Query T0588 ZP_02064699.1, Bacteroides ovatus ATCC 8483, 400 residues Match_columns 400 No_of_seqs 167 out of 251 Neff 7.4 Searched_HMMs 22458 Date Mon Jul 5 09:04:55 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0588.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0588.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1qaz_A Protein (alginate lyase 100.0 0 0 310.8 27.1 277 73-371 41-322 (351) 2 3a0o_A Oligo alginate lyase; a 99.9 4.7E-20 2.1E-24 144.8 28.1 304 20-383 137-450 (776) 3 3e7j_A Heparinase II protein; 99.8 1E-18 4.5E-23 136.3 18.8 284 20-378 23-312 (749) 4 2ahf_A Unsaturated glucuronyl 94.7 0.17 7.6E-06 26.6 17.3 181 129-342 51-260 (377) 5 1rwh_A Chondroitin AC lyase; c 94.7 0.18 7.8E-06 26.6 23.0 244 28-336 5-277 (757) 6 1x1i_A Xanthan lyase; alpha/al 93.4 0.31 1.4E-05 25.0 23.9 246 30-339 2-272 (752) 7 2wda_A PL8, putative secreted 92.4 0.43 1.9E-05 24.1 24.7 244 28-336 23-288 (765) 8 2h6f_B Protein farnesyltransfe 89.2 0.86 3.8E-05 22.2 9.7 189 106-338 87-280 (437) 9 2zzr_A Unsaturated glucuronyl 89.0 0.89 4E-05 22.1 13.2 179 129-340 77-283 (397) 10 3gt5_A N-acylglucosamine 2-epi 88.6 0.94 4.2E-05 21.9 22.6 50 97-150 33-82 (402) 11 1f1s_A Hyaluronate lyase; the 86.1 1.3 5.8E-05 21.0 19.2 249 27-336 77-353 (814) 12 2v8i_A Pectate lyase; periplas 85.5 1.4 6.2E-05 20.8 7.0 50 99-155 43-92 (543) 13 3k11_A Putative glycosyl hydro 83.4 1.7 7.7E-05 20.2 11.6 203 128-346 90-313 (445) 14 2q1f_A Chondroitinase; alpha p 81.9 2 8.7E-05 19.9 12.1 195 118-339 290-502 (1022) 15 2gz6_A N-acetyl-D-glucosamine 81.8 2 8.8E-05 19.8 21.4 51 101-156 39-93 (388) 16 1fp3_A N-acyl-D-glucosamine 2- 77.1 2.8 0.00012 18.9 14.7 32 119-150 121-152 (402) 17 1x9d_A Endoplasmic reticulum m 74.4 3.3 0.00014 18.5 5.5 33 118-150 167-199 (538) 18 1hcu_A Alpha-1,2-mannosidase; 74.0 3.1 0.00014 18.6 4.0 128 133-265 189-333 (503) 19 1w6k_A Lanosterol synthase; cy 71.1 3.9 0.00017 18.0 12.0 124 213-353 556-694 (732) 20 1cb8_A Protein (chondroitinase 68.0 4.5 0.0002 17.6 15.6 176 123-336 60-247 (678) 21 1dl2_A Class I alpha-1,2-manno 61.6 6 0.00027 16.8 3.4 25 127-151 180-204 (511) 22 1nc5_A Hypothetical protein YT 59.8 6.4 0.00028 16.6 21.4 25 129-153 50-74 (373) 23 3dss_B Geranylgeranyl transfer 59.4 6.5 0.00029 16.6 9.0 12 26-37 18-29 (331) 24 1nxc_A Mannosyl-oligosaccharid 51.1 8.9 0.00039 15.7 4.0 30 119-148 104-133 (478) 25 1aa0_A Fibritin, gpwac E; coil 50.6 4.1 0.00018 17.9 1.1 12 95-106 94-105 (113) 26 2ri9_A Mannosyl-oligosaccharid 49.1 9.5 0.00042 15.5 4.1 25 128-152 170-194 (475) 27 1n7o_A Hyaluronidase; protein 46.0 11 0.00047 15.2 20.6 190 116-336 66-274 (721) 28 2sqc_A Squalene-hopene cyclase 33.6 17 0.00074 14.0 10.4 25 327-352 573-597 (631) 29 1ut9_A Cellulose 1,4-beta-cell 33.0 17 0.00075 13.9 9.9 17 128-144 296-314 (609) 30 1r76_A Pectate lyase; A-helica 29.5 19 0.00086 13.6 6.2 100 122-229 151-259 (408) 31 1gxm_A Pectate lyase; mechanis 27.7 21 0.00093 13.3 12.8 131 127-267 81-241 (332) 32 1avy_A Fibritin, gpwac M; coil 27.3 21 0.00094 13.3 5.0 12 95-106 52-63 (74) No 1 >1qaz_A Protein (alginate lyase A1-III); crystals,; 1.78A {Sphingomonas SP} SCOP: a.102.3.1 PDB: 1hv6_A 3ew4_A* 3evh_A 3evl_A* Probab=100.00 E-value=0 Score=310.82 Aligned_cols=277 Identities=17% Similarity=0.212 Sum_probs=219.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 77776555342564447888888776621468851776553342889999999999888886058888999999999987 Q T0588 73 ADSGDKHDYMSMGPYWWPDPSKPDGLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVW 152 (400) Q Consensus 73 ~~sg~~hdy~s~~py~wP~~~~~~g~py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW 152 (400) +..-++.....+.|| ..+-. -+..|++.|+.+...+....++.+..++..|.+|+++|.+|||++||++|+++|++| T Consensus 41 ~~~~~~~~~a~p~P~--~~~l~-~~sky~~~d~~~~~~~~~~~~~~~~~~~~~~~~La~aY~~TGd~~YA~~Ai~~L~aW 117 (351) T 1qaz_A 41 PKEYDCTTEATPNPQ--QGEMV-IPRRYLSGNHGPVNPDYEPVVTLYRDFEKISATLGNLYVATGKPVYATCLLNMLDKW 117 (351) T ss_dssp CCCCCGGGCCCCCCC--CSSCC-CCCSBSSTTSSSBCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 055554324799986--57666-656036888777887730688887679999999999997618899999999999999 Q ss_pred HCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 40531001455210013677777665413689898999999999999832798887899999999999999872313655 Q T0588 153 FLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAE 232 (400) Q Consensus 153 ~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~ 232 (400) |.+.++ .+..+ +....+..++.++.++.|+++|+.+++|++++.++|++||..++.|+.++..+.. T Consensus 118 A~a~Al------------~~~~~--~~~~~~~~~~~l~~~a~A~e~l~~~~~~~~~d~~~i~~Wf~~~~~~~~~~~~~~~ 183 (351) T 1qaz_A 118 AKADAL------------LNYDP--KSQSWYQVEWSAATAAFALSTMMAEPNVDTAQRERVVKWLNRVARHQTSFPGGDT 183 (351) T ss_dssp HHTTTT------------SSSCT--TSHHHHHHHHHHHHHHHHHHTTTTCSSSCHHHHHHHHHHHHHHHHHHHTSCCCTT T ss_pred HHCCCC------------CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 857873------------47789--9833888888799999999998407899989999999999999999623645654 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC-CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 344334310799999998888608999999999998762100222010120456404-5763035665999999999998 Q T0588 233 EQRAKNNHGLAYDVQLTAYALYTGNQDLAMKTIQEFPEKRLFAQIEPDGKQPLELAR-TTALGYTIFNLGHMLDMCSIAS 311 (400) Q Consensus 233 ~~~~~nNhg~~~~~~~~aia~~~~d~~l~~~ai~~~~~~~l~~~i~~dG~q~~E~~R-~~~~~Y~~~~L~~l~~~a~~a~ 311 (400) + ..|||++|...+++++|+|+||+++++.++++|+.. ..||.+||++|.|+.| ++++||+.|+|.+|+.+|++++ T Consensus 184 ~--~~nNh~~w~~~~~~aigv~~~d~~l~~~a~~~~k~~--l~~~~~DG~~p~E~~Rg~~a~~Y~~~~l~~l~~ia~~a~ 259 (351) T 1qaz_A 184 S--CCNNHSYWRGQEATIIGVISKDDELFRWGLGRYVQA--MGLINEDGSFVHEMTRHEQSLHYQNYAMLPLTMIAETAS 259 (351) T ss_dssp T--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTBCTTSCBTTGGGSGGGHHHHHHHHHHHHHHHHHHHH T ss_pred C--CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 3--437899999999999999919999999999999999--960478898827876157784318999999999999999 Q ss_pred HCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHH Q ss_conf 52832221346255479999999998636788656722244----4555415788999999851 Q T0588 312 TLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQQIK----EWDKKQEEACWILRRASFF 371 (400) Q Consensus 312 ~~G~DL~~~~~~~g~~L~~a~ey~~~y~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~aa~~ 371 (400) +||+|||+|+ .+|.+|.++++|+++++.+|+..+||.... .+...+....|+.....+. T Consensus 260 ~~G~DL~~y~-~ng~~l~~a~~f~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~W~~~y~~r~ 322 (351) T 1qaz_A 260 RQGIDLYAYK-ENGRDIHSARKFVFAAVKNPDLIKKYASEPQDTRAFKPGRGDLNWIEYQRARF 322 (351) T ss_dssp TTTCCCTTCC-SSSCCHHHHHHHHHHHHHCGGGGGGTCCSCCCCTTCSTTCGGGHHHHHHHHHH T ss_pred HCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHC T ss_conf 6498743338-67367999999999885381767640688770543456777670999999848 No 2 >3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} Probab=99.90 E-value=4.7e-20 Score=144.82 Aligned_cols=304 Identities=9% Similarity=0.008 Sum_probs=187.0 Q ss_pred CCCCCEEECHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 0487125457899999998506-515899999999999985078850005443577776555342564447888888776 Q T0588 20 QVANTRIYAAEKLAKVKEKADS-PLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKPDGL 98 (400) Q Consensus 20 ~~~p~ll~~~~~l~~~k~~~~~-~~~~~a~~~L~~~ad~~l~~~p~sV~~k~~~~~sg~~hdy~s~~py~wP~~~~~~g~ 98 (400) ..||.|+++.++++++|+++++ +.++..++.+++++++.+..++.....+. ..+ T Consensus 137 ~~HPRL~~~~~di~~lr~~i~~~p~~~~~~~~i~~~a~~~l~~p~~~~~~~~-----------------------~~~-- 191 (776) T 3a0o_A 137 TSHPRLWLNSEQLSAFADAVAKDPNHCGWAEFYEKSVEPWLERPVMPEPQPY-----------------------PNN-- 191 (776) T ss_dssp SSSCCSSCCHHHHHHHHHHHHHCTTGGGHHHHHHHHTHHHHSCCCCCCCCCC-----------------------GGG-- T ss_pred CCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------CCC-- T ss_conf 8897254288899999997547866899999999999999728887778764-----------------------222-- Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCC Q ss_conf 62146885177655334288999999999988888605888899999999998740531001455210013677777665 Q T0588 99 PYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMG 178 (400) Q Consensus 99 py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g 178 (400) +... ...............++..++++|.+|||++|+++|.+.|.+.+..+.. .+ ... T Consensus 192 ------~~~~-~~~~~~~~~~~~~~~~l~~la~ay~lt~d~ky~~~a~~~l~~~~~~~~~-----------~~----~~~ 249 (776) T 3a0o_A 192 ------TRVA-TLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAAWDTK-----------GA----TSR 249 (776) T ss_dssp ------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSCTT-----------ST----TST T ss_pred ------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-----------CC----CCC T ss_conf ------2034-6778788877899999999999998858899999999999998617887-----------88----775 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHH-HHHHHHHHHHC Q ss_conf 4136898989999999999998327988878999999999999998723136--55344334310799-99999888860 Q T0588 179 RGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVA--AEEQRAKNNHGLAY-DVQLTAYALYT 255 (400) Q Consensus 179 ~~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g--~~~~~~~nNhg~~~-~~~~~aia~~~ 255 (400) .+..+..+..+..++.||+.+ |+.|++++++.+++.+.....-+..+..+ .......+||..+. ...+++.++.+ T Consensus 250 ~~~d~~~~~~~~~lA~aYD~l--yd~Ls~eeR~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~nh~~~~~~~~l~~~alal 327 (776) T 3a0o_A 250 AYNDEAGFRVVVALAWGYDWL--YDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIAL 327 (776) T ss_dssp TTCHHHHHHHHHHHHHHHHHS--TTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCTTCHHHHHHHHHTHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 555267899999999999986--733999999999999999999998742235764421157708999999999888751 Q ss_pred -CCHHHHHHHHHHH---HHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC-CCHHHCCCCCCCHHHHH Q ss_conf -8999999999998---762100222010120456404576303566599999999999852-83222134625547999 Q T0588 256 -GNQDLAMKTIQEF---PEKRLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTL-GQDIYNATSQDGRSITA 330 (400) Q Consensus 256 -~d~~l~~~ai~~~---~~~~l~~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~~-G~DL~~~~~~~g~~L~~ 330 (400) ++.......++.. ...++..++.+||++.| +.+|+.+++..++.++++..+. |.|++. ...+.+ T Consensus 328 ~~e~pea~~wl~~a~~~l~~~~~~~~~~DG~~~E------G~~Y~~~~~~~l~~~~~~l~~~~g~d~~~-----~p~~~~ 396 (776) T 3a0o_A 328 QGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAE------GPHYWMTGMAYLIEAANLIRSYIGYDLYQ-----RPFFQN 396 (776) T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCTTBCTTSCBTT------CHHHHHHHHHHHHHHHHHHHHHHCCCGGG-----SHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHCCCHHC-----CHHHHH T ss_conf 6606789999999999999999854489888457------61599999999999999999704966110-----888999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 999999863678865672224445554-15788999999851388578999997 Q T0588 331 ALKFLIPYIGKPQSEWPYQQIKEWDKK-QEEACWILRRASFFDPKAGYEAIGAQ 383 (400) Q Consensus 331 a~ey~~~y~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~aa~~~~~p~~~~~~~~ 383 (400) +..|++..........++-|....... .......+...+..+++|....+.++ T Consensus 397 ~~~~~~~~~~P~~~~~~fgD~~~~~~~~~~~~~~~~~~~a~~~~d~~~~~~~~~ 450 (776) T 3a0o_A 397 TGRFPLYTKAPGTRRANFGDDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDH 450 (776) T ss_dssp TTHHHHHHSCTTCSSCSCSCCTTTTSCCCHHHHHHHHHHHHHHCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 999999962889611135656666788705677999999776099999999998 No 3 >3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar binding protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinum} PDB: 3e80_A* 2fut_A* 2fuq_A* Probab=99.83 E-value=1e-18 Score=136.32 Aligned_cols=284 Identities=10% Similarity=0.021 Sum_probs=168.7 Q ss_pred CCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 04871254578999999985065158999999999999850788500054435777765553425644478888887766 Q T0588 20 QVANTRIYAAEKLAKVKEKADSPLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKPDGLP 99 (400) Q Consensus 20 ~~~p~ll~~~~~l~~~k~~~~~~~~~~a~~~L~~~ad~~l~~~p~sV~~k~~~~~sg~~hdy~s~~py~wP~~~~~~g~p 99 (400) .+||.|+++.++|+++|.+++.++....+..+++.++......+ |...++.. T Consensus 23 ~~HPRL~~~~~dl~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 74 (749) T 3e7j_A 23 KTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADI----------------------------PEVKDFRF 74 (749) T ss_dssp SSSCCSSCCGGGGGGHHHHHHCGGGHHHHHHHHHHTSCCCTTTC----------------------------CSSCCHHH T ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC----------------------------CCCCCCCC T ss_conf 99857265987899999885498789999999975425776677----------------------------54458200 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCC Q ss_conf 21468851776553342889999999999888886058888999999999987405310014552100136777776654 Q T0588 100 YIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGR 179 (400) Q Consensus 100 y~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~ 179 (400) + ...+. ....+..||++|.+|||++||++|+++|..|+..+.. + +.+ . T Consensus 75 ~------------~~~~~----~~~~~~~LA~ayllTgD~kYa~~a~~~l~~~~~~~~~--~---------~~~-----~ 122 (749) T 3e7j_A 75 Y------------FNQKG----LTVRVELMALNYLMTKDPKVGREAITSIIDTLETATF--K---------PAG-----D 122 (749) T ss_dssp H------------HSCCS----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC--C---------CCT-----T T ss_pred H------------HHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC--C---------CCC-----C T ss_conf 0------------44589----9999999999871249899999999999999850775--7---------777-----6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHH-HHHHHHHHHHHHCC Q ss_conf 1368989899999999999983279888789999999999999987231365534--43343107-99999998888608 Q T0588 180 GAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQ--RAKNNHGL-AYDVQLTAYALYTG 256 (400) Q Consensus 180 ~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~--~~~nNhg~-~~~~~~~aia~~~~ 256 (400) .. .-.+..+..++.||+.+ ++.|++++++.+++.+......+.......... ...|||.. +..+.+++++++-+ T Consensus 123 ~~-~~~~~~~~~~a~aYDwl--y~~Ls~~er~~i~~~i~~~~~~l~~~~~~~~~~~~~~n~~w~~~~~~l~~~alal~~e 199 (749) T 3e7j_A 123 IS-RGIGLFMVTGAIVYDWC--YDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGAASEWMIMRDLLSVGIAIYDE 199 (749) T ss_dssp TH-HHHHHHHHHHHHHHHHT--GGGCCHHHHHHHHHHHHHHHTTSTTCSSSCSSCSSSSGGGTHHHHTHHHHHHHHTTTT T ss_pred CC-CCHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 66-44899999999999998--8658999999999999999999876400012321144636999999999999865065 Q ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-CCCHHHCCCCCCCHHHHHHHH Q ss_conf 999999999998762--10022201012045640457630356659999999999985-283222134625547999999 Q T0588 257 NQDLAMKTIQEFPEK--RLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIAST-LGQDIYNATSQDGRSITAALK 333 (400) Q Consensus 257 d~~l~~~ai~~~~~~--~l~~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~-~G~DL~~~~~~~g~~L~~a~e 333 (400) +.+..+..++..... .....+.+||+..| +.+|..|++..++.++.+.++ .|.|++ ...+.++.+ T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~~~~DG~~~E------G~~Y~~~~~~~~~~~~~~l~~~~g~d~~------~p~~~~~~~ 267 (749) T 3e7j_A 200 FPEMYNLAAGRFFKEHLVARNWFYPSHNYHQ------GMSALNVRFTNDLFALWILDRMGAGNVF------NPGQQFILY 267 (749) T ss_dssp CTHHHHHHHHHHHHTHHHHHHHHGGGCCCSS------HHHHHHHHHHHHHHHHHHHHHHTTCCCS------CGGGGGTTH T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEC------CCCCHHHHHHHHHHHHHHHHHCCCCCCC------CHHHHHHHH T ss_conf 8899999999999999988607289987211------7877999999999999999866185200------668999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH Q ss_conf 999863678865672224445554157889999998513885789 Q T0588 334 FLIPYIGKPQSEWPYQQIKEWDKKQEEACWILRRASFFDPKAGYE 378 (400) Q Consensus 334 y~~~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~aa~~~~~p~~~ 378 (400) |++-.....+...++-|.............+....+.....+.+. T Consensus 268 ~~l~~~~P~g~~~~fgD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (749) T 3e7j_A 268 DAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLN 312 (749) T ss_dssp HHHHTBCTTSCBCCCSSCCCCSSSCCCCHHHHHHHHHHHTCHHHH T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH T ss_conf 999961989976326798853456569999999862703279999 No 4 >2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Probab=94.74 E-value=0.17 Score=26.62 Aligned_cols=181 Identities=11% Similarity=0.023 Sum_probs=86.5 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 88888605888899999999998740531001455210013677777665413689898999999999999832798887 Q T0588 129 LGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPK 208 (400) Q Consensus 129 LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~ 208 (400) |-++|.+|||++|.+.|.+....+.- +. .......-...|. ....-++.++++..+ T Consensus 51 lwl~ye~Tgd~~y~~~a~~~~~~~~~----~~----------~~~~~~d~~d~gf---~~~~s~~~~Y~~Tgd------- 106 (377) T 2ahf_A 51 LWLCYEYTGDEQYREGAVRTVASFRE----RL----------DRFENLDHHNIGF---LYSLSAKAQWIVEKD------- 106 (377) T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH----HH----------TTTTTCCBSTHHH---HHHTTHHHHHHHHCC------- T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH----HH----------HCCCCCCCCCHHH---HHHHHHHHHHHHCCC------- T ss_conf 99999986999999999999999999----86----------2547766402067---787678999987399------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC-CC-C------CCCHHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999998723136553-44-3------3431079-----99999988886089999999999987621002 Q T0588 209 VKKGMKEWFTQLVEWMQTSPVAAEE-QR-A------KNNHGLA-----YDVQLTAYALYTGNQDLAMKTIQEFPEKRLFA 275 (400) Q Consensus 209 d~~~~~~w~~~~~~wl~~s~~g~~~-~~-~------~nNhg~~-----~~~~~~aia~~~~d~~l~~~ai~~~~~~~l~~ 275 (400) +..++......+.|....+-... .. + .+...++ ....++-.+-.++|++..+.++..+.. .+.. T Consensus 107 --~~y~~~a~~~a~~L~~~~~~~~g~~~~W~~~~~~~~~~~~~iD~lm~~~ll~~~~~~tgd~~y~~~A~~~~~~-~~~~ 183 (377) T 2ahf_A 107 --ESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALK-SRRF 183 (377) T ss_dssp --HHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHH-HHHH T ss_pred --HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHH T ss_conf --9899999999999998427677823506878887777521010566799999998851988899999999999-9998 Q ss_pred HHHHHCCHHHHHCC-----------C-CCC----CHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 22010120456404-----------5-763----0356659999999999985283222134625547999999999863 Q T0588 276 QIEPDGKQPLELAR-----------T-TAL----GYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYI 339 (400) Q Consensus 276 ~i~~dG~q~~E~~R-----------~-~~~----~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y~ 339 (400) .+.+||+..+.... | |+. ..+.-.=..+..++++.+..|..-+ -....+..+|+++.. T Consensus 184 l~~~d~s~~~~~~~d~~tG~~~~~~t~qG~~~~s~WsRGqgW~i~gla~~y~~t~~~~y------l~~a~~ia~~~l~~~ 257 (377) T 2ahf_A 184 LVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADL------LETAKRMARHFLARV 257 (377) T ss_dssp TBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHTTC T ss_pred HCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHC T ss_conf 06889974788887079885335887778888308876568999989999998378367------899999999999708 Q ss_pred CCC Q ss_conf 678 Q T0588 340 GKP 342 (400) Q Consensus 340 ~~~ 342 (400) ... T Consensus 258 p~d 260 (377) T 2ahf_A 258 PED 260 (377) T ss_dssp CTT T ss_pred CCC T ss_conf 745 No 5 >1rwh_A Chondroitin AC lyase; chondroitinase, chondroitin lyase; HET: ASG GCT GAD; 1.25A {Arthrobacter aurescens} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1rwc_A* 1rwf_A* 1rwg_A* 1rwa_A* 1rw9_A Probab=94.70 E-value=0.18 Score=26.56 Aligned_cols=244 Identities=13% Similarity=0.097 Sum_probs=127.9 Q ss_pred CHHHHHHHHHHHH-----C-------CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5789999999850-----6-------515899999999999985078850005443577776555342564447888888 Q T0588 28 AAEKLAKVKEKAD-----S-------PLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKP 95 (400) Q Consensus 28 ~~~~l~~~k~~~~-----~-------~~~~~a~~~L~~~ad~~l~~~p~sV~~k~~~~~sg~~hdy~s~~py~wP~~~~~ 95 (400) ..++++.+|.++. . +........|-++|...+.. ++ +.....+-|||... T Consensus 5 ~~~d~~~lr~rw~~~~~g~~~~~~~~~~~~~~~~~l~~~a~~~~~~-----~~------------~~~~~~~lw~d~~~- 66 (757) T 1rwh_A 5 GAAEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAK-----LD------------AAAGRTSVFTDLSL- 66 (757) T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCTTCHHHHHHHHHHHHHHHHHHHT-----BC------------CCTTCSCSBTTCCT- T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HH------------CCCCCCCCCCCCCC- T ss_conf 7789999999999986398877756888999999988999999997-----10------------36776656778877- Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCC Q ss_conf 77662146885177655334288999999999988888605-----8888999999999987405310014552100136 Q T0588 96 DGLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFS-----GDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTI 170 (400) Q Consensus 96 ~g~py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~lT-----Gd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~ 170 (400) .+...+.....+...+|+||..- +|++-.++.+..|. |+.+.. .++. T Consensus 67 ------------------~~~a~~~~~~~rl~~mA~ay~~~gs~~y~~~~l~~~I~~~l~-~l~~~~--y~~~------- 118 (757) T 1rwh_A 67 ------------------AKDAEMVTTYTRLSQLATAWATPTAAVFGDAAVLAAIKAGLA-DANTLC--YNDR------- 118 (757) T ss_dssp ------------------TSHHHHHHHHHHHHHHHHHHTSTTSTTTTCHHHHHHHHHHHH-HHHHHT--SSTT------- T ss_pred ------------------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHCC--CCCC------- T ss_conf ------------------763678999999999999983999856489999999999999-988643--3579------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCC-CCCHHHHH Q ss_conf 777776654136898989999999999998327988878999999999999998723136-----553443-34310799 Q T0588 171 PGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVA-----AEEQRA-KNNHGLAY 244 (400) Q Consensus 171 ~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g-----~~~~~~-~nNhg~~~ 244 (400) ....|.|=.=.-|.. -.+.+..-||+ +.++++.+....+-+ .++...... ...... ..| -+|. T Consensus 119 ---~~~~gNWW~~eIG~P-~~l~~~liLl~--d~l~~~~~~~~~~~i----~~f~pdp~~~~~~~~~~~~~tGaN-~~d~ 187 (757) T 1rwh_A 119 ---KEEVGNWWSWEIGVP-RALADAMVLLH--AELSAAERTAYCAAI----DHFVPDPWLQFPPKRGKITSVGAN-RVDL 187 (757) T ss_dssp ---CCCCSCHHHHHTHHH-HHHHHHHHHTT--TTSCHHHHHHHHHHH----HHHCSCTTEESCGGGCCEECCHHH-HHHH T ss_pred ---CCCCCCCCHHHHCCH-HHHHHHHHHHH--HHCCHHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCCCCCH-HHHH T ss_conf ---987888207764558-99999998740--125998999999999----975768422455667864465339-9999 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 999998888608999999999998762100-----222010120456404576303-56659999999999985283222 Q T0588 245 DVQLTAYALYTGNQDLAMKTIQEFPEKRLF-----AQIEPDGKQPLELARTTALGY-TIFNLGHMLDMCSIASTLGQDIY 318 (400) Q Consensus 245 ~~~~~aia~~~~d~~l~~~ai~~~~~~~l~-----~~i~~dG~q~~E~~R~~~~~Y-~~~~L~~l~~~a~~a~~~G~DL~ 318 (400) ...++.-|++.+|.+.+..+++.... .+. .-|.+||++-|-. +..| -.|+...|..+++++.-..--=| T Consensus 188 a~~~l~~glL~~d~~~l~~a~~~l~~-~~~~v~~~dGf~~DGSf~qH~----~~~Y~G~YG~~~l~~~~~~~~~l~gT~~ 262 (757) T 1rwh_A 188 CQGIIIRSLAGEDPTKLNHAVAGLSQ-VWQYVTSGDGIFRDGSFIQHS----TTPYTGSYGVVLLTGLSKLFSLLGGTAF 262 (757) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHGGG-GGSCBSSSSEEBTTSCEEETT----TEECTTTHHHHHHHHHHHHHHHHTTSTT T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH-HHEECCCCCCEECCCCEECCC----CEEECCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999984689999999986556-636216677672578754368----8031570499999999999999779987 Q ss_pred CCCCCCCHHHHHHHHHHH Q ss_conf 134625547999999999 Q T0588 319 NATSQDGRSITAALKFLI 336 (400) Q Consensus 319 ~~~~~~g~~L~~a~ey~~ 336 (400) ....+. +..-.+|+. T Consensus 263 ~l~~~~---~~~l~~~i~ 277 (757) T 1rwh_A 263 EVSDPT---RSIFFDAVE 277 (757) T ss_dssp CCCCGG---GHHHHHHHH T ss_pred CCCHHH---HHHHHHHHH T ss_conf 679899---999999999 No 6 >1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A {Bacillus SP} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1x1h_A* 1x1j_A* 2e22_A* 1j0m_A 1j0n_A* 2e24_A Probab=93.40 E-value=0.31 Score=24.95 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=127.5 Q ss_pred HHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 89999999850------------651589999999999998507885000544357777655534256444788888877 Q T0588 30 EKLAKVKEKAD------------SPLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKPDG 97 (400) Q Consensus 30 ~~l~~~k~~~~------------~~~~~~a~~~L~~~ad~~l~~~p~sV~~k~~~~~sg~~hdy~s~~py~wP~~~~~~g 97 (400) ++++.+|.+|. ++...+.+.+|.++|+..+.. ++ +.....+-||+... T Consensus 2 ~d~~~lr~rw~~~~~g~~~~~~~d~~~~~~~~~l~~~a~~~~~~-----~~------------~~~~~~~lw~~~~~--- 61 (752) T 1x1i_A 2 DEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWED-----MD------------LSSSRTYIWYALRG--- 61 (752) T ss_dssp CHHHHHHHHHHHHHHCCTTCCTTCHHHHHHHHHHHHHHHHHHHH-----CC------------CCTTCSCSSGGGCC--- T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----CC------------CCCCCCCCCCCCCC--- T ss_conf 57999999999986188868877889999999999999999986-----56------------66677754578877--- Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCC Q ss_conf 66214688517765533428899999999998888860-----5888899999999998740531001455210013677 Q T0588 98 LPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYF-----SGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPG 172 (400) Q Consensus 98 ~py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~l-----TGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g 172 (400) ..+..++.....+...+|+||.. -+|++-.++.++-|.-|..+ .+|+.. T Consensus 62 ---------------~~~s~~~~~~~~rl~~mA~Ay~~pgs~~y~~~~l~~~I~~al~~~~~~---~y~~~~-------- 115 (752) T 1x1i_A 62 ---------------NGTSDNVNAVYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVN---SYNSTR-------- 115 (752) T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHHHSTTCTTTTCHHHHHHHHHHHHHHHHH---TSSTTS-------- T ss_pred ---------------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCC-------- T ss_conf ---------------775257899999999999997299985648999999999999999962---787778-------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 77766541368989899999999999983279888789999999999999987231365534433431079999999888 Q T0588 173 KNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYA 252 (400) Q Consensus 173 ~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~~~~nNhg~~~~~~~~aia 252 (400) ....+.|=.=.-|.. -.+.+..-||+ +.++++.+....+-+ ..+..+. ..+ ..| -+|....++.-| T Consensus 116 -~~~~~NWW~~eIg~P-~~l~~~liLl~--~~l~~~~~~~~~~~i----~~~~p~~----~~T-GaN-~~d~a~~~~~~g 181 (752) T 1x1i_A 116 -SRSAYNWWHWQLGIP-MSLNDIAVLLY--DDISAARMATYMDTI----DYFTPSI----GLT-GAA-RAWQAIVVGVRA 181 (752) T ss_dssp -CTTSSSHHHHHTHHH-HHHHHHHHHTG--GGCCHHHHHHHHHHH----HHHCCSC----CCC-HHH-HHHHHHHHHHHH T ss_pred -CCCCCCCCHHHHCCH-HHHHHHHHHHC--CCCCHHHHHHHHHHH----HHHCCCC----CCC-CCH-HHHHHHHHHHHH T ss_conf -988898446663358-99998996714--548999999999999----9758998----765-654-777899999999 Q ss_pred HHCCCHHHHHHHHHHHHHH-HHH-----HHHHHHCCHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHCCCHHHCCCCCCC Q ss_conf 8608999999999998762-100-----2220101204564045763035-66599999999999852832221346255 Q T0588 253 LYTGNQDLAMKTIQEFPEK-RLF-----AQIEPDGKQPLELARTTALGYT-IFNLGHMLDMCSIASTLGQDIYNATSQDG 325 (400) Q Consensus 253 ~~~~d~~l~~~ai~~~~~~-~l~-----~~i~~dG~q~~E~~R~~~~~Y~-~~~L~~l~~~a~~a~~~G~DL~~~~~~~g 325 (400) ++.+|.+.+..+++..... .+. .-+.+||++-|-. +..|. .|+...+..+++++.-...--|....+.- T Consensus 182 lL~~d~~~~~~a~~~l~~~~~~~~~~~gdGf~~DGSf~qH~----~~~Y~G~YG~~~l~~~~~~~~~l~gT~~~l~~~~~ 257 (752) T 1x1i_A 182 VIVKDAVKLAAARNGLSGTGIFPYATGGDGFYADGSFVQHT----TFAYTGGYGSSVLETTANLMYLLSGSTWSVSDPNQ 257 (752) T ss_dssp HHHTCHHHHHHHHHHTTSTTSSSCCSSSSEECTTSCEEETT----TEECTTTHHHHHHHHHHHHHHHHTTSTTCCCCGGG T ss_pred HHCCCHHHHHHHHHHHHHCCEECCCCCCCCEECCCCEEECC----CEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 87099999999998633301002225787274278745348----72125577999999999999996799776787899 Q ss_pred HHHHHHHH-HHHHHH Q ss_conf 47999999-999863 Q T0588 326 RSITAALK-FLIPYI 339 (400) Q Consensus 326 ~~L~~a~e-y~~~y~ 339 (400) ..|...+. -..|+. T Consensus 258 ~~l~~~i~~~~~~~~ 272 (752) T 1x1i_A 258 SNVWQWIYEAYRPLL 272 (752) T ss_dssp GHHHHHHHHTTGGGE T ss_pred HHHHHHHHHHHHHHE T ss_conf 999999997415433 No 7 >2wda_A PL8, putative secreted lyase; hyaluronate lyase, chondroitin lyase, family 8; HET: L42; 2.30A {Streptomyces violaceoruber} Probab=92.39 E-value=0.43 Score=24.05 Aligned_cols=244 Identities=11% Similarity=0.028 Sum_probs=130.1 Q ss_pred CHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5789999999850-----------65158999999999999850788500054435777765553425644478888887 Q T0588 28 AAEKLAKVKEKAD-----------SPLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKPD 96 (400) Q Consensus 28 ~~~~l~~~k~~~~-----------~~~~~~a~~~L~~~ad~~l~~~p~sV~~k~~~~~sg~~hdy~s~~py~wP~~~~~~ 96 (400) +.++++.+|.+|. +++.++.+..+-+.|.+.+.. +++. +.|-|||.. T Consensus 23 ~~d~~~~lr~~w~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~--------------~~~lW~d~~--- 80 (765) T 2wda_A 23 TADPYDALRRRWLGITLGTGYDPAAEPYASRLAETGERAREHRAT-----MAPT--------------PTSLWPGHP--- 80 (765) T ss_dssp -CHHHHHHHHHHHHHHHCCSCCTTSTTHHHHHHHHHHHHHHHHHH-----CCCB--------------TTBSSTTCB--- T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HCCC--------------CCCCCCCCC--- T ss_conf 488999999999997518888866889999999999999999986-----4437--------------788888888--- Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCC Q ss_conf 766214688517765533428899999999998888860-----588889999999999874053100145521001367 Q T0588 97 GLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYF-----SGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIP 171 (400) Q Consensus 97 g~py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~l-----TGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~ 171 (400) | .+..++.....+...+|+||.. .+|++-.++.++-|.-|..+ ..|+. T Consensus 81 ---~-------------~~s~~~~~~~~rL~~mA~Ay~~pgs~~y~d~~l~~~I~~~l~~~~~~---~y~~~-------- 133 (765) T 2wda_A 81 ---F-------------DPPAGITFAYGRLWTMTEAYVQEGTGATGDPALLADILRGLDHLSAT---VYHPA-------- 133 (765) T ss_dssp ---S-------------SSTHHHHHHHHHHHHHHHHHHSTTSSCTTCHHHHHHHHHHHHHHHHH---TSSTT-------- T ss_pred ---C-------------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCC-------- T ss_conf ---8-------------85577999999999999998099986547999999999999999971---77789-------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHH Q ss_conf 77776654136898989999999999998327988878999999999999998723136553443-34310799999998 Q T0588 172 GKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRA-KNNHGLAYDVQLTA 250 (400) Q Consensus 172 g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~~~-~nNhg~~~~~~~~a 250 (400) ....|.|=.=.-|.. -.+.+..-+|.+ .+++++.....+.+..|. -....+...... ..| -++...-++. T Consensus 134 --~~~~gNWW~~eIG~P-~~l~~~l~ll~d--~l~~~~~~~~~~~i~~f~---pd~~~~~~~~~~TGaN-r~d~a~~~l~ 204 (765) T 2wda_A 134 --TTRYGNWWEWQIGSP-RLLMDITAALYD--HLGADRVAAACAAVDHFV---PDAMLGAYTGTSTGAN-RVDLCRSVAL 204 (765) T ss_dssp --CCCCSCHHHHHTHHH-HHHHHHHHHTHH--HHCHHHHHHHHHHHHHHS---CGGGGSSSCTTSSHHH-HHHHHHHHHH T ss_pred --CCCCCCHHHHHHCCH-HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCH-HHHHHHHHHH T ss_conf --988887047664058-999999998655--419999999999999657---7852247777788844-7887999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC Q ss_conf 888608999999999998762100-----222010120456404576303566599999999999852832221346255 Q T0588 251 YALYTGNQDLAMKTIQEFPEKRLF-----AQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDG 325 (400) Q Consensus 251 ia~~~~d~~l~~~ai~~~~~~~l~-----~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g 325 (400) -|++.+|.+.+..+++.... .+. .-|.+||++-|-.. ++ ..-.|+...+..++++..-..--=|....+. T Consensus 205 ~glL~~d~~~i~~a~~~l~~-~~~~v~~gdGf~~DGSfiqH~~--~~-Y~G~YG~~~l~g~~~~~~~l~gT~~~l~~~~- 279 (765) T 2wda_A 205 RGVLGRAPAKIALARDALSP-VFPYVTKGDGLYADGSFVQHTW--VA-YSGTYGQVMLDGLGRLFTLLAGSEWEVTDPG- 279 (765) T ss_dssp HHHHTTCHHHHHHHHHHHGG-GSSCBSSSSEEBTTSCEEETTT--EE-CTTTHHHHHHHHHHHHHHHHTTSTTCCCCTT- T ss_pred HHHHHCCHHHHHHHHHHHHH-HEEEECCCCCEECCCCEECCCC--EE-ECCHHHHHHHHHHHHHHHHHCCCCCCCCHHH- T ss_conf 99884799999999997556-5064037885724676560588--44-5674799999999999999779986579779- Q ss_pred HHHHHHHHHHH Q ss_conf 47999999999 Q T0588 326 RSITAALKFLI 336 (400) Q Consensus 326 ~~L~~a~ey~~ 336 (400) +..-.+|+. T Consensus 280 --~~~l~~~i~ 288 (765) T 2wda_A 280 --RQLVLDSVE 288 (765) T ss_dssp --HHHHHHHHH T ss_pred --HHHHHHHHH T ss_conf --999999999 No 8 >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3e33_B* 1d8e_B* 1fpp_B* ... Probab=89.18 E-value=0.86 Score=22.16 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=91.1 Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHH Q ss_conf 5177655-334288999999999988888605888899999999998740531001455210013677777665413689 Q T0588 106 QRNPELD-KLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMI 184 (400) Q Consensus 106 ~~nP~~~-~~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~ 184 (400) +..|..+ ..|.+++.-+..++..|.|.= ..-++.+.+++++.|... .+|+=.|+ +..+....|. T Consensus 87 ~~lp~~y~~lD~sr~~l~yw~L~aL~lL~-~~~~~~~~~~ii~~l~~~-------q~~dGGFg-------g~~~~~~hla 151 (437) T 2h6f_B 87 RQLTDAYECLDASRPWLCYWILHSLELLD-EPIPQIVATDVCQFLELC-------QSPEGGFG-------GGPGQYPHLA 151 (437) T ss_dssp TEECGGGGGGTTCHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHH-------BCTTSSBB-------SSTTCCBCHH T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHH-------CCCCCCCC-------CCCCCCCCCH T ss_conf 86887466845551999999999999859-985288999999999985-------38999958-------8899887625 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCC--HHH Q ss_conf 898999999999999832798887899999999999999872313655--3443343107999999988886089--999 Q T0588 185 DIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAE--EQRAKNNHGLAYDVQLTAYALYTGN--QDL 260 (400) Q Consensus 185 ~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~--~~~~~nNhg~~~~~~~~aia~~~~d--~~l 260 (400) .+ +..+.+..++.....++.-+++++.+| |.....-.. ......+-+++....++++.-.+|. .+. T Consensus 152 ~T---y~Al~~L~~lg~~~~~~~idr~~i~~f-------L~slQ~~DGSF~~~~g~e~D~R~tYcAl~~l~lL~~~~~~~ 221 (437) T 2h6f_B 152 PT---YAAVNALCIIGTEEAYDIINREKLLQY-------LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDL 221 (437) T ss_dssp HH---HHHHHHHHHHCCHHHHTTSCHHHHHHH-------HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTT T ss_pred HH---HHHHHHHHHHCCCCCCCHHHHHHHHHH-------HHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH T ss_conf 79---999999998198630124569999999-------99808999986405898853899999999999828997789 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 999999987621002220101204564045763035665999999999998528322213462554799999999986 Q T0588 261 AMKTIQEFPEKRLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPY 338 (400) Q Consensus 261 ~~~ai~~~~~~~l~~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y 338 (400) .+.+++.. ..+...||++.++-+-. + |..+.--+++.++.+....- ..+.+.+.|++.= T Consensus 222 ~~~~~~~L-----~scQn~DGGfG~~pg~E-s--Hgg~TfCalaaL~ll~~~~~-----------~d~~~l~~WL~~R 280 (437) T 2h6f_B 222 FEGTAEWI-----ARCQNWEGGIGGVPGME-A--HGGYTFCGLAALVILKRERS-----------LNLKSLLQWVTSR 280 (437) T ss_dssp TTTHHHHH-----HHHBCTTSSBCSSTTSC-C--CHHHHHHHHHHHHHHTCGGG-----------SCHHHHHHHHHHT T ss_pred HHHHHHHH-----HHHCCCCCCCCCCCCCC-C--CHHHHHHHHHHHHHCCCCCC-----------CCHHHHHHHHHHC T ss_conf 99999999-----98178888756889998-6--47799999999995578664-----------6899999999975 No 9 >2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} Probab=88.95 E-value=0.89 Score=22.06 Aligned_cols=179 Identities=12% Similarity=0.028 Sum_probs=83.8 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 88888605888899999999998740531001455210013677777665413689898999999999999832798887 Q T0588 129 LGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPK 208 (400) Q Consensus 129 LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~ 208 (400) |-|+|..|||++|.+.|.+....+.- +..+.. ...-...|. ....-++.++++..+ +. T Consensus 77 lwl~ye~Tgd~~~~~~a~~~~~~~~~----~~~~~~----------~~d~hd~Gf---~~~~s~~~~y~ltgd-----~~ 134 (397) T 2zzr_A 77 LWLAYEYNQDKKLKNIAHKNVLSFLN----RINNRI----------ALDHHDLGF---LYTPSCTAEYRINGD-----VK 134 (397) T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH----HHHTTC----------SCCSSTHHH---HHTTTHHHHHHHHCC-----HH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH----HHHCCC----------CCCCCCCHH---HHHHHHHHHHHHCCH-----HH T ss_conf 99999987999999999999999997----631357----------755457505---589889999984582-----98 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHH-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999872313655-------34433431079999-----999888860899999999999876210022 Q T0588 209 VKKGMKEWFTQLVEWMQTSPVAAE-------EQRAKNNHGLAYDV-----QLTAYALYTGNQDLAMKTIQEFPEKRLFAQ 276 (400) Q Consensus 209 d~~~~~~w~~~~~~wl~~s~~g~~-------~~~~~nNhg~~~~~-----~~~aia~~~~d~~l~~~ai~~~~~~~l~~~ 276 (400) .++-.....+.|...+.-.. .....+++.++.+. .++-.+-.++|....+.|+..+.. .+... T Consensus 135 ----~~~~a~~aA~~L~~r~~~~~g~i~~w~~~~~~~~~~~iiD~lmnl~lL~~a~~~tgd~~y~~~A~~h~~~-~~~~l 209 (397) T 2zzr_A 135 ----ALEATIKAADKLMERYQEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYA-SANNV 209 (397) T ss_dssp ----HHHHHHHHHHHHHTTEETTTTEECCSSSTTCGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHT T ss_pred ----HHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHC T ss_conf ----9999999999999711767896412674467788755666353199999999860988999999999999-99973 Q ss_pred HHHHCCHHHHHCC-----------C-CCCC----HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 2010120456404-----------5-7630----3566599999999999852832221346255479999999998636 Q T0588 277 IEPDGKQPLELAR-----------T-TALG----YTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIG 340 (400) Q Consensus 277 i~~dG~q~~E~~R-----------~-~~~~----Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y~~ 340 (400) +.+||+..++... | |+.+ .+.-.-.++..++++.+..+..-| -....+..+|.+.... T Consensus 210 ~r~dgs~~h~~~fd~~tG~~~~~~t~qG~~~~S~WaRGqaW~i~G~a~~y~~t~d~~y------l~~a~~ia~~~l~~lp 283 (397) T 2zzr_A 210 VRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQ------IILFKGMTNYFLNRLP 283 (397) T ss_dssp BCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHTCC T ss_pred CCCCCCEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHCC T ss_conf 8888985778877289886405877778887328887769999999999999689879------9999999999996487 No 10 >3gt5_A N-acylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.70A {Xylella fastidiosa M23} Probab=88.62 E-value=0.94 Score=21.92 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=37.7 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 766214688517765533428899999999998888860588889999999999 Q T0588 97 GLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLN 150 (400) Q Consensus 97 g~py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~ 150 (400) +..+...||+..|... ..+...+..++..+.||.+||++.|++.|.+++. T Consensus 33 ~f~~~~~dg~~~~~~e----K~l~~qar~~~~ya~Ay~~tg~~~y~~~A~~~~~ 82 (402) T 3gt5_A 33 FFHYFRDDGSIYNATH----RHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLS 82 (402) T ss_dssp BCCEECTTSCEEESSE----EEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_pred CEEEECCCCCCCCCCC----EEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 0677889998889876----1259989999999999987698889999999999 No 11 >1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A* Probab=86.14 E-value=1.3 Score=21.01 Aligned_cols=249 Identities=13% Similarity=0.130 Sum_probs=131.8 Q ss_pred ECHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 45789999999850------------651589999999999998507885000544357777655534256444788888 Q T0588 27 YAAEKLAKVKEKAD------------SPLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSK 94 (400) Q Consensus 27 ~~~~~l~~~k~~~~------------~~~~~~a~~~L~~~ad~~l~~~p~sV~~k~~~~~sg~~hdy~s~~py~wP~~~~ 94 (400) .+..+...+|.+|. ++..++...+|.+.|++.+.. +++.. -..|=|||-. T Consensus 77 ~~~~~~~~lr~~w~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~------------~~~~lw~dl~- 138 (814) T 1f1s_A 77 STEDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEA-----IKLDS------------NRTFLWKDLD- 138 (814) T ss_dssp CCCSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHH-----CCCCT------------TCSCSCGGGC- T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HCCCC------------CCCCCCCCCC- T ss_conf 66108999999987865386667756888999999999999999987-----32687------------7776778998- Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCC Q ss_conf 87766214688517765533428899999999998888860-----5888899999999998740531001455210013 Q T0588 95 PDGLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYF-----SGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQT 169 (400) Q Consensus 95 ~~g~py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~l-----TGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~ 169 (400) ...+-..+.....+...+|+||.- -+|++-.++.++-|.-|..+ ..|++ +. T Consensus 139 -----------------~~~~s~~~~~~~~rL~~mA~Ay~~pgs~~y~d~~l~~~I~~aL~~l~~~---~y~~~----~~ 194 (814) T 1f1s_A 139 -----------------NLNNSAQLTATYRRLEDLAKQITNPHSTIYKNEKAIRTVKESLAWLHQN---FYNVN----KD 194 (814) T ss_dssp -----------------CTTSHHHHHHHHHHHHHHHHHHTCTTSTTTTCHHHHHHHHHHHHHHHHH---TSSTT----CC T ss_pred -----------------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCC----CC T ss_conf -----------------8774058999999999999997499984657999999999999999963---78777----78 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCC---CCCCC-CCCHHHHH Q ss_conf 67777766541368989899999999999983279888789999999999999987231-365---53443-34310799 Q T0588 170 IPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSP-VAA---EEQRA-KNNHGLAY 244 (400) Q Consensus 170 ~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~-~g~---~~~~~-~nNhg~~~ 244 (400) .++. +.|=-=.-|.. -.+.+..-||++ .++++.+....+-+..+ +-... .+. ..... ..| -++. T Consensus 195 ~~~~----~NWW~weIG~P-~~l~~~liLl~d--~l~~~~~~~~~~~i~~f---~pd~~~~~~~~~~~~~~tGaN-~vd~ 263 (814) T 1f1s_A 195 IEGS----ANWWDFEIGVP-RSITGTLSLMNN--YFTDAEIKTYTDPIEHF---VPDAEYFRKTLVNPFKALGGN-LVDM 263 (814) T ss_dssp CCTT----SCHHHHHTHHH-HHHHHHHHHTGG--GSCHHHHHHHHHHHHHH---CCCTTEESTTSSCCEECCHHH-HHHH T ss_pred CCCC----CCCEEEECCCH-HHHHHHHHHHCC--CCCHHHHHHHHHHHHHH---CCCHHHHCCCCCCCCCCCCCH-HHHH T ss_conf 8888----88324114857-899989977122--06999999999989875---788044045767744465445-9999 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHCCCHHH Q ss_conf 999998888608999999999998762100-----2220101204564045763035-6659999999999985283222 Q T0588 245 DVQLTAYALYTGNQDLAMKTIQEFPEKRLF-----AQIEPDGKQPLELARTTALGYT-IFNLGHMLDMCSIASTLGQDIY 318 (400) Q Consensus 245 ~~~~~aia~~~~d~~l~~~ai~~~~~~~l~-----~~i~~dG~q~~E~~R~~~~~Y~-~~~L~~l~~~a~~a~~~G~DL~ 318 (400) ...++.-|++.+|.+++..+++.... .+. .-|.+||++-|- .+..|. .|+...+..+++++.-..--=| T Consensus 264 a~~~i~~glL~~d~~~v~~a~~~i~~-~~~~v~~gdGf~~DGSf~qH----~~~~Y~G~YG~~~l~~~~~i~~ll~gT~~ 338 (814) T 1f1s_A 264 GRVKIIEGLLRKDNTIIEKTSHSLKN-LFTTATKAEGFYADGSYIDH----TNVAYTGAYGNVLIDGLTQLLPIIQETDY 338 (814) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGG-GSCCBSSSSEEBTTSCEEET----TTEECTTTHHHHHHHHHHHHHHHHTTSTT T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH-HEECCCCCCCEEECCCEEEC----CCEEECCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999883899999999997575-41012578857515866731----88664655799999999999999679987 Q ss_pred CCCCCCCHHHHHHHHHHH Q ss_conf 134625547999999999 Q T0588 319 NATSQDGRSITAALKFLI 336 (400) Q Consensus 319 ~~~~~~g~~L~~a~ey~~ 336 (400) .. ....+..-.+|+. T Consensus 339 ~l---~~~~~~~l~~~i~ 353 (814) T 1f1s_A 339 KI---SNQELDMVYKWIN 353 (814) T ss_dssp CC---CHHHHHHHHHHHH T ss_pred CC---CHHHHHHHHHHHH T ss_conf 67---9899999999999 No 12 >2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A Probab=85.51 E-value=1.4 Score=20.82 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=31.4 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC Q ss_conf 621468851776553342889999999999888886058888999999999987405 Q T0588 99 PYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLD 155 (400) Q Consensus 99 py~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW~~~ 155 (400) .|+-.||+..|-++-..-+++.+...+ +=.+|||++|.+.|.++++ ||.+ T Consensus 43 ~w~fpdG~~~~~SNfasQQnllR~L~~------LS~lTgd~kY~q~A~~~~~-yfl~ 92 (543) T 2v8i_A 43 EWIFPDGRRAVLSNFSAQQNLMRVMSG------LSQLSGDPRYQKRAEDIVR-YHFQ 92 (543) T ss_dssp EEECTTSCEEEEECGGGCHHHHHHHHH------HHHHHCCTHHHHHHHHHHH-HHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH------HHHCCCCHHHHHHHHHHHH-HHHH T ss_conf 540899873215786776049999999------8733487789999999999-9996 No 13 >3k11_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Probab=83.40 E-value=1.7 Score=20.24 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=82.7 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC---CCC-CCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 988888605888899999999998740531001---455-2100136777776654136898989999999999998327 Q T0588 128 TLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKM---NPH-LTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSK 203 (400) Q Consensus 128 ~LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~m---nP~-l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~ 203 (400) .+..+|..|||++|.+.+.+.+..-+ +..... .++ ........+........ ..+..+..++..+..-+ T Consensus 90 Gm~~~ye~TGD~kY~dy~~~~~d~~i-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d---d~g~~~~~l~~ly~~~~--- 162 (445) T 3k11_A 90 ALIAAAETTGDKRYTDYVQNRFRFLA-EVAPHFKRVYEEKGKTDSQLLQILTPHALD---DAGAVCTAMIKLRLKDE--- 162 (445) T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCCCHHHHHHHSCCSGG---GTHHHHHHHHHHHHHCT--- T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCCCCCHHHCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHH--- T ss_conf 99999999698999999999999976-024520111310024334332234531123---11689999999975300--- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHHHHH------HHHHH--CCCHHHHHHHHHHHHHH Q ss_conf 98887899999999999999872313655344334----31079999999------88886--08999999999998762 Q T0588 204 AFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKN----NHGLAYDVQLT------AYALY--TGNQDLAMKTIQEFPEK 271 (400) Q Consensus 204 ~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~~~~n----Nhg~~~~~~~~------aia~~--~~d~~l~~~ai~~~~~~ 271 (400) .+ .........+++++.......+...++ -..+|.+.--| .++.+ .+|.+.++.++.++... T Consensus 163 --~~----~~~~~i~~~~d~~l~~~pRt~~G~f~h~~~~~~q~W~D~lyM~~Pfla~~~~~~~~~~~~y~d~a~~Q~~~~ 236 (445) T 3k11_A 163 --SL----PVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQF 236 (445) T ss_dssp --TC----CCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH T ss_pred --CH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf --57----789999999999872399687886213767888466554446489999999985356689999999999999 Q ss_pred HHHHHHHHHCCH----HHHHCCCCCCCHHHH-HHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 100222010120----456404576303566-599999999999852832221346255479999999998636788656 Q T0588 272 RLFAQIEPDGKQ----PLELARTTALGYTIF-NLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEW 346 (400) Q Consensus 272 ~l~~~i~~dG~q----~~E~~R~~~~~Y~~~-~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y~~~~~~~~ 346 (400) + .....++.+. +.+.+...+.++..- +=..++.++++....-.|-=.+ ..--..+.+.++-++++... +.-| T Consensus 237 ~-~~l~d~~tgL~~h~w~~~~~~~~~~~W~RgnGW~~~al~~~L~~lP~~~~~~-~~l~~~~~~~~~~l~~~Qd~-~G~W 313 (445) T 3k11_A 237 A-DRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQR-PKVMDYFRAHVRGVTALQSG-EGFW 313 (445) T ss_dssp H-HHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHHTTCCT-TSCE T ss_pred H-HHCCCCCCCCEEECCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHCCCC-CCCC T ss_conf 9-9560888885444557788998744100022068989999997589877319-99999999999999753799-9951 No 14 >2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} Probab=81.89 E-value=2 Score=19.87 Aligned_cols=195 Identities=14% Similarity=0.161 Sum_probs=85.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 899999999998888860588889999-----999999874053100145521001367777766541368989899999 Q T0588 118 KLGDMSKAVTTLGLAYYFSGDEKYAQK-----AVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEM 192 (400) Q Consensus 118 ~l~~~~~a~~~LALaw~lTGd~~YA~k-----A~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~ 192 (400) .+.........+|++|..++...|-+. .+..++ |+.+- ...+... -+...+-+. ....+ T Consensus 290 ~~~~~~~~l~~iA~aY~~~~~~~~~~~~l~~~il~~~d-~~~dq------g~~~gS~-~g~~~h~~~--------~~~~~ 353 (1022) T 2q1f_A 290 EMRAYFDLMKRIAVAYNNSEAGSPIRKEMRRKFLAMYD-HITDQ------GVAYGSC-WGNIHHYGY--------SVRGL 353 (1022) T ss_dssp BHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH-HHHHH------TCSTTCC-TTBCTTGGG--------TTTTH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHC------CCCCCCC-CCCCCCCCC--------CHHHH T ss_conf 28999999999999862778721016899999999999-99865------8545777-676456050--------12326 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCHHHHHHHHH--HHHHHHCCCHHHHHHHHHHH Q ss_conf 999999983279888789999999999999987--23136553443343107999999--98888608999999999998 Q T0588 193 IDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQ--TSPVAAEEQRAKNNHGLAYDVQL--TAYALYTGNQDLAMKTIQEF 268 (400) Q Consensus 193 ~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~--~s~~g~~~~~~~nNhg~~~~~~~--~aia~~~~d~~l~~~ai~~~ 268 (400) .+++-||++. +.+++ .+++.+ +.+.|.. .......+.+ ..|-..+....+ ++..+..+|.......+..+ T Consensus 354 ~~a~~Lm~d~--L~~~~--~l~~~~-~~~~w~~~~~~~~~~~~~~-g~~~d~~~t~~~~~l~~iLl~~d~~e~v~~l~~l 427 (1022) T 2q1f_A 354 YPAYFLMKDV--LREEG--KLLEAE-RTLRWYAITNEVYPKPEGN-GIDMDSFNTQTTGRIASILMMEDTPEKLQYLKSF 427 (1022) T ss_dssp HHHHHTTHHH--HHHTT--CHHHHH-HHHHHHTTGGGGSSCCSSS-CCCHHHHHHTHHHHHHHHHTSCSCHHHHHHHHHH T ss_pred HHHHHHHHHH--HHHHH--HHHHHH-HHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7889997876--52416--789999-9986634687133478877-5111100368999999986178869999999999 Q ss_pred HH---HH------HHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 76---21------0022201012045640457630356659999999999985283222134625547999999999863 Q T0588 269 PE---KR------LFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYI 339 (400) Q Consensus 269 ~~---~~------l~~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y~ 339 (400) .. .. ...-|.+||+.-|-. -+|..|+...|..+++++.-..--=|....+.-..|.++++-+..|. T Consensus 428 ~~~l~~~~~~~~G~~dGfy~DGSf~qH~-----~~y~gYG~~~L~g~~~~~~ll~gT~fal~~~~~~~l~~~ll~~~~~~ 502 (1022) T 2q1f_A 428 SRWIDYGCRPAPGLAGSFKVDGGAFHHR-----NNYPAYAVGGLDGATNMIYLFSRTSLAVSELAHRTVKDVLLAMRFYC 502 (1022) T ss_dssp HHHHHHHHSCCCTTCSSBCTTSCBEETT-----EECHHHHHHHHHHHHHHHHHHCSSTTCCCHHHHHHHHHHHHHHHHHS T ss_pred HHHHHCEEEECCCCCCCEECCCCEEECC-----CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9975142872678888783689777587-----87753899999999999998689987678789999999999989887 No 15 >2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomerase; 2.00A {Anabaena SP} Probab=81.79 E-value=2 Score=19.85 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=27.5 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHH---HHHHHCCC Q ss_conf 146885177655334288999999999988888-605888899999999---99874053 Q T0588 101 IRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAY-YFSGDEKYAQKAVDF---LNVWFLDA 156 (400) Q Consensus 101 ~~rdg~~nP~~~~~d~~~l~~~~~a~~~LALaw-~lTGd~~YA~kA~~i---L~aW~~~~ 156 (400) +.+||++ |+. + ..+...++-++..+.|| .++|++.|++-|.++ |..-+.++ T Consensus 39 ~d~dg~~-~~~---~-k~l~~~aR~l~~fs~ay~~l~~~~~~~~~a~~~~~fl~~~~~~~ 93 (388) T 2gz6_A 39 LDRQGKV-YDT---D-KFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDD 93 (388) T ss_dssp EBTTSCE-EEC---C-EEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCT T ss_pred ECCCCCC-CCC---C-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 7899987-898---8-63135699999999999986399889999999999999864888 No 16 >1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomerase; 2.00A {Sus scrofa} SCOP: a.102.1.3 Probab=77.10 E-value=2.8 Score=18.92 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 99999999998888860588889999999999 Q T0588 119 LGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLN 150 (400) Q Consensus 119 l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~ 150 (400) ++..+-.++.++-+|.+||++.|.+.|.+++. T Consensus 121 lY~~Af~l~ala~~~~~tg~~~~~~~a~~~~~ 152 (402) T 1fp3_A 121 IFSECFYTMAMNELWRVTAEARYQSEAVDMMD 152 (402) T ss_dssp SHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 58799999999999971388789999999999 No 17 >1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Probab=74.45 E-value=3.3 Score=18.48 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 899999999998888860588889999999999 Q T0588 118 KLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLN 150 (400) Q Consensus 118 ~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~ 150 (400) -+....+-.--|--||.+|||+.+.+||+++-+ T Consensus 167 vFEttIR~LGGLLSAY~Lsgd~~lL~kA~eLad 199 (538) T 1x9d_A 167 LFESTIRILGGLLSAYHLSGDSLFLRKAEDFGN 199 (538) T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 443318888799999997188389999999999 No 18 >1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Probab=73.96 E-value=3.1 Score=18.60 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=56.0 Q ss_pred HHHCCCHHHHHHHHHHHHH-HHCCCCCCCCCCCCHHCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 8605888899999999998-740531001455210013677777665---413689898999999999999832798887 Q T0588 133 YYFSGDEKYAQKAVDFLNV-WFLDAKTKMNPHLTYGQTIPGKNKGMG---RGAGMIDIYSFTEMIDAMTLMENSKAFTPK 208 (400) Q Consensus 133 w~lTGd~~YA~kA~~iL~a-W~~~~~T~mnP~l~yaq~~~g~~~~~g---~~~gl~~~~~~~~~~~A~~llr~~~~wt~~ 208 (400) =.+|||++|.++|.+..++ |..-....--|+|-=.-..|....-.+ ....++|+. ++.+--..|++. ..+ .. T Consensus 189 S~lTGn~~Y~~aA~~a~~aL~~~r~~~~~~~~L~g~hin~~tG~~~~~~~~~ga~~Dsf--yEYllK~~i~~g-~~~-~~ 264 (503) T 1hcu_A 189 SDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSF--YEYLIKMYLYDP-VAF-AH 264 (503) T ss_dssp HHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCCBCCCEECSSTTTHHH--HHHHHHHHHHCT-TTT-HH T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCC-CHH-HH T ss_conf 88618778999999999998604675434466412577157775347766514341259--999999997467-367-78 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCC-----------CCCCHHHHHHHHHHHHH-HHCCCHHHHHHHH Q ss_conf 899999999999999872313655-344-----------33431079999999888-8608999999999 Q T0588 209 VKKGMKEWFTQLVEWMQTSPVAAE-EQR-----------AKNNHGLAYDVQLTAYA-LYTGNQDLAMKTI 265 (400) Q Consensus 209 d~~~~~~w~~~~~~wl~~s~~g~~-~~~-----------~~nNhg~~~~~~~~aia-~~~~d~~l~~~ai 265 (400) -+..+...++..+..+... .+.. ..+ ..-.|-.|+.=++.++| ...+..+..+.|. T Consensus 265 ~~d~~~~a~~~~~~~l~~h-~~~~~~l~~i~~~~G~~~~~~mdHLacF~PGLlaLgg~~~~~~~~~~lA~ 333 (503) T 1hcu_A 265 YKDRWVLGADSTIGHLGSH-PSTRKDLTFLSSYNGQSTSPNSGHLASFGGGNFILGGILLNEQKYIDFGI 333 (503) T ss_dssp HHHHHHHHHHHHHHHTEEC-BTTCTTCCEECEEETTEEESEEEGGGGGHHHHHHHHHHHHTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 9999999999999998733-57676516610568986665520577766789998563145578999999 No 19 >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Probab=71.10 E-value=3.9 Score=17.98 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=63.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH----HHHHH---CCC---HHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999987231365534433431079999999----88886---089---9999999999876210022201012 Q T0588 213 MKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLT----AYALY---TGN---QDLAMKTIQEFPEKRLFAQIEPDGK 282 (400) Q Consensus 213 ~~~w~~~~~~wl~~s~~g~~~~~~~nNhg~~~~~~~~----aia~~---~~d---~~l~~~ai~~~~~~~l~~~i~~dG~ 282 (400) ++.....-.+||.... .....+.++||.++.-+.+ +++.. .+| .+.++++++..... | .+||+ T Consensus 556 ~~~~i~rai~yl~~~Q--~~dGsW~G~WGv~y~YgT~~aL~aL~~~G~~~~~~~~~~~v~ra~~wLls~----Q-~~DGG 628 (732) T 1w6k_A 556 IRETLTQGLEFCRRQQ--RADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSR----Q-MADGG 628 (732) T ss_dssp HHHHHHHHHHHHHHHS--CTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTT----C-CTTSC T ss_pred HHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----H-CCCCC T ss_conf 4999999999999605--778882145776400799999999998375623542489999999999987----0-88898 Q ss_pred HHHH--H---CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 0456--4---045763035665999999999998528322213462554799999999986367886567222444 Q T0588 283 QPLE--L---ARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQQIKE 353 (400) Q Consensus 283 q~~E--~---~R~~~~~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y~~~~~~~~p~~~~~~ 353 (400) ..|- + .+-.+..-+.-.-.+++.+|.++-.+. +...|.+|++|++.-. .++..||.+.+.. T Consensus 629 WGEs~~S~~~~~y~~~~~S~~~qTAWAllaLlaag~~---------~~~~i~RGi~~L~~~Q-~~~G~W~e~~~~G 694 (732) T 1w6k_A 629 WGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP---------DIEAQERGVRCLLEKQ-LPNGDWPQENIAG 694 (732) T ss_dssp CCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS---------CHHHHHHHHHHHHHHC-CTTSCCCCCSCCE T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHCC-CCCCCCCCCCCCC T ss_conf 0688555667655889999889999999999976798---------9689999999999634-7899977775111 No 20 >1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET: MAN RAM GCU MFU; 1.90A {Pedobacter heparinus} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1hm2_A* 1hm3_A* 1hmu_A* 1hmw_A* Probab=67.98 E-value=4.5 Score=17.56 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=93.6 Q ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHH-HHHHHHH Q ss_conf 99999988888605-----88889999999999874053100145521001367777766541368989899-9999999 Q T0588 123 SKAVTTLGLAYYFS-----GDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSF-TEMIDAM 196 (400) Q Consensus 123 ~~a~~~LALaw~lT-----Gd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~-~~~~~A~ 196 (400) .++...||+||... +|++-.++...-|.-|... +| ..+.|=-= .+.. -.+.+.+ T Consensus 60 ~~rl~~mA~ay~~~gs~~y~~~~l~~~i~~al~~~~~~-----~~-------------~~~NWW~~--eIG~P~~l~~~l 119 (678) T 1cb8_A 60 LLQLETIIQAYIEKDSHYYGDDKVFDQISKAFKYWYDS-----DP-------------KSRNWWHN--EIATPQALGEML 119 (678) T ss_dssp HHHHHHHHHHHHCTTSTTTTCHHHHHHHHHHHHHHHHH-----CC-------------CCSSHHHH--HTHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-----CC-------------CCCCCCHH--HHHHHHHHHHHH T ss_conf 99999999998199985648999999999999999828-----99-------------98997166--531199999999 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-- Q ss_conf 999832798887899999999999999872313655344334310799999998888608999999999998762100-- Q T0588 197 TLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYALYTGNQDLAMKTIQEFPEKRLF-- 274 (400) Q Consensus 197 ~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~~~~nNhg~~~~~~~~aia~~~~d~~l~~~ai~~~~~~~l~-- 274 (400) -||++. .++.+.+....... .+ ........+. .| .+|....++.-|++.+|.+.+..+++..... +. T Consensus 120 ~ll~~~--~~~~~~~~~~~~~~-----~~-~~~~p~~~TG-aN-~vd~a~~~~~~glL~~d~~~v~~a~~~l~~~-~~~~ 188 (678) T 1cb8_A 120 ILMRYG--KKPLDEALVHKLTE-----RM-KRGEPEKKTG-AN-KTDIALHYFYRALLTSDEALLSFAVKELFYP-VQFV 188 (678) T ss_dssp HHGGGS--SSCCCHHHHHHHHH-----TT-CCCCGGGCCH-HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSEE T ss_pred HHHCCC--CCCCCHHHHHHHHH-----HH-HCCCCCCCCC-CH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-EEEC T ss_conf 873245--55334899999999-----97-5279854567-34-9988999999998738999999999841010-7632 Q ss_pred ---HHHHHHCCHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHH Q ss_conf ---2220101204564045763035-6659999999999985283222134625547999999999 Q T0588 275 ---AQIEPDGKQPLELARTTALGYT-IFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLI 336 (400) Q Consensus 275 ---~~i~~dG~q~~E~~R~~~~~Y~-~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~ 336 (400) .-|.+||++-|- .+..|. .|+...|..+++++.....-=|... ...+..-.+|+. T Consensus 189 ~~~dGf~~DGSf~qH----~~~~Y~G~YG~~~l~~~~~~~~~l~gT~~~l~---~~~~~~l~~~i~ 247 (678) T 1cb8_A 189 HYEEGLQYDYSYLQH----GPQLQISSYGAVFITGVLKLANYVRDTPYALS---TEKLAIFSKYYR 247 (678) T ss_dssp SSSSEEETTSCEECS----SSCBCTTTHHHHHHHHHHHHHHHHTTSTTCCC---HHHHHHHHHHHH T ss_pred CCCCCEECCCCEEEC----CCEEECCCHHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHH T ss_conf 567877415636841----77433583299999999999999678977668---668999999999 No 21 >1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Probab=61.60 E-value=6 Score=16.80 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=18.4 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 9988888605888899999999998 Q T0588 127 TTLGLAYYFSGDEKYAQKAVDFLNV 151 (400) Q Consensus 127 ~~LALaw~lTGd~~YA~kA~~iL~a 151 (400) .-....-++|||.+|.+.|.++.++ T Consensus 180 LEf~~LS~lTGd~kY~~~a~~~~~~ 204 (511) T 1dl2_A 180 MEFKYLAYLTGNRTYWELVERVYEP 204 (511) T ss_dssp HHHHHHHHHHTCHHHHHHHHTTHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 9999999986863999999999999 No 22 >1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Probab=59.81 E-value=6.4 Score=16.61 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=18.4 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 8888860588889999999999874 Q T0588 129 LGLAYYFSGDEKYAQKAVDFLNVWF 153 (400) Q Consensus 129 LALaw~lTGd~~YA~kA~~iL~aW~ 153 (400) |-.+|.+|||++|-+.+.+.....+ T Consensus 50 l~~lye~Tgd~~y~~~~~~~~~~~~ 74 (373) T 1nc5_A 50 VLRLWEATGEKRYFEYAKAYADLLI 74 (373) T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHB T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 9999988399999999999999986 No 23 >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* Probab=59.38 E-value=6.5 Score=16.56 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=4.7 Q ss_pred EECHHHHHHHHH Q ss_conf 545789999999 Q T0588 26 IYAAEKLAKVKE 37 (400) Q Consensus 26 l~~~~~l~~~k~ 37 (400) |.-+..+.-++. T Consensus 18 l~~~kH~~yi~~ 29 (331) T 3dss_B 18 LLLEKHADYIAS 29 (331) T ss_dssp CCHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 889999999998 No 24 >1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein structure initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Probab=51.07 E-value=8.9 Score=15.71 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 999999999988888605888899999999 Q T0588 119 LGDMSKAVTTLGLAYYFSGDEKYAQKAVDF 148 (400) Q Consensus 119 l~~~~~a~~~LALaw~lTGd~~YA~kA~~i 148 (400) +....+-.--|--||.+|||+.+.+||+++ T Consensus 104 FEt~IR~LGGLlSAy~Ls~d~~lL~kA~dl 133 (478) T 1nxc_A 104 FEVNIRFVGGLLSAYYLSGEEIFRKKAVEL 133 (478) T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 210267662788888823887899999999 No 25 >1aa0_A Fibritin, gpwac E; coiled coil, bacteriophage T4, structural protein, bacteriophage assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1 Probab=50.60 E-value=4.1 Score=17.87 Aligned_cols=12 Identities=58% Similarity=1.135 Sum_probs=10.7 Q ss_pred CCCCCCCCCCCC Q ss_conf 877662146885 Q T0588 95 PDGLPYIRKDGQ 106 (400) Q Consensus 95 ~~g~py~~rdg~ 106 (400) .||.||+|+||+ T Consensus 94 ~DG~~Yvrkdga 105 (113) T 1aa0_A 94 RDGQAYVRKDGE 105 (113) T ss_dssp CSSCCEEEETTE T ss_pred CCCCEEEEECCC T ss_conf 777504887481 No 26 >2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprotein, glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Probab=49.13 E-value=9.5 Score=15.51 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=19.5 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 9888886058888999999999987 Q T0588 128 TLGLAYYFSGDEKYAQKAVDFLNVW 152 (400) Q Consensus 128 ~LALaw~lTGd~~YA~kA~~iL~aW 152 (400) -....-++|||++|.+.|..+.+.= T Consensus 170 EF~~LS~lTGd~kY~~~a~~~~~~l 194 (475) T 2ri9_A 170 EWTRLSDLTGDEEYAKLSQKAESYL 194 (475) T ss_dssp HHHHHHHHHSCTHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 8999999879756899999999999 No 27 >1n7o_A Hyaluronidase; protein mutant, lyase; 1.50A {Streptococcus pneumoniae} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1egu_A 1c82_A 1f9g_A* 1ojp_A* 1w3y_A* 2brp_A* 2brv_X 2brw_A 1lxk_A* 1loh_A* 1ojm_A* 1n7p_A 1ojn_A* 1n7n_A 1ojo_A* 1n7r_A* 1n7q_A* Probab=45.99 E-value=11 Score=15.21 Aligned_cols=190 Identities=11% Similarity=0.108 Sum_probs=104.7 Q ss_pred HHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 2889999999999888886-----05888899999999998740531001455210013677777665413689898999 Q T0588 116 RNKLGDMSKAVTTLGLAYY-----FSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFT 190 (400) Q Consensus 116 ~~~l~~~~~a~~~LALaw~-----lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~ 190 (400) ..++.....+...+|+||. +-+|++-.++...-|.-|.... .++. ....|.|=.- .+... T Consensus 66 sa~~~~~~~rL~~mA~ay~~pgs~ly~d~~l~~~I~~al~~l~~~~---y~~~----------~~~~gNWW~~--eIg~P 130 (721) T 1n7o_A 66 SANLTATYRKLEEMAKQVTNPSSRYYQDETVVRTVRDSMEWMHKHV---YNSE----------KSIVGNWWDY--EIGTP 130 (721) T ss_dssp THHHHHHHHHHHHHHHHHTCTTSTTTTCHHHHHHHHHHHHHHHHHT---SSTT----------CCCCSCHHHH--HTHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC---CCCC----------CCCCCCCCHH--HCCCH T ss_conf 5689999999999999983989855489999999999999999718---8889----------9877884143--22758 Q ss_pred -HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CC---CCCCCC-CCCHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf -99999999983279888789999999999999987231--36---553443-343107999999988886089999999 Q T0588 191 -EMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSP--VA---AEEQRA-KNNHGLAYDVQLTAYALYTGNQDLAMK 263 (400) Q Consensus 191 -~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~--~g---~~~~~~-~nNhg~~~~~~~~aia~~~~d~~l~~~ 263 (400) .+.++.-||++ .++++++.+..+.+.. ++.+. .+ .....+ ..| -++....++.-|++.+|.+.+.. T Consensus 131 ~~l~~~liLl~~--~l~~~~~~~~~~~i~~----~~p~p~~~~~~~~~~~~~tGaN-~~d~a~~~i~~glL~~d~~~v~~ 203 (721) T 1n7o_A 131 RAINNTLSLMKE--YFSDEEIKKYTDVIEK----FVPDPEHFRKTTDNPVKALGGN-LVDMGRVKVIAGLLRKDDQEISS 203 (721) T ss_dssp HHHHHHHHHTGG--GSCHHHHHHHHHHHHH----HCCCTTEECTTSSSCEECCHHH-HHHHHHHHHHHHHHTTCHHHHHH T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHHHHHH----HCCCHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCHHHHHH T ss_conf 999999988423--0699999999999998----6898022143567866465443-99989999999998679999999 Q ss_pred HHHHHHHHHHH-----HHHHHHCCHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHC-CCHHHCCCCCCCHHHHHHHHHHH Q ss_conf 99998762100-----2220101204564045763035-66599999999999852-83222134625547999999999 Q T0588 264 TIQEFPEKRLF-----AQIEPDGKQPLELARTTALGYT-IFNLGHMLDMCSIASTL-GQDIYNATSQDGRSITAALKFLI 336 (400) Q Consensus 264 ai~~~~~~~l~-----~~i~~dG~q~~E~~R~~~~~Y~-~~~L~~l~~~a~~a~~~-G~DL~~~~~~~g~~L~~a~ey~~ 336 (400) +++.... .+. .-|.+||++-|-. +..|. .|+...+..+++++.-. |.. |... ...+..-.+|+. T Consensus 204 ~~~~i~~-~~~~v~~gdGf~~DgSf~qH~----~~~Y~G~YG~~~l~~~~~~~~~l~gT~-~~l~---~~~~~~l~~~i~ 274 (721) T 1n7o_A 204 TIRSIEQ-VFKLVDQGEGFYQDGSYIDHT----NVAYTGAYGNVLIDGLSQLLPVIQKTK-NPID---KDKMQTMYHWID 274 (721) T ss_dssp HHHHHGG-GGSCCSSSSEECTTSCEEETT----TEECTTTHHHHHHHHHHHHHHHHTTSS-SCCC---HHHHTHHHHHHH T ss_pred HHHHHHH-HEEEECCCCCEECCCCEECCC----CEEECCHHHHHHHHHHHHHHHHHCCCC-CCCC---HHHHHHHHHHHH T ss_conf 9998765-377632687374266445158----804274789999999999999967997-7679---889999999999 No 28 >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Probab=33.60 E-value=17 Score=13.98 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 79999999998636788656722244 Q T0588 327 SITAALKFLIPYIGKPQSEWPYQQIK 352 (400) Q Consensus 327 ~L~~a~ey~~~y~~~~~~~~p~~~~~ 352 (400) .+.+|++|+..-.. ++..||.+.+. T Consensus 573 ~i~rg~~~L~~~Q~-~~G~w~~~~~~ 597 (631) T 2sqc_A 573 AARRGVQYLVETQR-PDGGWDEPYYT 597 (631) T ss_dssp HHHHHHHHHHHHCC-TTSCCCCCSCC T ss_pred HHHHHHHHHHHCCC-CCCCCCCCCCC T ss_conf 99999999997057-89998852311 No 29 >1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Probab=32.98 E-value=17 Score=13.92 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=7.3 Q ss_pred HHHHHHHHC--CCHHHHHH Q ss_conf 988888605--88889999 Q T0588 128 TLGLAYYFS--GDEKYAQK 144 (400) Q Consensus 128 ~LALaw~lT--Gd~~YA~k 144 (400) .||++..+- .|..||++ T Consensus 296 alA~as~v~k~~d~~~A~~ 314 (609) T 1ut9_A 296 TLAQSARLWKDYDPTFAAD 314 (609) T ss_dssp HHHHHHHHHTTTCHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHH T ss_conf 9998765315689999999 No 30 >1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Probab=29.51 E-value=19 Score=13.55 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHHHHCCCHH---HHH---HHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHH---HHHHH Q ss_conf 9999999888886058888---999---99999998740531001455210013677777665413689898---99999 Q T0588 122 MSKAVTTLGLAYYFSGDEK---YAQ---KAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIY---SFTEM 192 (400) Q Consensus 122 ~~~a~~~LALaw~lTGd~~---YA~---kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~---~~~~~ 192 (400) ....+..|+..+..+++.+ |.+ ++++.|.. .-+|+=...|.-|-. ......+.+.|.. .+..+ T Consensus 151 Tssei~~LA~v~~~~~~~r~~~~~~a~~rgl~~Ll~-------~Q~pdGgWpq~~p~~-~~Y~~~iT~ND~~m~~~~~~L 222 (408) T 1r76_A 151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLA-------SQFPNGGWPQVWPLE-GGYHDAITYNDDALVHVAELL 222 (408) T ss_dssp THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-------HSCTTSCCBSBSSCC-CGGGGSEECGGGHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-------HCCCCCCCCCCCCCC-CCCCCCEEECCHHHHHHHHHH T ss_conf 899999999999973864428899999999999998-------118899855205887-776663240658899999999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999832798887899999999999999872313 Q T0588 193 IDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPV 229 (400) Q Consensus 193 ~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~ 229 (400) .++++-...+...++..+.+.+.-+..-.+||+.+.. T Consensus 223 ~~~~~~~~~~~~~~~~~~~r~~~Ai~rg~d~ll~~Q~ 259 (408) T 1r76_A 223 SDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQV 259 (408) T ss_dssp HHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999606875557878899999999999999998751 No 31 >1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Probab=27.67 E-value=21 Score=13.35 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=71.8 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH------ Q ss_conf 99888886058888999999999987405310014552100136777776654136898989999999999998------ Q T0588 127 TTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLME------ 200 (400) Q Consensus 127 ~~LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr------ 200 (400) .-|+-.+..+++++|.+.+.+-++ |.+.-+ ++|=...|..|...+ .-..+...| .-|+++..||. T Consensus 81 ~fLa~~~~~~~~~~yr~a~~ra~~-wll~mQ---~~nGGWpqF~pn~~~-Yl~~IpFnD----hgma~~laLLDp~t~d~ 151 (332) T 1gxm_A 81 VFLAEVYKSGGNTKYRDAVRKAAN-FLVNSQ---YSTGALPQFYPLKGG-YSDHATFND----NGMAYALTVLDFAANKR 151 (332) T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH-HHHHHC---CTTSCCBSEESCCSG-GGGSEECGG----GHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HHHHCC---CCCCCCCCCCCCCCC-CEEEEECCC----CHHHHHHHHCCCCCCCC T ss_conf 999999883377788999999999-999531---679985432468887-011210245----20566787618765666 Q ss_pred ---HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCH-------------------HHHHHHHHHHHHHHCC Q ss_conf ---3279888789999999999999987231365--534433431-------------------0799999998888608 Q T0588 201 ---NSKAFTPKVKKGMKEWFTQLVEWMQTSPVAA--EEQRAKNNH-------------------GLAYDVQLTAYALYTG 256 (400) Q Consensus 201 ---~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~--~~~~~~nNh-------------------g~~~~~~~~aia~~~~ 256 (400) ....+.+.+..+.+.=++.-+++|+.+.... ....|-.|| |++.+. ++...+-.. T Consensus 152 s~r~ls~l~ql~~~k~~~Ai~RGieyLlrsQ~~dGsw~~~WG~qh~~ltl~Pa~~R~~E~~~lsgteSv~-~~~~lm~~~ 230 (332) T 1gxm_A 152 APFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVG-VLAFLMTQP 230 (332) T ss_dssp TTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHH-HHHHHTTSC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHCCC T ss_conf 7223876502302778999999999999866126888353034667233465334345562223313899-999984689 Q ss_pred CHHHHHHHHHH Q ss_conf 99999999999 Q T0588 257 NQDLAMKTIQE 267 (400) Q Consensus 257 d~~l~~~ai~~ 267 (400) +.+-+.++|+. T Consensus 231 ~~~~~~~aV~~ 241 (332) T 1gxm_A 231 QTAEIEQAVRA 241 (332) T ss_dssp CCHHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 86279999999 No 32 >1avy_A Fibritin, gpwac M; coiled coil, bacteriophage T4, structural protein, chaperone, bacteriophage assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1 Probab=27.27 E-value=21 Score=13.30 Aligned_cols=12 Identities=58% Similarity=1.135 Sum_probs=10.6 Q ss_pred CCCCCCCCCCCC Q ss_conf 877662146885 Q T0588 95 PDGLPYIRKDGQ 106 (400) Q Consensus 95 ~~g~py~~rdg~ 106 (400) .||..|+|+||+ T Consensus 52 ~DGqaYVRKDGe 63 (74) T 1avy_A 52 RDGQAYVRKDGE 63 (74) T ss_dssp CSSCCEEEETTE T ss_pred CCCCEEEECCCC T ss_conf 676636841782 Done!