Query T0588 ZP_02064699.1, Bacteroides ovatus ATCC 8483, 400 residues
Match_columns 400
No_of_seqs 167 out of 251
Neff 7.4
Searched_HMMs 11830
Date Mon Jul 5 09:09:32 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0588.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0588.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05426 Alginate_lyase: Algin 100.0 4.2E-40 3.6E-44 270.7 16.6 251 114-384 83-341 (345)
2 PF08124 Lyase_8_N: Polysaccha 87.9 0.55 4.6E-05 21.6 17.5 199 114-337 53-265 (324)
3 PF07470 Glyco_hydro_88: Glyco 79.4 1.3 0.00011 19.3 12.6 112 129-270 34-155 (336)
4 PF06301 Lambda_Kil: Bacteriop 77.6 1.3 0.00011 19.2 4.4 34 239-272 1-35 (43)
5 PF07944 DUF1680: Putative gly 75.5 1.6 0.00014 18.6 11.1 22 129-150 69-90 (520)
6 PF09093 Lyase_catalyt: Lyase, 72.6 1.9 0.00016 18.2 12.6 233 128-391 110-368 (373)
7 PF09403 FadA: Adhesion protei 67.0 2.5 0.00021 17.4 3.8 21 1-21 1-21 (126)
8 PF01532 Glyco_hydro_47: Glyco 66.9 2.5 0.00021 17.4 3.8 129 128-265 152-303 (453)
9 PF10022 DUF2264: Uncharacteri 65.7 2.6 0.00022 17.3 21.9 168 117-316 44-227 (361)
10 PF06662 C5-epim_C: D-glucuron 62.0 3.1 0.00026 16.8 12.8 36 120-155 30-65 (189)
11 PF07221 GlcNAc_2-epim: N-acyl 48.6 5.1 0.00043 15.5 4.2 38 119-157 80-120 (346)
12 PF07273 DUF1439: Protein of u 47.5 3.3 0.00028 16.7 1.6 34 1-35 1-34 (177)
13 PF07172 GRP: Glycine rich pro 38.7 6.3 0.00053 14.9 1.9 19 2-20 4-22 (95)
14 PF05968 Bacillus_PapR: Bacill 35.3 5.6 0.00047 15.2 1.2 10 1-10 1-10 (48)
15 PF01308 Chlam_OMP: Chlamydia 34.9 8.3 0.0007 14.1 2.2 35 1-35 1-43 (389)
16 PF10880 DUF2673: Protein of u 34.7 8.4 0.00071 14.1 3.6 37 1-37 1-40 (65)
17 PF11336 DUF3138: Protein of u 34.5 8.4 0.00071 14.1 5.2 34 1-40 1-35 (514)
18 PF06917 Pectate_lyase_2: Peri 33.1 8.9 0.00075 13.9 3.1 19 132-150 81-99 (557)
19 PF11853 DUF3373: Protein of u 32.0 9.3 0.00078 13.8 3.0 37 1-40 1-41 (489)
20 PF10731 Anophelin: Thrombin i 30.0 10 0.00084 13.6 2.1 23 1-23 1-23 (65)
21 PF03663 Glyco_hydro_76: Glyco 25.3 12 0.001 13.1 15.0 34 119-152 86-124 (369)
22 PF07437 YfaZ: YfaZ precursor; 24.9 12 0.001 13.0 2.2 20 1-20 1-20 (180)
23 PF11839 DUF3359: Protein of u 24.9 12 0.001 13.0 2.4 19 1-19 1-19 (96)
24 PF11777 DUF3316: Protein of u 23.9 13 0.0011 12.9 2.4 19 1-19 1-19 (114)
25 PF06649 DUF1161: Protein of u 23.3 13 0.0011 12.8 2.5 18 1-18 1-18 (75)
26 PF06226 DUF1007: Protein of u 22.2 14 0.0012 12.7 2.2 14 16-29 13-26 (212)
27 PF03888 MucB_RseB: MucB/RseB 20.8 14 0.0012 12.7 1.1 22 292-313 290-311 (314)
No 1
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end .; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 1hv6_A 1qaz_A.
Probab=100.00 E-value=4.2e-40 Score=270.69 Aligned_cols=251 Identities=30% Similarity=0.499 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 34288999999999988888605888899999999998740531001455210013677777665413689898999999
Q T0588 114 LDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMI 193 (400)
Q Consensus 114 ~d~~~l~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~ 193 (400)
.....+.++...++.++++|++||+++|+++|+++|++|+.+.+ .|.++.++ .|. .+-.+.+..++
T Consensus 83 ~~~~~~~~f~~~v~~~a~~y~~tg~~~~a~cal~~L~aWA~~dA-L~~~~~~~----------~g~---~~rkw~l~~~a 148 (345)
T PF05426_consen 83 AATKPIRDFEAGVAAMADAYMRTGDPAYAECALEWLRAWADADA-LLSPDANH----------TGK---YVRKWALGAMA 148 (345)
T ss_dssp HHHHHHHHHHHHHHH---HHHH---CHHHHHHHHHHHHHHHTTT-TSSS-TTS----------HHH---HHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH-HCCCCCCC----------CHH---HHHHHHHHHHH
T ss_conf 75501999999999999999864998999999999999846504-20987442----------059---99998999999
Q ss_pred HHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999832----7988878999999999999998723136553443343107999999988886089999999999987
Q T0588 194 DAMTLMENS----KAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYALYTGNQDLAMKTIQEFP 269 (400)
Q Consensus 194 ~A~~llr~~----~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~~~~nNhg~~~~~~~~aia~~~~d~~l~~~ai~~~~ 269 (400)
.++..+..+ ++|+++|.++|++||+.+++|++++..+...... |||++|+..+++++|+++||+++++.++..++
T Consensus 149 ~~~l~~~~~~~~~~~~~~~d~~~ie~Wf~~l~~~~~~~~~~~~~~~~-NNH~~w~~~qVaa~A~~l~d~~l~~~a~~~~~ 227 (345)
T PF05426_consen 149 MAYLRMKFSPSQSPAWTPQDRKAIEAWFTKLADWVITSWQGRPLKRT-NNHGYWYAWQVAAIALFLGDRDLFDWARRRYK 227 (345)
T ss_dssp HHHHTTTT-S----SS-HHHHHHHHHHHHHHH----HHHCT-------SHHHHH---HHHH---TT--HHHHH-----HH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC-CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999998640344899999999999999999741235466400012-65999999999999999289999999999999
Q ss_pred HHHHHHHHHHHCCHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 62100222010120456404-57630356659999999999985283222134625547999999999863678865672
Q T0588 270 EKRLFAQIEPDGKQPLELAR-TTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPY 348 (400)
Q Consensus 270 ~~~l~~~i~~dG~q~~E~~R-~~~~~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~y~~~~~~~~p~ 348 (400)
.. + .||.|||+||+|+.| ++++||+.|+|++|+.+|++++++|+||+ .++|.+|.++++|+++++.+|++.+.+
T Consensus 228 ~~-i-~QI~pDGslP~El~R~~ral~Ys~faL~aL~~~A~~a~~~G~DL~---~~~g~sL~~a~~fv~~~~~dp~~~~~~ 302 (345)
T PF05426_consen 228 RA-I-DQIAPDGSLPRELARGTRALHYSNFALQALVMIAEIARRNGVDLY---APNGRSLHRAADFVAPFVDDPETFPKY 302 (345)
T ss_dssp HH-----B-----BTTGGGSGGGHHHHHHHHHHHHHHHHHHHHT---------------HHHHHHHHHHHHH-GGGGGGT
T ss_pred HH-H-HHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99-9-622877888377664454348888559999999999997499765---677668999999998660294155553
Q ss_pred CC---CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 22---4445554157889999998513885789999971
Q T0588 349 QQ---IKEWDKKQEEACWILRRASFFDPKAGYEAIGAQF 384 (400)
Q Consensus 349 ~~---~~~~~~~~~~~~~~~~~aa~~~~~p~~~~~~~~~ 384 (400)
+. .........+..|+.-..++.-..+....+.+..
T Consensus 303 ~~~~Q~~~~~~~~~~~~W~~py~~~~~~~~~~~~~~~~~ 341 (345)
T PF05426_consen 303 AGERQSMEDLKKDSKLAWLEPYCARYPCHPWLPALKQEM 341 (345)
T ss_dssp --S----TT-------HHHHHHHHH----------S---
T ss_pred CCCHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 561111124466541138999998688952257775102
No 2
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 1loh_A 2brv_X 1lxk_A 1n7q_A 1n7r_A 1w3y_A 2brw_A 2brp_A 1f9g_A 1ojm_A ....
Probab=87.90 E-value=0.55 Score=21.63 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 3428899999999998888860-----58888999999999987405310014552100136777776654136898989
Q T0588 114 LDRNKLGDMSKAVTTLGLAYYF-----SGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYS 188 (400)
Q Consensus 114 ~d~~~l~~~~~a~~~LALaw~l-----TGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~ 188 (400)
.+...+.....+...+|+||.- -+|++-+++..+-|+-|+... .+|... ..|.|=- =.+.
T Consensus 53 ~~~~~~~~~~~rL~~mA~ay~~pgs~lY~d~~l~~~I~~aL~~~~~~~---y~~~~~----------~~gNWW~--~eIg 117 (324)
T PF08124_consen 53 TSSANWTTHYRRLLTMAKAYATPGSALYQDPELLKAILKALDYWYKNK---YNPGPS----------EYGNWWH--WEIG 117 (324)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSTTSTTTT-HHHHHHHHHHHHHHHHHT---SSTTS-----------TTSSHHH--HHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCC----------CCCCCCE--EECC
T ss_conf 644589999999999999984999866479999999999999999828---999888----------8899202--3567
Q ss_pred HHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999-999999998327988878999999999999998--723136553443-3431079999999888860899999999
Q T0588 189 FTE-MIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWM--QTSPVAAEEQRA-KNNHGLAYDVQLTAYALYTGNQDLAMKT 264 (400)
Q Consensus 189 ~~~-~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl--~~s~~g~~~~~~-~nNhg~~~~~~~~aia~~~~d~~l~~~a 264 (400)
... +.+..-+|+ +.+++++.....+.+..+.-.. ..+..+...... .+| -++...-++.-|++.+|.+....+
T Consensus 118 ~P~~l~~~lill~--~~l~~~~~~~~~~~i~~~~p~p~~~~~~~~~~~~~~TGaN-~vd~a~~~i~~glL~~d~~~i~~a 194 (324)
T PF08124_consen 118 IPQALGNTLILLY--DELSPEEITKYTAAIDRFVPDPTGATSSLNWDGWRRTGAN-RVDMALVVIYRGLLRGDEERIAQA 194 (324)
T ss_dssp HHHHHHHHHHHTC--GGS-HHHHHHHHHHHHHHSSGTTEESTTSSS--EE----H-HHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred CHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 5699999998840--4069999999999999768995224455556776674348-999999999999980899999999
Q ss_pred HHHHHHHHHH-----HHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9998762100-----222010120456404576303566599999999999852832221346255479999999998
Q T0588 265 IQEFPEKRLF-----AQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIP 337 (400)
Q Consensus 265 i~~~~~~~l~-----~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~~G~DL~~~~~~~g~~L~~a~ey~~~ 337 (400)
++.... .+. .-|..||++-|-.. ++ .--.|+...+..++++......-=|.+ ....+..-.+|+..
T Consensus 195 ~~~i~~-v~~~v~~gdGfy~DgSFiQH~~--~~-Y~G~YG~~~l~~~~~~~~~~~gT~~~~---~~~~~~~l~~~i~~ 265 (324)
T PF08124_consen 195 RDAISD-VFPYVTSGDGFYADGSFIQHGN--VP-YTGSYGNVLLKGLAQIFYLLAGTPWAI---SDEQIDILYDWILD 265 (324)
T ss_dssp HHHHGG-GCS-BSS----BTTS--EETTT--EE--SS----TTTHHHHHHHHHHTTSTT------HHHHHHHHHHHHH
T ss_pred HHHHHH-HEEECCCCCCEECCCCCCCCCC--CE-ECCCHHHHHHHHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHH
T ss_conf 998764-5200057986606787024888--23-577129999999999999977998878---97899999999998
No 3
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases .; PDB: 2gh4_A 2d8l_A 1nc5_A 2ahf_A 2ahg_B 2fv0_B 2fv1_B 1vd5_A 2fuz_A 2d5j_A ....
Probab=79.40 E-value=1.3 Score=19.34 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=51.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 88888605888899999999998740531001455210013677777665413689898999999999999832798887
Q T0588 129 LGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPK 208 (400)
Q Consensus 129 LALaw~lTGd~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~~wt~~ 208 (400)
|..+|.+|||++|.+.|.+......-.... ....++-..+.. ++..+++.
T Consensus 34 l~~~y~~Tgd~~y~~~a~~~~~~~~~~~~~------------~~~~D~~~~G~~---------~~~ly~~t--------- 83 (336)
T PF07470_consen 34 LWLLYEATGDPKYLEYAEKWADRLIWEDGN------------DYNLDNHDIGFL---------YLELYELT--------- 83 (336)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHT------------TTSGCSST---T---------CHHHHHHH---------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCC------------CCCCCCHHHHHH---------HHHHHHHH---------
T ss_conf 999999979999999999999998724388------------787764013999---------99999875---------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999999999872313655344----3343107999------9999888860899999999999876
Q T0588 209 VKKGMKEWFTQLVEWMQTSPVAAEEQR----AKNNHGLAYD------VQLTAYALYTGNQDLAMKTIQEFPE 270 (400)
Q Consensus 209 d~~~~~~w~~~~~~wl~~s~~g~~~~~----~~nNhg~~~~------~~~~aia~~~~d~~l~~~ai~~~~~ 270 (400)
....+++.....+++++.+........ ..+...+|.+ -.++-.+..++|++..+.++..+..
T Consensus 84 gd~~y~~~a~~~a~~~l~~~~~~~~G~f~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~~~A~~q~~~ 155 (336)
T PF07470_consen 84 GDERYKKAALQAADWLLARFPRTEDGGFWHKDPYPNWMWIDGLYMNLPFLAWAGKITGDPKYLDEAVKQFDT 155 (336)
T ss_dssp --HHHHHHHHHHHHHHHTTCTT------BSTTGGCCEEECCHHH-HCHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999999999999987378777885520688764145421764799999999997987999999999999
No 4
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences from both phages and bacteria. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of the lambda kil gene .
Probab=77.58 E-value=1.3 Score=19.19 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=24.7
Q ss_pred CHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 31079999-99988886089999999999987621
Q T0588 239 NHGLAYDV-QLTAYALYTGNQDLAMKTIQEFPEKR 272 (400)
Q Consensus 239 Nhg~~~~~-~~~aia~~~~d~~l~~~ai~~~~~~~ 272 (400)
||..-..+ .-++||.|+||.+++.+|++.++...
T Consensus 1 ~~~~L~aaQsk~~IA~flgD~~mw~eA~e~~k~ai 35 (43)
T PF06301_consen 1 MHQKLMAAQSKAAIARFLGDEKMWREANEALKTAI 35 (43)
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 90789999989999999755788999999999997
No 5
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=75.50 E-value=1.6 Score=18.65 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=11.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8888860588889999999999
Q T0588 129 LGLAYYFSGDEKYAQKAVDFLN 150 (400)
Q Consensus 129 LALaw~lTGd~~YA~kA~~iL~ 150 (400)
++.+++.|+|++.-+++.++++
T Consensus 69 ~a~~~~~~~d~~l~~~~d~~V~ 90 (520)
T PF07944_consen 69 AAYAYASTGDPELKAKADYIVD 90 (520)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999887889899999999999
No 6
>PF09093 Lyase_catalyt: Lyase, catalytic; InterPro: IPR015177 This domain is predominantly found in chondroitin ABC lyase I, adopting a helical structure, with fifteen alpha-helices which are at least two turns long and several short helical turns. The bulk of the domain is formed by ten alpha-helices forming five hairpin-like pairs and arranged into an incomplete toroid, the (alpha/alpha)5 fold. Additionally, two long and two short alpha-helices at the N terminus of the domain wrap around the toroid. At the C-terminal end of the toroid there is one additional short alpha-helix. This domain is required for degradation of polysaccharides containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucoronosyl or 1,3-alpha-L-iduronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups . ; PDB: 1hn0_A 2q1f_B.
Probab=72.57 E-value=1.9 Score=18.19 Aligned_cols=233 Identities=18% Similarity=0.223 Sum_probs=109.1
Q ss_pred HHHHHHHHCCCHHHHHHHH----HHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888886058888999999----999987405310014552100136777776654136898989999999999998327
Q T0588 128 TLGLAYYFSGDEKYAQKAV----DFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSK 203 (400)
Q Consensus 128 ~LALaw~lTGd~~YA~kA~----~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~ 203 (400)
..+.+|..+.+..--+... .+.+ ++.| -|-+.+++.++.--.|...-.+-.|+-|||+.
T Consensus 110 ~ia~a~~~~~~~~~~~e~~~~~~~~~d-y~~D---------------QG~a~GS~lgt~hH~gY~~r~~y~a~fLMrd~- 172 (373)
T PF09093_consen 110 NIAYAYNNSTDAAQRQELKQKYLLMFD-YLLD---------------QGFAYGSGLGTIHHYGYSTRGYYTAAFLMRDV- 172 (373)
T ss_dssp HHHHHHHCS-SHHHHHHHHHHHHHHHH-HHHH------------------------S--TT---TTHHHHHHHHCTHHH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHH---------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 999986502332556999988999999-9997---------------24403567441001103120188899998999-
Q ss_pred CCC-HHHHHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHH------
Q ss_conf 988-8789999---99999999998723136553443343107999999--98888608999999999998762------
Q T0588 204 AFT-PKVKKGM---KEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQL--TAYALYTGNQDLAMKTIQEFPEK------ 271 (400)
Q Consensus 204 ~wt-~~d~~~~---~~w~~~~~~wl~~s~~g~~~~~~~nNhg~~~~~~~--~aia~~~~d~~l~~~ai~~~~~~------ 271 (400)
+. ....+.. -.|+..+-.=.. ........|-+.++.... +++.+.+.|...-.+.+..|..-
T Consensus 173 -L~~~~~l~~~~~tl~Wys~~~~~~~-----~~~~~~~~~~D~~nT~l~~~l~siLl~pd~~ekv~~L~~f~~Wl~~~l~ 246 (373)
T PF09093_consen 173 -LREAGLLDRVIDTLRWYSAFGEIFQ-----PDPEINGSNLDIFNTLLMGRLASILLMPDEPEKVRYLKGFSRWLDYSLR 246 (373)
T ss_dssp -HHHTT-HHHHHHHHHHHGCCHHHHT-----S---TTTT-HHHHHHTHHHHHHHHHTSSSHHHHHHHHHHHHHHHH---S
T ss_pred -HHHCCHHHHHHHHHHHHHHHCCEEE-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf -9865006899999999997266341-----5877787415889888999999997599809999999999999855104
Q ss_pred ---HHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC-CCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---100222010120456404576303566599999999999852-8322213462554799999999986367886567
Q T0588 272 ---RLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTL-GQDIYNATSQDGRSITAALKFLIPYIGKPQSEWP 347 (400)
Q Consensus 272 ---~l~~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~a~~a~~~-G~DL~~~~~~~g~~L~~a~ey~~~y~~~~~~~~p 347 (400)
-+.+.|+|||.--+- .-+|..|+-.++..++++.+-. |.. |....+.-.+|++++.-+.-|... ..||
T Consensus 247 ~s~G~~GgfKpDGt~FHH-----~~~YpAYa~~a~~~~~~~iylLsgT~-F~Ls~~a~~~LK~all~mr~y~n~--~~~~ 318 (373)
T PF09093_consen 247 PSPGLAGGFKPDGTTFHH-----RGFYPAYATGAFKGAAQVIYLLSGTP-FALSQEAHENLKKALLAMRIYSNK--YQWP 318 (373)
T ss_dssp ---------------ECT-----TEE-HHHHHHHHHHHHHHHHHHTTST-T---HHHHHHHHHHHHHHHHCSSS--SC--
T ss_pred CCCCCCCCCCCCCCEECC-----CCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHCC--CCCC
T ss_conf 488867877788770447-----78673067777500788888854997-535889999999999999977544--6666
Q ss_pred CCCC--CCCCC-CHHHHHH-HHHHHHHHCC--CHHHHHHHHHHCCCCCCH
Q ss_conf 2224--44555-4157889-9999985138--857899999717788533
Q T0588 348 YQQI--KEWDK-KQEEACW-ILRRASFFDP--KAGYEAIGAQFRETPANK 391 (400)
Q Consensus 348 ~~~~--~~~~~-~~~~~~~-~~~~aa~~~~--~p~~~~~~~~~~~~~~~~ 391 (400)
.--. .++.+ ....... .-+-|--|.+ +++..+++.++-..+.+.
T Consensus 319 ~~lSGRhP~g~~~~~~~~~aya~mAlag~p~~D~~lAaaYLrL~~~~~~~ 368 (373)
T PF09093_consen 319 LSLSGRHPFGSSSLKLIPPAYAYMALAGTPDVDKELAAAYLRLVDKPSSE 368 (373)
T ss_dssp GCC----TTS--BGGGGHHHHHHHHTTSTTS--HHHHHHHHHHCT--HHH
T ss_pred CCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 54566689998301025588899983799998978999999984589972
No 7
>PF09403 FadA: Adhesion protein FadA; PDB: 3etz_A 3etx_C 2gl2_A 3ety_A 3etw_A.
Probab=67.04 E-value=2.5 Score=17.45 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 926899999999988754204
Q T0588 1 MKNLLVCTLLFAYAFTLNAQV 21 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~~~ 21 (400)
|||+++|.+|..+++++++..
T Consensus 1 MKKi~L~~ml~lss~sfAa~~ 21 (126)
T PF09403_consen 1 MKKILLCGMLLLSSLSFAATA 21 (126)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 905899999999999976224
No 8
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides . The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 1nxc_A 1g6i_A 1dl2_A 1fo2_A 1fmi_A 1fo3_A 1x9d_A 2ri9_B 1krf_A 2ri8_A ....
Probab=66.91 E-value=2.5 Score=17.43 Aligned_cols=129 Identities=10% Similarity=0.069 Sum_probs=60.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCC-C---CCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888886058888999999999987405-3---10014552100136777776654136898989999999999998327
Q T0588 128 TLGLAYYFSGDEKYAQKAVDFLNVWFLD-A---KTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSK 203 (400)
Q Consensus 128 ~LALaw~lTGd~~YA~kA~~iL~aW~~~-~---~T~mnP~l~yaq~~~g~~~~~g~~~gl~~~~~~~~~~~A~~llr~~~ 203 (400)
-.....++|||++|.++|.++.+.-... . ..-|-|+.--.+...-... .....+..|+. .-+++..+-+..
T Consensus 152 Ef~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~GL~p~~i~~~~g~~~~~-~~~~Ga~~DS~-YEYLlK~~il~g--- 226 (453)
T PF01532_consen 152 EFTRLSQLTGDPKYFDAAERIMDVLWKSQNRTKIPGLFPNYIDPSTGQFTGS-SFSIGAGGDSF-YEYLLKQYILLG--- 226 (453)
T ss_dssp HHHHHHHH---THHHHHHHHHHHHHHCCCHGHSH----BSEEES----BS----B-----SHHH-HHHHHHHHHHCT---
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCHH-HHHHHHHHHHCC---
T ss_conf 9999999879729999999999999986522567787874673799952478-77778875059-899999987514---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCC-C-----------------CCCCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHH
Q ss_conf 98887899999999999999872313-6-----------------5534433431079999999888860-899999999
Q T0588 204 AFTPKVKKGMKEWFTQLVEWMQTSPV-A-----------------AEEQRAKNNHGLAYDVQLTAYALYT-GNQDLAMKT 264 (400)
Q Consensus 204 ~wt~~d~~~~~~w~~~~~~wl~~s~~-g-----------------~~~~~~~nNhg~~~~~~~~aia~~~-~d~~l~~~a 264 (400)
.....+++++....+-+...-. . .......-.|-+|+.-++.++|.-. ++.+..+.|
T Consensus 227 ----~~~~~~~~~~~~a~~~i~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hL~cF~~G~l~Lga~~~~~~~~~~~a 302 (453)
T PF01532_consen 227 ----GSDPSYRDMYQEAMDAIKKHLLFRPSTPSEEDLLFVGELSGGGTLSPKMDHLSCFLGGMLALGAKLFNRPEDLELA 302 (453)
T ss_dssp ----TTTHHHHHHHHHHHHHHCCCTEEEBTTTT--T-EEE-EEC-TTEEESEEEGGGGG----------TT-CHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf ----7559999999999999999975327788765447853034677568764519989998999751147976899999
Q ss_pred H
Q ss_conf 9
Q T0588 265 I 265 (400)
Q Consensus 265 i 265 (400)
.
T Consensus 303 ~ 303 (453)
T PF01532_consen 303 E 303 (453)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 9
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264)
Probab=65.72 E-value=2.6 Score=17.28 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHH
Q ss_conf 889999999999888886058------------88899999999998740531001455210013677777665413689
Q T0588 117 NKLGDMSKAVTTLGLAYYFSG------------DEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMI 184 (400)
Q Consensus 117 ~~l~~~~~a~~~LALaw~lTG------------d~~YA~kA~~iL~aW~~~~~T~mnP~l~yaq~~~g~~~~~g~~~gl~ 184 (400)
..|+-+++.-.. ++-.+.+ ..+|++..++-|.+ -.||+ +.---+. ..+..|.|+
T Consensus 44 ~~LEgf~R~l~g--~ap~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~-------GtdP~---spdyw~~--~~~~dQ~lV 109 (361)
T PF10022_consen 44 DYLEGFARPLWG--IAPWLAGGGGPDDTEEGKLRKKYIELYRKGLAN-------GTDPE---SPDYWGF--IKDYDQRLV 109 (361)
T ss_pred HHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCC---CHHHCCC--CCCCHHHHH
T ss_conf 899999989989--999996146767631100178999999999985-------26989---9133188--532126788
Q ss_pred HHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH--H
Q ss_conf 89899-99999999998327988878999999999999998723136553443343107999999988886089999--9
Q T0588 185 DIYSF-TEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYALYTGNQDL--A 261 (400)
Q Consensus 185 ~~~~~-~~~~~A~~llr~~~~wt~~d~~~~~~w~~~~~~wl~~s~~g~~~~~~~nNhg~~~~~~~~aia~~~~d~~l--~ 261 (400)
|+-.+ .-++.+-+.+ ...+++.+++++.+||+.+. +. ....|||-.+..+.-+++.-+..+.+. .
T Consensus 110 EaA~la~aL~~a~~~l--W~~L~~~~k~~v~~wL~~~~--------~~--~~~~nNWllF~~~v~~~L~~~G~~~~~~~i 177 (361)
T PF10022_consen 110 EAASLALALLRAPEQL--WDPLDEREKENVIAWLKQVR--------GI--KPPDNNWLLFRVMVEAFLKSVGGEYDEERI 177 (361)
T ss_pred HHHHHHHHHHHCHHHH--HCCCCHHHHHHHHHHHHHHC--------CC--CCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 8899999999788987--10489999999999999836--------88--999861699999999999985997778999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHH-HHHHHHCCCH
Q ss_conf 999999876210022201012045640457630356659999999-9999852832
Q T0588 262 MKTIQEFPEKRLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDM-CSIASTLGQD 316 (400)
Q Consensus 262 ~~ai~~~~~~~l~~~i~~dG~q~~E~~R~~~~~Y~~~~L~~l~~~-a~~a~~~G~D 316 (400)
+..++.. ..--..||......+|.-. +|..|+++.+..+ ++++...+.+
T Consensus 178 ~~~l~~~-----~~~Y~GdGWY~DG~~~~~D-YYns~aih~~~l~~~~~~~~~~~~ 227 (361)
T PF10022_consen 178 DYALARL-----EEWYLGDGWYGDGPGFHFD-YYNSWAIHPYLLDYAQLMGDFDPE 227 (361)
T ss_pred HHHHHHH-----HHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9999999-----9886368830379976774-315999999999999981212878
No 10
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans .; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=61.99 E-value=3.1 Score=16.85 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999999888886058888999999999987405
Q T0588 120 GDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLD 155 (400)
Q Consensus 120 ~~~~~a~~~LALaw~lTGd~~YA~kA~~iL~aW~~~ 155 (400)
.....++-.|+.||.+|||++|-+.|...|+...+-
T Consensus 30 maQG~a~s~l~RAY~~t~d~kYL~~A~~al~~f~~p 65 (189)
T PF06662_consen 30 MAQGQAISVLARAYNLTGDEKYLDAAKKALNSFKIP 65 (189)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 864159999999998148789999999998761485
No 11
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases . This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1fp3_B 2gz6_B 3gt5_A 2zbl_A 2afa_D 2rgk_C.
Probab=48.65 E-value=5.1 Score=15.47 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHCCCC
Q ss_conf 99999999998888860588889999---9999998740531
Q T0588 119 LGDMSKAVTTLGLAYYFSGDEKYAQK---AVDFLNVWFLDAK 157 (400)
Q Consensus 119 l~~~~~a~~~LALaw~lTGd~~YA~k---A~~iL~aW~~~~~ 157 (400)
++..+-+++.||- +..||+++|.+. +.++|...+-++.
T Consensus 80 ~Y~~aF~l~alA~-~~~tg~~~a~~~A~~~~~~l~~~~~d~~ 120 (346)
T PF07221_consen 80 LYDQAFALLALAE-ARATGDPEALELAEEAFEFLEEHFWDPE 120 (346)
T ss_dssp CHHHHHHHHHHHH-HHTC--TTHHHHHHHHHHHHHHHTEETT
T ss_pred HHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 2999999999999-9997898899999999999999827867
No 12
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3eyr_B.
Probab=47.49 E-value=3.3 Score=16.70 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
Q ss_conf 92689999999998875420487125457899999
Q T0588 1 MKNLLVCTLLFAYAFTLNAQVANTRIYAAEKLAKV 35 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~~~~p~ll~~~~~l~~~ 35 (400)
||+++++++++++.++.+.+. ..+-++++++++-
T Consensus 1 Mk~~~~~~l~~~~~L~gC~~~-~~ysise~eiq~~ 34 (177)
T PF07273_consen 1 MKKLLLLALILALLLTGCASL-SQYSISEQEIQQY 34 (177)
T ss_dssp ------------------CHC-CEEEE-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCC-CCEEECHHHHHHH
T ss_conf 926999999999998612556-6166879999999
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=38.70 E-value=6.3 Score=14.87 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 2689999999998875420
Q T0588 2 KNLLVCTLLFAYAFTLNAQ 20 (400)
Q Consensus 2 k~~l~~~~l~~~~~~~~~~ 20 (400)
|.||++.+||++++++.+.
T Consensus 4 k~~llL~lllA~vlliss~ 22 (95)
T PF07172_consen 4 KAFLLLGLLLAAVLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999874
No 14
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific .
Probab=35.29 E-value=5.6 Score=15.22 Aligned_cols=10 Identities=60% Similarity=0.896 Sum_probs=8.3
Q ss_pred CHHHHHHHHH
Q ss_conf 9268999999
Q T0588 1 MKNLLVCTLL 10 (400)
Q Consensus 1 mk~~l~~~~l 10 (400)
|||||+|.+|
T Consensus 1 mkk~l~~sll 10 (48)
T PF05968_consen 1 MKKLLIGSLL 10 (48)
T ss_pred CCHHHHHHHH
T ss_conf 9047885899
No 15
>PF01308 Chlam_OMP: Chlamydia major outer membrane protein; InterPro: IPR000604 The major outer membrane protein of Chlamydia contains four symmetrically spaced variable domains (VDs I to IV). This protein maintains the structural rigidity of the outer membrane and facilitates porin formation, permitting diffusion of solutes through the intracellular reticulate body membrane. It is believed to play a role in pathogenesis and possibly adhesion. Along with the lipopolysaccharide, the major out membrane protein (MOMP) makes up the surface of the elementary body cell. Disulphide bond interactions within and between MOMP molecules and other components form high molecular weight oligomers. The MOMP is the protein used to determine the different serotypes.; GO: 0005198 structural molecule activity, 0015288 porin activity, 0009279 cell outer membrane
Probab=34.88 E-value=8.3 Score=14.11 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHH--------CCCCCEEECHHHHHHH
Q ss_conf 9268999999999887542--------0487125457899999
Q T0588 1 MKNLLVCTLLFAYAFTLNA--------QVANTRIYAAEKLAKV 35 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~--------~~~p~ll~~~~~l~~~ 35 (400)
|||||...|+++...++.+ ...|.|+.+..-.+..
T Consensus 1 mkkllks~ll~aa~~sa~SLqAlPvGNPAePsl~IdGi~wEg~ 43 (389)
T PF01308_consen 1 MKKLLKSALLFAALGSASSLQALPVGNPAEPSLMIDGINWEGF 43 (389)
T ss_pred CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9478899999988612001320458998786233577663445
No 16
>PF10880 DUF2673: Protein of unknown function (DUF2673)
Probab=34.71 E-value=8.4 Score=14.10 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHH--HHHHHHC-CCCCEEECHHHHHHHHH
Q ss_conf 9268999999999--8875420-48712545789999999
Q T0588 1 MKNLLVCTLLFAY--AFTLNAQ-VANTRIYAAEKLAKVKE 37 (400)
Q Consensus 1 mk~~l~~~~l~~~--~~~~~~~-~~p~ll~~~~~l~~~k~ 37 (400)
|||+|..++++++ ++.+.+. .+...-.+..++..+..
T Consensus 1 mknllkillilafa~pvfass~q~pdpasvtttqi~amst 40 (65)
T PF10880_consen 1 MKNLLKILLILAFAAPVFASSMQMPDPASVTTTQIHAMST 40 (65)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCC
T ss_conf 9009999999997126765025589975101899987453
No 17
>PF11336 DUF3138: Protein of unknown function (DUF3138)
Probab=34.46 E-value=8.4 Score=14.07 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=20.6
Q ss_pred CHHHHHHHHHH-HHHHHHHHCCCCCEEECHHHHHHHHHHHH
Q ss_conf 92689999999-99887542048712545789999999850
Q T0588 1 MKNLLVCTLLF-AYAFTLNAQVANTRIYAAEKLAKVKEKAD 40 (400)
Q Consensus 1 mk~~l~~~~l~-~~~~~~~~~~~p~ll~~~~~l~~~k~~~~ 40 (400)
||++++|.++. +++-.+.+.+ +..++..+|.+++
T Consensus 1 mk~k~~~~lv~~alpg~a~a~~------~AaqIkaLQAQl~ 35 (514)
T PF11336_consen 1 MKKKLICALVAGALPGMAMAAS------TAAQIKALQAQLQ 35 (514)
T ss_pred CCHHHHHHHHHHHCCCCCCCCC------CHHHHHHHHHHHH
T ss_conf 9256899999850753201479------8889999999999
No 18
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls .; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2v8j_A 2v8k_A 2v8i_A.
Probab=33.09 E-value=8.9 Score=13.93 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=10.8
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q ss_conf 8860588889999999999
Q T0588 132 AYYFSGDEKYAQKAVDFLN 150 (400)
Q Consensus 132 aw~lTGd~~YA~kA~~iL~ 150 (400)
+=.+|||++|-++|.++.+
T Consensus 81 LS~lTgd~~Y~q~A~~~~~ 99 (557)
T PF06917_consen 81 LSVLTGDPKYQQRAEAQSR 99 (557)
T ss_dssp -TTT---THHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
T ss_conf 7752288889999999999
No 19
>PF11853 DUF3373: Protein of unknown function (DUF3373)
Probab=31.97 E-value=9.3 Score=13.81 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEC----HHHHHHHHHHHH
Q ss_conf 9268999999999887542048712545----789999999850
Q T0588 1 MKNLLVCTLLFAYAFTLNAQVANTRIYA----AEKLAKVKEKAD 40 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~~~~p~ll~~----~~~l~~~k~~~~ 40 (400)
||+++..+++-|+ ++.+.+..+ .-+ .++|+.+|++++
T Consensus 1 MK~~~~l~l~aal-l~~s~~~~a--~~~d~~~~qqI~~Lk~el~ 41 (489)
T PF11853_consen 1 MKKLISLILAAAL-LAASLFAKA--SAADIDLLQQIEELKKELA 41 (489)
T ss_pred CCHHHHHHHHHHH-HHHCCCCCC--CCCCHHHHHHHHHHHHHHH
T ss_conf 9228999999999-974243313--3121469999999999999
No 20
>PF10731 Anophelin: Thrombin inhibitor from mosquito
Probab=30.05 E-value=10 Score=13.61 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 92689999999998875420487
Q T0588 1 MKNLLVCTLLFAYAFTLNAQVAN 23 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~~~~p 23 (400)
|-+.|+.+.|+|..+.+-.|+.|
T Consensus 1 MA~Kl~vialLC~aLva~vQ~AP 23 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAP 23 (65)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 95102279999999999994175
No 21
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).
Probab=25.33 E-value=12 Score=13.08 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHH
Q ss_conf 999999999988888605888-----8999999999987
Q T0588 119 LGDMSKAVTTLGLAYYFSGDE-----KYAQKAVDFLNVW 152 (400)
Q Consensus 119 l~~~~~a~~~LALaw~lTGd~-----~YA~kA~~iL~aW 152 (400)
+..+..-+..+.-+|.+||++ +|.+.|.++.+.-
T Consensus 86 yDD~~w~~la~i~aye~t~~~~~~~~~yL~~A~~v~~~~ 124 (369)
T PF03663_consen 86 YDDQAWWALALIRAYELTGNEPSDQPKYLDLAKNVFNFM 124 (369)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 076999999999999986889764388999999999999
No 22
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=24.93 E-value=12 Score=13.03 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 92689999999998875420
Q T0588 1 MKNLLVCTLLFAYAFTLNAQ 20 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~~ 20 (400)
|||+++..++..+..+..++
T Consensus 1 m~k~~~~~~~~l~~~s~~a~ 20 (180)
T PF07437_consen 1 MKKFLVAAAAALLLASASAQ 20 (180)
T ss_pred CCHHHHHHHHHHHHHHHHCC
T ss_conf 90689999999997621031
No 23
>PF11839 DUF3359: Protein of unknown function (DUF3359)
Probab=24.88 E-value=12 Score=13.03 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 9268999999999887542
Q T0588 1 MKNLLVCTLLFAYAFTLNA 19 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~ 19 (400)
|||+|+.++..++.+.++-
T Consensus 1 M~~~l~s~~~~~~~L~~GC 19 (96)
T PF11839_consen 1 MKKLLISALALAALLAAGC 19 (96)
T ss_pred CCHHHHHHHHHHHHHHHHC
T ss_conf 9059999999999998572
No 24
>PF11777 DUF3316: Protein of unknown function (DUF3316)
Probab=23.88 E-value=13 Score=12.91 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 9268999999999887542
Q T0588 1 MKNLLVCTLLFAYAFTLNA 19 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~~ 19 (400)
||++++..+++.++.++.+
T Consensus 1 MKkl~ll~~~l~~s~~a~A 19 (114)
T PF11777_consen 1 MKKLILLASLLLLSSSAFA 19 (114)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9049999999998667763
No 25
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=23.29 E-value=13 Score=12.84 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 926899999999988754
Q T0588 1 MKNLLVCTLLFAYAFTLN 18 (400)
Q Consensus 1 mk~~l~~~~l~~~~~~~~ 18 (400)
||++++++.|+.+...+-
T Consensus 1 Mkk~~l~~~l~~la~~al 18 (75)
T PF06649_consen 1 MKKFLLAVALLLLAAPAL 18 (75)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 935699999999856454
No 26
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=22.24 E-value=14 Score=12.70 Aligned_cols=14 Identities=14% Similarity=-0.085 Sum_probs=9.8
Q ss_pred HHHHCCCCCEEECH
Q ss_conf 75420487125457
Q T0588 16 TLNAQVANTRIYAA 29 (400)
Q Consensus 16 ~~~~~~~p~ll~~~ 29 (400)
+..+++||..+.+.
T Consensus 13 ~~~a~AHPHvfId~ 26 (212)
T PF06226_consen 13 PAPAFAHPHVFIDA 26 (212)
T ss_pred CCCCCCCCCEEEEE
T ss_conf 52104499588974
No 27
>PF03888 MucB_RseB: MucB/RseB family; InterPro: IPR005588 The members of this family are regulators of the anti-sigma E protein RseD.; PDB: 2p4b_C 2v43_C 2v42_B.
Probab=20.78 E-value=14 Score=12.71 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 6303566599999999999852
Q T0588 292 ALGYTIFNLGHMLDMCSIASTL 313 (400)
Q Consensus 292 ~~~Y~~~~L~~l~~~a~~a~~~ 313 (400)
++.-+..+=-|..++-++|...
T Consensus 290 ~~~vTvVGEVP~~Ta~rIa~si 311 (314)
T PF03888_consen 290 DHEVTVVGEVPPATAKRIAESI 311 (314)
T ss_dssp TEEEEEE----HHHHHHHHHTE
T ss_pred CEEEEEEECCCHHHHHHHHHHC
T ss_conf 9999999558699999999744
Done!