Query T0586 3NEU, Listeria innocua Clip11262, 125 residues
Match_columns 125
No_of_seqs 117 out of 8289
Neff 8.0
Searched_HMMs 15564
Date Sun Jun 13 15:30:59 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0586.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0586.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v4ra1 a.4.5.6 (A:1-100) Tran 99.7 7.9E-19 5E-23 142.7 5.2 73 9-81 5-77 (100)
2 d3bwga1 a.4.5.6 (A:5-82) Trans 99.7 1.9E-17 1.2E-21 133.7 8.2 67 16-82 1-67 (78)
3 d1hw1a1 a.4.5.6 (A:5-78) Fatty 99.7 5.1E-17 3.3E-21 130.8 9.8 69 12-80 2-70 (74)
4 d2hs5a1 a.4.5.6 (A:25-93) Puta 99.7 8.9E-17 5.7E-21 129.2 8.6 68 12-80 1-68 (69)
5 d1biaa1 a.4.5.1 (A:1-63) Bioti 98.0 4.2E-06 2.7E-10 59.0 5.6 50 30-80 13-63 (63)
6 d1biaa1 a.4.5.1 (A:1-63) Bioti 98.0 5.9E-06 3.8E-10 58.1 5.6 47 32-79 15-62 (63)
7 d1jhfa1 a.4.5.2 (A:2-72) LexA 97.9 2.7E-05 1.8E-09 53.7 7.6 63 12-79 4-69 (71)
8 d1j5ya1 a.4.5.1 (A:3-67) Putat 97.2 0.00029 1.9E-08 47.0 5.0 43 35-79 21-64 (65)
9 d3ctaa1 a.4.5.28 (A:5-89) Ta10 96.9 0.0026 1.7E-07 40.7 8.0 66 17-83 2-68 (85)
10 d2isya1 a.4.5.24 (A:2-64) Iron 96.9 0.001 6.7E-08 43.3 5.8 39 38-76 24-62 (63)
11 d1zyba1 a.4.5.4 (A:148-220) Pr 96.9 0.001 6.5E-08 43.4 5.6 63 12-79 3-68 (73)
12 d2ev0a1 a.4.5.24 (A:2-62) Mang 96.9 0.00084 5.4E-08 43.9 5.0 39 38-76 22-60 (61)
13 d1ku9a_ a.4.5.36 (A:) DNA-bind 96.8 0.0077 4.9E-07 37.6 9.4 49 34-83 39-91 (151)
14 d2gaua1 a.4.5.4 (A:152-232) Tr 96.7 0.0049 3.2E-07 38.9 8.0 65 14-79 2-70 (81)
15 d2bgca1 a.4.5.4 (A:138-237) Li 96.7 0.0076 4.9E-07 37.6 9.0 66 17-85 5-78 (100)
16 d1i5za1 a.4.5.4 (A:138-206) Ca 96.6 0.006 3.8E-07 38.3 8.0 57 15-72 3-64 (69)
17 d1lnwa_ a.4.5.28 (A:) MexR rep 96.6 0.021 1.4E-06 34.7 10.4 78 36-117 50-131 (141)
18 d1ylfa1 a.4.5.55 (A:5-142) Hyp 96.5 0.003 1.9E-07 40.3 5.7 46 32-78 19-64 (138)
19 d3broa1 a.4.5.28 (A:3-137) Tra 96.5 0.013 8.5E-07 36.1 8.9 81 32-116 41-125 (135)
20 d1ft9a1 a.4.5.4 (A:134-213) CO 96.4 0.006 3.8E-07 38.3 6.9 66 16-82 4-74 (80)
21 d1sfxa_ a.4.5.50 (A:) Hypothet 96.3 0.019 1.2E-06 35.0 9.1 60 13-82 20-83 (109)
22 d2d1ha1 a.4.5.50 (A:1-109) Hyp 96.3 0.0078 5E-07 37.6 6.7 39 34-73 34-72 (109)
23 d1s3ja_ a.4.5.28 (A:) Putative 96.2 0.018 1.1E-06 35.2 8.5 76 38-116 50-129 (143)
24 d2fbha1 a.4.5.28 (A:8-144) Tra 96.2 0.057 3.7E-06 31.9 11.1 74 38-116 44-123 (137)
25 d3deua1 a.4.5.28 (A:2-141) Tra 96.2 0.036 2.3E-06 33.2 9.8 76 35-116 45-126 (140)
26 d1stza1 a.4.5.51 (A:14-100) He 96.1 0.0021 1.4E-07 41.3 3.3 60 14-78 5-66 (87)
27 d2etha1 a.4.5.28 (A:1-140) Put 96.1 0.066 4.2E-06 31.5 10.7 76 38-116 47-126 (140)
28 d1sfua_ a.4.5.19 (A:) 34L {Yab 96.0 0.018 1.1E-06 35.2 7.5 55 17-74 7-61 (70)
29 d2hr3a1 a.4.5.28 (A:2-146) Pro 95.9 0.032 2.1E-06 33.5 8.6 38 36-74 49-86 (145)
30 d3e5ua1 a.4.5.4 (A:148-227) Ch 95.8 0.0065 4.2E-07 38.1 4.7 64 15-79 3-71 (80)
31 d1r1ta_ a.4.5.5 (A:) SmtB repr 95.7 0.028 1.8E-06 33.9 7.7 63 18-83 20-83 (98)
32 d1jgsa_ a.4.5.28 (A:) Multiple 95.7 0.031 2E-06 33.6 7.9 77 38-116 49-129 (138)
33 d1xd7a_ a.4.5.55 (A:) Hypothet 95.6 0.011 6.9E-07 36.7 5.2 57 19-81 6-63 (127)
34 d1pdnc_ a.4.1.5 (C:) Paired pr 95.5 0.012 7.6E-07 36.4 5.0 62 7-76 10-71 (123)
35 d1lj9a_ a.4.5.28 (A:) Transcri 95.5 0.071 4.6E-06 31.3 8.9 42 37-79 44-89 (144)
36 d1ub9a_ a.4.5.28 (A:) Hypothet 95.5 0.025 1.6E-06 34.2 6.6 46 36-82 30-79 (100)
37 d2a61a1 a.4.5.28 (A:5-143) Tra 95.3 0.045 2.9E-06 32.5 7.5 44 39-82 46-93 (139)
38 d1mkma1 a.4.5.33 (A:1-75) Tran 95.1 0.048 3.1E-06 32.4 7.2 43 35-79 19-61 (75)
39 d2zcwa1 a.4.5.4 (A:118-199) Tr 95.1 0.018 1.2E-06 35.1 5.0 63 15-79 3-70 (82)
40 d2fbia1 a.4.5.28 (A:5-140) Pro 95.1 0.056 3.6E-06 31.9 7.5 44 37-81 45-92 (136)
41 d2bv6a1 a.4.5.28 (A:5-140) Tra 95.1 0.07 4.5E-06 31.3 7.9 76 36-117 48-127 (136)
42 d2g9wa1 a.4.5.39 (A:3-124) Hyp 94.8 0.097 6.3E-06 30.4 8.0 53 24-77 10-66 (122)
43 d1okra_ a.4.5.39 (A:) Methicil 94.8 0.099 6.3E-06 30.3 7.9 82 36-118 21-115 (120)
44 d1dpua_ a.4.5.16 (A:) C-termin 94.7 0.033 2.1E-06 33.5 5.5 58 12-76 5-63 (69)
45 d1z05a1 a.4.5.63 (A:10-80) Tra 94.7 0.023 1.5E-06 34.5 4.5 35 35-70 19-53 (71)
46 d2fbka1 a.4.5.28 (A:8-179) Tra 94.6 0.07 4.5E-06 31.3 6.8 38 35-73 78-115 (172)
47 d1p4xa1 a.4.5.28 (A:1-125) Sta 94.5 0.037 2.4E-06 33.1 5.4 50 33-83 47-100 (125)
48 d2p4wa1 a.4.5.64 (A:1-194) Tra 94.5 0.019 1.2E-06 35.1 3.8 50 19-71 13-62 (194)
49 d1lvaa3 a.4.5.35 (A:511-574) C 94.5 0.088 5.7E-06 30.6 7.2 57 16-76 6-62 (64)
50 d2cfxa1 a.4.5.32 (A:1-63) Tran 94.5 0.017 1.1E-06 35.3 3.5 35 34-69 17-51 (63)
51 d2frha1 a.4.5.28 (A:102-216) P 94.2 0.018 1.2E-06 35.1 3.1 50 32-82 45-98 (115)
52 d2cg4a1 a.4.5.32 (A:4-66) Regu 94.0 0.019 1.2E-06 35.1 2.8 36 33-69 16-51 (63)
53 d1p4xa2 a.4.5.28 (A:126-250) S 93.7 0.031 2E-06 33.7 3.5 50 33-83 46-99 (125)
54 d1z91a1 a.4.5.28 (A:8-144) Org 93.4 0.035 2.2E-06 33.3 3.5 38 36-74 47-84 (137)
55 d1ulya_ a.4.5.58 (A:) Hypothet 93.4 0.059 3.8E-06 31.8 4.5 50 18-70 16-65 (190)
56 d1u2wa1 a.4.5.5 (A:12-119) Cad 93.2 0.041 2.6E-06 32.8 3.5 59 16-77 26-84 (108)
57 d2fxaa1 a.4.5.28 (A:6-167) Pro 93.1 0.055 3.5E-06 32.0 4.0 37 36-73 55-91 (162)
58 d1i1ga1 a.4.5.32 (A:2-61) LprA 93.0 0.025 1.6E-06 34.2 2.2 35 34-69 15-49 (60)
59 d1hsja1 a.4.5.28 (A:373-487) S 92.9 0.035 2.2E-06 33.3 2.7 49 33-82 45-97 (115)
60 d1r1ua_ a.4.5.5 (A:) Metal-sen 92.8 0.34 2.2E-05 26.8 7.8 37 39-76 33-69 (94)
61 d1k78a1 a.4.1.5 (A:19-81) Pax- 92.5 0.15 9.7E-06 29.1 5.6 54 6-67 7-60 (63)
62 d1sd4a_ a.4.5.39 (A:) Penicill 92.4 0.45 2.9E-05 26.0 8.8 92 20-117 9-113 (122)
63 d2p8ta1 a.4.5.72 (A:14-82) Hyp 92.4 0.2 1.3E-05 28.3 6.1 47 35-83 16-62 (69)
64 d2cyya1 a.4.5.32 (A:5-64) Puta 92.3 0.034 2.2E-06 33.3 2.1 36 34-70 15-50 (60)
65 d2b0la1 a.4.5.66 (A:167-257) G 92.3 0.24 1.5E-05 27.8 6.4 56 28-83 25-82 (91)
66 d2hoea1 a.4.5.63 (A:10-71) N-a 92.1 0.09 5.8E-06 30.6 4.1 33 37-70 13-45 (62)
67 d2v7fa1 a.4.5.84 (A:2-150) Rib 91.8 0.22 1.4E-05 28.0 5.8 63 15-84 51-127 (149)
68 d1z6ra1 a.4.5.63 (A:12-81) Mlc 91.7 0.094 6E-06 30.5 3.8 36 34-70 17-52 (70)
69 d1q1ha_ a.4.5.41 (A:) Transcri 89.5 0.17 1.1E-05 28.7 3.5 43 34-77 31-77 (88)
70 d1p6ra_ a.4.5.39 (A:) Penicill 87.8 0.4 2.5E-05 26.3 4.4 52 20-77 12-67 (82)
71 d2hzta1 a.4.5.69 (A:4-98) Puta 86.5 1.1 7.1E-05 23.4 6.1 52 39-90 26-84 (95)
72 d2dt5a1 a.4.5.38 (A:4-77) Tran 85.7 0.5 3.2E-05 25.7 4.0 56 12-79 8-63 (74)
73 d1t6sa1 a.4.5.60 (A:1-85) Segr 85.5 1.3 8.1E-05 23.0 6.0 60 22-82 8-75 (85)
74 d1hlva1 a.4.1.7 (A:1-66) DNA-b 85.4 0.45 2.9E-05 26.0 3.7 27 33-60 22-48 (66)
75 d2j5pa1 a.4.5.67 (A:1261-1329) 85.2 1.4 9.2E-05 22.7 6.2 58 9-76 3-60 (69)
76 d2ve8a1 a.4.5.67 (A:745-811) D 84.2 1.6 0.0001 22.3 6.1 56 11-76 2-57 (67)
77 d1z7ua1 a.4.5.69 (A:1-108) Hyp 84.2 1.1 7.1E-05 23.4 5.2 51 39-89 34-91 (108)
78 d2ra5a1 d.190.1.2 (A:66-245) P 83.3 0.19 1.2E-05 28.4 1.0 18 65-82 1-18 (180)
79 d2f2ea1 a.4.5.69 (A:5-146) Hyp 83.1 1.4 8.8E-05 22.8 5.3 32 39-70 35-66 (142)
80 d1efaa1 a.35.1.5 (A:2-60) Lac 83.0 0.37 2.4E-05 26.5 2.4 22 38-59 3-24 (59)
81 d2gxba1 a.4.5.19 (A:140-198) Z 82.0 1.4 9.2E-05 22.7 5.1 45 29-74 9-53 (59)
82 d1ijwc_ a.4.1.2 (C:) HIN recom 81.5 0.45 2.9E-05 26.0 2.4 30 20-57 12-41 (47)
83 d1qpza1 a.35.1.5 (A:2-58) Puri 81.2 0.68 4.4E-05 24.8 3.2 21 39-59 2-22 (57)
84 d1yyva1 a.4.5.69 (A:9-122) Put 81.2 1.7 0.00011 22.2 5.2 79 8-89 8-96 (114)
85 d1rr7a_ a.4.1.14 (A:) Middle o 81.0 1.3 8.2E-05 23.0 4.5 48 13-64 46-93 (94)
86 d2fswa1 a.4.5.69 (A:3-104) Hyp 79.8 1.6 0.0001 22.3 4.7 34 39-72 35-69 (102)
87 d2hsga1 a.35.1.5 (A:2-58) Gluc 79.4 0.64 4.1E-05 25.0 2.6 21 39-59 3-23 (57)
88 d1uxda_ a.35.1.5 (A:) Fructose 78.7 0.72 4.6E-05 24.6 2.7 21 39-59 2-22 (59)
89 d1mzba_ a.4.5.42 (A:) Ferric u 78.3 1.4 9.1E-05 22.7 4.0 40 35-74 30-74 (134)
90 d1aisb2 a.74.1.2 (B:1206-1300) 77.6 1.7 0.00011 22.2 4.3 30 34-64 58-87 (95)
91 d1r8da_ a.6.1.3 (A:) Multidrug 76.8 2.9 0.00019 20.6 8.7 38 39-80 4-43 (109)
92 d2obpa1 a.4.5.71 (A:12-92) Put 75.3 3.2 0.00021 20.4 7.1 57 16-76 7-66 (81)
93 d1vola2 a.74.1.2 (A:208-316) T 75.1 2 0.00013 21.8 4.0 31 33-64 58-88 (109)
94 d1tw3a1 a.4.5.29 (A:14-98) Car 75.0 2.7 0.00018 20.8 4.8 50 22-79 26-75 (85)
95 d1r8ea1 a.6.1.3 (A:3-120) Tran 72.9 3.6 0.00023 20.0 7.1 38 38-79 4-44 (118)
96 d1fnna1 a.4.5.11 (A:277-388) C 72.9 1.4 8.8E-05 22.8 2.8 65 11-75 8-82 (112)
97 d2o3fa1 a.4.1.20 (A:1-83) Puta 71.1 1.3 8.6E-05 22.9 2.4 52 12-69 17-68 (83)
98 d1d5ya1 a.4.1.8 (A:3-56) Rob t 70.9 4 0.00025 19.8 4.8 43 17-63 3-45 (54)
99 d2htja1 a.4.5.73 (A:1-73) P fi 68.6 4 0.00026 19.7 4.4 36 38-73 15-50 (73)
100 d1xsva_ a.4.13.3 (A:) Hypothet 68.4 2.5 0.00016 21.1 3.3 24 36-60 34-57 (106)
101 d1aisb1 a.74.1.2 (B:1108-1205) 67.6 3.8 0.00024 19.9 4.1 29 34-63 60-88 (98)
102 d1s7oa_ a.4.13.3 (A:) Hypothet 66.8 2.9 0.00019 20.6 3.4 27 36-63 32-62 (106)
103 d1q06a_ a.6.1.3 (A:) Transcrip 66.3 5 0.00032 19.1 9.0 38 39-80 2-41 (127)
104 d2fq3a1 a.4.1.18 (A:311-395) T 65.7 5 0.00032 19.1 4.5 51 17-68 31-82 (85)
105 d1jhga_ a.4.12.1 (A:) Trp repr 64.8 4.4 0.00029 19.5 4.0 26 39-64 60-85 (101)
106 d1gdta1 a.4.1.2 (A:141-183) ga 64.4 3.2 0.00021 20.4 3.3 21 39-59 20-40 (43)
107 d1r7ja_ a.4.5.49 (A:) Sso10a ( 64.2 5.5 0.00035 18.8 9.1 66 16-90 5-70 (90)
108 d1j9ia_ a.6.1.5 (A:) Terminase 64.0 2.2 0.00014 21.4 2.4 30 39-72 4-33 (68)
109 d1jhga_ a.4.12.1 (A:) Trp repr 63.9 4.7 0.0003 19.3 4.0 26 39-64 60-85 (101)
110 d1xmka1 a.4.5.19 (A:294-366) Z 63.9 4.7 0.0003 19.3 4.0 40 39-78 21-63 (73)
111 d2jn6a1 a.4.1.19 (A:1-89) Unch 63.7 3 0.00019 20.6 3.0 27 39-65 25-51 (89)
112 d1ixca1 a.4.5.37 (A:1-89) LysR 61.5 4.5 0.00029 19.4 3.6 50 38-87 16-67 (89)
113 d1xmaa_ a.4.5.61 (A:) Predicte 61.4 3.2 0.00021 20.4 2.8 24 47-70 38-61 (103)
114 d2ppxa1 a.35.1.3 (A:30-91) Unc 60.8 3.2 0.00021 20.4 2.7 20 37-57 13-32 (62)
115 d2esna1 a.4.5.37 (A:3-91) Prob 60.6 6.4 0.00041 18.4 6.5 49 39-88 22-73 (89)
116 d1vi0a1 a.4.1.9 (A:6-77) Hypot 60.5 6 0.00038 18.6 4.1 42 13-58 1-42 (72)
117 d2o38a1 a.35.1.13 (A:28-116) H 60.3 6.4 0.00041 18.4 5.2 39 14-59 8-46 (89)
118 d1qzza1 a.4.5.29 (A:10-101) Ac 60.0 6.5 0.00042 18.4 4.5 41 36-77 40-81 (92)
119 d2p7vb1 a.4.13.2 (B:546-613) S 60.0 6.5 0.00042 18.4 4.3 30 32-62 21-54 (68)
120 d2auwa1 a.35.1.10 (A:88-154) H 58.1 3.7 0.00024 19.9 2.7 21 36-57 14-34 (67)
121 d1rp3a2 a.4.13.2 (A:164-234) S 57.3 5.1 0.00033 19.1 3.3 25 36-61 37-61 (71)
122 d1fsea_ a.4.6.2 (A:) Germinati 56.4 7 0.00045 18.1 3.9 25 39-63 21-45 (67)
123 d1ttya_ a.4.13.2 (A:) Sigma70 55.9 7.6 0.00049 17.9 4.2 29 33-62 35-67 (87)
124 d1l0oc_ a.4.13.2 (C:) SigmaF { 55.4 7.1 0.00045 18.1 3.7 27 35-61 29-55 (57)
125 d2icta1 a.35.1.3 (A:8-94) Anti 55.4 5.7 0.00037 18.7 3.3 22 37-59 15-36 (87)
126 d1r71a_ a.4.14.1 (A:) Transcri 55.3 7.8 0.0005 17.9 4.3 37 18-62 19-55 (114)
127 d1vola1 a.74.1.2 (A:113-207) T 55.3 5.3 0.00034 19.0 3.1 29 34-63 60-88 (95)
128 d1ku3a_ a.4.13.2 (A:) Sigma70 54.9 7.9 0.00051 17.8 4.2 30 33-63 25-58 (61)
129 d2b5aa1 a.35.1.3 (A:1-77) Regu 54.8 7.7 0.0005 17.9 3.9 38 14-58 7-44 (77)
130 d1rp3a1 a.4.13.1 (A:87-163) Si 52.6 8.6 0.00055 17.6 3.8 28 36-63 25-52 (77)
131 d1ldja1 a.4.5.34 (A:687-776) A 52.6 8.5 0.00055 17.6 3.8 37 41-77 50-87 (90)
132 d1or7a1 a.4.13.2 (A:120-187) S 51.9 7 0.00045 18.1 3.3 23 37-60 35-57 (68)
133 d1vz0a1 a.4.14.1 (A:116-208) P 51.5 5.8 0.00037 18.7 2.8 24 39-62 21-44 (93)
134 d1r71a_ a.4.14.1 (A:) Transcri 51.2 4.9 0.00031 19.2 2.3 40 18-65 19-58 (114)
135 d1o57a1 a.4.5.40 (A:2-74) N-te 50.9 9.1 0.00058 17.4 5.0 41 32-73 18-64 (73)
136 d1l3la1 a.4.6.2 (A:170-234) Qu 49.1 9.7 0.00062 17.2 3.9 25 39-63 21-45 (65)
137 d1a04a1 a.4.6.2 (A:150-216) Ni 49.0 9.7 0.00062 17.2 3.9 35 21-63 13-47 (67)
138 d1yg2a_ a.4.5.61 (A:) Hypothet 48.9 8.8 0.00057 17.5 3.4 24 47-70 32-55 (178)
139 d1ntca_ a.4.1.12 (A:) DNA-bind 48.6 7.4 0.00048 18.0 3.0 48 13-62 42-89 (91)
140 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 48.1 10 0.00064 17.1 4.1 42 33-76 13-54 (57)
141 d1wi9a_ a.4.5.47 (A:) Hypothet 47.9 7.3 0.00047 18.0 2.8 46 35-80 19-67 (72)
142 d1yioa1 a.4.6.2 (A:131-200) Re 45.2 11 0.00071 16.8 3.9 25 39-63 29-53 (70)
143 d1ldja3 e.40.1.1 (A:411-686) C 44.3 11 0.00074 16.7 4.1 43 31-74 204-246 (276)
144 d1bl0a1 a.4.1.8 (A:9-62) MarA 44.1 12 0.00074 16.7 5.7 43 19-65 5-47 (54)
145 d2a6ca1 a.35.1.13 (A:1-69) HTH 43.6 12 0.00075 16.7 5.1 36 16-58 5-40 (69)
146 d2croa_ a.35.1.2 (A:) cro 434 41.9 9.7 0.00062 17.2 2.7 20 37-57 17-36 (65)
147 d1nera_ a.35.1.2 (A:) Ner {Bac 41.8 7.3 0.00047 18.0 2.1 33 25-60 13-45 (74)
148 d1iuya_ a.4.5.34 (A:) Cullin-3 41.5 10 0.00066 17.1 2.8 35 43-77 54-89 (92)
149 d1p4wa_ a.4.6.2 (A:) Transcrip 41.2 13 0.00082 16.4 3.5 25 39-63 39-63 (87)
150 d1utxa_ a.35.1.3 (A:) Putative 40.9 10 0.00065 17.1 2.7 20 37-57 15-34 (66)
151 d1lmb3_ a.35.1.2 (3:) lambda C 40.4 7.9 0.0005 17.8 2.0 41 14-57 5-45 (87)
152 d1etxa_ a.4.1.12 (A:) FIS prot 39.6 13 0.00082 16.4 3.0 21 40-60 65-85 (89)
153 d1lvaa4 a.4.5.35 (A:575-634) C 39.3 14 0.00088 16.2 6.6 41 36-77 18-58 (60)
154 d1pyya2 d.11.1.1 (A:693-750) P 39.1 6.4 0.00041 18.4 1.4 31 50-80 8-38 (58)
155 d1ldja3 e.40.1.1 (A:411-686) C 38.8 14 0.00089 16.2 4.1 41 31-72 204-244 (276)
156 d1b0na2 a.35.1.3 (A:1-68) SinR 38.0 12 0.00079 16.5 2.7 22 36-58 14-35 (68)
157 d1xs9a_ i.11.1.1 (A:) Ternary 37.9 7.1 0.00046 18.1 1.5 43 15-61 9-51 (129)
158 d1i3ja_ d.285.1.1 (A:) DNA-bin 37.6 14 0.00093 16.1 3.1 27 33-59 60-86 (96)
159 d1y9qa1 a.35.1.8 (A:4-82) Prob 37.4 15 0.00094 16.1 5.2 38 14-58 5-42 (79)
160 d1x57a1 a.35.1.12 (A:8-85) End 37.3 13 0.00081 16.5 2.7 20 37-57 20-39 (78)
161 d2r1jl1 a.35.1.2 (L:3-68) P22 37.2 13 0.00081 16.5 2.7 23 36-59 16-38 (66)
162 d2esha1 a.4.5.61 (A:4-117) Hyp 36.9 15 0.00095 16.0 4.9 24 48-71 43-66 (114)
163 d1umqa_ a.4.1.12 (A:) Photosyn 36.6 15 0.00096 16.0 3.2 42 12-60 15-56 (60)
164 d1wj5a_ a.4.5.59 (A:) OB fold- 36.4 15 0.00097 16.0 3.4 70 13-82 20-111 (120)
165 d2iu5a1 a.4.1.9 (A:1-71) Trans 35.8 15 0.00099 15.9 3.3 39 14-56 7-45 (71)
166 d2g7ga1 a.4.1.9 (A:9-73) Putat 35.0 16 0.001 15.8 3.7 36 16-57 4-39 (65)
167 d1g2ha_ a.4.1.12 (A:) Transcri 34.8 12 0.0008 16.5 2.3 23 38-60 34-56 (61)
168 d1r69a_ a.35.1.2 (A:) 434 C1 r 34.6 15 0.00095 16.0 2.7 19 39-57 16-34 (63)
169 d1z0xa1 a.4.1.9 (A:4-71) Trans 34.3 14 0.00088 16.2 2.5 37 16-56 5-42 (68)
170 d1y7ya1 a.35.1.3 (A:5-73) Rest 34.1 16 0.0011 15.7 4.7 35 17-58 9-43 (69)
171 d2ofya1 a.35.1.3 (A:3-84) Puta 34.1 16 0.001 15.9 2.7 20 37-57 26-45 (82)
172 d1b9ma1 a.4.5.8 (A:-1-126) N-t 33.9 17 0.0011 15.7 8.4 53 38-90 33-92 (127)
173 d2fbqa1 a.4.1.9 (A:2-80) Trans 33.8 17 0.0011 15.7 4.2 41 15-59 6-46 (79)
174 d1qmea1 d.11.1.1 (A:632-692) P 33.7 6 0.00038 18.6 0.6 37 35-80 16-52 (72)
175 d1ys7a1 a.4.6.1 (A:128-233) Tr 33.5 17 0.0011 15.7 2.9 45 33-78 48-104 (106)
176 d2np5a1 a.4.1.9 (A:9-77) Trans 33.5 17 0.0011 15.7 3.7 39 16-58 4-42 (69)
177 d2g7la1 a.4.1.9 (A:16-83) Puta 32.5 17 0.0011 15.6 3.9 38 15-56 6-43 (68)
178 d1dgwa_ b.82.1.2 (A:) Seed sto 32.3 9.1 0.00059 17.4 1.3 34 37-71 145-178 (178)
179 d2p5ka1 a.4.5.3 (A:2-64) Argin 31.0 18 0.0012 15.4 3.4 53 20-77 7-60 (63)
180 d2dk5a1 a.4.5.85 (A:8-85) DNA- 30.6 19 0.0012 15.3 6.7 50 16-73 16-65 (78)
181 d1zk8a1 a.4.1.9 (A:6-77) Trans 30.6 17 0.0011 15.6 2.5 37 16-56 6-42 (72)
182 d1mgta1 a.4.2.1 (A:89-169) O6- 30.6 19 0.0012 15.3 4.1 44 12-61 2-45 (81)
183 d2gfna1 a.4.1.9 (A:4-80) Proba 30.5 16 0.001 15.7 2.4 40 15-58 8-47 (77)
184 d2ao9a1 a.4.1.17 (A:13-132) Ph 30.4 17 0.0011 15.7 2.4 21 35-56 35-55 (120)
185 d2fnaa1 a.4.5.11 (A:284-356) H 30.0 19 0.0012 15.3 5.6 62 14-80 3-66 (73)
186 d1u5ta2 a.4.5.54 (A:165-232) V 29.7 19 0.0012 15.2 4.1 37 37-73 17-53 (68)
187 d1pb6a1 a.4.1.9 (A:14-85) Hypo 29.3 19 0.0012 15.3 2.5 39 16-58 7-45 (72)
188 d1rtya_ a.25.2.2 (A:) Putative 28.3 12 0.00079 16.5 1.4 42 22-64 75-118 (161)
189 d2vkva1 a.4.1.9 (A:6-67) Tetra 28.2 19 0.0012 15.3 2.3 23 35-58 18-40 (62)
190 d1gh6a_ a.2.3.1 (A:) Large T a 27.4 12 0.0008 16.5 1.3 31 40-74 7-43 (114)
191 d1tbxa_ a.4.5.48 (A:) Hypothet 27.1 21 0.0014 14.9 2.8 42 41-82 28-72 (94)
192 d1u5tb1 a.4.5.54 (B:396-489) V 27.0 22 0.0014 14.9 5.0 72 6-77 4-91 (94)
193 d1mgta1 a.4.2.1 (A:89-169) O6- 26.7 22 0.0014 14.9 4.6 44 12-61 2-45 (81)
194 d2g7sa1 a.4.1.9 (A:3-76) Putat 26.5 21 0.0014 14.9 2.4 40 15-58 6-45 (74)
195 d1t56a1 a.4.1.9 (A:22-94) Ethr 26.1 22 0.0014 14.8 4.3 39 16-58 6-44 (73)
196 d2hyja1 a.4.1.9 (A:8-82) Putat 26.1 22 0.0014 14.8 3.7 37 16-56 8-44 (75)
197 d1fxza1 b.82.1.2 (A:10-248) Se 26.0 22 0.0014 14.9 2.3 33 39-71 197-231 (239)
198 d1y0ua_ a.4.5.5 (A:) Putative 25.8 23 0.0015 14.8 6.9 53 18-79 32-84 (89)
199 d1xgsa1 a.4.5.25 (A:195-271) M 25.7 7 0.00045 18.1 -0.2 57 8-71 14-72 (77)
200 d1pyya1 d.11.1.1 (A:632-692) P 24.8 12 0.00079 16.6 0.9 28 52-79 13-40 (61)
201 d1v7ba1 a.4.1.9 (A:1-74) Trans 24.7 24 0.0015 14.7 4.7 40 15-58 6-45 (74)
202 d1bh9b_ a.22.1.3 (B:) TAF(II)2 24.5 24 0.0015 14.6 2.6 21 42-62 10-30 (89)
203 d1t1ea2 d.58.3.2 (A:12-190) Pr 24.3 24 0.0015 14.6 8.6 63 15-79 40-104 (179)
204 d2cyua1 a.9.1.1 (A:2-40) E3-bi 23.1 16 0.001 15.8 1.2 17 38-54 3-19 (39)
205 d1opca_ a.4.6.1 (A:) OmpR {Esc 23.1 25 0.0016 14.5 3.9 63 13-80 24-99 (99)
206 d2fx0a1 a.4.1.9 (A:4-76) Hemol 23.0 25 0.0016 14.5 4.1 41 15-59 6-46 (73)
207 d2fq4a1 a.4.1.9 (A:9-77) Trans 22.3 26 0.0017 14.4 4.1 40 15-58 6-45 (69)
208 d1kgsa1 a.4.6.1 (A:124-225) Ph 21.8 27 0.0017 14.3 3.5 46 33-79 44-101 (102)
209 d1ui5a1 a.4.1.9 (A:5-75) A-fac 21.7 27 0.0017 14.3 2.4 41 14-58 6-46 (71)
210 d2o7ta1 a.4.1.9 (A:1-78) Trans 21.6 27 0.0017 14.3 4.3 38 16-57 10-47 (78)
211 d1ku2a1 a.4.13.1 (A:273-332) S 21.4 27 0.0018 14.2 2.5 25 35-59 26-52 (60)
212 d1noga_ a.25.2.2 (A:) Hypothet 21.4 20 0.0013 15.1 1.4 35 30-64 74-110 (149)
213 d1usta_ a.4.5.13 (A:) Histone 20.4 29 0.0018 14.1 6.1 65 10-77 4-76 (92)
No 1
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=99.74 E-value=7.9e-19 Score=142.75 Aligned_cols=73 Identities=25% Similarity=0.456 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCH
Q ss_conf 8889889999999999976498998881788789999858987899999999988791673178336862880
Q T0586 9 HADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125)
Q Consensus 9 ~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125)
.+..+.|+||+++|++.|.+|.|+||++|||+++||++||||++|||+||..|+++|+|++++|+||||+...
T Consensus 5 ~p~~~~y~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~ 77 (100)
T d1v4ra1 5 APEGKGYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEKNP 77 (100)
T ss_dssp CCSSCCHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCC
T ss_conf 9998799999999999998499999398836999999988798999999999998896899648778977897
No 2
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=99.70 E-value=1.9e-17 Score=133.68 Aligned_cols=67 Identities=27% Similarity=0.454 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHH
Q ss_conf 9999999999764989988817887899998589878999999999887916731783368628807
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKA 82 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~ 82 (125)
+||+++|+..|.+|.|+||++|||+++||+.|||||+|||+||..|+.+|+|++++|+|+||.....
T Consensus 1 qqi~~~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~~ 67 (78)
T d3bwga1 1 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKR 67 (78)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCCH
T ss_conf 9799999999984999993999379999999887989999999999988938997185789835987
No 3
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.70 E-value=5.1e-17 Score=130.82 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC
Q ss_conf 988999999999997649899888178878999985898789999999998879167317833686288
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
.+.+.+++++|++.|.+|.|+||++|||+++||+.|||||+|||+||+.|+.+|+|++++|+|+||++.
T Consensus 2 ~s~~~~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 70 (74)
T d1hw1a1 2 QSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNF 70 (74)
T ss_dssp CSHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECCH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEEECCC
T ss_conf 798999999999999849999949983499999998979899999999999889189980844798787
No 4
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=99.67 E-value=8.9e-17 Score=129.23 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC
Q ss_conf 988999999999997649899888178878999985898789999999998879167317833686288
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
++.|+||++.|++.|.+|.|+||++|| +++||+.|||||+|||+||..|+++|+|+++||+|+||+..
T Consensus 1 Ts~~~qi~~~l~~~I~~g~~~~G~~l~-~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~V~~p 68 (69)
T d2hs5a1 1 TSRTTRVAGILRDAIIDGTFRPGARLS-EPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVP 68 (69)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCC
T ss_conf 988999999999999829999929669-99999998979899999999999889689975977896478
No 5
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1biba1 d2ewna1 d1hxda1
Probab=98.03 E-value=4.2e-06 Score=59.03 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=44.1
Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCE-EEECCCCEEEECCC
Q ss_conf 8998881788789999858987899999999988791-67317833686288
Q T0586 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGY-IYAKRGMGSFVTSD 80 (125)
Q Consensus 30 ~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~-i~~~~g~G~~V~~~ 80 (125)
.|..+..+ |..+||+.||||+.||++.++.|++.|+ |++.+|+|+.+..+
T Consensus 13 ~L~~~~~~-s~~eLa~~l~vS~~Tv~r~i~~L~~~G~~i~s~~g~GY~L~~p 63 (63)
T d1biaa1 13 LLANGEFH-SGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPEP 63 (63)
T ss_dssp HHTTSSCB-CHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSSC
T ss_pred HHHCCCCC-CHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEECCC
T ss_conf 99828983-7789998709998357899999987698167326972030799
No 6
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.98 E-value=5.9e-06 Score=58.11 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=41.8
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCE-EEECCCCEEEECC
Q ss_conf 98881788789999858987899999999988791-6731783368628
Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGY-IYAKRGMGSFVTS 79 (125)
Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~-i~~~~g~G~~V~~ 79 (125)
..|..+ |-.+||+.||||+.||++.++.|++.|+ |++.+|+|+.+.+
T Consensus 15 ~~~~~~-s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~g~GY~L~~ 62 (63)
T d1biaa1 15 ANGEFH-SGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (63)
T ss_dssp TTSSCB-CHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCEEEECC
T ss_conf 978958-799999998939999999999999879937970798388197
No 7
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=97.89 E-value=2.7e-05 Score=53.71 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCEEEECCCC--EEEECC
Q ss_conf 98899999999999764989988817887899998589-878999999999887916731783--368628
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV-NPNTVSRAYQELERAGYIYAKRGM--GSFVTS 79 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~V-Sr~TVr~Al~~L~~~G~i~~~~g~--G~~V~~ 79 (125)
+|...+|.++|...|....++ ||.+++|+.||+ |++||+.-+..|++.|||...+|+ |..|..
T Consensus 4 T~rQ~~vL~~I~~~~~~~G~~-----Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~~~R~i~i~~ 69 (71)
T d1jhfa1 4 TARQQEVFDLIRDHISQTGMP-----PTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQ 69 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC-----CCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSSSCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCCCEEEECC
T ss_conf 999999999999999982889-----889999977299999999999999999759306899985167327
No 8
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.18 E-value=0.00029 Score=46.95 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCE-EEECCCCEEEECC
Q ss_conf 81788789999858987899999999988791-6731783368628
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGY-IYAKRGMGSFVTS 79 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~-i~~~~g~G~~V~~ 79 (125)
..+ |..+||+.||||+.||++-+..|++.|+ |.+.+| |+...+
T Consensus 21 ~~v-s~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~g-GY~L~~ 64 (65)
T d1j5ya1 21 EPV-SGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPR-GYVLAG 64 (65)
T ss_dssp SCB-CHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETT-EEECCT
T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC-CEEECC
T ss_conf 978-59999999798999999999999987992799679-888188
No 9
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=96.93 E-value=0.0026 Score=40.72 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC-CEEEECCCHHH
Q ss_conf 99999999976498998881788789999858987899999999988791673178-33686288078
Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGSFVTSDKAL 83 (125)
Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g-~G~~V~~~~~~ 83 (125)
|-+..|..-...+....+..| |..+||+.+++++++|.+.++.|++.|||.+.+- ++.++.-.+..
T Consensus 2 ~~~~~l~~l~~~~~~~~~~~l-t~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G 68 (85)
T d3ctaa1 2 QYYRAIKKIKEAAEASNRAYL-TSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKG 68 (85)
T ss_dssp HHHHHHHHHHHHTTTSSEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEECHHH
T ss_conf 499999999982601589998-8999999988788789999999998798043124554300078999
No 10
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.90 E-value=0.001 Score=43.31 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 887899998589878999999999887916731783368
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
++..++|+.+|||+.||.++++.|.++|||...+.+|..
T Consensus 24 v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~y~~i~ 62 (63)
T d2isya1 24 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLE 62 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEE
T ss_conf 709999999689944399999999988898876898414
No 11
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=96.88 E-value=0.001 Score=43.38 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 988999999999997649899888---17887899998589878999999999887916731783368628
Q T0586 12 KPIYSQISDWMKKQMITGEWKGED---KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~---~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
..+-++|+.+|...-. -+.|+ .+ |-.+||..+|+||.||.++++.|+++|+|....| ...|.+
T Consensus 3 ~dv~~Rla~~Ll~~~~---~~~~~~~i~l-t~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~~~-~i~I~d 68 (73)
T d1zyba1 3 LDLKSKIIRFFLSHCE---KPQGEKTFKV-KMDDLARCLDDTRLNISKTLNELQDNGLIELHRK-EILIPD 68 (73)
T ss_dssp CSHHHHHHHHHHTTCS---SSSSCEEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETT-EEEESC
T ss_pred CCHHHHHHHHHHHHHH---HHCCCEEEEC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC-EEEECC
T ss_conf 8899999999998456---5089867506-9999998979889999999999998898996299-999856
No 12
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=96.85 E-value=0.00084 Score=43.93 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=36.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 887899998589878999999999887916731783368
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
.+..++|+.+|||+.||.++++.|.++|||...|.+|..
T Consensus 22 v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~Y~~i~ 60 (61)
T d2ev0a1 22 ARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLV 60 (61)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----CCE
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEE
T ss_conf 509999999589951599999999888997770677756
No 13
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=96.78 E-value=0.0077 Score=37.62 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHH
Q ss_conf 8817887899998589878999999999887916731783----3686288078
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKAL 83 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~ 83 (125)
|..+ +..+||+.+|+|+++|..+++.|++.|+|.+.+.. .+|+......
T Consensus 39 ~~pl-t~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t~~g 91 (151)
T d1ku9a_ 39 DKPL-TISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFS 91 (151)
T ss_dssp SSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHH
T ss_pred CCCC-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCHHH
T ss_conf 9892-8999999867770249999999998899799874788744677678888
No 14
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=96.71 E-value=0.0049 Score=38.88 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHH-CCCCCCCCC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 89999999999976-498998881--7-887899998589878999999999887916731783368628
Q T0586 14 IYSQISDWMKKQMI-TGEWKGEDK--L-PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 14 ly~qI~~~l~~~I~-~G~l~~G~~--L-Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
+-++|+..|..... .|.-..|.. + .|-.+||...|+||.||.++++.|+++|+|.... +...|.+
T Consensus 2 v~~Rla~~Ll~l~~~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~-~~i~I~d 70 (81)
T d2gaua1 2 VRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDG-KRIKIID 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET-TEEEESC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEECC
T ss_conf 88999999999999839988997786068999999997998999999999999899789639-9999838
No 15
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=96.71 E-value=0.0076 Score=37.63 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=43.7
Q ss_pred HHHHHHHHHHH-CCC-CCCCC-----CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHH
Q ss_conf 99999999976-498-99888-----178878999985898-78999999999887916731783368628807899
Q T0586 17 QISDWMKKQMI-TGE-WKGED-----KLPSVREMGVKLAVN-PNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFD 85 (125)
Q Consensus 17 qI~~~l~~~I~-~G~-l~~G~-----~LPser~La~~~~VS-r~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~ 85 (125)
.|+..|..... .|. -+.|. +| |..+||...|+| |.||.++++.|+++|+|.... +..+|.+ ...+.
T Consensus 5 ~va~~Ll~La~~~G~~~~~g~~i~~~~l-TqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~~-~~i~I~D-~~~L~ 78 (100)
T d2bgca1 5 SICSQLLILTYVYGKETPDGIKITLDNL-TMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-SCFYVQN-LDYLK 78 (100)
T ss_dssp HHHHHHHHHHHHHEEEETTEEEECCSCC-CHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-TEEEESC-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECC-CEEEEEC-HHHHH
T ss_conf 9999999999983998999738705666-9999998838744889999999998797889759-9999928-99999
No 16
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.63 E-value=0.006 Score=38.33 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHH-CCCCCCCC----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 9999999999976-49899888----1788789999858987899999999988791673178
Q T0586 15 YSQISDWMKKQMI-TGEWKGED----KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
Q Consensus 15 y~qI~~~l~~~I~-~G~l~~G~----~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125)
..+|+..|...-. .|.-..|. .+ |..+||..+|+||.||.++++.|+++|+|....+
T Consensus 3 ~~Rla~~Ll~l~~~~g~~~~~~~i~l~l-t~~~lA~~~G~sRetvsr~L~~l~~~glI~~~~~ 64 (69)
T d1i5za1 3 TGRIAQTLLNLAKQPDAMTHPDGMQIKI-TRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 64 (69)
T ss_dssp HHHHHHHHHHGGGSTTCCCCSSSCEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 8999999999999809988897456178-9999998979979999999999998898897699
No 17
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.56 E-value=0.021 Score=34.69 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 1788789999858987899999999988791673178----336862880789999999999999999999998199998
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125)
.+ +..+||+.+++++++|.+.++.|++.|||++.+. +-.+|.-.+.... ... ........+... ..-+++++
T Consensus 50 ~~-t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~-~~~-~~~~~~~~~~~~-~~~~ls~~ 125 (141)
T d1lnwa_ 50 GL-NLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLA-IHQ-HAEAIMSRVHDE-LFAPLTPV 125 (141)
T ss_dssp TC-BHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHH-HHH-HHHHHHHHHHHH-HHTTSCHH
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHCCCHHHHH-HHH-HHHHHHHHHHHH-HHHCCCHH
T ss_conf 98-999999997845737999999999832301103478876111206898999-999-999999999999-98379999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0586 112 TAIELL 117 (125)
Q Consensus 112 ~~~~l~ 117 (125)
+...++
T Consensus 126 e~~~l~ 131 (141)
T d1lnwa_ 126 EQATLV 131 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 18
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=96.49 E-value=0.003 Score=40.32 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=40.8
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEEC
Q ss_conf 98881788789999858987899999999988791673178336862
Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125)
Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125)
.+|+.+ |..++|+.+++|+..+++.++.|...|+|.+.+|+|-|.-
T Consensus 19 ~~~~~v-ss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~~L 64 (138)
T d1ylfa1 19 NPSSLC-TSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGL 64 (138)
T ss_dssp SCGGGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEE
T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEE
T ss_conf 899868-4999999979699999999999988898685349998331
No 19
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=96.47 E-value=0.013 Score=36.06 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98881788789999858987899999999988791673178----33686288078999999999999999999999819
Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIG 107 (125)
Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (125)
.+|..+ |.++||+.++++++||.++++.|+..|||.+.+. ++..|.-.+.... .... .......+... ...+
T Consensus 41 ~~~~~i-t~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~-~~~~-~~~~~~~~~~~-~~~~ 116 (135)
T d3broa1 41 NKNKEV-LQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK-LETI-ILSYMDSDQSQ-MTSG 116 (135)
T ss_dssp TTTSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT-THHH-HHHHHHHHHHH-HTTT
T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHH-HHHHHHHHHHH-HHHC
T ss_conf 079999-999999998968868999999998888888886100256665204577999-9999-99999999999-9868
Q ss_pred CCHHHHHHH
Q ss_conf 999899999
Q T0586 108 LDDQTAIEL 116 (125)
Q Consensus 108 ~~~~~~~~l 116 (125)
++.++...+
T Consensus 117 l~~ee~~~~ 125 (135)
T d3broa1 117 LNKEEVVFL 125 (135)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
T ss_conf 999999999
No 20
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=96.42 E-value=0.006 Score=38.33 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHC-CCCCCC-CCC---CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHH
Q ss_conf 9999999999764-989988-817---887899998589878999999999887916731783368628807
Q T0586 16 SQISDWMKKQMIT-GEWKGE-DKL---PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKA 82 (125)
Q Consensus 16 ~qI~~~l~~~I~~-G~l~~G-~~L---Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~ 82 (125)
++|+..|...... |.-.++ ..+ +|..+||..+|+||.||.++++.|+.+|+|.... +|.++-.+..
T Consensus 4 ~Rla~~Ll~l~~~~g~~~~~~~~i~~~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~-~~~i~I~d~~ 74 (80)
T d1ft9a1 4 QRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQG-RGHYTIPNLV 74 (80)
T ss_dssp HHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECS-TTCEECSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCEEEECCHH
T ss_conf 9999999999998599889971785378999999997988999999999999889889789-9959988999
No 21
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.33 E-value=0.019 Score=34.99 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHH
Q ss_conf 88999999999997649899888178878999985898789999999998879167317----83368628807
Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKA 82 (125)
Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~ 82 (125)
|.-.+|+..|... | .+ |..++|+.+|++++||..++..|++.|||.+.+ ++.+.+....+
T Consensus 20 ~~e~~v~~~L~~~--------g-~~-t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~a~~~ 83 (109)
T d1sfxa_ 20 PSDVRIYSLLLER--------G-GM-RVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKP 83 (109)
T ss_dssp HHHHHHHHHHHHH--------C-CB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCH
T ss_pred HHHHHHHHHHHHC--------C-CC-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCH
T ss_conf 9999999998823--------8-99-899999985798355999999999599879885057885022258887
No 22
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=96.26 E-value=0.0078 Score=37.57 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 8817887899998589878999999999887916731783
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
+..+ +..+||+.+|+|++||.+.++.|++.|||.+.+..
T Consensus 34 ~~~~-t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~ 72 (109)
T d2d1ha1 34 EKPI-TSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp CSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9898-89999999885676999999999978997985268
No 23
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=96.24 E-value=0.018 Score=35.21 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=47.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 887899998589878999999999887916731783----3686288078999999999999999999999819999899
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125)
++..+||+.++++++||.+.++.|++.|||++.+.. -.+|.-.+...... .-...........+ ..+++.+++
T Consensus 50 ~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~--~~~~~~~~~~~~~~-~~~l~~~e~ 126 (143)
T d1s3ja_ 50 LKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF--EEVLAGRKAIMARY-LSFLTEEEM 126 (143)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH--HHHHHHHHHHHHHH-HTTSCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEECHHHHHHH--HHHHHHHHHHHHHH-HHCCCHHHH
T ss_conf 899999999896988999999999973400131013788713778898899999--99999999999999-858999999
Q ss_pred HHH
Q ss_conf 999
Q T0586 114 IEL 116 (125)
Q Consensus 114 ~~l 116 (125)
..+
T Consensus 127 ~~l 129 (143)
T d1s3ja_ 127 LQA 129 (143)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 24
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.20 E-value=0.057 Score=31.88 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=47.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 887899998589878999999999887916731783----3686--2880789999999999999999999998199998
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFV--TSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125)
++..+||+.++++++||.+.+..|+..|||.+.+.. ...| ++........... ........+ .-+++++
T Consensus 44 ~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~~~----~~~~~~~~~-~~~l~~~ 118 (137)
T d2fbha1 44 PTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEA----IAASVRNDV-LTGIDES 118 (137)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHH----HHHHHHHHH-TTTCCHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH----HHHHHHHHH-HHCCCHH
T ss_conf 76999999989789899999999998577200577788881112068989999999999----999999999-8689999
Q ss_pred HHHHH
Q ss_conf 99999
Q T0586 112 TAIEL 116 (125)
Q Consensus 112 ~~~~l 116 (125)
+...+
T Consensus 119 e~~~l 123 (137)
T d2fbha1 119 EQALC 123 (137)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 25
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=96.19 E-value=0.036 Score=33.21 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC------EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 817887899998589878999999999887916731783------36862880789999999999999999999998199
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM------GSFVTSDKALFDQLKKELADAITERFLEEAKSIGL 108 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (125)
..+ +..+||+.+++++++|.+.++.|+..|||++.+.. -.++++............. ...... ..-++
T Consensus 45 ~~~-t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~~~~~~~----~~~~~~-~~~~l 118 (140)
T d3deua1 45 PDQ-SQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVI----HKTRGE-ILAGI 118 (140)
T ss_dssp SSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHHHH----HHHHHH-HHTTC
T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHH----HHHHHH-HHHCC
T ss_conf 995-699999997877767889999997089777516678988105688988999999999999----999999-99489
Q ss_pred CHHHHHHH
Q ss_conf 99899999
Q T0586 109 DDQTAIEL 116 (125)
Q Consensus 109 ~~~~~~~l 116 (125)
++++...+
T Consensus 119 ~~ee~~~~ 126 (140)
T d3deua1 119 SSEEIELL 126 (140)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
T ss_conf 99999999
No 26
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=96.13 E-value=0.0021 Score=41.30 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCEEEECCCCEEEEC
Q ss_conf 89999999999976498998881788789999858--987899999999988791673178336862
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA--VNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~--VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~ 78 (125)
-..+|...|.+..... |... +-++|++.+| +|.+|||.-+..|++.|+|..-+-++-+|-
T Consensus 5 Rq~~IL~~Ive~y~~~----g~Pv-~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~s~GriP 66 (87)
T d1stza1 5 RQRKVLYCIVREYIEN----KKPV-SSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGRIP 66 (87)
T ss_dssp HHHHHHHHHHHHHHHH----CSCB-CHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCBEE
T ss_pred HHHHHHHHHHHHHHHC----CCCC-CHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999999999980----9846-799999870889898999999999998786248887787760
No 27
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=96.06 E-value=0.066 Score=31.48 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 88789999858987899999999988791673178----33686288078999999999999999999999819999899
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125)
++..+||+.+++|++||.+.++.|++.|||++.+. +-.+|.-.+....... ............+ .-+++.+++
T Consensus 47 ~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~--~~~~~~~~~~~~~-~~~~~~~e~ 123 (140)
T d2etha1 47 KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG--EILSNFESLLKSV-LEKFSEEDF 123 (140)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH--HHHHHHHHHHHHH-HTTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCHHHHHHHH--HHHHHHHHHHHHH-HHCCCHHHH
T ss_conf 5999999998969879999999998788966631334453255403898999999--9999999999999-967999999
Q ss_pred HHH
Q ss_conf 999
Q T0586 114 IEL 116 (125)
Q Consensus 114 ~~l 116 (125)
..+
T Consensus 124 ~~~ 126 (140)
T d2etha1 124 KVV 126 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 28
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=95.97 E-value=0.018 Score=35.20 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 9999999997649899888178878999985898789999999998879167317833
Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125)
.|.+.++..+. .|++|+.. +-..||+.+|+++..|.++|-.|+..|.|...++..
T Consensus 7 ~i~~lvk~~l~--~L~~~~~~-tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~tP 61 (70)
T d1sfua_ 7 EIFSLVKKEVL--SLNTNDYT-TAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNP 61 (70)
T ss_dssp HHHHHHHHHHH--TSCTTCEE-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred HHHHHHHHHHH--HCCCCCCC-HHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 99999999997--45877770-499999995988989889999999879851279969
No 29
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=95.93 E-value=0.032 Score=33.52 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 178878999985898789999999998879167317833
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125)
.+ +..+||+.++++++||.+.++.|+..|||++.++..
T Consensus 49 ~~-t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~~ 86 (145)
T d2hr3a1 49 DV-TPSELAAAERMRSSNLAALLRELERGGLIVRHADPQ 86 (145)
T ss_dssp CB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 97-999999997989889999999998769867632754
No 30
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=95.82 E-value=0.0065 Score=38.09 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHH-CCCC-CCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 9999999999976-4989-9888178---87899998589878999999999887916731783368628
Q T0586 15 YSQISDWMKKQMI-TGEW-KGEDKLP---SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 15 y~qI~~~l~~~I~-~G~l-~~G~~LP---ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
..+|+..|..... .|.. ..|-.+| |..+||...|+||.||.++++.|.++|+|...+ +...|.+
T Consensus 3 ~~Rla~~L~~L~~~~g~~~~~~~~i~~~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~~-~~i~I~d 71 (80)
T d3e5ua1 3 TIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIVYN 71 (80)
T ss_dssp HHHHHHHHHHHHHHHCEEETTEEECCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----CEESC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEECC
T ss_conf 89999999999998599789972886379999999998877889999999999899699639-9999868
No 31
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=95.74 E-value=0.028 Score=33.90 Aligned_cols=63 Identities=13% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-CCEEEECCCHHH
Q ss_conf 999999997649899888178878999985898789999999998879167317-833686288078
Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR-GMGSFVTSDKAL 83 (125)
Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~-g~G~~V~~~~~~ 83 (125)
+.+..+-.|+. .+..|+ . +..+|++.+|+|++||..-++.|.+.|+|..++ |+-+|.+-.++.
T Consensus 20 L~~p~Rl~Il~-~L~~~~-~-~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~ 83 (98)
T d1r1ta_ 20 LADPNRLRLLS-LLARSE-L-CVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHH 83 (98)
T ss_dssp HCCHHHHHHHH-HHTTCC-B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HCCHHHHHHHH-HHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHH
T ss_conf 58999999999-998199-6-7999999989298899999999998892489988798999988399
No 32
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=95.72 E-value=0.031 Score=33.58 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 887899998589878999999999887916731783----3686288078999999999999999999999819999899
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTA 113 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (125)
.+..+||+.+++++++|.+.++.|+..|||++.+.. ...|.-.+...... .. ........+.+...-+++.+++
T Consensus 49 ~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~-~~-~~~~~~~~~~~~~~~~l~~~e~ 126 (138)
T d1jgsa_ 49 ITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC-EQ-CHQLVGQDLHQELTKNLTADEV 126 (138)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH-HH-HHHHHHHHHHHHHHTTTTTTCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH-HH-HHHHHHHHHHHHHHCCCCHHHH
T ss_conf 899999999787885799999987307877986316888736989898789999-99-9999999999999807999999
Q ss_pred HHH
Q ss_conf 999
Q T0586 114 IEL 116 (125)
Q Consensus 114 ~~l 116 (125)
..+
T Consensus 127 ~~l 129 (138)
T d1jgsa_ 127 ATL 129 (138)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 33
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=95.63 E-value=0.011 Score=36.67 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC-EEEECCCH
Q ss_conf 9999999764989988817887899998589878999999999887916731783-36862880
Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM-GSFVTSDK 81 (125)
Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~-G~~V~~~~ 81 (125)
+-++...+.. ++++ |-+++|+.+|+|+..|++.++.|...|+|.+.+|. |.|.+.+.
T Consensus 6 Av~~L~~la~-----~~~~-ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGyLar~p 63 (127)
T d1xd7a_ 6 AIHILSLISM-----DEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKDP 63 (127)
T ss_dssp HHHHHHHHHT-----CSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSCG
T ss_pred HHHHHHHHHC-----CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 9999999864-----9998-99999988695999999999999980765126899985106897
No 34
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=95.49 E-value=0.012 Score=36.37 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 7688898899999999999764989988817887899998589878999999999887916731783368
Q T0586 7 TFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 7 ~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
-|.+.+||...+...+.+.+..| + |.+++|..|+||++||.+-++...+.|-+.-.+..|-.
T Consensus 10 ~~~~GrpLs~dlR~rIv~~~~~G-------~-s~r~iA~~~~VS~~tV~k~l~r~~~~G~~~~~~~~~~r 71 (123)
T d1pdnc_ 10 VFINGRPLPNNIRLKIVEMAADG-------I-RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 71 (123)
T ss_dssp EEETTSCCCHHHHHHHHHHHHTT-------C-CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC-------C-CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 56498179899999999999804-------8-99999999896999999999998715876767778999
No 35
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=95.47 E-value=0.071 Score=31.26 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECC
Q ss_conf 7887899998589878999999999887916731783----368628
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTS 79 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~ 79 (125)
+ +..+||+.++++++||.+.++.|+..|||.+.+.. -.+|.-
T Consensus 44 ~-t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~L 89 (144)
T d1lj9a_ 44 I-IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYA 89 (144)
T ss_dssp E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEE
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 8-999999987824716999999999603201057889998531256
No 36
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=95.47 E-value=0.025 Score=34.22 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHH
Q ss_conf 178878999985898789999999998879167317----83368628807
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKA 82 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~ 82 (125)
.+ +..+||+.+|++++|+.+.++.|++.|||++++ ++.+++.-.+.
T Consensus 30 ~~-~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~ 79 (100)
T d1ub9a_ 30 KA-PFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDF 79 (100)
T ss_dssp EE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH
T ss_pred CE-EHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCHH
T ss_conf 90-199999998625432309999882310368887576776534557899
No 37
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=95.31 E-value=0.045 Score=32.54 Aligned_cols=44 Identities=25% Similarity=0.349 Sum_probs=36.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHH
Q ss_conf 8789999858987899999999988791673178----3368628807
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKA 82 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~ 82 (125)
+..+||+.++++++||.+.++.|+..|||.+.+. +...|.-.+.
T Consensus 46 t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~ 93 (139)
T d2a61a1 46 RPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRK 93 (139)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEEEECHH
T ss_conf 999999983988144269999998457256632168888678898989
No 38
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=95.14 E-value=0.048 Score=32.39 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 817887899998589878999999999887916731783368628
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
..+ |..++|+.+|++++|+.+-+..|++.||++..+ .|.|.-.
T Consensus 19 ~~~-s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~-~g~y~lG 61 (75)
T d1mkma1 19 GDV-SVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK-DKRYVPG 61 (75)
T ss_dssp SCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT-TSCEEEC
T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCCEEEC
T ss_conf 998-999999997919999999999999889988899-9978632
No 39
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=95.13 E-value=0.018 Score=35.11 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCCCC--C---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 9999999999976498998--8---817887899998589878999999999887916731783368628
Q T0586 15 YSQISDWMKKQMITGEWKG--E---DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~--G---~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
-++|+..|...-....-.. | -++ |-.+||+.+|+||.||.+.++.|.++|+|...+ +...|.+
T Consensus 3 ~~Rla~~Ll~l~~~~~~~~~~g~i~i~l-t~~elA~~lg~sr~tv~r~L~~l~~~gli~~~~-~~i~I~d 70 (82)
T d2zcwa1 3 KNRMAAALLELSETPLAHEEEGKVVLKA-THDELAAAVGSVRETVTKVIGELAREGYIRSGY-GKIQLLD 70 (82)
T ss_dssp HHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEECC
T ss_conf 8999999999888728878898476058-999999998988999999999999899889649-9999848
No 40
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=95.11 E-value=0.056 Score=31.92 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCH
Q ss_conf 7887899998589878999999999887916731783----36862880
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDK 81 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~ 81 (125)
+ +..+||+.+++++++|.++++.|++.|||++.+.. ...|.-.+
T Consensus 45 ~-t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~ 92 (136)
T d2fbia1 45 M-ESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTE 92 (136)
T ss_dssp E-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCH
T ss_conf 8-99999999887898899999999988997984557657503330589
No 41
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=95.07 E-value=0.07 Score=31.30 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 1788789999858987899999999988791673178----336862880789999999999999999999998199998
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQ 111 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (125)
.+ +..+||+.++++++|+.+.++.|++.|||.+.+. +..+|.-.+..... .... ......+.. ..+++.+
T Consensus 48 ~~-t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~-~~~~-~~~~~~~~~---~~~l~~~ 121 (136)
T d2bv6a1 48 PV-NVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETI-RPEL-SNASDKVAS---ASSLSQD 121 (136)
T ss_dssp EE-EHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHH-HHHH-TTHHHHHHH---HTTCCHH
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCHHHHHH-HHHH-HHHHHHHHH---HCCCCHH
T ss_conf 97-9999999979788379999999997898797434776640321148989999-9999-999999998---8098999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0586 112 TAIELL 117 (125)
Q Consensus 112 ~~~~l~ 117 (125)
++..+.
T Consensus 122 e~~~l~ 127 (136)
T d2bv6a1 122 EVKELN 127 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 42
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.82 E-value=0.097 Score=30.36 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=39.7
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCEEEECCCCEEEE
Q ss_conf 997649899888178878999985----898789999999998879167317833686
Q T0586 24 KQMITGEWKGEDKLPSVREMGVKL----AVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
Q Consensus 24 ~~I~~G~l~~G~~LPser~La~~~----~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
..|+.=.|..|+.+ +.+++.+.+ +.+++||+-.+.+|.+.|+|.+......|+
T Consensus 10 ~~IM~~lW~~g~~~-t~~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~~~gr~~~ 66 (122)
T d2g9wa1 10 RAVMDHLWSRTEPQ-TVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHR 66 (122)
T ss_dssp HHHHHHHHTCSSCE-EHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCE
T ss_pred HHHHHHHHCCCCCC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEE
T ss_conf 99999998489995-6999999871247995878999999999789877860698079
No 43
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=94.76 E-value=0.099 Score=30.32 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCEEEECCCCEEEEC----CCHHHHHHHHHHHHH----HHHHHHHHH-
Q ss_conf 178878999985----8987899999999988791673178336862----880789999999999----999999999-
Q T0586 36 KLPSVREMGVKL----AVNPNTVSRAYQELERAGYIYAKRGMGSFVT----SDKALFDQLKKELAD----AITERFLEE- 102 (125)
Q Consensus 36 ~LPser~La~~~----~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~----~~~~~~~~~~~~~~~----~~~~~~~~~- 102 (125)
.+ +.+++++.+ +.+.+||...+.+|++.|+|.+.+....|+- ..+.........+.. .....++..
T Consensus 21 ~~-t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (120)
T d1okra_ 21 YA-SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNF 99 (120)
T ss_dssp SE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 97-89999999752128648769999999997898588734882688636889999999998899999815699999999
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 9981999989999999
Q T0586 103 AKSIGLDDQTAIELLI 118 (125)
Q Consensus 103 ~~~~~~~~~~~~~l~~ 118 (125)
....+++.+++-+|..
T Consensus 100 ~~~~~ls~~el~~L~~ 115 (120)
T d1okra_ 100 VEKEDLSQDEIEELRN 115 (120)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHH
T ss_conf 9816989999999999
No 44
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.75 E-value=0.033 Score=33.45 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 988999999999997649899888178878999985-89878999999999887916731783368
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
.|...||++.|+.. +..+=+ +..+|+..| |++...|++|+..|..+|+|++.--.-.|
T Consensus 5 s~~q~~V~~~i~s~------~~~eGi-~~~el~~~l~~~~~~~i~~aid~L~~eG~IYsTiDddHf 63 (69)
T d1dpua_ 5 TVAQNQVLNLIKAC------PRPEGL-NFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHF 63 (69)
T ss_dssp CHHHHHHHHHHHHC------CCTTTE-EHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEECSSTTEE
T ss_pred CHHHHHHHHHHHHC------CCCCCC-CHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCCHH
T ss_conf 89999999999838------885683-899999881699999999999999837855510365411
No 45
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=94.67 E-value=0.023 Score=34.47 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 817887899998589878999999999887916731
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
..+ |..+||+.+|+|++||...+..|.++|+|...
T Consensus 19 g~~-sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 19 GPI-SRIDLSKESELAPASITKITRELIDAHLIHET 53 (71)
T ss_dssp CSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 994-89999999887887899999999988987971
No 46
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=94.57 E-value=0.07 Score=31.30 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 817887899998589878999999999887916731783
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
+.+ +..+||+.++++++||.+.++.|+..|||++.+..
T Consensus 78 ~~l-t~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~~ 115 (172)
T d2fbka1 78 EGL-RPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 115 (172)
T ss_dssp SCB-CHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC--
T ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 996-89999999786785799999999868984441355
No 47
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=94.55 E-value=0.037 Score=33.10 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC----CCEEEECCCHHH
Q ss_conf 888178878999985898789999999998879167317----833686288078
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR----GMGSFVTSDKAL 83 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~----g~G~~V~~~~~~ 83 (125)
++..+ +..+||+.++++++||.++++.|+..|||.+.+ ++.++|.-.+..
T Consensus 47 ~~~~~-t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G 100 (125)
T d1p4xa1 47 QENTL-PFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQ 100 (125)
T ss_dssp SCSEE-EHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHH
T ss_pred CCCCC-CHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECHHH
T ss_conf 36986-7999999968882439999999998898102123589873798889999
No 48
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=94.54 E-value=0.019 Score=35.06 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 99999997649899888178878999985898789999999998879167317
Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125)
.+..+..|+. .+..|+ + +..+||+.+|+|++||++-++.|++.|+|+...
T Consensus 13 ~~~~R~~Il~-~L~~~~-~-~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~ 62 (194)
T d2p4wa1 13 GNETRRRILF-LLTKRP-Y-FVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (194)
T ss_dssp HSHHHHHHHH-HHHHSC-E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHH-HHHHCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999-998089-8-799999998909989999999999889707997
No 49
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=94.50 E-value=0.088 Score=30.65 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 9999999999764989988817887899998589878999999999887916731783368
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
+++...|......|.+. =|..+++|+.+|++-..++..++.|..+|.+......=+|
T Consensus 6 ~~l~~~I~~~~~~~g~~----PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~~d~yf 62 (64)
T d1lvaa3 6 KKLLKDLEDKYRVSRWQ----PPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 62 (64)
T ss_dssp HHHHHHHHHHHHHHTTS----CCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred HHHHHHHHHHHHHCCCC----CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99999999999986999----9959999989199999999999999978977985365401
No 50
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=94.47 E-value=0.017 Score=35.31 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 881788789999858987899999999988791673
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125)
+.++ |.++||+.+|+|++||.+-++.|+++|+|..
T Consensus 17 n~r~-s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 17 DSRL-SMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp CSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 3999-9999999989687899999999998898565
No 51
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=94.15 E-value=0.018 Score=35.11 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHH
Q ss_conf 988817887899998589878999999999887916731783----368628807
Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKA 82 (125)
Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~ 82 (125)
.+|..+ +..+||+.++++++||.++++.|++.|||.+.+.. ..+|.-.+.
T Consensus 45 ~~~~~~-t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~ 98 (115)
T d2frha1 45 NKEKEY-YLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQ 98 (115)
T ss_dssp TCCSEE-EHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSH
T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEECHH
T ss_conf 899998-899999997978868999999998466513210136786479898988
No 52
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=93.96 E-value=0.019 Score=35.05 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 8881788789999858987899999999988791673
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125)
.+.++ |..+||+.+|+|.+||+.-++.|++.|+|..
T Consensus 16 ~~~r~-s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 16 GNART-AYAELAKQFGVSPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 83899-9999999989399999999999998898576
No 53
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=93.67 E-value=0.031 Score=33.66 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC----EEEECCCHHH
Q ss_conf 88817887899998589878999999999887916731783----3686288078
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM----GSFVTSDKAL 83 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~----G~~V~~~~~~ 83 (125)
++..+ +..+||+.++++++|+.+.+..|++.|||.+.+.. ..+|.-.+..
T Consensus 46 ~~~~~-~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G 99 (125)
T d1p4xa2 46 NKNIV-LLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQ 99 (125)
T ss_dssp TTCCE-EHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHH
T ss_pred CCCCC-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHH
T ss_conf 37883-6999999978984249999999980057765421788875788789999
No 54
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=93.44 E-value=0.035 Score=33.28 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 178878999985898789999999998879167317833
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125)
.+ +..+||+.++++++||.++++.|+..|||.+.+...
T Consensus 47 ~~-t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~~~~~ 84 (137)
T d1z91a1 47 TL-TVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEE 84 (137)
T ss_dssp EE-EHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSS
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99-899999997968888979999996500547721689
No 55
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=93.36 E-value=0.059 Score=31.77 Aligned_cols=50 Identities=14% Similarity=0.380 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 99999999764989988817887899998589878999999999887916731
Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
+.+-.+..|+. -|..|. + |..+||+.+|+|++||..-++.|+..|+|...
T Consensus 16 l~~p~R~~Il~-~L~~~~-~-s~~ela~~lg~s~~~v~~hl~~L~~~glv~~~ 65 (190)
T d1ulya_ 16 MLEDTRRKILK-LLRNKE-M-TISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 65 (190)
T ss_dssp HHSHHHHHHHH-HHTTCC-B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCHHHHHHHH-HHHHCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 39999999999-998199-8-79999999891999999999999988983899
No 56
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=93.21 E-value=0.041 Score=32.82 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE
Q ss_conf 99999999997649899888178878999985898789999999998879167317833686
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
.-+.+..+-.|+.--+..|+ + +..+|++.+|+|.+||..-++.|...|+|..++ .|.++
T Consensus 26 kaLadp~Rl~Il~~L~~~~~-~-~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r-~G~~~ 84 (108)
T d1u2wa1 26 KAIADENRAKITYALCQDEE-L-CVCDIANILGVTIANASHHLRTLYKQGVVNFRK-EGKLA 84 (108)
T ss_dssp HHHHSHHHHHHHHHHHHSSC-E-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CC
T ss_pred HHHCCHHHHHHHHHHHHCCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE-ECCEE
T ss_conf 99489999999999986899-1-499999888557257999999999889458998-88889
No 57
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=93.08 E-value=0.055 Score=32.00 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 17887899998589878999999999887916731783
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
.+ |..+||+.++++++||.++++.|++.|||.+.+..
T Consensus 55 ~~-t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~ 91 (162)
T d2fxaa1 55 GA-SISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 91 (162)
T ss_dssp SE-EHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred CC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf 91-89999999769940319989999977772342056
No 58
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=92.97 E-value=0.025 Score=34.22 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 881788789999858987899999999988791673
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125)
+.++ |.++||+.+|+|+.||..-++.|+++|+|..
T Consensus 15 n~r~-s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 15 DART-PFTEIAKKLGISETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp CTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 4999-9999999989299999999999998897576
No 59
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=92.87 E-value=0.035 Score=33.30 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEECCCHH
Q ss_conf 8881788789999858987899999999988791673178----3368628807
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFVTSDKA 82 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V~~~~~ 82 (125)
++..+ +..+||+.++++++||.++++.|++.|||.+.+. +..+|.-.+.
T Consensus 45 ~~~~~-t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~ 97 (115)
T d1hsja1 45 ESNEI-SSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDT 97 (115)
T ss_dssp SCSEE-EHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSS
T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHH
T ss_conf 89994-899999997888535999999999868769876047784589899989
No 60
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=92.83 E-value=0.34 Score=26.76 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=33.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 87899998589878999999999887916731783368
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
++.+|++.+|+|.+||.+-++.|.+.|+|..++ .|.+
T Consensus 33 ~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r-~G~~ 69 (94)
T d1r1ua_ 33 SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR-QGQS 69 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-ETTE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE-ECCE
T ss_conf 699999998878778999999999889537998-8789
No 61
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.49 E-value=0.15 Score=29.10 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEE
Q ss_conf 77688898899999999999764989988817887899998589878999999999887916
Q T0586 6 PTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYI 67 (125)
Q Consensus 6 ~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i 67 (125)
=.|.+.+|+...+...+.+.+..| + |.++.|+.|+||++||.+-+++-.+.|-|
T Consensus 7 g~~~~GrPls~DLR~Riv~~~~~G-------~-s~r~aA~rf~VS~s~v~k~l~r~reTG~i 60 (63)
T d1k78a1 7 GVFVNGRPLPDVVRQRIVELAHQG-------V-RPCDISRQLRVSHGCVSKILGRYYETGSI 60 (63)
T ss_dssp CBCCTTSCCCHHHHHHHHHHHHTT-------C-CHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCC-------C-CHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 624499859999999999999959-------9-89999999597799999999999972688
No 62
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=92.43 E-value=0.45 Score=25.96 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC----CHHHHHHHHHHH
Q ss_conf 999999764989988817887899998----589878999999999887916731783368628----807899999999
Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVK----LAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS----DKALFDQLKKEL 91 (125)
Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~----~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~----~~~~~~~~~~~~ 91 (125)
..+...|+. .| .+ +.+++.+. .+.+.+||.-.+.+|.+.|+|.+....++|+-. ...........+
T Consensus 9 ~~VM~~lW~----~~-~~-t~~ei~~~l~~~~~~~~tTv~T~L~rL~~Kg~l~~~~~gr~~~Y~~~v~~~~~~~~~~~~~ 82 (122)
T d1sd4a_ 9 WDVMNIIWD----KK-SV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTF 82 (122)
T ss_dssp HHHHHHHHH----SS-SE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CC-CC-CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 999999984----79-97-7999999841458995858999999998610203533698078863688999999999999
Q ss_pred HHH----HHHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf 999----9999999999-8199998999999
Q T0586 92 ADA----ITERFLEEAK-SIGLDDQTAIELL 117 (125)
Q Consensus 92 ~~~----~~~~~~~~~~-~~~~~~~~~~~l~ 117 (125)
... ....++..+. .-.++.+++-+|-
T Consensus 83 ~~~~~~gs~~~lv~~~~~~~~ls~~el~eL~ 113 (122)
T d1sd4a_ 83 LNKLYGGDMKSLVLNFAKNEELNNKEIEELR 113 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999699999999999857899999999999
No 63
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.39 E-value=0.2 Score=28.32 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHH
Q ss_conf 8178878999985898789999999998879167317833686288078
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKAL 83 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~ 83 (125)
+.+ +-|.||+.+|+|-..||-=+..|.++|+|++.+ +|+++++.-..
T Consensus 16 qPi-GRr~La~~L~l~Er~vRte~~~Lk~~gLI~~~~-~Gm~lTe~G~~ 62 (69)
T d2p8ta1 16 EPL-GRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKE 62 (69)
T ss_dssp SCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---CEEECHHHHH
T ss_pred CCC-CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC-CCCEECHHHHH
T ss_conf 884-589999982981999999999998889866607-98778784899
No 64
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.34 E-value=0.034 Score=33.34 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.2
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 8817887899998589878999999999887916731
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
+.++ |..+||+.+|+|++||.+-++.|+++|+|...
T Consensus 15 n~r~-s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 15 DGKA-PLREISKITGLAESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp CTTC-CHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 2899-99999999893999999999999988974757
No 65
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=92.28 E-value=0.24 Score=27.83 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC--CCEEEECCCHHH
Q ss_conf 49899888178878999985898789999999998879167317--833686288078
Q T0586 28 TGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR--GMGSFVTSDKAL 83 (125)
Q Consensus 28 ~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~--g~G~~V~~~~~~ 83 (125)
..++...+-+---..+|++.|+.|+.+-.|++.|+.-|+|+++. =+|||+.--...
T Consensus 25 f~eL~g~EGllvASkiADrvgiTRSVIVNALRK~ESAGvIEsrSlGMKGTyikvln~~ 82 (91)
T d2b0la1 25 FEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNK 82 (91)
T ss_dssp TTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHH
T ss_pred HHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECHH
T ss_conf 9973897654741555465185399999999876434604411477770565210478
No 66
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=92.12 E-value=0.09 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 7887899998589878999999999887916731
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
+ |..+||+..|+|++||...+..|.++|+|...
T Consensus 13 i-sr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 13 V-SRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp B-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 6-99999999893999999999999988987877
No 67
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=91.78 E-value=0.22 Score=27.97 Aligned_cols=63 Identities=19% Similarity=0.442 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCEEEECCCCEEEECCC
Q ss_conf 9999999999976498998881788789999858--------------98789999999998879167317833686288
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA--------------VNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~--------------VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
|.+-+.-++.-=+.| .+ ++..|+..|| -|.+.+|.++++|+..|+|+..++.|-.+++.
T Consensus 51 y~RaASilRkiY~~g------pv-Gv~~Lr~~YGg~k~rG~~P~h~~~~Sg~iiR~~LQqLE~~glVek~~~~GR~lT~~ 123 (149)
T d2v7fa1 51 YYRVASILRRVYLDG------PV-GIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPK 123 (149)
T ss_dssp HHHHHHHHHHHHHHC------SB-CHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred HHHHHHHHHHHHHCC------CC-CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEECHH
T ss_conf 999999999998708------96-38899999788988999998767776389999999998688866769999477888
Q ss_pred HHHH
Q ss_conf 0789
Q T0586 81 KALF 84 (125)
Q Consensus 81 ~~~~ 84 (125)
-...
T Consensus 124 G~~~ 127 (149)
T d2v7fa1 124 GRSF 127 (149)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 68
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.73 E-value=0.094 Score=30.47 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 8817887899998589878999999999887916731
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
.-.+ |-.+||+.+|+|+.||.+.+..|.++|+|...
T Consensus 17 ~g~~-sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 17 LGPV-SRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp SCSC-CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 4992-89999999894999999999999988997860
No 69
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=89.49 E-value=0.17 Score=28.74 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC----CEEEE
Q ss_conf 881788789999858987899999999988791673178----33686
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG----MGSFV 77 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g----~G~~V 77 (125)
|.-+ |.-++|+..|+..++||++|..|-+.|++.-++. +|+|+
T Consensus 31 ~~ev-tDe~iA~~tgi~in~VRk~Ly~L~~~~L~~y~R~kd~~~gw~~ 77 (88)
T d1q1ha_ 31 GTEM-TDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFI 77 (88)
T ss_dssp CSCB-CHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCE
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEE
T ss_conf 6767-8999999969969999999999986896688873448888389
No 70
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=87.81 E-value=0.4 Score=26.35 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHH----HHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE
Q ss_conf 99999976498998881788789----99985898789999999998879167317833686
Q T0586 20 DWMKKQMITGEWKGEDKLPSVRE----MGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~----La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
..+.+.|+. .| .+ +.++ |.+..+.+.+||+--+.+|.+.|+|..+.....|+
T Consensus 12 ~~IM~~lW~----~~-~~-t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l~~~k~gr~~~ 67 (82)
T d1p6ra_ 12 LEVMKVIWK----HS-SI-NTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFV 67 (82)
T ss_dssp HHHHHHHHT----SS-SE-EHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHH----CC-CC-CHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEE
T ss_conf 999999995----79-97-8999999850236972847999999999889867870598589
No 71
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=86.51 E-value=1.1 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=39.5
Q ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE------EEECCCHHHHHHHHHH
Q ss_conf 878999985-898789999999998879167317833------6862880789999999
Q T0586 39 SVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG------SFVTSDKALFDQLKKE 90 (125)
Q Consensus 39 ser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G------~~V~~~~~~~~~~~~~ 90 (125)
.-.+|...+ |||+.+..+-++.|++.|+|++..-.+ |.+++....+.+....
T Consensus 26 rF~el~~~l~gis~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~~ 84 (95)
T d2hzta1 26 RTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDM 84 (95)
T ss_dssp CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 79999977326776589999999999687730001245530132444628899999999
No 72
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=85.72 E-value=0.5 Score=25.69 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 98899999999999764989988817887899998589878999999999887916731783368628
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
.|+|.++-..+.+ .| -+.+ |-.+||+.+||+.++||+=+..+-..| ++|.|+-|..
T Consensus 8 Lp~Ylr~L~~l~~---~g----~~~v-SS~~La~~~gi~~~qVRKDls~fG~~G----~~g~GY~V~~ 63 (74)
T d2dt5a1 8 LITYLRILEELEA---QG----VHRT-SSEQLGGLAQVTAFQVRKDLSYFGSYG----TRGVGYTVPV 63 (74)
T ss_dssp HHHHHHHHHHHHH---TT----CCEE-CHHHHHHHHTSCHHHHHHHHHHTTCCC----CTTTCEEHHH
T ss_pred HHHHHHHHHHHHH---CC----CEEE-CHHHHHHHHCCCHHHHHHHHHHHCCCC----CCCCCCCHHH
T ss_conf 9999999999998---79----9159-699999997969999998799865789----9999901999
No 73
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=85.47 E-value=1.3 Score=23.04 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHH------CCEEEECCCCEEEECCCHH
Q ss_conf 999976498998881788789999858--987899999999988------7916731783368628807
Q T0586 22 MKKQMITGEWKGEDKLPSVREMGVKLA--VNPNTVSRAYQELER------AGYIYAKRGMGSFVTSDKA 82 (125)
Q Consensus 22 l~~~I~~G~l~~G~~LPser~La~~~~--VSr~TVr~Al~~L~~------~G~i~~~~g~G~~V~~~~~ 82 (125)
+...|.+=-|-.|+.| |..+|++.++ +|...+++++..|.. .|+-...-+.|+.....+.
T Consensus 8 l~~~IEAlLFas~~Pl-s~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~gy~~~tk~e 75 (85)
T d1t6sa1 8 LLRSLEALIFSSEEPV-NLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPE 75 (85)
T ss_dssp HHHHHHHHHHHCSSCB-CHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGG
T ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHHH
T ss_conf 9999999999548998-9999999875589999999999999999850798679999999989988299
No 74
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.42 E-value=0.45 Score=26.01 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8881788789999858987899999999
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~ 60 (125)
.|.++ +..++|..|||+++||+..++.
T Consensus 22 ~g~k~-sq~eIA~~fGv~~STvs~IlKn 48 (66)
T d1hlva1 22 ENPDL-RKGEIARRFNIPPSTLSTILKN 48 (66)
T ss_dssp HCTTS-CHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCC-HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 08721-0999999959976479999987
No 75
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=85.22 E-value=1.4 Score=22.70 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=48.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 88898899999999999764989988817887899998589878999999999887916731783368
Q T0586 9 HADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 9 ~~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
++.-|+|.+....+... .+. |..-|...|+|..+-+-+.+.+|++.|+|.-..+.|..
T Consensus 3 ~~~D~ly~~a~~~V~~~---------~ka-S~S~lQR~l~IGYnRAariid~LE~~GiVsp~~~~~~R 60 (69)
T d2j5pa1 3 EELDPLFDQAVQFVTEK---------RKA-SISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNR 60 (69)
T ss_dssp TTSCTTHHHHHHHHHHT---------TEE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSBCCCCSSSEE
T ss_pred CCCCHHHHHHHHHHHHH---------CCC-CHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 64228999999999980---------864-48999999712522999999999988768877799799
No 76
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=84.25 E-value=1.6 Score=22.32 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 898899999999999764989988817887899998589878999999999887916731783368
Q T0586 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 11 ~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
.-|+|.+..+.+... + +- |..-|...|+|..+-+.+-+..|++.|+|.-..|.|..
T Consensus 2 ~D~ly~~a~~~V~~~---~------ka-S~S~lQR~l~IGYnRAariid~LE~~GiVsp~~g~~~R 57 (67)
T d2ve8a1 2 DDPLYDEAVRFVTES---R------RA-SISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSR 57 (67)
T ss_dssp CCTTHHHHHHHHHHH---C------CC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTSCC
T ss_pred CCHHHHHHHHHHHHH---C------CC-CHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 607999999999980---8------63-48999999711507999999999987598887799888
No 77
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=84.20 E-value=1.1 Score=23.43 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.0
Q ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE------EEECCCHHHHHHHHH
Q ss_conf 878999985-898789999999998879167317833------686288078999999
Q T0586 39 SVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG------SFVTSDKALFDQLKK 89 (125)
Q Consensus 39 ser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G------~~V~~~~~~~~~~~~ 89 (125)
.-.+|...+ |||+.+..+-++.|++.|+|++..-.+ |..++....+.+...
T Consensus 34 RF~el~~~l~gIS~~~Ls~rLk~L~~~glv~R~~~~~~p~~veY~LT~~G~~L~pil~ 91 (108)
T d1z7ua1 34 RNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALS 91 (108)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHCHHHHHHHHHHH
T ss_conf 8999997773777668999999999789503431577765321132660778999999
No 78
>d2ra5a1 d.190.1.2 (A:66-245) Putative transcriptional regulator SCO6256 {Streptomyces coelicolor [TaxId: 1902]}
Probab=83.26 E-value=0.19 Score=28.40 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=15.6
Q ss_pred CEEEECCCCEEEECCCHH
Q ss_conf 916731783368628807
Q T0586 65 GYIYAKRGMGSFVTSDKA 82 (125)
Q Consensus 65 G~i~~~~g~G~~V~~~~~ 82 (125)
|+|.+++|+||||+....
T Consensus 1 Gli~r~~G~GtfV~~~~~ 18 (180)
T d2ra5a1 1 GLLVRRRGVGTQVVHSKV 18 (180)
T ss_dssp CEEEEEC-----------
T ss_pred CEEEEEECCCEEECCCCC
T ss_conf 999999280489998878
No 79
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=83.14 E-value=1.4 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=29.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 87899998589878999999999887916731
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
...+|.+.+|||+.++.+-++.|++.|+|+..
T Consensus 35 rf~el~~~lgis~~vLs~rL~~L~~~gLv~r~ 66 (142)
T d2f2ea1 35 RFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 66 (142)
T ss_dssp SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 79999977400388999999999971043554
No 80
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=82.95 E-value=0.37 Score=26.54 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8878999985898789999999
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~ 59 (125)
|+..++|+..|||++||.+||+
T Consensus 3 ~Ti~diA~~agvS~sTVSr~l~ 24 (59)
T d1efaa1 3 VTLYDVAEYAGVSYQTVSRVVN 24 (59)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 8899999897979999999977
No 81
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.02 E-value=1.4 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 9899888178878999985898789999999998879167317833
Q T0586 29 GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 29 G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125)
+.+.||+.. +-+.||.+|+|-..-|.+++-.|+..|.+....|+.
T Consensus 9 ~~lg~~~~~-tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~gtP 53 (59)
T d2gxba1 9 EELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 53 (59)
T ss_dssp HHHCTTCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred HHCCCCCCH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCC
T ss_conf 962885203-499999996886999999999999755265368999
No 82
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=81.53 E-value=0.45 Score=25.96 Aligned_cols=30 Identities=10% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999976498998881788789999858987899999
Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125)
+.++..+.+| . |..++|..|||||+|+-+-
T Consensus 12 ~~a~~l~~~G-----~---s~~~iA~~~gVSr~TiYry 41 (47)
T d1ijwc_ 12 EQISRLLEKG-----H---PRQQLAIIFGIGVSTLYRY 41 (47)
T ss_dssp HHHHHHHHTT-----C---CHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCC-----C---CHHHHHHHHCCCHHHHHHH
T ss_conf 9999999889-----9---7999999979699999855
No 83
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=81.19 E-value=0.68 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 878999985898789999999
Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125)
+.+++|+..|||.+||.++|.
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln 22 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVIN 22 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHC
T ss_conf 899999998959999999977
No 84
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=81.16 E-value=1.7 Score=22.25 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=46.6
Q ss_pred CCCCCCHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCCCE------EEE
Q ss_conf 688898899---9999999997649899888178878999985-898789999999998879167317833------686
Q T0586 8 FHADKPIYS---QISDWMKKQMITGEWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRGMG------SFV 77 (125)
Q Consensus 8 ~~~~~Ply~---qI~~~l~~~I~~G~l~~G~~LPser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g~G------~~V 77 (125)
|++.=|+.. .|...=.-.|+.- +..|.. .-.+|...+ |||..+..+-++.|++.|+|++..... |..
T Consensus 8 ~~~~Cpv~~~l~~ig~kW~l~Il~~-L~~g~~--RF~el~~~l~gis~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~L 84 (114)
T d1yyva1 8 FAEQCPSREVLKHVTSRWGVLILVA-LRDGTH--RFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSL 84 (114)
T ss_dssp TSTTCTHHHHHHHHHSHHHHHHHHH-GGGCCE--EHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEE
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHH-HHCCCC--CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 7689998999999959879999999-960999--9999997740335247999899999988873002578884157675
Q ss_pred CCCHHHHHHHHH
Q ss_conf 288078999999
Q T0586 78 TSDKALFDQLKK 89 (125)
Q Consensus 78 ~~~~~~~~~~~~ 89 (125)
++....+.....
T Consensus 85 T~~G~~L~~il~ 96 (114)
T d1yyva1 85 TPLGEQVSDKVA 96 (114)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 171889999999
No 85
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=81.00 E-value=1.3 Score=23.01 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 8899999999999764989988817887899998589878999999999887
Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
|.-......+++.-+..+| .|. +.++||..||+|..+|++.+......
T Consensus 46 P~~~~~~~~~Rn~~I~~ef-~G~---n~~eLA~kY~lS~~~I~~Ii~~~rk~ 93 (94)
T d1rr7a_ 46 PRGQALDSLIRDLRIWNDF-NGR---NVSELTTRYGVTFNTVYKAIRRMRRL 93 (94)
T ss_dssp CCSHHHHHHHHHHHHHHHC-CSS---CHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHHHH-CCC---CHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 0608889999999999990-899---89999999897799999999997723
No 86
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=79.82 E-value=1.6 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=30.5
Q ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 878999985-8987899999999988791673178
Q T0586 39 SVREMGVKL-AVNPNTVSRAYQELERAGYIYAKRG 72 (125)
Q Consensus 39 ser~La~~~-~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125)
.-.+|.+.+ |||+.+..+-++.|++.|+|.+..-
T Consensus 35 rF~el~~~l~gIs~~~Ls~rLkeL~~~glv~r~~~ 69 (102)
T d2fswa1 35 RYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQY 69 (102)
T ss_dssp EHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 89999765725564689999999998896043245
No 87
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=79.36 E-value=0.64 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 878999985898789999999
Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125)
+.+++|+..|||.+||.++|.
T Consensus 3 Ti~dvA~~agvS~~TVSr~Ln 23 (57)
T d2hsga1 3 TIYDVAREASVSMATVSRVVN 23 (57)
T ss_dssp CHHHHHHHTTSCHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999898959999999968
No 88
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=78.74 E-value=0.72 Score=24.65 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=19.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 878999985898789999999
Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125)
+..++|+..|||.+||.++|+
T Consensus 2 Tl~diA~~agvS~sTVSrvLn 22 (59)
T d1uxda_ 2 KLDEIARLAGVSRTTASYVIN 22 (59)
T ss_dssp CHHHHHHHHTSCTTHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHC
T ss_conf 799999997969999999984
No 89
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=78.25 E-value=1.4 Score=22.72 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 8178878999985-----898789999999998879167317833
Q T0586 35 DKLPSVREMGVKL-----AVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 35 ~~LPser~La~~~-----~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125)
.+-+|..++-+.+ .||++||=+++..|.+.|+|......+
T Consensus 30 ~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~~~~ 74 (134)
T d1mzba_ 30 QRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDG 74 (134)
T ss_dssp CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 999999999999997388844799999999997413788886068
No 90
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=77.60 E-value=1.7 Score=22.19 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 8817887899998589878999999999887
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
|... +.+++|+..|||..|++++|+.|...
T Consensus 58 ~~~~-t~~eIa~~~~vs~~tI~~~yk~l~~~ 87 (95)
T d1aisb2 58 GEKR-TQREVAEVARVTEVTVRNRYKELVEK 87 (95)
T ss_dssp TCCC-CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9996-89999999898899999999999998
No 91
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=76.84 E-value=2.9 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--CCCCEEEECCC
Q ss_conf 8789999858987899999999988791673--17833686288
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTSD 80 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~--~~g~G~~V~~~ 80 (125)
+..++|+.+|||..|+| .-+..|+|.- +...|+.+-..
T Consensus 4 tI~e~A~~~gvs~~tlR----~Ye~~GLl~p~~r~~~gyR~Y~~ 43 (109)
T d1r8da_ 4 QVKQVAEISGVSIRTLH----HYDNIELLNPSALTDAGYRLYSD 43 (109)
T ss_dssp CHHHHHHHHSCCHHHHH----HHHHTTSSCCSEECTTCCEEBCH
T ss_pred CHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 29999999896999999----99886895876557765045629
No 92
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=75.28 E-value=3.2 Score=20.38 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC---CCEEE
Q ss_conf 99999999997649899888178878999985898789999999998879167317---83368
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR---GMGSF 76 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~---g~G~~ 76 (125)
..|-.+|.+ .+.=.+|..- |...|+++-+|-.+|.|+.+.+|.+-|++.+.- |.|+-
T Consensus 7 vavL~~L~e---A~~e~~g~~W-SLaklsKra~~PMS~LRR~LTqL~~aGl~~t~~~edG~G~A 66 (81)
T d2obpa1 7 VEVLLVLRE---AGIENGATPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHA 66 (81)
T ss_dssp HHHHHHHHH---HTSSTTCCCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEE
T ss_pred HHHHHHHHH---HHCCCCCCCC-CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEE
T ss_conf 999999999---8316899976-38898866179689999999998506845566535775311
No 93
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.07 E-value=2 Score=21.80 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=26.2
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 88817887899998589878999999999887
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
.|... +.+++|+.+|||..|++++|+.|...
T Consensus 58 ~~~~~-t~~eIa~~~~vs~~tI~k~yk~l~~~ 88 (109)
T d1vola2 58 SAEKR-TQKEIGDIAGVADVTIRQSYRLIYPR 88 (109)
T ss_dssp SSSCC-CHHHHHHHHTCCHHHHHHHHHHHGGG
T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 18998-99999999898999999999999998
No 94
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=74.96 E-value=2.7 Score=20.83 Aligned_cols=50 Identities=18% Similarity=0.424 Sum_probs=39.1
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 9999764989988817887899998589878999999999887916731783368628
Q T0586 22 MKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 22 l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
|-+.|..| .. |..+||+..|+++..+.+-++.|..-|++... +.|.|...
T Consensus 26 ifd~l~~g------p~-s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~-~~~~y~lt 75 (85)
T d1tw3a1 26 LVDHILAG------AR-TVKALAARTDTRPEALLRLIRHLVAIGLLEED-APGEFVPT 75 (85)
T ss_dssp HHHHHHTT------CC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ETTEEEEC
T ss_pred CHHHHCCC------CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCCEEECC
T ss_conf 28776549------99-99999988492926999999999877975746-99938569
No 95
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=72.94 E-value=3.6 Score=20.01 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=28.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE--E-CCCCEEEECC
Q ss_conf 8878999985898789999999998879167--3-1783368628
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIY--A-KRGMGSFVTS 79 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~--~-~~g~G~~V~~ 79 (125)
.+..++|+.+|||..|+| .-+..|+|. . +...|+..-.
T Consensus 4 ytI~evA~~~gvs~~tlR----~Ye~~GLl~P~~~r~~~gyR~Y~ 44 (118)
T d1r8ea1 4 YSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYT 44 (118)
T ss_dssp EEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEE
T ss_pred CCHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 019999999896999999----99985885534536999940354
No 96
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=72.91 E-value=1.4 Score=22.81 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHH-HHH-CC--CCCCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCEEEECC---CCEE
Q ss_conf 89889999999999-976-49--89988817887899998589---8789999999998879167317---8336
Q T0586 11 DKPIYSQISDWMKK-QMI-TG--EWKGEDKLPSVREMGVKLAV---NPNTVSRAYQELERAGYIYAKR---GMGS 75 (125)
Q Consensus 11 ~~Ply~qI~~~l~~-~I~-~G--~l~~G~~LPser~La~~~~V---Sr~TVr~Al~~L~~~G~i~~~~---g~G~ 75 (125)
+.|+++++.-.-.. ... ++ .+..|+-----..+|+.+|+ |.+.+.+-++.|+..|+|.++. |+|.
T Consensus 8 ~Lp~h~klvL~ai~~~~~~~~~~~ittgevy~~Y~~lc~~~~~~pls~rr~~~~l~~Le~lGiI~~r~~~~g~G~ 82 (112)
T d1fnna1 8 GLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGV 82 (112)
T ss_dssp HSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC------
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 489989999999999985379887509999999999999819524549999999999986797443321568788
No 97
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=71.13 E-value=1.3 Score=22.89 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 9889999999999976498998881788789999858987899999999988791673
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~ 69 (125)
+|--.+|+++|.+....- ..-|.++||+..|||.+||-+-.+.|--.||-+-
T Consensus 17 s~~e~~ia~yil~~~~~~------~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~ 68 (83)
T d2o3fa1 17 PPSERKLADYILAHPHKA------IESTVNEISALANSSDAAVIRLCKSLGLKGFQDL 68 (83)
T ss_dssp CHHHHHHHHHHHHCHHHH------HTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHH
T ss_pred CHHHHHHHHHHHCCHHHH------HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 899999999998299999------8831999999979899899999999589989999
No 98
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=70.86 E-value=4 Score=19.78 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999976498998881788789999858987899999999988
Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
.+.+.+.+.|... ..+.| +..+||+.+|+|+.+..+.++.--.
T Consensus 3 ~ii~~i~~yi~~~---~~~~i-tl~~lA~~~~~S~~~l~r~Fk~~~g 45 (54)
T d1d5ya1 3 GIIRDLLIWLEGH---LDQPL-SLDNVAAKAGYSKWHLQRMFKDVTG 45 (54)
T ss_dssp HHHHHHHHHHHTT---SSSSC-CCHHHHTTTSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC---CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9999999999874---48999-9999999989299999999999999
No 99
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=68.62 E-value=4 Score=19.73 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=32.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 887899998589878999999999887916731783
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
|..+++|+.+|||---.|--+..|+.+|.|.+.|=+
T Consensus 15 ~~T~EIAea~gvsaYQARyYL~~Lekegki~RsPlR 50 (73)
T d2htja1 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLR 50 (73)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 637899999633899999999998771570148454
No 100
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=68.40 E-value=2.5 Score=21.13 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 1788789999858987899999999
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~ 60 (125)
-+ |..+.|+.+|||++||+.-+.+
T Consensus 34 ~l-s~~EIA~~lgiS~~aV~~~l~R 57 (106)
T d1xsva_ 34 DY-SLSEIADTFNVSRQAVYDNIRR 57 (106)
T ss_dssp CC-CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 87-5999999989599999999999
No 101
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=67.58 E-value=3.8 Score=19.90 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 881788789999858987899999999988
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
|... +.+++|+.+|||..|++++|+.+..
T Consensus 60 ~~~~-t~~eIa~~~~is~~ti~k~yk~i~~ 88 (98)
T d1aisb1 60 KVPR-TLDEIADIARVDKKEIGRSYRFIAR 88 (98)
T ss_dssp TCCC-CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998-8999999979889999999999999
No 102
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=66.76 E-value=2.9 Score=20.64 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHH----HHHHHHH
Q ss_conf 178878999985898789999----9999988
Q T0586 36 KLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~----Al~~L~~ 63 (125)
-+ |..++|+.+|||++||+. |.+.|.+
T Consensus 32 ~l-s~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 32 DY-SLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp CC-CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99-99999999896999999999999999999
No 103
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=66.30 E-value=5 Score=19.10 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=29.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--CCCCEEEECCC
Q ss_conf 8789999858987899999999988791673--17833686288
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTSD 80 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~--~~g~G~~V~~~ 80 (125)
.+.++|+.+|||..|+| .-+..|+|.- +...|+.+-..
T Consensus 2 ~Ige~A~~~gvs~~TlR----~Ye~~GLl~p~~r~~~gyR~Y~~ 41 (127)
T d1q06a_ 2 NISDVAKITGLTSKAIR----FYEEKGLVTPPMRSENGYRTYTQ 41 (127)
T ss_dssp CHHHHHHHHTCCHHHHH----HHHHTTCSCCCEECTTSCEECCH
T ss_pred CHHHHHHHHCCCHHHHH----HHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 78999999892999999----99992798887657767614519
No 104
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.70 E-value=5 Score=19.09 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE
Q ss_conf 9999999997649-899888178878999985898789999999998879167
Q T0586 17 QISDWMKKQMITG-EWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125)
Q Consensus 17 qI~~~l~~~I~~G-~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~ 68 (125)
+.|-.+++.|+.- ...|...| +..+....+..-...+++++.-|+.-|+|.
T Consensus 31 ~~Yl~iRN~Il~~w~~np~~~L-t~~~~~~~~~~d~~~~~ri~~FL~~~G~IN 82 (85)
T d2fq3a1 31 EVYMRYRNFMVNSYRLNPNEYF-SVTTARRNVSGDAAALFRLHKFLTKWGLIN 82 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCC-CHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHCCCEEE-EHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999984987146-299997463678999999999999829517
No 105
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=64.78 E-value=4.4 Score=19.45 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 87899998589878999999999887
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
|.+++++.+|||.+||.+.=+.|...
T Consensus 60 s~reI~~~~gvs~aTItR~s~~Lk~~ 85 (101)
T d1jhga_ 60 SQRELKNELGAGIATITRGSNSLKAA 85 (101)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 79999999698757788999998728
No 106
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=64.43 E-value=3.2 Score=20.39 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=18.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 878999985898789999999
Q T0586 39 SVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~ 59 (125)
+-.++|+++||||++|=++|+
T Consensus 20 gat~IAk~lgI~R~SVYR~L~ 40 (43)
T d1gdta1 20 GASHISKTMNIARSTVYKVIN 40 (43)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
T ss_conf 899999997987999999986
No 107
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=64.23 E-value=5.5 Score=18.85 Aligned_cols=66 Identities=9% Similarity=-0.012 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHH
Q ss_conf 999999999976498998881788789999858987899999999988791673178336862880789999999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKE 90 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~ 90 (125)
.+|...|...+.. |. +...+...-|+|.....+-+..|...|+|... +..+.+++....+......
T Consensus 5 ~eIi~DIL~~~~~-----g~---~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~~-~~~Y~iT~kG~~~L~~~~~ 70 (90)
T d1r7ja_ 5 LEIIQAILEACKS-----GS---PKTRIMYGANLSYALTGRYIKMLMDLEIIRQE-GKQYMLTKKGEELLEDIRK 70 (90)
T ss_dssp HHHHHHHHHHHTT-----CB---CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----CC---CCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEC-CCEEEECCCHHHHHHHHHH
T ss_conf 9999999999767-----99---82077897199999999999999988896636-9878988218999999999
No 108
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=64.01 E-value=2.2 Score=21.44 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=22.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 8789999858987899999999988791673178
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125)
+-.+||+.||||..||.+=. ..|+=....|
T Consensus 4 nk~~lA~iFGVS~~TI~~W~----~~G~Pv~~~G 33 (68)
T d1j9ia_ 4 NKKQLADIFGASIRTIQNWQ----EQGMPVLRGG 33 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHT----TTTCCCSSCC
T ss_pred CHHHHHHHHCCCHHHHHHHH----HCCCCEECCC
T ss_conf 89999999699889999999----8899842279
No 109
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]} SCOP: d1co0a_ d1troa_ d3wrpa_ d1rcsa_ d2oz9r1 d1p6zr_ d1trra_ d1mi7r_ d1trog_ d1troc_ d1p6zn_ d1troe_
Probab=63.94 E-value=4.7 Score=19.29 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 87899998589878999999999887
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
|.|++++.+|||-+||.+.=+.|...
T Consensus 60 syreIa~~~gvs~aTItRgs~~Lk~~ 85 (101)
T d1jhga_ 60 SQRELKNELGAGIATITRGSNSLKAA 85 (101)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 88889998578523567889987528
No 110
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.88 E-value=4.7 Score=19.27 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=33.5
Q ss_pred CHHHHHHHHCCCHHH-HHHHHHHHHHCCEEEECCCCE--EEEC
Q ss_conf 878999985898789-999999998879167317833--6862
Q T0586 39 SVREMGVKLAVNPNT-VSRAYQELERAGYIYAKRGMG--SFVT 78 (125)
Q Consensus 39 ser~La~~~~VSr~T-Vr~Al~~L~~~G~i~~~~g~G--~~V~ 78 (125)
+-..||+.+|+..++ |.+++-.|+..|.|....... ++++
T Consensus 21 ~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~~tPP~W~L~ 63 (73)
T d1xmka1 21 SALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLT 63 (73)
T ss_dssp EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEEC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEE
T ss_conf 3999999949970788759999999877801279989954532
No 111
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=63.73 E-value=3 Score=20.56 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 878999985898789999999998879
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERAG 65 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~G 65 (125)
|.+++|.+||||.+|++.=.+.....|
T Consensus 25 s~~~vA~~lGIs~~tl~~W~k~~~~~~ 51 (89)
T d2jn6a1 25 SLQQIANDLGINRVTLKNWIIKYGSNH 51 (89)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 599999997989889999999984424
No 112
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=61.51 E-value=4.5 Score=19.41 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCC--EEEECCCCEEEECCCHHHHHHH
Q ss_conf 8878999985898789999999998879--1673178336862880789999
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERAG--YIYAKRGMGSFVTSDKALFDQL 87 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~G--~i~~~~g~G~~V~~~~~~~~~~ 87 (125)
.|...=|+.+|+|+.+|.++++.|+.+= -+..+.++|...++....+...
T Consensus 16 gs~~~AA~~L~isq~avs~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~ 67 (89)
T d1ixca1 16 GNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLED 67 (89)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999999985899278899999998637960057569964753769999999
No 113
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=61.37 E-value=3.2 Score=20.36 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.7
Q ss_pred HCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 589878999999999887916731
Q T0586 47 LAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 47 ~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
.++|..++=.+++.|+++|+|...
T Consensus 38 ~~is~gslY~~L~rLe~~GlI~~~ 61 (103)
T d1xmaa_ 38 YVIKETTLYSAFARLEKNGYIKSY 61 (103)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ECCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 358977659999999988994788
No 114
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=60.79 E-value=3.2 Score=20.36 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 788789999858987899999
Q T0586 37 LPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~A 57 (125)
| |..+||+.+|||+.||.+-
T Consensus 13 l-tQ~elA~~lGvs~~tvs~~ 32 (62)
T d2ppxa1 13 L-TQEEFSARYHIPLGTLRDW 32 (62)
T ss_dssp C-CHHHHHHHHTCCHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHH
T ss_conf 9-9999999969899999988
No 115
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=60.55 E-value=6.4 Score=18.42 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=36.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCCCEEEECCCHHHHHHHH
Q ss_conf 87899998589878999999999887---916731783368628807899999
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRGMGSFVTSDKALFDQLK 88 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g~G~~V~~~~~~~~~~~ 88 (125)
|...=|+.++||.++|.++++.|++. -+.. +.++|...++....+....
T Consensus 22 s~t~AA~~l~isq~avs~~l~~lE~~~g~~Lf~-R~~~~~~lT~~g~~l~~~~ 73 (89)
T d2esna1 22 NVGTAASELAISASAFSHALGRLRQGLDDELFL-RQGNRMQPTQRAEHLAAAV 73 (89)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEE-EETTEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEE-ECCCCEEECHHHHHHHHHH
T ss_conf 999999987799847559999998657730078-7799443889999999999
No 116
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=60.54 E-value=6 Score=18.61 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 8899999999999764989988817887899998589878999999
Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
|..++|.+.-.+.+....| +.+ |.+++|+..|||+.++-.-+
T Consensus 1 Pr~~~Il~aa~~l~~~~G~---~~~-ti~~Ia~~agvs~~~~y~~F 42 (72)
T d1vi0a1 1 PKYMQIIDAAVEVIAENGY---HQS-QVSKIAKQAGVADGTIYLYF 42 (72)
T ss_dssp CHHHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTSCHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 9899999999999998590---415-59999998794987998888
No 117
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=60.26 E-value=6.4 Score=18.39 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999999997649899888178878999985898789999999
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125)
...+|...|+..+..-.| |.++||+.+|||++||.+-.+
T Consensus 8 ~k~~l~~~i~~~r~~~gl-------tq~~lA~~~gis~~~is~ie~ 46 (89)
T d2o38a1 8 TKLRLAYALNAVIDRARL-------SQAAAAARLGINQPKVSALRN 46 (89)
T ss_dssp HHHHHHHHHHHHHHHTTC-------CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999599-------999999999733708999984
No 118
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=60.01 E-value=6.5 Score=18.36 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC-CCEEEE
Q ss_conf 178878999985898789999999998879167317-833686
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR-GMGSFV 77 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~-g~G~~V 77 (125)
.+ |..+||+..|++...+.+-+..|..-|+++... +.|+|-
T Consensus 40 p~-t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~~~~ 81 (92)
T d1qzza1 40 AD-TLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLR 81 (92)
T ss_dssp CC-SHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCE
T ss_pred CC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCCEEC
T ss_conf 99-9999998878391699999999987798364069873353
No 119
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=59.98 E-value=6.5 Score=18.36 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHH----HHHHHH
Q ss_conf 9888178878999985898789999----999998
Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSR----AYQELE 62 (125)
Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~----Al~~L~ 62 (125)
..++.. |..++|+.||||+..||+ |+..|.
T Consensus 21 ~~~~~~-tl~eI~~~lgiSrerVrqie~~al~kLr 54 (68)
T d2p7vb1 21 DMNTDY-TLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp TSSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999868-8999999979789999999999999988
No 120
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=58.07 E-value=3.7 Score=19.94 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 1788789999858987899999
Q T0586 36 KLPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~A 57 (125)
-| |..+||+.+|||+.||..-
T Consensus 14 gl-tQ~elA~~LGvs~~ti~~y 34 (67)
T d2auwa1 14 NL-SLTTAAEALGISRRMVSYY 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHH
T ss_pred CC-CHHHHHHHHCCCHHHHHHH
T ss_conf 99-9999999959989999999
No 121
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=57.32 E-value=5.1 Score=19.06 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 17887899998589878999999999
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L 61 (125)
-+ |..++|+.+|+|++||+.-+.+-
T Consensus 37 ~~-s~~eIA~~lgis~~tv~~~~~ra 61 (71)
T d1rp3a2 37 EL-PAKEVAKILETSVSRVSQLKAKA 61 (71)
T ss_dssp CC-CHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 48-99999999798999999999999
No 122
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=56.42 E-value=7 Score=18.14 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8789999858987899999999988
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
|..++|..+|+|..||+.-+..+-.
T Consensus 21 s~~eIA~~L~is~~TV~~~~~~i~~ 45 (67)
T d1fsea_ 21 TTKEIASELFISEKTVRNHISNAMQ 45 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999988888899999999999
No 123
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=55.86 E-value=7.6 Score=17.91 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHH----HHHHHH
Q ss_conf 888178878999985898789999----999998
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSR----AYQELE 62 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~----Al~~L~ 62 (125)
.|+.. |..++|+.||||+.-||+ |+..|.
T Consensus 35 ~~~~~-tl~eI~~~lgiSrERVRQie~~al~kLr 67 (87)
T d1ttya_ 35 DGKPK-TLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99968-8999999959889999999999999986
No 124
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=55.45 E-value=7.1 Score=18.12 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 817887899998589878999999999
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L 61 (125)
-+-|+..++|+.+|++..-|..|+...
T Consensus 29 gRePT~~EiA~~l~~~~e~V~~~l~a~ 55 (57)
T d1l0oc_ 29 GRAPTVTEIADHLGISPEDVVLAQEAV 55 (57)
T ss_dssp TSCCBHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999899999999793999999999983
No 125
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=55.44 E-value=5.7 Score=18.75 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 78878999985898789999999
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~ 59 (125)
| |..+||+.+|||++|+.+-.+
T Consensus 15 l-sq~~LA~~lGvs~~~is~ie~ 36 (87)
T d2icta1 15 V-SLREFARAMEIAPSTASRLLT 36 (87)
T ss_dssp C-CHHHHHHHHTCCHHHHHHHHH
T ss_pred C-CHHHHHHHHHHCHHHHHHHHH
T ss_conf 9-999999997246999999998
No 126
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=55.30 E-value=7.8 Score=17.85 Aligned_cols=37 Identities=14% Similarity=0.412 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999997649899888178878999985898789999999998
Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125)
.+..+...+..| .|..++|+.+|+|+++|++.+..+.
T Consensus 19 ~A~a~~~l~~~g--------~s~~eiA~~~G~s~~~V~~~l~L~~ 55 (114)
T d1r71a_ 19 IADFIGRELAKG--------KKKGDIAKEIGKSPAFITQHVTLLD 55 (114)
T ss_dssp HHHHHHHHHHTT--------CCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHC--------CCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 999999998809--------9899999997772999999999967
No 127
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.29 E-value=5.3 Score=18.96 Aligned_cols=29 Identities=7% Similarity=0.196 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 881788789999858987899999999988
Q T0586 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 34 G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
|... +.+++|+.+|||..|++++|+.+..
T Consensus 60 ~~p~-t~~eIa~~~~i~~~~i~k~~k~i~~ 88 (95)
T d1vola1 60 GVPR-TFKEICAVSRISKKEIGRCFKLILK 88 (95)
T ss_dssp TCCC-CHHHHHTTTCSCHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7778-8999998969979999999999999
No 128
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=54.91 E-value=7.9 Score=17.81 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHH----HHHHHHH
Q ss_conf 888178878999985898789999----9999988
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~----Al~~L~~ 63 (125)
.++.+ +..++|+.+|||+..||+ |+..|..
T Consensus 25 ~~~~~-tl~eIa~~lgiS~erVrqi~~~al~kLR~ 58 (61)
T d1ku3a_ 25 DGREH-TLEEVGAYFGVTRERIRQIENKALRKLKY 58 (61)
T ss_dssp TSSCC-CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 99977-89998899798899999999999998726
No 129
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=54.81 E-value=7.7 Score=17.87 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 899999999999764989988817887899998589878999999
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
+-..+...|+..-... .+ |..+||+.+|||++++.+-.
T Consensus 7 ~~~~~g~~ik~~R~~~------gl-tq~~lA~~~gis~~~i~~~e 44 (77)
T d2b5aa1 7 IKRKFGRTLKKIRTQK------GV-SQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp HHHHHHHHHHHHHHHT------TC-CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999980------99-99999989797999999998
No 130
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=52.62 E-value=8.6 Score=17.58 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 1788789999858987899999999988
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
+=|+..++|+.+|++...+++++.....
T Consensus 25 R~Pt~~EiA~~lg~s~~e~~~~l~~~~~ 52 (77)
T d1rp3a1 25 REPTDEEVAKELGISTEELFKTLDKINF 52 (77)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 6979999999979499999999999752
No 131
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.58 E-value=8.5 Score=17.60 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=29.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC-EEEE
Q ss_conf 899998589878999999999887916731783-3686
Q T0586 41 REMGVKLAVNPNTVSRAYQELERAGYIYAKRGM-GSFV 77 (125)
Q Consensus 41 r~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~-G~~V 77 (125)
.+|...|.++..-+.+.+..|-+.||+.+..+. ++|+
T Consensus 50 ~~l~~~F~p~~~~iK~~Ie~LIereYi~R~~~~~~~y~ 87 (90)
T d1ldja1 50 TQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYS 87 (90)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEE
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99746589998999999999986578735899986356
No 132
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=51.90 E-value=7 Score=18.13 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 788789999858987899999999
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~ 60 (125)
+ |..++|+.+|+|.+||+.-+.+
T Consensus 35 ~-s~~eIA~~lgis~~tv~~~l~r 57 (68)
T d1or7a1 35 L-SYEEIAAIMDCPVGTVRSRIFR 57 (68)
T ss_dssp C-CHHHHHHHTTSCHHHHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8-9999999989499999999999
No 133
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=51.48 E-value=5.8 Score=18.69 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.5
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 878999985898789999999998
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~ 62 (125)
+..++|+.+|.|+++|..-++.|.
T Consensus 21 t~~~iA~~~Gks~~~V~~~LrLl~ 44 (93)
T d1vz0a1 21 TQEEVARRVGKARSTVANALRLLQ 44 (93)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHGGG
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999998514699999998999
No 134
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} SCOP: d1r71b_ d1r71d_ d1r71c_
Probab=51.22 E-value=4.9 Score=19.20 Aligned_cols=40 Identities=10% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999999997649899888178878999985898789999999998879
Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAG 65 (125)
Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G 65 (125)
.+..+...+.. | . |..++|+.+|.|+++|.+.+..|.--.
T Consensus 19 ~A~a~~rl~~~-----g--~-t~~eiA~~lGks~s~Vs~~l~Ll~lp~ 58 (114)
T d1r71a_ 19 IADFIGRELAK-----G--K-KKGDIAKEIGKSPAFITQHVTLLDLPE 58 (114)
T ss_dssp HHHHHHHHHHT-----T--C-CHHHHHHHHTCCHHHHHHHHGGGSCCH
T ss_pred HHHHHHHHHHH-----C--C-CHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999884-----1--6-888999998413899999998846888
No 135
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=50.91 E-value=9.1 Score=17.40 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH------HCCEEEECCCC
Q ss_conf 9888178878999985898789999999998------87916731783
Q T0586 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELE------RAGYIYAKRGM 73 (125)
Q Consensus 32 ~~G~~LPser~La~~~~VSr~TVr~Al~~L~------~~G~i~~~~g~ 73 (125)
.|+..+ |...+|+.|+++.+||.+-+..+. ..|.|++.+|.
T Consensus 18 ~P~~li-~L~~F~e~~~~AKSsISEDl~iik~~~~~~~~G~leTi~GA 64 (73)
T d1o57a1 18 HPHELI-PLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGA 64 (73)
T ss_dssp STTCCB-CHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSEEEEEECST
T ss_pred CCCCEE-CHHHHHHHHCHHHCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 998547-59999998652102026579999999997299708984587
No 136
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=49.07 E-value=9.7 Score=17.22 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8789999858987899999999988
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
|..++|+.+++|..||+.-+..+-.
T Consensus 21 s~~eIA~~l~iS~~TV~~~~~~i~~ 45 (65)
T d1l3la1 21 TMEEIADVEGVKYNSVRVKLREAMK 45 (65)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8889999978889999999999999
No 137
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=49.01 E-value=9.7 Score=17.21 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999976498998881788789999858987899999999988
Q T0586 21 WMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 21 ~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
.+...+..| + |-.++|..++||..||+.-+..+..
T Consensus 13 ~vl~ll~~G-------~-s~~eIA~~l~iS~~TV~~~~~~i~~ 47 (67)
T d1a04a1 13 DILKLIAQG-------L-PNKMIARRLDITESTVKVHVKHMLK 47 (67)
T ss_dssp HHHHHHHTT-------C-CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-------C-CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999967-------9-9899999978888899999999999
No 138
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=48.94 E-value=8.8 Score=17.50 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.7
Q ss_pred HCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 589878999999999887916731
Q T0586 47 LAVNPNTVSRAYQELERAGYIYAK 70 (125)
Q Consensus 47 ~~VSr~TVr~Al~~L~~~G~i~~~ 70 (125)
.++|.++|=.+++.|+++|+|...
T Consensus 32 w~~s~g~iY~~L~kLe~~Gli~~~ 55 (178)
T d1yg2a_ 32 WKASHQQVYRELNKMGEQGLVTCV 55 (178)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 179977099999999978984778
No 139
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=48.60 E-value=7.4 Score=17.99 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 88999999999997649899888178878999985898789999999998
Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~ 62 (125)
.+|..+...+....+.-.|.--.- ...+-|+.+||||+|+++=++.+.
T Consensus 42 ~~l~~~~~~~E~~lI~~aL~~~~G--n~~~AA~~LGI~R~TL~~Klk~~g 89 (91)
T d1ntca_ 42 NLLSEAQPELERTLLTTALRHTQG--HKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTT--CTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 179999999999999999999599--599999997988999999999878
No 140
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.12 E-value=10 Score=17.12 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEE
Q ss_conf 88817887899998589878999999999887916731783368
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
.|+.. -..+|++++.|.+-++.+.+.+|..++-|.. ++.+|+
T Consensus 13 agspv-k~~ql~k~cqVpkk~lNqVL~rlkke~kVsl-~~patW 54 (57)
T d1j75a_ 13 DGGPV-KIGQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PEPATW 54 (57)
T ss_dssp HCSCE-EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EETTEE
T ss_pred CCCCH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CCCCCC
T ss_conf 59834-7999999978878899999999975555146-887501
No 141
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.94 E-value=7.3 Score=18.02 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE---CCCCEEEECCC
Q ss_conf 81788789999858987899999999988791673---17833686288
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA---KRGMGSFVTSD 80 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~---~~g~G~~V~~~ 80 (125)
.|+-...+||.+||++..-+.+-++.|+.+|.|.- -+|+-.|+++.
T Consensus 19 ~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s 67 (72)
T d1wi9a_ 19 SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred CCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCC
T ss_conf 7876399999882996799999999999879865578589888997379
No 142
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=45.19 E-value=11 Score=16.83 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8789999858987899999999988
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
|-.++|..+|+|..||+.-+..+..
T Consensus 29 s~~eIA~~l~iS~~TV~~~~~~i~~ 53 (70)
T d1yioa1 29 MNKQIAGELGIAEVTVKVHRHNIMQ 53 (70)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999998979799999999999999
No 143
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1u6ga3
Probab=44.32 E-value=11 Score=16.75 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 99888178878999985898789999999998879167317833
Q T0586 31 WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 31 l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G 74 (125)
|...+.+ |..+|++..|++...+++++..|...+++...+..+
T Consensus 204 FN~~~~l-t~~~l~~~~~i~~~~l~~~L~~L~~~kil~~~~~~~ 246 (276)
T d1ldja3 204 YNTEDAY-TVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENA 246 (276)
T ss_dssp GGSSSEE-EHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTC
T ss_pred HCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 6289974-778999885889989999988875188266426788
No 144
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=44.05 E-value=12 Score=16.72 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999997649899888178878999985898789999999998879
Q T0586 19 SDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAG 65 (125)
Q Consensus 19 ~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G 65 (125)
.+.+.+.|...- .+.+ +..+||+.+|+|+.+..+.++..-...
T Consensus 5 i~~v~~yI~~~~---~~~~-tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 5 IHSILDWIEDNL---ESPL-SLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp HHHHHHHHHTTT---TSCC-CCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCC---CCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 999999998654---7999-999999998939999999999999919
No 145
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=43.64 E-value=12 Score=16.68 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999764989988817887899998589878999999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
.++...|+..+.... + |..+||+..||++++|.+-.
T Consensus 5 ~~l~~~i~~~r~~~g------l-tq~elA~~~gv~~~~is~ie 40 (69)
T d2a6ca1 5 SQLLIVLQEHLRNSG------L-TQFKAAELLGVTQPRVSDLM 40 (69)
T ss_dssp HHHHHHHHHHHHTTT------C-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------C-CHHHHHHHHHCCHHHHHHHH
T ss_conf 999999999999969------9-99999999874784799997
No 146
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=41.87 E-value=9.7 Score=17.23 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 788789999858987899999
Q T0586 37 LPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~A 57 (125)
+ |..+||+.+|||+.||.+-
T Consensus 17 l-tq~~lA~~~gvs~~ti~~~ 36 (65)
T d2croa_ 17 M-TQTELATKAGVKQQSIQLI 36 (65)
T ss_dssp C-CHHHHHHHHTSCHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHH
T ss_conf 9-9999999978679499987
No 147
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=41.80 E-value=7.3 Score=18.02 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 976498998881788789999858987899999999
Q T0586 25 QMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 25 ~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~ 60 (125)
.|...--+-|. |.++|+.+.|+|.+|++.|+.+
T Consensus 13 dI~AaL~krG~---sLa~lsr~~gls~stl~naL~r 45 (74)
T d1nera_ 13 DVIAGLKKRKL---SLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHTTSSC---CHHHHHHHHSCCHHHHHHTTTS
T ss_pred HHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99999999688---7999999909987899999837
No 148
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.53 E-value=10 Score=17.06 Aligned_cols=35 Identities=9% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCEEEECCC-CEEEE
Q ss_conf 999858987899999999988791673178-33686
Q T0586 43 MGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125)
Q Consensus 43 La~~~~VSr~TVr~Al~~L~~~G~i~~~~g-~G~~V 77 (125)
|...|.++..-+.+++..|-+.|||.+..+ ..+|+
T Consensus 54 l~~~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~ 89 (92)
T d1iuya_ 54 LKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYT 89 (92)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEE
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 857589999999999999986346621799997256
No 149
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=41.18 E-value=13 Score=16.43 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=20.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8789999858987899999999988
Q T0586 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L~~ 63 (125)
+..++|+.+++|..||+.-+..+-.
T Consensus 39 s~~eIA~~l~iS~~TV~~~~~~i~~ 63 (87)
T d1p4wa_ 39 LVTEIAKKLNRSIKTISSQKKSAMM 63 (87)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987869799999999999999
No 150
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=40.94 E-value=10 Score=17.08 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 788789999858987899999
Q T0586 37 LPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~A 57 (125)
+ |..+||+..|||++|+.+-
T Consensus 15 ~-tq~elA~~~gis~~~is~~ 34 (66)
T d1utxa_ 15 I-SQSELAALLEVSRQTINGI 34 (66)
T ss_dssp C-CHHHHHHHHTSCHHHHHHH
T ss_pred C-CHHHHHHHCCCCHHHHHHH
T ss_conf 9-9999988635579899999
No 151
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=40.45 E-value=7.9 Score=17.82 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 89999999999976498998881788789999858987899999
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125)
--.+.+..|...|..-.-. ..| |..+||+.+|||++++.+-
T Consensus 5 ~~~~~~~~l~~~i~~~R~~--~gl-tq~~lA~~lgis~~~is~~ 45 (87)
T d1lmb3_ 5 EQLEDARRLKAIYEKKKNE--LGL-SQESVADKMGMGQSGVGAL 45 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--CCC-CHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999999999999--399-9999998867228889999
No 152
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=39.65 E-value=13 Score=16.43 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=12.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 789999858987899999999
Q T0586 40 VREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 40 er~La~~~~VSr~TVr~Al~~ 60 (125)
..+-|+.+|+||+|+++=++.
T Consensus 65 ~~~aA~~LGisR~tL~~klk~ 85 (89)
T d1etxa_ 65 ATRAALMMGINRGTLRKKLKK 85 (89)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999989789999999998
No 153
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=39.30 E-value=14 Score=16.25 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE
Q ss_conf 178878999985898789999999998879167317833686
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
.+ +..++-+.+|+||..+-.-+..|...|+..+.-+.-..+
T Consensus 18 ~~-~v~~frd~~g~sRK~ai~lLE~~D~~~~T~R~gd~Rvl~ 58 (60)
T d1lvaa4 18 PF-GLAEARDALGSSRKYVLPLLEYLDQVKFTRRVGDKRVVV 58 (60)
T ss_dssp CB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEEC
T ss_conf 88-399999997851989999999986449857629997725
No 154
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=39.09 E-value=6.4 Score=18.42 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCEEEECCCCEEEECCC
Q ss_conf 8789999999998879167317833686288
Q T0586 50 NPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
Q Consensus 50 Sr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
.=.+.++|...|+..|+-....|.|.+|...
T Consensus 8 ~G~s~~~A~~~l~~~gl~v~~~g~g~~V~~Q 38 (58)
T d1pyya2 8 YGWTKETAETLAKWLNIELEFQGSGSTVQKQ 38 (58)
T ss_dssp TTCBHHHHHHHHHHTTCEEEEESCCSEEEEE
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCEEEEEE
T ss_conf 7986999999999869989982385699997
No 155
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.79 E-value=14 Score=16.20 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 998881788789999858987899999999988791673178
Q T0586 31 WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
Q Consensus 31 l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g 72 (125)
|...+.+ |..+|++..|++...+++++..|...+++...+.
T Consensus 204 FN~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~kll~~~~~ 244 (276)
T d1ldja3 204 YNTEDAY-TVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDE 244 (276)
T ss_dssp GGSSSEE-EHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCT
T ss_pred HCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC
T ss_conf 1577765-7999999879199999999999986897785379
No 156
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=38.03 E-value=12 Score=16.53 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 17887899998589878999999
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al 58 (125)
.+ |..+||+..|||++||.+--
T Consensus 14 gl-tq~~la~~~gis~~~i~~~E 35 (68)
T d1b0na2 14 GY-SLSELAEKAGVAKSYLSSIE 35 (68)
T ss_dssp TC-CHHHHHHHHTCCHHHHHHHH
T ss_pred CC-CHHHHHHHHCCCHHHHHHHH
T ss_conf 99-99999989797999999998
No 157
>d1xs9a_ i.11.1.1 (A:) Ternary complex formed between MarA, the alpha-CTD of RNA polymerase and DNA {Escherichia coli [TaxId: 562]}
Probab=37.93 E-value=7.1 Score=18.09 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999764989988817887899998589878999999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L 61 (125)
.....+.+.+.|...- .+.+ +..+||+.+|+|+.++.+.++..
T Consensus 9 ~~~~i~~v~~~i~~~~---~~~~-~l~~la~~~~~s~~~l~r~Fk~~ 51 (129)
T d1xs9a_ 9 DAITIHSILDWIEDNL---ESPL-SLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHTTTTTHHHHHTTS---SSSC-CCTTTGGGGSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH---CCCC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 3689999999998600---5899-98899988689999999999998
No 158
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=37.63 E-value=14 Score=16.08 Aligned_cols=27 Identities=4% Similarity=0.055 Sum_probs=22.6
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 888178878999985898789999999
Q T0586 33 GEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 33 ~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125)
-|.-.+|.+|-|..||||+.||+.=++
T Consensus 60 dG~~Y~S~~EAAr~LgIs~~TI~~RiK 86 (96)
T d1i3ja_ 60 DGVIFDCAADAARHFKISSGLVTYRVK 86 (96)
T ss_dssp TTEEESSHHHHHHHHTCCHHHHHHHHH
T ss_pred CCEEECCHHHHHHHCCCCHHHHHHHHC
T ss_conf 575714678999870898678554321
No 159
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=37.37 E-value=15 Score=16.05 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 899999999999764989988817887899998589878999999
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
+...|...|+....... + |..+||+..|||++++.+-.
T Consensus 5 ~~~~ig~~lr~~R~~~g------~-sq~~lA~~~gis~~~i~~~E 42 (79)
T d1y9qa1 5 FKSQIANQLKNLRKSRG------L-SLDATAQLTGVSKAMLGQIE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHTT------C-CHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC------C-CHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999829------9-99999998771164899998
No 160
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.28 E-value=13 Score=16.48 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 788789999858987899999
Q T0586 37 LPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~A 57 (125)
+ |..+||+.+|||++++.+-
T Consensus 20 l-tq~~lA~~~gis~~~is~~ 39 (78)
T d1x57a1 20 L-TQKDLATKINEKPQVIADY 39 (78)
T ss_dssp C-CHHHHHHHHTSCHHHHHHH
T ss_pred C-CHHHHHHCCCCCHHHHHHH
T ss_conf 9-7267887188789999999
No 161
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=37.23 E-value=13 Score=16.47 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 178878999985898789999999
Q T0586 36 KLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 36 ~LPser~La~~~~VSr~TVr~Al~ 59 (125)
.+ |..+||+..|||++|+.+-.+
T Consensus 16 g~-tq~~lA~~~gvs~~~i~~~e~ 38 (66)
T d2r1jl1 16 KI-RQAALGKMVGVSNVAISQWER 38 (66)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHT
T ss_pred CC-CHHHHHHHHCCCHHHHHHHHC
T ss_conf 99-999999997989999999986
No 162
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=36.86 E-value=15 Score=16.00 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 898789999999998879167317
Q T0586 48 AVNPNTVSRAYQELERAGYIYAKR 71 (125)
Q Consensus 48 ~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125)
.+|..|+=.+++.|+++|+|....
T Consensus 43 ~~~~gtiY~~L~rLe~~G~I~~~~ 66 (114)
T d2esha1 43 IGHMGNIYRVLADLEESGFLSTEW 66 (114)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 699773799999999889849985
No 163
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=36.59 E-value=15 Score=15.97 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9889999999999976498998881788789999858987899999999
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~ 60 (125)
.++-+-=.+.|......-.+ ...+-|+.+||||+|..+=++.
T Consensus 15 ~~l~~~Er~~I~~aL~~~~g-------n~~~aA~~LGIsR~TL~rkmkk 56 (60)
T d1umqa_ 15 MSADRVRWEHIQRIYEMCDR-------NVSETARRLNMHRRTLQRILAK 56 (60)
T ss_dssp SCHHHHHHHHHHHHHHHTTS-------CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCC-------CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999999999668-------5999999989889999999997
No 164
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.42 E-value=15 Score=15.95 Aligned_cols=70 Identities=13% Similarity=0.317 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHH----------C-----CC---HHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 8899999999999764989988-8178878999985----------8-----98---78999999999887916731783
Q T0586 13 PIYSQISDWMKKQMITGEWKGE-DKLPSVREMGVKL----------A-----VN---PNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G-~~LPser~La~~~----------~-----VS---r~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
-+.+.|.+.|.+.=+...|+.. +.++|.-.||..= + .| ++--.+|++.|+++|+|..+.+.
T Consensus 20 lLsekikeFL~EnkVq~Fyq~ELEtVesL~sla~qPv~~s~~s~q~~~~~~stskqI~siFKeAi~~Lqe~G~VFqK~~~ 99 (120)
T d1wj5a_ 20 LLSEKIKEFLQEKKMQSFYQQELETVESLQSLASRPVTHSTGSDQVELKDSGTSGVAQRVFKNALQLLQEKGLVFQRDSG 99 (120)
T ss_dssp HHHHHHHHHHHHHTCSCBCHHHHHTCHHHHHHHSSCCSCCSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHTSEECSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 99999999998745644118888879999998608752343075525888737899999999999999877878841798
Q ss_pred ---EEEECCCHH
Q ss_conf ---368628807
Q T0586 74 ---GSFVTSDKA 82 (125)
Q Consensus 74 ---G~~V~~~~~ 82 (125)
=++|+..+.
T Consensus 100 ~D~lYyVT~qDK 111 (120)
T d1wj5a_ 100 SDKLYYVTTKDK 111 (120)
T ss_dssp SSCCBEECSSSC
T ss_pred CCCEEEEECCCC
T ss_conf 653488613554
No 165
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=35.82 E-value=15 Score=15.89 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 8999999999997649899888178878999985898789999
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125)
-.++|.+.....+....+ +.+ |.+++|+..|||++|+-.
T Consensus 7 t~~~I~~aa~~l~~~~G~---~~~-sv~~Ia~~agvs~~t~Y~ 45 (71)
T d2iu5a1 7 TQKIIAKAFKDLMQSNAY---HQI-SVSDIMQTAKIRRQTFYN 45 (71)
T ss_dssp HHHHHHHHHHHHHHHSCG---GGC-CHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCCCHHHH
T ss_conf 999999999999998496---407-799999875716458977
No 166
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=35.03 E-value=16 Score=15.81 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999976498998881788789999858987899999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125)
++|.+.-.+.+... | .+ |.+++|+..|||+.|+-.-
T Consensus 4 ~~Il~aa~~l~~~~----G-~~-ti~~Ia~~agvs~~~iY~~ 39 (65)
T d2g7ga1 4 ERIAEAALELVDRD----G-DF-RMPDLARHLNVQVSSIYHH 39 (65)
T ss_dssp HHHHHHHHHHHHHH----S-SC-CHHHHHHHTTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHC----C-CC-CHHHHHHHHCCCCCCHHHC
T ss_conf 99999999999786----7-97-8999998857061313115
No 167
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=34.81 E-value=12 Score=16.52 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=18.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88789999858987899999999
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQE 60 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~ 60 (125)
.+.++.|+.+||||+|+.+=++.
T Consensus 34 gn~~~aA~~Lgisr~tL~rKlkk 56 (61)
T d1g2ha_ 34 PSTRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999979889999999999
No 168
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=34.60 E-value=15 Score=16.03 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=15.1
Q ss_pred CHHHHHHHHCCCHHHHHHH
Q ss_conf 8789999858987899999
Q T0586 39 SVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~A 57 (125)
|..+||+..|||+.++.+-
T Consensus 16 sq~elA~~~gvs~~~is~~ 34 (63)
T d1r69a_ 16 NQAELAQKVGTTQQSIEQL 34 (63)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
T ss_conf 6999999837399999998
No 169
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=34.33 E-value=14 Score=16.24 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999999999976-49899888178878999985898789999
Q T0586 16 SQISDWMKKQMI-TGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
Q Consensus 16 ~qI~~~l~~~I~-~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125)
++|.+.-.+.+. .+.| +.+ |.+++|+..|||+.|+-.
T Consensus 5 ~~Ii~aa~~l~~e~~G~---~~~-t~~~Ia~~agvs~~~iy~ 42 (68)
T d1z0xa1 5 DTIIAAAFSLLEKSPTL---EQL-SMRKVAKQLGVQAPAIYW 42 (68)
T ss_dssp HHHHHHHHHHHHHSCCG---GGC-CHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHCCCC---CCC-CHHHHHHHHCCCHHHHHH
T ss_conf 99999999999876792---316-799999987726568999
No 170
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=34.15 E-value=16 Score=15.72 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999764989988817887899998589878999999
Q T0586 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 17 qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
++.+.|+..-... .| |..+||+..|||++|+.+--
T Consensus 9 ~~g~~ik~~R~~~------gl-tq~~lA~~~gis~~~i~~~E 43 (69)
T d1y7ya1 9 KFGQRLRELRTAK------GL-SQETLAFLSGLDRSYVGGVE 43 (69)
T ss_dssp HHHHHHHHHHHHT------TC-CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC------CC-CHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999983------99-99999868299898999998
No 171
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=34.13 E-value=16 Score=15.88 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q ss_conf 788789999858987899999
Q T0586 37 LPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~A 57 (125)
+ +..+||+..|||++|+.+-
T Consensus 26 ~-t~~eLA~~~Gvs~~~ls~i 45 (82)
T d2ofya1 26 M-SMVTVAFDAGISVETLRKI 45 (82)
T ss_dssp S-CHHHHHHHHTCCHHHHHHH
T ss_pred C-CHHHHHHHHCCCHHHHHHH
T ss_conf 7-9999998971799999999
No 172
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=33.86 E-value=17 Score=15.69 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=37.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC---CEEEECCC----CEEEECCCHHHHHHHHHH
Q ss_conf 887899998589878999999999887---91673178----336862880789999999
Q T0586 38 PSVREMGVKLAVNPNTVSRAYQELERA---GYIYAKRG----MGSFVTSDKALFDQLKKE 90 (125)
Q Consensus 38 Pser~La~~~~VSr~TVr~Al~~L~~~---G~i~~~~g----~G~~V~~~~~~~~~~~~~ 90 (125)
-|...=|+.+|+|..+|.++++.|+++ -++++.+| .|+.+++....+......
T Consensus 33 gs~~~AA~~l~~sq~avs~~i~~lE~~lg~~Lf~R~~~g~~~~~~~LT~~G~~ll~~a~~ 92 (127)
T d1b9ma1 33 GSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDL 92 (127)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 995899988158762999999999998198179962687644200112899999999999
No 173
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.85 E-value=17 Score=15.69 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999997649899888178878999985898789999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125)
-+||.+.-...+....| +.+ |.+++|+..|||+.++-.-+.
T Consensus 6 re~Il~aa~~~~~~~G~---~~~-ti~~Ia~~agvs~~s~y~~F~ 46 (79)
T d2fbqa1 6 VERILDAAEQLFAEKGF---AET-SLRLITSKAGVNLAAVNYHFG 46 (79)
T ss_dssp HHHHHHHHHHHHHHHCS---TTC-CHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999999999998693---504-099999998828557878776
No 174
>d1qmea1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} SCOP: d1pmda1 d1pyya1 d1k25a1
Probab=33.70 E-value=6 Score=18.60 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECCC
Q ss_conf 8178878999985898789999999998879167317833686288
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
.++|+.+. .++++|...|+..|+-...-|.|..|...
T Consensus 16 ~~vP~v~G---------~s~~~A~~~L~~~gl~~~v~G~G~~V~~Q 52 (72)
T d1qmea1 16 YPMPSVKD---------ISPGDLAEELRRNLVQPIVVGTGTKIKNS 52 (72)
T ss_dssp CBCCCCTT---------CCHHHHHHHHHTTTCEEEEESSCSSEEEE
T ss_pred EECCCEEC---------CCHHHHHHHHHHCCCEEEEEECCCEEEEE
T ss_conf 11573125---------99799999998279758897351035640
No 175
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.52 E-value=17 Score=15.65 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHH-----CCCHHHHHHHHHHH-------HHCCEEEECCCCEEEEC
Q ss_conf 888178878999985-----89878999999999-------88791673178336862
Q T0586 33 GEDKLPSVREMGVKL-----AVNPNTVSRAYQEL-------ERAGYIYAKRGMGSFVT 78 (125)
Q Consensus 33 ~G~~LPser~La~~~-----~VSr~TVr~Al~~L-------~~~G~i~~~~g~G~~V~ 78 (125)
+|..+ |-.+|.+.. .++..++.-.+..| ....+|.+.+|.|+...
T Consensus 48 ~g~~v-sr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~~~~I~Tvrg~GY~l~ 104 (106)
T d1ys7a1 48 KTAVL-SRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 104 (106)
T ss_dssp TTCCB-CHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC--CCCEEEETTTEEEEC
T ss_pred HHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEE
T ss_conf 13444-5899886514877777722199999999998615699971999688267998
No 176
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=33.48 E-value=17 Score=15.65 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999764989988817887899998589878999999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
++|.....+.+....| +.+ |.+++|+..|||+.++-.-+
T Consensus 4 e~i~~aa~~l~~~~G~---~~~-ti~~Ia~~agvs~~~iy~~F 42 (69)
T d2np5a1 4 ERLAAALFDVAAESGL---EGA-SVREVAKRAGVSIGAVQHHF 42 (69)
T ss_dssp HHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 9999999999998491---406-79999988398887998888
No 177
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.55 E-value=17 Score=15.55 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999999999997649899888178878999985898789999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125)
-++|.+.-.+.+....+ +.+ |.+++|+..|||+.++-.
T Consensus 6 r~~Il~aa~~l~~~~g~---~~~-si~~ia~~~gvs~~~~y~ 43 (68)
T d2g7la1 6 RRWIVDTAVALMRAEGL---EKV-TMRRLAQELDTGPASLYV 43 (68)
T ss_dssp HHHHHHHHHHHHHHHCS---SSC-CHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHH
T ss_conf 99999999999998490---307-899999997828767628
No 178
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}
Probab=32.29 E-value=9.1 Score=17.39 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 78878999985898789999999998879167317
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125)
+ +..-|+..||||+.++++-+..-.++|.|.+.|
T Consensus 145 ~-~~evL~~aF~v~~e~~~kl~~~~~~~g~Iv~~P 178 (178)
T d1dgwa_ 145 F-SKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178 (178)
T ss_dssp S-CHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECC
T ss_conf 9-999999880999999999985555788588295
No 179
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=30.95 E-value=18 Score=15.38 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHCCEEEECCCCEEEE
Q ss_conf 99999976498998881788789999-85898789999999998879167317833686
Q T0586 20 DWMKKQMITGEWKGEDKLPSVREMGV-KLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
Q Consensus 20 ~~l~~~I~~G~l~~G~~LPser~La~-~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
..|+.-|.++.+..-+-| ...|.+ -+.|+.+||.+=++.| |++....+.|.++
T Consensus 7 ~~I~~li~~~~i~tQ~eL--~~~L~~~G~~vTQaTlSRDL~eL---g~vKv~~~~g~~~ 60 (63)
T d2p5ka1 7 IKIREIITSNEIETQDEL--VDMLKQDGYKVTQATVSRDIKEL---HLVKVPTNNGSYK 60 (63)
T ss_dssp HHHHHHHHHSCCCSHHHH--HHHHHHTTCCCCHHHHHHHHHHH---TCEEEEETTTEEE
T ss_pred HHHHHHHHHCCCCCHHHH--HHHHHHCCCCEEHHHHHHHHHHH---CCEEEECCCCCEE
T ss_conf 999999984897889999--99999869875289988789991---9888357998688
No 180
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.61 E-value=19 Score=15.34 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 9999999999764989988817887899998589878999999999887916731783
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
..||..|...=-.|. ..+++....|+..+++.++++.|+..++|-.....
T Consensus 16 ~lVY~~I~~ag~~GI--------W~~dir~ktnL~~~~l~K~LK~Lesk~lIK~VksV 65 (78)
T d2dk5a1 16 KLVYQIIEDAGNKGI--------WSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSV 65 (78)
T ss_dssp HHHHHHHHHHCTTCE--------EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHCCCCCE--------EHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 999999997165662--------49999987399989999999999736871544145
No 181
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=30.61 E-value=17 Score=15.59 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99999999997649899888178878999985898789999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125)
++|.+.-.+.+....+ +.+ |.+++|+..|||+.++-.
T Consensus 6 e~Il~aa~~l~~~~G~---~~~-t~~~Ia~~agvs~~slY~ 42 (72)
T d1zk8a1 6 QKIVETAAEIADANGV---QEV-TLASLAQTLGVRSPSLYN 42 (72)
T ss_dssp HHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHH
T ss_conf 9999999999998697---756-699999995979999989
No 182
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} SCOP: d1qnta1 d1yfhc1 d1yfhb1 d1t39b1 d1eh6a1 d1eh8a1 d1t38a1 d1sfea1
Probab=30.55 E-value=19 Score=15.34 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98899999999999764989988817887899998589878999999999
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L 61 (125)
+|.+.+|++.|... +|.|.-. |-.++|+..|.+...|-.|+...
T Consensus 2 t~F~~~V~~~l~~~-----IP~G~v~-tYg~iA~~~g~~~raVg~al~~n 45 (81)
T d1mgta1 2 TPFEKKVYEWLTKN-----VKRGSVI-TYGDLAKALNTSPRAVGGAMKRN 45 (81)
T ss_dssp CHHHHHHHHHHHHH-----SCTTCCE-EHHHHHHHTTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH-----CCCCCCC-CHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 87889999999841-----8998504-58899977078406899998707
No 183
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=30.52 E-value=16 Score=15.73 Aligned_cols=40 Identities=5% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999764989988817887899998589878999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
-++|.+.-...+....| +.+ |.+++|+..|||++|+-.-+
T Consensus 8 r~~Il~aa~~l~~~~G~---~~~-s~~~Ia~~agvs~~~lY~~F 47 (77)
T d2gfna1 8 RRALADAVLALIAREGI---SAV-TTRAVAEESGWSTGVLNHYF 47 (77)
T ss_dssp HHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999998590---405-79999998788877998888
No 184
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=30.36 E-value=17 Score=15.66 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 8178878999985898789999
Q T0586 35 DKLPSVREMGVKLAVNPNTVSR 56 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~ 56 (125)
++= +..++|+++||||+|.=+
T Consensus 35 ekk-tqeqiAeelGisr~tLyr 55 (120)
T d2ao9a1 35 EKR-TQDEMANELGINRTTLWE 55 (120)
T ss_dssp CCC-CHHHHHHHHTCCHHHHHH
T ss_pred HHH-HHHHHHHHHCHHHHHHHH
T ss_conf 341-499999995801888988
No 185
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=30.00 E-value=19 Score=15.28 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCEEEECCCCEEEECCC
Q ss_conf 89999999999976498998881788789999858--98789999999998879167317833686288
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA--VNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~--VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
+-.+-|-.+...|..| .-=+.+ -+.+....| |+-.+....++-|+..|||+.. +.++.+.++
T Consensus 3 l~~~RY~~ILkaia~G--~rWs~I--K~yle~~~G~~I~d~~ls~lL~nL~k~~~iek~-~~~Y~i~DP 66 (73)
T d2fnaa1 3 IARKRYLNIMRTLSKC--GKWSDV--KRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEP 66 (73)
T ss_dssp GGHHHHHHHHHHHTTC--BCHHHH--HHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSH
T ss_pred HHHHHHHHHHHHHHCC--CCHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEC-CCEECCCCH
T ss_conf 4588999999999844--969999--999999708878858999999999875764515-973435868
No 186
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.68 E-value=19 Score=15.24 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 7887899998589878999999999887916731783
Q T0586 37 LPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
Q Consensus 37 LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~ 73 (125)
-.|+..|...+|=++.-++.|+..|..+|++-.-...
T Consensus 17 ~Vt~s~l~~~lgW~~~Ra~~aLd~lv~eGl~WvD~Q~ 53 (68)
T d1u5ta2 17 YSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQG 53 (68)
T ss_dssp CCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSS
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 5539999988499899999999999966957876489
No 187
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=29.31 E-value=19 Score=15.34 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999764989988817887899998589878999999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-.-+
T Consensus 7 ~~Il~aa~~l~~~~G~---~~~-ti~~Ia~~agvs~~t~y~~F 45 (72)
T d1pb6a1 7 KAILSAALDTFSQFGF---HGT-RLEQIAELAGVSKTNLLYYF 45 (72)
T ss_dssp HHHHHHHHHHHHHHCT---TTC-CHHHHHHHTTSCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 9999999999998592---506-79999998697867999888
No 188
>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin adenosyltransferase YvqK {Bacillus subtilis [TaxId: 1423]}
Probab=28.34 E-value=12 Score=16.53 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=30.9
Q ss_pred HHHHHHCCCCCCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999764989988--817887899998589878999999999887
Q T0586 22 MKKQMITGEWKGE--DKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 22 l~~~I~~G~l~~G--~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
..+.+.. .++|- =-||+-...+..+++.|+.+|+|=+.+..-
T Consensus 75 ~ID~~~~-~lp~l~~FILPGGs~~~A~lh~aRtv~RRaER~~v~l 118 (161)
T d1rtya_ 75 RIDAYTA-EAPELKKFILPGGSKCASLLHIARTITRRAERRVVAL 118 (161)
T ss_dssp HHHHHHH-HSCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999986-4236662025788789999999999999999999999
No 189
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=28.21 E-value=19 Score=15.34 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 817887899998589878999999
Q T0586 35 DKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 35 ~~LPser~La~~~~VSr~TVr~Al 58 (125)
+.+ |.+++|+..|||+.|+-.-+
T Consensus 18 ~~~-s~~~Ia~~agvs~~tiy~~F 40 (62)
T d2vkva1 18 EGL-TTRKLAQKLGVEQPTLYWHV 40 (62)
T ss_dssp HHC-CHHHHHHHHTSCHHHHHHHS
T ss_pred CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 517-89999988098888999888
No 190
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=27.39 E-value=12 Score=16.50 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCHH------HHHHHHHHHHHCCEEEECCCCE
Q ss_conf 7899998589878------9999999998879167317833
Q T0586 40 VREMGVKLAVNPN------TVSRAYQELERAGYIYAKRGMG 74 (125)
Q Consensus 40 er~La~~~~VSr~------TVr~Al~~L~~~G~i~~~~g~G 74 (125)
...|-+.|||+++ -|++||..|...- +|-+|
T Consensus 7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~----HPDk~ 43 (114)
T d1gh6a_ 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEF----HPDKG 43 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTC----CTTTC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH----CCCCH
T ss_conf 88999990999887889999999999999871----54301
No 191
>d1tbxa_ a.4.5.48 (A:) Hypothetical protein F93 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=27.07 E-value=21 Score=14.95 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=32.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCE---EEECCCHH
Q ss_conf 8999985898789999999998879167317833---68628807
Q T0586 41 REMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG---SFVTSDKA 82 (125)
Q Consensus 41 r~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G---~~V~~~~~ 82 (125)
...-.+|-.|..|--.|-+-|.++|+|.-++-+| .|.++...
T Consensus 28 kkvna~fpmstatfydakkfliqegfi~e~qe~gek~~yltekgk 72 (94)
T d1tbxa_ 28 KKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGK 72 (94)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCE
T ss_conf 774466865310104468888887747888766743688812770
No 192
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.02 E-value=22 Score=14.94 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=52.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC----CCCHHHHHHHHC---------CCHHHHHHHHHHHHHCCE--EEE-
Q ss_conf 7768889889999999999976498998881----788789999858---------987899999999988791--673-
Q T0586 6 PTFHADKPIYSQISDWMKKQMITGEWKGEDK----LPSVREMGVKLA---------VNPNTVSRAYQELERAGY--IYA- 69 (125)
Q Consensus 6 ~~~~~~~Ply~qI~~~l~~~I~~G~l~~G~~----LPser~La~~~~---------VSr~TVr~Al~~L~~~G~--i~~- 69 (125)
..|-++.-.|++++.+|.+.+....-..|.. +-+..++=..|| ||+..+.+|-..++..|+ +.-
T Consensus 4 d~~~s~~lyh~ELArqlae~l~~~~k~~~g~~~~~mItL~Dly~~~NRaR~~G~eLiSP~D~~~Ac~~~e~l~L~p~~Lr 83 (94)
T d1u5tb1 4 EKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLV 83 (94)
T ss_dssp SCCSSSTTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSCEEE
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 54146638999999999999975566418877765566999999998754058732488999999999996799733778
Q ss_pred CCCCEEEE
Q ss_conf 17833686
Q T0586 70 KRGMGSFV 77 (125)
Q Consensus 70 ~~g~G~~V 77 (125)
+-.+|.-|
T Consensus 84 ~f~sgvlv 91 (94)
T d1u5tb1 84 KVNKRILC 91 (94)
T ss_dssp EETTTEEE
T ss_pred EECCCEEE
T ss_conf 82373589
No 193
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=26.73 E-value=22 Score=14.91 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98899999999999764989988817887899998589878999999999
Q T0586 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
Q Consensus 12 ~Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L 61 (125)
+|.+.+|++.|... +|.|+.. |-.++|+..|-+.-.|-.|+..-
T Consensus 2 T~Fq~~V~~~l~~~-----IP~G~v~-TYg~iA~~~g~~~RaVg~a~~~N 45 (81)
T d1mgta1 2 TPFEKKVYEWLTKN-----VKRGSVI-TYGDLAKALNTSPRAVGGAMKRN 45 (81)
T ss_dssp CHHHHHHHHHHHHH-----SCTTCCE-EHHHHHHHTTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH-----CCCCCEE-EHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 86999999999976-----8999807-49999988397479999999859
No 194
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=26.48 E-value=21 Score=14.95 Aligned_cols=40 Identities=10% Similarity=0.324 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999764989988817887899998589878999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
.++|.+.-.+.|....| +.+ |.+++|+..|||++|+-.-+
T Consensus 6 r~~Il~aa~~l~~~~G~---~~~-s~~~Ia~~agvs~~~iY~~F 45 (74)
T d2g7sa1 6 ADDILQCARTLIIRGGY---NSF-SYADISQVVGIRNASIHHHF 45 (74)
T ss_dssp HHHHHHHHHHHHHHHCG---GGC-CHHHHHHHHCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCCCHHHHHC
T ss_conf 99999999999998591---506-79999998781841698888
No 195
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.12 E-value=22 Score=14.84 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999764989988817887899998589878999999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
++|.+.-...+....| +.+ |.+++|+..|||+.|+-.-+
T Consensus 6 ~~Il~aa~~l~~~~G~---~~~-t~~~Ia~~agvs~~t~Y~~F 44 (73)
T d1t56a1 6 LAILATAENLLEDRPL---ADI-SVDDLAKGAGISRPTFYFYF 44 (73)
T ss_dssp HHHHHHHHHHHHHSCG---GGC-CHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 9999999999997591---507-79999998698888998888
No 196
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.07 E-value=22 Score=14.83 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99999999997649899888178878999985898789999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~ 56 (125)
++|.+.-.+.+....| +.+ |.+++|+..|||+.++-.
T Consensus 8 ~~il~aa~~l~~~~G~---~~~-t~~~Ia~~agvs~~~~Y~ 44 (75)
T d2hyja1 8 GRILGRAAEIASEEGL---DGI-TIGRLAEELEMSKSGVHK 44 (75)
T ss_dssp HHHHHHHHHHHHHHCG---GGC-CHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHH
T ss_conf 9999999999997590---307-699999988909899988
No 197
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}
Probab=26.02 E-value=22 Score=14.94 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=24.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH--HHCCEEEECC
Q ss_conf 87899998589878999999999--8879167317
Q T0586 39 SVREMGVKLAVNPNTVSRAYQEL--ERAGYIYAKR 71 (125)
Q Consensus 39 ser~La~~~~VSr~TVr~Al~~L--~~~G~i~~~~ 71 (125)
|..-||..|||++.|+++-...= ...|.|.+..
T Consensus 197 s~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~ 231 (239)
T d1fxza1 197 TLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK 231 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHSCC-----CCSEEECS
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 99999999796999999986624535577889986
No 198
>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.82 E-value=23 Score=14.80 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 99999999764989988817887899998589878999999999887916731783368628
Q T0586 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 18 I~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
+...+...|..| -|+.++...|+.|.--.+--++.|+. |++.-+.|-|+.++.
T Consensus 32 vRrkiLrmi~kg--------rsedEIm~~l~LSkkqldYHLk~LE~-GfciErvge~w~~T~ 84 (89)
T d1y0ua_ 32 VRRKILRMLDKG--------RSEEEIMQTLSLSKKQLDYHLKVLEA-GFCIERVGERWVVTD 84 (89)
T ss_dssp HHHHHHHHHHTT--------CCHHHHHHHHTCCHHHHHHHHHHHHH-TTSEEEETTEEEECT
T ss_pred HHHHHHHHHHCC--------CCHHHHHHHHCCCHHHHHHHHHHHHC-CCEEEECCCCEEECC
T ss_conf 999999999734--------78999999956579999999999874-612686188235532
No 199
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=25.66 E-value=7 Score=18.14 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 688898899999999999764--9899888178878999985898789999999998879167317
Q T0586 8 FHADKPIYSQISDWMKKQMIT--GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
Q Consensus 8 ~~~~~Ply~qI~~~l~~~I~~--G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~~~~ 71 (125)
+....|+-.+.+..+...|.. |.|| . +.|-|.+.++. .-++-+++.|...|+|...|
T Consensus 14 ~~~~~plr~~~ar~ll~~I~~~f~tLP----F-s~RwL~~~~~~--~k~~~~L~~lv~~g~v~~Yp 72 (77)
T d1xgsa1 14 YVRDVPVRVAQARFLLAKIKREYGTLP----F-AYRWLQNDMPE--GQLKLALKTLEKAGAIYGYP 72 (77)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHTTTSC----E-ESGGGTTTSCH--HHHHHHHHHHHHHTSEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCC----E-EHHHHHHHHHH--HHHHHHHHHHHHCCCCCCCC
T ss_conf 717877778899999999999779731----3-08877540026--89999999999888932799
No 200
>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=24.78 E-value=12 Score=16.55 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCEEEECCCCEEEECC
Q ss_conf 8999999999887916731783368628
Q T0586 52 NTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 52 ~TVr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
.++++|...|...|+-...-|.|..|..
T Consensus 13 ~s~~~A~~~L~~~gl~~~v~G~G~~V~~ 40 (61)
T d1pyya1 13 ISPGDLAEELRRNLVQPIVVGTGTKIKN 40 (61)
T ss_dssp CCHHHHHHHHHHTTCEEEEESSCSSEEE
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCEEEE
T ss_conf 8999999999987986998569878999
No 201
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=24.74 E-value=24 Score=14.67 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999764989988817887899998589878999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
-++|.+.-.+.+....+ +.+ |.+++|+..|||++|+-.-+
T Consensus 6 r~~Il~aa~~l~~~~G~---~~~-s~~~Ia~~agvs~~t~Y~~F 45 (74)
T d1v7ba1 6 KEMILRTAIDYIGEYSL---ETL-SYDSLAEATGLSKSGLIYHF 45 (74)
T ss_dssp HHHHHHHHHHHHHHSCS---TTC-CHHHHHHHHCSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCCCHHHHHC
T ss_conf 99999999999998595---635-79999988496922385507
No 202
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.49 E-value=24 Score=14.64 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999985898789999999998
Q T0586 42 EMGVKLAVNPNTVSRAYQELE 62 (125)
Q Consensus 42 ~La~~~~VSr~TVr~Al~~L~ 62 (125)
+....-+.+..+|++-++...
T Consensus 10 E~fRRs~~~K~~vkrl~~~~~ 30 (89)
T d1bh9b_ 10 EMYRRSAFPKAAIKRLIQSIT 30 (89)
T ss_dssp HHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHC
T ss_conf 999982088999999999980
No 203
>d1t1ea2 d.58.3.2 (A:12-190) Pro-kumamolisin activation domain {Bacillus sp. MN-32 [TaxId: 198803]}
Probab=24.29 E-value=24 Score=14.62 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE--ECCCCEEEECC
Q ss_conf 999999999997649899888178878999985898789999999998879167--31783368628
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIY--AKRGMGSFVTS 79 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~~L~~~G~i~--~~~g~G~~V~~ 79 (125)
-.++ +.+.+.+--+.-..|..| |-.++++.|+-|..++...-..|+..|+-. ..++..+.+..
T Consensus 40 ~~~l-~~~l~~~~p~sp~yg~~L-t~~e~~~~f~ps~~~~~~V~~wL~~~Gl~v~~~~~~~~~v~~~ 104 (179)
T d1t1ea2 40 GDEL-EAHVERQAALAPHARVHL-EREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAAGTAVLS 104 (179)
T ss_dssp HHHH-HHHHHHHTTSCTTSCCCC-CHHHHHHHHSCCHHHHHHHHHHHHHTTCEEEEEETTTTEEEEE
T ss_pred HHHH-HHHHHHCCCCCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEE
T ss_conf 7899-988860088995215557-9999998878799999999999987689615884699889998
No 204
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=23.06 E-value=16 Score=15.81 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=14.5
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 88789999858987899
Q T0586 38 PSVREMGVKLAVNPNTV 54 (125)
Q Consensus 38 Pser~La~~~~VSr~TV 54 (125)
|+.|.||++.||+.+.|
T Consensus 3 P~arkla~e~gidl~~i 19 (39)
T d2cyua1 3 PAIRRLLAEHNLDASAI 19 (39)
T ss_dssp CTHHHHHHHHTCCGGGS
T ss_pred HHHHHHHHHCCCCHHHC
T ss_conf 89999999939999887
No 205
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=23.05 E-value=25 Score=14.46 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHH----C----CEEEECCCCEEEECC
Q ss_conf 88999999999997649899888178878999985-----8987899999999988----7----916731783368628
Q T0586 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKL-----AVNPNTVSRAYQELER----A----GYIYAKRGMGSFVTS 79 (125)
Q Consensus 13 Ply~qI~~~l~~~I~~G~l~~G~~LPser~La~~~-----~VSr~TVr~Al~~L~~----~----G~i~~~~g~G~~V~~ 79 (125)
++-.+-+.-|...+. .+|..+ |-.+|.+.. .++..++.-.+..|.. . .+|.+.+|.|+...+
T Consensus 24 ~Lt~~E~~lL~~L~~----~~g~~v-sr~~L~~~vwg~~~~~~~~~l~~~I~rLRkkl~~~~~~~~~I~Tv~g~GY~l~~ 98 (99)
T d1opca_ 24 PLTSGEFAVLKALVS----HPREPL-SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 98 (99)
T ss_dssp CCCHHHHHHHHHHHH----STTCCE-EHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCSCTTSCSSEEEETTTEEEECC
T ss_pred ECCHHHHHHHHHHHH----CCCEEC-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECC
T ss_conf 769999999999974----364021-399999875287655443418899999999876278999849996685659777
Q ss_pred C
Q ss_conf 8
Q T0586 80 D 80 (125)
Q Consensus 80 ~ 80 (125)
+
T Consensus 99 d 99 (99)
T d1opca_ 99 D 99 (99)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 206
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=23.01 E-value=25 Score=14.46 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999997649899888178878999985898789999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al~ 59 (125)
-++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-.-+.
T Consensus 6 r~~Il~aa~~l~~~~G~---~~~-si~~Ia~~agvs~~~~Y~~F~ 46 (73)
T d2fx0a1 6 MENILKAAKKKFGERGY---EGT-SIQEIAKEAKVNVAMASYYFN 46 (73)
T ss_dssp HHHHHHHHHHHHHHHCT---TTC-CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999999999998693---517-699999987848649998884
No 207
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=22.28 E-value=26 Score=14.36 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999764989988817887899998589878999999
Q T0586 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 15 y~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
.++|.+...+.+....+ +.+ |.+++|+..|||+.|+-.-+
T Consensus 6 r~~Il~aa~~l~~~~G~---~~~-t~~~Ia~~agvs~~~~y~~F 45 (69)
T d2fq4a1 6 QKAILSASYELLLESGF---KAV-TVDKIAERAKVSKATIYKWW 45 (69)
T ss_dssp HHHHHHHHHHHHHHHCT---TTC-CHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999998392---407-79999999785887999998
No 208
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId: 2336]}
Probab=21.80 E-value=27 Score=14.30 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHH-------HCCEEEECCCCEEEECC
Q ss_conf 888178878999985-----898789999999998-------87916731783368628
Q T0586 33 GEDKLPSVREMGVKL-----AVNPNTVSRAYQELE-------RAGYIYAKRGMGSFVTS 79 (125)
Q Consensus 33 ~G~~LPser~La~~~-----~VSr~TVr~Al~~L~-------~~G~i~~~~g~G~~V~~ 79 (125)
||.-+ |-.+|.+.. .++..+|+-.+..|. ...+|.+.+|.|+...+
T Consensus 44 ~g~vv-s~~~l~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~I~Tv~g~GY~l~~ 101 (102)
T d1kgsa1 44 KNRVV-TKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARD 101 (102)
T ss_dssp TTSCE-EHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTTEEEECC
T ss_pred CCCCC-CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECC
T ss_conf 43345-88999874018775552427999999999986055999839991770089752
No 209
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.70 E-value=27 Score=14.29 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 899999999999764989988817887899998589878999999
Q T0586 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
Q Consensus 14 ly~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~Al 58 (125)
.-++|.+.-...+....+ +.+ |.+++|+..|||+.|+-.-+
T Consensus 6 ~r~~il~aa~~l~~~~G~---~~~-si~~Ia~~agvs~~~~y~~F 46 (71)
T d1ui5a1 6 TRATIIGAAADLFDRRGY---EST-TLSEIVAHAGVTKGALYFHF 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHCT---TTC-CHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHHC
T ss_conf 999999999999998594---626-79999998794876999898
No 210
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.64 E-value=27 Score=14.28 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999976498998881788789999858987899999
Q T0586 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
Q Consensus 16 ~qI~~~l~~~I~~G~l~~G~~LPser~La~~~~VSr~TVr~A 57 (125)
++|.+.-...+....| +.+ |.+++|+..|||+.|+-.-
T Consensus 10 ~~Il~aa~~l~~~~G~---~~~-t~~~Ia~~agvs~~t~y~~ 47 (78)
T d2o7ta1 10 EHIITTTCNLYRTHHH---DSL-TMENIAEQAGVGVATLYRN 47 (78)
T ss_dssp HHHHHHHHHHHHHSCG---GGC-CHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CCC-CHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999998491---406-7999998839988799998
No 211
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]} SCOP: d1l0oc_
Probab=21.40 E-value=27 Score=14.25 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHH
Q ss_conf 81788789999858--98789999999
Q T0586 35 DKLPSVREMGVKLA--VNPNTVSRAYQ 59 (125)
Q Consensus 35 ~~LPser~La~~~~--VSr~TVr~Al~ 59 (125)
.+-|+..++|+.+| ++..-|++.++
T Consensus 26 gR~Pt~~EiA~~l~~~l~~~kv~~~l~ 52 (60)
T d1ku2a1 26 GREPSYEEIAEAMGPGWDAKRVEETLK 52 (60)
T ss_dssp TSCCCHHHHHHHHCSSCCHHHHHHHGG
T ss_pred CCCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999997899987099999888999998
No 212
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.36 E-value=20 Score=15.14 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=28.6
Q ss_pred CCCC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 8998--8817887899998589878999999999887
Q T0586 30 EWKG--EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
Q Consensus 30 ~l~~--G~~LPser~La~~~~VSr~TVr~Al~~L~~~ 64 (125)
.+|| +=-||+-...+..+++.|+..|+|=+.+..-
T Consensus 74 ~lp~l~~FiLPGG~~~~a~lH~aRtv~RRaER~lv~l 110 (149)
T d1noga_ 74 EIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAA 110 (149)
T ss_dssp HHCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5415655145588568889889875432889999999
No 213
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.40 E-value=29 Score=14.11 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHH----CCC--HHHHHHHHHHHHHCCEEEECCC-CEEEE
Q ss_conf 889889999999999976498998881788789-99985----898--7899999999988791673178-33686
Q T0586 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVRE-MGVKL----AVN--PNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125)
Q Consensus 10 ~~~Ply~qI~~~l~~~I~~G~l~~G~~LPser~-La~~~----~VS--r~TVr~Al~~L~~~G~i~~~~g-~G~~V 77 (125)
..-|-|. +-|.+.|..-.=+.|.-++.... +...| ++. +.-++.|++.+...|.|+...| +|+|=
T Consensus 4 ~~~pty~---~MI~eAI~~l~er~GsS~~aI~KyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~L~q~kG~sG~fk 76 (92)
T d1usta_ 4 ASSKSYR---ELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVK 76 (92)
T ss_dssp SCCCCHH---HHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEE
T ss_pred CCCCCHH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEE
T ss_conf 8998999---999999997489899799999999998876767788999999999999987696785048987656
Done!