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEEECC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEECCHH T ss_conf 99999999999987876078778861355478-999999997999999999999999889899639-999988899 No 95 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=94.85 E-value=0.11 Score=31.10 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=49.0 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 87899998589878999999999887916731783----36862880789999999999999999999998199998999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAI 114 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (125) +..+||+.++++++||.+.+..|+..|||.+.+.. .++|.-.+.... .... +......+.. ..+++.++.. T Consensus 53 t~~ela~~l~~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~-~~~~-~~~~~~~~~~---~~~l~~~e~~ 127 (142) T 2bv6_A 53 NVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSET-IRPE-LSNASDKVAS---ASSLSQDEVK 127 (142) T ss_dssp EHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH-HHHH-HTTHHHHHHH---HTTCCHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH-HHHH-HHHHHHHHHH---HCCCCHHHHH T ss_conf 999999997988737999999998589889800689888678888989999-9999-9999999998---8097999999 Q ss_pred HHH Q ss_conf 999 Q T0586 115 ELL 117 (125) Q Consensus 115 ~l~ 117 (125) .+. T Consensus 128 ~l~ 130 (142) T 2bv6_A 128 ELN 130 (142) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 96 >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 Probab=94.79 E-value=0.018 Score=36.21 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=34.5 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 817887899998589878999999999887916731783 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) +.+ +..+||+.++++++||.+.++.|+..|||++.+.. T Consensus 85 ~~l-t~~eLa~~l~i~~~tvsr~v~~Le~~GlV~R~~~~ 122 (181) T 2fbk_A 85 EGL-RPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 122 (181) T ss_dssp SCB-CHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-- T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC T ss_conf 993-99999999786876799999999878783444786 No 97 >2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Probab=94.76 E-value=0.12 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.388 Sum_probs=33.0 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 87899998589878999999999887916731783368 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) +..+|++.+|+|++||..-++.|++.|+|..++ .|.+ T Consensus 36 ~v~eLa~~l~~s~~~vS~HL~~L~~aGLV~~~r-~Gr~ 72 (114) T 2oqg_A 36 SASSLATRLPVSRQAIAKHLNALQACGLVESVK-VGRE 72 (114) T ss_dssp CHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE-ETTE T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEE-ECCE T ss_conf 899999998919999999999999889871154-3898 No 98 >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A Probab=94.76 E-value=0.13 Score=30.64 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=40.0 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 99997649899888178878999985898789999999998879167317833686 Q T0586 22 MKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 22 l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) .+-.|+. .|..|+ + +..+|++.+|+|++||.+-++.|...|+|..++ .|.++ T Consensus 47 ~Rl~IL~-~L~~~~-~-~v~eLa~~l~ls~stvS~HL~~L~~aGLV~~~r-~Gr~~ 98 (122) T 1r1t_A 47 NRLRLLS-LLARSE-L-CVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK-QGRHV 98 (122) T ss_dssp HHHHHHH-HHTTCC-B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-ETTEE T ss_pred HHHHHHH-HHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE-ECCEE T ss_conf 9999999-998199-5-699999998919889999999999889137898-75889 No 99 >1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A Probab=94.74 E-value=0.17 Score=29.78 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=64.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHH-HHHHHHH Q ss_conf 988999999999997649899888178878999985898789999999998879167317833686288078-9999999 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL-FDQLKKE 90 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~-~~~~~~~ 90 (125) .+-.+++.+.|...+..+.+.| |+.+++++.+|+....++++++.|..+|.+.... .+.|+...... ....... T Consensus 136 ~~~~~~~~~~i~~~~~~~g~~p----p~~~el~~~l~~~~~~~~~~l~~l~~~g~lv~i~-~~~~~~~~~~~~~~~~l~~ 210 (258) T 1lva_A 136 SETQKKLLKDLEDKYRVSRWQP----PSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN-DEFYWHRQALGEAREVIKN 210 (258) T ss_dssp CHHHHHHHHHHHHHHHHHTTSC----CBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESS-SSBEEEHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CCEEECHHHHHHHHHHHHH T ss_conf 9999999999999998679999----8899999883979999999999999779868827-9889979999999999998 Q ss_pred HHHHHHHHHHHHH-HHCCCCHHHHHHHHHH Q ss_conf 9999999999999-9819999899999999 Q T0586 91 LADAITERFLEEA-KSIGLDDQTAIELLIK 119 (125) Q Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 119 (125) +...-... +.++ ..+|+++.-++.++.- T Consensus 211 ~~~~~~it-v~~frd~~g~SRK~aIplLEy 239 (258) T 1lva_A 211 LASTGPFG-LAEARDALGSSRKYVLPLLEY 239 (258) T ss_dssp HHTTSCBC-HHHHHHHHTCCHHHHHHHHHH T ss_pred HHHCCCCC-HHHHHHHHCCCHHHHHHHHHH T ss_conf 88749875-999999879869999999998 No 100 >2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8 Probab=94.73 E-value=0.0041 Score=40.44 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=45.4 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHH Q ss_conf 976498998881788789999858987899999999988791673178336862880789 Q T0586 25 QMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALF 84 (125) Q Consensus 25 ~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~ 84 (125) .|+. .+-.-+.+ +.+++|+.+|+||.||++-+..+.+.|+|.+.. +|+++++....+ T Consensus 24 ~il~-~lyy~~~l-~q~eIA~~lg~Sr~~V~r~l~~ar~~GiV~i~~-~gm~~t~~g~~~ 80 (345) T 2o0m_A 24 QILR-NIYWMQPI-GRRSLSETMGITERVLRTETDVLKQLNLIEPSK-SGMTLTERGLEV 80 (345) T ss_dssp ------------------------------------------------------------ T ss_pred HHHH-HHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCCCCHHHH T ss_conf 9999-99861898-999999886998889999999999879889963-775111210455 No 101 >1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Probab=94.47 E-value=0.058 Score=32.89 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=51.9 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 7777688898899999999999764989988817887899998589878999999999887916731783368 Q T0586 4 MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 4 M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) +-=-|.+.+||...+...|.+.-.. | . |.+++|.+|+||+++|.+.+++..+.|-+.-.+..|.. T Consensus 8 ~g~~~~~GrpLs~~~R~rIv~l~~~-----G--~-s~~~Iar~l~Vs~~~V~kil~r~~etG~i~p~~~gG~r 72 (128) T 1pdn_C 8 LGGVFINGRPLPNNIRLKIVEMAAD-----G--I-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 72 (128) T ss_dssp TSCEEETTSCCCHHHHHHHHHHHHT-----T--C-CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCC T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHC-----C--C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 8871509858989999999999986-----9--9-99999998896899999999998735987778889999 No 102 >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Probab=94.40 E-value=0.14 Score=30.29 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=36.1 Q ss_pred CCHHHHHHHHCCC-HHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHH Q ss_conf 8878999985898-78999999999887916731783368628807899 Q T0586 38 PSVREMGVKLAVN-PNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFD 85 (125) Q Consensus 38 Pser~La~~~~VS-r~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~ 85 (125) .+..++|+.+|+| |++|.++++.|+++|+|.... +...|.+ ...+. T Consensus 170 ~t~~~iA~~lg~s~r~~vsR~l~~L~~~giI~~~~-~~i~I~D-~~~L~ 216 (238) T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-SCFYVQN-LDYLK 216 (238) T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-TEEEESC-HHHHH T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECC-CEEEECC-HHHHH T ss_conf 67999999958982779999999999889899639-9999968-99999 No 103 >2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Probab=94.40 E-value=0.025 Score=35.25 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=34.0 Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 89988817887899998589878999999999887916731 Q T0586 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 30 ~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .|..+.++ |.++||+.+|+|++||++-++.|++.|+|... T Consensus 25 ~L~~d~R~-s~~eIA~~lglS~~tV~~Ri~rLe~~GvI~~~ 64 (171) T 2ia0_A 25 LLKKDARL-TISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171) T ss_dssp HHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE T ss_pred HHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99984899-99999999890999999999999968974799 No 104 >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 Probab=94.39 E-value=0.025 Score=35.31 Aligned_cols=37 Identities=35% Similarity=0.609 Sum_probs=32.8 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 98881788789999858987899999999988791673 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) ..+.++ |..+||+.+|+|++||+.=++.|++.|+|.. T Consensus 15 ~~n~R~-s~~eia~~~g~s~~tv~~Ri~rL~~~GiI~~ 51 (144) T 2cfx_A 15 KKDSRL-SMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144) T ss_dssp HHCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE T ss_pred HHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCHHHHH T ss_conf 984899-9999999988588899999998720124442 No 105 >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39 Probab=94.27 E-value=0.062 Score=32.68 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=41.4 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 9997649899888178878999985----8987899999999988791673178336862 Q T0586 23 KKQMITGEWKGEDKLPSVREMGVKL----AVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 23 ~~~I~~G~l~~G~~LPser~La~~~----~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) ...|+.=.|..|..+ +.+++.+.+ +.+++||+-.+.+|.+.|+|.+.+...+|+- T Consensus 11 E~~IM~~lW~~~~~~-t~~ei~~~l~~~~~~~~sTV~T~L~rL~~KG~l~~~~~gr~~~Y 69 (138) T 2g9w_A 11 ERAVMDHLWSRTEPQ-TVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRY 69 (138) T ss_dssp HHHHHHHHHTCSSCE-EHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEE T ss_pred HHHHHHHHHCCCCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEE T ss_conf 999999998589992-89999998603479948799999999997896224417982798 No 106 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Probab=94.15 E-value=0.12 Score=30.75 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=38.8 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHH Q ss_conf 88817887899998589878999999999887916731783----368628807 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKA 82 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~ 82 (125) ++..+ +..+||+.+++++++|.+.++.|+..|||.+.+.. -++|.-.+. T Consensus 47 ~~~~~-t~~ela~~l~~~~s~vs~~l~~Le~~g~I~r~~~~~D~R~~~i~lTe~ 99 (250) T 1p4x_A 47 QENTL-PFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEE 99 (250) T ss_dssp SCSEE-EHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHH T ss_pred CCCCC-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHH T ss_conf 99997-899999996888324999999999889988678998998279998989 No 107 >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* Probab=94.13 E-value=0.037 Score=34.19 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=34.1 Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 89988817887899998589878999999999887916731 Q T0586 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 30 ~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .|.-+.++ |..+||+.+|+|++||++-++.|++.|+|... T Consensus 11 ~L~~d~r~-s~~~ia~~~g~s~~tv~~Ri~rL~~~GvI~~~ 50 (150) T 2pn6_A 11 ILQYNAKY-SLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150) T ss_dssp HHTTCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC T ss_pred HHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 99983899-99999999891999999999999968982341 No 108 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=94.11 E-value=0.051 Score=33.27 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=33.9 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 78878999985898789999999998879167317833 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) + +..+||+.++++++||.+.++.|+..|||.+.+... T Consensus 62 ~-t~~~la~~~~~~~~tvs~~v~~L~~~Glv~r~~~~~ 98 (153) T 2pex_A 62 R-SVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAAS 98 (153) T ss_dssp E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--- T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 8-999999998968869999999999889989831699 No 109 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Probab=94.10 E-value=0.065 Score=32.54 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=37.6 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHH Q ss_conf 887899998589878999999999887916731783368628807 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKA 82 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~ 82 (125) ++..+|++.+|+|.+||..-++.|++.|+|+.+. .|+.++.... T Consensus 44 ~~~~el~~~l~is~stvs~HL~~L~~agLV~~~~-~~y~lt~~G~ 87 (96) T 1y0u_A 44 RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGK 87 (96) T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEECTTTC T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CEEEECCCCH T ss_conf 1788999998939889999999998689589708-8799874678 No 110 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=94.06 E-value=0.0071 Score=38.90 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.5 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 7649899888178878999985898789999999 Q T0586 26 MITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 26 I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) +..++ +||.|-|+.+++|+..|||++||.+||+ T Consensus 2 ~~~~~-~p~~k~vTi~diA~~aGVS~sTVSrvLn 34 (355) T 3e3m_A 2 SLDSR-KPGHRPVTMRDVAKAAGVSRMTVSRALK 34 (355) T ss_dssp ---------------------------------- T ss_pred CCCCC-CCCCCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999-9999997699999998869999999968 No 111 >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 Probab=93.90 E-value=0.4 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=36.5 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 817887899998589878999999999887916731783368628 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) ..+ +..++|+.+|++++|+.+-+..|++.||+...+...+.... T Consensus 22 ~~~-~l~eia~~lgl~~st~~RlL~tL~~~g~l~~~~~~~Y~lG~ 65 (249) T 1mkm_A 22 GDV-SVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGY 65 (249) T ss_dssp SCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECT T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEECCC T ss_conf 998-99999998791999999999999977986405775442275 No 112 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=93.87 E-value=0.11 Score=31.12 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=34.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 178878999985898789999999998879167317833 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) .+ |..+||+.++++++||.++++.|++.|||.+.+... T Consensus 62 ~~-t~~ela~~~~~~~stvs~~i~~L~~~glv~r~~~~~ 99 (207) T 2fxa_A 62 GA-SISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLN 99 (207) T ss_dssp SE-EHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-- T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 98-999999998888727999999999789889830888 No 113 >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A Probab=93.85 E-value=0.27 Score=28.48 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=52.9 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC----HHHHHHHHHHHH Q ss_conf 999997649899888178878999985----898789999999998879167317833686288----078999999999 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKL----AVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD----KALFDQLKKELA 92 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~----~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~----~~~~~~~~~~~~ 92 (125) .+...|+. .| .+ |.+++++.+ +.+.+||.-.+++|++.|+|.+.+...+|+-.. +.........+. T Consensus 14 ~VM~~LW~----~~-~~-t~~ei~~~l~~~~~~~~~Tv~tlL~RL~~KG~l~r~~~gr~~~Y~~~v~~~e~~~~~~~~~~ 87 (123) T 1okr_A 14 EVMNIIWM----KK-YA-SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFI 87 (123) T ss_dssp HHHHHHHH----HS-SE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHHHH T ss_pred HHHHHHHC----CC-CC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 99999984----79-96-89999999751359845169999999998898788833881688743789999999999999 Q ss_pred HH----HHHHHHHH-HHHCCCCHHHHHHHH Q ss_conf 99----99999999-998199998999999 Q T0586 93 DA----ITERFLEE-AKSIGLDDQTAIELL 117 (125) Q Consensus 93 ~~----~~~~~~~~-~~~~~~~~~~~~~l~ 117 (125) .. ....++.. +...+++.+++-.|- T Consensus 88 ~~~~~~s~~~l~~~l~~~~~ls~eel~~L~ 117 (123) T 1okr_A 88 NKVYKGGFNSLVLNFVEKEDLSQDEIEELR 117 (123) T ss_dssp HHHSTTCHHHHHHHHHHHSCCCHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 999743799999999983697999999999 No 114 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Probab=93.72 E-value=0.081 Score=31.94 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=34.4 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 8817887899998589878999999999887916731783 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) -+.+ +..+.|++|||||.+|.+.++.-.++|+|.+.-.. T Consensus 19 ~~gl-tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~ 57 (315) T 2w48_A 19 EQDM-TQAQIARELGIYRTTISRLLKRGREQGIVTIAINY 57 (315) T ss_dssp TSCC-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS T ss_pred HCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEC T ss_conf 3499-99999998698999999999999976907999948 No 115 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A Probab=93.68 E-value=0.043 Score=33.76 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=32.2 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 881788789999858987899999999988791673 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) ..++ |.++||+.+|+|++||++-++.|++.|+|.. T Consensus 22 d~R~-s~~eia~~~gls~~tv~~Ri~~L~~~GiI~~ 56 (162) T 2p5v_A 22 NGRL-TNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162) T ss_dssp CTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 3899-9999999989199999999999985792478 No 116 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 Probab=93.57 E-value=0.026 Score=35.20 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=31.9 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 8817887899998589878999999999887916731 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.++ |..+||+.+|+|.+||++-++.|++.|+|... T Consensus 19 n~R~-s~~~iA~~lg~S~~tv~~Ri~~L~~~GiI~~~ 54 (151) T 2cyy_A 19 DGKA-PLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151) T ss_dssp CTTC-CHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 4899-99999999892989999999999733430211 No 117 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=93.45 E-value=0.05 Score=33.29 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=36.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCC Q ss_conf 17887899998589878999999999887916731783----3686288 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSD 80 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~ 80 (125) .+ +..+||+.++++++|+.+++..|+..|||.+.+.. -.+|.-. T Consensus 54 ~~-t~~eLa~~~~i~~~tisr~i~~L~~~glv~r~~~~~D~R~~~i~lT 101 (147) T 1z91_A 54 TL-TVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLT 101 (147) T ss_dssp EE-EHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEEC T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEC T ss_conf 99-9999999979687668899999997899786138888882034789 No 118 >2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} SCOP: a.4.5.72 d.74.4.2 Probab=93.44 E-value=0.15 Score=30.19 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=44.0 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHH Q ss_conf 999999764989988817887899998589878999999999887916731783368628807 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKA 82 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~ 82 (125) +-|+..+..+ +.+ +-+.||+.+++|..|||--+..|++.|+|.. -.+|.+.++.-. T Consensus 19 ~il~~l~~~~-----~Pv-Grr~la~~l~lse~~vR~~~~~L~~~gli~~-~s~G~~~T~~G~ 74 (200) T 2p8t_A 19 DVLAVIFLLK-----EPL-GRKQISERLELGEGSVRTLLRKLSHLDIIRS-KQRGHFLTLKGK 74 (200) T ss_dssp HHHHHHHHTT-----SCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-C--CEEECHHHH T ss_pred HHHHHHHHHC-----CCC-CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-CCCCCEECHHHH T ss_conf 9999999848-----984-7899998829988999999998886888644-589760788699 No 119 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A Probab=93.42 E-value=0.047 Score=33.49 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=32.0 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 8881788789999858987899999999988791673 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) ...++ |..+||+.+|+|++||++=++.|++.|+|.. T Consensus 18 ~d~R~-s~~~ia~~lgls~~tv~~Ri~~L~~~giI~~ 53 (150) T 2w25_A 18 ADGRA-TLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150) T ss_dssp HCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE T ss_pred HCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCHHCC T ss_conf 84899-9999999989099999999999840101024 No 120 >1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 2gxb_A 2acj_A Probab=93.41 E-value=0.26 Score=28.60 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=45.2 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE--EEECC Q ss_conf 999999997649899888178878999985898789999999998879167317833--68628 Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG--SFVTS 79 (125) Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G--~~V~~ 79 (125) +.+.|...+. .+.+|+.+ +-.+||+.+||+...|.++|-.|+.+|.|....+.. ++++. T Consensus 11 ~e~~Il~~L~--~lg~g~~~-tA~~LAk~lgv~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~l~~ 71 (81) T 1qbj_A 11 QEQRILKFLE--ELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81) T ss_dssp HHHHHHHHHH--HHCTTCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC- T ss_pred HHHHHHHHHH--HCCCCCCH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC T ss_conf 8999999998--54899751-0999999969888898999999998788320589899637457 No 121 >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 Probab=93.40 E-value=0.077 Score=32.08 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=35.9 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 999997649899888178878999985898789999999998879167317 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) ..+..|+. .+..|+ + |..+||+.+|||.++|++-++.|++.|+|+.+. T Consensus 15 ~~R~~Il~-~L~~~~-~-~~~ela~~l~is~~~v~~HL~~L~~~Glv~~~~ 62 (202) T 2p4w_A 15 ETRRRILF-LLTKRP-Y-FVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202) T ss_dssp HHHHHHHH-HHHHSC-E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHHHH-HHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999999-998199-8-899999998909989999999999889807997 No 122 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Probab=93.40 E-value=0.16 Score=29.91 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=42.7 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHH Q ss_conf 98881788789999858987899999999988791673178----33686288078 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKAL 83 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~ 83 (125) .+|..+ +..+||+.++++++||.+.++.|+..|||.+.+. +.++|.-.+.. T Consensus 170 ~~~~~i-~~~~la~~l~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~~G 224 (250) T 1p4x_A 170 QNKNIV-LLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQ 224 (250) T ss_dssp TTTCCE-EHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHH T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHH T ss_conf 999967-6999999978885159999999998899897279988870598989889 No 123 >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A Probab=93.31 E-value=0.096 Score=31.45 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=39.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 9999999997649899888178878999985898789999999998879167317 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) =+.+-.+..|+. -|..| .+ |..+||+.+|+|++||+.-++.|+..|+|.... T Consensus 16 ~l~~~~R~~Il~-~L~~~-~~-t~~ela~~l~~s~~~v~~hL~~L~~~glv~~~~ 67 (192) T 1uly_A 16 VMLEDTRRKILK-LLRNK-EM-TISQLSEILGKTPQTIYHHIEKLKEAGLVEVKR 67 (192) T ss_dssp HHHSHHHHHHHH-HHTTC-CB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred HCCCHHHHHHHH-HHHHC-CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 809999999999-99829-96-899999998909999999999998889848998 No 124 >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} Probab=93.30 E-value=0.25 Score=28.72 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=36.6 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 8817887899998589878999999999887916731783368628 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) +..+ |..+||+.+|++++|+.+-++.|+..||++..+...+++.. T Consensus 36 ~~~l-sl~eia~~lgl~kst~~RlL~tL~~~G~l~~~~~g~Y~lG~ 80 (260) T 2o0y_A 36 HPTR-SLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYSLGP 80 (260) T ss_dssp BSSB-CHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECH T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEECCH T ss_conf 9998-99999999791989999999999979978981688566278 No 125 >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Probab=93.28 E-value=0.086 Score=31.77 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=33.8 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 878999985898789999999998879167317833686 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) +..+|++.+|+|++||..-++.|...|+|..++ .|.++ T Consensus 41 ~v~ela~~l~~s~stvS~HL~~L~~aglV~~~r-~G~~~ 78 (106) T 1r1u_A 41 SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR-QGQSM 78 (106) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-ETTEE T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE-ECCEE T ss_conf 699999887658668999999999889148998-87899 No 126 >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} Probab=93.19 E-value=0.14 Score=30.40 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=39.0 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH Q ss_conf 8881788789999858987899999999988791673178336862880 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125) .+..+ +..+||+.+|++++|+.+-++-|.+.|||+.. ++++++...- T Consensus 33 ~~~~l-~l~eia~~lgl~kst~~RlL~tL~~~G~l~r~-~~~Y~lG~~~ 79 (265) T 2ia2_A 33 RNQRR-TLSDVARATDLTRATARRFLLTLVELGYVATD-GSAFWLTPRV 79 (265) T ss_dssp SCSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES-SSEEEECGGG T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEECHHH T ss_conf 79997-99999999794999999999999975986765-9946855357 No 127 >1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Probab=93.16 E-value=0.067 Score=32.49 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=41.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 999999999764989988817887899998589878999999999887916731783368 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) -+.+..+-.|+.--+..|+ + +..+|++.+|+|++||..-++.|.+.|+|..++ .|.+ T Consensus 38 aL~dp~Rl~Il~~L~~~~~-~-~v~ela~~l~is~~~vS~HL~~L~~~GlV~~~r-~Gr~ 94 (122) T 1u2w_A 38 AIADENRAKITYALCQDEE-L-CVCDIANILGVTIANASHHLRTLYKQGVVNFRK-EGKL 94 (122) T ss_dssp HHHSHHHHHHHHHHHHSSC-E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----C T ss_pred HHCCHHHHHHHHHHHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE-ECCE T ss_conf 9589999999999988799-0-699999888457007999999999889258999-8889 No 128 >2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 Probab=93.09 E-value=0.23 Score=28.97 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=46.6 Q ss_pred HCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC--CCEEEECCCHHHH Q ss_conf 649899888178878999985898789999999998879167317--8336862880789 Q T0586 27 ITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR--GMGSFVTSDKALF 84 (125) Q Consensus 27 ~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~--g~G~~V~~~~~~~ 84 (125) ...+|...+-+---..+|++.||.|+.+-.|++.|+.-|+|+++. =+|||+.--...+ T Consensus 33 If~eL~g~EG~lvASkIADrvgITRSVIVNALRKlESAGvIESRSlGMKGTyIkvlN~~~ 92 (102) T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKF 92 (102) T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHH T ss_pred HHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCHHH T ss_conf 999728965435308666762972899999998764346134115777713776405889 No 129 >2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} Probab=92.97 E-value=0.05 Score=33.31 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=32.2 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 8881788789999858987899999999988791673 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) .+.++ |.++||+.+|+|++||++=++.|++.|+|.. T Consensus 20 ~d~R~-s~~~iA~~lgls~~tv~~Ri~rL~~~GvI~~ 55 (151) T 2dbb_A 20 ENSRL-TYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151) T ss_dssp HCTTC-CHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE T ss_pred HCCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE T ss_conf 85999-9999999989699999999999840552103 No 130 >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Probab=92.96 E-value=0.053 Score=33.12 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.6 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 9888178878999985898789999999 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) .-+.+.|+.+++|+..|||.+||.+||+ T Consensus 4 ~~~~~~~Tl~diA~~agVS~~TVSr~Ln 31 (366) T 3h5t_A 4 GRKQQYGTLASIAAKLGISRTTVSNAYN 31 (366) T ss_dssp ---CCTTHHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 8899976299999998849999999858 No 131 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Probab=92.94 E-value=0.086 Score=31.76 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=31.5 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE Q ss_conf 88178878999985898789999999998879167 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~ 68 (125) ..+. |..+||+.+|+|++||++-++.|++.|+|. T Consensus 20 d~R~-s~~eia~~~g~s~~tv~~Ri~rL~~~GiI~ 53 (152) T 2cg4_A 20 NART-AYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152) T ss_dssp CTTS-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEE T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCCCEE T ss_conf 5899-999999998877589999999971125210 No 132 >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Probab=92.85 E-value=0.17 Score=29.88 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=33.7 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 7887899998589878999999999887916731783368 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) + +..+||+.+|+|++||.+-++.|.+.|+|..++ .|.+ T Consensus 32 ~-~v~ela~~l~~s~~~vs~HL~~L~~aGlV~~~r-~Gr~ 69 (118) T 3f6o_A 32 A-TVSELAKPFDMALPSFMKHIHFLEDSGWIRTHK-QGRV 69 (118) T ss_dssp E-EHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEE-ETTE T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE-ECCE T ss_conf 7-777779886969999999998899889862677-7888 No 133 >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A Probab=92.72 E-value=0.6 Score=26.21 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=51.5 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCEEEECCCCEEEECC----CHHHHHHHHHHH Q ss_conf 9999997649899888178878999985----89878999999999887916731783368628----807899999999 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVKL----AVNPNTVSRAYQELERAGYIYAKRGMGSFVTS----DKALFDQLKKEL 91 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~~----~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~----~~~~~~~~~~~~ 91 (125) ..+...|+. -| .+ +.+++.+.+ +.+++||+--+.+|.+.|+|.+......|+-. ..........++ T Consensus 13 ~~VM~~lW~----~~-~~-t~~eI~~~l~~~~~~~~sTv~T~L~rL~~Kg~l~~~~~gr~~~Y~~~vs~~e~~~~~~~~~ 86 (126) T 1sd4_A 13 WDVMNIIWD----KK-SV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTF 86 (126) T ss_dssp HHHHHHHHH----SS-SE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHHHHHHHHHHHH T ss_pred HHHHHHHHC----CC-CC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 999999984----89-97-8999999852436984877999999998450404542688579875579999999999999 Q ss_pred HHH----HHHHHHHHH-HHCCCCHHHHHHH Q ss_conf 999----999999999-9819999899999 Q T0586 92 ADA----ITERFLEEA-KSIGLDDQTAIEL 116 (125) Q Consensus 92 ~~~----~~~~~~~~~-~~~~~~~~~~~~l 116 (125) ... ....++..+ ..-.++.+++.+| T Consensus 87 ~~~~~~gs~~~l~~~~~~~~~ls~~el~~L 116 (126) T 1sd4_A 87 LNKLYGGDMKSLVLNFAKNEELNNKEIEEL 116 (126) T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHH T ss_conf 999958999999999984679999999999 No 134 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Probab=92.39 E-value=0.1 Score=31.31 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=31.7 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 881788789999858987899999999988791673 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) +.++ |..+||+.+|+|++||++-++.|++.|+|.. T Consensus 16 ~~r~-s~~~ia~~~gls~~~v~~Ri~~L~~~GvI~~ 50 (141) T 1i1g_A 16 DART-PFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141) T ss_dssp CTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC T ss_conf 5898-9999999989099999999999860696124 No 135 >2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} Probab=92.37 E-value=0.056 Score=32.97 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEE Q ss_conf 8789999858987899999999988791673178336 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS 75 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~ 75 (125) +..+|++.+|+|++||.+-++.|++.|+|..++ .|. T Consensus 36 ~v~ela~~l~is~stvS~HL~~L~~aGlV~~~r-~G~ 71 (118) T 2jsc_A 36 YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY-EGR 71 (118) T ss_dssp STTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE-CSS T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE-ECC T ss_conf 899999998919999999999999889627999-889 No 136 >1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Probab=92.35 E-value=0.019 Score=36.11 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=41.3 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 88999999999997649899888178-878999985898789999999998879167317833686 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLP-SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LP-ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) +.-++|+..|......+ .+-.+| +..++|+.+|+||.||.++++.|+++|+|....| ...| T Consensus 142 ~~~~rl~~~L~~~~~~~---~~~~~~~t~~~iA~~~g~sr~tvsR~l~~L~~~glI~~~~~-~i~I 203 (213) T 1o5l_A 142 TLREKLMNFLVRHMNEK---RELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGR-RIKV 203 (213) T ss_dssp ------------------------------------------------------------------ T ss_pred CHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC-EEEE T ss_conf 59999999999732226---86456877999999979899999999999997898998699-9999 No 137 >3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Mycobacterium tuberculosis} Probab=91.94 E-value=0.15 Score=30.18 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=36.7 Q ss_pred CCCCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 988817--887899998589878999999999887916731783368628 Q T0586 32 KGEDKL--PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 32 ~~G~~L--Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) +.|..+ .+.-.+++.||||...||-|+.+|..+|+|+... .|+.... T Consensus 16 ~~g~~i~~~~Li~l~~~~Gi~~~avRtAlsRL~~~GwL~~~r-~Gr~~~~ 64 (247) T 3kfw_X 16 AHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSA-DGYRLSD 64 (247) T ss_dssp TTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEET-TEEEECH T ss_pred CCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCC-CCCCCCH T ss_conf 788723099999999983998147999999998759755157-7531257 No 138 >3l09_A Putative transcriptional regulator; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.81A {Jannaschia SP} Probab=91.65 E-value=0.16 Score=30.05 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=38.3 Q ss_pred CCCCCCC--CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-C--CEEEECC Q ss_conf 9888178--878999985898789999999998879167317-8--3368628 Q T0586 32 KGEDKLP--SVREMGVKLAVNPNTVSRAYQELERAGYIYAKR-G--MGSFVTS 79 (125) Q Consensus 32 ~~G~~LP--ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~-g--~G~~V~~ 79 (125) +.|..++ +.-+|++.||||-..||-|+.+|..+|+++..+ | ++|..++ T Consensus 38 ~~gg~i~~~~Li~ll~~lGi~~~avRtAlsRL~~~GwL~~~r~GR~s~Y~Lt~ 90 (266) T 3l09_A 38 DGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266) T ss_dssp TTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH T ss_pred CCCCEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEECH T ss_conf 68981529999999998499904799999999871864532036633045778 No 139 >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} Probab=91.41 E-value=0.61 Score=26.18 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=40.4 Q ss_pred CCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECC--CCEEEECCCHHHHHHHHHH Q ss_conf 88178878999985-898789999999998879167317--8336862880789999999 Q T0586 34 EDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKR--GMGSFVTSDKALFDQLKKE 90 (125) Q Consensus 34 G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~--g~G~~V~~~~~~~~~~~~~ 90 (125) |.+-+...+|...+ |||..+..+.++.|++.|+|++.. +..|.+++....+.+.... T Consensus 39 g~~r~~F~el~~~l~gIS~~~Ls~rLk~L~~~glI~r~~p~~~~Y~LT~~G~~L~~il~~ 98 (111) T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMP 98 (111) T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEECCCHHHHHHHHHH T ss_conf 898777999997741347889999998999789788677998558659488889999999 No 140 >2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84 Probab=91.21 E-value=0.37 Score=27.56 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=45.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 99999999999764989988817887899998589--------------8789999999998879167317833686288 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV--------------NPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~V--------------Sr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) |.+-+.-++.-=+.| .+ ++..|+..||= |.+.+|.++++|+..|+|+..++.|-.+++. T Consensus 52 Y~R~ASilRkiY~~g------pv-GV~~Lr~~YGg~k~rG~~P~h~~~asg~iiR~~lQqLE~~g~vek~~~~GR~lT~~ 124 (150) T 2v7f_A 52 YYRVASILRRVYLDG------PV-GIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPK 124 (150) T ss_dssp HHHHHHHHHHHHHHC------SB-CHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHH T ss_pred HHHHHHHHHHHHHCC------CC-CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEECHH T ss_conf 998899999998628------96-38899999788878999998777776289999999998688867769998477887 Q ss_pred HHHH Q ss_conf 0789 Q T0586 81 KALF 84 (125) Q Consensus 81 ~~~~ 84 (125) -... T Consensus 125 Gq~~ 128 (150) T 2v7f_A 125 GRSF 128 (150) T ss_dssp HHHH T ss_pred HHHH T ss_conf 8999 No 141 >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Probab=91.05 E-value=0.45 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=38.1 Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 899888178878999985898789999999998879167317833 Q T0586 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 30 ~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) ...+|... +-.+||+.+|++...|.+++-.|+.+|.|....+.. T Consensus 25 ~~g~g~~~-tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~~P 68 (77) T 1qgp_A 25 ELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77) T ss_dssp HHCSSSCE-EHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS T ss_pred HCCCCCCH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC T ss_conf 65898760-299999996988888899999999878953069989 No 142 >2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A* Probab=90.82 E-value=0.16 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=30.8 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 8878999985898789999999998879167317 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) -+..++++.+|||+.|++++++.|.+.|+|+... T Consensus 312 ~t~~~~~~~~~vS~~Ta~~~l~~L~~~GiL~~~~ 345 (373) T 2qc0_A 312 CRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373) T ss_dssp EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC- T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 2499999986979999999999999789879837 No 143 >2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} Probab=90.44 E-value=1 Score=24.64 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=63.0 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC------CEEEECCCCEEEE Q ss_conf 7777688898899999999999764989988817887899998589878999999999887------9167317833686 Q T0586 4 MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA------GYIYAKRGMGSFV 77 (125) Q Consensus 4 M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~------G~i~~~~g~G~~V 77 (125) |.++-..... .+++...|...+.. .|+.| |.++|++.++++...|++++..|..+ |+....-+.|+.. T Consensus 3 M~~~~~~~m~-~~el~~iiEAlLF~----s~~pv-s~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~gl~l~~~~ggy~l 76 (219) T 2z99_A 3 MDIAEPAELD-ADELKRVLEALLLV----IDTPV-TADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRM 76 (219) T ss_dssp ------CCCC-HHHHHHHHHHHHHH----CSSCB-CHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEE T ss_pred CCCCCCCCCC-HHHHHHHHHHHHHH----CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEE T ss_conf 8877876689-99999999999997----27998-999999886889899999999999997369985799998999999 Q ss_pred CCCHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 288078999999--------999999999999999819999899 Q T0586 78 TSDKALFDQLKK--------ELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 78 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) ............ .+-...++.+..-+....++..++ T Consensus 77 ~t~~e~~~~v~~~~~~~~~~~LS~aaLETLAIIAY~QPITr~eI 120 (219) T 2z99_A 77 YTRARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARV 120 (219) T ss_dssp EECGGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHH T ss_pred EECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH T ss_conf 98299999999996456667769999999999997498379999 No 144 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=90.08 E-value=0.17 Score=29.90 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=31.4 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 81788789999858987899999999988791673 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) ..+ |-.+||+..|+|++||.+.+..|.++|+|.- T Consensus 29 g~~-SR~ela~~~gLs~~Tvs~iv~~L~~~glv~e 62 (406) T 1z6r_A 29 GPV-SRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406) T ss_dssp CSC-CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 991-8999998879599999999999998898896 No 145 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=89.57 E-value=0.15 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=32.2 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 881788789999858987899999999988791673 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) ...+ |-.+||+..|+|++||...+..|.++|+|.- T Consensus 51 ~g~i-SR~eLa~~tgLS~~TVs~iv~~L~~~gli~e 85 (429) T 1z05_A 51 KGPI-SRIDLSKESELAPASITKITRELIDAHLIHE 85 (429) T ss_dssp HCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 5991-8999998879699999999999998896898 No 146 >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=89.20 E-value=0.35 Score=27.78 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=34.7 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 9999764989988817887899998589878999999999887916731 Q T0586 22 MKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 22 l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.+.|..| .+ |-.+||+..|+|++||.+.+..|.++|+|... T Consensus 25 il~~l~~g------pi-SR~eLa~~tgLs~~tvs~iv~~L~~~gli~e~ 66 (380) T 2hoe_A 25 ILKRIMKS------PV-SRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 66 (380) T ss_dssp SHHHHHHS------CB-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE T ss_pred HHHHHHCC------CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99999809------94-99999988796999999999999988988981 No 147 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=88.68 E-value=0.2 Score=29.31 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.6 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 88178878999985898789999999 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) .-|-|+.+++|+..|||.+||.+|++ T Consensus 7 ~~k~vTikdIA~~aGVS~~TVSraLn 32 (344) T 3kjx_A 7 TKRPLTLRDVSEASGVSEMTVSRVLR 32 (344) T ss_dssp ---CCCHHHHHHHHCCCSHHHHHHHT T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99997699999998959999999978 No 148 >2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71 Probab=88.40 E-value=1.3 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=44.3 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 999999999764989988817887899998589878999999999887916731783 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) .++.-|...-....=.+|... |...||++.+|-.+|.|+.+..|.+.|++.+.-.. T Consensus 17 ~lvavL~~L~~A~~e~~g~~w-SLAkl~KRa~vpMStLRR~LT~L~~aGLv~t~~~e 72 (96) T 2obp_A 17 AIVEVLLVLREAGIENGATPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEA 72 (96) T ss_dssp HHHHHHHHHHHHTSSTTCCCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT T ss_pred HHHHHHHHHHHHHHCCCCCCC-CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 999999999998523799954-39999877089679999999998507815887635 No 149 >2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} Probab=88.37 E-value=1.5 Score=23.65 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=36.7 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 88178878999985898789999999998879167317833686288 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) +..+ +..+||+.+|++++|+.+-++.|++.||+.... ..+++... T Consensus 27 ~~~~-t~~eia~~l~l~~st~~rlL~tL~~~g~l~~~~-~~Y~lG~~ 71 (257) T 2g7u_A 27 RPNP-TLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRWSLTPR 71 (257) T ss_dssp CSSC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEECGG T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCC-CEEEECCH T ss_conf 9998-999999997929999999999999709888059-95884604 No 150 >2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Probab=88.07 E-value=1.3 Score=24.02 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 99999999999764989988817887899998589878999999999887916731783368 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) -++|-+.|.+ .|+.+ +-.++|+.+||-+-.|.+|+..|..+|-|.+-. +.++ T Consensus 12 eqkVL~~L~e--------aG~p~-~a~~iA~~~gv~KKeVnk~l~~LKkegki~spk-rc~W 63 (67) T 2heo_A 12 EQKILQVLSD--------DGGPV-AIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPS-PKYW 63 (67) T ss_dssp HHHHHHHHHH--------HCSCE-EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEE-TTEE T ss_pred HHHHHHHHHH--------CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC-CCCC T ss_conf 9999999997--------68978-799999998878899999999998776805898-8620 No 151 >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 Probab=87.94 E-value=1.2 Score=24.26 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=39.3 Q ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE------EEECCCHHHHHHHHHH Q ss_conf 878999985-898789999999998879167317833------6862880789999999 Q T0586 39 SVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG------SFVTSDKALFDQLKKE 90 (125) Q Consensus 39 ser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G------~~V~~~~~~~~~~~~~ 90 (125) .-.+|.+.+ |||..+..+.++.|++.|+|++..-.. |..++....+.+.... T Consensus 29 rF~el~~~l~gIS~~~Ls~rLk~L~~~GLv~R~~~~~~p~rveY~LT~~G~~L~pvl~~ 87 (107) T 2hzt_A 29 RTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDM 87 (107) T ss_dssp CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH T ss_conf 69999977625588899999999998888202036999981577668348899999999 No 152 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Probab=87.88 E-value=0.34 Score=27.87 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=34.7 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 888178878999985898789999999998879167317833 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) .+..+ +..++++.+++|..|+++++..|.+.|+|+...+.| T Consensus 441 ~~~~i-t~~ela~~l~~s~~~v~~~L~~L~~~glie~~~~~~ 481 (583) T 3lmm_A 441 QRPFI-TIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIA 481 (583) T ss_dssp HSSSB-CHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEE T ss_pred HCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCC T ss_conf 66656-799999885899999999999999779824146666 No 153 >3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} Probab=87.55 E-value=1.6 Score=23.33 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=29.5 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--CCCCEEEECC Q ss_conf 788789999858987899999999988791673--1783368628 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTS 79 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~--~~g~G~~V~~ 79 (125) ..++.++|+.+|||..|+| .-+..|+|.- +...|+.+-. T Consensus 4 ~Y~Igeva~~~gvs~~TLR----yYE~~GLl~p~~r~~ngyR~Yt 44 (146) T 3hh0_A 4 AWLISEFASVGDVTVRALR----YYDKINLLKPSDYTEGGHRLYT 44 (146) T ss_dssp CBCHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTSCEEBC T ss_pred CCCHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCEEEC T ss_conf 7749999999894989999----9998789897620899954410 No 154 >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A Probab=87.41 E-value=0.1 Score=31.31 Aligned_cols=54 Identities=11% Similarity=0.305 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 899999999999764989988817887899998589878999999999887916731 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) ++.-+.+..+..|+. .|..|. + +..+|++.+|+|.+||.+-++.|+..|+|... T Consensus 5 ~~~~L~~~~R~~Il~-~L~~~~-~-~~~ela~~~~~s~~~vs~HL~~L~~~glv~~~ 58 (232) T 2qlz_A 5 LFYILGNKVRRDLLS-HLTCME-C-YFSLLSSKVSVSSTAVAKHLKIMEREGVLQSY 58 (232) T ss_dssp HHHHHTSHHHHHHHH-HHTTTT-T-CSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEE T ss_pred HHHHCCCHHHHHHHH-HHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 998838999999999-998199-9-79999999891999999999999988984998 No 155 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=87.41 E-value=0.31 Score=28.12 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=46.7 Q ss_pred CCCCCCCC--------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 98777776--------88898899999999999764989988817887899998589878999999999887916731 Q T0586 1 SNAMNPTF--------HADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 1 ~~~M~~~~--------~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) ||+|...+ ++=+|-=.+|+++|.+....- ...|.++||+..+||.+||-+-.+.|--.||-+-+ T Consensus 1 ~~~~~~~~l~~i~~~~~~Lt~sEk~Ia~yil~~~~~v------~~~si~~lA~~~~vS~sTI~Rf~kkLG~~Gf~efk 72 (111) T 2o3f_A 1 SNAMATGGLAIIQSMXHXLPPSERKLADYILAHPHXA------IESTVNEISALANSSDAAVIRLCXSLGLKGFQDLX 72 (111) T ss_dssp ---CCCCHHHHHHHHGGGSCHHHHHHHHHHHHCHHHH------HTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHH------HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 9841154999999760538999999999999693476------44689999989798988999999994779899999 No 156 >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} Probab=87.38 E-value=0.42 Score=27.24 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=32.2 Q ss_pred CCCHHHHHHHHC----CCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 788789999858----98789999999998879167317833686 Q T0586 37 LPSVREMGVKLA----VNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 37 LPser~La~~~~----VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) + +.+++.+.++ ++++||.--+.+|++.|+|.+......|+ T Consensus 50 ~-t~~eI~~~L~~~~~~~~sTv~TlL~RL~~KG~v~r~k~Gr~~~ 93 (99) T 2k4b_A 50 A-RVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFV 93 (99) T ss_dssp E-EHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEE T ss_pred C-CHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEE T ss_conf 5-8999999851244877334999999999889879995299089 No 157 >2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A* Probab=87.03 E-value=1.8 Score=23.14 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=49.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 688898899999999999764989988817887899998589878999999999887916731783368 Q T0586 8 FHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 8 ~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) .++.-|+|.+..+.+... .+. |..-|...|+|..+-+-+-+..|+..|+|.-..|.|.. T Consensus 5 ~~~~D~l~~~a~~~V~~~---------~~a-S~S~lQR~~~IGynRAariid~LE~~GiVsp~~g~~~R 63 (73) T 2ve8_A 5 GSEDDPLYDEAVRFVTES---------RRA-SISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSR 63 (73) T ss_dssp --CCCTTHHHHHHHHHHH---------CCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTSCC T ss_pred CCCCCHHHHHHHHHHHHH---------CCC-CHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 765548999999999981---------864-48999999711616999999999997687887789888 No 158 >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Probab=87.02 E-value=0.092 Score=31.57 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=22.9 Q ss_pred CCCC-CCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 8817-88789999858987899999999 Q T0586 34 EDKL-PSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 34 G~~L-Pser~La~~~~VSr~TVr~Al~~ 60 (125) .+|. |+.+++|+..|||++||.+||+. T Consensus 4 ~~k~r~Ti~dIA~~aGVS~~TVSr~Ln~ 31 (348) T 3bil_A 4 TEKFRPTLKDVARQAGVSIATASRALAD 31 (348) T ss_dssp ---------------------------- T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 7899973999999988599999999789 No 159 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=86.82 E-value=0.096 Score=31.45 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 788789999858987899999999 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~ 60 (125) ++|.+++|+.+|||++||.+|++. T Consensus 2 Mati~diA~~agVS~~TVsraLn~ 25 (330) T 3ctp_A 2 LANIREIAKRAGISIATVSRHLNN 25 (330) T ss_dssp ------------------------ T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 998999999989499999999689 No 160 >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} Probab=86.38 E-value=1.8 Score=23.07 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=33.0 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 8178878999985898789999999998879167317833686 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) ..+ +..+|++.+|+|++||..-++.|. .|+|..++ .|.++ T Consensus 40 ~~~-~v~ela~~l~~s~stvS~HL~~L~-aglV~~~r-~G~~~ 79 (99) T 2zkz_A 40 KAL-NVTQIIQILKLPQSTVSQHLCKMR-GKVLKRNR-QGLEI 79 (99) T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHB-TTTBEEEE-ETTEE T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHH-HCCCEEEE-ECCEE T ss_conf 990-599999998858768999999998-29734898-75889 No 161 >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Probab=86.35 E-value=0.77 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.6 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHH----HHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 99999976498998881788789999----85898789999999998879167317833686 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGV----KLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~----~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) ..+.+.|+. -|. + +.+++.+ ..+.+.+||+--+.+|.+.|+|........|+ T Consensus 12 ~~VM~~lW~----~~~-~-t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg~l~~~~~gr~~~ 67 (82) T 1p6r_A 12 LEVMKVIWK----HSS-I-NTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFV 67 (82) T ss_dssp HHHHHHHHT----SSS-E-EHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE T ss_pred HHHHHHHHC----CCC-C-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEE T ss_conf 999999981----799-7-8999999860236972857999999999889868872598389 No 162 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Probab=86.22 E-value=0.11 Score=31.12 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=35.5 Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 899888178878999985898789999999998879167317833 Q T0586 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 30 ~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) .+..+..+ |-+++++.+|+|+.+|++.++.|.++|+|... |+| T Consensus 524 ~l~~~g~i-t~~eiae~lgls~~~v~~~L~~L~~~G~I~~~-G~g 566 (583) T 3lmm_A 524 WLSEVGDL-ATSDLMAMCGVSRGTAKACVDGLVDEERVVAV-GGG 566 (583) T ss_dssp --------------------------------------------- T ss_pred HHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCC T ss_conf 99977993-99999999794999999999999988977985-678 No 163 >3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Probab=86.03 E-value=2 Score=22.80 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=29.1 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--CCCCEEEECCC Q ss_conf 8789999858987899999999988791673--17833686288 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTSD 80 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~--~~g~G~~V~~~ 80 (125) |..++|+.+|||..|+|- -+..|+|.- +...|+++-.. T Consensus 4 tI~evA~~~Gvs~~tLRy----Ye~~GLl~p~~r~~~gyR~Y~~ 43 (142) T 3gp4_A 4 NIKEASEKSGVSADTIRY----YERIGLIPPIHRNESGVRKFGA 43 (142) T ss_dssp CHHHHHHHHTSCHHHHHH----HHHHTSSCCCCBCTTSCBCBCH T ss_pred CHHHHHHHHCCCHHHHHH----HHHCCCCCCCCCCCCCCCCCHH T ss_conf 399999998959999999----9983686975115799641329 No 164 >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Probab=85.58 E-value=0.51 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 878999985898789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125) +.+++|+..|||++||.+||+ T Consensus 2 Ti~dIA~~aGVS~~TVSrvLn 22 (340) T 1qpz_A 2 TIKDVAKRANVSTTTVSHVIN 22 (340) T ss_dssp CHHHHHHHHTSCHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHC T ss_conf 689999998959999999968 No 165 >3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583} Probab=85.34 E-value=1 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.3 Q ss_pred HCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 589878999999999887916731 Q T0586 47 LAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 47 ~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.+|..|+-.+++.|+++|+|... T Consensus 42 ~~~s~gtlY~~L~rLe~~G~I~~~ 65 (116) T 3hhh_A 42 TEIVEGTVYTILLRLEKNQWVIAE 65 (116) T ss_dssp SSCCHHHHHHHHHHHHHTTSEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 788976649999999977967999 No 166 >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69 Probab=85.31 E-value=1.1 Score=24.56 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=46.0 Q ss_pred CCCCCCCCCC-CCCHHHHHHHHH----HHHHHCCCCCCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 9877777688-898899999999----9997649899888178878999985-898789999999998879167317833 Q T0586 1 SNAMNPTFHA-DKPIYSQISDWM----KKQMITGEWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 1 ~~~M~~~~~~-~~Ply~qI~~~l----~~~I~~G~l~~G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) ||+|+-+..+ +-|+-. ..+.| .-.|+. .+..|.. .-.+|...+ |||+.+..+.++.|++.|+|++..-.+ T Consensus 1 sn~~~~~~~~~~Cpi~~-~l~~lg~kW~l~Il~-~L~~g~~--rF~el~~~l~gIs~~~Ls~rLk~L~~~glv~r~~~~~ 76 (107) T 2fsw_A 1 SNAMERKISDEECPVRK-SMQIFAGKWTLLIIF-QINRRII--RYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPE 76 (107) T ss_dssp -----CCCCSTTCHHHH-HHHHHTSSSHHHHHH-HHTTSCE--EHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECS T ss_pred CCCCCCCCCCCCCCHHH-HHHHHCCCCHHHHHH-HHHCCCC--CHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCC T ss_conf 94022577889999999-999985988999999-9815998--7999986731238789999999999888814456799 No 167 >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 Probab=84.12 E-value=1.7 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=33.2 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 9999764989988817887899998589878999999999887916731 Q T0586 22 MKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 22 l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) |...+..|.. -..+|.+.+|+|+.+..+-++.|++.|+|+.. T Consensus 29 IL~~l~~g~~-------RF~eL~~~lgiS~~vLs~rL~~L~~~gLv~r~ 70 (146) T 2f2e_A 29 IVRDAFEGLT-------RFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 70 (146) T ss_dssp HHHHHHTTCC-------SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE T ss_pred HHHHHHCCCC-------CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 9999974997-------79999988487899999999999988983775 No 168 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=83.76 E-value=0.56 Score=26.43 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.1 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 878999985898789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125) +.+++|+..|||++||.+|++ T Consensus 4 TikdIA~~aGVS~~TVSr~Ln 24 (332) T 2hsg_A 4 TIYDVAREASVSMATVSRVVN 24 (332) T ss_dssp CHHHHHHHTTSCHHHHHHHHT T ss_pred CHHHHHHHHCCCHHHHHHHHC T ss_conf 799999998969999999977 No 169 >1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A Probab=83.66 E-value=0.7 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=19.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 878999985898789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125) +.+++|+..|||.+||.+||+ T Consensus 2 Ti~dIA~~aGVS~sTVSrvLn 22 (65) T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65) T ss_dssp CHHHHHHHHTSCHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHC T ss_conf 899999998939999999977 No 170 >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69 Probab=83.53 E-value=1.8 Score=23.13 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=48.4 Q ss_pred CCCCCCCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 987777768889889999-----99999997649899888178878999985-898789999999998879167317833 Q T0586 1 SNAMNPTFHADKPIYSQI-----SDWMKKQMITGEWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI-----~~~l~~~I~~G~l~~G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) ||||..+-+...-....+ .-.|...+.. |.+ .-.+|...+ |||+.+..+-++.|++.|+|++..... T Consensus 1 sn~~~~~~~c~i~~al~ilg~KW~~~Il~~L~~-----g~~--RF~el~~~l~gIS~~~Ls~rLk~Le~~glv~R~~~~~ 73 (112) T 1z7u_A 1 SNAMTTDKQTSINLALSTINGKWKLSLMDELFQ-----GTK--RNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNE 73 (112) T ss_dssp CCCTTSCHHHHHHHHHHTTCSTTHHHHHHHHHH-----SCB--CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECC T ss_pred CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHC-----CCC--CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 986658889849999999859879999999972-----998--7999998762200216999898999688612432578 Q ss_pred ------EEECCCHHHHHHHHH Q ss_conf ------686288078999999 Q T0586 75 ------SFVTSDKALFDQLKK 89 (125) Q Consensus 75 ------~~V~~~~~~~~~~~~ 89 (125) |..++....+.+... T Consensus 74 ~p~rveY~LT~~G~~L~pil~ 94 (112) T 1z7u_A 74 LPPRVEYTLTPEGYALYDALS 94 (112) T ss_dssp SSCEEEEEECHHHHHHHHHHH T ss_pred CCCEEHHHHHHHHHHHHHHHH T ss_conf 886304043475879999999 No 171 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=83.34 E-value=0.17 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 1788789999858987899999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~ 60 (125) ++++.+++|+..|||.+||.+||+. T Consensus 2 ~~~Ti~DIA~~aGVS~~TVSr~Ln~ 26 (338) T 3dbi_A 2 SLTTMLEVAKRAGVSKATVSRVLSG 26 (338) T ss_dssp ------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9888999999989889999999689 No 172 >3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Probab=83.05 E-value=0.55 Score=26.45 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=43.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 89999999999976498998881788789999858--------------9878999999999887916731783368628 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA--------------VNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~--------------VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) .|.+-+.-++.-=+.|-. ++..|+..|| -|.+-+|.++++|+..|+|+..++.|-.+++ T Consensus 51 ~Y~RaASilRkvY~~gpv-------GV~~L~~~YGg~k~rG~~P~~~~~aSg~iiR~~LQqLE~~glvek~~~~GR~iT~ 123 (141) T 3jyv_T 51 FYKRAASVARHIYMRKQV-------GVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISE 123 (141) T ss_dssp HHHHHHHHHHHHHHTCCS-------CSGGGTSSSSCCTTTCCCSSSCCCHHHHHHHHHHHHHHTTTSCCBCTTSSBCCCH T ss_pred HHHHHHHHHHHHHHCCCC-------CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEECH T ss_conf 789999999999860896-------4899999978887799999877776538899999999878887766999837798 Q ss_pred CHHH Q ss_conf 8078 Q T0586 80 DKAL 83 (125) Q Consensus 80 ~~~~ 83 (125) .-.. T Consensus 124 ~Gq~ 127 (141) T 3jyv_T 124 NGQR 127 (141) T ss_dssp HHHH T ss_pred HHHH T ss_conf 7899 No 173 >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Probab=82.97 E-value=1 Score=24.77 Aligned_cols=55 Identities=24% Similarity=0.461 Sum_probs=40.5 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 8899999999999764989988817887899998589878999999999887916731783368628 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) |+|.+.-..|. ..| -+.+ |-.+||+.+||+.++||+=+..+-..| ++|.|+-|.. T Consensus 17 p~Y~r~L~~l~---~~g----~~~i-SS~eLa~~~gi~~~qVRKDls~fG~~G----~~G~GY~V~~ 71 (215) T 2vt3_A 17 PLYYRFLKNLH---ASG----KQRV-SSAELSDAVKVDSATIRRDFSYFGALG----KKGYGYNVDY 71 (215) T ss_dssp HHHHHHHHHHH---HTT----CCEE-CHHHHHHHHCCCHHHHHHHHHHTTCCC---------EEHHH T ss_pred HHHHHHHHHHH---HCC----CEEE-CHHHHHHHHCCCHHHHHHHHHHHCCCC----CCCCCEEHHH T ss_conf 99999999999---859----9479-799999996989999998999864379----8988800999 No 174 >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A Probab=82.61 E-value=2.8 Score=21.84 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHH Q ss_conf 9999999997649899888178878999985898789999999998879167317833686288078999999999 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELA 92 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~ 92 (125) +|...|...|.. |. +...|+...|+|..++++-+..|.+.|+|+.. ++|+++++...........+. T Consensus 8 eIi~dIL~~~~~-----~~---~~T~i~~~~nLs~~~~~~~l~~L~~~GLIe~~-~~~y~lTekG~~~L~~l~~~~ 74 (95) T 1r7j_A 8 EIIQAILEACKS-----GS---PKTRIMYGANLSYALTGRYIKMLMDLEIIRQE-GKQYMLTKKGEELLEDIRKFN 74 (95) T ss_dssp HHHHHHHHHHTT-----CB---CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHC-----CC---CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEC-CCEEEECHHHHHHHHHHHHHH T ss_conf 999999999866-----99---86488998099999999999999988892526-984798751899999999999 No 175 >2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} Probab=82.11 E-value=2.9 Score=21.72 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=16.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEE Q ss_conf 878999985898789999999998879167 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~ 68 (125) |.+++|+.+|||++||.+. |...|+-. T Consensus 177 s~~~IA~~l~is~~Tv~Ri---l~~~g~~~ 203 (209) T 2r0q_C 177 AISKIAKEVNITRQTVYRI---KHDNGLSS 203 (209) T ss_dssp CHHHHHHHHTCCHHHHHHH---HTTCC--- T ss_pred CHHHHHHHHCCCHHHHHHH---HHHCCCCC T ss_conf 9999999989699999999---99779972 No 176 >2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 Probab=82.00 E-value=2.9 Score=21.70 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=34.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-CCEEE-ECC Q ss_conf 178878999985898789999999998879167317-83368-628 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR-GMGSF-VTS 79 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~-g~G~~-V~~ 79 (125) -+ +..+|+...|++...+.+++..|...|-|..-+ +.+.| |+. T Consensus 17 gl-~~~el~~~~~l~~~~~~~~L~~L~~~g~v~~~~~~~~~~~i~~ 61 (135) T 2v9v_A 17 GL-DWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAIST 61 (135) T ss_dssp CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECH T ss_conf 97-9999998949599999999999974897899951796589869 No 177 >2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} Probab=81.73 E-value=0.043 Score=33.75 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=31.6 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 881788789999858987899999999988791673 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) +.++ |..+||+.+|+|++||++=++.|++.|+|.. T Consensus 25 d~R~-s~~eia~~lglS~~tv~~Ri~rL~~~GiI~~ 59 (163) T 2gqq_A 25 DGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163) T ss_dssp CSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 4898-9999999989499999999999984793468 No 178 >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} Probab=81.42 E-value=3.1 Score=21.56 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=64.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC-CCCEEEECCCHHHHHHHHHHHHHH Q ss_conf 9999999999764989988817887899998589878999999999887916731-783368628807899999999999 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK-RGMGSFVTSDKALFDQLKKELADA 94 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~-~g~G~~V~~~~~~~~~~~~~~~~~ 94 (125) +++...+++-.. -+..|-+ |..-.+..+|+|-+-.+-++..|+.+|.|... -|+.+.++-+..........+.+. T Consensus 7 ~~v~~r~~~il~--lladgCk--tts~I~~~Lg~sh~~A~~~ly~Lakeg~V~~v~ig~~aiwCl~~d~y~nlV~~i~Re 82 (165) T 2vxz_A 7 REVLVRLRDILA--LLADGCK--TTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMDQYRQLVDGMIRE 82 (165) T ss_dssp HHHHHHHHHHHH--HHTTCCE--EHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH--HHHCCCH--HHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHH T ss_conf 999999999999--9975450--899999982650899999999998668169998634479995637999999999999 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999999998199998999999999 Q T0586 95 ITERFLEEAKSIGLDDQTAIELLIKR 120 (125) Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (125) +..++..-+...+++.++..|+.+- T Consensus 83 -i~RlV~~~~lkfI~P~rl~rLI~kD 107 (165) T 2vxz_A 83 -VERLVTTNKLKFISPPRLHDLIIKD 107 (165) T ss_dssp -HHHHHHHTTCSEECHHHHHHHHHHS T ss_pred -HHHHHHHCCCEECCCHHHHHHHHHC T ss_conf -9999971465020718999999708 No 179 >3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} Probab=81.42 E-value=3.1 Score=21.56 Aligned_cols=40 Identities=5% Similarity=0.162 Sum_probs=30.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE--ECCCCEEEECCC Q ss_conf 78878999985898789999999998879167--317833686288 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIY--AKRGMGSFVTSD 80 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~--~~~g~G~~V~~~ 80 (125) ..+..++|+.+|||..|+|- -+..|+|. .+...|+.+-.. T Consensus 16 ~ytIgevA~~~gvs~~tLRy----YE~~GLl~p~~r~~ngyR~Y~~ 57 (148) T 3gpv_A 16 YYTIGQVAKMQHLTISQIRY----YDKQGLFPFLQRNEKGDRIFNE 57 (148) T ss_dssp CBCHHHHHHHTTCCHHHHHH----HHHTTCCTTCEECTTCCEEBCH T ss_pred CCCHHHHHHHHCCCHHHHHH----HHHCCCCCCCEECCCCCEECCH T ss_conf 77699999998949889999----9986998842015898233144 No 180 >1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A Probab=81.35 E-value=3.1 Score=21.55 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=29.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--CCCCEEEECCC Q ss_conf 8789999858987899999999988791673--17833686288 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTSD 80 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~--~~g~G~~V~~~ 80 (125) +..++|+.+|||+.|+|- -+..|+|.- +...|+.+=.. T Consensus 4 tI~e~a~~~gvs~~tlR~----Ye~~GLl~p~~r~~~gyR~Y~~ 43 (109) T 1r8d_A 4 QVKQVAEISGVSIRTLHH----YDNIELLNPSALTDAGYRLYSD 43 (109) T ss_dssp CHHHHHHHHSCCHHHHHH----HHHTTSSCCSEECTTCCEEBCH T ss_pred CHHHHHHHHCCCHHHHHH----HHHCCCCCCCCCCCCCCEEECH T ss_conf 199999998959999999----9876898987318999643169 No 181 >2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} Probab=81.30 E-value=1.4 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=31.1 Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 99888178878999985898789999999998879167317833686 Q T0586 31 WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 31 l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) |.+++.+-+..+.|+.+|||+++|++ .+.+.-++-.+.|.+.++ T Consensus 25 l~~~~~~lt~~evA~~LGvs~~~V~~---~i~~g~Llav~~gg~~~~ 68 (148) T 2kfs_A 25 LDPDEPTYDLPRVAELLGVPVSKVAQ---QLREGHLVAVRRAGGVVI 68 (148) T ss_dssp SCTTSCEEEHHHHHHHHTCCHHHHHH---HHHTTSCCCEEETTEEEE T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHH---HHHCCCEEEEECCCEEEE T ss_conf 25776634899999996988899999---998794799970993798 No 182 >2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A Probab=81.10 E-value=3.1 Score=21.49 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=35.3 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC-CEEEECCC Q ss_conf 98998881788789999858987899999999988791673178-33686288 Q T0586 29 GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGSFVTSD 80 (125) Q Consensus 29 G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g-~G~~V~~~ 80 (125) ..+|....+-++.++|+.+|||..|+|- -+..|+|...+. .|+.+-.. T Consensus 3 ~~~p~~~~~~tIGevA~~~gvs~~TLR~----YE~~GLl~p~R~~~g~R~Y~~ 51 (154) T 2zhg_A 3 KKLPRIKALLTPGEVAKRSGVAVSALHF----YESKGLITSIRNSGNQRRYKR 51 (154) T ss_dssp -------CCBCHHHHHHHHTSCHHHHHH----HHHTTSSCCEECTTSCEEBCT T ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHH----HHHCCCCCCCCCCCCCEEEEH T ss_conf 7661334462699999998869999999----998889998637898066316 No 183 >1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69 Probab=80.78 E-value=2.5 Score=22.11 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=39.3 Q ss_pred CCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE------EEECCCHHHHHHHHH Q ss_conf 9888178878999985-898789999999998879167317833------686288078999999 Q T0586 32 KGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG------SFVTSDKALFDQLKK 89 (125) Q Consensus 32 ~~G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G------~~V~~~~~~~~~~~~ 89 (125) ..|.. .-.+|...+ |||..+..+-++.|++.|+|++..... |.+++....+.+... T Consensus 45 ~~g~~--RF~el~~~l~gIS~~vLs~rLk~Le~~GlV~R~~~~~~p~rveY~LT~~G~~L~~il~ 107 (131) T 1yyv_A 45 RDGTH--RFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131) T ss_dssp GGCCE--EHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH T ss_pred HCCCC--CHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 73998--6999998833310588999999999779315552588873499997087999999999 No 184 >1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Probab=80.46 E-value=1.9 Score=22.92 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=27.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEE Q ss_conf 788789999858987899999999988791673178336 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS 75 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~ 75 (125) + |.+++|+.+|||++||++.++.-...| ..++.|. T Consensus 23 ~-s~~~IAk~lg~s~~tV~r~lk~~~~~~---~~~~~gr 57 (141) T 1u78_A 23 V-SLHEMSRKISRSRHCIRVYLKDPVSYG---TSKRAPR 57 (141) T ss_dssp C-CHHHHHHHHTCCHHHHHHHHHSGGGTT---CCCCCCC T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHCCCC---CCCCCCC T ss_conf 9-999999998958999999999701223---4334547 No 185 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=79.51 E-value=0.29 Score=28.32 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.4 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 8178878999985898789999999 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~ 59 (125) ++-++.+++|+..|||++||.+||+ T Consensus 4 ~~k~Ti~dIA~~aGVS~~TVSrvLn 28 (333) T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALS 28 (333) T ss_dssp ------------------------- T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9998599999998979999999978 No 186 >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 Probab=79.47 E-value=1.8 Score=23.11 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.1 Q ss_pred CCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 8178878999985-----898789999999998879167317 Q T0586 35 DKLPSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 35 ~~LPser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) .+-||..++-+.+ .||++||=+++..|.+.|+|.... T Consensus 32 ~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~~~gli~~~~ 73 (136) T 1mzb_A 32 QRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136) T ss_dssp CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 999999999999997587888899999999999689389988 No 187 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} Probab=78.97 E-value=1.6 Score=23.35 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=32.2 Q ss_pred CCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 88178878999985-----89878999999999887916731783 Q T0586 34 EDKLPSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 34 G~~LPser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) ++.+ |..++.+.+ +||++||=+.|..|++.|+|...... T Consensus 31 ~~h~-sa~ei~~~l~~~~~~is~aTVYRtL~~L~e~gii~~~~~~ 74 (150) T 2w57_A 31 CQHI-SAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFE 74 (150) T ss_dssp GSSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECG T ss_pred CCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEEC T ss_conf 9999-9999999998608885789999999999967848999608 No 188 >1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12 Probab=78.55 E-value=1.2 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=20.0 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 178878999985898789999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~ 59 (125) ..||-|+||+.+|||.+.|..-++ T Consensus 32 ~yPStRqLAkrLg~SHTaiANKLr 55 (61) T 1g2h_A 32 EYPSTRKLAQRLGVSHTAIANKLK 55 (61) T ss_dssp HSCSHHHHHHHTTSCTHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 387389999995861899998999 No 189 >1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Probab=78.28 E-value=0.8 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.344 Sum_probs=23.3 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 999999764989988817887899998589878999999 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) +.++..+..| . |..++|..|||||+|+-+-+ T Consensus 12 ~~a~~l~~~G-----~---~~~~IA~~~gVSr~TlYryl 42 (52) T 1jko_C 12 EQISRLLEKG-----H---PRQQLAIIFGIGVSTLYRYF 42 (52) T ss_dssp HHHHHHHHTT-----C---CHHHHHHTTSCCHHHHHHHS T ss_pred HHHHHHHHCC-----C---CHHHHHHHHCCCHHHHHHHC T ss_conf 9999999878-----9---89999999797999999985 No 190 >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* Probab=77.98 E-value=1.8 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=32.1 Q ss_pred CCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 88178878999985-----89878999999999887916731783 Q T0586 34 EDKLPSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 34 G~~LPser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) +.. +|..++.+.+ +||++||=+.+..|.+.|+|...... T Consensus 35 ~~~-~sa~ei~~~l~~~~~~is~aTVYR~L~~L~~~gii~~~~~~ 78 (145) T 2fe3_A 35 MAH-PTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYG 78 (145) T ss_dssp SSC-CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCT T ss_pred CCC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 999-98999999988507898888999999999847917999948 No 191 >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 Probab=77.91 E-value=1.7 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=34.2 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 8881788789999858987899999999988791673178 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125) .|..+ ++.+||+..++....+|+.+..|.++|+|..+.. T Consensus 30 ~~~~l-~ee~la~~~~i~~k~vR~iL~~L~~~~lv~~~r~ 68 (110) T 1q1h_A 30 KGTEM-TDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKT 68 (110) T ss_dssp HCSCB-CHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEE T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 69887-8999998959999999999999998697240340 No 192 >3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} Probab=77.85 E-value=3.9 Score=20.83 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=47.6 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE Q ss_conf 8899999999999764989988817887899998589878999999999887916731783368 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125) ..-++|-..|.+. .|.+|-+++=+ -.++.+.||+|..+-.+|+-.|-.++.|+... .|++ T Consensus 224 ~~~e~il~~l~~~--~G~l~~~dkS~-pe~I~~~f~~SK~~fK~aiG~L~k~~~I~~~~-~~i~ 283 (285) T 3go5_A 224 NDAQMILTYLESN--GGFMTLNDKSS-PDDIKATFGISKGQFKKALGGLMKAGKIKQDQ-FGTE 283 (285) T ss_dssp HHHHHHHHHHHHT--TTEESCCTTSC-HHHHHHHHSSCHHHHHHHHHHHHHTTCEEEET-TEEE T ss_pred HHHHHHHHHHHHC--CCEECCCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-CEEE T ss_conf 5899999999975--99342799999-99999997919999999877876387499919-9799 No 193 >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} Probab=76.99 E-value=1.1 Score=24.41 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=30.4 Q ss_pred CCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 88178878999985-----898789999999998879167317 Q T0586 34 EDKLPSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 34 G~~LPser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) +..+ |..++.+.+ .+|++||=+++..|++.|+|...+ T Consensus 24 ~~~~-sa~ei~~~l~~~~~~i~~~TVYR~L~~l~~~gli~~i~ 65 (131) T 2o03_A 24 DDFR-SAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLH 65 (131) T ss_dssp CSCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEE T ss_pred CCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 9998-99999999997589998889999999998689489999 No 194 >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Probab=76.88 E-value=0.38 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 878999985898789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125) +.+++|+..|||++||.+|++ T Consensus 6 TikdIA~~aGVS~sTVSr~Ln 26 (339) T 3h5o_A 6 TMHDVAKAAGVSAITVSRVLN 26 (339) T ss_dssp --------------------- T ss_pred CHHHHHHHHCCCHHHHHHHHC T ss_conf 599999998959999999958 No 195 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=76.86 E-value=0.38 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.5 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 88789999858987899999999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~ 60 (125) ++.+++|+..|||.+||.+||+. T Consensus 4 ~Ti~dIA~~aGVS~~TVSraLn~ 26 (349) T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349) T ss_dssp ----------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHHCC T ss_conf 78999999988599999999679 No 196 >3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Probab=76.79 E-value=3.4 Score=21.24 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=33.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9889999999999976498998881788789999858987899999 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) +|--.+.+..|+..+..-.-..| | |..+||+.+|||++|+.+- T Consensus 8 ~~~~~~~~~rlk~~~~~~r~~~g--l-tq~~LA~~lGis~~~is~~ 50 (236) T 3bdn_A 8 TQEQLEDARRLKAIYEKKKNELG--L-SQESVADKMGMGQSGVGAL 50 (236) T ss_dssp CSHHHHHHHHHHHHHHHHTTTTT--C-CSHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHCC--C-CHHHHHHHHCCCHHHHHHH T ss_conf 99999999999999999998849--9-9999999979799999999 No 197 >1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A Probab=76.63 E-value=1.7 Score=23.25 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=27.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE Q ss_conf 8988999999999997649899888178878999985898789999999998879167317833 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125) ++|-+.++.+. | .+|+.|- +..+ ..|+=+....-.-+..|...|+-......| T Consensus 44 ~Rp~l~~ll~~----~-----~~gd~lv-v~~l-dRl~R~~~~~~~~~~~l~~~gi~l~~~~~~ 96 (183) T 1gdt_A 44 DRKGLDLLRMK----V-----EEGDVIL-VKKL-DRLGRDTADMIQLIKEFDAQGVSIRFIDDG 96 (183) T ss_dssp CCHHHHHHHHH----C-----CTTCEEE-ESSG-GGTCSSHHHHHHHHHHHHHTTCEEEEGGGC T ss_pred CCCHHHHHHHH----H-----CCCCEEE-EEEC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 77126888876----2-----3898899-9975-612567777687889987621442121331 No 198 >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 Probab=75.97 E-value=4.4 Score=20.50 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=45.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 999999999764989988817887899998589878999999999887916731783 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) .++.-++..+. -++.|+.+ +--++|..++|..+-|.+-+-.|..+|+|...|.- T Consensus 12 ~~~sLVK~~V~--sL~~~~~i-TAi~Is~kL~i~K~~INrQLYkL~~eG~v~mVpsn 65 (75) T 1sfu_A 12 EIFSLVKKEVL--SLNTNDYT-TAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75) T ss_dssp HHHHHHHHHHH--TSCTTCEE-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS T ss_pred HHHHHHHHHHH--CCCCCCCC-HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCC T ss_conf 99999999997--38754422-19999988630087888999999868965442499 No 199 >1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14 Probab=75.68 E-value=3.3 Score=21.33 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=25.9 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 8899999999999764989988817887899998589878999999999887 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) |....+...+++.=+..+| .|. +.++||..||+|..+|++.++..... T Consensus 72 Pk~~~~~~~~Rn~~I~~ef-~G~---n~~eLArkY~LS~r~I~kIi~~~rk~ 119 (129) T 1rr7_A 72 PRGQALDSLIRDLRIWNDF-NGR---NVSELTTRYGVTFNTVYKAIRRMRRL 119 (129) T ss_dssp CCSHHHHHHHHHHHHHHHC-CSS---CHHHHHHHHTCCHHHHHHHHHHHHHC T ss_pred ECCHHHHHHHHHHHHHHHC-CCC---CHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 2607899999999999990-899---89999999897799999999999988 No 200 >3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B Probab=75.52 E-value=4.5 Score=20.46 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=51.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC-------CCHHHHHHHHHHHHHCCE--EEECCCCEEEEC Q ss_conf 68889889999999999976498998881788789999858-------987899999999988791--673178336862 Q T0586 8 FHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA-------VNPNTVSRAYQELERAGY--IYAKRGMGSFVT 78 (125) Q Consensus 8 ~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~-------VSr~TVr~Al~~L~~~G~--i~~~~g~G~~V~ 78 (125) |-+....|.+++.+|.+....-.=+.|--+ +..+|-..|+ ||+..+.+|...|+..|+ -.++-++|.+|. T Consensus 67 ~~s~~~f~~eLa~qi~e~~~~~~~~~gGii-~L~dl~~~~NraRG~eLvSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vv 145 (218) T 3cuq_B 67 YGSGTQYHMQLAKQLAGILQVPLEERGGIM-SLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVI 145 (218) T ss_dssp SSCSCHHHHHHHHHHHHHHHHHHHHTTSEE-EHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEE T ss_conf 376017999999999999998887547942-1999999999865998679999999999998649995999967945999 No 201 >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli BL21} Probab=75.00 E-value=2.7 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=29.7 Q ss_pred CCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 78878999985-----898789999999998879167317 Q T0586 37 LPSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 37 LPser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) =||..++-+.+ ++|++||=+.+..|++.|+|.... T Consensus 33 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~Glv~~~~ 72 (83) T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83) T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 9999999999986089987614999999999889889997 No 202 >1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Probab=74.59 E-value=3.1 Score=21.52 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=24.8 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 817887899998589878999999999887 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) .+-|+..++++.+|++...+++++..+... T Consensus 113 ~~~pt~~e~a~~l~~~~~~~~~~l~~~~~~ 142 (239) T 1rp3_A 113 GREPTDEEVAKELGISTEELFKTLDKINFS 142 (239) T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHCCCC T ss_conf 479999999541499899999998720343 No 203 >1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60 Probab=74.58 E-value=4.8 Score=20.27 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHH------CCEEEECCCCEEEECCCHHHHHH-- Q ss_conf 99999999976498998881788789999858--987899999999988------79167317833686288078999-- Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLA--VNPNTVSRAYQELER------AGYIYAKRGMGSFVTSDKALFDQ-- 86 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~--VSr~TVr~Al~~L~~------~G~i~~~~g~G~~V~~~~~~~~~-- 86 (125) |+...|..-+ |..|+.| |..+|++.++ ++...|++++..|.. .|+-...-+.|+.....+..... T Consensus 7 el~~~IEAlL----Fas~~Pl-s~~~L~~~~~~~~~~~~i~~~l~~L~~~y~~~~~gi~i~~~~~gy~l~tk~e~~~~v~ 81 (162) T 1t6s_A 7 QLLRSLEALI----FSSEEPV-NLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVR 81 (162) T ss_dssp HHHHHHHHHH----HHCSSCB-CHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHH T ss_pred HHHHHHHHHH----HHCCCCC-CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECHHHHHHHH T ss_conf 9999999999----7638988-9999999866589999999999999998651566469998378568997788778999 Q ss_pred ------HHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf ------99999999999999999981999989999 Q T0586 87 ------LKKELADAITERFLEEAKSIGLDDQTAIE 115 (125) Q Consensus 87 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (125) ....+-...++.+..-+....++..++.+ T Consensus 82 ~l~~~~~~~~LS~aalEtLAiIAY~QPitr~eI~~ 116 (162) T 1t6s_A 82 QLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQ 116 (162) T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHH T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 85265555677889999999999748726999999 No 204 >3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} Probab=73.86 E-value=3.8 Score=20.91 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=38.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 9877777688898899999999999764989988817887899998589878999 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVS 55 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr 55 (125) ||+|..+-..++ -++|.+.-.+.+....| +.+ |.+++|+..|||+.|+- T Consensus 1 ~~~m~~~p~~~r--r~~Il~aa~~l~~~~G~---~~~-ti~~Ia~~agvs~~t~Y 49 (196) T 3he0_A 1 SNAMTDNPAVDK--RDQILAAAEQLIAESGF---QGL-SMQKLANEAGVAAGTIY 49 (196) T ss_dssp ----------CC--HHHHHHHHHHHHHHHCT---TTC-CHHHHHHHHTSCHHHHH T ss_pred CCCCCCCCCHHH--HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHCCCCCCCCC T ss_conf 998989981999--99999999999997391---306-79999998099978651 No 205 >1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Probab=73.78 E-value=5 Score=20.14 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=53.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHHHC---------CCHHHHHHHHHHHHHCCE---EE Q ss_conf 7768889889999999999976498-----998881788789999858---------987899999999988791---67 Q T0586 6 PTFHADKPIYSQISDWMKKQMITGE-----WKGEDKLPSVREMGVKLA---------VNPNTVSRAYQELERAGY---IY 68 (125) Q Consensus 6 ~~~~~~~Ply~qI~~~l~~~I~~G~-----l~~G~~LPser~La~~~~---------VSr~TVr~Al~~L~~~G~---i~ 68 (125) .+|-++.-.|.+++.+|.+...+.. -..|--+ +..+|-..|+ ||+..+.+|.+.|+..|+ +. T Consensus 4 ~~~~s~~~f~~ELa~qi~e~~~~~~~~~~~~~ngGmI-tL~dl~~~~NraR~~G~~lvSp~Dl~~A~~~l~~Lg~~~~~l 82 (169) T 1u5t_B 4 EKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMII-TLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKL 82 (169) T ss_dssp SCCSSSTTHHHHHHHHHHHHHHTTTTTSSSCCCCCCE-ETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSCEE T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 3205640899999999999996443310345687567-899999999986246877579999999999999769985799 Q ss_pred ECCCCEEEECC Q ss_conf 31783368628 Q T0586 69 AKRGMGSFVTS 79 (125) Q Consensus 69 ~~~g~G~~V~~ 79 (125) ++-++|..|.. T Consensus 83 ~~~~sg~iv~~ 93 (169) T 1u5t_B 83 VKVNKRILCVT 93 (169) T ss_dssp EEETTTEEEEE T ss_pred EECCCCEEEEE T ss_conf 98488589997 No 206 >3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A* Probab=73.22 E-value=3 Score=21.60 Aligned_cols=41 Identities=5% Similarity=0.096 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 999999999997649899888178878999985898789999999998 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125) |+ -+......|..|.. ++..+||+.+|+|+++|.++++.+. T Consensus 27 ~E-~a~~y~rlL~~~~~------~tQ~eLA~~lG~Srs~VS~~L~l~~ 67 (189) T 3mky_B 27 YE-RGQRYASRLQNEFA------GNISALADAENISRKIITRCINTAK 67 (189) T ss_dssp HH-HHHHHHHHHHTTTT------TCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HH-HHHHHHHHHHHHHC------CCHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99-99999999986257------5899999997979999999999975 No 207 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A Probab=73.21 E-value=5.2 Score=20.05 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=40.1 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH---CCEEEECCCCEEEECCCHHHHHHHHHHH Q ss_conf 88789999858987899999999988---7916731783368628807899999999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELER---AGYIYAKRGMGSFVTSDKALFDQLKKEL 91 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~---~G~i~~~~g~G~~V~~~~~~~~~~~~~~ 91 (125) -|...=|+.++||+.||.++++.|++ .-+.++. ++|...++....+......+ T Consensus 17 ~s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~-~~~~~lT~~G~~l~~~a~~~ 72 (305) T 3fxq_A 17 GSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRT-KRGVSLTSFGQAFMKHARLI 72 (305) T ss_dssp SCHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEEC-SSSEEECHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-CCCEEECHHHHHHHHHHHHH T ss_conf 999999999898889999999999998599999984-99158997375221343455 No 208 >3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} Probab=73.08 E-value=1.6 Score=23.45 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=38.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 98899999999999764989988817887899998589878999999999887916731 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +|--.+|+++|.+.... -..+ |.++||+..|||.+||-+-.+.|--.||-+-+ T Consensus 16 s~~e~~Ia~yil~~~~~-----~~~~-si~~lA~~~~vS~aTv~Rf~kkLGf~gf~efk 68 (107) T 3iwf_A 16 TKNEKKIAQFILNYPHK-----VVNM-TSQEIANQLETSSTSIIRLSKKVTPGGFNELK 68 (107) T ss_dssp CHHHHHHHHHHHHCHHH-----HTTC-CHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHH T ss_pred CHHHHHHHHHHHHCHHH-----HHHC-CHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH T ss_conf 89999999999959999-----9776-49999989698988999999994899899999 No 209 >3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Probab=72.84 E-value=5.2 Score=20.06 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=35.0 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEE Q ss_conf 81788789999858987899999999988791673178336 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS 75 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~ 75 (125) +.+ +..+|+...|++...+..++..|+-.|+|...+|.-+ T Consensus 340 ~~~-~~d~l~~~~~l~~~~~~~~L~~LEl~G~V~~~~G~~y 379 (382) T 3maj_A 340 SPV-GIDDLIRLSGISPAVVRTILLELELAGRLERHGGSLV 379 (382) T ss_dssp SCE-EHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECTTSEE T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEE T ss_conf 998-8999999989099999999999997696784599479 No 210 >1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A Probab=72.73 E-value=5.3 Score=19.98 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=28.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--CCCCEEEECC Q ss_conf 8789999858987899999999988791673--1783368628 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTS 79 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~--~~g~G~~V~~ 79 (125) .+.++|+.+|||+.|+|-- ++.|+|.- +...|+.+-. T Consensus 2 ~IgElA~~~gvs~~tlRyY----e~~GLl~p~~r~~~gyR~Y~ 40 (135) T 1q06_A 2 NISDVAKITGLTSKAIRFY----EEKGLVTPPMRSENGYRTYT 40 (135) T ss_dssp CHHHHHHHHTCCHHHHHHH----HHTTCSCCCEECTTSCEECC T ss_pred CHHHHHHHHCCCHHHHHHH----HHCCCCCCCCCCCCCCEECH T ss_conf 7899999989199999999----98789898766999844310 No 211 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=72.29 E-value=0.58 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.8 Q ss_pred CCHHHHHHHHCCCHHHHHHHHH Q ss_conf 8878999985898789999999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~ 59 (125) ++.+++|+..|||.+||.+|++ T Consensus 6 ~Ti~DIA~~aGVS~~TVSr~Ln 27 (332) T 2o20_A 6 TTIYDVARVAGVSMATVSRVVN 27 (332) T ss_dssp ---------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHHC T ss_conf 7799999998969999999968 No 212 >1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 1trr_A* 1tro_A* Probab=71.07 E-value=4 Score=20.80 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 87899998589878999999999887 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) |.|++++.+|||.+||.+.=+.|... T Consensus 60 s~reIa~~~gvS~aTItR~s~~Lk~~ 85 (101) T 1jhg_A 60 SQRELKNELGAGIATITRGSNSLKAA 85 (101) T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHS T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 79999999698656678989998858 No 213 >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} Probab=71.05 E-value=4.5 Score=20.48 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=28.2 Q ss_pred CCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 8878999985-----8987899999999988791673178 Q T0586 38 PSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKRG 72 (125) Q Consensus 38 Pser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125) ||..++-+.+ .+|++||=+.+..|.+.|+|..... T Consensus 34 ~ta~eI~~~l~~~~~~i~~~TVYR~L~~L~~~gii~~i~~ 73 (145) T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145) T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 8999999999975888654889999999997496798412 No 214 >3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli} Probab=68.69 E-value=6.5 Score=19.41 Aligned_cols=38 Identities=8% Similarity=0.184 Sum_probs=27.3 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 999999976498998881788789999858987899999999 Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~ 60 (125) ...+...|... +.+.+ +..+||+.+|+|+.+..+.++. T Consensus 9 ~~rv~~~I~~~---~~~~~-sl~~lA~~~~~S~~~l~r~fk~ 46 (120) T 3mkl_A 9 RTRVCTVINNN---IAHEW-TLARIASELLMSPSLLKKKLRE 46 (120) T ss_dssp HHHHHHHHHTS---TTSCC-CHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHC---CCCCC-CHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999867---68999-9999999999299999999998 No 215 >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Probab=68.62 E-value=3.5 Score=21.15 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=34.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE--EEEC Q ss_conf 878999985898789999999998879167317833--6862 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG--SFVT 78 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G--~~V~ 78 (125) +--+|+.++++...-|.++|-.|..+|+|...|--. +|.+ T Consensus 32 TAieisrqLniEK~~INkqLYkLq~~g~v~mvp~nPPkWfk~ 73 (82) T 1oyi_A 32 TAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMT 73 (82) T ss_dssp EHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHH T ss_conf 799999998675999999999998565554168999603330 No 216 >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Probab=67.55 E-value=0.85 Score=25.21 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=38.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 988999999999997649899888178878999985-898789999999998879167317 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) .++..+|.+.|+.. .- .+=+ +..++++.+ +++...|++|+..|.++|+|+.-- T Consensus 206 ~~~~~~Vl~~i~~~----~~--~~Gv-~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTi 259 (270) T 2pi2_A 206 TVAQNQVLNLIKAC----PR--PEGL-NFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTV 259 (270) T ss_dssp ------------------------------------------------------------- T ss_pred CHHHHHHHHHHHCC----CC--CCCC-CHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCC T ss_conf 78999999987436----87--6883-8999999842999999999999997598897125 No 217 >2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Probab=67.47 E-value=5.8 Score=19.73 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=23.6 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHH----HHHHHHH Q ss_conf 9888178878999985898789999----9999988 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~----Al~~L~~ 63 (125) ..|+.. |..++|+.||||+..||+ |++.|.. T Consensus 21 ~~~~~~-tl~eia~~lgis~erVrqie~~Al~kLr~ 55 (68) T 2p7v_B 21 DMNTDY-TLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68) T ss_dssp TSSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHGGGS T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 999976-89999999896999999999999999884 No 218 >2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Probab=67.24 E-value=4.1 Score=20.75 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999997649899888178878999985898789999999 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) +.+.+.|++.. | ++|.++||+.+|||++||....+ T Consensus 8 ee~l~Rl~e~~-------g--~~sq~eLA~~lgvs~~tis~~~~ 42 (189) T 2fjr_A 8 VDVLDRICEAY-------G--FSQKIQLANHFDIASSSLSNRYT 42 (189) T ss_dssp HHHHHHHHHHH-------T--CSSHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHH-------C--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999984-------9--87799999997969999999995 No 219 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Probab=66.73 E-value=3.5 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC Q ss_conf 878999985898789999999998879 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAG 65 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G 65 (125) |.+++|..||||++|++.=.+.....| T Consensus 25 s~~~vA~~lGIs~~tl~~W~r~~~~~~ 51 (97) T 2jn6_A 25 SLQQIANDLGINRVTLKNWIIKYGSNH 51 (97) T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHCCCS T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHCC T ss_conf 599999997999350129999985324 No 220 >3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A Probab=66.50 E-value=5.3 Score=19.97 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.8 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) |.+++++.+|||.+||.+.=+.|.. T Consensus 60 syreIa~~~gvS~aTIsRv~r~L~~ 84 (107) T 3frw_A 60 TYLDISEKTGASTATISRVNRSLNY 84 (107) T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 9999999969875758999999874 No 221 >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Probab=65.44 E-value=3.4 Score=21.28 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=39.5 Q ss_pred HHHHHHHHHHHCCCCCC--CC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 99999999976498998--88--17887899998589878999999999887916731783 Q T0586 17 QISDWMKKQMITGEWKG--ED--KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~--G~--~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) .+...|.++|..-.-.+ .. +--|..++++..||++.+++++...++..|..-..... T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~a~l~~~~~~~~~~~~~~~e~~g~~~~~~~~ 76 (398) T 3ez2_A 16 RMLNVLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPA 76 (398) T ss_dssp HHHHHHHHHHTTTC------CCCCCBCGGGGGGSTTCCHHHHHHHHHHHHHHTCCCCEEEC T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9999999999976503574102576779999874199879999999731125778776668 No 222 >1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A* Probab=65.21 E-value=7.6 Score=18.97 Aligned_cols=41 Identities=7% Similarity=0.026 Sum_probs=31.3 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE---ECCCCEEEECC Q ss_conf 8178878999985898789999999998879167---31783368628 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY---AKRGMGSFVTS 79 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~---~~~g~G~~V~~ 79 (125) +++.|..++|+.+|||+.|.| .-.+.|++. +.+..|++.=. T Consensus 3 ~~~ytIge~ak~~gis~~tLR----yYd~~GLl~P~~~d~~ngYRyYs 46 (278) T 1r8e_A 3 ESYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYT 46 (278) T ss_dssp CCEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEE T ss_pred CCCEEHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCCEECC T ss_conf 886209999999885989999----99978998987898999977749 No 223 >1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Probab=65.00 E-value=7.7 Score=18.94 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=39.0 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC-CE-EEECCCCEEEECCCHHHHHHHHHHHH Q ss_conf 887899998589878999999999887-91-67317833686288078999999999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERA-GY-IYAKRGMGSFVTSDKALFDQLKKELA 92 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~-G~-i~~~~g~G~~V~~~~~~~~~~~~~~~ 92 (125) -|.+.=|+.+++|+++|.++++.|+++ |. +..+.++|...++....+.....++. T Consensus 16 ~s~s~AA~~l~isqsavS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l 72 (294) T 1ixc_A 16 GNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRIL 72 (294) T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHCCCCCCCHHH T ss_conf 999999999888889999999999998699999988994277150310333430677 No 224 >2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20 Probab=64.90 E-value=7 Score=19.22 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=31.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC Q ss_conf 87899998589878999999999887916731783368628 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125) +..+++...+++..++.++++.|...|+|+.. +.++.++. T Consensus 310 ~~~~~~~~~~~~~~~~~~~L~~L~~~~lI~~~-~~~Y~i~d 349 (357) T 2fna_A 310 RALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSE 349 (357) T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESS T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE-CCEEEECC T ss_conf 99999850699999999999999978968998-99999898 No 225 >3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A Probab=64.88 E-value=6.1 Score=19.57 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=45.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC---------CCHHHHHHHHHHHHHCC--EEEECCCCEEEECCCH Q ss_conf 9999999999976498998881788789999858---------98789999999998879--1673178336862880 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA---------VNPNTVSRAYQELERAG--YIYAKRGMGSFVTSDK 81 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~---------VSr~TVr~Al~~L~~~G--~i~~~~g~G~~V~~~~ 81 (125) |-+++.+|.+--..-.=..|--+ +..+|-..|+ ||+.-+.+|++.|...| +-...-|++.+|...+ T Consensus 73 y~eLavqIvEvC~~tr~~nGGlI-~L~dL~~~~nr~Rg~~~~~IS~dDi~~Ai~~L~~Lg~g~~l~~i~g~~~V~Svp 149 (234) T 3cuq_A 73 YYELGVQIIEVCLALKHRNGGLI-TLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVP 149 (234) T ss_dssp HHHHHHHHHHHHHHHHHHHSSEE-EHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSC T ss_pred HHHHHHHHHHHHHHHHHCCCCEE-EHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECC T ss_conf 99999999999987644277765-899999999985577667669999999999999849987999989978999689 No 226 >2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str} Probab=64.62 E-value=7.8 Score=18.90 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=39.9 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCC----CEEEECCCHHHHHHHHHH Q ss_conf 887899998589878999999999887---91673178----336862880789999999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRG----MGSFVTSDKALFDQLKKE 90 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g----~G~~V~~~~~~~~~~~~~ 90 (125) -|...=|+.+|+|..+|.+.++.|+++ -++++.++ .|+.+++....+...... T Consensus 39 GS~t~AA~~L~iSq~avs~~i~~LE~~lg~~L~~R~~~~~~~~G~~LT~~G~~ll~~~~~ 98 (135) T 2ijl_A 39 GSISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYRG 98 (135) T ss_dssp SCHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEECHHHHHHHHHHHH T ss_conf 999999872199878999999999998598369985478779852343999999999999 No 227 >2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Probab=64.57 E-value=7.8 Score=18.89 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 99999999976498-998881788789999858987899999999988791673 Q T0586 17 QISDWMKKQMITGE-WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 17 qI~~~l~~~I~~G~-l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) +.|-.+++.|++-- ..|...| +..+....+..-...+.+++.-|+..|+|.- T Consensus 47 e~Yl~iRN~Ii~~wr~np~~~L-t~~~~~~~l~~d~~~i~rI~~FL~~~GlINf 99 (104) T 2fq3_A 47 EVYMRYRNFMVNSYRLNPNEYF-SVTTARRNVSGDAAALFRLHKFLTKWGLINY 99 (104) T ss_dssp HHHHHHHHHHHHHHHHCTTSCC-CHHHHHHHSCSCHHHHHHHHHHHHHTTSSSS T ss_pred HHHHHHHHHHHHHHHHCCCEEE-EHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 9999999999999981999567-4999974646889999999999998495513 No 228 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Probab=64.49 E-value=6.2 Score=19.56 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=33.3 Q ss_pred CCCCCCCCCC--CC---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8777776888--98---89999999999976498998881788789999858987899999999988 Q T0586 2 NAMNPTFHAD--KP---IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 2 ~~M~~~~~~~--~P---ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ..||+..... +| +-..-..++...+.. |. |..++|.+|||+.+||+.-++.-.. T Consensus 6 ~~~~~~m~~k~KRkrr~~T~e~K~eiv~~~e~-----G~---s~~~vAre~gi~~sTl~~wvK~~~k 64 (87) T 2elh_A 6 SGMNIRMGTKGKRPLRSLTPRDKIHAIQRIHD-----GE---SKASVARDIGVPESTLRGWCKNEDK 64 (87) T ss_dssp CCCCCCCCSCCSSCCSSCCHHHHHHHHHHHHH-----TC---CHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC-----CC---CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 50312216679978821499999999999997-----99---8999999989788799999997999 No 229 >2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} Probab=64.42 E-value=7.8 Score=18.87 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=30.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9889999999999976498998881788789999858987899999 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) .|.|..|...|+..=.. ..+ |..+||+.+|||++||.+- T Consensus 5 ~~~~~~l~~~ir~~R~~------~gl-tq~~lA~~lgvs~~~is~~ 43 (84) T 2ef8_A 5 DHRYRCLVQLLTKLRKE------ASL-SQSELAIFLGLSQSDISKI 43 (84) T ss_dssp CHHHHHHHHHHHHHHHH------TTC-CHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHH------CCC-CHHHHHHHHCCCHHHHHHH T ss_conf 79999999999999999------599-9999999872699999999 No 230 >1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1 Probab=64.18 E-value=7.4 Score=19.04 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=23.5 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEE Q ss_conf 8817887899998589878999999999887916 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYI 67 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i 67 (125) ..+-|+..++|+.+|++...++.....-.....+ T Consensus 297 lgr~pt~eeiA~~l~~~~~~~~~~~~~~~~~~~~ 330 (438) T 1l9z_H 297 LGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438) T ss_pred HCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 3899426689999477437888999998617875 No 231 >2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans} Probab=63.63 E-value=8.1 Score=18.78 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.9 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEE--ECCCCEEEECC Q ss_conf 878999985898789999999998879167--31783368628 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIY--AKRGMGSFVTS 79 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~--~~~g~G~~V~~ 79 (125) +..++|+.+|||..|+|- -+..|+|. .+...|+..-. T Consensus 3 tI~e~a~~~gvs~~tlR~----Ye~~GLl~p~~r~~~gyR~Y~ 41 (108) T 2vz4_A 3 SVGQVAGFAGVTVRTLHH----YDDIGLLVPSERSHAGHRRYS 41 (108) T ss_dssp CHHHHHHHHTCCHHHHHH----HHHHTSSCCSEECSSCCEEBC T ss_pred CHHHHHHHHCCCHHHHHH----HHHCCCCCCCCCCCCCCEECH T ss_conf 189999998949999999----875378688656999931000 No 232 >3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} Probab=63.41 E-value=7 Score=19.20 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=29.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9889999999999976498998881788789999858987899999 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) .|-|+.|...|+..=..- .| |..+||+.+|||++++.+- T Consensus 9 ~~~~~~l~~~lk~~R~~~------gl-tq~~lA~~~gis~~~i~~i 47 (83) T 3f6w_A 9 NARYQALLDLLLEARSAA------GI-TQKELAARLGRPQSFVSKT 47 (83) T ss_dssp HHHHHHHHHHHHHHHHHH------TC-CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHHH T ss_conf 899999999999999982------99-9999998853899999999 No 233 >1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H Probab=63.29 E-value=7.7 Score=18.91 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=24.0 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHH----HHHHHHH Q ss_conf 888178878999985898789999----9999988 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~----Al~~L~~ 63 (125) .++.+ |..++|+.+|||+..||+ |+..|.. T Consensus 27 ~~~~~-tl~eIa~~lgiS~erVrqie~~al~kLr~ 60 (73) T 1ku3_A 27 DGREH-TLEEVGAYFGVTRERIRQIENKALRKLKY 60 (73) T ss_dssp TSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHHHHH T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99987-89999999897999999999999999987 No 234 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} Probab=63.26 E-value=8.2 Score=18.73 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=37.5 Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 998881788789999858987899999999988791673178336862 Q T0586 31 WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 31 l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) +..|. + |..+||+.+|++...+++-+..|...|++......|.|-. T Consensus 67 L~~gp-~-t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~e~~~~~~~~~ 112 (369) T 3gwz_A 67 LQEGP-R-TATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369) T ss_dssp GTTSC-E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC T ss_pred HHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEC T ss_conf 86699-9-9999998879198999999999997896799689974756 No 235 >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Probab=63.20 E-value=8.3 Score=18.73 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=32.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC-E Q ss_conf 87899998589878999999999887916731783-3 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM-G 74 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~-G 74 (125) ..+++|..|+||---+|--+.-|+.+|-|.+.|=+ | T Consensus 16 rT~EIA~~~~~SaYQAR~YL~~LEKegkIrRsPlRrG 52 (81) T 2htj_A 16 KTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRG 52 (81) T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSS T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 3899999856089999999999977077015851001 No 236 >1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Probab=62.35 E-value=7.6 Score=18.96 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=23.5 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 8817887899998589878999999999887 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) |... +.+++++.++++...+.++++.+... T Consensus 63 ~~pr-tl~eia~~~~~~~k~l~k~~~~l~~~ 92 (207) T 1c9b_A 63 GVPR-TFKEICAVSRISKKEIGRCFKLILKA 92 (207) T ss_dssp TCCC-CHHHHHHTSSSCHHHHHHHHHHHHHH T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 8987-39999999788899999999999999 No 237 >1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A Probab=61.97 E-value=8.7 Score=18.58 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=32.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 89889999999999976498998881788789999858987899999999988 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ..++|+ +...+...+..| + +..++|+.+|+||++|.++++.+.= T Consensus 7 ~~~~~E-~g~~~~~l~~~G-------~-tq~~iA~~lg~srs~VS~~lrl~~L 50 (192) T 1zx4_A 7 QHSIRE-IGLRLMRMKNDG-------M-SQKDIAAKEGLSQAKVTRALQAASA 50 (192) T ss_dssp SSCHHH-HHHHHHHHHHTT-------C-CHHHHHHHHTCCHHHHHHHHHHHTS T ss_pred CCCHHH-HHHHHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 588999-999999999879-------9-9999999989799999999999849 No 238 >3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} Probab=61.67 E-value=8.2 Score=18.76 Aligned_cols=46 Identities=28% Similarity=0.316 Sum_probs=33.1 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCCCEEEECCCHHHH Q ss_conf 87899998589878999999999887---91673178336862880789 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRGMGSFVTSDKALF 84 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g~G~~V~~~~~~~ 84 (125) |...=|+.++||+++|.++++.|+++ -+..+..|+|...++....+ T Consensus 20 s~s~AA~~L~itqsavS~~i~~LE~~lg~~Lf~R~~~r~l~lT~~G~~l 68 (306) T 3fzv_A 20 SVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARF 68 (306) T ss_dssp SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHH T ss_conf 9999999989788899999999999849979998899853548768842 No 239 >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Probab=61.60 E-value=8.8 Score=18.54 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=24.7 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 8817887899998589878999999999887 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) |... +.+++++.++++...+.++++.+... T Consensus 67 ~~pr-t~~eia~~~~~~~k~i~~~~k~i~~~ 96 (200) T 1ais_B 67 KVPR-TLDEIADIARVDKKEIGRSYRFIARN 96 (200) T ss_dssp TCCC-CHHHHHHHTTSCHHHHHHHHHHHHHH T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 6886-68999999753498999999999999 No 240 >2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} SCOP: d.218.1.14 Probab=61.18 E-value=4.9 Score=20.22 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=47.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCC-CCCCH---HHHHHHHCCCH-HHHHHHHHHHHHCCEEE Q ss_conf 987777768889889999999999976498-------99888-17887---89999858987-89999999998879167 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGE-------WKGED-KLPSV---REMGVKLAVNP-NTVSRAYQELERAGYIY 68 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~-------l~~G~-~LPse---r~La~~~~VSr-~TVr~Al~~L~~~G~i~ 68 (125) ||+|++.+.+-.|-|.+.+...+..|..-- -..|+ .+|+. .-+==..+|.. .-+..+...|+.-|+.. T Consensus 1 ~~~~~v~l~~y~~~W~~~f~~e~~~L~~~l~~~~~~IeHIGSTsVpgl~AKpiIDI~v~V~~~~~~~~~~~~L~~lGy~~ 80 (173) T 2nrk_A 1 SNAMRVIVTEYQPAWVEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEIEKVDLLQWEFERIGYEY 80 (173) T ss_dssp ------CCBSCCTHHHHHHHHHHHHHHHHHGGGEEEEEEESGGGSTTCCBCSCEEEEEEESCSGGGGGGHHHHHHTTCEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEE T ss_conf 99747999769876799999999999985286420688756677489776863579987358276999999998638753 Q ss_pred ECC----CCEEEEC Q ss_conf 317----8336862 Q T0586 69 AKR----GMGSFVT 78 (125) Q Consensus 69 ~~~----g~G~~V~ 78 (125) ... ++..|+. T Consensus 81 ~~~~~~~~~~~~~~ 94 (173) T 2nrk_A 81 MGEFGLSGRRYLRK 94 (173) T ss_dssp CTTTTSTTEEEEEE T ss_pred CCCCCCCCCEEEEC T ss_conf 38888761023553 No 241 >1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, protein-DNA complex, , DNA binding protein/DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1 Probab=60.91 E-value=6.2 Score=19.54 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 1788789999858987899999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~ 60 (125) ..+|.++.|+.||||+++|..+... T Consensus 134 ~f~S~~eaa~~~gvs~~~Is~~~~g 158 (174) T 1u3e_M 134 EYPSTKCACEELGLTRGKVTDVLKG 158 (174) T ss_dssp EESCHHHHHHHHTCCHHHHHHHHHT T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 4689999999979898899999769 No 242 >3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} Probab=60.91 E-value=9.1 Score=18.46 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=37.3 Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH---CCEEEECCCCEEEECCCHHHHHHH Q ss_conf 88789999858987899999999988---791673178336862880789999 Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELER---AGYIYAKRGMGSFVTSDKALFDQL 87 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~---~G~i~~~~g~G~~V~~~~~~~~~~ 87 (125) -|.+.=|+.++||..+|.++++.|++ .-+. .+.|+|...++....+... T Consensus 18 gs~s~AA~~L~vsQpavS~~I~~LE~~lg~~LF-~R~~~~~~lT~~G~~l~~~ 69 (306) T 3hhg_A 18 GSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLL-NRTTRQLSLTEEGAQYFRR 69 (306) T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCE-ETTSSSCEECHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEE-EECCCCEEECHHHHHHHHH T ss_conf 999999999887989999999999999699999-9869956888636433378 No 243 >2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Probab=60.88 E-value=9.1 Score=18.46 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=39.3 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC--CEEEECCCCEEEECCCHHHHHHHHHH Q ss_conf 87899998589878999999999887--91673178336862880789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA--GYIYAKRGMGSFVTSDKALFDQLKKE 90 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~--G~i~~~~g~G~~V~~~~~~~~~~~~~ 90 (125) |...-|+.++||.+||.++++.|+++ --+..+.++|...++....+...... T Consensus 26 S~s~AA~~L~vsq~avS~~I~~LE~~lg~~LF~R~~~~~~lT~~G~~l~~~~~~ 79 (310) T 2esn_A 26 NVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAA 79 (310) T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 999999997879899999999999995994899879987456689999999999 No 244 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Probab=60.57 E-value=7.3 Score=19.07 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=40.6 Q ss_pred HHHHHHHCCC---CCCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 9999976498---9988-81788789999858987899999999988791673178336862 Q T0586 21 WMKKQMITGE---WKGE-DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 21 ~l~~~I~~G~---l~~G-~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) .|+..+..|. |..| +.+ |..+||+..|++..-+++-+..|...|+++...+ ++..+ T Consensus 31 ~l~~a~elglfd~L~~~~~p~-T~~eLA~~~g~~~~~l~rlL~~L~~~g~l~~~~~-~y~lt 90 (363) T 3dp7_A 31 VSRLMLKFGIFQLLSGKREGY-TLQEISGRTGLTRYAAQVLLEASLTIGTILLEED-RYVLA 90 (363) T ss_dssp HHHHHHHTTHHHHHHTCTTCB-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT-EEEEC T ss_pred HHHHHHHCCHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEECC T ss_conf 999999869698973399999-9999998759399999999999983890998599-99729 No 245 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=59.96 E-value=6.4 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 788789999858987899999999 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~ 60 (125) + |..++|+.+|||+++|+.-+++ T Consensus 42 l-s~~EIA~~lgiS~~~V~~~l~R 64 (113) T 1xsv_A 42 Y-SLSEIADTFNVSRQAVYDNIRR 64 (113) T ss_dssp C-CHHHHHHHTTCCHHHHHHHHHH T ss_pred C-CHHHHHHHHCCCHHHHHHHHHH T ss_conf 6-5999999989699999999999 No 246 >3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} Probab=59.82 E-value=9.4 Score=18.34 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=31.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 889889999999999976498998881788789999858987899999 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) ..+|-+.++...|+..=..-. | |..+||+.+|||+++|.+- T Consensus 7 ~~t~~~~~lg~~lk~~R~~~g------l-tq~elA~~lgvs~~~is~~ 47 (86) T 3eus_A 7 LRTPEHVYLCQRLRQARLDAG------L-TQADLAERLDKPQSFVAKV 47 (86) T ss_dssp SCSHHHHHHHHHHHHHHHHTT------C-CHHHHHHHTTCCHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCC------C-CHHHHHHHHCCCHHHHHHH T ss_conf 899799999999999999849------9-9999999979699999999 No 247 >2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} Probab=59.80 E-value=9.5 Score=18.34 Aligned_cols=41 Identities=5% Similarity=0.164 Sum_probs=28.5 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99999976498998881788789999858987899999999988 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ..+.+.|... +. ...+ +..+||+.+|+|+++..+.++.-.. T Consensus 6 ~~~~~~I~~~-~~-~~~~-sl~~lA~~~~~s~~~l~r~f~~~~g 46 (107) T 2k9s_A 6 REACQYISDH-LA-DSNF-DIASVAQHVCLSPSRLSHLFRQQLG 46 (107) T ss_dssp HHHHHHHHHT-SS-CSSC-CHHHHHHHTTSCHHHHHHHHHHHHS T ss_pred HHHHHHHHHH-CC-CCCC-CHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 9999999975-68-9997-9999999989299999999999989 No 248 >1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} Probab=59.62 E-value=9.3 Score=18.40 Aligned_cols=31 Identities=3% Similarity=0.042 Sum_probs=24.3 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 98998881788789999858987899999999 Q T0586 29 GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 29 G~l~~G~~LPser~La~~~~VSr~TVr~Al~~ 60 (125) .++.+..-| +..++++.+|+|++|+-+-.+. T Consensus 3 ~~~~~~~ll-~~keV~~~~g~srstiy~~~~~ 33 (66) T 1z4h_A 3 HELQPDSLV-DLKFIMADTGFGKTFIYDRIKS 33 (66) T ss_dssp CCCCSSSEE-CHHHHHHHHSSCHHHHHHHHHH T ss_pred CCCCCCCEE-CHHHHHHHHCCCHHHHHHHHHC T ss_conf 877756416-4999999979789998667318 No 249 >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Probab=59.09 E-value=1.8 Score=23.03 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=30.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 178878999985898789999999998879167317 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) +--|-.++|+..|+++.+++.++..++.+|...... T Consensus 42 ~~~~~~~~a~l~~~~~~~~~~~~~~~~~~g~~~~~~ 77 (403) T 3ez9_A 42 QTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKK 77 (403) T ss_dssp CCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEE T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 656799999735855777999987665446778854 No 250 >3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Probab=58.97 E-value=9.8 Score=18.25 Aligned_cols=40 Identities=8% Similarity=0.294 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 999999999976498998881788789999858987899999999988 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) .+|.++|...+ .+.+ +..+||+.+|+|+.+..+.++..-. T Consensus 5 ~rv~~~i~~~~-------~~~~-~l~~lA~~~~~s~~~l~r~fk~~~g 44 (108) T 3mn2_A 5 RQVEEYIEANW-------MRPI-TIEKLTALTGISSRGIFKAFQRSRG 44 (108) T ss_dssp HHHHHHHHHHT-------TSCC-CHHHHHHHHTCCHHHHHHHHHHHTS T ss_pred HHHHHHHHHCC-------CCCC-CHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 99999998744-------8999-9999999989199999999999989 No 251 >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, thermus themophilus; HET: NAD; 2.16A {Thermus thermophilus HB8} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* Probab=58.61 E-value=9.5 Score=18.31 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=41.8 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 9889999999999976498998881788789999858987899999999988791673178336862 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) .|+|.++-+++.+.- . ..+ |-.+||...|++.+.+|+-+..+...| .+|.|+-|. T Consensus 11 L~lY~~~L~~l~~~~---i----~~i-ss~~La~~~gi~~~~iRkdl~~fg~~g----~~~~Gy~v~ 65 (211) T 2dt5_A 11 LITYLRILEELEAQG---V----HRT-SSEQLGGLAQVTAFQVRKDLSYFGSYG----TRGVGYTVP 65 (211) T ss_dssp HHHHHHHHHHHHHTT---C----CEE-CHHHHHHHHTSCHHHHHHHHHHTTCCC----CTTTCEEHH T ss_pred HHHHHHHHHHHHHCC---C----EEE-EHHHHHHHHCCCHHHHHHHHHHHHHHH----CCEEEEEHH T ss_conf 899999999998658---8----698-599999996886887534599999974----240316899 No 252 >3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} Probab=58.43 E-value=5.3 Score=19.99 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=37.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 98777776888988999999999997649899888178878999985898789999 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125) ||||.-+-.+. -++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-. T Consensus 1 s~a~~~~~~~~---r~~Il~aa~~l~~~~G~---~~~-si~~Ia~~agvs~~t~Y~ 49 (196) T 3col_A 1 SNAMKKKDMNK---QVKIQDAVAAIILAEGP---AGV-STTKVAKRVGIAQSNVYL 49 (196) T ss_dssp ---------CH---HHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTSCHHHHHT T ss_pred CCCCCCCCHHH---HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHH T ss_conf 99777587899---99999999999997495---528-799999997909988858 No 253 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=58.16 E-value=7.9 Score=18.85 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=23.9 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHH----HHHHHHH Q ss_conf 9888178878999985898789999----9999988 Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125) Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~----Al~~L~~ 63 (125) ..|+.. |..++|+.||||+.-||+ |++.|.. T Consensus 34 ~~~~~~-Tl~eI~~~lgiSrerVRQie~~Al~kLr~ 68 (87) T 1tty_A 34 LDGKPK-TLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87) T ss_dssp TTSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHHHBT T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHC T ss_conf 899956-69999999698899999999999999876 No 254 >1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Probab=58.15 E-value=7.5 Score=19.00 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 788789999858987899999999 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~ 60 (125) + |..+.|+.+|+|++||+..+++ T Consensus 39 l-s~~EIA~~lgis~~~V~~~l~R 61 (113) T 1s7o_A 39 Y-SLAEIADEFGVSRQAVYDNIKR 61 (113) T ss_dssp C-CHHHHHHHHTCCHHHHHHHHHH T ss_pred H-HHHHHHHHHCCCHHHHHHHHHH T ss_conf 1-2999999989799999999999 No 255 >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 Probab=57.30 E-value=10 Score=18.07 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=30.9 Q ss_pred CHHHHHHHHCCCHHH-HHHHHHHHHHCCEEEECCCC Q ss_conf 878999985898789-99999999887916731783 Q T0586 39 SVREMGVKLAVNPNT-VSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 39 ser~La~~~~VSr~T-Vr~Al~~L~~~G~i~~~~g~ 73 (125) +-..||+.+|+...+ |.++|-.|+..|.|....+. T Consensus 27 tAl~lak~lgl~kakeVN~~LY~Lek~g~v~k~~~t 62 (79) T 1xmk_A 27 SALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTT 62 (79) T ss_dssp EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSS T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 399999994997267775999999975680017999 No 256 >2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622} Probab=56.98 E-value=11 Score=18.03 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=40.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH-CCEEEEC--CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 788789999858987899999999988-7916731--7833686288078999999999999999999999819999899 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELER-AGYIYAK--RGMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~-~G~i~~~--~g~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125) -.+..++|+.+|||..|+|.= +. .|++.-. .+.|+.+-.... +..+ ..+..-.+..|++..++ T Consensus 5 ~~~I~eva~~~gvs~~tlR~y----e~~~gl~~p~r~~~~g~R~Yt~~~-i~~l---------~~I~~l~~~~G~~l~ei 70 (81) T 2jml_A 5 TLRIRTIARMTGIREATLRAW----ERRYGFPRPLRSEGNNYRVYSREE-VEAV---------RRVARLIQEEGLSVSEA 70 (81) T ss_dssp CEEHHHHHHTTSTTHHHHHHH----HHHTCCSCCBSSSCSSSCEECHHH-HHHH---------HHHHHHHHHTSTHHHHH T ss_pred EEEHHHHHHHHCCCHHHHHHH----HHHCCCCCCCEECCCCCEECCHHH-HHHH---------HHHHHHHHHCCCCHHHH T ss_conf 355999999988499999999----981699998325899864549999-9999---------99999999869989999 Q ss_pred HHHHHH Q ss_conf 999999 Q T0586 114 IELLIK 119 (125) Q Consensus 114 ~~l~~~ 119 (125) ..++.. T Consensus 71 ~~~l~~ 76 (81) T 2jml_A 71 IAQVKT 76 (81) T ss_dssp HHHHHH T ss_pred HHHHHC T ss_conf 999862 No 257 >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Probab=56.88 E-value=8.4 Score=18.67 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=27.2 Q ss_pred CCCCCC--CCCCCHHHHHHHHCCCHH-----HHHHHHHHHHHCC Q ss_conf 989988--817887899998589878-----9999999998879 Q T0586 29 GEWKGE--DKLPSVREMGVKLAVNPN-----TVSRAYQELERAG 65 (125) Q Consensus 29 G~l~~G--~~LPser~La~~~~VSr~-----TVr~Al~~L~~~G 65 (125) |.|+.| .++ |.++-.+.|||+++ .|++||+.|...- T Consensus 1 ~~~~gG~~~~M-s~~eA~~iLgl~~~a~t~~~Ik~ayr~la~~~ 43 (71) T 2guz_A 1 GFLKGGFDPKM-NSKEALQILNLTENTLTKKKLKEVHRKIMLAN 43 (71) T ss_dssp CCCCSCCCSSC-CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCC-CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 98788888887-99999998189999789999999999999988 No 258 >3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} Probab=56.39 E-value=4.7 Score=20.34 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 1788789999858987899999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~A 57 (125) -+ |..+||+.+|||+.||.+- T Consensus 24 gl-tQ~elA~~lgvs~~tv~~w 44 (73) T 3fmy_A 24 SL-TQKEASEIFGGGVNAFSRY 44 (73) T ss_dssp TC-CHHHHHHHHCSCTTHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHHH T ss_conf 99-9999999979899999999 No 259 >2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} Probab=56.12 E-value=11 Score=17.94 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=25.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 999999997649899888178878999985898789999999 Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) +.+.|+...... .+ |..+||+.+|||++|+.+-.. T Consensus 10 f~~~Lk~lr~~~------g~-tq~elA~~lgvs~~~i~~~E~ 44 (94) T 2kpj_A 10 FSENLNSYIAKS------EK-TQLEIAKSIGVSPQTFNTWCK 44 (94) T ss_dssp HHHHHHHHHTTS------SS-CHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHC------CC-CHHHHHHHHHHCCHHHHHHHH T ss_conf 999999999990------99-999999988530056788760 No 260 >2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A Probab=56.07 E-value=6.7 Score=19.32 Aligned_cols=36 Identities=6% Similarity=-0.046 Sum_probs=25.2 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 817887899998589878999999999887916731 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .+-|+..++|+.+|++...++...........+... T Consensus 283 gr~pt~eeiA~~l~~~~~~~~~~~~~~~~~~~~SLd 318 (423) T 2a6h_F 283 GREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 318 (423) T ss_dssp SSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCEESS T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 899847899988435412999999999728874276 No 261 >2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17 Probab=55.59 E-value=6.6 Score=19.38 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.4 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 888178878999985898789999 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSR 56 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~ 56 (125) .|++. +..++|+++||||+|.-+ T Consensus 45 ~~~kk-T~~eiAeEvGisr~tLy~ 67 (155) T 2ao9_A 45 NEEKR-TQDEMANELGINRTTLWE 67 (155) T ss_dssp -CCCC-CHHHHHHHHTCCHHHHHH T ss_pred CHHHH-HHHHHHHHHCHHHHHHHH T ss_conf 56675-799999995746999998 No 262 >1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B Probab=55.47 E-value=11 Score=17.87 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=34.0 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC-C--EEEECC----CCEEEECCCHHHH Q ss_conf 87899998589878999999999887-9--167317----8336862880789 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA-G--YIYAKR----GMGSFVTSDKALF 84 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~-G--~i~~~~----g~G~~V~~~~~~~ 84 (125) |...=|+.+|+|..+|.++++.|+++ | +.++.. +.|+..++....+ T Consensus 36 S~t~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~~~~~~LT~~Ge~l 88 (265) T 1b9m_A 36 SISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRL 88 (265) T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEHHHHHH T ss_conf 99999999698999999999999986198579995466678625872889999 No 263 >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum} Probab=54.23 E-value=8.3 Score=18.70 Aligned_cols=23 Identities=9% Similarity=0.352 Sum_probs=20.7 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 89878999999999887916731 Q T0586 48 AVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 48 ~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .+|.+|+=.+++.|+++|+|... T Consensus 44 ~~s~gtlY~~L~rLe~~G~I~~~ 66 (117) T 3elk_A 44 ALPQGSIYILLKTMKERGFVISE 66 (117) T ss_dssp CCCTTHHHHHHHHHHHHTSEEEE T ss_pred CCCCCCHHHHHHHHHHCCCEEEE T ss_conf 99975489999999988986999 No 264 >3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} Probab=53.77 E-value=12 Score=17.70 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=24.4 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC Q ss_conf 178878999985898789999999998879 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAG 65 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G 65 (125) .| +..+||+.+|+|+.++.+.++...... T Consensus 19 ~l-~l~~lA~~~~~s~~~l~r~fk~~~g~s 47 (103) T 3lsg_A 19 QF-TLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103) T ss_dssp TC-CHHHHHHHTTCCHHHHHHHHHHHHSSC T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHCCC T ss_conf 98-999999998919999999999988919 No 265 >1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Probab=53.54 E-value=12 Score=17.67 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCEEEECC-CCEEEECC Q ss_conf 8999999999997649899888178878999985----898789999999998879167317-83368628 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKL----AVNPNTVSRAYQELERAGYIYAKR-GMGSFVTS 79 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~----~VSr~TVr~Al~~L~~~G~i~~~~-g~G~~V~~ 79 (125) .|-+++.+|.+-...-.=..|--+ +..+|-..+ +||+.-+.+|.+.|+.-|.....+ |.-.+|.. T Consensus 91 FY~eLavqIvEvC~~tr~~nGGli-~L~dl~~~~nr~r~iS~~Di~~Ai~~L~~Lgg~~v~~v~g~~~V~s 160 (233) T 1u5t_A 91 FYYEVCLKVIEICRQTKDMNGGVI-SFQELEKVHFRKLNVGLDDLEKSIDMLKSLECFEIFQIRGKKFLRS 160 (233) T ss_dssp HHHHHHHHHHHHHHHHTTTSSSCE-EHHHHHHTTTTTTTCCHHHHHHHHHHHTTTCCCCEEEETTEEEECC T ss_pred HHHHHHHHHHHHHHHHHHHCCCEE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEE T ss_conf 999999999999999998769833-7999999998735899999999999987342866999899999981 No 266 >1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2 Probab=53.44 E-value=4.5 Score=20.44 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=23.5 Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHH----HHHHHH Q ss_conf 99888178878999985898789999----999998 Q T0586 31 WKGEDKLPSVREMGVKLAVNPNTVSR----AYQELE 62 (125) Q Consensus 31 l~~G~~LPser~La~~~~VSr~TVr~----Al~~L~ 62 (125) +..++.+ +..++|+.||||+..||+ |+..|. T Consensus 33 l~~~~~~-tl~ei~~~lgvSrerVRQie~~Al~kLr 67 (81) T 1tlh_B 33 IDMNTDY-TLEEVGKQFDVTRERIRQIEAKALRKLR 67 (81) T ss_dssp CCTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred CCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 8988756-6999999989789999999999999985 No 267 >2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Probab=53.20 E-value=12 Score=17.64 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 999999999997649899888178878999985898789999999 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) -.++...|+.....-. | |..+||+..|||++||.+-.+ T Consensus 16 r~~l~~~ir~~R~~~g------l-Tq~elA~~~Gis~~~is~iE~ 53 (83) T 2a6c_A 16 RSQLLIVLQEHLRNSG------L-TQFKAAELLGVTQPRVSDLMR 53 (83) T ss_dssp HHHHHHHHHHHHHTTT------C-CHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCC------C-CHHHHHHHHHCCHHHHHHHHC T ss_conf 9999999999999969------9-889999998557635558862 No 268 >2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A Probab=53.17 E-value=9.4 Score=18.36 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.2 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 78878999985898789999999 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~ 59 (125) | |..+||+.+|||++|+.+-.+ T Consensus 22 l-sq~~lA~~lgvs~~~is~ie~ 43 (94) T 2ict_A 22 V-SLREFARAMEIAPSTASRLLT 43 (94) T ss_dssp C-CHHHHHHHHTCCHHHHHHHHH T ss_pred C-CHHHHHHHHCCCHHHHHHHHH T ss_conf 9-999999996877588999984 No 269 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Probab=52.27 E-value=12 Score=17.54 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=31.4 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 87899998589878999999999887916731783 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) |..+||+..|++...+++-+..|...|++...... T Consensus 51 t~~eLA~~~g~~~~~l~rlLr~L~a~gll~~~~~~ 85 (374) T 1qzz_A 51 TLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQ 85 (374) T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC- T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCC T ss_conf 99999988591989999999999878936875788 No 270 >1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5 Probab=52.23 E-value=6.7 Score=19.33 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=24.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC-CEE Q ss_conf 8789999858987899999999988791673178-336 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGS 75 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g-~G~ 75 (125) +-++||+.||||..||.+= ..+|+=....| +|. T Consensus 4 nk~qlA~ifgVS~~Tit~W----~~~G~Pv~~~GgkG~ 37 (68) T 1j9i_A 4 NKKQLADIFGASIRTIQNW----QEQGMPVLRGGGKGN 37 (68) T ss_dssp EHHHHHHHTTCCHHHHHHH----TTTTCCCSSCCCSSS T ss_pred CHHHHHHHHCCCHHHHHHH----HHCCCCEECCCCCCC T ss_conf 7999999979888999999----987998351798985 No 271 >2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Probab=51.63 E-value=11 Score=17.95 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.9 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) |-+++|+.+|+|..||+.-+..+-. T Consensus 15 s~~eIA~~l~iS~~TV~~~~~~i~~ 39 (61) T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMMR 39 (61) T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999998969999999999999999 No 272 >1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12 Probab=51.56 E-value=9 Score=18.48 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=16.3 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 78999985898789999999998 Q T0586 40 VREMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 40 er~La~~~~VSr~TVr~Al~~L~ 62 (125) ..+-|+.+|+||+|+++=++.+. T Consensus 67 ~~~AA~~LGisR~TL~~Klk~~g 89 (91) T 1ntc_A 67 KQEAARLLGWGAATLTAKLKELG 89 (91) T ss_dssp TTHHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99999997989999999999878 No 273 >2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=50.95 E-value=13 Score=17.41 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=40.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 999999999976498998881788789999858987899999999988791673178 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125) ..||..|.+.=-.|.| .+++-...|+..++|.++++.|+..++|-.... T Consensus 40 ~lVY~~Ie~aGn~GIW--------tkdIr~ktnL~~~~l~K~LK~LEsk~lIKsVks 88 (95) T 2yu3_A 40 KLVYQIIEDAGNKGIW--------SRDVRYKSNLPLTEINKILKNLESKKLIKAVKS 88 (95) T ss_dssp HHHHHHHHHHTTSCEE--------HHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECC T ss_pred HHHHHHHHHCCCCCEE--------HHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECC T ss_conf 9999999971767654--------999998809988999999999863488362112 No 274 >2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1 Probab=50.45 E-value=8.5 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.7 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 881788789999858987899999 Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 34 G~~LPser~La~~~~VSr~TVr~A 57 (125) ---| |..+||+.+|||+.||.+- T Consensus 101 r~Gl-tQ~~lA~~lGvs~~ti~~~ 123 (170) T 2auw_A 101 RNNL-SLTTAAEALGISRRMVSYY 123 (170) T ss_dssp HTTC-CHHHHHHHHTSCHHHHHHH T ss_pred HCCC-CHHHHHHHHCCCHHHHHHH T ss_conf 8599-9999999949999999999 No 275 >2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} Probab=50.24 E-value=12 Score=17.71 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=19.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 1788789999858987899999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~ 60 (125) -+ |..+.|+.+|+|.+||+.-+.+ T Consensus 31 g~-s~~EIA~~l~is~~tvk~~l~r 54 (70) T 2o8x_A 31 GL-SYADAAAVCGCPVGTIRSRVAR 54 (70) T ss_dssp CC-CHHHHHHHHTSCHHHHHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHH T ss_conf 99-9999999989799999999999 No 276 >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Probab=49.87 E-value=14 Score=17.30 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=40.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf 9999999999764989988817887899998589878999999999887916731783 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125) ..||..|...=-.|.| .++|....|+..++|.++++.|+..++|-..+.. T Consensus 23 ~lVY~~I~~aG~~GIW--------~kdIr~ktnL~~~~l~K~LK~Lesk~lIK~VksV 72 (91) T 2dk5_A 23 KLVYQIIEDAGNKGIW--------SRDVRYKSNLPLTEINKILKNLESKKLIKAVKSV 72 (91) T ss_dssp HHHHHHHHHHCTTCEE--------HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS T ss_pred HHHHHHHHHCCCCCEE--------HHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCC T ss_conf 9999999970656624--------9999987399889999999999726880443255 No 277 >3f8l_A GNTR-family protein transcriptional regulator; PHNF, HUTC, UTRA, DNA- binding, transcription regulation; 1.90A {Mycobacterium smegmatis} Probab=49.16 E-value=2.7 Score=21.87 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=18.2 Q ss_pred HHHHHHHH-HHHCCEEEECCCCEEEECCCH Q ss_conf 99999999-988791673178336862880 Q T0586 53 TVSRAYQE-LERAGYIYAKRGMGSFVTSDK 81 (125) Q Consensus 53 TVr~Al~~-L~~~G~i~~~~g~G~~V~~~~ 81 (125) |+-+|..+ |+.+|++.++.|+|+||.... T Consensus 2 ~~~~~~~~~le~~~l~~~~g~~g~~v~~~~ 31 (201) T 3f8l_A 2 SYYHHHHHHLESTSLYKKAGFENLYFQGSG 31 (201) T ss_dssp ------------------------------ T ss_pred CEECCCCCEECCCCCEEEECCCCEEEECCC T ss_conf 453254102512751999779988997980 No 278 >2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} Probab=49.09 E-value=11 Score=17.81 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=24.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCE Q ss_conf 8789999858987899999999988791 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGY 66 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~ 66 (125) |..+.|..||||.+|++.=++.....+- T Consensus 32 ~~~~VA~~LGI~~~tL~~Wv~~~~~~~~ 59 (108) T 2rn7_A 32 TICSIAPKIGCTPETLRVWVRQHERDTG 59 (108) T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHTTSC T ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCC T ss_conf 5999998829999999999999720235 No 279 >3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Probab=48.65 E-value=14 Score=17.21 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=26.6 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 99999764989988817887899998589878999999999887 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) .+...+..|. |.+++|+.+++|..||+.-+..+-.. T Consensus 34 eVl~ll~~G~--------s~~eIA~~L~iS~~TV~~~~~~i~~K 69 (95) T 3c57_A 34 TLLGLLSEGL--------TNKQIADRMFLAEKTVKNYVSRLLAK 69 (95) T ss_dssp HHHHHHHTTC--------CHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999279--------99999989796999999999999999 No 280 >2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3 Probab=48.51 E-value=9.8 Score=18.25 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.3 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 81788789999858987899999 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~A 57 (125) --| |..+||+.+|||+.||.+- T Consensus 42 ~gl-tQ~~lA~~lgvs~~ti~~~ 63 (99) T 2ppx_A 42 LKL-TQEEFSARYHIPLGTLRDW 63 (99) T ss_dssp TTC-CHHHHHHHHTCCHHHHHHH T ss_pred CCC-CHHHHHHHHCCCHHHHHHH T ss_conf 599-9999998939989999999 No 281 >1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Probab=48.22 E-value=10 Score=18.07 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=35.7 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE---CCCCEEEECCC Q ss_conf 81788789999858987899999999988791673---17833686288 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA---KRGMGSFVTSD 80 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~---~~g~G~~V~~~ 80 (125) .|+-...+||.+||+...-+.+-++.|+.+|.|.- -+|+-.|+++. T Consensus 19 ~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s 67 (72) T 1wi9_A 19 SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72) T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS T ss_pred CCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCC T ss_conf 7876399999880996799999999999879865578589887997589 No 282 >2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} Probab=48.14 E-value=5.2 Score=20.02 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=23.4 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999976498998881788789999858987899999 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) .|-..|..-.....-.| |..+||+.+|||+++|.+- T Consensus 34 ~ig~~i~~~R~~~~kgl-TQ~eLA~~~gvs~~~is~~ 69 (107) T 2jvl_A 34 EVGKAIEQGRQKFEPTM-TQAELGKEIGETAATVASY 69 (107) T ss_dssp HHHHHHHHHHTTSSSCC-CHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHH T ss_conf 99999999999988699-8999999989889999999 No 283 >1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 Probab=48.02 E-value=13 Score=17.34 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.2 Q ss_pred HHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 8589878999999999887916731 Q T0586 46 KLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 46 ~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) ..++|.++|=.+++.|+++|+|... T Consensus 32 ~w~~s~g~IY~~L~rLe~~GlI~~~ 56 (179) T 1yg2_A 32 FWKASHQQVYRELNKMGEQGLVTCV 56 (179) T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEC T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 4179978199999999977974788 No 284 >3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} Probab=47.77 E-value=15 Score=17.09 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=34.4 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 987777768-8898899999999999764989988817887899998589878999 Q T0586 1 SNAMNPTFH-ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVS 55 (125) Q Consensus 1 ~~~M~~~~~-~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr 55 (125) ||+|.-.=. +..-.-++|.+.-...+....| +.+ |.+++|+..|||+.|+- T Consensus 1 ~~~M~r~r~~~~~~~r~~Il~aa~~l~~~~G~---~~~-t~~~Ia~~agvs~~t~Y 52 (203) T 3ccy_A 1 SNAMARTRSADYENIRDTIIERAAAMFARQGY---SET-SIGDIARACECSKSRLY 52 (203) T ss_dssp -----------CTTHHHHHHHHHHHHHHHTCT---TTS-CHHHHHHHTTCCGGGGT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHH T ss_conf 99999999888899999999999999997494---528-89999998790987886 No 285 >1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A Probab=47.34 E-value=15 Score=17.05 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=31.9 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 88999999999997649899888178878999985898789999999998 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125) |........+...+..-. .++.+ |..+||+.+|+|+.+.++.++.-- T Consensus 72 ~~~~~~~~~v~~a~~~~~--~~~~~-sl~~lA~~~g~S~~~l~R~Fk~~~ 118 (133) T 1u8b_A 72 NPRQHRLDKITHACRLLE--QETPV-TLEALADQVAMSPFHLHRLFKATT 118 (133) T ss_dssp CHHHHHHHHHHHHHHHTC--SSSCC-CHHHHHHHHTSCHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHH--CCCCC-CHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 511567899999999972--36999-999995471999899999999998 No 286 >1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2 Probab=47.15 E-value=15 Score=17.03 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 999999999764989988817887899998589878999999999887 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) .|.+++.+.|...- .+.| +..+||+.+|+|+.+.++.++..... T Consensus 3 ~~i~~~~~~i~~~~---~~~~-~l~~la~~~~~s~~~l~r~f~~~~g~ 46 (292) T 1d5y_A 3 GIIRDLLIWLEGHL---DQPL-SLDNVAAKAGYSKWHLQRMFKDVTGH 46 (292) T ss_dssp HHHHHHHHHHHTTS---SSSC-CCHHHHTTTSSCHHHHHHHHHHHHSS T ss_pred HHHHHHHHHHHHHC---CCCC-CHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 89999999999705---8999-99999999893999999999998891 No 287 >1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A* Probab=46.52 E-value=8 Score=18.81 Aligned_cols=42 Identities=12% Similarity=-0.010 Sum_probs=27.5 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 889999999999976498998881788789999858987899999 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) |...+.+..|...|..-.-..| | |..+||+.+|||++|+.+- T Consensus 9 ~~~~~~~~~l~~~l~~~R~~~g--l-tQ~elA~~lGis~~~is~~ 50 (92) T 1lmb_3 9 QEQLEDARRLKAIYEKKKNELG--L-SQESVADKMGMGQSGVGAL 50 (92) T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--C-CHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCC--C-CHHHHHHHHCCCHHHHHHH T ss_conf 8999999999999999999929--9-9999998888788579999 No 288 >2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP} Probab=46.21 E-value=11 Score=17.98 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=34.6 Q ss_pred HHH-HHHHHHHHCCCCCCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 999-999999764989988817887899998---589878999999999887916731 Q T0586 17 QIS-DWMKKQMITGEWKGEDKLPSVREMGVK---LAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 17 qI~-~~l~~~I~~G~l~~G~~LPser~La~~---~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .++ -+|...+..+.. -|-.| .+.|.+. +.+|..|+=.+++.|+++|+|... T Consensus 43 el~~~yIL~lL~~~~~-yGYeI--~q~L~~~~g~~~is~GtLYp~L~RLE~~GlI~s~ 97 (148) T 2zfw_A 43 ELAVCYVLAVLRHEDS-YGTEL--IQHLETHWPNYRLSDTVLYTALKFLEDEQIISGY 97 (148) T ss_dssp HHHHHHHHHHHTTCCE-EHHHH--HHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEE T ss_pred HHHHHHHHHHHCCCCC-CHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 8899999999807999-89999--9999998299777864379999999988984888 No 289 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Probab=46.15 E-value=15 Score=16.93 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=32.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 878999985898789999999998879167317833686 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) |..+||+..|++...+++-+..|...|++.... .|.|. T Consensus 43 t~~eLA~~~g~~~~~l~~lL~~L~~~gll~~~~-~~~y~ 80 (334) T 2ip2_A 43 SDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT-RDGYA 80 (334) T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TTEEE T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECC-CCEEE T ss_conf 999999886919899999999999789804317-75473 No 290 >1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Probab=46.12 E-value=16 Score=16.92 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=25.9 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99999976498998881788789999858987899999999988 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ..+...+..| + |..++|..+|+|..||+.-+..+-. T Consensus 17 ~~vl~~~~~G-------~-s~~eIA~~l~is~~TV~~~~~~i~~ 52 (74) T 1fse_A 17 REVFELLVQD-------K-TTKEIASELFISEKTVRNHISNAMQ 52 (74) T ss_dssp HHHHHHHTTT-------C-CHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999999927-------9-9999999968987799999999999 No 291 >2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 Probab=46.08 E-value=16 Score=16.92 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 89999999999976498998881788789999858987899999 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) +-..+...|+....... + |..+||+.+|||++|+.+- T Consensus 7 ~~~~~g~~ir~~R~~~g------l-tq~~lA~~~gvs~~~i~~~ 43 (77) T 2b5a_A 7 IKRKFGRTLKKIRTQKG------V-SQEELADLAGLHRTYISEV 43 (77) T ss_dssp HHHHHHHHHHHHHHHTT------C-CHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHC------C-CHHHHHHHHCCCHHHHHHH T ss_conf 99999999999999809------9-9999998969799999999 No 292 >2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} Probab=45.90 E-value=11 Score=17.89 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 178878999985898789999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~ 59 (125) -| |..+||+.+|||+.|+.+-++ T Consensus 24 gl-sq~eLA~~lGvs~~~is~i~~ 46 (113) T 2eby_A 24 DL-KINELAELLHVHRNSVSALIN 46 (113) T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHT T ss_pred CC-CHHHHHHHHCCCHHHHHHHHH T ss_conf 99-999999995999999999982 No 293 >3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus} Probab=45.89 E-value=16 Score=16.90 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=44.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH---HHHCCEEEECCCCEEEEC Q ss_conf 89999999999976498998881788789999858987899999999---988791673178336862 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE---LERAGYIYAKRGMGSFVT 78 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~---L~~~G~i~~~~g~G~~V~ 78 (125) +...|-.+|+..+... +.|.-----.+||++|++.|+-+.-+++- .+.-=+|++++|-|=|+. T Consensus 3 lSDiIE~yiK~~L~~s--~~~~ieI~R~elA~~F~CvPSQINYVl~TRFT~e~GY~VESkRGGGGyIR 68 (155) T 3h0d_A 3 ISDIIEQYLKQVLNMS--DQDIVEIKRSEIANKFRCVPSQINYVINTRFTLERGYIVESKRGGGGYIR 68 (155) T ss_dssp HHHHHHHHHHHHHTTS--SSSEEEECHHHHHHHTTSCTHHHHHHHHHHSSGGGTEEEEEECSTTCEEE T ss_pred HHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEE T ss_conf 5799999999999748--79939962798898469674116166525515888859986428985599 No 294 >3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} Probab=45.49 E-value=11 Score=17.82 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 78878999985898789999999 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~ 59 (125) | |..+||+.+|||+.|+.+-.+ T Consensus 32 l-sq~eLA~~lGis~~~is~ie~ 53 (104) T 3cec_A 32 I-NTANFAEILGVSNQTIQEVIN 53 (104) T ss_dssp C-CHHHHHHHHTSCHHHHHHHHT T ss_pred C-CHHHHHHHHCCCHHHHHHHHC T ss_conf 9-899999996867999999982 No 295 >3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis} Probab=45.29 E-value=16 Score=16.90 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.4 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 1788789999858987899999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~ 60 (125) -+ |.+++|..+|+|.+||+.-+.+ T Consensus 53 ~~-s~~EIA~~lgis~~~v~~~~~r 76 (92) T 3hug_A 53 GW-STAQIATDLGIAEGTVKSRLHY 76 (92) T ss_dssp CC-CHHHHHHHHTSCHHHHHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHH T ss_conf 99-9999999989699999999999 No 296 >3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} Probab=45.13 E-value=8.4 Score=18.69 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=36.3 Q ss_pred CCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 987777768889-889999999999976498998881788789999858987899999 Q T0586 1 SNAMNPTFHADK-PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 1 ~~~M~~~~~~~~-Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) ||||.-.-..+. -..++|.+.-.+.+....| +.+ |.+++|+..|||+.++-.- T Consensus 1 ~~aMpr~~~~~~~~tr~~Il~aa~~l~~~~G~---~~~-ti~~Ia~~agvs~~~lY~y 54 (156) T 3ljl_A 1 SNAMPKRSKEDTEITIQKIMDAVVDQLLRLGY---DKM-SYTTLSQQTGVSRTGISHH 54 (156) T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHTHH---HHC-CHHHHHHHHTCCHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHH T ss_conf 99999998537999999999999999987190---207-7999999868886089888 No 297 >3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Probab=44.04 E-value=16 Score=16.85 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.3 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 7899998589878999999999887916731 Q T0586 40 VREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 40 er~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) ..+||+.|+||.+.+-..|..|...+.+..- T Consensus 164 i~~LA~rF~VS~eAa~~Rl~el~~~p~~~v~ 194 (301) T 3dte_A 164 LAELARRADVSATSALYALAERTAPPVIYAV 194 (301) T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCCSCEEEEE T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 9999998198699999999856688847876 No 298 >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} Probab=43.98 E-value=15 Score=17.04 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=33.0 Q ss_pred CCCCCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHH Q ss_conf 7777688898--899999999999764989988817887899998589-87899999 Q T0586 4 MNPTFHADKP--IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV-NPNTVSRA 57 (125) Q Consensus 4 M~~~~~~~~P--ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~V-Sr~TVr~A 57 (125) |..+-...+| +-..+.+.|-+.|..|. |.+++|...|| |++|+.+= T Consensus 4 ma~~~k~GRptk~t~e~~e~I~~~i~~G~--------sl~~i~~~~gvps~sTl~rW 52 (143) T 3hef_A 4 MATEPKAGRPSDYMPEVADDICSLLSSGE--------SLLKVCKRPGMPDKSTVFRW 52 (143) T ss_dssp ---------CCSCCHHHHHHHHHHHHTTC--------CHHHHHTSTTCCCHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCC--------CHHHHHHCCCCCCHHHHHHH T ss_conf 66899999997689999999999998798--------79999872799968999999 No 299 >1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 Probab=43.95 E-value=17 Score=16.71 Aligned_cols=37 Identities=14% Similarity=0.412 Sum_probs=27.4 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 999999997649899888178878999985898789999999998 Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125) ++..+...+..| .|..++|+.+|.|+++|++-+..|. T Consensus 41 ~A~~~~~l~~~g--------~t~~eiA~~lg~s~s~v~~~l~l~~ 77 (178) T 1r71_A 41 IADFIGRELAKG--------KKKGDIAKEIGKSPAFITQHVTLLD 77 (178) T ss_dssp HHHHHHHHHHTT--------CCHHHHHHHHTCCHHHHHHHHGGGS T ss_pred HHHHHHHHHHCC--------CCHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 999999999838--------9899999998889999999999806 No 300 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Probab=43.95 E-value=17 Score=16.71 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=33.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 178878999985898789999999998879167317833686 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) .+ |..+||+..|+++.-+++-+..|...|++....| .|. T Consensus 64 p~-T~~eLA~~~g~~~~~l~rlL~~L~~~g~l~~~~g--~y~ 102 (359) T 1x19_A 64 PK-DLATLAADTGSVPPRLEMLLETLRQMRVINLEDG--KWS 102 (359) T ss_dssp CB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--EEE T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC--EEE T ss_conf 99-9999998879099999999999987796896699--785 No 301 >2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation, two-component regulatory system; NMR {Bacillus subtilis} Probab=42.68 E-value=17 Score=16.58 Aligned_cols=35 Identities=9% Similarity=0.227 Sum_probs=26.4 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 9999976498998881788789999858987899999999988 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) .+...+..| + |-.++|..+++|..||+.-+..+-. T Consensus 19 ~vl~~l~~G-------~-t~~eIA~~l~iS~~TV~~~~~~i~~ 53 (73) T 2krf_A 19 LILQEVEKG-------F-TNQEIADALHLSKRSIEYSLTSIFN 53 (73) T ss_dssp HHHHHHHTT-------S-CHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999948-------9-9999987868887899999999999 No 302 >1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 Probab=42.65 E-value=14 Score=17.29 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=9.3 Q ss_pred CHHHHHHHHCCCHHHHHH Q ss_conf 878999985898789999 Q T0586 39 SVREMGVKLAVNPNTVSR 56 (125) Q Consensus 39 ser~La~~~~VSr~TVr~ 56 (125) |..+||+..|||++|+.+ T Consensus 16 sq~eLa~~~gis~~~is~ 33 (111) T 1b0n_A 16 SLSELAEKAGVAKSYLSS 33 (111) T ss_dssp CHHHHHHHHTCCHHHHHH T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 999998786989999999 No 303 >3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A Probab=42.09 E-value=18 Score=16.53 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=46.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHH Q ss_conf 98899999999999764989988817887899998589878999999999887916731783368628807899999999 Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKEL 91 (125) Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~ 91 (125) ..+...|...|+.......| |..+||+.+|||++|+.+--+ |- ..| . T Consensus 23 ~~l~~~ig~~lk~lR~~~gl-------Sq~elA~~~gis~~~is~iE~-----G~--~~p---------s---------- 69 (99) T 3g5g_A 23 SFLLSKVSFVIKKIRLEKGM-------TQEDLAYKSNLDRTYISGIER-----NS--RNL---------T---------- 69 (99) T ss_dssp CHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHT-----TC--SCC---------B---------- T ss_pred HHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHCCCHHHHHHHHC-----CC--CCC---------C---------- T ss_conf 99999999999999999099-------999999998959999999981-----57--899---------9---------- Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 9999999999999819999899999999986159 Q T0586 92 ADAITERFLEEAKSIGLDDQTAIELLIKRSRNHE 125 (125) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E 125 (125) ...+..-+..++++.++++....+..-.|| T Consensus 70 ----~~~l~~ia~~l~v~~~~l~~~~~~ei~k~d 99 (99) T 3g5g_A 70 ----IKSLELIMKGLEVSDVVFFEMLIKEILKHD 99 (99) T ss_dssp ----HHHHHHHHHHTTCCHHHHHHHHHHHHHC-- T ss_pred ----HHHHHHHHHHHCCCHHHHHCCCHHHHHCCC T ss_conf ----999999999969989999760489883679 No 304 >1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1 Probab=42.09 E-value=14 Score=17.15 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 87899998589878999999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQEL 61 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L 61 (125) +..++|+.+|+|+++|++.+..+ T Consensus 136 ~~~~iA~~~G~s~~~V~~~l~L~ 158 (230) T 1vz0_A 136 TQEEVARRVGKARSTVANALRLL 158 (230) T ss_dssp CHHHHHHHHTCCHHHHHHHHHGG T ss_pred HHHHHHHHCCCCHHHHHHHHHHH T ss_conf 29999987599999985677664 No 305 >1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 Probab=41.71 E-value=18 Score=16.49 Aligned_cols=37 Identities=5% Similarity=0.048 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 99999999999764989988817887899998589878999999 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) +.++...|+..-....| |..+||+..|||+.|+.+-- T Consensus 11 ~~~ig~~lk~~R~~~gl-------tq~~lA~~~gis~~~i~~~E 47 (74) T 1y7y_A 11 LVKFGQRLRELRTAKGL-------SQETLAFLSGLDRSYVGGVE 47 (74) T ss_dssp HHHHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-------CHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999998099-------99999989896999999998 No 306 >2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61 Probab=41.54 E-value=18 Score=16.47 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 89878999999999887916731 Q T0586 48 AVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 48 ~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .+|.+|+=.+++.|+++|+|... T Consensus 46 ~~~~gtiY~~L~rLe~~GlI~~~ 68 (118) T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTE 68 (118) T ss_dssp CCCCCCHHHHHHHHHHTTSEEEE T ss_pred CCCCCCHHHHHHHHHHCCCEEEE T ss_conf 68978389999999988985998 No 307 >2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* Probab=41.49 E-value=15 Score=17.10 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 999999999764989988817887899998589878999999 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) ++...|+..=.. -.| |..+||+..|||+.++.+-- T Consensus 12 ~lg~~lr~~R~~------~gl-sq~~lA~~~gvs~~~is~~E 46 (88) T 2wiu_B 12 QLANAMKLVRQQ------NGW-TQSELAKKIGIKQATISNFE 46 (88) T ss_dssp HHHHHHHHHHHH------TTC-CHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHH------CCC-CHHHHHHHCCCCHHHHHHHH T ss_conf 999999999998------599-99999786399899999998 No 308 >1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=41.00 E-value=19 Score=16.42 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=34.4 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 888988999999999997649899888178878999985898789999 Q T0586 9 HADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125) Q Consensus 9 ~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125) ..+.+.+++|.+.-.+.+....| +.. |.+++|+.-|||+.|+-. T Consensus 4 ~~~~~~~~~Il~aA~~l~~~~G~---~~~-s~~~IA~~agvs~~t~Y~ 47 (206) T 1vi0_A 4 KQKRPKYMQIIDAAVEVIAENGY---HQS-QVSKIAKQAGVADGTIYL 47 (206) T ss_dssp ----CHHHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTSCHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHH T ss_conf 64489999999999999998393---407-799999995988757986 No 309 >1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A Probab=40.86 E-value=11 Score=17.93 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 878999985898789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125) |.++|+.+.|+|.+|++.|+. T Consensus 24 sLa~lsr~~Gls~stl~nal~ 44 (74) T 1neq_A 24 SLSALSRQFGYAPTTLANALE 44 (74) T ss_dssp CHHHHHHHHSSCHHHHHHTTT T ss_pred CHHHHHHHHCCCHHHHHHHHC T ss_conf 799999990998789999883 No 310 >1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2 Probab=40.80 E-value=19 Score=16.40 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=19.4 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) |..++|+.+++|..||+.-+..+-. T Consensus 51 s~~eIA~~L~iS~~TV~~~~~~i~~ 75 (99) T 1p4w_A 51 LVTEIAKKLNRSIKTISSQKKSAMM 75 (99) T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999998979699999999999999 No 311 >3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* Probab=40.37 E-value=12 Score=17.68 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 1788789999858987899999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~A 57 (125) .| |..+||+.+|||++|+.+- T Consensus 84 gl-tq~elA~~lgvs~~ti~~~ 104 (133) T 3gn5_A 84 SL-TQKEASEIFGGGVNAFSRY 104 (133) T ss_dssp TC-CHHHHHHHHCSCTTHHHHH T ss_pred CC-CHHHHHHHCCCCHHHHHHH T ss_conf 99-9999998809999999999 No 312 >1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=40.37 E-value=15 Score=16.99 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=22.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999999976498998881788789999858987899999 Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) |...|+.....-. + |..+||+.+|||+.|+.+- T Consensus 6 ig~~ik~lR~~~g------l-tq~~lA~~~gis~~~i~~~ 38 (76) T 1adr_A 6 MGERIRARRKKLK------I-RQAALGKMVGVSNVAISQW 38 (76) T ss_dssp HHHHHHHHHHHHT------C-CHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHHCC------C-CHHHHHHHHCCCHHHHHHH T ss_conf 9999999999919------9-9999999989499999999 No 313 >3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} Probab=40.31 E-value=19 Score=16.35 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 999999999764989988817887899998589878999999 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) -|...|+...... .+ |..+||+..|||++|+.+-. T Consensus 7 ~i~~~l~~lr~~~------g~-s~~~LA~~~Gvs~~tis~ie 41 (78) T 3b7h_A 7 FVSEHLMELITQQ------NL-TINRVATLAGLNQSTVNAMF 41 (78) T ss_dssp HHHHHHHHHHHHT------TC-CHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999994------99-89999999892999999998 No 314 >1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Probab=40.14 E-value=19 Score=16.33 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=20.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) |-.++|+.+++|..||+.-+..+-. T Consensus 38 s~~eIA~~l~iS~~TV~~~~~~i~~ 62 (82) T 1je8_A 38 PNKMIARRLDITESTVKVHVKHMLK 62 (82) T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999976848889999999999999 No 315 >2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=40.10 E-value=19 Score=16.33 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=33.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 8789999858987899999999988791673178336862 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) |..+||+..|++..-+++-+..|...|+++... .++..+ T Consensus 41 t~~eLa~~~g~~~~~l~~lL~~L~~~Gll~~~~-~~y~lt 79 (335) T 2r3s_A 41 SSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQA-EGYRLT 79 (335) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC-CEEEEC T ss_conf 999999771979999999999999779368569-988708 No 316 >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A* Probab=40.05 E-value=19 Score=16.32 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.9 Q ss_pred HCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 589878999999999887916731 Q T0586 47 LAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 47 ~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.+|.+++=.+++.|+++|+|... T Consensus 43 ~~i~~g~lY~~L~rL~~~GlI~~~ 66 (116) T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSY 66 (116) T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 168977549999999978976899 No 317 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Probab=40.02 E-value=19 Score=16.32 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=34.0 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 8789999858987899999999988791673178336862 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) |..+||+..|++..-+++-+..|...|++... +.|+|.. T Consensus 54 t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~~~-~~g~y~~ 92 (360) T 1tw3_A 54 TVKALAARTDTRPEALLRLIRHLVAIGLLEED-APGEFVP 92 (360) T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ETTEEEE T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE-CCCCCCC T ss_conf 99999988790999999999999867969950-8985546 No 318 >1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Probab=40.01 E-value=16 Score=16.81 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=28.4 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCEEEECCC-CEEEE Q ss_conf 9999858987899999999988791673178-33686 Q T0586 42 EMGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125) Q Consensus 42 ~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g-~G~~V 77 (125) +|...|.++...+.+.+..|-+.+||.+.++ ..+|+ T Consensus 53 ~l~~~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~ 89 (92) T 1iuy_A 53 QLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYT 89 (92) T ss_dssp HTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEE T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 9847589999999999999997778842799986467 No 319 >1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} Probab=39.98 E-value=19 Score=16.31 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=20.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) |..++|..+++|..||+.-+..+-. T Consensus 33 s~~eIA~~L~iS~~TV~~h~~~i~~ 57 (79) T 1x3u_A 33 PNKSIAYDLDISPRTVEVHRANVMA 57 (79) T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999988989789999999999999 No 320 >3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} Probab=39.82 E-value=19 Score=16.30 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=30.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 889889999999999976498998881788789999858987899999999 Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~ 60 (125) ...+.-+++.++|.+.+ .+.+ +..++|+.+|+|+++..+.++. T Consensus 166 ~~~~~~~~i~~~I~~~~-------~~~~-sl~~lA~~~~~S~~~l~r~fK~ 208 (276) T 3gbg_A 166 DDLDAMEKISCLVKSDI-------TRNW-RWADICGELRTNRMILKKELES 208 (276) T ss_dssp CTTCHHHHHHHHHHHTT-------TSCC-CHHHHHHHHTCCHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCC-------CCCC-CHHHHHHHHCCCHHHHHHHHHH T ss_conf 55899999999998573-------8999-9999999979799999999999 No 321 >1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=39.30 E-value=17 Score=16.71 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.3 Q ss_pred CCHHHHHHHHCCCHHHHHH Q ss_conf 8878999985898789999 Q T0586 38 PSVREMGVKLAVNPNTVSR 56 (125) Q Consensus 38 Pser~La~~~~VSr~TVr~ 56 (125) -|...||+.+|||+.+|.+ T Consensus 11 G~~~kLA~~lGis~~aVsq 29 (61) T 1rzs_A 11 GTQRAVAKALGISDAAVSQ 29 (61) T ss_dssp SSHHHHHHHHTCCHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHH T ss_conf 8899999992999999987 No 322 >3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} Probab=39.20 E-value=15 Score=17.04 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=33.9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 987777768889889999999999976498998881788789999858987899999 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) ||||...-. .-++|.+.-.+.+....|. .+ |.+++|+..|||+.|+-.- T Consensus 1 ~~~~r~~e~----~r~~Il~aA~~l~~~~G~~---~~-t~~~IA~~aGvs~~tiy~y 49 (203) T 3cdl_A 1 SNAMRLTDQ----KRESIVQAAIAEFGDRGFE---IT-SMDRIAARAEVSKRTVYNH 49 (203) T ss_dssp -----CCHH----HHHHHHHHHHHHHHHHCTT---TC-CHHHHHHHTTSCHHHHHTT T ss_pred CCCCCCCHH----HHHHHHHHHHHHHHHHCCC---CC-CHHHHHHHHCCCHHHHHHH T ss_conf 974625589----9999999999999975915---17-8999999979198899878 No 323 >1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 Probab=38.59 E-value=20 Score=16.17 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.1 Q ss_pred HCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 589878999999999887916731 Q T0586 47 LAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 47 ~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.+|..+|=.+++.|+++|+|... T Consensus 72 ~~is~gsIYp~L~rLe~~GlI~~~ 95 (145) T 1xma_A 72 YVIKETTLYSAFARLEKNGYIKSY 95 (145) T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE T ss_pred CCCCCCEEHHHHHHHHHCCCEEEE T ss_conf 257877432999999978973888 No 324 >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Probab=38.52 E-value=20 Score=16.17 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=39.3 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC------EEEECCCHH-HHHHHHHH Q ss_conf 817887899998589878999999999887916731783------368628807-89999999 Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM------GSFVTSDKA-LFDQLKKE 90 (125) Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~------G~~V~~~~~-~~~~~~~~ 90 (125) +-+ +..+.++.+..+..++.++++.|.+.|+|..++.- -.+|++... .+..+..+ T Consensus 419 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487) T 1hsj_A 419 NEI-SSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISE 480 (487) T ss_dssp SEE-EHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHH T ss_pred CCC-CHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 786-49999864167811204889887751210111357651079999627678779999999 No 325 >2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum ms-1} Probab=38.17 E-value=7.6 Score=18.98 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=26.4 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 7899998589878999999999887916731 Q T0586 40 VREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 40 er~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +..++...++|.+.|=.+++.|+++|+|+.. T Consensus 37 ~~~~~~~~~~s~g~iYp~L~kLe~~GlI~~~ 67 (180) T 2rkh_A 37 RHFTSRIMGPSLELMGISIELLRYEGLVEAV 67 (180) T ss_dssp HHHHHHHHSCCGGGTTCCTHHHHHTTSEECC T ss_pred HHHHCCEECCCCCCHHHHHHHHHHCCCEEEE T ss_conf 9983781089936399999999988997983 No 326 >3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} Probab=38.15 E-value=18 Score=16.55 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=27.1 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9877777688898899999999999764989988817887899998589878999999 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) ||+|...-+ .+.+.|+.....- .+ |..+||+.+|||++||.+-. T Consensus 1 sn~M~~~~~-------~~~~rik~~r~~~------gl-sq~~lA~~~gvs~~~is~~e 44 (76) T 3bs3_A 1 SNAMSNNQQ-------MMLNRIKVVLAEK------QR-TNRWLAEQMGKSENTISRWC 44 (76) T ss_dssp ----------------CCCBCHHHHHHHT------TC-CHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHH-------HHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHHHH T ss_conf 930205899-------9999999999993------99-89999999898999999998 No 327 >2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} Probab=38.14 E-value=20 Score=16.13 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=25.2 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 9999976498998881788789999858987899999999988 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ++...+..| + |-+++|+.++||..||+.-+..+.. T Consensus 36 evl~ll~~G-------~-s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (91) T 2rnj_A 36 EILLLIAKG-------Y-SNQEIASASHITIKTVKTHVSNILS 70 (91) T ss_dssp HHHHHHHTT-------C-CTTHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999928-------9-9999999978888799999999999 No 328 >3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp} Probab=37.64 E-value=18 Score=16.54 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.1 Q ss_pred CCCCHHHHHHHHCCCHHHHHH Q ss_conf 178878999985898789999 Q T0586 36 KLPSVREMGVKLAVNPNTVSR 56 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~ 56 (125) .| |..+||+.+|||+.||.+ T Consensus 36 gl-Tq~elA~~lgvs~~tis~ 55 (111) T 3mlf_A 36 GL-TQKELGDLFKVSSRTIQN 55 (111) T ss_dssp TC-CHHHHHHHHTSCHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHH T ss_conf 99-999999997988989999 No 329 >2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942} Probab=37.51 E-value=21 Score=16.07 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=31.5 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 999999764989988817887899998---589878999999999887916731 Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVK---LAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~---~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) -+|...+..+.. -|-.| ...|.+. +.+|.+|+=.+++.|+++|+|... T Consensus 37 ~~IL~~L~~~~~-yGYeI--~q~i~~~~g~~~is~GtLYp~L~rLe~~GlI~s~ 87 (138) T 2e1n_A 37 CYVLAVLRHEDS-YGTEL--IQHLETHWPNYRLSDTVLYTALKFLEDEQIISGY 87 (138) T ss_dssp HHHHHHHTTSCE-EHHHH--HHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEE T ss_pred HHHHHHHCCCCC-CHHHH--HHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEE T ss_conf 999999815998-89999--9999998399676875414999999988984888 No 330 >2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L Probab=36.94 E-value=19 Score=16.42 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 1788789999858987899999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~A 57 (125) .+ |..+||+.+|||++|+.+- T Consensus 18 gl-sq~ela~~~gi~~~~i~~~ 38 (68) T 2r1j_L 18 KI-RQAALGKMVGVSNVAISQW 38 (68) T ss_dssp TC-CHHHHHHHHTSCHHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHHH T ss_conf 99-9999998979699999999 No 331 >1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* Probab=36.92 E-value=21 Score=16.01 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=16.7 Q ss_pred CHHHHHHHHCCCHHHHHHH Q ss_conf 8789999858987899999 Q T0586 39 SVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 39 ser~La~~~~VSr~TVr~A 57 (125) |..+||+..|||+.|+.+- T Consensus 18 sq~~lA~~~Gis~~~is~~ 36 (71) T 1zug_A 18 TQTELATKAGVKQQSIQLI 36 (71) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHHCCHHHHHHH T ss_conf 9999999971589999999 No 332 >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Probab=36.85 E-value=12 Score=17.55 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=22.9 Q ss_pred HHHHHHHCCCHH------HHHHHHHHHHHCCEEEECCCCE Q ss_conf 899998589878------9999999998879167317833 Q T0586 41 REMGVKLAVNPN------TVSRAYQELERAGYIYAKRGMG 74 (125) Q Consensus 41 r~La~~~~VSr~------TVr~Al~~L~~~G~i~~~~g~G 74 (125) -++.+.|||+++ .|++||+.|...- +|-+| T Consensus 8 ~~~y~iLGv~~~a~~~~~~IKkAYrkla~k~----HPDk~ 43 (114) T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEF----HPDKG 43 (114) T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTC----CTTTC T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH----CCCCC T ss_conf 0599992999888879999999999999998----86847 No 333 >1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12 Probab=36.56 E-value=19 Score=16.36 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 999999999764989988817887899998589878999999 Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) .|-..|++.-.. ..| |..+||+.+|||+++|.+-- T Consensus 13 ~iG~~Ir~~R~~------~gl-tq~elA~~~gvs~~~is~~E 47 (91) T 1x57_A 13 EVGKVIQQGRQS------KGL-TQKDLATKINEKPQVIADYE 47 (91) T ss_dssp HHHHHHHHHHHT------TTC-CHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHH------CCC-CHHHHHHHHCCCHHHHHHHH T ss_conf 999999999998------188-69999998099999999997 No 334 >2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus} Probab=36.52 E-value=22 Score=15.97 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 999999999976498998881788789999858987899999999988 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ..|+.+|...+-...|-. -+..++|+.+|++...|.+++..|+. T Consensus 31 ~~Ia~~lI~~LD~~GyL~----~~~~eia~~l~~~~~~ve~vl~~lq~ 74 (76) T 2k9l_A 31 QELALELLNYLNEKGFLS----KSVEEISDVLRCSVEELEKVRQKVLR 74 (76) T ss_dssp HHHHHHHHHHCTTSSTTC----CCHHHHHHHHTSCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 999999997459888758----89999999979099999999999862 No 335 >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406} Probab=36.48 E-value=5.7 Score=19.79 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.8 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 178878999985898789999999998 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125) ++ |-.+||..+|+||.|+.+.++.|+ T Consensus 168 ~~-t~~~iA~~lG~sr~tlSRi~k~~~ 193 (194) T 3dn7_A 168 RV-PQYLLASYLGFTPEYLSEIRKKYI 193 (194) T ss_dssp --------------------------- T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 97-999999897988999999999861 No 336 >3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} Probab=36.31 E-value=22 Score=15.94 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=34.8 Q ss_pred CCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9877777688898-899999999999764989988817887899998589878999999 Q T0586 1 SNAMNPTFHADKP-IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 1 ~~~M~~~~~~~~P-ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) ||+|...=..+.+ .-++|.+.-...+....| +.. |.+++|+..|||+.|+-.-+ T Consensus 1 ~~~m~~~~~~k~~~~r~~Il~aA~~l~~~~G~---~~~-t~~~Ia~~agvs~~tlY~~F 55 (212) T 3knw_A 1 SNAMTTHQVKKSEAKRQHILDSGFHLVLRKGF---VGV-GLQEILKTSGVPKGSFYHYF 55 (212) T ss_dssp -----------CHHHHHHHHHHHHHHHHHHCS---TTC-CHHHHHHHHTCCHHHHHHHC T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHHHHH T ss_conf 99998766455499999999999999987095---528-89999999790999998885 No 337 >2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP} Probab=36.04 E-value=22 Score=15.92 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=31.5 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 99999764989988817887899998---589878999999999887916731 Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVK---LAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~---~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +|...+..|. .-|-.| .+.|.+. +.||.+|+=.++..|+++|+|.+. T Consensus 26 ~IL~~L~e~~-~yGYei--~~~l~~~~~~~~is~gtlYp~L~rLe~~GlI~s~ 75 (115) T 2dql_A 26 YILYVLLQGE-SYGTEL--IQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGY 75 (115) T ss_dssp HHHHHHTTSC-BCHHHH--HHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEE T ss_pred HHHHHHHCCC-CCHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 9999981599-789999--9999997795057987369999999988986999 No 338 >1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices, merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Probab=35.62 E-value=11 Score=17.96 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 78878999985898789999999998879167317 Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) + +..-|+..|+|++.++++.+..=.++|.|.+.| T Consensus 145 ~-~~evLa~aF~v~~e~~~kl~~~~~~~g~Iv~~p 178 (178) T 1dgw_A 145 F-SKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178 (178) T ss_dssp S-CHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC T ss_pred C-CHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECC T ss_conf 9-999999885969999999986645787389395 No 339 >3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis} Probab=35.50 E-value=23 Score=15.86 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=36.0 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCCCEEEECCCHHHHHHHHHH Q ss_conf 87899998589878999999999887---91673178336862880789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRGMGSFVTSDKALFDQLKKE 90 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g~G~~V~~~~~~~~~~~~~ 90 (125) |...=|+.+|+|.+||.+.++.|+++ -+.++ ++|...++....+...... T Consensus 22 S~s~AA~~L~iSq~avS~~i~~LE~~lg~~Lf~R--~r~~~lT~~G~~ll~~a~~ 74 (303) T 3isp_A 22 SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR--EKPCRATTAGIPLLRLAAQ 74 (303) T ss_dssp CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEEC--SSSCEECGGGHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEC--CCCCEECCCHHHHHHHHHH T ss_conf 9999999989698999999999999829412885--9896668533200467877 No 340 >1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A Probab=35.14 E-value=21 Score=16.12 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.4 Q ss_pred CHHHHHHHHCCCHHHHHHH Q ss_conf 8789999858987899999 Q T0586 39 SVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 39 ser~La~~~~VSr~TVr~A 57 (125) |..+||+..|+|++|+.+- T Consensus 16 tq~~la~~~gis~~~is~~ 34 (66) T 1utx_A 16 SQSELAALLEVSRQTINGI 34 (66) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 9999999759699999999 No 341 >2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583} Probab=35.03 E-value=23 Score=15.81 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=36.1 Q ss_pred CCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CEEEECCCCEEEECCCH Q ss_conf 9888178878999985-----89878999999999887--------91673178336862880 Q T0586 32 KGEDKLPSVREMGVKL-----AVNPNTVSRAYQELERA--------GYIYAKRGMGSFVTSDK 81 (125) Q Consensus 32 ~~G~~LPser~La~~~-----~VSr~TVr~Al~~L~~~--------G~i~~~~g~G~~V~~~~ 81 (125) .+|.-+ |-.+|.+.. .++..+++-.+..|... .+|.+.+|.||....++ T Consensus 58 ~~~~vv-sr~~L~~~vw~~~~~~~~~sl~~~I~rLRkkL~~~~~~~~~I~Tvrg~GY~l~~pe 119 (121) T 2hwv_A 58 HIGQVM-TREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPE 119 (121) T ss_dssp TTTCCB-CHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCSSTTSCSSEEEETTTEEEECCCC T ss_pred CCCCEE-CHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCC T ss_conf 799549-79999999738655467757647899999987526899985999688447856988 No 342 >2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} Probab=35.03 E-value=23 Score=15.81 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=5.2 Q ss_pred HHHHHHHHHCCE Q ss_conf 999999988791 Q T0586 55 SRAYQELERAGY 66 (125) Q Consensus 55 r~Al~~L~~~G~ 66 (125) ++.+..+..-|+ T Consensus 101 ~~~~~~~~~~g~ 112 (236) T 2q0o_A 101 RRFRDEAISHGI 112 (236) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHHCCC T ss_conf 999999997698 No 343 >2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3 Probab=34.84 E-value=21 Score=16.00 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=16.9 Q ss_pred CHHHHHHHHCCCHHHHHHH Q ss_conf 8789999858987899999 Q T0586 39 SVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 39 ser~La~~~~VSr~TVr~A 57 (125) +..+||+..|||+.++.+- T Consensus 29 s~~elA~~~Gvs~~~is~i 47 (86) T 2ofy_A 29 SMVTVAFDAGISVETLRKI 47 (86) T ss_dssp CHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 9999999989599999999 No 344 >3ke2_A Uncharacterized protein YP_928783.1; structural genomics, unknown function, structural genomics; HET: MSE; 2.50A {Shewanella amazonensis SB2B} Probab=34.71 E-value=23 Score=15.78 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=49.8 Q ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE------ECCCCE Q ss_conf 877777688-8988999999999997649899888178878999985898789999999998879167------317833 Q T0586 2 NAMNPTFHA-DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY------AKRGMG 74 (125) Q Consensus 2 ~~M~~~~~~-~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~------~~~g~G 74 (125) |+|+.+++. ....|.++| |.-.|-+| .+++..|.+.-|.-|-|++.+++-|.+-|+.- .+.+.| T Consensus 6 ~~~~~evSKtk~sFyRRLY--lA~LIds~-------~~nvp~L~~~TGmPRRT~QDtI~AL~dlgIe~~FvQ~G~Rnn~G 76 (117) T 3ke2_A 6 NASGDQVSKQHKAFLRKLY--LAHLMDDA-------RHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAG 76 (117) T ss_dssp ---CCSSCHHHHHHHHHHH--HHHHHHHS-------CCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTCCSCC T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHCC-------CCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC T ss_conf 0478787788999999999--99998348-------86448999885673778999998611477189986546154777 Q ss_pred EEECC Q ss_conf 68628 Q T0586 75 SFVTS 79 (125) Q Consensus 75 ~~V~~ 79 (125) +|--. T Consensus 77 ~Y~I~ 81 (117) T 3ke2_A 77 YYRIR 81 (117) T ss_dssp EEEEE T ss_pred CEEEE T ss_conf 57863 No 345 >1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A* Probab=34.35 E-value=23 Score=15.74 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.1 Q ss_pred HHHHHHHCCE Q ss_conf 9999988791 Q T0586 57 AYQELERAGY 66 (125) Q Consensus 57 Al~~L~~~G~ 66 (125) -+.....-|+ T Consensus 101 ~~~~a~~~g~ 110 (234) T 1l3l_A 101 FYDHASDFGI 110 (234) T ss_dssp HHHHHHTTTC T ss_pred HHHHHHHCCC T ss_conf 9999997696 No 346 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Probab=34.10 E-value=24 Score=15.72 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=34.0 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 8789999858987899999999988791673178336862 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) |..+||+.+|++...+++-+..|...|++... +.|+|.. T Consensus 40 t~~eLA~~~g~~~~~l~rlL~~L~a~Gil~e~-~~g~y~~ 78 (332) T 3i53_A 40 TAAEIASAAGAHADSLDRLLRHLVAVGLFTRD-GQGVYGL 78 (332) T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-TTSBEEE T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC-CCCEECC T ss_conf 99999988790989999999999988918955-8985805 No 347 >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Probab=34.09 E-value=6.6 Score=19.39 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=19.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) +.+++|+.++++...+.++|+.+.. T Consensus 188 tl~eia~~~~i~~k~l~r~~k~~~~ 212 (345) T 3k7a_M 188 TFKEIQSLIHVKTKEFGKTLNIMKN 212 (345) T ss_dssp CHHHHHHSSSCCSHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 7999998869889999999999999 No 348 >1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12 Probab=34.09 E-value=24 Score=15.72 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=15.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 878999985898789999999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125) ...+-|+.+||||+|+.+=++ T Consensus 56 N~s~AAr~LGIsR~TLyrklk 76 (81) T 1umq_A 56 NVSETARRLNMHRRTLQRILA 76 (81) T ss_dssp CHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHH T ss_conf 099999996989999999999 No 349 >3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} Probab=33.98 E-value=23 Score=15.82 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHH Q ss_conf 788789999858987899999 Q T0586 37 LPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 37 LPser~La~~~~VSr~TVr~A 57 (125) +-|...||+.+|||..+|.+- T Consensus 11 ~G~q~~LAr~lGvsq~~Vs~W 31 (79) T 3bd1_A 11 LGSVSALAASLGVRQSAISNW 31 (79) T ss_dssp HSSHHHHHHHHTCCHHHHHHH T ss_pred HCCHHHHHHHHCCCHHHHHHH T ss_conf 689999999919989999998 No 350 >1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A Probab=33.92 E-value=24 Score=15.70 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=17.6 Q ss_pred CHHHHHHHHCCCHHHHHHHH Q ss_conf 87899998589878999999 Q T0586 39 SVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al 58 (125) |..+||+..|||+.|+.+-. T Consensus 16 sq~ela~~~gvs~~ti~~~e 35 (69) T 1r69_A 16 NQAELAQKVGTTQQSIEQLE 35 (69) T ss_dssp CHHHHHHHHTSCHHHHHHHH T ss_pred CHHHHHHHCCCCHHHHHHHH T ss_conf 99999785098999999998 No 351 >1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A Probab=33.77 E-value=24 Score=15.68 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=30.2 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 999999976498998881788789999858987899999999988 Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125) ...+.+.|...- .+.+ +..+||+.+|+|+.+..+.++..-. T Consensus 13 i~~i~~~i~~n~---~~~~-sl~~la~~~~~S~~~l~r~Fk~~~g 53 (129) T 1bl0_A 13 IHSILDWIEDNL---ESPL-SLEKVSERSGYSKWHLQRMFKKETG 53 (129) T ss_dssp HHHHHHHHHTTT---TSCC-CCHHHHHHSSSCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHC---CCCC-CHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 999999999834---8999-9999999989199999999999989 No 352 >3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Probab=33.27 E-value=24 Score=15.63 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999999999976498998881788789999858987899999 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) +..|...|+..-....| |..+||+.+|||++|+.+- T Consensus 10 ~~~iG~rir~lR~~~gl-------tq~elA~~~gvs~~~is~~ 45 (126) T 3ivp_A 10 FRALGLAIKEARKKQGL-------TREQVGAMIEIDPRYLTNI 45 (126) T ss_dssp THHHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-------CHHHHHHHCCCCHHHHHHH T ss_conf 99999999999998399-------9999977429988589999 No 353 >1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59 Probab=33.03 E-value=25 Score=15.60 Aligned_cols=70 Identities=14% Similarity=0.329 Sum_probs=46.1 Q ss_pred CHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHH--------CC-----C-----HHHHHHHHHHHHHCCEEEECCCC Q ss_conf 8899999999999764989988-8178878999985--------89-----8-----78999999999887916731783 Q T0586 13 PIYSQISDWMKKQMITGEWKGE-DKLPSVREMGVKL--------AV-----N-----PNTVSRAYQELERAGYIYAKRGM 73 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G-~~LPser~La~~~--------~V-----S-----r~TVr~Al~~L~~~G~i~~~~g~ 73 (125) -+.+.|.+.|.+.=+...|+.. +.++|.-.||..= .+ | ++--.+|++.|+++|+|..+.+. T Consensus 20 lLsekikeFL~EnkVq~Fyq~ELEtVesL~sla~qPv~~s~~s~q~~~~~~stskqI~siFKeAi~~Lqe~G~VFqK~~~ 99 (120) T 1wj5_A 20 LLSEKIKEFLQEKKMQSFYQQELETVESLQSLASRPVTHSTGSDQVELKDSGTSGVAQRVFKNALQLLQEKGLVFQRDSG 99 (120) T ss_dssp HHHHHHHHHHHHHTCSCBCHHHHHTCHHHHHHHSSCCSCCSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHTSEECSSCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCC T ss_conf 99999999998745643118888879999998608852343075525888737899999999999999877878841798 Q ss_pred ---EEEECCCHH Q ss_conf ---368628807 Q T0586 74 ---GSFVTSDKA 82 (125) Q Consensus 74 ---G~~V~~~~~ 82 (125) =++|+..+. T Consensus 100 ~D~lYyVT~qDK 111 (120) T 1wj5_A 100 SDKLYYVTTKDK 111 (120) T ss_dssp SSCCBEECSSSC T ss_pred CCCEEEEECCCC T ss_conf 653388613554 No 354 >3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} Probab=32.91 E-value=25 Score=15.59 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=31.5 Q ss_pred HHHHHHHHHHCCCCCCCCCCCC-------HHHHHHHHCCCHHHHHHHHHH Q ss_conf 9999999976498998881788-------789999858987899999999 Q T0586 18 ISDWMKKQMITGEWKGEDKLPS-------VREMGVKLAVNPNTVSRAYQE 60 (125) Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPs-------er~La~~~~VSr~TVr~Al~~ 60 (125) |.......|.+|.+ +.+|+ .|.+|+.+|++...+-++|.. T Consensus 28 I~~~~l~aiE~~~~---~~~p~~~~~~g~lr~yA~~L~ld~~~ll~~~~~ 74 (130) T 3fym_A 28 IKREMLVHIENNEF---DQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQD 74 (130) T ss_dssp CCHHHHHHHHTTCG---GGSSSGGGHHHHHHHHHHHTTCCHHHHHHHTTT T ss_pred CCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 89999999985896---546431699999999999959599999999987 No 355 >3d6k_A Putative aminotransferase; APC82464, structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Probab=31.83 E-value=18 Score=16.53 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=9.0 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCE Q ss_conf 99858987899999999988791 Q T0586 44 GVKLAVNPNTVSRAYQELERAGY 66 (125) Q Consensus 44 a~~~~VSr~TVr~Al~~L~~~G~ 66 (125) |+.++++++||..+|..|..+|+ T Consensus 11 a~~l~~~~~~~~~~~~~l~~~~~ 33 (422) T 3d6k_A 11 AARLAQVREEVTAKYAELKAKNL 33 (422) T ss_dssp -------CHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99987608899999999986799 No 356 >1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A 1etw_A 4fis_A Probab=31.47 E-value=26 Score=15.44 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=9.4 Q ss_pred HHHHHHHHCCCHHHHHHHHH Q ss_conf 78999985898789999999 Q T0586 40 VREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 40 er~La~~~~VSr~TVr~Al~ 59 (125) ..+-|+.+|+||+|..+=++ T Consensus 74 ~~~AA~~Lgisr~tL~~kl~ 93 (98) T 1eto_A 74 QTRAALMMGINRGTLRKKLK 93 (98) T ss_dssp HHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHH T ss_conf 99999997989999999999 No 357 >2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A Probab=31.35 E-value=26 Score=15.42 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=34.7 Q ss_pred CCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CEEEECCCCEEEECCCHH Q ss_conf 9888178878999985-----89878999999999887--------916731783368628807 Q T0586 32 KGEDKLPSVREMGVKL-----AVNPNTVSRAYQELERA--------GYIYAKRGMGSFVTSDKA 82 (125) Q Consensus 32 ~~G~~LPser~La~~~-----~VSr~TVr~Al~~L~~~--------G~i~~~~g~G~~V~~~~~ 82 (125) .+|.-+ |-.+|.+.. .++..++.-.+..|... -+|.+.+|.|+.....+. T Consensus 51 ~~g~vv-sr~~l~~~vwg~~~~~~~~~l~~~I~rLRkKl~~~~~~~~~I~Tvrg~GY~l~~~~~ 113 (120) T 2z9m_A 51 HMGQVM-TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHEL 113 (120) T ss_dssp TTTCCE-EHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTTEEEECCC-- T ss_pred CCCCEE-CHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCC T ss_conf 899567-399999761588778999573079999999853378999859995899388746833 No 358 >3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} Probab=31.24 E-value=26 Score=15.41 Aligned_cols=45 Identities=7% Similarity=0.257 Sum_probs=27.5 Q ss_pred CCCCHHHHHHHH----HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 889889999999----9999764989988817887899998589878999999999 Q T0586 10 ADKPIYSQISDW----MKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125) Q Consensus 10 ~~~Ply~qI~~~----l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L 61 (125) ...|+-+.+.+. |...+..-.+ +..+.|+.+||||+|+.+=++.+ T Consensus 8 ~~~~lk~~~~~~E~~~I~~aL~~~~g-------n~~~aA~~Lgi~r~tL~~klkk~ 56 (63) T 3e7l_A 8 KIKELKEAKKEFEKIFIEEKLREYDY-------DLKRTAEEIGIDLSNLYRKIKSL 56 (63) T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHTCCHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 68989999999999999999999199-------89999999895999999999994 No 359 >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Probab=31.15 E-value=26 Score=15.40 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=40.2 Q ss_pred HHHHHHCCCC---CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE Q ss_conf 9999764989---9888178878999985898789999999998879167317833686 Q T0586 22 MKKQMITGEW---KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125) Q Consensus 22 l~~~I~~G~l---~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125) |+..+..|-+ ..| .+ |..+||+..|++...+++-+..|...|++.... |.|. T Consensus 39 L~aa~eLglfd~L~~g-p~-t~~eLA~~~g~~~~~l~rlL~~L~~~gll~~~~--g~y~ 93 (348) T 3lst_A 39 LRAAAAVGVADHLVDG-PR-TPAELAAATGTDADALRRVLRLLAVRDVVRESD--GRFA 93 (348) T ss_dssp HHHHHHHTGGGGGTTS-CB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEE T ss_pred HHHHHHCCHHHHHCCC-CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC--CEEE T ss_conf 9999987942886289-98-999999887909899999999999889889449--9474 No 360 >3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} Probab=30.57 E-value=27 Score=15.34 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=33.2 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9877777688898899999999999764989988817887899998589878999999 Q T0586 1 SNAMNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 1 ~~~M~~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) ||||.= .-.-++|-+.-.+.+....| +.+ |.+++|+..|||+.|+-.-+ T Consensus 1 ~~a~~r-----~~tR~~Il~aA~~l~~~~G~---~~~-t~~~IA~~agvs~~tlY~~F 49 (206) T 3dew_A 1 SNAMTR-----ADCRSRLMEVATELFAQKGF---YGV-SIRELAQAAGASISMISYHF 49 (206) T ss_dssp ------------CHHHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTCCHHHHHHHS T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC T ss_conf 997878-----99999999999999998592---528-89999999594999998884 No 361 >2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* Probab=30.43 E-value=8.2 Score=18.74 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=34.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCCCEEEECCCHHHHHH Q ss_conf 87899998589878999999999887---9167317833686288078999 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRGMGSFVTSDKALFDQ 86 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g~G~~V~~~~~~~~~ 86 (125) |...=|+.++||++||.+.++.|+++ -+.+ +.++|...++....+.. T Consensus 17 s~~~AA~~L~isqsavS~~i~~LE~~lg~~Lf~-R~~~~~~lT~~G~~l~~ 66 (313) T 2h98_A 17 SISKAAEKLCIAQPPLSRQIQKLEEELGIQLFE-RGFRPAKVTEAGMFFYQ 66 (313) T ss_dssp --------------------------------------------------- T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-ECCCCCCCCHHHHHHHH T ss_conf 999999998988899999999999996999999-89997733872899987 No 362 >3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} Probab=30.36 E-value=27 Score=15.32 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=44.9 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHH Q ss_conf 88999999999997649899888178878999985898789999999998879167317833686288078999999999 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELA 92 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~ 92 (125) .+-.+|...|+..-.... + |..+||+..|||++|+.+--+ |+. . .. T Consensus 7 ~~~~~i~~~ik~~R~~~g------l-sq~~la~~~gis~~~i~~~E~------------G~~--~--~~----------- 52 (82) T 3clc_A 7 FLLSKVSFVIKKIRLEKG------M-TQEDLAYKSNLDRTYISGIER------------NSR--N--LT----------- 52 (82) T ss_dssp HHHHHHHHHHHHHHHHTT------C-CHHHHHHHHTSCHHHHHHHHT------------TCC--C--CB----------- T ss_pred HHHHHHHHHHHHHHHHCC------C-CHHHHHHHHCCCHHHHHHHHC------------CCC--C--CC----------- T ss_conf 999999999999999829------9-999998783998979999986------------998--9--99----------- Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 999999999999819999899999999986159 Q T0586 93 DAITERFLEEAKSIGLDDQTAIELLIKRSRNHE 125 (125) Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E 125 (125) +..+..-+..++++.++++....+..-.|| T Consensus 53 ---~~~l~~ia~~l~v~~~~l~~~~~~e~~~~d 82 (82) T 3clc_A 53 ---IKSLELIMKGLEVSDVVFFEMLIKEILKHD 82 (82) T ss_dssp ---HHHHHHHHHHHTCCHHHHHHHHHHHHTC-- T ss_pred ---HHHHHHHHHHHCCCHHHHHCCCHHHHHCCC T ss_conf ---999999999969989999760389871579 No 363 >3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Probab=30.29 E-value=26 Score=15.41 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 1788789999858987899999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~A 57 (125) .| |..+||+.+|+|..++.+- T Consensus 25 gl-tq~elA~~lg~s~~~is~~ 45 (80) T 3kz3_A 25 GL-SYESVADKMGMGQSAVAAL 45 (80) T ss_dssp TC-CHHHHHHHTTSCHHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHHH T ss_conf 99-8999998788049799998 No 364 >2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A* Probab=30.03 E-value=28 Score=15.28 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=26.9 Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 99888178878999985898789999999998 Q T0586 31 WKGEDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 31 l~~G~~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125) +-+|....|.+++|+..|||.-++|+-...|- T Consensus 72 l~d~~~~YT~rEvAe~tGv~~e~~rr~wRalG 103 (222) T 2ev1_A 72 VGDDGTYVSAREISENYGVDLELLQRVQRAVG 103 (222) T ss_dssp TTCCSCEECHHHHHHHHTCCHHHHHHHHHHHC T ss_pred HCCCCCEECHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 06998668699999997919999999999829 No 365 >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Probab=28.69 E-value=29 Score=15.13 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=29.3 Q ss_pred CCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHH-------CCEEEECCCCEEEECCCHH Q ss_conf 9888178878999985-----8987899999999988-------7916731783368628807 Q T0586 32 KGEDKLPSVREMGVKL-----AVNPNTVSRAYQELER-------AGYIYAKRGMGSFVTSDKA 82 (125) Q Consensus 32 ~~G~~LPser~La~~~-----~VSr~TVr~Al~~L~~-------~G~i~~~~g~G~~V~~~~~ 82 (125) .+|..+ |-.+|.+.. .++..||.-.+..|.. ..+|.+.+|.||..+.+.+ T Consensus 158 ~~g~vv-sr~~L~~~vwg~~~~~~~~~ld~~I~rLRkKL~~~~~~~~I~Tvrg~GYr~~~p~~ 219 (223) T 2hqr_A 158 HRDQIV-SKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYPKP 219 (223) T ss_dssp TCSEEE-EHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTTSSSCCEEECSSSEEEECCCGG T ss_pred CCCCCC-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC T ss_conf 899157-39999999628877888678999999999985466999819997373167786888 No 366 >2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} Probab=28.24 E-value=30 Score=15.08 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=15.3 Q ss_pred CCCHHHHHHHHC--CCHHHHHHH Q ss_conf 788789999858--987899999 Q T0586 37 LPSVREMGVKLA--VNPNTVSRA 57 (125) Q Consensus 37 LPser~La~~~~--VSr~TVr~A 57 (125) | |..+||+.+| ||++++.+- T Consensus 22 l-tq~~lA~~~g~~is~~~is~~ 43 (71) T 2ewt_A 22 L-SLHGVEEKSQGRWKAVVVGSY 43 (71) T ss_dssp C-CHHHHHHHTTTSSCHHHHHHH T ss_pred C-CHHHHHHHHCCCCCHHHHHHH T ss_conf 9-699999998897289999999 No 367 >1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis KOD1} SCOP: a.4.2.1 c.55.7.1 Probab=27.95 E-value=30 Score=15.05 Aligned_cols=50 Identities=18% Similarity=0.384 Sum_probs=37.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 77688898899999999999764989988817887899998589878999999999 Q T0586 6 PTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125) Q Consensus 6 ~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L 61 (125) ++++-.+|...+|++.|... .|.|+-. |-.++|+..|-+.-.|-.|+... T Consensus 84 ld~~g~T~Fq~~V~~~l~~~-----IP~G~v~-TYg~iA~~~g~~~RaVG~a~~~N 133 (174) T 1mgt_A 84 LSFEGVTPFEKKVYEWLTKN-----VKRGSVI-TYGDLAKALNTSPRAVGGAMKRN 133 (174) T ss_dssp BCCTTCCHHHHHHHHHHHHH-----SCTTCCE-EHHHHHHHTTSCHHHHHHHHHTC T ss_pred CCCCCCCHHHHHHHHHHHHH-----CCCCEEE-CHHHHHHHCCCCCHHHHHHHHHC T ss_conf 77679998999999999844-----8994477-79999988399728999998608 No 368 >3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Probab=27.84 E-value=30 Score=15.04 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=30.2 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE Q ss_conf 888178878999985898789999999998879167 Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125) Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~ 68 (125) ..+.+ |..+|++..|++...+.+++..|...|++. T Consensus 212 ~~~~l-t~~ei~~~t~i~~~~l~~~L~~l~~~~~lk 246 (382) T 3dpl_C 212 PREKI-SFENLKLATELPDAELRRTLWSLVAFPKLK 246 (382) T ss_dssp TTCCE-EHHHHHHHHCCCHHHHHHHHHHHHCCTTCS T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCHH T ss_conf 88754-699999886888899999999987233124 No 369 >1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 Probab=27.20 E-value=10 Score=18.15 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=29.3 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEE--ECCCCEE-EECCC Q ss_conf 878999985898789999999998879167--3178336-86288 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIY--AKRGMGS-FVTSD 80 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~--~~~g~G~-~V~~~ 80 (125) |...=|+.+++|.++|.+.++.|+++==+. .+.|+|. -.++. T Consensus 18 s~s~AA~~L~isqsavS~~i~~LE~~lg~~Lf~R~~r~~~~lT~a 62 (324) T 1al3_A 18 NVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPA 62 (324) T ss_dssp --------------------------------------------- T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH T ss_conf 899999998988899999999999997996099879998667886 No 370 >1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A Probab=27.03 E-value=31 Score=14.94 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=46.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH-HHHHHHCCC-------HHHHHHHHHHHHHCCEEEECCC-CEEEE Q ss_conf 8988999999999997649899888178878-999985898-------7899999999988791673178-33686 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVR-EMGVKLAVN-------PNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser-~La~~~~VS-------r~TVr~Al~~L~~~G~i~~~~g-~G~~V 77 (125) ..|-|. +-|.+.|..-.=+.|.-+++.. -+...|++. ++-++.|++.+.+.|.+....| +|+|- T Consensus 6 ~~psy~---~MI~eAI~~l~er~GSS~~AI~KYI~~~y~~~~~~~~~f~~~l~~aLkk~v~~G~L~q~KG~sG~fk 78 (88) T 1uss_A 6 SSLTYK---EMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIK 78 (88) T ss_dssp SSCCHH---HHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBE T ss_pred CCCCHH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEE T ss_conf 999899---9999999973888996899999999998777765447699999999999987597784248975066 No 371 >2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} Probab=26.99 E-value=31 Score=14.94 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=28.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 999999999976498998881788789999858987899999 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) ++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-.- T Consensus 5 e~Il~aa~~l~~~~G~---~~~-ti~~IA~~agvs~~tiY~~ 42 (179) T 2eh3_A 5 ERILEVSKELFFEKGY---QGT-SVEEIVKRANLSKGAFYFH 42 (179) T ss_dssp HHHHHHHHHHHHHHCS---TTC-CHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCCCHHHHH T ss_conf 9999999999997492---517-6999999878093415451 No 372 >3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} Probab=26.94 E-value=31 Score=14.93 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=35.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-------------CCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 88999999999997649899888178878999985-------------898789999999998879167317 Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKL-------------AVNPNTVSRAYQELERAGYIYAKR 71 (125) Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~-------------~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125) |-|.++.+.-...+..... |+.+|-..+ +++...|..++..|.+.|||.=.. T Consensus 2 ~~~~~~~~~Al~~Ls~r~~-------S~~eL~~kL~~k~~~~~~~~~~~~~~e~I~~vi~~L~e~gyldD~r 66 (159) T 3c1d_A 2 PAYARLLDRAVRILAVRDH-------SEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSR 66 (159) T ss_dssp HHHHHHHHHHHHHHTTSCC-------CHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHH T ss_pred CHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH T ss_conf 1799999999999754155-------8999999999873210331112478999999999999949998899 No 373 >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Probab=26.79 E-value=31 Score=14.92 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=32.9 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE---EEECCCHH Q ss_conf 8999985898789999999998879167317833---68628807 Q T0586 41 REMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG---SFVTSDKA 82 (125) Q Consensus 41 r~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G---~~V~~~~~ 82 (125) ...-.+|-.|..|--.|-+-|.++|+|.-++-+| .|.++... T Consensus 30 kkvna~fpmstatfydakkfliqegfi~e~qe~gek~~yltekgk 74 (99) T 1tbx_A 30 KKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGK 74 (99) T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH T ss_pred HHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCE T ss_conf 774566865310103468788886747888766843689812771 No 374 >3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* Probab=26.78 E-value=31 Score=14.91 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=14.2 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 87899998589878999999999887916731 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) +.++++..+++|++||++.++ ..|+.... T Consensus 88 s~~~i~~~l~iS~~Tv~r~L~---~~g~~~k~ 116 (345) T 3hot_A 88 TQKQLAEQLEVSQQAVSNRLR---EMGKIQKV 116 (345) T ss_dssp CHHHHHHHTTSCHHHHHHHHH---HTTCEEEE T ss_pred CHHHHHHHHCCCHHHHHHHHH---HCCCCEEC T ss_conf 499999883989999999999---83880203 No 375 >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Probab=26.25 E-value=32 Score=14.85 Aligned_cols=38 Identities=5% Similarity=-0.032 Sum_probs=28.3 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC Q ss_conf 789999858987899999999988791673178336862 Q T0586 40 VREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125) Q Consensus 40 er~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125) ....+...+++..++.+++..|.+.|+|+... .++.+. T Consensus 303 ~~~~~~~~~~~~~~~~~~L~~L~~~~lI~~~~-~~Y~~~ 340 (350) T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEED-NTYKIA 340 (350) T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET-TEEEES T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEC-CEEEEC T ss_conf 99986227999999999999999789979989-999991 No 376 >3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} Probab=25.84 E-value=33 Score=14.80 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=35.3 Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 98777776888-98899999999999764989988817887899998589878999 Q T0586 1 SNAMNPTFHAD-KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVS 55 (125) Q Consensus 1 ~~~M~~~~~~~-~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr 55 (125) ||||.-.-+.. ...-++|.+.-.+.+....| +.+ |.+++|+..|||+.|+- T Consensus 1 ~~~m~~p~~r~~~~~r~~Il~aA~~l~~~~G~---~~~-s~~~Ia~~agvs~~tiY 52 (199) T 3crj_A 1 SNAMAGPSDRTFSDQTEEIMQATYRALREHGY---ADL-TIQRIADEYGKSTAAVH 52 (199) T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHTT---TTC-CHHHHHHHHTSCHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHH T ss_conf 99999999998788999999999999997292---407-89999999791999998 No 377 >3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A* Probab=25.49 E-value=33 Score=14.76 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=34.4 Q ss_pred CHHHHHHHHHHHHHH--CCCCCCCCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 889999999999976--498998881--7887899998589878999999999887 Q T0586 13 PIYSQISDWMKKQMI--TGEWKGEDK--LPSVREMGVKLAVNPNTVSRAYQELERA 64 (125) Q Consensus 13 Ply~qI~~~l~~~I~--~G~l~~G~~--LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125) ++...-...|...|- ...++|... ||+-...+..+++-|+.+|+|=..+..- T Consensus 92 ~i~~~~v~~Le~~id~~~~~l~~~~~FilPgg~~~~A~Lh~aRtv~RrAER~~v~l 147 (194) T 3ci3_A 92 FKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQL 147 (194) T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56478999999999999854898660278998999999999999999999999999 No 378 >2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Probab=25.35 E-value=33 Score=14.75 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEE Q ss_conf 99999999999764989988817887899998589878999999999887916 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYI 67 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i 67 (125) |.-+.+.|.... ++.|-.+ +..+--..++|-.+-+++.|..|...||| T Consensus 41 YL~~K~~Li~E~----~k~gg~l-~k~da~~l~kiD~~K~~rIydfl~~~GWI 88 (88) T 2elj_A 41 YLVLKEVMFREL----LKTGGNL-SKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88) T ss_dssp HHHHHHHHHHHH----HHHSSCC-CHHHHHHHTTSCHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHH----HHCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 999999999999----9839986-39999998742648799999999986999 No 379 >1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Probab=24.75 E-value=12 Score=17.68 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=31.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC--EEEECCCCEEEECCCH Q ss_conf 878999985898789999999998879--1673178336862880 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAG--YIYAKRGMGSFVTSDK 81 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G--~i~~~~g~G~~V~~~~ 81 (125) |...=|+.+++|.+||.+.++.|+++= =+..+.++|...++.. T Consensus 30 s~s~AA~~L~isq~avS~~i~~LE~~lG~~LF~R~~r~~~lT~~g 74 (315) T 1uth_A 30 SVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTPYA 74 (315) T ss_dssp --------------------------------------------- T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEEHHHH T ss_conf 999999997879889999999999983991799819986102889 No 380 >2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99} Probab=24.32 E-value=35 Score=14.62 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=31.3 Q ss_pred CCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHH-------CCEEEECCCCEEEECCCHH Q ss_conf 888178878999985-----8987899999999988-------7916731783368628807 Q T0586 33 GEDKLPSVREMGVKL-----AVNPNTVSRAYQELER-------AGYIYAKRGMGSFVTSDKA 82 (125) Q Consensus 33 ~G~~LPser~La~~~-----~VSr~TVr~Al~~L~~-------~G~i~~~~g~G~~V~~~~~ 82 (125) +|.-+ |-.+|.+.. .++.+++.-.+..|.. ..+|.+.+|.|+....+.+ T Consensus 45 ~g~~v-sr~~l~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~~~~I~tv~g~GYrl~~~~p 105 (109) T 2hqn_A 45 RDQIV-SKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGYRFCYPKP 105 (109) T ss_dssp TCSEE-EHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTTTSCCCCEEECSSSEEEECCCSS T ss_pred CCCCC-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCCCC T ss_conf 99987-89999998609887757450999999999986155999849997586348888888 No 381 >1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7 Probab=24.08 E-value=20 Score=16.27 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=19.9 Q ss_pred CCHHHHHHHH------CCCHHHHHHHHHHHH Q ss_conf 8878999985------898789999999998 Q T0586 38 PSVREMGVKL------AVNPNTVSRAYQELE 62 (125) Q Consensus 38 Pser~La~~~------~VSr~TVr~Al~~L~ 62 (125) ++..+||+.| +||++||++-++.=. T Consensus 31 ~~Q~~la~wf~~~f~~~Is~STvs~Ilk~k~ 61 (144) T 1iuf_A 31 SGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144) T ss_dssp CCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHCHH T ss_conf 7799999999999889976989999996899 No 382 >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=23.94 E-value=35 Score=14.57 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=31.4 Q ss_pred CCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHH-------CCEEEECCCCEEEECC Q ss_conf 9888178878999985-----8987899999999988-------7916731783368628 Q T0586 32 KGEDKLPSVREMGVKL-----AVNPNTVSRAYQELER-------AGYIYAKRGMGSFVTS 79 (125) Q Consensus 32 ~~G~~LPser~La~~~-----~VSr~TVr~Al~~L~~-------~G~i~~~~g~G~~V~~ 79 (125) .+|..+ |-.+|.+.. .++..||.-.+.+|.. ..+|.+.+|.||...+ T Consensus 166 ~~~~vv-sr~~L~~~vwg~~~~~~~~tl~~~I~rLR~KL~~~~~~~~I~tv~g~GY~l~~ 224 (225) T 1kgs_A 166 NKNRVV-TKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARD 224 (225) T ss_dssp TTTSCE-EHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTTEEEECC T ss_pred CCCEEE-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEE T ss_conf 243444-29999998717777876576999999999984577999948991360089823 No 383 >3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A Probab=23.63 E-value=36 Score=14.54 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 89999999999976498998881788789999858987899999 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125) +-+.|-..|+.....-. | |..+||+..|||++++.+- T Consensus 25 ~~~~iG~~Lr~~R~~~g------l-sq~~lA~~~gis~~~is~~ 61 (117) T 3f52_A 25 LREALGAALRSFRADKG------V-TLRELAEASRVSPGYLSEL 61 (117) T ss_dssp HHHHHHHHHHHHHHHHT------C-CHHHHHHHTTSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999959------8-9999998860307789999 No 384 >3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV} Probab=23.54 E-value=36 Score=14.52 Aligned_cols=28 Identities=4% Similarity=0.205 Sum_probs=14.0 Q ss_pred HHHHHHHCCCHHHHH----HHHHHHHHCCEEE Q ss_conf 899998589878999----9999998879167 Q T0586 41 REMGVKLAVNPNTVS----RAYQELERAGYIY 68 (125) Q Consensus 41 r~La~~~~VSr~TVr----~Al~~L~~~G~i~ 68 (125) ..|+++|++.+.++. .-+..|.+.|+|+ T Consensus 63 ~~L~~~y~~~~~~~~~Dv~~fl~~L~~~glIe 94 (95) T 3g2b_A 63 QTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95) T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 99999868887789999999999999872887 No 385 >3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae} Probab=23.50 E-value=36 Score=14.52 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=17.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 17887899998589878999999 Q T0586 36 KLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al 58 (125) .+ |..+||+.+|||++++.+-- T Consensus 81 gl-Tq~elA~~~gvs~~~is~iE 102 (141) T 3kxa_A 81 GF-TQSELATAAGLPQPYLSRIE 102 (141) T ss_dssp TC-CHHHHHHHTTCCHHHHHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHHHH T ss_conf 99-89999999897999999998 No 386 >2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* Probab=22.81 E-value=14 Score=17.28 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=32.7 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCCCEEEECCCHHHHH Q ss_conf 87899998589878999999999887---916731783368628807899 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRGMGSFVTSDKALFD 85 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g~G~~V~~~~~~~~ 85 (125) |...=|+.+|||+++|.+.++.|++. -+.. +.++|...++....+. T Consensus 17 s~s~AA~~L~vtqsavS~~i~~LE~~lg~~Lf~-R~~~~~~lT~~G~~l~ 65 (312) T 2h9b_A 17 SFTKAADKLCIAQPPLSRQIQNLEEELGIQLLE-RGSRPVKTTPEGHFFY 65 (312) T ss_dssp -------------------------------------------------- T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-ECCCCEEECHHHHHCC T ss_conf 999999998888899999999999985998799-8799727987576303 No 387 >3iec_E 120 kDa protein, cytotoxicity-associated immunodominant antigen; protein-protein complex, kinase, virulence factor; 2.20A {Helicobacter pylori} Probab=22.67 E-value=37 Score=14.41 Aligned_cols=17 Identities=24% Similarity=0.687 Sum_probs=12.0 Q ss_pred CCCCHHHHHHHHHHHHH Q ss_conf 88988999999999997 Q T0586 10 ADKPIYSQISDWMKKQM 26 (125) Q Consensus 10 ~~~Ply~qI~~~l~~~I 26 (125) .+.|+|.|++..+...| T Consensus 33 pEEpIYaQVAKkV~aKI 49 (125) T 3iec_E 33 PEEPIYTQVAKKVNAKI 49 (125) T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 65217898888877668 No 388 >2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} Probab=22.13 E-value=14 Score=17.14 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=7.6 Q ss_pred CHHHHHHHHCCCHHHHHH Q ss_conf 878999985898789999 Q T0586 39 SVREMGVKLAVNPNTVSR 56 (125) Q Consensus 39 ser~La~~~~VSr~TVr~ 56 (125) |..+||+..|||++|+.+ T Consensus 16 sq~elA~~~gis~~tis~ 33 (158) T 2p5t_A 16 TQLEFARIVGISRNSLSR 33 (158) T ss_dssp ------------------ T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 999999997979999999 No 389 >2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} Probab=21.82 E-value=14 Score=17.14 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.5 Q ss_pred CCCHHHHHHHHCCCHHHH Q ss_conf 788789999858987899 Q T0586 37 LPSVREMGVKLAVNPNTV 54 (125) Q Consensus 37 LPser~La~~~~VSr~TV 54 (125) -|+.|.||.++||+.+.| T Consensus 3 sP~arklA~e~gidl~~v 20 (40) T 2eq8_C 3 APSIRRLARELGVDLTRL 20 (40) T ss_dssp CHHHHHHHHHHTCCGGGC T ss_pred CHHHHHHHHHCCCCHHHC T ss_conf 989999999949989888 No 390 >3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} Probab=21.82 E-value=39 Score=14.30 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=19.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 8789999858987899999999988791673 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) |.-++|+..+++...+.+++..|.+.|+|.. T Consensus 404 sl~dIa~~~~~~~~~i~~~~~~L~~~~Lik~ 434 (435) T 3k9t_A 404 SLLDIAYKSGMEFRRIKYAADALYRVELLKL 434 (435) T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 8999999979199999999999998789152 No 391 >1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B* Probab=21.61 E-value=39 Score=14.28 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=11.5 Q ss_pred HHHHHHCCCHHHHHHHHHHHH Q ss_conf 999985898789999999998 Q T0586 42 EMGVKLAVNPNTVSRAYQELE 62 (125) Q Consensus 42 ~La~~~~VSr~TVr~Al~~L~ 62 (125) +....-+.+..+|++-++... T Consensus 10 E~fRRs~~~k~~vkrl~~~~~ 30 (89) T 1bh9_B 10 EMYRRSAFPKAAIKRLIQSIT 30 (89) T ss_dssp HHHHHCCCCHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHC T ss_conf 999981088899999999974 No 392 >3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V} Probab=21.45 E-value=39 Score=14.26 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 9999999999764989988817887899998589878999 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVS 55 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr 55 (125) ++|.+...+.+....| +.+ |.+++|+.-|||+.|+- T Consensus 15 ~~Il~aa~~l~~e~G~---~~~-ti~~Ia~~agvs~~t~Y 50 (177) T 3kkc_A 15 VAIYNAFISLLQENDY---SKI-TVQDVIGLANVGRSTFY 50 (177) T ss_dssp HHHHHHHHHHTTTSCT---TTC-CHHHHHHHHCCCHHHHT T ss_pred HHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHH T ss_conf 9999999999987497---417-89999998790887652 No 393 >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} Probab=21.37 E-value=40 Score=14.25 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=35.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC Q ss_conf 878999985898789999999998879167317833686288 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125) +..+.|..|+-+..-.|.|+..|-.+|-+..+ ++.+.+.+. T Consensus 20 TaGEVAAhf~w~L~~ar~aLEqLfs~G~LRKR-sSRYR~Kph 60 (68) T 3i71_A 20 TAGEVAAHFGWPLEKARNALEQLFSAGTLRKR-SSRYRLKPH 60 (68) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CCEEEECC- T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHC-CCCCCCCCC T ss_conf 19999999778689999999999865404420-441013642 No 394 >3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} Probab=21.24 E-value=40 Score=14.23 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=16.5 Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8789999858987899999999988 Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125) Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125) |-.++|..++||..||+.-.+.+-. T Consensus 214 ~~~~iA~~l~is~~tv~~h~~~~~~ 238 (258) T 3clo_A 214 SSKEIAATLYISVNTVNRHRQNILE 238 (258) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999999969889999999999999 No 395 >1rep_C REPE54, protein (replication initiation protein); replication initiator, DNA-binding,, replication/DNA complex; HET: DNA; 2.60A {Escherichia coli} SCOP: a.4.5.10 a.4.5.10 PDB: 2z9o_A* Probab=21.16 E-value=40 Score=14.22 Aligned_cols=56 Identities=5% Similarity=0.112 Sum_probs=36.6 Q ss_pred CCHH-HHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHCCCHHH----HHHHHHHHHHCCEEE Q ss_conf 9889-99999999997649899888-----178878999985898789----999999998879167 Q T0586 12 KPIY-SQISDWMKKQMITGEWKGED-----KLPSVREMGVKLAVNPNT----VSRAYQELERAGYIY 68 (125) Q Consensus 12 ~Ply-~qI~~~l~~~I~~G~l~~G~-----~LPser~La~~~~VSr~T----Vr~Al~~L~~~G~i~ 68 (125) ..+. .+|...+...|........+ .+ +..++++.+|++..+ +++|...|....+.. T Consensus 31 lt~~E~rll~~~i~~i~~~~~~~~~~~~~~~i-~~~e~~~~~~i~~~~~y~~lk~a~~~L~~k~i~~ 96 (251) T 1rep_C 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI-HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVF 96 (251) T ss_dssp CCHHHHHHHHHHHHHHHTC------CCCEEEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTTTCEEEC T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE-EHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEE T ss_conf 99999999999999543035776777845999-9999999977771679999999999996284999 No 396 >3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} Probab=21.02 E-value=40 Score=14.20 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=24.6 Q ss_pred CHHHHHHH---HCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 87899998---58987899999999988791673 Q T0586 39 SVREMGVK---LAVNPNTVSRAYQELERAGYIYA 69 (125) Q Consensus 39 ser~La~~---~~VSr~TVr~Al~~L~~~G~i~~ 69 (125) |..+|... .|.+...|..++..|...|||.= T Consensus 34 S~~El~~kL~~kg~~~~~i~~vi~~L~~~gyidD 67 (177) T 3e3v_A 34 TRKEVEDKLRSLDIHEDYISEIINKLIDLDLIND 67 (177) T ss_dssp CHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH T ss_conf 5999999998769999999999999999599898 No 397 >2nra_C PI protein; protein-DNA complex, DNA replication, replication/DNA complex; 3.10A {Escherichia coli} SCOP: a.4.5.10 a.4.5.10 Probab=20.89 E-value=41 Score=14.18 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=34.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHCCCHHH----HHHHHHHHHHCCEE Q ss_conf 999999999997649899888---178878999985898789----99999999887916 Q T0586 15 YSQISDWMKKQMITGEWKGED---KLPSVREMGVKLAVNPNT----VSRAYQELERAGYI 67 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~---~LPser~La~~~~VSr~T----Vr~Al~~L~~~G~i 67 (125) -.+|...+...|-+..-.+.. .+ |..+|++.+|++.+. +++|...|...-+- T Consensus 32 e~rll~~~ls~i~~~~~~~~~~~~~i-s~~el~~~~~~~~~~~y~~Lk~~~~~L~~~~i~ 90 (276) T 2nra_C 32 AKRVMYMALALIDSKEPLERGRVFKI-RAEDLAALAKITPSLAYRQLKEGGKLLGASKIS 90 (276) T ss_dssp HHHHHHHHHHTSCTTSCCCSSCCEEE-EHHHHHHHHTCCHHHHHHHHHHHHHHHHHCBCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEE-EHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEE T ss_conf 99999999997256899888918998-999999997899124799999999999728665 No 398 >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Probab=20.81 E-value=41 Score=14.17 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=37.3 Q ss_pred HHHHHHHCCCC-------CCCCCCCCHHHHHHHHCCC------HHHHHHHHHHHHHCCEEEEC Q ss_conf 99999764989-------9888178878999985898------78999999999887916731 Q T0586 21 WMKKQMITGEW-------KGEDKLPSVREMGVKLAVN------PNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 21 ~l~~~I~~G~l-------~~G~~LPser~La~~~~VS------r~TVr~Al~~L~~~G~i~~~ 70 (125) .|+..|.-|.+ ++|..+ |..+||+.+|++ +.-+.+-++.|...|++... T Consensus 40 ~L~aAveLglfd~La~~~~~~~~~-t~~eLA~~~g~~~~~~~~p~~L~RlLr~L~s~gl~~e~ 101 (372) T 1fp1_D 40 VLNAAIDLNLFEIIAKATPPGAFM-SPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372) T ss_dssp HHHHHHHTTHHHHHHTCSSTTCCB-CHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE T ss_pred HHHHHHHCCCHHHHHHCCCCCCCC-CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 999999878189998579988885-99999986599966675468999999999968961773 No 399 >2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, helper molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A 1rfo_A 1u0p_A 2kbl_A Probab=20.73 E-value=38 Score=14.36 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=29.0 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCEEEECCCCE-EEECCC Q ss_conf 9985898789999999998879167317833-686288 Q T0586 44 GVKLAVNPNTVSRAYQELERAGYIYAKRGMG-SFVTSD 80 (125) Q Consensus 44 a~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G-~~V~~~ 80 (125) ......+-+++...++.|++-|||.--|..| .||+.+ T Consensus 73 v~t~ktkInelvddVntIqEAGyi~~ap~dg~~yvrkd 110 (130) T 2ibl_A 73 IGILKTSLETANSDIKTIQEAGYIPEAPRDGQAYVRKD 110 (130) T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCCCCCSSCCEEEET T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC T ss_conf 88888779999999999886388777986766368407 No 400 >1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=20.70 E-value=41 Score=14.15 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 99999999999764989988817887899998589878999 Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVS 55 (125) Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr 55 (125) -++|.+.-.+.+....| +.+ |.+++|+..|||+.|+- T Consensus 10 re~Il~aa~~l~~~~G~---~~~-t~~~IA~~agvs~~tlY 46 (183) T 1zk8_A 10 LQKIVETAAEIADANGV---QEV-TLASLAQTLGVRSPSLY 46 (183) T ss_dssp HHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTSCHHHHT T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCCCHHH T ss_conf 99999999999997094---405-79999998588943033 No 401 >2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A Probab=20.49 E-value=41 Score=14.13 Aligned_cols=42 Identities=7% Similarity=0.134 Sum_probs=29.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 8988999999999997649899888178878999985898789999 Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125) Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125) ..++=++|.+.-.+.+....| +.+ |.+++|+..|||++|+-. T Consensus 5 ~~~lR~~Il~aA~~l~~~~G~---~~~-t~~~Ia~~agvs~~tlY~ 46 (192) T 2zcm_A 5 HHHMKDKIIDNAITLFSEKGY---DGT-TLDDISKSVNIKKASLYY 46 (192) T ss_dssp ---CHHHHHHHHHHHHHHHCT---TTC-CHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHH T ss_conf 799999999999999987392---507-799999987919889988 No 402 >3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} Probab=20.23 E-value=42 Score=14.09 Aligned_cols=40 Identities=5% Similarity=0.036 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 899999999999764989988817887899998589878999999 Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125) Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125) .=++|.+.-.+.|....| + + |.+++|+.-|||+.|+-.-+ T Consensus 10 ~R~~Il~aA~~l~~~~G~--~--~-t~~~IA~~aGvs~~~iy~~F 49 (190) T 3jsj_A 10 PRERLLEAAAALTYRDGV--G--I-GVEALCKAAGVSKRSMYQLF 49 (190) T ss_dssp HHHHHHHHHHHHHHHHCT--T--C-CHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHCC--C--C-CHHHHHHHHCCCHHHHHHHC T ss_conf 999999999999997698--8--8-29999999790999998882 No 403 >2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77 Probab=20.21 E-value=42 Score=14.09 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.2 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCEEEEC Q ss_conf 998589878999999999887916731 Q T0586 44 GVKLAVNPNTVSRAYQELERAGYIYAK 70 (125) Q Consensus 44 a~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125) .+.+|||-.---+.+..|.++|||.-. T Consensus 23 ~e~~~Ise~~~~~il~mL~d~GyI~Gv 49 (102) T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYIIGV 49 (102) T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEECC T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCEE T ss_conf 887498999999999999977974207 No 404 >2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* Probab=20.03 E-value=42 Score=14.06 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999997649899888178878999985898789999999 Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125) Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125) ++|.+.=...+....| +.. |.+++|+..|||+.|+-.-+. T Consensus 9 ~~Il~AA~~lf~~~G~---~~~-T~~~IA~~aGvs~~tlY~~F~ 48 (234) T 2opt_A 9 DRIVVTALGILDAEGL---DAL-SMRRLAQELKTGHASLYAHVG 48 (234) T ss_dssp HHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTCCHHHHHHHHC T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHCC T ss_conf 9999999999997194---416-899999997858779999879 Done!