Query T0587 3NDV, , 373 residues Match_columns 373 No_of_seqs 159 out of 465 Neff 5.3 Searched_HMMs 22458 Date Sun Jun 13 15:25:19 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0587.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0587.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1b65_A DMPA, protein (aminopep 100.0 0 0 780.3 30.7 358 2-372 10-373 (375) 2 2drh_A PH0078 protein, 361AA l 100.0 0 0 756.7 31.0 354 3-372 2-358 (361) 3 3it4_B Arginine biosynthesis b 96.2 0.016 7.1E-07 32.8 7.5 99 250-352 1-123 (205) 4 1vra_B Arginine biosynthesis b 95.0 0.15 6.8E-06 27.1 9.0 101 250-352 1-129 (215) 5 1vz6_A Ornithine acetyl-transf 93.4 0.11 4.7E-06 28.0 5.1 103 245-352 176-302 (393) 6 2v4i_B Glutamate N-acetyltrans 93.4 0.33 1.5E-05 25.2 7.7 96 251-351 2-121 (213) 7 1rm6_A 4-hydroxybenzoyl-COA re 30.1 23 0.001 14.5 3.0 36 330-369 730-765 (769) 8 3dfz_A SIRC, precorrin-2 dehyd 25.9 19 0.00085 15.0 1.2 54 248-303 90-152 (223) 9 3hrd_B Nicotinate dehydrogenas 23.8 30 0.0013 13.8 2.3 31 335-369 298-328 (330) 10 1vlb_A Aldehyde oxidoreductase 20.9 35 0.0015 13.5 2.1 34 331-368 874-907 (907) 11 1n62_B Carbon monoxide dehydro 20.7 35 0.0016 13.5 2.0 44 325-369 762-805 (809) No 1 >1b65_A DMPA, protein (aminopeptidase); hydrolase, peptide degradation, NTN hydrolase; 1.82A {Ochrobactrum anthropi} SCOP: d.154.1.1 Probab=100.00 E-value=0 Score=780.28 Aligned_cols=358 Identities=43% Similarity=0.707 Sum_probs=326.5 Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCCEECCCCCCCCCCCC Q ss_conf 842001521588988874524557625334575276544445677434653688748-8744464320122678765444 Q T0587 2 PRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPL-GKTSLDGVAAGRAVINGTGEWT 80 (373) Q Consensus 2 pRaR~lgi~~~~~pG~~N~ITDV~GV~VGh~t~~~gd~~l~~~~~~~~TGvTvIlP~-g~~~~~~v~ag~~~~~Gt~e~~ 80 (373) ||+|||||+|+++|||+|+|||||||+|||+|++++++ ++..|++++||||||||+ ++++.+||++|++++|||++++ T Consensus 10 ~r~r~lgi~~~~~pGp~N~ITDV~Gv~VGH~T~~~g~~-~~~~~~~~~TGvTVIlp~~ga~~~~~v~gg~p~~~gt~~l~ 88 (375) T 1b65_A 10 PRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEP-RPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 88 (375) T ss_dssp CCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSC-CTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC T ss_pred CCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCC T ss_conf 55886199878887999840247985661206546875-54679987720699971898756775033022578876778 Q ss_pred CHHHHHHHCCCCCCEEEECCCHHHHHHHH-HHHHHHHCCCCCCCC--CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH Q ss_conf 10278762001154656652248899999-999999818786767--711004014200343885566788899999998 Q T0587 81 GMHLVDEVGQFLGPIALTGTGNVGLVHQS-MMDWSVGKVPEEALF--SRLLPVVAETLDNRLNDVFGHGLTRDHVFAALD 157 (373) Q Consensus 81 ~l~~v~e~g~~~~aIvLTggsa~Glaa~g-v~~~l~~~~~g~~~~--~~~vPIVa~~~Dl~lnd~~~~~~~~~~~~~A~~ 157 (373) +++|++|++.+++||+|||||+|||++++ +|+||++++.++... .+++|||++|||+++||++.++|+++|+|+|++ T Consensus 89 ~~~~v~e~~~~v~aIvLtGgSafGLaa~~gv~~~l~~~~~g~~~~~~~~~ipvva~~~D~~~~d~~~~~p~~~~~~~A~~ 168 (375) T 1b65_A 89 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 168 (375) T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH T ss_pred CHHHHCCCCCEECCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH T ss_conf 31331546750103898587237678789999999866888777886402464589980778885678773999999999 Q ss_pred HCCCCCHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCHHHHH Q ss_conf 40587500165421100001004788420468872178517999998735676566521670022330433565001210 Q T0587 158 GAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVA 237 (373) Q Consensus 158 ~A~~~~v~eG~vGAGtGa~~g~~KGGiGsAS~~v~~g~~~~tVgaLV~~N~G~~~d~~~~g~p~G~~~~~~~~~~~~~~~ 237 (373) +|++++|+||||||||||+||+||||+||||++++.+.++|||||||++||+...++++.++++|+++....+. T Consensus 169 ~A~~~~v~~G~vGAGtGa~~g~~KGGiGsaS~~~~~~~~~~tVgaLV~vN~gg~~~~~~~g~~~g~~~~~~~~~------ 242 (375) T 1b65_A 169 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQ------ 242 (375) T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHH------ T ss_pred HHHCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCC------ T ss_conf 75238866777662333552478878772026887379858999999752678644660880202233336877------ Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCC Q ss_conf 13445666567858999965687898999999986402411014778778763799863377566764322200121125 Q T0587 238 AGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTD 317 (373) Q Consensus 238 ~~~~~~~~~~~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~ 317 (373) ...+.+||||+||||||||+|+||||||+||||||||+|+|.|++|||++|||||++..++..+......++.++ T Consensus 243 -----~~~~~~nTtI~VVATdA~L~k~ql~RlA~~AhdGlARai~P~ht~DGD~vfa~STg~~~~~~~~~~~~~~~~~~~ 317 (375) T 1b65_A 243 -----SQLQERGSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVN 317 (375) T ss_dssp -----HHC----CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEEC T ss_pred -----CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCC T ss_conf -----566789988999995981898998889877402244006777789858799985688777766665432300147 Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCEEEECCHHHHHHHHHHHCCC Q ss_conf 12314899999999999999887514642079--88672008989999999974379 Q T0587 318 SETMNALFRGVVQATEEALVNQLVASETMTGA--NNAKVYGIPHDQLARIMKARFPR 372 (373) Q Consensus 318 ~~~l~~lf~AaaeaveeAIlnal~~A~~~~G~--~g~~~~alp~~~~~~~~~~~~~r 372 (373) +..||+||+|++|+|||||+|||++||+|+|+ +++++++||+|+|+++|+| |+| T Consensus 318 ~~~l~~lf~Aaaea~eeAI~nav~~A~t~~G~~~~~~~~~alp~~~~~~~l~~-~~~ 373 (375) T 1b65_A 318 DEPLDTVYLAAVDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQ-YGR 373 (375) T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHH-TTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHH-HCC T ss_conf 03342999999999999999999855776577999877137999999999998-566 No 2 >2drh_A PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=0 Score=756.68 Aligned_cols=354 Identities=41% Similarity=0.633 Sum_probs=324.3 Q ss_pred CCEECCCCCC-CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCCEECCCCCCCCCCCC Q ss_conf 4200152158-8988874524557625334575276544445677434653688748-8744464320122678765444 Q T0587 3 RARDLGVPFE-GTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPL-GKTSLDGVAAGRAVINGTGEWT 80 (373) Q Consensus 3 RaR~lgi~~~-~~pG~~N~ITDV~GV~VGh~t~~~gd~~l~~~~~~~~TGvTvIlP~-g~~~~~~v~ag~~~~~Gt~e~~ 80 (373) |+||||++++ ++|||+|+|||||||+|||+|++++++++..++++++||||||||+ |+++.+|||+|++++||..+.+ T Consensus 2 r~r~lg~~~g~~~pGp~N~ITDV~Gv~VGhat~~~g~~~~~~~~~~~~TGvTVIlp~~ga~~~vdVrgGap~~nGgtreT 81 (361) T 2drh_A 2 KAQELGIKIGVFKPGKRNKITDVKGVKVGHVTLIKGKGKLIPGKGPVRTGVTAILPHEGNIYKEKVLAGAFVMNGYSKPV 81 (361) T ss_dssp CSGGGTCCCSSSCCCSSCSGGGSTTCEEEEEEEEECCSSCBTTTBCEEEEEEEEESSSSCTTTEEEEEEEEEEEECSCCB T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCEEECEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCC T ss_conf 62214976378788998821047997773307226886434688877745589953899735676323022258986422 Q ss_pred CHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 10278762001154656652248899999999999818786767-71100401420034388556678889999999840 Q T0587 81 GMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALF-SRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGA 159 (373) Q Consensus 81 ~l~~v~e~g~~~~aIvLTggsa~Glaa~gv~~~l~~~~~g~~~~-~~~vPIVa~~~Dl~lnd~~~~~~~~~~~~~A~~~A 159 (373) .|.+.+++++.++||+|||||+||++++++|+||+|++++++.. .+++|||++|||+++||++.++++++++++|+++| T Consensus 82 dll~p~~~~~~v~aIvLtGGSafG~aa~g~v~~l~~~~~~~~~~~~~v~pvv~~~~d~~l~~~~~~~~~~~~~~~A~~aa 161 (361) T 2drh_A 82 GLIQLWELGTIETPIILTNTLSIGTAVEGLLDYILEENEDIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKRA 161 (361) T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHCTTBTTTBCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHHHC T ss_pred CCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC T ss_conf 44586562671367885277724567889999999867898867763465432257763378666897267789999854 Q ss_pred CCCCHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCC Q ss_conf 58750016542110000100478842046887217851799999873567656652167002233043356500121013 Q T0587 160 KGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAG 239 (373) Q Consensus 160 ~~~~v~eG~vGAGtGa~~g~~KGGiGsAS~~v~~g~~~~tVgaLV~~N~G~~~d~~~~g~p~G~~~~~~~~~~~~~~~~~ 239 (373) + .+|+||||||||||+|++||||+||||++++.+.+.|+|||||++|||...++++++.+++.++.+..+ T Consensus 162 s-~~~~~G~vGAGtGa~~g~~KGG~GsAS~~l~~~~~~~~VgAlV~vN~g~~~~~~~~g~~~g~~~~~~~~--------- 231 (361) T 2drh_A 162 D-EDFEEGAVGAGTGMSAFEFKGGIGSASRIVEIEGKKYTVGALVLSNFGRREDLTIAGVPVGLELKNWPG--------- 231 (361) T ss_dssp B-SSCCCBSSGGGTTCEETTEECEEEEEEEEEESSSCEEEEEEEEEECCCCGGGCCBTTBCHHHHTTTSSC--------- T ss_pred C-CCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCC--------- T ss_conf 6-775565756661136345566665035775037842799999852368865544476255601102576--------- Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCHH Q ss_conf 44566656785899996568789899999998640241101477877876379986337756676432220012112512 Q T0587 240 PDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSE 319 (373) Q Consensus 240 ~~~~~~~~~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~~~ 319 (373) ...+.+||||+||||||||+|+||||||+||||||||+|+|.|++|||++|+|||+++.++.+. ....+..+.+. T Consensus 232 ---~~~~~~NTTI~VVATdA~Ltk~ql~RlA~~AhdGlARai~P~ht~DGD~vfa~STg~~~~~~~~--~~~~~~~l~~~ 306 (361) T 2drh_A 232 ---RGGEGKGSIIMIIATDAPLTGRQLNRVAKRAIVGLARTGGYAYNGSGDIAVAFSTANRIKHYEK--EVIEIKALPDS 306 (361) T ss_dssp ---CC-----CEEEEEEECSCCCHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEEEEEEEEEETTCC--SCEEEEECCGG T ss_pred ---CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCHH T ss_conf ---7788899889999969938999999999986410203066778998684578622676777664--43210112367 Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHCCC Q ss_conf 31489999999999999988751464207988672008989999999974379 Q T0587 320 TMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFPR 372 (373) Q Consensus 320 ~l~~lf~AaaeaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~~~r 372 (373) .||+||+|++|+|||||+|||++||+|+|++||++++||+|+|+|+|+| |.| T Consensus 307 ~l~~l~~Aaa~~v~eAI~~av~aA~~~~G~~g~~~~al~~~~~~~~~~~-~~~ 358 (361) T 2drh_A 307 VISPLFKATAEAVEEAIINSLLEARTMDGRDNHVRYALPKEELLRIMRR-YGR 358 (361) T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSCCCEECGGGCEECCCCHHHHHHHHHH-TTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHH-HCC T ss_conf 7739999999999999999997457762899967406899999999997-186 No 3 >3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B Probab=96.25 E-value=0.016 Score=32.79 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=62.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHCHHH--- Q ss_conf 58999965687898999999986402411014778-77876379986337756676432220012112512314899--- Q T0587 250 SLLIVIATDAPLMPHQLERMARRAALGVGRNGSTA-GALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALF--- 325 (373) Q Consensus 250 TtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~-~~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~~~~l~~lf--- 325 (373) |.++.|.|||++++.+|+++=+.+-+-==-.|..- .++--|+++.||+|......... ..++.-...+..|. T Consensus 1 TML~fi~TDa~i~~~~L~~~L~~~v~~SFN~IsVDGDtSTNDtv~l~A~G~~~~~~~~~----~f~~aL~~v~~~LA~~i 76 (205) T 3it4_B 1 TMLCVLTTDAAAEPAALERALRRAAAATFDRLDIDGSCSTNDTVLLLSSGASEIPPAQA----DLDEAVLRVCDDLCAQL 76 (205) T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTGGGBCSSSCCCSCCEEEEEECCTTCCCCCHH----HHHHHHHHHHHHHHHHH T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHEEEHHHCCCCCCCCCHH----HHHHHHHHHHHHHHHHH T ss_conf 98999997686899999999999987366538876888710232020357877995389----99999999999999988 Q ss_pred --------------------HHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf --------------------999999999999887514642079886 Q T0587 326 --------------------RGVVQATEEALVNQLVASETMTGANNA 352 (373) Q Consensus 326 --------------------~AaaeaveeAIlnal~~A~~~~G~~g~ 352 (373) ..-|+-+.++|.||.|--..+.|.+-+ T Consensus 77 v~DGEGatk~i~v~V~gA~s~~~A~~vA~sIa~S~LVKtAi~G~DpN 123 (205) T 3it4_B 77 QADAEGVTKRVTVTVTGAATEDDALVAARQIARDSLVKTALFGSDPN 123 (205) T ss_dssp HHTCTTCCCEEEEEEEEESSHHHHHHHHHHHHHCHHHHHHHHTTCCC T ss_pred HHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCCCC T ss_conf 76458873599999968977799999999972049999999468998 No 4 >1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} Probab=94.98 E-value=0.15 Score=27.14 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=63.4 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHCHHH--- Q ss_conf 589999656878989999999864024110147787-7876379986337756676432220012112512314899--- Q T0587 250 SLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAG-ALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALF--- 325 (373) Q Consensus 250 TtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~-~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~~~~l~~lf--- 325 (373) |.++.|.|||++++..|+++=+.+-+-==-.|..-+ ++--|+++.||+|......-.... .....+. ..|..+| T Consensus 1 TML~fi~TDa~i~~~~L~~~l~~av~~sFN~IsVDGDtSTNDtv~~~A~G~a~~~~~~~~~-~~~~~f~-~al~~v~~~L 78 (215) T 1vra_B 1 TMLSFVTTDANIDHGHLQGALSAITNETFNRITVDGDTSTNDMVVVMASGLAENETLTPEH-PDWANFY-KALQLACEDL 78 (215) T ss_dssp CCEEEEEECCCCCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEECCTTCCSCCCTTS-TTHHHHH-HHHHHHHHHH T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCHHH-HHHHHHH-HHHHHHHHHH T ss_conf 9899999778689999999999998725662787698885037988640023687310136-7899999-9999999999 Q ss_pred ------------------------HHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf ------------------------999999999999887514642079886 Q T0587 326 ------------------------RGVVQATEEALVNQLVASETMTGANNA 352 (373) Q Consensus 326 ------------------------~AaaeaveeAIlnal~~A~~~~G~~g~ 352 (373) ..-|+.+.++|.||.|--+.+.|.+-+ T Consensus 79 A~~iv~DGEGatk~i~v~V~gA~s~~~A~~ia~~ia~S~LvKtA~~G~DpN 129 (215) T 1vra_B 79 AKQIARDGEGATKLIEVEVTGAANDQEAGMVAKQIVGSDLVKTAIYGADAN 129 (215) T ss_dssp HHHHHHTSTTCSCEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC T ss_pred HHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHCCCC T ss_conf 999873756650589999824897899999999970319999988502886 No 5 >1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A Probab=93.43 E-value=0.11 Score=28.04 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=66.5 Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHCH Q ss_conf 65678589999656878989999999864024110147787-78763799863377566764322200121125123148 Q T0587 245 PQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAG-ALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNA 323 (373) Q Consensus 245 ~~~~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~-~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (373) .|.+.|.++.|.|||++++..|+++-+.+-+-==-.|..-+ ++--|+++.||||........ ...+.+ ...+.. T Consensus 176 ~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~SFN~ItVDGDtSTNDtv~l~AnG~~~~~~~~----~f~~aL-~~v~~~ 250 (393) T 1vz6_A 176 EPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAG----EFEEAL-HTAALA 250 (393) T ss_dssp CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHH----HHHHHH-HHHHHH T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCHH----HHHHHH-HHHHHH T ss_conf 543100078999823567688999999864145000653588887757999954875521088----999999-999999 Q ss_pred HH-----------------------HHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99-----------------------999999999999887514642079886 Q T0587 324 LF-----------------------RGVVQATEEALVNQLVASETMTGANNA 352 (373) Q Consensus 324 lf-----------------------~AaaeaveeAIlnal~~A~~~~G~~g~ 352 (373) |. ..-|+.+.++|.||.|--+.+.|.|-+ T Consensus 251 LA~~Iv~DGEGATK~i~v~V~gA~s~~~A~~iA~sIa~S~LVKTA~~G~DpN 302 (393) T 1vz6_A 251 LVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN 302 (393) T ss_dssp HHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999873654441589999768999999999999975339999887355884 No 6 >2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2vzk_B* Probab=93.37 E-value=0.33 Score=25.16 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=61.9 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHCHHH---- Q ss_conf 8999965687898999999986402411014778-77876379986337756676432220012112512314899---- Q T0587 251 LLIVIATDAPLMPHQLERMARRAALGVGRNGSTA-GALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALF---- 325 (373) Q Consensus 251 tI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~-~~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~~~~l~~lf---- 325 (373) .++.|.|||++++..|+++=+++-+-==-.|..- .++--|+++.||+|....... ......-...+..|. T Consensus 2 ML~fi~TDa~i~~~~l~~~l~~a~~~sFN~IsVDGDtSTNDtv~~~A~g~~~~~~~-----~~f~~al~~v~~~LA~~iv 76 (213) T 2v4i_B 2 LLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDA-----GEFEEALHTAALALVKDIA 76 (213) T ss_dssp CEEEEEECCBCCHHHHHHHHHHHHHHTGGGBCSSSCCCSCCEEEEEEECTTCBCCH-----HHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHH T ss_conf 18999977858999999999999872576288768888633023313334698631-----5678899999999999997 Q ss_pred -------------------HHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf -------------------99999999999988751464207988 Q T0587 326 -------------------RGVVQATEEALVNQLVASETMTGANN 351 (373) Q Consensus 326 -------------------~AaaeaveeAIlnal~~A~~~~G~~g 351 (373) ..-|+.+.++|.||.|--+.+.|.+- T Consensus 77 ~DGEGatk~i~v~V~gA~s~~~A~~ia~~ia~S~LvKtA~~G~Dp 121 (213) T 2v4i_B 77 SDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDP 121 (213) T ss_dssp HSSTTCCCEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCC T ss_pred HCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 273223427999996489989999999986101999998850165 No 7 >1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A* Probab=30.11 E-value=23 Score=14.52 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 9999999988751464207988672008989999999974 Q T0587 330 QATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 330 eaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) -.+--||.||+..|. |..=+..|.-| |++.+.|+.+ T Consensus 730 ~~~~~AianAi~~At---G~r~~~lP~tp-e~i~~al~~~ 765 (769) T 1rm6_A 730 AGFLPAIHEAVYEAV---GVRATDFPLSP-DRITELLDAK 765 (769) T ss_dssp TTHHHHHHHHHHHHH---SCCCCEESCCH-HHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH---CCCCCCCCCCH-HHHHHHHHHH T ss_conf 438999999999847---97757689899-9999999866 No 8 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} Probab=25.86 E-value=19 Score=15.01 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=33.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEC-CCC--------CCCCCCCEEEEEECCCCCCC Q ss_conf 785899996568789899999998640241101-477--------87787637998633775667 Q T0587 248 KNSLLIVIATDAPLMPHQLERMARRAALGVGRN-GST--------AGALSGEFALAFSTSHVIPL 303 (373) Q Consensus 248 ~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~-~~~--------~~~~dGD~vfA~STg~~~~~ 303 (373) .+-.|++.|||-+-...++.+.|+. ..+--. -.| ..--.|++.+|+||+...|. T Consensus 90 ~~~~lViaAT~d~~lN~~i~~~a~~--~~lvNv~d~p~~~df~~Paiv~rg~l~iaIST~G~sP~ 152 (223) T 3dfz_A 90 LNVFFIVVATNDQAVNKFVKQHIKN--DQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPL 152 (223) T ss_dssp SSCSEEEECCCCTHHHHHHHHHSCT--TCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHH--CCCCEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCH T ss_conf 8960999778988999999999876--68824679855581587689972885899733899959 No 9 >3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Probab=23.83 E-value=30 Score=13.85 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=17.8 Q ss_pred HHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 99988751464207988672008989999999974 Q T0587 335 ALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 335 AIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) ||.||+..|. |..=+..|.-| +++.+.|+++ T Consensus 298 AianAI~~A~---G~r~~~lP~tp-e~v~~al~~~ 328 (330) T 3hrd_B 298 AVVAAIEDAL---GTRFTHTPIMP-KDIVAAVKAQ 328 (330) T ss_dssp HHHHHHHHHH---TSCCCBSCCCH-HHHHHHHHHH T ss_pred HHHHHHHHHH---CCCCCCCCCCH-HHHHHHHHHH T ss_conf 9999999976---97716589999-9999999960 No 10 >1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* Probab=20.86 E-value=35 Score=13.49 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHH Q ss_conf 99999998875146420798867200898999999997 Q T0587 331 ATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKA 368 (373) Q Consensus 331 aveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~ 368 (373) .+--||.||+..| +|..=+..|.-| |++.+.|++ T Consensus 874 ~~~pAI~nAI~~A---~G~r~~~lP~tp-erI~~al~a 907 (907) T 1vlb_A 874 SPHAAIINAIKSA---TGVRIYRLPAYP-EKVLEALKA 907 (907) T ss_dssp SHHHHHHHHHHHH---HSCCCCBSCCCH-HHHHHHHHC T ss_pred HHHHHHHHHHHHH---HCCCCCCCCCCH-HHHHHHHCC T ss_conf 4899999999971---498658779999-999998578 No 11 >1n62_B Carbon monoxide dehydrogenase large chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B* Probab=20.71 E-value=35 Score=13.47 Aligned_cols=44 Identities=7% Similarity=-0.100 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 999999999999988751464207988672008989999999974 Q T0587 325 FRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 325 f~AaaeaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) .+...-.+-=||.||+..|..-.|..=+..|.- .|++.+.|+.. T Consensus 762 GE~~~~~~~~Ai~NAI~~A~~~~G~r~~~lP~t-perv~~~~~~~ 805 (809) T 1n62_B 762 GESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHD-AWRLWKVGEQL 805 (809) T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTCCCCCSCCC-HHHHHHHHHHT T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHC T ss_conf 154204379999999999998549974658989-99999999974 Done!