Query T0587 3NDV, , 373 residues Match_columns 373 No_of_seqs 159 out of 465 Neff 5.3 Searched_HMMs 15564 Date Sun Jun 13 15:27:44 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0587.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0587.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1b65a_ d.154.1.1 (A:) L-amino 100.0 0 0 812.7 30.7 358 2-372 2-365 (367) 2 d1b65a_ d.154.1.1 (A:) L-amino 100.0 0 0 809.9 31.2 358 2-372 2-365 (367) 3 d1vz6a_ d.154.1.2 (A:) Glutama 94.6 0.054 3.5E-06 28.8 6.4 103 245-352 169-295 (383) 4 d1t3qb2 d.133.1.1 (B:166-786) 29.9 16 0.001 14.5 2.6 44 325-369 577-620 (621) 5 d1n62b2 d.133.1.1 (B:147-809) 25.9 19 0.0012 14.1 2.0 45 324-369 615-659 (663) 6 d1vlba4 d.133.1.1 (A:311-907) 25.6 19 0.0012 14.0 2.1 34 331-368 564-597 (597) 7 d1rm6a2 d.133.1.1 (A:134-769) 24.7 20 0.0013 13.9 3.0 35 331-369 598-632 (636) 8 d1ffvb2 d.133.1.1 (B:147-803) 20.6 24 0.0016 13.5 2.5 45 325-370 610-654 (657) 9 d1n62b2 d.133.1.1 (B:147-809) 16.2 31 0.002 12.9 2.0 44 325-369 616-659 (663) 10 d1pjqa3 e.37.1.1 (A:114-215) S 11.0 44 0.0028 12.0 1.7 17 287-303 5-21 (102) No 1 >d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} Probab=100.00 E-value=0 Score=812.71 Aligned_cols=358 Identities=43% Similarity=0.706 Sum_probs=330.9 Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCCEECCCCCCCCCCCC Q ss_conf 842001521588988874524557625334575276544445677434653688748-8744464320122678765444 Q T0587 2 PRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPL-GKTSLDGVAAGRAVINGTGEWT 80 (373) Q Consensus 2 pRaR~lgi~~~~~pG~~N~ITDV~GV~VGh~t~~~gd~~l~~~~~~~~TGvTvIlP~-g~~~~~~v~ag~~~~~Gt~e~~ 80 (373) ||+|||||+|+++|||+|+|||||||+|||+|++++|+.+ .+|.+++||||||||+ |+++.+||+++++++||+++++ T Consensus 2 ~r~r~lgi~~g~~pGp~N~ITDV~GV~VGH~t~~~g~~~~-~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~ 80 (367) T d1b65a_ 2 PRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRP-GRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 80 (367) T ss_dssp CCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSCCT-TCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCC T ss_conf 8600256014888888756234576366665540555444-578732143279985888722663245532227887776 Q ss_pred CHHHHHHHCCCCCCEEEECCCHHHHH-HHHHHHHHHHCCCCCCCC--CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH Q ss_conf 10278762001154656652248899-999999999818786767--711004014200343885566788899999998 Q T0587 81 GMHLVDEVGQFLGPIALTGTGNVGLV-HQSMMDWSVGKVPEEALF--SRLLPVVAETLDNRLNDVFGHGLTRDHVFAALD 157 (373) Q Consensus 81 ~l~~v~e~g~~~~aIvLTggsa~Gla-a~gv~~~l~~~~~g~~~~--~~~vPIVa~~~Dl~lnd~~~~~~~~~~~~~A~~ 157 (373) +++|++|++++++||+|||||+|||+ ++++|+||++++.++... .+++|||+||||+++||+|++||+++|+++|++ T Consensus 81 ~~~~v~e~g~~~~aIvLtggsa~Gl~a~~~v~~~l~~~~~g~~~~~~~~~ipvVa~~~Dl~lnd~~~~~~~~~~~~~A~~ 160 (367) T d1b65a_ 81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 160 (367) T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 36675230210142666632328888889999999836887647886699864435530223774678866899999998 Q ss_pred HCCCCCHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCHHHHH Q ss_conf 40587500165421100001004788420468872178517999998735676566521670022330433565001210 Q T0587 158 GAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVA 237 (373) Q Consensus 158 ~A~~~~v~eG~vGAGtGa~~g~~KGGiGsAS~~v~~g~~~~tVgaLV~~N~G~~~d~~~~g~p~G~~~~~~~~~~~~~~~ 237 (373) +|++++|+||||||||||+||+||||||||||+++.+.++|||||||++|||...+++++|+|+|+++....+. T Consensus 161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGsASr~~~~~~~~~tVGaLv~~N~g~~~~~~~~g~p~g~~~~~~~~~------ 234 (367) T d1b65a_ 161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQ------ 234 (367) T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHH------ T ss_pred HCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCC------ T ss_conf 40787555666531102066145676212578886258857999999644788745566870101331455777------ Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCC Q ss_conf 13445666567858999965687898999999986402411014778778763799863377566764322200121125 Q T0587 238 AGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTD 317 (373) Q Consensus 238 ~~~~~~~~~~~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~ 317 (373) ...+.+||||+||||||||+|+||||||+|||+||||+|+|.|++|||++|||||+++.++..+......++.++ T Consensus 235 -----~~~~~~nTtI~VVATDA~L~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~ 309 (367) T d1b65a_ 235 -----SQLQERGSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVN 309 (367) T ss_dssp -----HHC----CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEEC T ss_pred -----CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCC T ss_conf -----677778738999965788898999999997421001021255248864699984078776764332100132215 Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCEEEECCHHHHHHHHHHHCCC Q ss_conf 12314899999999999999887514642079--88672008989999999974379 Q T0587 318 SETMNALFRGVVQATEEALVNQLVASETMTGA--NNAKVYGIPHDQLARIMKARFPR 372 (373) Q Consensus 318 ~~~l~~lf~AaaeaveeAIlnal~~A~~~~G~--~g~~~~alp~~~~~~~~~~~~~r 372 (373) ++.||+||+|++|+|||||+|||++||+|+|+ +|+++++||+|+|+|+|+| |+| T Consensus 310 ~~~l~~l~~AaaeaveeAI~nal~aA~~~~G~~~~g~~~~alp~~~~~~~~~~-~~~ 365 (367) T d1b65a_ 310 DEPLDTVYLAAVDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQ-YGR 365 (367) T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHH-TTC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHH-HCC T ss_conf 10017789999999999998776405642451588866123898999999997-077 No 2 >d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} Probab=100.00 E-value=0 Score=809.91 Aligned_cols=358 Identities=44% Similarity=0.738 Sum_probs=332.1 Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCCEECCCCCCCCCCCC Q ss_conf 842001521588988874524557625334575276544445677434653688748-8744464320122678765444 Q T0587 2 PRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPL-GKTSLDGVAAGRAVINGTGEWT 80 (373) Q Consensus 2 pRaR~lgi~~~~~pG~~N~ITDV~GV~VGh~t~~~gd~~l~~~~~~~~TGvTvIlP~-g~~~~~~v~ag~~~~~Gt~e~~ 80 (373) ||+|||||+|+++|||+|+|||||||+|||+|++++| +++.++++++||||||||+ |+++.+||+++++++||+++++ T Consensus 2 ~r~R~lGi~~~~~pGp~N~ITDV~GV~VGH~T~~~g~-~~~~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~ 80 (367) T d1b65a_ 2 PRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENE-PRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 80 (367) T ss_dssp CCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSS-CCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC T ss_pred CCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCC-CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC T ss_conf 7567539887888799875014798566223644687-654679986711799971899756786055561368876678 Q ss_pred CHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCC-CCCC--CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH Q ss_conf 1027876200115465665224889999999999981878-6767--711004014200343885566788899999998 Q T0587 81 GMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPE-EALF--SRLLPVVAETLDNRLNDVFGHGLTRDHVFAALD 157 (373) Q Consensus 81 ~l~~v~e~g~~~~aIvLTggsa~Glaa~gv~~~l~~~~~g-~~~~--~~~vPIVa~~~Dl~lnd~~~~~~~~~~~~~A~~ 157 (373) +++|++|++.+++||+|||||+|||+++++|+|++++... +... .+++|||+||||+++||++.+||+++|+|+|++ T Consensus 81 ~~~~v~e~g~~~~aIvLTggsa~Glaa~~~v~~~l~~~~~g~~~~~~~~vvPiV~~~~D~~l~d~~~~~~~~~~~~~A~~ 160 (367) T d1b65a_ 81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 160 (367) T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH T ss_pred CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 05653547753677987567248888789999999856888777885210451279980677876678988999999999 Q ss_pred HCCCCCHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCHHHHH Q ss_conf 40587500165421100001004788420468872178517999998735676566521670022330433565001210 Q T0587 158 GAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVA 237 (373) Q Consensus 158 ~A~~~~v~eG~vGAGtGa~~g~~KGGiGsAS~~v~~g~~~~tVgaLV~~N~G~~~d~~~~g~p~G~~~~~~~~~~~~~~~ 237 (373) +|++++|+||||||||||+||+||||||||||+++.+.+.|||||||++|||...++++.|+|+|+++....+. T Consensus 161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGtASr~~~~~~~~~tVGaLV~~N~g~~~~~~~~g~p~g~~l~~~~~~------ 234 (367) T d1b65a_ 161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQ------ 234 (367) T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHH------ T ss_pred HHHCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCC------ T ss_conf 75228877887573211321356787521267887178835999999744788500240775200131445777------ Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCC Q ss_conf 13445666567858999965687898999999986402411014778778763799863377566764322200121125 Q T0587 238 AGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTD 317 (373) Q Consensus 238 ~~~~~~~~~~~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~ 317 (373) ...+.+||||+||||||||+|+||||||+|||+||||+|+|.|++|||++|||||+++.++..+......++.++ T Consensus 235 -----~~~~~~nTtI~VVATDApL~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~ 309 (367) T d1b65a_ 235 -----SQLQERGSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVN 309 (367) T ss_dssp -----HHC----CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEEC T ss_pred -----CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf -----777889988999995981899999999998653153126777799847799940578677665565544410047 Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCEEEECCHHHHHHHHHHHCCC Q ss_conf 12314899999999999999887514642079--88672008989999999974379 Q T0587 318 SETMNALFRGVVQATEEALVNQLVASETMTGA--NNAKVYGIPHDQLARIMKARFPR 372 (373) Q Consensus 318 ~~~l~~lf~AaaeaveeAIlnal~~A~~~~G~--~g~~~~alp~~~~~~~~~~~~~r 372 (373) +..||+||+|++|+|||||+|||++||+|+|+ +++++++||+|+|+++|++ |+| T Consensus 310 ~~~l~~lf~Aaaea~eeAI~nal~~A~t~~G~~~~~~~~~alp~d~~~~~~~~-~~~ 365 (367) T d1b65a_ 310 DEPLDTVYLAAVDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQ-YGR 365 (367) T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHH-TTC T ss_pred CCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHH-HCC T ss_conf 20008899999999999999999746776575899877417999999999998-466 No 3 >d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} Probab=94.64 E-value=0.054 Score=28.82 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=66.1 Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHCH Q ss_conf 65678589999656878989999999864024110147787-78763799863377566764322200121125123148 Q T0587 245 PQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAG-ALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNA 323 (373) Q Consensus 245 ~~~~nTtI~VVATDApL~~~Ql~RlA~~A~~GlAR~~~~~~-~~dGD~vfA~STg~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (373) .|.+-|.+..|.|||++++.+|+++-+.+-+-==-.|..-+ ++--|+++.|++|........ ...+.+. ..... T Consensus 169 ~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~~~~~----~f~~aL~-~v~~~ 243 (383) T d1vz6a_ 169 EPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAG----EFEEALH-TAALA 243 (383) T ss_dssp CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHH----HHHHHHH-HHHHH T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHH----HHHHHHH-HHHHH T ss_conf 555452478999615567688999999864145000654588887758999845875321078----7777788-99999 Q ss_pred HH-----------------------HHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99-----------------------999999999999887514642079886 Q T0587 324 LF-----------------------RGVVQATEEALVNQLVASETMTGANNA 352 (373) Q Consensus 324 lf-----------------------~AaaeaveeAIlnal~~A~~~~G~~g~ 352 (373) |. ..-|+.+.++|.||.|--+.+.|.|-+ T Consensus 244 LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpN 295 (383) T d1vz6a_ 244 LVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPN 295 (383) T ss_dssp HHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCC T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999863653322589999805899999999999975229999887345884 No 4 >d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]} Probab=29.88 E-value=16 Score=14.50 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 999999999999988751464207988672008989999999974 Q T0587 325 FRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 325 f~AaaeaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) .+...-.+--||.||+..|.--.|..=+..|.-| |++.+.|+.+ T Consensus 577 GE~~~~~~~~AI~nAi~~A~g~~~~r~~~lP~tp-e~v~~al~~~ 620 (621) T d1t3qb2 577 GESAMISAPAAVVAAVNDALAHLEVVIETVPITP-ERIFRSIQER 620 (621) T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGTCCCCEESCCH-HHHHHHHHTC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHC T ss_conf 5754023799999999997577688316889899-9999997438 No 5 >d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Probab=25.86 E-value=19 Score=14.08 Aligned_cols=45 Identities=7% Similarity=-0.085 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 9999999999999988751464207988672008989999999974 Q T0587 324 LFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 324 lf~AaaeaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) +.+...-.+-=||.||+..|..-.|..=+..|.- .++|.++|++. T Consensus 615 vGE~~~~~~~~Ai~nAI~~A~~~~G~r~~~lP~t-pe~v~~~~~~~ 659 (663) T d1n62b2 615 VGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHD-AWRLWKVGEQL 659 (663) T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTCCCCCSCCC-HHHHHHHHHHT T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHC T ss_conf 3364304469999999999998349965669999-99999999974 No 6 >d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]} Probab=25.61 E-value=19 Score=14.05 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHH Q ss_conf 99999998875146420798867200898999999997 Q T0587 331 ATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKA 368 (373) Q Consensus 331 aveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~ 368 (373) .+-=||.||+..| +|..=+..|. ..|++.+.|++ T Consensus 564 ~~~~AI~nAi~~A---~G~r~~~lP~-tpe~v~~al~a 597 (597) T d1vlba4 564 SPHAAIINAIKSA---TGVRIYRLPA-YPEKVLEALKA 597 (597) T ss_dssp SHHHHHHHHHHHH---HSCCCCBSCC-CHHHHHHHHHC T ss_pred CHHHHHHHHHHHH---HCCCCCCCCC-CHHHHHHHHCC T ss_conf 0899999999982---7985687898-99999998569 No 7 >d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]} Probab=24.70 E-value=20 Score=13.95 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 999999988751464207988672008989999999974 Q T0587 331 ATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 331 aveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) .+--||.||+..|. |..-+..|.-| |++.+.|+.. T Consensus 598 ~~~~Ai~nAI~~A~---G~r~~~lP~tp-e~v~~al~~~ 632 (636) T d1rm6a2 598 GFLPAIHEAVYEAV---GVRATDFPLSP-DRITELLDAK 632 (636) T ss_dssp THHHHHHHHHHHHH---SCCCCEESCCH-HHHHHHHHHH T ss_pred CHHHHHHHHHHHHH---CCCCCCCCCCH-HHHHHHHHHH T ss_conf 47999999999857---97757689899-9999999865 No 8 >d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]} Probab=20.62 E-value=24 Score=13.46 Aligned_cols=45 Identities=7% Similarity=0.013 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHC Q ss_conf 9999999999999887514642079886720089899999999743 Q T0587 325 FRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARF 370 (373) Q Consensus 325 f~AaaeaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~~ 370 (373) .+...-.+-=||.||+..|-.-+|..=+..|.-| |++.+.|+... T Consensus 610 GE~~~~~~~~Ai~nAI~~A~~~tG~r~~~lP~Tp-e~v~~al~~~~ 654 (657) T d1ffvb2 610 AESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTS-YRVWKSLKEHN 654 (657) T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGTCCCCCSCCCH-HHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHC T ss_conf 3754021699999999999983198427799999-99999998627 No 9 >d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} SCOP: d1zxib2 d1ffvb2 d1t3qb2 Probab=16.19 E-value=31 Score=12.86 Aligned_cols=44 Identities=7% Similarity=-0.092 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 999999999999988751464207988672008989999999974 Q T0587 325 FRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKAR 369 (373) Q Consensus 325 f~AaaeaveeAIlnal~~A~~~~G~~g~~~~alp~~~~~~~~~~~ 369 (373) .+...-.+-=||.||+..|..-+|..=+..|.-| +++.+.|++. T Consensus 616 GE~~~~~~~~AI~nAi~~A~~~~Gvr~~~lP~tP-e~i~~al~~~ 659 (663) T d1n62b2 616 GESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDA-WRLWKVGEQL 659 (663) T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTCCCCCSCCCH-HHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCH-HHHHHHHHHC T ss_conf 5013324789999999999986398011168898-9999999963 No 10 >d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]} Probab=11.03 E-value=44 Score=11.98 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.2 Q ss_pred CCCCEEEEEECCCCCCC Q ss_conf 87637998633775667 Q T0587 287 LSGEFALAFSTSHVIPL 303 (373) Q Consensus 287 ~dGD~vfA~STg~~~~~ 303 (373) -.||+++|+||+...|. T Consensus 5 ~rg~l~iAISTgG~sP~ 21 (102) T d1pjqa3 5 DRSPLMVAVSSGGTSPV 21 (102) T ss_dssp EETTEEEEEECTTSCHH T ss_pred ECCCEEEEEECCCCCHH T ss_conf 54885798758996859 Done!