Query T0589 3NET, Nostoc sp. PCC 7120, 465 residues Match_columns 465 No_of_seqs 146 out of 4687 Neff 11.0 Searched_HMMs 22458 Date Mon Jul 5 09:38:47 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0589.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0589.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3lc0_A Histidyl-tRNA synthetas 100.0 0 0 489.7 40.5 417 4-451 22-441 (456) 2 1qe0_A Histidyl-tRNA synthetas 100.0 0 0 462.4 32.4 413 13-462 3-420 (420) 3 1wu7_A Histidyl-tRNA synthetas 100.0 0 0 448.3 41.9 424 8-465 2-426 (434) 4 1h4v_B Histidyl-tRNA synthetas 100.0 0 0 398.1 40.7 418 10-464 1-420 (421) 5 1htt_A Histidyl-tRNA synthetas 100.0 0 0 401.9 32.9 417 11-464 3-422 (423) 6 1qf6_A THRRS, threonyl-tRNA sy 100.0 0 0 402.4 27.8 367 15-464 260-632 (642) 7 1evl_A Threonyl-tRNA synthetas 100.0 0 0 401.1 26.4 369 13-464 17-391 (401) 8 2i4l_A Proline-tRNA ligase; al 100.0 0 0 401.9 13.9 401 2-461 44-458 (458) 9 1nyr_A Threonyl-tRNA synthetas 100.0 0 0 387.8 24.2 374 13-464 258-639 (645) 10 2j3l_A Prolyl-tRNA synthetase; 100.0 0 0 375.6 15.1 445 2-465 24-566 (572) 11 3ial_A Prolyl-tRNA synthetase; 100.0 0 0 360.4 25.3 343 1-458 29-400 (518) 12 1nj1_A Proline-tRNA synthetase 100.0 0 0 360.7 23.7 343 2-464 46-412 (501) 13 1nj8_A Proline-tRNA synthetase 100.0 0 0 354.7 27.9 350 1-464 12-379 (459) 14 3a32_A Probable threonyl-tRNA 100.0 0 0 369.8 11.1 358 13-454 36-429 (471) 15 2zt5_A Glycyl-tRNA synthetase; 100.0 0 0 363.0 14.4 437 13-465 88-657 (693) 16 1hc7_A Prolyl-tRNA synthetase; 100.0 0 0 334.8 25.7 344 2-464 20-385 (477) 17 1z7m_A ATP phosphoribosyltrans 100.0 0 0 330.2 27.8 328 3-364 13-340 (344) 18 1g5h_A Mitochondrial DNA polym 100.0 0 0 344.6 7.1 364 15-464 50-437 (454) 19 1ati_A Glycyl-tRNA synthetase; 100.0 1.1E-42 0 304.5 25.9 383 3-465 11-504 (505) 20 1usy_A ATP phosphoribosyltrans 100.0 1.6E-34 7.3E-39 249.3 18.6 266 29-352 6-271 (275) 21 2cja_A Seryl-tRNA synthetase; 99.8 4.8E-21 2.2E-25 158.6 9.3 168 2-182 207-411 (522) 22 3dsq_A Pyrrolysyl-tRNA synthet 99.8 5.6E-18 2.5E-22 138.0 12.1 147 21-184 65-211 (288) 23 2dq3_A Seryl-tRNA synthetase; 99.6 2.7E-15 1.2E-19 119.9 12.5 169 5-189 146-327 (425) 24 2zin_A Pyrrolysyl-tRNA synthet 99.6 1.1E-14 4.9E-19 115.8 14.0 133 29-180 80-212 (291) 25 3err_A Fusion protein of micro 99.4 2E-12 9.1E-17 100.5 12.8 158 16-189 265-432 (536) 26 2dq0_A Seryl-tRNA synthetase; 99.3 1.3E-11 5.8E-16 95.1 11.6 168 6-189 168-348 (455) 27 3lss_A Seryl-tRNA synthetase; 99.3 5.6E-11 2.5E-15 90.8 12.7 172 4-189 180-367 (484) 28 1wle_A Seryl-tRNA synthetase; 99.3 4.9E-11 2.2E-15 91.2 12.2 162 16-190 209-380 (501) 29 1ses_A Seryl-tRNA synthetase; 99.2 3E-10 1.3E-14 85.9 12.7 159 15-189 155-323 (421) 30 3e9h_A Lysyl-tRNA synthetase; 98.7 4.4E-07 1.9E-11 64.6 12.1 113 25-163 173-285 (493) 31 3bju_A Lysyl-tRNA synthetase; 98.6 6.6E-07 2.9E-11 63.4 10.9 112 26-163 176-287 (521) 32 1e1o_A Lysyl-tRNA synthetase; 98.5 1.4E-06 6.3E-11 61.1 11.4 112 26-163 183-294 (504) 33 3g1z_A Putative lysyl-tRNA syn 98.5 1.1E-06 5E-11 61.8 9.6 122 25-173 16-137 (326) 34 1c0a_A Aspartyl tRNA synthetas 98.4 3.6E-06 1.6E-10 58.4 11.6 112 25-163 137-249 (585) 35 1eov_A ASPRS, aspartyl-tRNA sy 98.4 5.2E-06 2.3E-10 57.4 12.2 100 26-153 178-278 (487) 36 1wyd_A Hypothetical aspartyl-t 98.4 6.6E-06 2.9E-10 56.7 12.7 105 25-158 133-238 (429) 37 1nnh_A Asparaginyl-tRNA synthe 98.3 8E-06 3.6E-10 56.1 10.9 109 25-155 14-126 (294) 38 1x54_A Asparaginyl-tRNA synthe 98.3 1.1E-05 4.7E-10 55.3 11.2 105 25-158 134-239 (434) 39 1l0w_A Aspartyl-tRNA synthetas 98.3 1.1E-05 5E-10 55.1 11.3 111 26-163 144-255 (580) 40 3i7f_A Aspartyl-tRNA synthetas 98.3 1.4E-05 6E-10 54.6 11.5 100 26-153 244-344 (548) 41 2du3_A O-phosphoseryl-tRNA syn 98.2 4.5E-05 2E-09 51.1 13.4 174 4-183 26-265 (534) 42 3m4p_A Ehasnrs, asparaginyl-tR 98.2 3.3E-05 1.5E-09 51.9 11.8 107 26-161 156-263 (456) 43 1b8a_A Protein (aspartyl-tRNA 98.1 2.8E-05 1.2E-09 52.5 10.9 101 26-154 137-238 (438) 44 2du7_A O-phosphoseryl-tRNA syn 98.1 5.1E-05 2.3E-09 50.7 12.2 171 5-181 37-275 (549) 45 3l4g_A Phenylalanyl-tRNA synth 98.1 0.0002 9E-09 46.7 15.0 129 26-154 224-381 (508) 46 1n9w_A Aspartyl-tRNA synthetas 98.1 1.9E-05 8.3E-10 53.6 8.7 96 25-151 124-222 (422) 47 1v95_A Nuclear receptor coacti 98.0 0.0001 4.5E-09 48.7 11.4 96 368-463 5-104 (130) 48 1b7y_A Phers, protein (phenyla 98.0 0.0003 1.3E-08 45.5 13.1 137 26-179 100-248 (350) 49 2odr_A Phosphoseryl-tRNA synth 97.8 0.0012 5.5E-08 41.4 14.1 87 93-183 197-284 (665) 50 2rhq_A Phenylalanyl-tRNA synth 97.8 0.001 4.5E-08 41.9 13.2 132 7-155 35-167 (294) 51 2odr_C Phosphoseryl-tRNA synth 97.6 0.00069 3.1E-08 43.1 10.5 87 94-184 198-285 (701) 52 2odr_B Phosphoseryl-tRNA synth 97.5 0.0015 6.7E-08 40.8 11.0 88 93-184 197-285 (648) 53 2odr_D Phosphoseryl-tRNA synth 97.5 0.0015 6.8E-08 40.7 11.0 88 93-184 197-285 (685) 54 3ica_A Phenylalanyl-tRNA synth 97.5 0.0038 1.7E-07 38.1 13.1 111 29-154 6-123 (213) 55 3ig2_A Phenylalanyl-tRNA synth 97.3 0.0041 1.8E-07 37.9 11.1 109 29-152 6-121 (213) 56 2rhq_B Phenylalanyl-tRNA synth 95.0 0.15 6.8E-06 27.3 8.8 89 29-133 495-584 (795) 57 1b7y_B Phers, protein (phenyla 94.4 0.15 6.9E-06 27.2 7.4 107 9-132 471-579 (785) 58 3cmq_A Phenylalanyl-tRNA synth 93.8 0.28 1.2E-05 25.5 8.5 112 31-152 52-164 (415) 59 3h16_A TIR protein; bacteria T 81.0 1.5 6.6E-05 20.6 4.1 60 371-430 20-83 (154) 60 1jfu_A Thiol:disulfide interch 72.0 3.1 0.00014 18.5 3.6 87 369-465 91-180 (186) 61 3lwa_A Secreted thiol-disulfid 69.3 4.2 0.00018 17.6 7.1 85 369-464 96-180 (183) 62 1lu4_A Soluble secreted antige 55.0 7.4 0.00033 15.9 7.0 82 371-465 55-136 (136) 63 3kcm_A Thioredoxin family prot 47.5 9.6 0.00043 15.2 8.2 84 370-465 60-143 (154) 64 2jwk_A Protein TOLR; periplasm 46.7 9.9 0.00044 15.1 4.9 26 375-400 48-74 (74) 65 2bon_A Lipid kinase; DAG kinas 43.2 11 0.0005 14.7 5.9 30 423-452 288-317 (332) 66 1lxj_A YBL001C, hypothetical 1 41.0 12 0.00054 14.5 8.7 82 372-465 8-103 (104) 67 1vb5_A Translation initiation 39.1 12 0.00052 14.6 1.9 43 371-416 135-177 (276) 68 2ywn_A Peroxiredoxin-like prot 38.8 13 0.00058 14.3 3.9 87 369-463 62-156 (157) 69 1zzo_A RV1677; thioredoxin fol 38.1 13 0.00059 14.2 6.2 53 399-465 83-135 (136) 70 2ztg_A Alanyl-tRNA synthetase; 36.5 14 0.00063 14.0 6.9 28 29-56 62-89 (739) 71 3ecs_A Translation initiation 36.2 13 0.00058 14.3 1.8 10 280-289 165-174 (315) 72 1yqh_A DUF77, IG hypothetical 35.7 15 0.00065 14.0 7.5 81 372-464 10-103 (109) 73 3a1c_A Probable copper-exporti 33.2 16 0.00071 13.7 4.3 51 374-425 155-205 (287) 74 2jxj_A Histone demethylase jar 30.9 17 0.00077 13.4 2.0 33 22-55 1-33 (96) 75 1xov_A PLY protein, plypsa; al 30.1 18 0.00079 13.4 5.4 26 25-50 35-60 (326) 76 1req_A Methylmalonyl-COA mutas 29.2 18 0.00082 13.3 3.2 53 374-426 651-704 (727) 77 1lxn_A Hypothetical protein MT 29.1 18 0.00082 13.2 9.0 81 372-464 4-99 (99) 78 2b5x_A YKUV protein, TRXY; thi 26.3 21 0.00092 12.9 5.1 64 389-465 80-145 (148) 79 2dlx_A UBX domain-containing p 25.2 22 0.00096 12.8 6.1 66 389-464 69-135 (153) 80 2zkr_f 60S ribosomal protein L 25.0 22 0.00097 12.8 1.6 24 371-394 199-222 (266) 81 2zv3_A PTH, peptidyl-tRNA hydr 24.8 22 0.00098 12.7 2.7 34 409-442 61-96 (115) 82 2ibo_A Hypothetical protein SP 24.7 22 0.00099 12.7 7.8 76 372-462 5-93 (104) 83 1ykg_A SIR-FP, sulfite reducta 24.0 23 0.001 12.6 3.2 27 372-398 94-124 (167) 84 3fkf_A Thiol-disulfide oxidore 22.7 24 0.0011 12.5 5.2 78 372-464 68-145 (148) No 1 >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural genomics; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hrj_A* 3hri_A Probab=100.00 E-value=0 Score=489.74 Aligned_cols=417 Identities=24% Similarity=0.385 Sum_probs=359.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHH Q ss_conf 21024654015785211582679999999999999999739925006543326776311563102343433202011122 Q T0589 4 MAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQA 83 (465) Q Consensus 4 ~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~ 83 (465) |.| .++.+|+|+||+||+|.|++++++|++.|+++|+++||++|.||+|++.++|..|+|. ...+ T Consensus 22 ~~~-~~~~~~~~~G~~D~lP~~~~~~~~i~~~i~~~~~~~Gy~eV~TP~le~~~l~~~~~g~--------------~~~~ 86 (456) T 3lc0_A 22 MQK-NMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGE--------------EITE 86 (456) T ss_dssp ----CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC--------------HHHH T ss_pred HHH-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCC--------------CCHH T ss_conf 333-5567899999866698899999999999999999869959788652628774446786--------------1124 Q ss_pred HCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 13554478885578547760999999999875157745157752400266777775300000000135257521789999 Q T0589 84 EKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 84 ~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) +||.|.|++|+.++||||+|++++|+++.+..+...|.++||+|++||+++++.+|.|||+|+++++++... ...++| T Consensus 87 ~my~f~D~~g~~l~LRpD~T~~~aR~~~~~~~~~~~~~r~~y~g~v~R~e~~~~g~~re~~q~~~eiig~~~--~~~~~e 164 (456) T 3lc0_A 87 QMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKS--VSAEVE 164 (456) T ss_dssp TCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCS--THHHHH T ss_pred HEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCHHHHCCHHHCCCCC--HHHHHH T ss_conf 206778699988963786729999999961000467736887455784158888872332311111047751--667788 Q ss_pred HHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999997399--8259997276889999987245103799999998633005857899888743889889999986 Q T0589 164 MPAIITEIFEAVNI--GDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIID 241 (465) Q Consensus 164 ~i~~~~e~~~~lgl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (465) ++.++.+.+..+|+ ..+.++++|..++..++..++.++.....+...++......++.+...+......+........ T Consensus 165 ~i~l~~~~~~~lg~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 244 (456) T 3lc0_A 165 LVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITT 244 (456) T ss_dssp HHHHHHHHHHHTTCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 87666655543277554310000058898877765153076789999999865322688889998763775777887641 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCC Q ss_conf 41257888899999998874311125678888889999999986089866323143340674001253788633365544 Q T0589 242 FVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEAL 321 (465) Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~ 321 (465) ...... .......+ ......+......+......+. ...+.+|++++++++||+|++|+.+..... . T Consensus 245 ~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~i~iD~~~~rg~~YYtG~vFe~~~~~~~-~ 311 (456) T 3lc0_A 245 TLSLKS-IDEIAQRV----------GEEHEAVKELRQFFEQVEAYGY-GDWVLFDASVVRGLAYYTGIVFEGFDREGK-F 311 (456) T ss_dssp HHTCCS-HHHHHHHH----------CTTCHHHHHHHHHHHHHHHHTC-GGGEEECTTCCCSCTTCCSEEEEEEETTSC-S T ss_pred HHHHCH-HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCEEEEEECCCC-C T ss_conf 110010-78888765----------4443458999999999986178-956997550246861545752689945775-3 Q ss_pred CCCCCCCCCCCCHHHHCCC-CCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCE Q ss_conf 4400477543210320136-534485220035789998742024555568702899846878999999999999876985 Q T0589 322 GSICSGGRYEELVGTFIGE-KMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLN 400 (465) Q Consensus 322 ~~i~~ggryd~li~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~ 400 (465) .++++|||||+|++.+++. .+||+|++++.++...++... ..+|.|++|+||+|+|++++...+|.+|+++||++||+ T Consensus 312 ~~i~~GGRYD~Li~~~~~~~~~pavGfsi~ier~~~~l~~~-g~~p~~~~p~~v~Vi~i~~~~~~~a~~v~~~Lr~~Gir 390 (456) T 3lc0_A 312 RALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEK-RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRS 390 (456) T ss_dssp SCSEEEEECSSHHHHTTCSSCCCEEEEEEESSHHHHHHHHT-TCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCC T ss_pred CCEECCCCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHHC-CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC T ss_conf 42225876430688847877666105886099999999973-88877666532899987879999999999999977998 Q ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEE Q ss_conf 999728989778999999658979999860234388289998588865871 Q T0589 401 VITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEV 451 (465) Q Consensus 401 v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v 451 (465) |++|.+++++++|+++|++.|+||+|+||.+|+++|+|+||++.||+|+.. T Consensus 391 veid~~~~~l~kkir~A~~~~~p~~liiG~~E~~~~~v~vR~l~~g~~~~~ 441 (456) T 3lc0_A 391 ADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEE 441 (456) T ss_dssp EEECCSCCCHHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------- T ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCCEEE T ss_conf 999518999999999999879899999853387689789998998974032 No 2 >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Probab=100.00 E-value=0 Score=462.42 Aligned_cols=413 Identities=23% Similarity=0.379 Sum_probs=319.8 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCC Q ss_conf 15785211582679999999999999999739925006543326776311563102343433202011122135544788 Q T0589 13 STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTG 92 (465) Q Consensus 13 ~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 92 (465) +.|+||+||+|.|++++++|++.|+++|.++||++|.||+|++.++|.++.+. ++....++||++.|++ T Consensus 3 ~lP~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~~I~tP~ie~~dl~~~~~g~-----------~~~~~~~~mf~~~D~~ 71 (420) T 1qe0_A 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGD-----------STDVVQKEMYTFKDKG 71 (420) T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC----------------------CCEEECHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCC-----------CCCHHHHHCCCEECCC T ss_conf 88998866598799999999999999999859979999500418773455676-----------2003567506526699 Q ss_pred CCEEEECCCCHHHHHHHHHHHH-HHCC-CCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 8557854776099999999987-5157-7451577524002667777753000000001352575217899999999999 Q T0589 93 SEARALKFDQTVPLAAYIARHL-NDLT-FPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE 170 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~-~~~~-~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e 170 (465) |+.++||||+|++++|+++.+. .++. .|+|+||+|++||+++++.+|.|||+|+++|+||.+. ..+|+|++.++.+ T Consensus 72 g~~l~Lrpd~t~~~~r~~~~~~~~s~~~lP~r~~~~g~vfR~e~~~~~r~Ref~Q~~~ei~g~~~--~~~d~E~i~~~~~ 149 (420) T 1qe0_A 72 DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAEN--PSVDAEVLAMVMH 149 (420) T ss_dssp HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCC--HHHHHHHHHHHHH T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCEEEEEEECCHHHCCCC--CHHHHHHHHHHHH T ss_conf 98783278888298999999877525677648988753798336678851367762211204766--1478999999999 Q ss_pred HHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH Q ss_conf 99973998259997276889999987245103799999998633005857899888743889889999986412578888 Q T0589 171 IFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVD 250 (465) Q Consensus 171 ~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (465) ++..+|+..+.+.++|...+.......... .. ............+ .......+ +........ T Consensus 150 ~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~ 211 (420) T 1qe0_A 150 IYQSFGLKHLKLVINSVGDMASRKEYNEAL---VK----HFEPVIHEFCSDC---QSRLHTDP--------MRILDCKVD 211 (420) T ss_dssp HHHHTTCCCEEEEEEECCCHHHHHHHHHHH---HH----HHGGGGGGSCHHH---HHTTTTCG--------GGGC----- T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHH---HH----HHHHHHHHHHHHH---HHHHHCCH--------HHHHHHHCC T ss_conf 998708756515761457688877788888---88----8888877666766---43430032--------666543030 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCC---CCCCCCCC Q ss_conf 999999988743111256788888899999999860898663231433406740012537886333655---44440047 Q T0589 251 DVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHE---ALGSICSG 327 (465) Q Consensus 251 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~---~~~~i~~g 327 (465) .....+....... .................+...++ .+.++++++++++||||++|+.+..... ....+++| T Consensus 212 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~---~~~~d~~~~~~~~yytg~~fe~~~~~~~~~~~~~~i~~g 286 (420) T 1qe0_A 212 RDKEAIKTAPRIT--DFLNEESKAYYEQVKAYLDDLGI---PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGG 286 (420) T ss_dssp -------CCCCGG--GCCCTTHHHHHHHHHHHHHHHTC---CCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEE T ss_pred HHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC T ss_conf 4578987504423--11114677778889988887654---100155433255455653788861466654442100475 Q ss_pred CCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 75432103201365344852200357899987420245555687028998468789999999999998769859997289 Q T0589 328 GRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEK 407 (465) Q Consensus 328 gryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~ 407 (465) ||||+++..+.+...|+++++++..+......... .++.+..+++|+|++.+++...+|.+|+++||++||+|++|+++ T Consensus 287 grYd~l~~~~~g~~~~~~g~~~~l~~~~~~~~~~~-~~~~~~~~~~v~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~ 365 (420) T 1qe0_A 287 GRYNGLLELLDGPSETGIGFALSIERLLLALEEEG-IELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQ 365 (420) T ss_dssp EEEESHHHHTTCCCCEEEEEEEEHHHHHHHHHHTT-CCCCCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSC T ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 00123456535876434440106999999999718-88654667618998277699999999999999879969993499 Q ss_pred CCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHH Q ss_conf 8977899999965897999986023438828999858886587148999999999 Q T0589 408 RQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKR 462 (465) Q Consensus 408 ~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~ 462 (465) +++|+|+++|++.|+||+|+||++++++|+||||||+|++|..|+++|++++||+ T Consensus 366 ~~l~kkir~A~~~~~p~~iiiG~~E~~~~~v~vr~~~~~~q~~v~~~el~~~ikk 420 (420) T 1qe0_A 366 RKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420 (420) T ss_dssp CCHHHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHHC T ss_pred CCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHCC T ss_conf 9999999999987979999986627767979999999996489649999999629 No 3 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Probab=100.00 E-value=0 Score=448.29 Aligned_cols=424 Identities=25% Similarity=0.410 Sum_probs=356.7 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCC Q ss_conf 46540157852115826799999999999999997399250065433267763115631023434332020111221355 Q T0589 8 DKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDK 87 (465) Q Consensus 8 ~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~ 87 (465) .+|++|+||||+||+|.|+.++++|++.++++|.++||++|.||+|++.++|..++|. ...++||+ T Consensus 2 ~~~~~~~~~G~~d~lP~g~~~~~~l~~~i~~~~~~~Gy~eV~tP~ie~~dl~~~~~g~--------------~~~~~m~~ 67 (434) T 1wu7_A 2 YRLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--------------ELLQQTYS 67 (434) T ss_dssp -CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--------------TGGGGSCE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCC--------------HHHHHHCE T ss_conf 8666689998753598799999999999999999869969888632507650657764--------------23453123 Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 44788855785477609999999998751577451577524002667777753000000001352575217899999999 Q T0589 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI 167 (465) Q Consensus 88 ~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~ 167 (465) +.|++|+.++||||+|++++|..+.+. ....|.|+||+|.+||++.++..+.|++.|+++++++.+. ..++++.+.+ T Consensus 68 ~~d~~g~~l~Lrpd~t~~~~r~~~~~~-~~~~p~r~~~~g~v~R~~~~~~~~~r~~~q~~~e~~g~~~--~~~~~e~~~~ 144 (434) T 1wu7_A 68 FVDKGGREVTLIPEATPSTVRMVTSRK-DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDS--PEADAEVIAL 144 (434) T ss_dssp EECTTSCEEEECSCSHHHHHHHHTTCT-TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCS--HHHHHHHHHH T ss_pred EECCCCCEECCCCCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHH T ss_conf 345899784237676879999987500-2344433202475100021232320200001411356653--2014666667 Q ss_pred HHHHHHHCCC-CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 9999997399-825999727688999998724510379999999863300585789988874388988999998641257 Q T0589 168 ITEIFEAVNI-GDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKID 246 (465) Q Consensus 168 ~~e~~~~lgl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (465) +.+.+..+++ ....+.++|..++..++..++... ........+.......+.....+...+........+.++.... T Consensus 145 ~~~~~~~~~~~~~~~i~~~~~~i~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 222 (434) T 1wu7_A 145 ASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSD--PFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGT 222 (434) T ss_dssp HHHHHHHTTTTTSEEEEEEEHHHHHHHHHTTCSSC--HHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSC T ss_pred HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC T ss_conf 77652024663000242031577999986420355--6678888888865435667777640120036788898874020 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCC Q ss_conf 88889999999887431112567888888999999998608986632314334067400125378863336554444004 Q T0589 247 GSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICS 326 (465) Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ 326 (465) ........... .....+..+..+.......++. .+.+|++++++++||+|++|+.+... +...++++ T Consensus 223 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~i~~D~~~~~gl~y~tg~~fe~~~~~-~~~~~i~~ 289 (434) T 1wu7_A 223 RGIDEMARITG----------KSSEEIARMAAVEDLLASYGVK--NVRYDFSIVRGLSYYTGIVFEAYDRS-GQFRAILG 289 (434) T ss_dssp BCHHHHHHHTT----------CCCHHHHHHHHHHHHHHHTTCC--CCEECTTCCTTTTTCSSEEEEEEETT-SSCSCSSE T ss_pred HHHHHHHHHCC----------HHHHHHHHHHHHHHHHCCCCCC--CEEECCCCCCCCEECCCCEEEECCCC-CCCCCCCC T ss_conf 35678764011----------0367899998653100025877--51576302676100244024320344-53221004 Q ss_pred CCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 77543210320136534485220035789998742024555568702899846878999999999999876985999728 Q T0589 327 GGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFE 406 (465) Q Consensus 327 ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~ 406 (465) |||||++++.+.+..++++|++++..+...++......++ .+|.+|+|+|.++...++|.+|+++||++||+|++|++ T Consensus 290 gGrYd~l~~~~~~~~~~a~gf~~~~~~i~~lle~~~~~~~--~~~~~v~vi~~~~~~~~~a~~v~~~Lr~~girv~id~~ 367 (434) T 1wu7_A 290 GGRYDNLASLMSGESVPAVGFGMGDAVISLLLKRENVQIP--REKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM 367 (434) T ss_dssp EEECTTHHHHHHSCCCCEEEEEEEHHHHHHHHHHTTCCCC--CSSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCS T ss_pred CCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCC--CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 5544421000258644321010001577778987365532--22354126732788999999999999976998999728 Q ss_pred CCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 98977899999965897999986023438828999858886587148999999999639 Q T0589 407 KRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 407 ~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) ++++|+|+++|++.|+||+|+||++++++|+|+||+|.|++|..|+++|++++|+.+.| T Consensus 368 ~~~l~kkir~A~~~~ip~~lvvG~~E~~~~~v~vr~~~~~~q~~v~~~e~~~~l~~~~~ 426 (434) T 1wu7_A 368 ERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434) T ss_dssp CCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC T ss_pred CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHHC T ss_conf 99999999999987989899986647768978999999997599759999999997653 No 4 >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Probab=100.00 E-value=0 Score=398.10 Aligned_cols=418 Identities=21% Similarity=0.293 Sum_probs=316.9 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCC Q ss_conf 54015785211582679999999999999999739925006543326776311563102343433202011122135544 Q T0589 10 INFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSG 89 (465) Q Consensus 10 ~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (465) |+.++||||+||+|.|++++++|++.|+++|.++||++|+||+|++.++|++|+|. ++....++||+|. T Consensus 1 ~~~~~~kG~~D~~P~g~~~~~~i~~~~~~~~~~~G~~~I~tP~l~~~dl~~~s~~~-----------~~d~~~~~mf~~~ 69 (421) T 1h4v_B 1 MTARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGA-----------ATDIVRKEMFTFQ 69 (421) T ss_dssp -CCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC-----------------CCSCEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCC-----------CHHHHHHHCCCCC T ss_conf 98669998813594589999999999999999859979988622638886404775-----------0233566342406 Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 78885578547760999999999875157-74515775240026677777530000000013525752178999999999 Q T0589 90 DTGSEARALKFDQTVPLAAYIARHLNDLT-FPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAII 168 (465) Q Consensus 90 d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~-~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~ 168 (465) |++|+.++||||+|++++++++.....+. .+.++|+.+.+||++.++..+.+++.|...++++... ...+.+.+..+ T Consensus 70 D~~~~~l~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (421) T 1h4v_B 70 DRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSEN--PILDAEAVVLL 147 (421) T ss_dssp CTTSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCCC--HHHHHHHHHHH T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCCCEEEEECCHHHCCCCC--HHHHHHHHHHH T ss_conf 6999888117877789999986543320355300110341564034445652023431034326641--15778888888 Q ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 99999739982599972768899999872451037999999986330058578998887438898899999864125788 Q T0589 169 TEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGS 248 (465) Q Consensus 169 ~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (465) ...+..+.........++.............. ..................+...... .....+. T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~ 211 (421) T 1h4v_B 148 YECLKELGLRRLKVKLSSVGDPEDRARYNAYL-------REVLSPHREALSEDSKERLEENPMR---------ILDSKSE 211 (421) T ss_dssp HHHHHHTTCCSCEEEEEECCCHHHHHHHHHHH-------HHHHGGGGGGSCHHHHHHHHHCGGG---------GGGCCCH T ss_pred HHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCH---------HHHCCCH T ss_conf 88998736543221110046501223566667-------9999877764407899987645111---------2320145 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC Q ss_conf 8899999998874-311125678888889999999986089866323143340674001253788633365544440047 Q T0589 249 VDDVLDKLKHLSQ-TLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSG 327 (465) Q Consensus 249 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~g 327 (465) .......... .........................+ ..+.+|++++++++||||++|+.+....+.....++| T Consensus 212 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~d~~~~~~~~~ytg~~f~~~~~~~g~~~~~~~~ 285 (421) T 1h4v_B 212 ---RDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLS---VPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGG 285 (421) T ss_dssp ---HHHHHHHHHCCCCGGGGCCHHHHHHHHHHHHHHHHTT---CCEEECTTCCCCSTTCEEEEEEEEC------CEEEEE T ss_pred ---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC---EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEC T ss_conf ---6798876423725555421455556777653322150---3589836324555644562599971677764414335 Q ss_pred CCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 75432103201365344852200357899987420245555687028998468789999999999998769859997289 Q T0589 328 GRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEK 407 (465) Q Consensus 328 gryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~ 407 (465) |+|+.++..+.....++++...+..............++ +..+.+|++++..++..++|.+|+++|| +||+|++|+++ T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~~Lr-~~i~~~~~~~~ 363 (421) T 1h4v_B 286 GRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLP-EEKGPDLYLIPLTEEAVAEAFYLAEALR-PRLRAEYALAP 363 (421) T ss_dssp EECTTHHHHTTCCCCCEEEEEEEHHHHHHHHHHTTCCCC-CCCCCSEEEEESSHHHHHHHHHHHHHHT-TTSCEEECSSC T ss_pred CCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCEEEEECCCHHHHHHHHHHHHHHH-CCCCEEEECCC T ss_conf 665430000476555541420147899999986333554-4334323331368789999999999998-39929997799 Q ss_pred CCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 897789999996589799998602343882899985888658714899999999963 Q T0589 408 RQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 408 ~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +++||||++|+++|+||||+||++|+++|+||||+|+|++|.+|+++||+++|+++| T Consensus 364 ~~igkkir~a~~~~~p~~iivg~~e~e~~~v~ir~~~~~~q~~v~~~el~~~l~~~l 420 (421) T 1h4v_B 364 RKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421) T ss_dssp CCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHC T ss_pred CCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 999999999998798989998772776898999999999879964999999999963 No 5 >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Probab=100.00 E-value=0 Score=401.87 Aligned_cols=417 Identities=24% Similarity=0.358 Sum_probs=311.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC Q ss_conf 40157852115826799999999999999997399250065433267763115631023434332020111221355447 Q T0589 11 NFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD 90 (465) Q Consensus 11 ~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d 90 (465) ++|+||||+||+|.|++++++|++.|+++|.++||++|+||+|++.++|++||+. ++..+.++||.+.| T Consensus 3 ~~~~~kG~~d~lP~g~~i~~~l~~~i~~~~~~~Gy~~V~tP~i~~~dl~~~s~~~-----------~~d~~~~~m~~~~d 71 (423) T 1htt_A 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGE-----------VTDVVEKEMYTFED 71 (423) T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCS-----------SSHHHHHTCEEEEC T ss_pred CCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCC-----------HHHHHHHHCCCCCC T ss_conf 7779998601384089999999999999999869969989620708888543774-----------24445653674326 Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 88855785477609999999998751577451577524002667777753000000001352575217899999999999 Q T0589 91 TGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE 170 (465) Q Consensus 91 ~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e 170 (465) ++|+.++||||+|+++++++.++..++..|.++++.+.+||++..+..+.+++.|.+++.++... ...+.+.+..... T Consensus 72 ~~g~~l~Lrpd~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 149 (423) T 1htt_A 72 RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQG--PDIDAELIMLTAR 149 (423) T ss_dssp TTSCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCS--HHHHHHHHHHHHH T ss_pred CCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHH T ss_conf 89977504889868999999973000366601431053663112222344332202420146543--0255666655677 Q ss_pred HHHHCCCCCEEE-EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH Q ss_conf 999739982599-9727688999998724510379999999863300585789988874388988999998641257888 Q T0589 171 IFEAVNIGDFVI-RINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSV 249 (465) Q Consensus 171 ~~~~lgl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (465) .+..+++..... ..+............. ............ +...............+....+.. T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~ 214 (423) T 1htt_A 150 WWRALGISEHVTLELNSIGSLEARANYRD-------ALVAFLEQHKEK--------LDEDCKRRMYTNPLRVLDSKNPEV 214 (423) T ss_dssp HHHHHTCGGGCEEEEEECCCHHHHHHC----------------------------------------------------- T ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHH-------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 66543023203775022005888877789-------999876666765--------517777776550777753027216 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCC Q ss_conf 89999999887431112567888888999999998608986632314334067400125378863336554444004775 Q T0589 250 DDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGR 329 (465) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggr 329 (465) ....+.+...... .......... .....+......+.++++++++.+||+|.+|+.+....+...+++.||+ T Consensus 215 ~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~gg~ 286 (423) T 1htt_A 215 QALLNDAPALGDY-----LDEESREHFA---GLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGR 286 (423) T ss_dssp ------------------CCHHHHHHHH---HHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEE T ss_pred HHHHHHCHHHHHH-----HHHHHHHHHH---HHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 7776401011002-----2246677789---9999851048554542220246455557314663266565552024777 Q ss_pred CCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEECCC Q ss_conf 43210320136534485220035789998742024555568702899846878999999999999876--9859997289 Q T0589 330 YEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQA--GLNVITNFEK 407 (465) Q Consensus 330 yd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~--gi~v~~d~~~ 407 (465) |+.++..+++...++++............ .....++.+..|.++.+++..++..++|.+|+++||+. |++|++|+++ T Consensus 287 y~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~Lr~~~~~i~v~~d~~~ 365 (423) T 1htt_A 287 YDGLVEQLGGRATPAVGFAMGLERLVLLV-QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGG 365 (423) T ss_dssp CTTHHHHTTSCCCCEEEEEEEHHHHHHHH-HHHSTTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSC T ss_pred CCCHHHHCCCCCCCCEEEEEHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 63055650787666236640578999888-87345543454442222334257899999999999853998799995899 Q ss_pred CCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 897789999996589799998602343882899985888658714899999999963 Q T0589 408 RQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 408 ~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +++|+|+++|++.|+||+|+||++++++|||+||+|+||+|.+|+++||++.||++| T Consensus 366 ~~igkkir~A~~~~~p~~iiiG~~e~~~~~v~vr~~~t~~q~~v~~~el~~~lk~l~ 422 (423) T 1htt_A 366 GNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423) T ss_dssp CCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 999999999998697999998672676898999999999768962999999999963 No 6 >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Probab=100.00 E-value=0 Score=402.37 Aligned_cols=367 Identities=14% Similarity=0.133 Sum_probs=278.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCC Q ss_conf 78521158267999999999999999973992500654332677631156310234343320201112213554478885 Q T0589 15 PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSE 94 (465) Q Consensus 15 ~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 94 (465) ..|+++|+|.|+++|++|++.+|+++.++||+||.||+|++.++|++||| +..+.++|+.+.+ .++ T Consensus 260 ~~G~~~~lP~G~~i~~~Ie~~ir~~~~~~Gy~EV~tP~l~~~eLw~~sg~-------------~d~~~e~m~~~~~-~~~ 325 (642) T 1qf6_A 260 APGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGH-------------WDNYKDAMFTTSS-ENR 325 (642) T ss_dssp STTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSH-------------HHHHGGGCEEEEE-TTE T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCC-------------CCCCCCEEEEEEC-CCC T ss_conf 85156778509999999999999999972978996554576567865665-------------4333210365302-453 Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 5785477609999999998751577-4515775240026677----7775300000000135257521789999999999 Q T0589 95 ARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA----KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIIT 169 (465) Q Consensus 95 ~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~----~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~ 169 (465) .++|+|++|+.+++++.++..+|++ |+++||+|++||+|++ |+.|.|||+|.++++|+.+.+....+++++.++. T Consensus 326 ~~~LrPt~~~~~~~~~~~~~~SyrdLPlrlyq~g~~fR~E~~~~~~GL~R~ReF~~~da~~f~~~~q~~~e~~~~i~l~~ 405 (642) T 1qf6_A 326 EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVY 405 (642) T ss_dssp EEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHH T ss_pred CEEECCCCCCHHHHHHHHCCCCHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHH T ss_conf 20214788705899998531243208926888600586044576666654656522054367511555999999999999 Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH Q ss_conf 99997399825999727688999998724510379999999863300585789988874388988999998641257888 Q T0589 170 EIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSV 249 (465) Q Consensus 170 e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (465) ++|..||++.+.+.++.+.. ...+..+.|..+.......+... ++. + T Consensus 406 ~i~~~lGl~~~~v~lst~~e-----k~~g~~e~~~~a~~~~~~~~~~~------------~~~---------~------- 452 (642) T 1qf6_A 406 DMYSTFGFEKIVVKLSTRPE-----KRIGSDEMWDRAEADLAVALEEN------------NIP---------F------- 452 (642) T ss_dssp HHHGGGTCCCCEEEEECCCS-----SCCSCHHHHHHHHHHHHHHHHTT------------TCC---------C------- T ss_pred HHHHHCCCCEEEEEECCCCC-----CCCCCHHHHHHHHHHHHHHHHHC------------CCC---------C------- T ss_conf 99998399558999625877-----67886889999889999999866------------997---------1------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCC Q ss_conf 89999999887431112567888888999999998608986632314334067400125378863336554444004775 Q T0589 250 DDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGR 329 (465) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggr 329 (465) ... . . -..+. ...+.+......+..++.|+++-.+ ..+...+.+ T Consensus 453 ----------------~~~------~-----~-~~~~~--~pkid~~~~d~~gr~~~~~Tiqld~------~~~~~~~~~ 496 (642) T 1qf6_A 453 ----------------EYQ------L-----G-EGAFY--GPKIEFTLYDCLDRAWQCGTVQLDF------SLPSRLSAS 496 (642) T ss_dssp ----------------EEE------T-----T-CSCTT--CCEEEEEEECTTCCEEEEEEEEEES------SHHHHTTCC T ss_pred ----------------EEC------C-----C-CCCCC--CCCCEEEECCCCCCEEEEEEEEEEC------CCCCCCCCE T ss_conf ----------------233------5-----7-40115--7660045114666314741698864------556434123 Q ss_pred CCCCHHHHCCCCCCEEECCCHHHHHHHH-HHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 4321032013653448522003578999-874202455556870289984687899999999999987698599972898 Q T0589 330 YEELVGTFIGEKMPGVGISIGLTRLISR-LLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKR 408 (465) Q Consensus 330 yd~li~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~ 408 (465) |.+.........+.+.+...+.+|.+.+ .......||.|++|+||+|+|++++..++|.+|+++|+++||+|++|+++. T Consensus 497 y~~~~~~~~~~~~i~~~~~G~ieR~ia~liE~~g~~~P~~lAP~qV~IIpi~~~~~e~A~~i~~~L~~~Girv~vDdr~~ 576 (642) T 1qf6_A 497 YVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNE 576 (642) T ss_dssp EECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSS T ss_pred EECCCCCEECCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 77577760013687514540899999999986188578875873499997280289999999999998899899989999 Q ss_pred CHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 97789999996589799998602343882899985888658714899999999963 Q T0589 409 QLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 409 sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) ++|+|+++|+++|+||+|+||++++++|+|+||+|++++|..|+++++++.|++.+ T Consensus 577 ~~G~Kir~a~~~giP~~iiIG~kEle~~~V~vr~r~~~eq~~v~l~eli~~i~~~i 632 (642) T 1qf6_A 577 KIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEI 632 (642) T ss_dssp CHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 96299999986699899999842665798999998899334644999999999999 No 7 >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Probab=100.00 E-value=0 Score=401.10 Aligned_cols=369 Identities=13% Similarity=0.147 Sum_probs=270.3 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCC Q ss_conf 15785211582679999999999999999739925006543326776311563102343433202011122135544788 Q T0589 13 STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTG 92 (465) Q Consensus 13 ~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 92 (465) ++.+|||+|+|.|+++|++|++.|+++|+++||+||+||+|++.++|++|||. ....++||.+.|. T Consensus 17 ~~~~G~~~flP~g~~l~~~i~~~~r~~~~~~G~~eI~tP~le~~el~~~sg~~-------------d~~~~emy~~~~~- 82 (401) T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHW-------------DNYKDAMFTTSSE- 82 (401) T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHH-------------HHSGGGCCEEEET- T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCHHHHHHCCCC-------------CCCCCCEEEEECC- T ss_conf 88881778854599999999999999999869989989932728999764865-------------5445056999668- Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCCC----CCCCEEEEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 855785477609999999998751577-451577524002667777----753000000001352575217899999999 Q T0589 93 SEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERAKD----GRFRQFRQCDIDVVGREKLSLLYDAQMPAI 167 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~~~----~r~ref~q~~~~~f~~~~~~~~~~~e~i~~ 167 (465) |..++|||+.|++++++++.+..+++. |+|+||+|++||+|+++. +|.|||+|+++++|+.+.++...++|++.+ T Consensus 83 ~~~~~lrp~~~~~~~~~~~~~~~~~~~lP~k~y~ig~~fR~E~pq~~~GlgR~REF~Q~~~ei~g~~~~s~~~~~e~i~~ 162 (401) T 1evl_A 83 NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRL 162 (401) T ss_dssp TEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHH T ss_pred CCEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHH T ss_conf 97551587775299999999764211288059998510058888676775026899980079995757759999999999 Q ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC Q ss_conf 99999973998259997276889999987245103799999998633005857899888743889889999986412578 Q T0589 168 ITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDG 247 (465) Q Consensus 168 ~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (465) +.+++..+|+..+.+.+++.... ..+..+........+...+. ..+.. T Consensus 163 ~~~~~~~lg~~~~~~~l~~~~~~-----~~~~~e~~~~~~~~~~~~l~------------~~~~~--------------- 210 (401) T 1evl_A 163 VYDMYSTFGFEKIVVKLSTRPEK-----RIGSDEMWDRAEADLAVALE------------ENNIP--------------- 210 (401) T ss_dssp HHHHHHTTTCSCCEEEEECCCSS-----CCSCHHHHHHHHHHHHHHHH------------HTTCC--------------- T ss_pred HHHHHHHCCCCEEEEEECCCCCC-----CCCCHHHHHHHHHHHHHHHH------------HCCCC--------------- T ss_conf 99999975995189997154300-----14888999999986999998------------63996--------------- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC Q ss_conf 88899999998874311125678888889999999986089866323143340674001253788633365544440047 Q T0589 248 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSG 327 (465) Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~g 327 (465) ..... .........+........+..++++.++..............+. T Consensus 211 ---------------~~~~~----------------~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (401) T 1evl_A 211 ---------------FEYQL----------------GEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGE 259 (401) T ss_dssp ---------------CEEET----------------TCSBTTBCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECT T ss_pred ---------------HHHHC----------------CCCCCCCCCEEEECCCCCCCEEEECEEEECCHHHHCCCEEEECC T ss_conf ---------------55413----------------64111477446772001361455033564230210165299978 Q ss_pred CCCCCCHHHHCCCCCCEEECCCHHHHHHH-HHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 75432103201365344852200357899-98742024555568702899846878999999999999876985999728 Q T0589 328 GRYEELVGTFIGEKMPGVGISIGLTRLIS-RLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFE 406 (465) Q Consensus 328 gryd~li~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~ 406 (465) .-+...+ .....+...+..+... ........+|.+.+|++|+|++.+++...+|.+|+++||++||+|++|++ T Consensus 260 ~g~~~~~------~~~~~~~~g~~~~l~~~~~e~~~~~~p~~~ap~~v~I~~~~~~~~~~a~~la~~Lr~~Gi~v~~d~~ 333 (401) T 1evl_A 260 DNERKVP------VMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLR 333 (401) T ss_dssp TSCEECC------EEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECC T ss_pred CCCEEEE------EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 9988854------8996355348999999888761688982238737884379868999999999999978998999899 Q ss_pred CCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 9897789999996589799998602343882899985888658714899999999963 Q T0589 407 KRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 407 ~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) ++++|+|+++||++|+||+|+||++++++|+||||||+|++|.+|+++|++++|++.| T Consensus 334 ~~~l~kq~~~Ad~~g~p~~iiiG~~El~~g~Vtik~~~t~eq~~v~~~el~~~i~~~i 391 (401) T 1evl_A 334 NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEI 391 (401) T ss_dssp SSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 9998999999997699999999765786898999999999479966999999999999 No 8 >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Probab=100.00 E-value=0 Score=401.89 Aligned_cols=401 Identities=16% Similarity=0.225 Sum_probs=280.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHH Q ss_conf 63210246540157852115826799999999999999997399250065433267763115631023434332020111 Q T0589 2 NAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNR 81 (465) Q Consensus 2 ~~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~ 81 (465) .+|.|++.|. |..+|+|+|+|.|++++++|+++||++|.++||+||+||+|+|.+||++||| +... T Consensus 44 ~l~~r~G~i~-~~~~G~y~~lP~G~~v~~kIe~~ir~~~~~~G~~EI~tPil~~~eLw~~Sg~-------------~d~~ 109 (458) T 2i4l_A 44 RLMLRAGMLR-QEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGR-------------YDAY 109 (458) T ss_dssp HHHHHTTCEE-EEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTH-------------HHHS T ss_pred HHHHHCCCCC-CCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCC-------------CCCC T ss_conf 9998737776-0688650777318999999999999999986998998886387689877187-------------0014 Q ss_pred HHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC---CCCCCCEEEEEEEEEEECCCHH Q ss_conf 22135544788855785477609999999998751577-4515775240026677---7775300000000135257521 Q T0589 82 QAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA---KDGRFRQFRQCDIDVVGREKLS 157 (465) Q Consensus 82 ~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~---~~~r~ref~q~~~~~f~~~~~~ 157 (465) .++||.+.|++++.++|+|++|+.+++++.....++++ |.++||++++||+|.+ +..|.|||.|.++++|+.+... T Consensus 110 ~~em~~~~dr~~r~~~L~P~~~~~~~~~~~~~~~sy~~lP~~lyqi~~~fR~E~~~~~gl~r~ref~~~d~~~f~~~~~~ 189 (458) T 2i4l_A 110 GPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAG 189 (458) T ss_dssp CTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHH T ss_pred CCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCHHH T ss_conf 61000011324300003777863888999874326100576367310487444577547735899998525442211456 Q ss_pred HHHHHHHHHHHH-HHHHHCCCCCEEEEECCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHH Q ss_conf 789999999999-9999739982599972768899999872-45103799999998633005857899888743889889 Q T0589 158 LLYDAQMPAIIT-EIFEAVNIGDFVIRINNRKVLTGFFQSL-NISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQ 235 (465) Q Consensus 158 ~~~~~e~i~~~~-e~~~~lgl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (465) +...+..+..++ .++..+++....+......+........ ...+... .... .+.... ....+... T Consensus 190 ~~~~~~~~~~~y~~i~~~~~l~~~~v~~~~~~ig~~~~~Ef~~~~~~~~----------~~~~--~~~~~~-~~~~~~e~ 256 (458) T 2i4l_A 190 ARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGE----------SGVY--IDRDVL-NLPVPDEN 256 (458) T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCS----------EEEE--EEGGGG-GCCCCCTT T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH----------HHHH--HHHHHH-CCCCCCCC T ss_conf 8999999999999999974972599885367777642299998765445----------5666--654543-36789744 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEE Q ss_conf 99998641257888899999998874311125678888889999999986089866323143340674001253788633 Q T0589 236 TQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTL 315 (465) Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~ 315 (465) .................. ......... ..+.... .. .+....+++++ |++|+... T Consensus 257 -------~~~~~~~~~~~~~~~~~~---~~~~d~~~~-------~~~~~~~--~~----~~~~~~rgie~--g~~f~lg~ 311 (458) T 2i4l_A 257 -------VDYDGDLTPIIKQWTSVY---AATEDVHEP-------ARYESEV--PE----ANRLNTRGIEV--GQIFYFGT 311 (458) T ss_dssp -------CCTTSCCHHHHHHHHHSC---EEETTTCCT-------THHHHHS--CT----TTEEEEEEEEE--EEEEEEET T ss_pred -------CCCCCCCCHHHHHHHHHC---CCHHHHCCH-------HHHEECC--CH----HHHCCCEEEEE--CCEEECCC T ss_conf -------433444441144455530---322432231-------2210136--63----44056516897--37033263 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHH-----HCCCCCCCCCCEEEEEECC---HHHHHHH Q ss_conf 3655444400477543210320136534485220035789998742-----0245555687028998468---7899999 Q T0589 316 IGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKA-----GILNTLPPTPAQVVVVNMQ---DELMPTY 387 (465) Q Consensus 316 ~~~~~~~~i~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~V~v~~~~---~~~~~~a 387 (465) ..+ ...+.+|+..... ...++++++++|.+|...+..+. ++.||.+++|++|.|+|++ ++..++| T Consensus 312 ~~s-----~~~~~~~~~~~g~--~~~~~~g~~giGieRl~~~l~e~~~d~~gl~~P~~lAP~qv~Iipl~~~d~~~~~~A 384 (458) T 2i4l_A 312 KYS-----DSMKANVTGPDGT--DAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAAC 384 (458) T ss_dssp HHH-----HHTTCEEECTTSC--EEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHH T ss_pred CCH-----HHCCCEEECCCCC--EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH T ss_conf 002-----2149656557897--776999953773229999887632786661203455776699996578809999999 Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHH Q ss_conf 99999998769859997289897789999996589799998602343882899985888658714899999999 Q T0589 388 LKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIK 461 (465) Q Consensus 388 ~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~ 461 (465) .+|+++|+++||+|.+||++.++|+||++||++|+||+||||++++++|+||||+|+||+|.+|+++||++.|. T Consensus 385 ~~l~~~L~~~gi~v~~Ddr~~~~G~k~~~ad~iG~P~~iiVG~~ele~g~V~vr~R~t~eq~~v~i~elv~~ls 458 (458) T 2i4l_A 385 DQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARLT 458 (458) T ss_dssp HHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-- T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEEEEEHHHHHHHHC T ss_conf 99999999789999998999998899999997699989999188366899999998899568866999998509 No 9 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Probab=100.00 E-value=0 Score=387.75 Aligned_cols=374 Identities=15% Similarity=0.156 Sum_probs=261.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCC-CCC Q ss_conf 1578521158267999999999999999973992500654332677631156310234343320201112213554-478 Q T0589 13 STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKS-GDT 91 (465) Q Consensus 13 ~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ 91 (465) +...|++.|+|.|+++|++|++.+|+++.++||+||.||+|++.++|+.||| |..+.++||.+ .|. T Consensus 258 ~~~~G~~~wlP~G~~i~~~Ie~~ir~~~~~~Gy~EV~tP~l~~~~Lw~~SGh-------------~~~y~~~m~~~~~~~ 324 (645) T 1nyr_A 258 LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGH-------------WDHYQEDMFPPMQLD 324 (645) T ss_dssp TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTH-------------HHHCTTSSCCCEEET T ss_pred CCCCCCEEEHHCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHCCCCC-------------CCCCCCCCCEEEECC T ss_conf 3589726602268999999999999999973768720764246645113565-------------211245530456426 Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCC----CCCCCCCEEEEEEEEEEECCCHHHHHHHHHHH Q ss_conf 8855785477609999999998751577-451577524002667----77775300000000135257521789999999 Q T0589 92 GSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGER----AKDGRFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465) Q Consensus 92 ~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~----~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~ 166 (465) +++.++|||++|+.+++++..+..+|++ |+++||+|++||+|. +|+.|.|||+|.++|+|+.+++.....++++. T Consensus 325 ~~e~~~LrP~~~~~~~~~~~~~~~SyrdLPlrlyq~g~~fR~E~~~~~~gl~R~ReF~q~d~h~F~~~~q~~~e~~~vi~ 404 (645) T 1nyr_A 325 ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVN 404 (645) T ss_dssp TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHH T ss_pred CCCCEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCCCCCCCEEEEEEECCEEEECCHHHHHHHHHHHHH T ss_conf 66524146645550225565422044557556602443782178888677630466897241485373789999999999 Q ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 99999997399825999727688999998724510379999999863300585789988874388988999998641257 Q T0589 167 IITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKID 246 (465) Q Consensus 167 ~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (465) ++.++|..||+....+.++...... ++ ...+ ...... T Consensus 405 ~~~~vy~~~Gl~~~~~~~~~~~~~~--------~~-------------k~~~-------------~~~~~~--------- 441 (645) T 1nyr_A 405 MIIDVYKDFGFEDYSFRLSYRDPED--------KE-------------KYFD-------------DDDMWN--------- 441 (645) T ss_dssp HHHHHHHHTTCCCEEEEEEECCCCC--------SS-------------SSSC-------------CHHHHH--------- T ss_pred HHHHHHHHHCCCCEEEEEECCCCCC--------CH-------------HHCC-------------CHHHHH--------- T ss_conf 9999999978983389975168887--------21-------------2046-------------167778--------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCC Q ss_conf 88889999999887431112567888888999999998608986632314334067400125378863336554444004 Q T0589 247 GSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICS 326 (465) Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ 326 (465) .....+.............. . .-.....++..+...... +.. ..+..++...... ..- T Consensus 442 ----~~~~~~~~~~~~~~~~~~~~----~------~e~~~~~~k~d~~~~~~~--~~~-~~~~t~qld~~~~-----~~f 499 (645) T 1nyr_A 442 ----KAENMLKEAADELGLSYEEA----I------GEAAFYGPKLDVQVKTAM--GKE-ETLSTAQLDFLLP-----ERF 499 (645) T ss_dssp ----HHHHHHHHHHHHHCCCCCCE----E------SCSBTTBCEEEEEECCTT--SCC-EEEEEEEEESSHH-----HHT T ss_pred ----HHHHHHHHHHHHCCCCCEEE----C------CCCCCCCCCCCEEEHHCC--CCC-CCCEEEECCCCCC-----CCC T ss_conf ----99998887898639851330----1------610014764200121005--872-2221322034577-----300 Q ss_pred CCCCCCCHHHHCCCCCCEEECCCHHHHHHH-HHHHHHCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 775432103201365344852200357899-987420245555687028998468-789999999999998769859997 Q T0589 327 GGRYEELVGTFIGEKMPGVGISIGLTRLIS-RLLKAGILNTLPPTPAQVVVVNMQ-DELMPTYLKVSQQLRQAGLNVITN 404 (465) Q Consensus 327 ggryd~li~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~p~~V~v~~~~-~~~~~~a~~i~~~Lr~~gi~v~~d 404 (465) +-.|..-........+...++..+.++.+. +.......||.|+||+||+|+|++ +...++|.+|++.|+++||+|++| T Consensus 500 ~l~Y~~~~~~~~~p~~i~~gi~G~ieR~i~~liE~~~g~lP~~LAP~QV~Iipi~~~~~~e~A~~l~~~L~~~Girv~vD 579 (645) T 1nyr_A 500 DLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSID 579 (645) T ss_dssp TCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEEC T ss_pred EEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 25897043013435532652110799999997451288899760884389995585478999999999999789889998 Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 289897789999996589799998602343882899985888658714899999999963 Q T0589 405 FEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 405 ~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +++.++|+|+++|+++|+||+|+||++++++|+||||+|++++|.+|+++++++.|++.+ T Consensus 580 dr~~slG~Kir~a~~~giP~~iiVG~kEle~~~Vtvr~R~~~~q~~v~ldeli~~l~~ei 639 (645) T 1nyr_A 580 DRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEI 639 (645) T ss_dssp CSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 999997599999986699999999933775898999998899457750999999999999 No 10 >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Probab=100.00 E-value=0 Score=375.64 Aligned_cols=445 Identities=18% Similarity=0.162 Sum_probs=267.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHH Q ss_conf 63210246540157852115826799999999999999997399250065433267763115631023434332020111 Q T0589 2 NAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNR 81 (465) Q Consensus 2 ~~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~ 81 (465) .+|.|.+.+. |..+|+|||||.|++++++|+++||+.|.+.|++||++|+|+|.+||++||| +... T Consensus 24 ~l~~r~g~i~-~~saGlyd~gP~G~~lk~~I~~~wr~~~~~~g~~EV~~P~i~p~~v~kaSGH-------------vd~F 89 (572) T 2j3l_A 24 QILLRAGYIR-QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGR-------------YETY 89 (572) T ss_dssp HHHHHTTSEE-EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSH-------------HHHS T ss_pred HHHHHCCCCC-CCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCC-------------CCCC T ss_conf 9998758873-1588151714529999999999999999986998998974188899986088-------------4535 Q ss_pred HHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCC---CCCCCCCEEEEEEEEEEECCCHH Q ss_conf 22135544788855785477609999999998751577-451577524002667---77775300000000135257521 Q T0589 82 QAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGER---AKDGRFRQFRQCDIDVVGREKLS 157 (465) Q Consensus 82 ~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~---~~~~r~ref~q~~~~~f~~~~~~ 157 (465) .++||++.|+.+..++|+|++++.+...+.....++.. |.++|+++.+||++. .|..|.|||+|.+.+.|+.+... T Consensus 90 ~D~M~~~~d~~~~~~~l~p~~e~~~~~~~~~~~~s~~~lp~~~~q~~~~~r~e~~~~~G~~r~~ef~~~d~~~~~~~~~~ 169 (572) T 2j3l_A 90 GPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEAS 169 (572) T ss_dssp CTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHH T ss_pred CCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC T ss_conf 63707878458873666788757899998764111555078999740003564456777543200010223410012442 Q ss_pred HHHHHHHHH-HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------------- Q ss_conf 789999999-99999997399825999727688999998724-51037999999986----------------------- Q T0589 158 LLYDAQMPA-IITEIFEAVNIGDFVIRINNRKVLTGFFQSLN-ISETQIKSCISIID----------------------- 212 (465) Q Consensus 158 ~~~~~e~i~-~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------- 212 (465) ....++.+. ...++|+.++++..........+......... .....+.....+.+ T Consensus 170 ~~e~~~~~~~~~~~if~~~~~~~~~~~~~~~~ig~~~~~e~~~~~~~~e~~~~~~~~~~~~~n~e~~~~~~~~~~~~~~~ 249 (572) T 2j3l_A 170 LDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQ 249 (572) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHCCCCCHHHHCHHHCCCCCCCCCCCCCC T ss_conf 68888899999999998606540010113544456755011201432211220111102342344402347855565443 Q ss_pred -HHHCC---CHHHHHHHHHHCCCCHHHHHHH--------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -33005---8578998887438898899999--------86412578888999999988743111256788888899999 Q T0589 213 -NLEKI---GEAKVKLELEKEGINPEQTQKI--------IDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVI 280 (465) Q Consensus 213 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (465) ..+.. ...............+...... .......++......++............ ....+.... T Consensus 250 ~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 326 (572) T 2j3l_A 250 LDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEA---TEEDARRVL 326 (572) T ss_dssp CCCEEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEEC---CHHHHHHHH T ss_pred CCHHHCCCCCCCCHHHHHHHCCCCHHHHEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHH---HHHHHHHHC T ss_conf 23231148986407888876079887730046894156258999835610318999976255465542---178899751 Q ss_pred HHHHHCCC-----CCCCEEECHHHCCCCCCCC----------CEEE----EE------EECCCCCCCCCCCCCCCC---- Q ss_conf 99986089-----8663231433406740012----------5378----86------333655444400477543---- Q T0589 281 TGVRNLGV-----PDKRFCIDLAIARGLNYYT----------GTVY----ET------TLIGHEALGSICSGGRYE---- 331 (465) Q Consensus 281 ~~~~~~g~-----~~~~~~~d~~~~~~~~yyt----------g~vf----e~------~~~~~~~~~~i~~ggryd---- 331 (465) +....... .+..++.+.+......+.. +..+ .. .....+...+.+ ++... T Consensus 327 g~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 405 (572) T 2j3l_A 327 GAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDG-NGVLAFTKG 405 (572) T ss_dssp SSCTTSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTS-SSBEEEEEE T ss_pred CCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCHHEECCCCCCCCCCCCEEEEEEECCCCCCCCC-CCEEEEECC T ss_conf 9864445554677683588446453301321244410010006775544686522210110246778767-752455200 Q ss_pred -----------CCHHHH--------C-CCCCCEEECCCHHHHHHHHHHHH-----HCCCCCCCCCCEEEEEECC---HHH Q ss_conf -----------210320--------1-36534485220035789998742-----0245555687028998468---789 Q T0589 332 -----------ELVGTF--------I-GEKMPGVGISIGLTRLISRLLKA-----GILNTLPPTPAQVVVVNMQ---DEL 383 (465) Q Consensus 332 -----------~li~~~--------~-~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~V~v~~~~---~~~ 383 (465) ...+.+ + .........++|.+|++.+..+. ++.||+++||++|.|+|+. +.+ T Consensus 406 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Rii~~l~E~~~de~gl~lP~~iAP~~v~V~Pl~~k~~~~ 485 (572) T 2j3l_A 406 IEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQ 485 (572) T ss_dssp EEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHH T ss_pred CCCCCEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHH T ss_conf 01332110254334340689986778561158752642088999999998357781467876589479999647886899 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 99999999999876985999728989778999999658979999860234388289998588865871489999999996 Q T0589 384 MPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRR 463 (465) Q Consensus 384 ~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~ 463 (465) .+.|.+|++.|+++||+|.+||++.|||+||+++|++|+||+||||+++++ |+||||+|||++|.+|+++||+++|+++ T Consensus 486 ~~~a~~i~~~L~~~gi~v~~Dd~~~~iG~ry~r~D~~g~P~~itVg~~~~~-~~vt~r~Rd~~~q~r~~~~~~~~~~~~l 564 (572) T 2j3l_A 486 TKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVD-GVVEVKIKRTGEMLEVRKEELESTLSIL 564 (572) T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGGGG-TEEEEEETTTCCEEEEEHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCC-CEEEEEECCCCCEEEECHHHHHHHHHHH T ss_conf 999999999999789989998999998799999786499889998787446-9399999158966887399999999999 Q ss_pred CC Q ss_conf 39 Q T0589 464 LT 465 (465) Q Consensus 464 l~ 465 (465) |. T Consensus 565 ~~ 566 (572) T 2j3l_A 565 MN 566 (572) T ss_dssp CC T ss_pred HH T ss_conf 99 No 11 >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, Pro(Cys)RS, translation, ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Probab=100.00 E-value=0 Score=360.44 Aligned_cols=343 Identities=14% Similarity=0.167 Sum_probs=237.4 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH Q ss_conf 9632102465401-578521158267999999999999999973992500654332677631156310234343320201 Q T0589 1 SNAMAKNDKINFS-TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 1 ~~~~~~~~~~~~~-~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~ 79 (465) +++|.|+++++++ +++||+||+|.|+.+|++|++.++++|+++||+||.||+|+|.++|++++++ .. T Consensus 29 ~~vi~~a~l~d~~~pvkG~~~~lP~g~~i~~~I~~~~~~~~~~~G~~ei~tP~l~~~el~~k~~gh------------~e 96 (518) T 3ial_A 29 DAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDH------------IK 96 (518) T ss_dssp HHHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHH------------HH T ss_pred HHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCC------------CC T ss_conf 999996687333899890358893099999999999999999849989988856059998564287------------56 Q ss_pred HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCC-CCCCC--CCCEEEEEEEEEE Q ss_conf 1122135544----788855785477609999999998751577-45157752400266-77777--5300000000135 Q T0589 80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVV 151 (465) Q Consensus 80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~-~~~~~--r~ref~q~~~~~f 151 (465) ...++||.+. |+.++.++|||++|++++++++.+..++++ |+|+||+|++||+| ++..+ |.|||+|+++|+| T Consensus 97 ~f~~Emy~vt~~g~d~~~~~l~LRPt~e~~i~r~~~~~~~s~rdLPlk~yq~g~vfR~E~r~~~G~lR~REF~Q~e~~~~ 176 (518) T 3ial_A 97 GFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCC 176 (518) T ss_dssp HHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEE T ss_pred CCCHHHEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEE T ss_conf 44540168845787767876887248819999999864324333681688983056244578877737768998468999 Q ss_pred ECCCHHHHHHHHHHHHHH---HHH-HHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 257521789999999999---999-9739982599972768899999872451037999999986330058578998887 Q T0589 152 GREKLSLLYDAQMPAIIT---EIF-EAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELE 227 (465) Q Consensus 152 ~~~~~~~~~~~e~i~~~~---e~~-~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (465) +.+.+.+ +++++.... +.+ ..|+++.......... + T Consensus 177 g~~~~ea--~~e~~~~l~~y~~~~~~~L~i~~~~~~k~~~E---------------------------k----------- 216 (518) T 3ial_A 177 HATAEDA--VSQLSDYWKVIDTIFSDELCFKGQKLRRVCWD---------------------------R----------- 216 (518) T ss_dssp ESSHHHH--HHHHHHHHHHHHHHHTTTTCCCCEEEEECGGG---------------------------C----------- T ss_pred ECCHHHH--HHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHH---------------------------H----------- T ss_conf 6898999--99999999999999988736513533142644---------------------------4----------- Q ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCC Q ss_conf 43889889999986412578888999999988743111256788888899999999860898663231433406740012 Q T0589 228 KEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 307 (465) Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yyt 307 (465) . .+ ......++..+..+..... T Consensus 217 -----------------------------------f----------------------~~-a~~~~~~e~~~~~g~~~q~ 238 (518) T 3ial_A 217 -----------------------------------F----------------------PG-ADYSEVSDVVMPCGRVLQT 238 (518) T ss_dssp -----------------------------------C----------------------TT-CSEEEEEEEECTTSCEEEE T ss_pred -----------------------------------C----------------------CC-CCCCCCCHHHHHCCCCEEE T ss_conf -----------------------------------1----------------------56-4332410132114764177 Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCH--HHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC----- Q ss_conf 537886333655444400477543210--3201365344852200357899987420245555687028998468----- Q T0589 308 GTVYETTLIGHEALGSICSGGRYEELV--GTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQ----- 380 (465) Q Consensus 308 g~vfe~~~~~~~~~~~i~~ggryd~li--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~----- 380 (465) |++++.......... -.|..-. ..+......+++...............++.+|.+++|+||+|+|++ T Consensus 239 ~t~~~Lg~~~s~~~~-----i~~~~~~~~~~~~~~~s~gi~~R~i~~li~~~~d~~Gl~lP~~iAp~qVvIipi~~~~~~ 313 (518) T 3ial_A 239 AGIHNLGQRFSSTFD-----ILYANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKN 313 (518) T ss_dssp EEEEEEETHHHHHTT-----CCEECTTCCEECCEEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTT T ss_pred EEEHHCCCCHHHHCC-----CEEECCCCEEECCEECCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCC T ss_conf 323230563356338-----577446776734401475775899999999628587774685628745999966765422 Q ss_pred -----HHHHHHHHHHHHHHHH-CCCEEEEECC-CCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCC--CEEEE Q ss_conf -----7899999999999987-6985999728-9897789999996589799998602343882899985888--65871 Q T0589 381 -----DELMPTYLKVSQQLRQ-AGLNVITNFE-KRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSG--EQVEV 451 (465) Q Consensus 381 -----~~~~~~a~~i~~~Lr~-~gi~v~~d~~-~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~--~q~~v 451 (465) ++...+|.+|+++||+ +||+|++|++ +.|+|+|+++|+++|+||+|+||++++++|+||||+|||| +|..| T Consensus 314 ~~~~~e~~~~~A~~i~~~LR~~~Girv~~D~r~~~s~g~k~~~Ae~~Gvp~~IiIG~~Ele~g~Vtik~Rdtg~~ek~~v 393 (518) T 3ial_A 314 NQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVI 393 (518) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEE T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCCCEEEC T ss_conf 02200999999999999999757988999889999999999999977998899988315657969999898887671623 Q ss_pred CHHHHHH Q ss_conf 4899999 Q T0589 452 ALADLAE 458 (465) Q Consensus 452 ~~~el~~ 458 (465) +++|+++ T Consensus 394 ~~~e~~~ 400 (518) T 3ial_A 394 PITEVMK 400 (518) T ss_dssp EHHHHHC T ss_pred CHHHHHH T ss_conf 6999988 No 12 >1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Probab=100.00 E-value=0 Score=360.75 Aligned_cols=343 Identities=17% Similarity=0.202 Sum_probs=247.7 Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH-HHHHCCCCCHHHHHHHHHCCHH Q ss_conf 632102465401-57852115826799999999999999997399250065433267-7631156310234343320201 Q T0589 2 NAMAKNDKINFS-TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLE-VLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 2 ~~~~~~~~~~~~-~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~-~~~~sg~~~~~~~~~~~~~~~~ 79 (465) ++|.|++++++. +++|+++|+|.|+++|++|+++|++++.+ ||++|.||+|.|.+ +|++||| +. T Consensus 46 ~~~~~a~l~d~~~~v~G~~~~lP~G~~i~~~Ie~~~r~~~~~-G~~eV~tP~li~~~~L~k~SGh-------------~~ 111 (501) T 1nj1_A 46 NILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIH-------------VK 111 (501) T ss_dssp HHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHH-------------HH T ss_pred HHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC-CCEEEECCCEECHHHHHHHHCC-------------CC T ss_conf 999972882238999706997712999999999999999985-9979979874057898676466-------------55 Q ss_pred HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCC---CCCCCEEEEE-EEEE Q ss_conf 1122135544----788855785477609999999998751577-45157752400266777---7753000000-0013 Q T0589 80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERAK---DGRFRQFRQC-DIDV 150 (465) Q Consensus 80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~~---~~r~ref~q~-~~~~ 150 (465) .+.++||.+. |..++.++|||++|+.+..+++....++++ |+++||+|++||+|.++ +.|.|||+|+ +.++ T Consensus 112 ~f~eemf~v~~~g~~~~~~~~~LrPt~e~~~~~~~~~~~~SyrdLPlrl~q~g~~fR~E~~~~~gllR~REF~q~ed~~~ 191 (501) T 1nj1_A 112 GFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHT 191 (501) T ss_dssp HTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEE T ss_pred CCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCCCEEEEEEEEECCCCCE T ss_conf 44647718841675556762787137888999999854431677997999874105213323675279999985243324 Q ss_pred EECCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC Q ss_conf 5257521789999-999999999973998259997276889999987245103799999998633005857899888743 Q T0589 151 VGREKLSLLYDAQ-MPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKE 229 (465) Q Consensus 151 f~~~~~~~~~~~e-~i~~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465) +..+.+.+..++. ++....+++..++++.........+. . T Consensus 192 ~~~~~e~~~~e~~~~l~~y~~~~~~l~i~~~~~~~~~~d~---------------------------~------------ 232 (501) T 1nj1_A 192 IHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDK---------------------------F------------ 232 (501) T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTS---------------------------C------------ T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC---------------------------C------------ T ss_conf 1489899999999999999999864164412112466654---------------------------4------------ Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCE Q ss_conf 88988999998641257888899999998874311125678888889999999986089866323143340674001253 Q T0589 230 GINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGT 309 (465) Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~ 309 (465) .+. ...+..+.....|-..-.|+ T Consensus 233 ----------------~ga-----------------------------------------~~~~~~e~~~~~Gr~le~gt 255 (501) T 1nj1_A 233 ----------------PGS-----------------------------------------EYTVAFDTLMPDGKTLQIGT 255 (501) T ss_dssp ----------------TTC-----------------------------------------SEEEEEEEECTTSCEEEEEE T ss_pred ----------------CCC-----------------------------------------HHEECCHHEECCCCEEEEEE T ss_conf ----------------462-----------------------------------------21111000002575125750 Q ss_pred EEEEEECCCCCCC--CCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHH-----HHHHHCCCCCCCCCCEEEEEEC--- Q ss_conf 7886333655444--40047754321032013653448522003578999-----8742024555568702899846--- Q T0589 310 VYETTLIGHEALG--SICSGGRYEELVGTFIGEKMPGVGISIGLTRLISR-----LLKAGILNTLPPTPAQVVVVNM--- 379 (465) Q Consensus 310 vfe~~~~~~~~~~--~i~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~V~v~~~--- 379 (465) ++........... -....|... .+.....+++. +.... .....+.+|+++||+||.|+|+ T Consensus 256 ~~~Lg~~~s~~f~i~y~~~~g~~~---------~v~~~~~G~~~-R~i~~lie~~~d~~gl~lP~~lAP~qv~Iipi~~~ 325 (501) T 1nj1_A 256 VHNLGQTFARTFEIKFETPEGDHE---------YVHQTCYGLSD-RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFK 325 (501) T ss_dssp EEEEETHHHHHHTCEEECTTSCEE---------ECEEEEEEECT-HHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSS T ss_pred EECCCCHHHHHHCCCCCCCCCCCE---------EEEECCCHHHH-HHHHHHHHHHHHCCCCCCCHHHCCCEEEEEECCCC T ss_conf 110444366750355134556422---------45323431654-35465566633225770574217624899973577 Q ss_pred --CHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHH Q ss_conf --878999999999999876985999728989778999999658979999860234388289998588865871489999 Q T0589 380 --QDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLA 457 (465) Q Consensus 380 --~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~ 457 (465) +++..++|.+|+++|+++||||.+|+++.|+|+||++|+++|+||+|+||++++++|+|+||+|++++|.+|++++|+ T Consensus 326 ~~~~~~~~~a~~i~~~L~~~girv~~Ddr~~~~G~K~~~a~~~gvP~~i~IG~~ele~~~V~vr~Rd~~ek~~v~~~~l~ 405 (501) T 1nj1_A 326 KAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIE 405 (501) T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHCCEEEEEECCCCCEEEEEHHHHH T ss_conf 64089999999999999756996245888861537999999728988999766333179799998558955775399999 Q ss_pred HHHHHHC Q ss_conf 9999963 Q T0589 458 EEIKRRL 464 (465) Q Consensus 458 ~~l~~~l 464 (465) ++|+++| T Consensus 406 ~~i~~ll 412 (501) T 1nj1_A 406 ETLRELM 412 (501) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 13 >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Probab=100.00 E-value=0 Score=354.66 Aligned_cols=350 Identities=16% Similarity=0.187 Sum_probs=244.3 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH Q ss_conf 9632102465401-578521158267999999999999999973992500654332677631156310234343320201 Q T0589 1 SNAMAKNDKINFS-TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 1 ~~~~~~~~~~~~~-~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~ 79 (465) +|+|.|++++++. +++||++|+|.|+++|++|++.++++|.++||+||.||+|+|.++|+++|+ |+. T Consensus 12 ~~v~~~a~l~~~~~~vkG~~~~lP~G~~i~~~ie~~~r~~~~~~Gy~eI~tP~l~~~~l~~k~~~------------h~d 79 (459) T 1nj8_A 12 SDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAE------------HIK 79 (459) T ss_dssp HHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCS------------SSG T ss_pred HHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCC------------CCC T ss_conf 99999759811689999628987239999999999999999985998998874278899987328------------745 Q ss_pred HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCC---CCCCCEEE-EEEEEE Q ss_conf 1122135544----788855785477609999999998751577-45157752400266777---77530000-000013 Q T0589 80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERAK---DGRFRQFR-QCDIDV 150 (465) Q Consensus 80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~~---~~r~ref~-q~~~~~ 150 (465) ...++||.+. |..++.++|||++|+.+++++..+..++++ |+++||+|++||+|.++ ..|.|||. |.+.++ T Consensus 80 ~f~~Emy~v~~~~~~~~~~~~~LrPt~e~~~~~~~~~~~~s~rdLPlr~~q~g~~fR~E~~~~~~~lR~reF~q~~~~h~ 159 (459) T 1nj8_A 80 GFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHT 159 (459) T ss_dssp GGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEE T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEE T ss_conf 23746379843786545641035788762899999752235344880576455328705514567648899722242477 Q ss_pred EECCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC Q ss_conf 5257521789999-999999999973998259997276889999987245103799999998633005857899888743 Q T0589 151 VGREKLSLLYDAQ-MPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKE 229 (465) Q Consensus 151 f~~~~~~~~~~~e-~i~~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465) ++.+.+....... .+....+++..++++............ .+ T Consensus 160 ~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~----------- 202 (459) T 1nj8_A 160 AHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKF--------------------------PG----------- 202 (459) T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCC--------------------------TT----------- T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC--------------------------CC----------- T ss_conf 42988999999999999999997431214222104522334--------------------------54----------- Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCE Q ss_conf 88988999998641257888899999998874311125678888889999999986089866323143340674001253 Q T0589 230 GINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGT 309 (465) Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~ 309 (465) . ...+........+...-.++ T Consensus 203 -~----------------------------------------------------------~~~~~~~~~~~~~~~~~~~t 223 (459) T 1nj8_A 203 -A----------------------------------------------------------EYTMAFDTIFPDGRTMQIAT 223 (459) T ss_dssp -C----------------------------------------------------------SEEEEEEEECTTSCEEEEEE T ss_pred -C----------------------------------------------------------HHHHCCHHHHHCCCCCEEEE T ss_conf -2----------------------------------------------------------12211102331357626733 Q ss_pred EEEEEECCCCCCCCC--CCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC-----HH Q ss_conf 788633365544440--04775432103201365344852200357899987420245555687028998468-----78 Q T0589 310 VYETTLIGHEALGSI--CSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQ-----DE 382 (465) Q Consensus 310 vfe~~~~~~~~~~~i--~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~-----~~ 382 (465) .+............. ...+..+.+. ....++...+............++.+|++++|.+|.|+|+. .. T Consensus 224 ~~~Lg~~~~~~~~i~~~d~~~~~~~~~-----~ts~gi~~rli~~~i~~~~d~~Gl~~p~~iap~qv~IiPi~~~~~~~~ 298 (459) T 1nj8_A 224 VHNLGQNFSKTFEIIFETPTGDKDYAY-----QTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDI 298 (459) T ss_dssp EEEEETHHHHHTTCEEECTTSSEEECE-----EEEEEECTHHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHH T ss_pred EEECCCCCCCCCCEEEECCCCCCEEEE-----EECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCCHH T ss_conf 642467555445136514667620046-----731541002678899886664074202345776406997325774078 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHH Q ss_conf 99999999999987698599972898977899999965897999986023438828999858886587148999999999 Q T0589 383 LMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKR 462 (465) Q Consensus 383 ~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~ 462 (465) ..++|.+|++.|+ .||+|.+|+++.|+|+|+++|+++|+||+|+||++++++|+|+||+|+|++|.+|++++|++.|++ T Consensus 299 ~~e~a~~i~~~L~-~girv~~D~~~~s~g~K~~~a~~~gvP~~iiIG~~e~e~~~v~v~~r~t~~k~~v~~~~l~~~i~~ 377 (459) T 1nj8_A 299 VMEKAKEIYEKLK-GKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEK 377 (459) T ss_dssp HHHHHHHHHHHHH-TTSCEEECCSCSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHH T ss_pred HHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECHHHHHHHHHH T ss_conf 9999999999974-768624545886076899999860989999987762138979999957995588729999999999 Q ss_pred HC Q ss_conf 63 Q T0589 463 RL 464 (465) Q Consensus 463 ~l 464 (465) +| T Consensus 378 ~l 379 (459) T 1nj8_A 378 TL 379 (459) T ss_dssp HH T ss_pred HH T ss_conf 99 No 14 >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Probab=100.00 E-value=0 Score=369.81 Aligned_cols=358 Identities=15% Similarity=0.119 Sum_probs=225.6 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCC Q ss_conf 15785211582679999999999999999739925006543326776311563102343433202011122135544788 Q T0589 13 STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTG 92 (465) Q Consensus 13 ~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 92 (465) -+-.|++.|+|.|++++++|+++||+++.++||+||.||+|++.++|++||| +..+.++||.+ |.. T Consensus 36 ~~~~g~~~wlP~G~~v~~~ie~~ir~~~~~~Gy~EI~tP~l~~~eL~~~SGh-------------~d~~~~eMy~~-d~~ 101 (471) T 3a32_A 36 FTGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGH-------------IEFYRNNMYLF-DIE 101 (471) T ss_dssp HHCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCC-------------CTTGGGGSEEE-EET T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCC-------------HHHHCCCCCCE-ECC T ss_conf 5137422166787999999999999999985998998973577789877168-------------76743035545-438 Q ss_pred CCEEEECCCCHHHHHHHHHHHHH---HCC-CCCCEEEECCCCCCCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHH Q ss_conf 85578547760999999999875---157-74515775240026677----77753000000001352575217899999 Q T0589 93 SEARALKFDQTVPLAAYIARHLN---DLT-FPFARYQMDVVFRGERA----KDGRFRQFRQCDIDVVGREKLSLLYDAQM 164 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~~---~~~-~~~~~~~~g~~fR~~~~----~~~r~ref~q~~~~~f~~~~~~~~~~~e~ 164 (465) |+.++|||++|+++++++..... +++ .|+++||+|++||+|++ |..|.|||+|.++|+|+.+.+......+. T Consensus 102 ~~e~~LrPe~~~~~~~~~~~~~~~~~sy~~LPl~lyqig~~fR~E~~~~r~gl~R~ReF~q~da~~F~~~~e~~de~~~~ 181 (471) T 3a32_A 102 GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDV 181 (471) T ss_dssp TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHH T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCHHHHHCCCCEEEECCEEEECCCHHHHHHHHH T ss_conf 80463255788236578754323110134412553013526861344320112002415873348641551158999999 Q ss_pred HHHHH---HHHHHCCCCC--EEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH Q ss_conf 99999---9999739982--599972768899999872451037999999986330058578998887438898899999 Q T0589 165 PAIIT---EIFEAVNIGD--FVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKI 239 (465) Q Consensus 165 i~~~~---e~~~~lgl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465) +..+. ..+..+++.. +....+........-...+..+.+.. T Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 227 (471) T 3a32_A 182 FEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEG---------------------------------- 227 (471) T ss_dssp HHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHH---------------------------------- T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHH---------------------------------- T ss_conf 9999999999961287631122100232234543001576312567---------------------------------- Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCEEECHHHCCCCCCCCCEE Q ss_conf 864125788889999999887431112567888888999999998608986---------63231433406740012537 Q T0589 240 IDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPD---------KRFCIDLAIARGLNYYTGTV 310 (465) Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~d~~~~~~~~yytg~v 310 (465) ....+.. .+.. .....+... .....+....... ...|.. T Consensus 228 ------------~~~~~~~-------------~~~~------~~~~~~~~~~~~~~~~~~~~~k~d~~~~~~~-~~lgr~ 275 (471) T 3a32_A 228 ------------AEEALRE-------------AASR------INEKYGIDIVELEGEAAFYGPKLDFIMMVEE-SGVSKE 275 (471) T ss_dssp ------------HHHHHHH-------------HHHH------HHHHHCCEEEEETTCSBTTBCEEEEEEEEES-SSCEEE T ss_pred ------------HHHHHHH-------------HHHH------HCCCCCCCEEECCCCCCCCCCCCCEEECCCC-CCCCCE T ss_conf ------------7899998-------------7775------2545454236427620012455320110121-245640 Q ss_pred EEEEECCCCCCCCCCCCCCCC--CCHHHHCCCCCC---EEECCCHHHHHHH-HHHHHHCCCCCCCCCCEEEEEECC---- Q ss_conf 886333655444400477543--210320136534---4852200357899-987420245555687028998468---- Q T0589 311 YETTLIGHEALGSICSGGRYE--ELVGTFIGEKMP---GVGISIGLTRLIS-RLLKAGILNTLPPTPAQVVVVNMQ---- 380 (465) Q Consensus 311 fe~~~~~~~~~~~i~~ggryd--~li~~~~~~~~~---~v~~~~~~~~~~~-~~~~~~~~~~~~~~p~~V~v~~~~---- 380 (465) ++..+....... +.+++ ..+..-+....| ..+...+..+.+. +.......||.++||+||.|+|+. T Consensus 276 ~~~~t~~~~~~~----~~~fgl~yy~~~~~~~~~p~~~~~~~~gg~~R~i~~liE~~g~~~P~~LAP~qV~IIPi~~~~~ 351 (471) T 3a32_A 276 WQMGTIQFDFNL----PRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTGGE 351 (471) T ss_dssp EEEEEEEEESSH----HHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTTTCCCGGGCSCSEEEEEEECSST T ss_pred EECCCCCCHHHH----HHHCCCCEEEECCCCCCCHHHEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCHH T ss_conf 102333200100----1111440488327742001010024433442167788775067532113203589983256402 Q ss_pred --HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHCCCC-EEEEECHHHHHCCEEEEEECCCCCEEEECHH Q ss_conf --789999999999998769859997289-8977899999965897-9999860234388289998588865871489 Q T0589 381 --DELMPTYLKVSQQLRQAGLNVITNFEK-RQLGKQFQAADKQGIR-FCVIIGADEAAAQKSSLKDLQSGEQVEVALA 454 (465) Q Consensus 381 --~~~~~~a~~i~~~Lr~~gi~v~~d~~~-~sig~k~~~ad~~G~p-~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~ 454 (465) ++..++|.+|+++|+++||+|.+|+++ .+||+||++|+++|+| ++|+||++++++|+||||+||+++|.+++++ T Consensus 352 ~~~~~~e~A~~i~~~Lr~~gi~v~vDdr~~~~iGkKir~a~~~g~P~~~IiIG~kEle~~tVtVR~rd~~~~~~~~~~ 429 (471) T 3a32_A 352 VDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLA 429 (471) T ss_dssp THHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHCCEEEEEECCCCCCCCEEHH T ss_conf 479999999999999997899899988999866589999987699818999813456469899997888540335443 No 15 >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Probab=100.00 E-value=0 Score=362.96 Aligned_cols=437 Identities=16% Similarity=0.140 Sum_probs=244.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEECCCCCCCHHHHHHCCCCCH--HHHHHHHHCCHHHHHHH----- Q ss_conf 1578521158267999999999999999-973992500654332677631156310--23434332020111221----- Q T0589 13 STPSGFPEFLPSEKRLELYLLDTIRRVY-ESYGFTPIETPAVERLEVLQAKGNQGD--NIIYGLEPILPPNRQAE----- 84 (465) Q Consensus 13 ~~~~G~~d~~P~g~~~~~~i~~~~~~~~-~~~G~~ei~~P~i~~~~~~~~sg~~~~--~~~~~~~~~~~~~~~~~----- 84 (465) .-.+|+|||||+|+++++||+++||+.| .+.|++||++|+|+|.+||++|||.+. |.++++..+....+.+. T Consensus 88 gg~aG~YdygPlG~~v~~kIe~iwReemv~~~~~~Ev~~p~l~p~evwkaSGh~~~f~D~mv~~~~~~~r~raD~lle~~ 167 (693) T 2zt5_A 88 GGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAH 167 (693) T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEBSSSCCEEEHHHHHHHH T ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCHHHHHCCCCHHHCCCCCCHHH T ss_conf 54665405335389999999999999985416979943132489899973598531375476632455333477643157 Q ss_pred -------------------------------------------------------CCCC--CC----CCCCEEEECCCCH Q ss_conf -------------------------------------------------------3554--47----8885578547760 Q T0589 85 -------------------------------------------------------KDKS--GD----TGSEARALKFDQT 103 (465) Q Consensus 85 -------------------------------------------------------~~~~--~d----~~g~~~~Lrpd~t 103 (465) -+.| .| .......|||+.. T Consensus 168 ~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~r~p~~g~~~~~~r~refmmkt~~g~~~~~~~~lrpeTa 247 (693) T 2zt5_A 168 LQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETA 247 (693) T ss_dssp HHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHH T ss_conf 88875235566888888888886440024789999999728999886876665533354431012665543032057999 Q ss_pred HHHHHHHHHHHH--HCCCCCCEEEECCCCCCC---CCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHH-----HHHHHH Q ss_conf 999999999875--157745157752400266---7777753000000001352575217899999999-----999999 Q T0589 104 VPLAAYIARHLN--DLTFPFARYQMDVVFRGE---RAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI-----ITEIFE 173 (465) Q Consensus 104 ~~~~r~~~~~~~--~~~~~~~~~~~g~~fR~~---~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~-----~~e~~~ 173 (465) .++...+.+... ..+.|+..+|+|..||++ +.++.|.|||+|+++++|..+.......+..+.- ...... T Consensus 248 q~~f~~y~ri~~~~~~klpf~~AqiG~~frnEi~pr~~l~r~rEf~~~e~e~f~~p~~~~~~~~~~v~~~~~~~~~~~~~ 327 (693) T 2zt5_A 248 QGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQ 327 (693) T ss_dssp HHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHH T ss_conf 99999999999983878634898425566786664414660575316778523681555403343210000355660110 Q ss_pred HCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHH-----HHHHHHHCCCC- Q ss_conf 739982599972768899999872451037999999986330058578998887438898899-----99986412578- Q T0589 174 AVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQT-----QKIIDFVKIDG- 247 (465) Q Consensus 174 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~- 247 (465) .-+...... .+..++-.....+........+....+...+........... .....+ ++........| T Consensus 328 ~~~~t~~~~-----ti~eav~~~~i~~~~~~~~~~~~~~~l~~~g~~~~~lr~r~~-~~~e~a~ya~~~~d~e~~~~~G~ 401 (693) T 2zt5_A 328 VSGQSARKM-----RLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQH-MENEMAHYACDCWDAESKTSYGW 401 (693) T ss_dssp HTTCCCEEE-----EHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEEC-CGGGSCTTCSSEEEEEEEETTEE T ss_pred CCCCCCCCC-----CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEECC-CCHHHHHHHHHHHHHHCCCCCCC T ss_conf 147873401-----799998515504789999999999999981777556676315-51666555554445430366672 Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHCCCCCCCEEECHHH Q ss_conf ---------888999999988743111256-------------------7888888999999998608986632314334 Q T0589 248 ---------SVDDVLDKLKHLSQTLPESEQ-------------------FNLGVSELETVITGVRNLGVPDKRFCIDLAI 299 (465) Q Consensus 248 ---------~~~~~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~ 299 (465) ...+...........+..... ......+...+......... ......+..+ T Consensus 402 ~El~G~a~r~~~dL~~h~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~d~~~v~~~~~~~~~-~~~~~~~~~l 480 (693) T 2zt5_A 402 IEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDE-CYITEMEMLL 480 (693) T ss_dssp EEEEEEECCCSHHHHHHHHHHTCCCCEEEC-------------------------------------------------- T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCC T ss_conf 001030355667853113332234101011146524787642036443364321237778776530254-2322211222 Q ss_pred CCCCCCC---CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCC-EEECCCHHHHHHHHHHHHH------------C Q ss_conf 0674001---2537886333655444400477543210320136534-4852200357899987420------------2 Q T0589 300 ARGLNYY---TGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMP-GVGISIGLTRLISRLLKAG------------I 363 (465) Q Consensus 300 ~~~~~yy---tg~vfe~~~~~~~~~~~i~~ggryd~li~~~~~~~~~-~v~~~~~~~~~~~~~~~~~------------~ 363 (465) ..+..++ .|.+|++........... + ...+...+| +++.++|++|++.+..+.. + T Consensus 481 ~~~~~~~l~~~G~~fkLg~~y~~~~~~~--------~-~~~g~~~~P~mgcyGIGVsRilaAiiEq~~De~Gi~e~R~vL 551 (693) T 2zt5_A 481 NEKGEFTIETEGKTFQLTKDMINVKRFQ--------K-TLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFF 551 (693) T ss_dssp ----------------------------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEE T ss_pred CCCCCEEEEECCEEEEECHHHHHHHHHH--------H-CCCCCEECCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 3477356642671789654787765420--------1-357755343688832564189999999863521787301376 Q ss_pred CCCCCCCCCEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCC--EEE Q ss_conf 45555687028998468--78999999999999876985999728989778999999658979999860234388--289 Q T0589 364 LNTLPPTPAQVVVVNMQ--DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQ--KSS 439 (465) Q Consensus 364 ~~~~~~~p~~V~v~~~~--~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~--~vt 439 (465) .||.++||++|.|+|+. +++.+.|.+|++.|+++||+|.+||+++|||+||+++|+||||||||||+++++++ ||| T Consensus 552 ~wP~~IAP~kV~IlPL~k~de~~~~AeeLy~~L~~~GI~vllDDr~~siG~Kyar~DeIGiP~~ITVd~~tl~~~~~tVt 631 (693) T 2zt5_A 552 SFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTAT 631 (693) T ss_dssp CCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEE T ss_pred ECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCHHCCCCEEEEEECCCCCCCCCEEE T ss_conf 47987689579999686774069999999999997599489744999855765303031799699997885557898489 Q ss_pred EEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 99858886587148999999999639 Q T0589 440 LKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 440 ir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) ||+||||+|+||+++||.++|+++++ T Consensus 632 iR~Rdt~~q~rv~i~~~~~~i~~l~~ 657 (693) T 2zt5_A 632 LRDRDSMRQIRAEISELPSIVQDLAN 657 (693) T ss_dssp EEETTTCCEEEEETTTHHHHHHHHHT T ss_pred EEECCCCCEEEEEHHHHHHHHHHHHC T ss_conf 98469860799889999999999976 No 16 >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Probab=100.00 E-value=0 Score=334.82 Aligned_cols=344 Identities=15% Similarity=0.138 Sum_probs=242.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHH-HCCCCCHHHHHHHHHCCHHH Q ss_conf 63210246540157852115826799999999999999997399250065433267763-11563102343433202011 Q T0589 2 NAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQ-AKGNQGDNIIYGLEPILPPN 80 (465) Q Consensus 2 ~~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~-~sg~~~~~~~~~~~~~~~~~ 80 (465) ++|.|++++++.+++|++.|+|.|++++++|++++++.+.+.||+||.||+|.|.++|. .|| |+.. T Consensus 20 ~~i~~a~l~d~~~v~G~~~~~P~G~~i~~~I~~~i~~~~~~~G~~ev~~P~li~~~~l~k~sg-------------h~~~ 86 (477) T 1hc7_A 20 EVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAE-------------HVEG 86 (477) T ss_dssp HHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------------------- T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC-------------CHHH T ss_conf 999971874467888649978478999999999999999985998998975468899998867-------------7746 Q ss_pred HHHHCCCCCCCC----CCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC--CCCCCCEEEEEEEEEEEC Q ss_conf 122135544788----855785477609999999998751577-4515775240026677--777530000000013525 Q T0589 81 RQAEKDKSGDTG----SEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA--KDGRFRQFRQCDIDVVGR 153 (465) Q Consensus 81 ~~~~~~~~~d~~----g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~--~~~r~ref~q~~~~~f~~ 153 (465) +.++||.+++.+ ++.++|||++++.++.+++.+..+|++ |+++||+|++||+|.. |+.|+|||+|.++|+|+. T Consensus 87 f~~emf~v~~~~~~~~~~~~~LrPt~e~~~~~i~~~~i~SyrdLPlrl~q~~~~fR~E~~~~GllR~ReF~~~D~ht~~~ 166 (477) T 1hc7_A 87 FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHA 166 (477) T ss_dssp CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEES T ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHCCCCEEEECCCCCCCCEEEEEEEEEHHHHHC T ss_conf 07231888615753246520468857588999998414471106734443786467636786554455565220332103 Q ss_pred CCHHHHHHHHHHHHHH-HHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC Q ss_conf 7521789999999999-999973998259997276889999987245103799999998633005857899888743889 Q T0589 154 EKLSLLYDAQMPAIIT-EIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGIN 232 (465) Q Consensus 154 ~~~~~~~~~e~i~~~~-e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465) +.+.+...++.+.-++ .++..+..-..... .+...+ T Consensus 167 ~~~ea~~~~~~~~~~Y~~~~~~~~~~~~~~g-------------------------------~~~~~e------------ 203 (477) T 1hc7_A 167 TREEAEEEVRRMLSIYARLAREYAAIPVIEG-------------------------------LKTEKE------------ 203 (477) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-------------------------------ECCTTT------------ T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-------------------------------CCCCCC------------ T ss_conf 1777889999999999997541144311036-------------------------------531323------------ Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEE Q ss_conf 88999998641257888899999998874311125678888889999999986089866323143340674001253788 Q T0589 233 PEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYE 312 (465) Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe 312 (465) ...+. .....+.......+++ ..|++|. T Consensus 204 -----------~~~ga---------------------------------------~~~~~~~~~~~d~r~~--q~gt~~~ 231 (477) T 1hc7_A 204 -----------KFAGA---------------------------------------VYTTTIEALMKDGKAL--QAGTSHY 231 (477) T ss_dssp -----------SCTTS---------------------------------------SEEEEEEEECTTSCEE--EEEEEEE T ss_pred -----------CCCCC---------------------------------------CCCCCHHHHHHHHHHH--CCCCHHC T ss_conf -----------33431---------------------------------------3345188752332331--2573420 Q ss_pred EEECCCCCCCC--CCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHH-----HHHCCCCCCCCCCEEEEEECCH---- Q ss_conf 63336554444--004775432103201365344852200357899987-----4202455556870289984687---- Q T0589 313 TTLIGHEALGS--ICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLL-----KAGILNTLPPTPAQVVVVNMQD---- 381 (465) Q Consensus 313 ~~~~~~~~~~~--i~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~V~v~~~~~---- 381 (465) .....+..... ....|.- ..+...+.+++. |.+.++. ..++.+|+++||+||.|+|+.. T Consensus 232 lg~~~sk~fdi~y~d~~gk~---------~~~h~~~~G~~e-R~ig~lie~~~d~~gl~~P~~lAP~Qv~Iipi~~~~~~ 301 (477) T 1hc7_A 232 LGENFARAFDIKFQDRDLQV---------KYVHTTSWGLSW-RFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESR 301 (477) T ss_dssp EETHHHHHTTCEEECTTSCE---------EECEEEEEEEET-HHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTH T ss_pred CCHHHHHHCCCEEECCCCCE---------EEEEECCCCHHH-HHHHHHHHHHCCCCCCCCCHHCCCCEEEEEECCCCCCH T ss_conf 23223653476798899988---------865403651357-79999999957887786891007223899743451004 Q ss_pred -HHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHH Q ss_conf -899999999999987698599972898-977899999965897999986023438828999858886587148999999 Q T0589 382 -ELMPTYLKVSQQLRQAGLNVITNFEKR-QLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEE 459 (465) Q Consensus 382 -~~~~~a~~i~~~Lr~~gi~v~~d~~~~-sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~ 459 (465) ...++|.+|++.|.+.||+|.+||++. |+|+|+++|+++|+|++|+||++++++|+|+|+.|+++++ .|+++++++. T Consensus 302 ~~~~~~a~~l~~~L~~~~irv~~Ddr~~~s~g~K~~~~e~~gvP~~i~iG~ke~e~~~v~v~rR~~~~~-~v~~~~~~~~ 380 (477) T 1hc7_A 302 ERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKE-TLPLAALPEA 380 (477) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTSCCC-EEEGGGHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECCHHHCCCEEEEEECCCCCC-CCCHHHHHHH T ss_conf 899999999999997510222212445668789999998639988999775142089799998689971-2449999999 Q ss_pred HHHHC Q ss_conf 99963 Q T0589 460 IKRRL 464 (465) Q Consensus 460 l~~~l 464 (465) |+++| T Consensus 381 i~~~L 385 (477) T 1hc7_A 381 LPGKL 385 (477) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 17 >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Probab=100.00 E-value=0 Score=330.17 Aligned_cols=328 Identities=17% Similarity=0.267 Sum_probs=252.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHH Q ss_conf 32102465401578521158267999999999999999973992500654332677631156310234343320201112 Q T0589 3 AMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQ 82 (465) Q Consensus 3 ~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~ 82 (465) .+.|-.++....|+|+.|++|..+..+++|++.++++|..|||++|.||+|++.++|.++.+..+ .... T Consensus 13 ~~~~m~~~~~~lP~g~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~~~~~-----------~~~~ 81 (344) T 1z7m_A 13 IEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGK-----------TFNQ 81 (344) T ss_dssp ---------CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSS-----------CCCT T ss_pred CCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCC-----------CCHH T ss_conf 20354644133989534429999999999999999999986997988884414777642478865-----------2003 Q ss_pred HHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHH Q ss_conf 21355447888557854776099999999987515774515775240026677777530000000013525752178999 Q T0589 83 AEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDA 162 (465) Q Consensus 83 ~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~ 162 (465) ++||+|.|++|+.++||||+|+++||+++++. ...|.|+||+|+|||+++++.+|+|||+|+++|+|+.+ +..+|+ T Consensus 82 ~~~~~f~D~~g~~l~LRpDlT~~iaR~~a~~~--~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~G~EiiG~~--~~~aD~ 157 (344) T 1z7m_A 82 EKMFQFIKHEGQSITLRYDFTLPLVRLYSQIK--DSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGES--ADKSEL 157 (344) T ss_dssp TSCCEEECTTCCEEEECCCSHHHHHHHHHTCC--SCCCEEEEEEEECCCCCC-------CCEEEEEEEESSC--HHHHHH T ss_pred HHCEEEECCCCCEEEECCCCCCHHHHHHHHHC--CCCHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCC--CCHHHH T ss_conf 02035116998779857764469999998720--46723311012033004433444310102322000033--302567 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999999739982599972768899999872451037999999986330058578998887438898899999864 Q T0589 163 QMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDF 242 (465) Q Consensus 163 e~i~~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (465) |++.++.++++.+|++++++.+||..++..++.......... .+.+. +..............+..........+ T Consensus 158 Eii~l~~~~l~~lgl~~~~i~i~~~~~~~~ll~~~~~~~~~~---~~~l~---~k~~~~l~~~~~~~~~~~~~~~~l~~~ 231 (344) T 1z7m_A 158 EILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELL---TELLL---KKDLSGLNAFIEKNNFSKELRGLLKEI 231 (344) T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEEHHHHHHHHHHTTTCHHHH---HHHHH---TTCHHHHHHHHTTSCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHH---HHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 789999999997521343431000004676666420011224---66765---420210577876524788999987752 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 12578888999999988743111256788888899999999860898663231433406740012537886333655444 Q T0589 243 VKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALG 322 (465) Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~ 322 (465) . ...........+. .......+..+..+..++..++.. ..+.+|++++++++||||++|+.+..+.+ . T Consensus 232 ~-~~~~~~~l~~~~~--------~~~~~~~~~~l~~l~~~~~~l~~~-~~i~iD~~~~rgl~YYtG~vFe~~~~~~~--~ 299 (344) T 1z7m_A 232 F-ITNELSRLENLVT--------NTKDDVLISSFDQLKEFSEKLSMI-KPIIIDLGMVPKMDYYTDLMFKAYSSAAN--Q 299 (344) T ss_dssp T-TCCCHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTT-SCCEECTTCCCSSTTCCSEEEEEEETTEE--E T ss_pred C-CCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCC--C T ss_conf 0-0003678999875--------100688887777776789986113-43366876688975779828999978988--8 Q ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCC Q ss_conf 400477543210320136534485220035789998742024 Q T0589 323 SICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGIL 364 (465) Q Consensus 323 ~i~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 364 (465) ++++|||||+|++.|+ ...||||++++.+++..++...... T Consensus 300 ~i~~GGRYD~L~~~fg-~~~pAvGfai~ld~l~~~l~~~~~~ 340 (344) T 1z7m_A 300 PILSGGRYDQLLSNFQ-EEAFAIGFCCHMDTILKALERQELE 340 (344) T ss_dssp EEEEEEECHHHHHTSS-SCCCCEEEEEEHHHHHHHHHHHHC- T ss_pred EEEECCCHHHHHHHHC-CCCCEEEEEEEHHHHHHHHHHCCCC T ss_conf 2676834779999719-9987799995699999999866898 No 18 >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Probab=100.00 E-value=0 Score=344.63 Aligned_cols=364 Identities=11% Similarity=0.022 Sum_probs=234.8 Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHHH--HCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHH-------H Q ss_conf 785211-582679999999999999999--739925006543326776311563102343433202011122-------1 Q T0589 15 PSGFPE-FLPSEKRLELYLLDTIRRVYE--SYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQA-------E 84 (465) Q Consensus 15 ~~G~~d-~~P~g~~~~~~i~~~~~~~~~--~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~-------~ 84 (465) ..|+|| |||+|+.+++||++.||+.|. +.+.+.+++ ++.++|++|||+..+...+|..+....... . T Consensus 50 ~~g~~~~yGp~G~~lk~ni~~~w~~~~v~~~~~~~~~d~---~~~~~~~asgh~~~f~~~~~~~~~~~~~~~~~~~~~~~ 126 (454) T 1g5h_A 50 LSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDS---LHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLV 126 (454) T ss_dssp HHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCC---CSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC T ss_conf 102477777078999999999999986213587885657---78876767874556554556433540032113203312 Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHC--CCCCCEEEECCCCC---CC---CCCCCCCCEEEEEEEEEEECCCH Q ss_conf 355447888557854776099999999987515--77451577524002---66---77777530000000013525752 Q T0589 85 KDKSGDTGSEARALKFDQTVPLAAYIARHLNDL--TFPFARYQMDVVFR---GE---RAKDGRFRQFRQCDIDVVGREKL 156 (465) Q Consensus 85 ~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~--~~~~~~~~~g~~fR---~~---~~~~~r~ref~q~~~~~f~~~~~ 156 (465) |+. .........|||+.++++.-.+.+.+... +.|++++|||++|| ++ +.|+.|+|||+|+++++|+.+++ T Consensus 127 ~~~-~~~g~~~~yLRPEtaQgif~nF~~~~~~~~rkLPfgiaQIGk~FR~ErnEi~pr~gl~R~REF~q~e~e~F~~p~q 205 (454) T 1g5h_A 127 AFL-ENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRT 205 (454) T ss_dssp HHH-HHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHH T ss_pred CCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEEECCCH T ss_conf 552-5767501104802212699989999985367788365776300046666766776603656355223678877631 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHH Q ss_conf 17899999999999999739982599972768899999872451037999999986330058578998887438898899 Q T0589 157 SLLYDAQMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQT 236 (465) Q Consensus 157 ~~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (465) ....-...+......+..+|+....+++.+... ........ .......++.++. ++ T Consensus 206 ~~~~~~~~~~~~~~~~~~lGi~~~~lr~~~~~~------~~~~~~~d-------~~~~~~~G~~E~~------gi----- 261 (454) T 1g5h_A 206 SSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQD------ELGRKGSK-------LYYSFPWGKEPIE------TL----- 261 (454) T ss_dssp HHHHHHHHHHHHHHHHHTTCSSGGGEEEEEEEC------TTSCEEEE-------EEEEETTEEEEEE------EE----- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH------HHCCCCHH-------HHHCCCCCHHHHH------HH----- T ss_conf 248999999999999998478800388711561------31463034-------3320571232353------54----- Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEEC Q ss_conf 99986412578888999999988743111256788888899999999860898663231433406740012537886333 Q T0589 237 QKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLI 316 (465) Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~ 316 (465) ....+. +.. . ..+......... .....+...+++.... T Consensus 262 -------a~r~d~-dl~---------------------------~---~~~~s~~~~~~~----~~~~~~~p~vie~s~g 299 (454) T 1g5h_A 262 -------WNLGDQ-ELL---------------------------H---TYPGNVSTIQGR----DGRKNVVPCVLSVSGD 299 (454) T ss_dssp -------EEEESH-HHH---------------------------H---HSTTCGGGSCEE----ETTEEECCEEEEEEEE T ss_pred -------HCCCCC-CCC---------------------------H---HHHCCCCCCCCC----CCCCCEECCEEEEEEC T ss_conf -------335672-200---------------------------1---210244433233----2234300333688613 Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC---HHHHHHHHHHHHH Q ss_conf 6554444004775432103201365344852200357899987420245555687028998468---7899999999999 Q T0589 317 GHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQ---DELMPTYLKVSQQ 393 (465) Q Consensus 317 ~~~~~~~i~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~v~~~~---~~~~~~a~~i~~~ 393 (465) ..... +..++..+ .................+.+|+++||++|.|+|+. +++.++|.+|+++ T Consensus 300 ~~r~~--------~~~l~~~y--------~~~~~~~~~~~~~~R~~lklPp~LAPiqVaIlPl~~~keel~e~A~~I~~~ 363 (454) T 1g5h_A 300 VDLGT--------LAYLYDSF--------QLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNE 363 (454) T ss_dssp HHHHH--------HHHHHHHE--------EC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHH T ss_pred CCCCC--------CEEEEEHH--------HCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 66410--------03440100--------114544334655135675327211774289996678858899999999999 Q ss_pred HHHCCCEEEE---ECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 9876985999---7289897789999996589799998602343882899985888658714899999999963 Q T0589 394 LRQAGLNVIT---NFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 394 Lr~~gi~v~~---d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) |+++||++.+ |++++|||+||+++|++|||||||||++|++|||||||+|||++|++|+++||+++|.++| T Consensus 364 L~~~gi~v~~~~~dd~~~sIGkryrr~DeiGiPy~ItVd~~tled~tVTVR~RDt~~Q~rV~I~el~~~l~~~l 437 (454) T 1g5h_A 364 LLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYL 437 (454) T ss_dssp HHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHH T ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 99879916752045778886089897777189889998888301897999987888168889999999999998 No 19 >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Probab=100.00 E-value=1.1e-42 Score=304.47 Aligned_cols=383 Identities=14% Similarity=0.113 Sum_probs=229.2 Q ss_pred CCCCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCEECCCCCCCHHHHHHCCCCCH--HHHHH Q ss_conf 3210246540157------8521158267999999999999999--973992500654332677631156310--23434 Q T0589 3 AMAKNDKINFSTP------SGFPEFLPSEKRLELYLLDTIRRVY--ESYGFTPIETPAVERLEVLQAKGNQGD--NIIYG 72 (465) Q Consensus 3 ~~~~~~~~~~~~~------~G~~d~~P~g~~~~~~i~~~~~~~~--~~~G~~ei~~P~i~~~~~~~~sg~~~~--~~~~~ 72 (465) +|.+++-+. |+. +|+|+|||+|.+++++|+++||++| .+.|++||.+|+|.|.++|++|||.+. |.+++ T Consensus 11 l~~r~Gfi~-~~~ei~~~~aGiY~~lPlG~rvl~KIe~iiReeM~~~~~g~~Ei~~P~l~paeLWk~SGr~e~~~d~~~~ 89 (505) T 1ati_A 11 LCKRRGFIF-QSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD 89 (505) T ss_dssp HHHHTTSEE-ETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEE T ss_pred HHHHCCCEE-CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCHHH T ss_conf 998578740-4621047702795458408999999999999997644488089762334998999758995313743555 Q ss_pred HHHCCHHHHHHHCCC----------------------------------------------------------------- Q ss_conf 332020111221355----------------------------------------------------------------- Q T0589 73 LEPILPPNRQAEKDK----------------------------------------------------------------- 87 (465) Q Consensus 73 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 87 (465) +......++.+..+. T Consensus 90 ~~~~~dr~r~d~~l~~t~eE~i~kd~~s~~~~~e~l~~~y~~~~~ay~~i~~r~~~~~~~~~~sg~~~~~~~~~~~~~~~ 169 (505) T 1ati_A 90 NRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMF 169 (505) T ss_dssp C--------------------------------------------------------------------CCCCEEEECBE T ss_pred CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC T ss_conf 24343010421213430355553244433200554899999987668989877765165577667777756530102345 Q ss_pred -----CCCCCCCEEEECCCCHHHHHHHHHHHHH--HCCCCCCEEEECCCCCCCCC---CCCCCCEEEEEEEEEEECCCHH Q ss_conf -----4478885578547760999999999875--15774515775240026677---7775300000000135257521 Q T0589 88 -----SGDTGSEARALKFDQTVPLAAYIARHLN--DLTFPFARYQMDVVFRGERA---KDGRFRQFRQCDIDVVGREKLS 157 (465) Q Consensus 88 -----~~d~~g~~~~Lrpd~t~~~~r~~~~~~~--~~~~~~~~~~~g~~fR~~~~---~~~r~ref~q~~~~~f~~~~~~ 157 (465) ..........+++..+............ ....|..+++++.+||++.. +..|.|+|+|.+.+.|....+. T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~e~~~~~~~~r~r~~~~~~~~~~~~~~~~ 249 (505) T 1ati_A 170 QDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGED 249 (505) T ss_dssp EEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGH T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCHHHHHHHCCHHCCCCHHH T ss_conf 54312223542355412112453016777777665315872025663202225453103310123443011101472134 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 78999999999999997399825999727688999998724510379999999863300585789988874388988999 Q T0589 158 LLYDAQMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQ 237 (465) Q Consensus 158 ~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (465) ............+.+...+.....+.+....... ......... ...... T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~---~~~~~~------ 298 (505) T 1ati_A 250 EYWHRYWVEERLKWWQEMGLSRENLVPYQQPPES----------------------SAHYAKATV---DILYRF------ 298 (505) T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTT----------------------SCTTCSEEE---EEEEEE------ T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCH----------------------HHHHHHHHH---HHHCCC------ T ss_conf 7899999999999987613552113421112203----------------------455688888---886089------ Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECC Q ss_conf 99864125788889999999887431112567888888999999998608986632314334067400125378863336 Q T0589 238 KIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIG 317 (465) Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~ 317 (465) .+..... ......... . .......+ .. ..+.+|+...+. T Consensus 299 ---~~~~~~~-------------~~~~~~~~~-----~----~~~~~~~~--~~--------------~~~~~~~lg~~y 337 (505) T 1ati_A 299 ---PHGSLEL-------------EGIAQRTDF-----D----LGSHTKDQ--EA--------------LGITARVLRNEH 337 (505) T ss_dssp ---TTEEEEE-------------EEEEECTTH-----H----HHHHCSST--TT--------------TTCCSCCCCCSC T ss_pred ---CCCCCCC-------------CEECCCCCC-----C----CCCCCCCC--CC--------------CCEEEEECCCCC T ss_conf ---8450014-------------010356864-----6----55411124--53--------------302259614434 Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHH--------------HHCCCCCCCCCCEEEEEECC--- Q ss_conf 5544440047754321032013653448522003578999874--------------20245555687028998468--- Q T0589 318 HEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLK--------------AGILNTLPPTPAQVVVVNMQ--- 380 (465) Q Consensus 318 ~~~~~~i~~ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~p~~V~v~~~~--- 380 (465) +..... .|+.-.. ......+.+.+++..+....... .+..||.++||+||.|+|++ T Consensus 338 s~~~~~-----~~~~~~g--k~~~~~m~~~gigv~r~~~~iie~~~~~~~~~~~~d~~gi~wP~~IAPfqV~Iipl~~~~ 410 (505) T 1ati_A 338 STQRLA-----YRDPETG--KWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNR 410 (505) T ss_dssp CCSCCC-----EECSSSC--CEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSC T ss_pred CCCCEE-----EEECCCC--CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCC T ss_conf 541100-----4567889--886735755676755156677776545443023102234008987487369999656886 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHH---------CCEEEEEECCCCCEEEE Q ss_conf 789999999999998769859997289897789999996589799998602343---------88289998588865871 Q T0589 381 DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAA---------AQKSSLKDLQSGEQVEV 451 (465) Q Consensus 381 ~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~---------~~~vtir~r~t~~q~~v 451 (465) ++..++|.+||++|.++||+|.+||++.|||+||++||++|+||+||||+++++ +|+||||+|+|++|.+| T Consensus 411 ~e~~~~Ae~ly~~L~~~Gi~VllDDR~e~~G~Kf~dadliGiP~~i~V~~~~l~~g~g~~~~~~~~V~ir~R~t~~~~~v 490 (505) T 1ati_A 411 PEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRL 490 (505) T ss_dssp HHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEE T ss_conf 88999999999999978995899889999789998616508998999936620135565433388699998898836898 Q ss_pred CHHHHHHHHHHHCC Q ss_conf 48999999999639 Q T0589 452 ALADLAEEIKRRLT 465 (465) Q Consensus 452 ~~~el~~~l~~~l~ 465 (465) +++||+++|+++|. T Consensus 491 ~i~e~~~~l~~~lk 504 (505) T 1ati_A 491 HVDELEGFLRERLR 504 (505) T ss_dssp EHHHHHHHHHHHHC T ss_pred EHHHHHHHHHHHCC T ss_conf 99999999998628 No 20 >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Probab=100.00 E-value=1.6e-34 Score=249.31 Aligned_cols=266 Identities=19% Similarity=0.167 Sum_probs=194.0 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH Q ss_conf 99999999999997399250065433267763115631023434332020111221355447888557854776099999 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAA 108 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r 108 (465) .+++.+++. ...++||++|.||++++.+... ...|.|++|+.++||||+|++++| T Consensus 6 ~~~~~~~~~-~~~k~Gy~~i~tP~~E~~~~~~------------------------~~~f~D~~g~~l~LRpD~T~~iaR 60 (275) T 1usy_A 6 FEKVFSFYS-KATKKGFSPFFVPALEKAEEPA------------------------GNFFLDRKGNLFSIREDFTKTVLN 60 (275) T ss_dssp HHHHHHHHH-HHHHTTCEECCCCSEEECSSCC------------------------SSCEEETTSCEEEECCCHHHHHHH T ss_pred HHHHHHHHH-HHHHCCCCEEECCCEEEEECCC------------------------CCEEECCCCCEEEECCCCCHHHHH T ss_conf 889999999-9997599564676522210200------------------------564385999999978978599999 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH Q ss_conf 99998751577451577524002667777753000000001352575217899999999999999739982599972768 Q T0589 109 YIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRK 188 (465) Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~ 188 (465) +++++. .+.|.|+||+|+|||++++ +.|||+|+++|+|+.+ +..+|+|++.++.++++.++++++++.+||.+ T Consensus 61 ~~~~~~--~~~~~r~~Y~g~VfR~~~~---~~re~~Q~G~EiiG~~--~~~aDaEii~l~~~~l~~lg~~~~~i~ig~~~ 133 (275) T 1usy_A 61 HRKRYS--PDSQIKVWYADFVYRYSGS---DLVAEYQLGLEKVPRN--SLDDSLEVLEIIVESASEFFEGPVIVEIGHTG 133 (275) T ss_dssp HHTTCT--TCCCEEEECCEEEEEEETT---EEEEEEEEEEEEESCC--SHHHHHHHHHHHHHHHHHHCCSCEEEEEEETT T ss_pred HHHHHC--CCCCEEEEEEEEEEECCCC---CCCCEEECCEEEEECH--HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCH T ss_conf 999708--9988689986007982798---6652022470265111--37788999999999998613366688716804 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999987245103799999998633005857899888743889889999986412578888999999988743111256 Q T0589 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQ 268 (465) Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (465) ++..+++.++.+ ....+...++. ......+........+..............+.. ..+..... T Consensus 134 i~~~ll~~l~~~--~~~~l~~~l~~---k~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~ 197 (275) T 1usy_A 134 VYEDLLKEIPKD--LHEKVLNLIDT---KNLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSP-----------EHLKTMDL 197 (275) T ss_dssp HHHHHHTTSCGG--GHHHHHHHHHT---TCHHHHHHHHHHTCCCCTHHHHHHHHHHHCCSG-----------GGGGTSCC T ss_pred HHHHHHHHCCHH--HHHHHHHHHHH---CCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCH-----------HHHHHHHH T ss_conf 677776512557--78999999874---066779998876599977889875200004678-----------77763788 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECC Q ss_conf 78888889999999986089866323143340674001253788633365544440047754321032013653448522 Q T0589 269 FNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGIS 348 (465) Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggryd~li~~~~~~~~~~v~~~ 348 (465) .....+++..+...+...+. ...+.+|++++|+++||||++|+.+.++.+ .++++|||||++.+. ++|++ T Consensus 198 ~~~~~~~l~~~~~~l~~~~~-~~~i~~Dl~~vrgl~YYtG~vFe~~~~~~~--~~Ia~GGRYD~l~e~-------g~G~s 267 (275) T 1usy_A 198 PLSVREDLLSASSFLQEKFP-TVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVNGEK-------GVGGS 267 (275) T ss_dssp CHHHHHHHHHHHHHHHHHCS-SSEEEECCCCGGGGGTCSSEEEEEEETTTT--EEEEEEEEEEETTEE-------EEEEE T ss_pred HHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCEEEEEEECCCC--CEEEECCCCCCCCCE-------EEEEE T ss_conf 88789999999999984286-860999467558855569839999989988--968870521677787-------04589 Q ss_pred CHHH Q ss_conf 0035 Q T0589 349 IGLT 352 (465) Q Consensus 349 ~~~~ 352 (465) ++.+ T Consensus 268 i~ld 271 (275) T 1usy_A 268 IFLE 271 (275) T ss_dssp EEEE T ss_pred EEEC T ss_conf 9731 No 21 >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Probab=99.84 E-value=4.8e-21 Score=158.59 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=134.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHH Q ss_conf 632102465401578521158267999999999999999-9739925006543326776311563102343433202011 Q T0589 2 NAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVY-ESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPN 80 (465) Q Consensus 2 ~~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~-~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~ 80 (465) ++|.|.+.++..+-+|++.|+|.|++++++|++++++.+ .+.||+||.+|.|.+.++|++||| ++. T Consensus 207 ee~~k~~~ik~~~~~G~~~~~P~g~~L~r~Le~~~~e~~~~k~Gy~ev~~P~l~~~el~~~sGh-------------~~~ 273 (522) T 2cja_A 207 QAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGH-------------AKG 273 (522) T ss_dssp HHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTG-------------GGT T ss_pred HHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCC-------------CCC T ss_conf 9998678742267586379947799999999999999988864987977984627999955798-------------244 Q ss_pred HHHHCCCCCCC------------------------------CCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECC- Q ss_conf 12213554478------------------------------8855785477609999999998751577-451577524- Q T0589 81 RQAEKDKSGDT------------------------------GSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDV- 128 (465) Q Consensus 81 ~~~~~~~~~d~------------------------------~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~- 128 (465) +.++||...+. .+..++|+|++|+++..++.....++++ |+|+|+++. T Consensus 274 f~e~m~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~L~P~~c~~~~~~~~~~~~s~~dLPir~~~~~~~ 353 (522) T 2cja_A 274 VYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGT 353 (522) T ss_dssp CGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSE T ss_pred CCHHHEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE T ss_conf 63654574156666521000110111012334321111224566567713671889999847636843516998600644 Q ss_pred CCCCCC---CCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH-HCCCCCEEE Q ss_conf 002667---777753000000001352575217899999999999999-739982599 Q T0589 129 VFRGER---AKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFE-AVNIGDFVI 182 (465) Q Consensus 129 ~fR~~~---~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~-~lgl~~~~~ 182 (465) .||++. .|+.|+|||+|.++++|+.+++......+++..+.++|. .++++.... T Consensus 354 ~~R~E~g~~~GL~RvreF~~~E~~~~~t~e~~~~~~~~~~~~~~~i~~~~L~L~~r~~ 411 (522) T 2cja_A 354 SHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKA 411 (522) T ss_dssp EECCCSSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCCEEEE T ss_pred EEEECCCCCCCHHEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 7865366776502034424520799768899999999999999999999719806993 No 22 >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Probab=99.76 E-value=5.6e-18 Score=137.97 Aligned_cols=147 Identities=13% Similarity=0.134 Sum_probs=116.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECC Q ss_conf 58267999999999999999973992500654332677631156310234343320201112213554478885578547 Q T0589 21 FLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKF 100 (465) Q Consensus 21 ~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrp 100 (465) +.|.+......|++.+++.|..+||.||+||+|++.++|.++++.... .....+ +..+..++||| T Consensus 65 ~~~~~~~~~~~l~~~ir~~f~~~Gf~eV~tP~i~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~~Lrp 129 (288) T 3dsq_A 65 RTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDH-----------PLFSQV----FWLDGKKCLRP 129 (288) T ss_dssp HHTTSSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC-------------CCTTTS----CEEETTEEECS T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCC-----------HHHHHH----HHHHHHHCCCC T ss_conf 153545289999999999999888989986477566776426875444-----------034555----55301113686 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 76099999999987515774515775240026677777530000000013525752178999999999999997399825 Q T0589 101 DQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDF 180 (465) Q Consensus 101 d~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lgl~~~ 180 (465) ++|+++++..+......+.|.|+||+|++||++..+..|.|||+|.++++++.+... .+.++..++.++++.+|++++ T Consensus 130 ~~~~~~~~~~~~~~~~~~~p~r~~~~g~vfR~e~~~~~~~~eF~q~e~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~ 207 (288) T 3dsq_A 130 MLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEE--RHQRLEDMARWVLEAAGIREF 207 (288) T ss_dssp CSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGG--HHHHHHHHHHHHHHHHTCCCC T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHH--HHHHHHHHHHHHHHHCCCCCC T ss_conf 575999999998640325784799971667678788987772488579999298899--999999999999998599641 Q ss_pred EEEE Q ss_conf 9997 Q T0589 181 VIRI 184 (465) Q Consensus 181 ~~~~ 184 (465) .+.. T Consensus 208 ~~~~ 211 (288) T 3dsq_A 208 ELVT 211 (288) T ss_dssp EEEE T ss_pred EEEE T ss_conf 7884 No 23 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=99.64 E-value=2.7e-15 Score=119.86 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=141.4 Q ss_pred CCCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH Q ss_conf 10246540157-----8521158267999999999999999973992500654332677631156310234343320201 Q T0589 5 AKNDKINFSTP-----SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 5 ~~~~~~~~~~~-----~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~ 79 (465) .+-+++++... +|||.|.+.|+++.+.|++++.+...+.||.+|.+|.|...+++..+|+ ++ T Consensus 146 e~l~l~Dfe~~~kvsGsrf~~l~g~gA~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGq-------------lp 212 (425) T 2dq3_A 146 ERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQ-------------LP 212 (425) T ss_dssp HHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSC-------------TT T ss_pred HHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCC-------------CC T ss_conf 87387210011443177753357718999999999999775332665652760218999986278-------------83 Q ss_pred HHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC-------CCCCCCEEEEEEEEEE Q ss_conf 1122135544788855785477609999999998751577-4515775240026677-------7775300000000135 Q T0589 80 NRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA-------KDGRFRQFRQCDIDVV 151 (465) Q Consensus 80 ~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~-------~~~r~ref~q~~~~~f 151 (465) ...++||+.. +..++|.|+.+++++.++....-++.+ |+|++..+++||.|-+ |+.|+++|++.+...| T Consensus 213 ~f~e~~y~i~---~~~~~LipTaEv~l~~~~~~~il~~~~LPir~~~~s~cfR~Eags~g~d~~Gl~RvHqF~KvE~~~~ 289 (425) T 2dq3_A 213 KFEEDLYKCE---RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKI 289 (425) T ss_dssp TTGGGSCBCT---TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEE T ss_pred CCHHHHHCCC---CCCCEECCCCCCCHHEEECCCEECHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEE T ss_conf 1044531246---8640231334663110112424146657845022488778433456743106887532010306774 Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 25752178999999999999997399825999727688 Q T0589 152 GREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 152 ~~~~~~~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) +.++++...--+++..+.++++.|+++..++.++..++ T Consensus 290 ~~pe~s~~~~e~l~~~~~~i~~~L~lpyrvv~l~~~dl 327 (425) T 2dq3_A 290 VHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDL 327 (425) T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 14303799999999999999997488718998347787 No 24 >2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* Probab=99.62 E-value=1.1e-14 Score=115.80 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=107.9 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH Q ss_conf 99999999999997399250065433267763115631023434332020111221355447888557854776099999 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAA 108 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r 108 (465) +..+++.+|+.|...||.||+||+|++.++|.++|+...+ .++...+..+..++|||++|++.++ T Consensus 80 ~~~i~~~ir~~f~~~Gf~Ev~TP~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~lr~~~~p~~~~ 144 (291) T 2zin_A 80 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDT---------------ELSKQIFRVDKNFCLRPMLAPNLYN 144 (291) T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTS---------------SGGGGCCEETTTEEECSCSHHHHHH T ss_pred HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCC---------------CCCCCEECCCCCCCCCCCCCCHHHH T ss_conf 9999999999999878999986517871322246887673---------------3101061578422456556843889 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 999987515774515775240026677777530000000013525752178999999999999997399825 Q T0589 109 YIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDF 180 (465) Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lgl~~~ 180 (465) .+.....+...|.|+|++|++||++..+..|.+||+|.+++.++.... . +++..++.++++.+|+... T Consensus 145 ~~~~~~~~~~~p~r~f~ig~vfR~e~~~~~h~~eF~q~e~~~~~~~~~--~--~dl~~~~~~~~~~lg~~~~ 212 (291) T 2zin_A 145 YLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT--R--ENLESIITDFLNHLGIDFK 212 (291) T ss_dssp HHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCC--H--HHHHHHHHHHHHHHTCCCE T ss_pred HHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCC--H--HHHHHHHHHHHHHCCCCEE T ss_conf 989888634786469886014443026788765158999999899998--9--9999999999997489288 No 25 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Probab=99.44 E-value=2e-12 Score=100.51 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=129.9 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCE Q ss_conf 85211582679999999999999999739925006543326776311563102343433202011122135544788855 Q T0589 16 SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEA 95 (465) Q Consensus 16 ~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 95 (465) +|||.+.+.|+++-+.|.+++.+...+.||.+|.+|.+...+++..+|+ .+...+.+|... +.. T Consensus 265 srfy~l~g~~A~Le~AL~~f~ld~~~~~gy~~v~~P~~v~~~~~~gtG~-------------lp~f~~~~y~~~---~~~ 328 (536) T 3err_A 265 SRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGH-------------FPAYRDQVWAIA---ETD 328 (536) T ss_dssp SSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTC-------------TTTTGGGCCEET---TTT T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCC-------------CCCCHHHHHHHC---CHH T ss_conf 8769993859999999999999999760450230102224665522247-------------853024555420---023 Q ss_pred EEECCCCHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCC-------CCCCCCEEEEEEEEEEECCCHH--HHHHHHHH Q ss_conf 78547760999999999875157-74515775240026677-------7775300000000135257521--78999999 Q T0589 96 RALKFDQTVPLAAYIARHLNDLT-FPFARYQMDVVFRGERA-------KDGRFRQFRQCDIDVVGREKLS--LLYDAQMP 165 (465) Q Consensus 96 ~~Lrpd~t~~~~r~~~~~~~~~~-~~~~~~~~g~~fR~~~~-------~~~r~ref~q~~~~~f~~~~~~--~~~~~e~i 165 (465) ++|.|+.+.+++.++....-+.. .|.+++.++++||+|.+ |+.|+++|+..+..+++.+.+. ....-+.+ T Consensus 329 ~~LipTaEv~l~~~~~~~i~~~~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~~~~e~s~~~~~~~l 408 (536) T 3err_A 329 LYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 408 (536) T ss_dssp EEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH T ss_pred HHCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECCCCHHHHHHHHHHHH T ss_conf 10156664203445407547486589765546982455556557544213331343148999853651345799999999 Q ss_pred HHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 999999997399825999727688 Q T0589 166 AIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 166 ~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) ..+.+++..|+++.-++.+...++ T Consensus 409 ~~~e~i~~~L~lpyrvv~~~~~dl 432 (536) T 3err_A 409 ENAEEILRLLELPYRLVEVATGDM 432 (536) T ss_dssp HHHHHHHHHTTCCEEEEECCTTTS T ss_pred HHHHHHHHHCCCCEEEEECCCCCC T ss_conf 999999742488559996777768 No 26 >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Probab=99.34 E-value=1.3e-11 Score=95.09 Aligned_cols=168 Identities=23% Similarity=0.195 Sum_probs=135.7 Q ss_pred CCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHH Q ss_conf 0246540157-----85211582679999999999999999739925006543326776311563102343433202011 Q T0589 6 KNDKINFSTP-----SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPN 80 (465) Q Consensus 6 ~~~~~~~~~~-----~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~ 80 (465) +-+.+++... ++||.+...|+++-+.+.+++-+...++||.+|.+|.|...++...+|. .+. T Consensus 168 ~l~liDfe~aakiSGsRF~~Lkg~~A~LerALi~f~Ld~~~~~Gy~~v~~P~lV~~~~~~gtGq-------------lp~ 234 (455) T 2dq0_A 168 ILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTS-------------FED 234 (455) T ss_dssp HTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSC-------------TTH T ss_pred HHCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCC-------------CCC T ss_conf 5012027677632577616770136799999999998776523866751421020899855026-------------533 Q ss_pred HHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCC-------CCCCCCCEEEEEEEEEEE Q ss_conf 1221355447888557854776099999999987515-77451577524002667-------777753000000001352 Q T0589 81 RQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDL-TFPFARYQMDVVFRGER-------AKDGRFRQFRQCDIDVVG 152 (465) Q Consensus 81 ~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~-~~~~~~~~~g~~fR~~~-------~~~~r~ref~q~~~~~f~ 152 (465) ..+++|+..+ ..++|-|+.+.+++.++....-.. ..|+|++-++++||.|- .|+.|+.+|.-.+...++ T Consensus 235 f~~~~y~i~~---~~l~Li~TAEvpL~~~~~~eil~~~~LPik~~~~s~cFR~EaGs~G~dtrGl~RvHQF~KVE~~~~~ 311 (455) T 2dq0_A 235 FEDVIYKVED---EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYS 311 (455) T ss_dssp HHHTCCBBTT---SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEE T ss_pred CHHHHHCCCC---CCCEEECCCCCCHHHHHHHHHCCHHHCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEEC T ss_conf 2113210035---6616623433203455556527686689644565899873431368753678877655220002314 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 5752178999999999999997399825999727688 Q T0589 153 REKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 153 ~~~~~~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) .++++...--+++..+.+++..|+++.-++.+...++ T Consensus 312 ~pe~s~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdl 348 (455) T 2dq0_A 312 RPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDL 348 (455) T ss_dssp CTTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGS T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 8861199999999999999997699637998347777 No 27 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=99.29 E-value=5.6e-11 Score=90.81 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=136.4 Q ss_pred CCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 21024654015------785211582679999999999999999739925006543326776311563102343433202 Q T0589 4 MAKNDKINFST------PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPIL 77 (465) Q Consensus 4 ~~~~~~~~~~~------~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~ 77 (465) ..+-+.+++.. =++||.+...++++-+.+.+++.+...++||.+|.+|.|...+++..+|+ T Consensus 180 ge~l~liD~eraaskvsGsrfy~Lkg~~a~Le~ALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtG~------------- 246 (484) T 3lss_A 180 MERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQ------------- 246 (484) T ss_dssp HHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSC------------- T ss_pred HHHCCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCC------------- T ss_conf 7655872234403431368617826971459899999999975406974514854433331376467------------- Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCC-------CCCCCCEEEEEEEE Q ss_conf 0111221355447888557854776099999999987515-774515775240026677-------77753000000001 Q T0589 78 PPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDL-TFPFARYQMDVVFRGERA-------KDGRFRQFRQCDID 149 (465) Q Consensus 78 ~~~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~-~~~~~~~~~g~~fR~~~~-------~~~r~ref~q~~~~ 149 (465) .+...+.+|+..+ ++..++|-|+.+.+++.++....-.. ..|++++-.+++||.|-. |+.|+.+|.-.+.. T Consensus 247 lp~f~~~~y~i~~-~~~~l~Li~TaEvpl~~~~~~e~l~~~~LPlk~~~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE~~ 325 (484) T 3lss_A 247 LSQFDEELYQVSG-DGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQF 325 (484) T ss_dssp HHHHHHTCCEEES-SSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEE T ss_pred CCCCHHHCCCCCC-CCCCCEEEECCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEE T ss_conf 7540432522036-875404630344425666511440254287756212788885444556567753687702258899 Q ss_pred EEECCCHHHH--HHHHHHHHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 3525752178--999999999999997399825999727688 Q T0589 150 VVGREKLSLL--YDAQMPAIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 150 ~f~~~~~~~~--~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) .|+.++.+.. .--+++..+.+++..|+++.-++.+...++ T Consensus 326 ~~~~p~~~~s~~~~e~~~~~~e~i~~~L~lpyrvv~l~tgdl 367 (484) T 3lss_A 326 VVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGAL 367 (484) T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTC T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC T ss_conf 733887410289999999999999986698079974048777 No 28 >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Probab=99.29 E-value=4.9e-11 Score=91.19 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=127.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC-CCCC Q ss_conf 852115826799999999999999997399250065433267763115631023434332020111221355447-8885 Q T0589 16 SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD-TGSE 94 (465) Q Consensus 16 ~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~ 94 (465) +|||.+...|+++-+.+.+++.+.....||.+|.+|.|...+++..+|.. +...+.++...+ ..++ T Consensus 209 srf~~L~g~~A~LerALi~f~ld~~~~~Gy~~v~pP~iV~~~~l~gtGql-------------Pkf~~~~~~~~~~~~~~ 275 (501) T 1wle_A 209 HRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMT-------------PNAKPSQIYNIDPSRFE 275 (501) T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCC-------------SSSSSCSSCBBCTTTSS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHCCHHHHHHHHCC-------------CCCCCCEEEEECCCCCC T ss_conf 02223301678999999999998766524647720131018788664115-------------10242015553044323 Q ss_pred EEEECCCCHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCC------CCCCCCCEEEEEEEEEEECCCHH--HHHHHHHH Q ss_conf 57854776099999999987515-77451577524002667------77775300000000135257521--78999999 Q T0589 95 ARALKFDQTVPLAAYIARHLNDL-TFPFARYQMDVVFRGER------AKDGRFRQFRQCDIDVVGREKLS--LLYDAQMP 165 (465) Q Consensus 95 ~~~Lrpd~t~~~~r~~~~~~~~~-~~~~~~~~~g~~fR~~~------~~~~r~ref~q~~~~~f~~~~~~--~~~~~e~i 165 (465) .++|-|+.+.+++.++....-.. ..|++++..+++||.|- .|+.|+.+|.-.+...++.++.+ ...--+++ T Consensus 276 dl~Li~TAEvpL~~~~~~eil~~~~LPik~~a~s~CFR~Eag~GkdtrGl~RvHQF~KVE~f~~~~p~~e~s~~~~e~~~ 355 (501) T 1wle_A 276 DLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFL 355 (501) T ss_dssp SCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHH T ss_pred CEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 30001212343023556766343102300133111010233578875004555541102025631896455189999999 Q ss_pred HHHHHHHHHCCCCCEEEEECCHHHH Q ss_conf 9999999973998259997276889 Q T0589 166 AIITEIFEAVNIGDFVIRINNRKVL 190 (465) Q Consensus 166 ~~~~e~~~~lgl~~~~~~~~~~~~~ 190 (465) ..+.++++.|+++.-++.+...++. T Consensus 356 ~~~e~i~~~L~LpyRvv~~~sgDlg 380 (501) T 1wle_A 356 SLQMEILTELGLHFRVLDMPTQELG 380 (501) T ss_dssp HHHHHHHHHTTCCEEEEECCGGGST T ss_pred HHHHHHHHHCCCHHHHHHCCCCCCC T ss_conf 8888999861750232321776656 No 29 >1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Probab=99.21 E-value=3e-10 Score=85.92 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=126.6 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCC Q ss_conf 78521158267999999999999999973992500654332677631156310234343320201112213554478885 Q T0589 15 PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSE 94 (465) Q Consensus 15 ~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 94 (465) -++||.+-..++++.+.+.+++-+...+.||.++.+|.+...++....|.. +...+.+|... +. T Consensus 155 Gsrf~~l~g~~A~LerALi~f~ld~~~~~gy~e~~~P~lv~~~~~~gtG~l-------------p~f~~d~y~~~---~~ 218 (421) T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHF-------------PAYRDQVWAIA---ET 218 (421) T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCT-------------TTTGGGSCBBT---TS T ss_pred CCCHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC-------------CCCCCHHHHHH---HH T ss_conf 411100069557751657899998740000002333145567777503788-------------65310234431---13 Q ss_pred EEEECCCCHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCC-------CCCCCCCEEEEEEEEEEECCCHH--HHHHHHH Q ss_conf 578547760999999999875157-7451577524002667-------77775300000000135257521--7899999 Q T0589 95 ARALKFDQTVPLAAYIARHLNDLT-FPFARYQMDVVFRGER-------AKDGRFRQFRQCDIDVVGREKLS--LLYDAQM 164 (465) Q Consensus 95 ~~~Lrpd~t~~~~r~~~~~~~~~~-~~~~~~~~g~~fR~~~-------~~~~r~ref~q~~~~~f~~~~~~--~~~~~e~ 164 (465) .++|.|+.+.+++.++....-+.. .|+++....++||.|- .|+.|+++|.-.+...++...+. .....+. T Consensus 219 ~l~LipTaEv~l~~~~~~~il~~~~LPlr~~~~s~cfR~EaGs~GkdtrGl~RvhQF~kvE~~~~~~~~~e~s~~~~~~~ 298 (421) T 1ses_A 219 DLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQEL 298 (421) T ss_dssp SEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHH T ss_conf 44210246630676641555446535732577447532223344521034433102455777786145430246799999 Q ss_pred HHHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 9999999997399825999727688 Q T0589 165 PAIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 165 i~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) +..+.+++..|+++..++.+...++ T Consensus 299 ~~~~~~i~~~L~lpyrvv~~~~~dl 323 (421) T 1ses_A 299 LENAEEILRLLELPYRLVEVATGDM 323 (421) T ss_dssp HHHHHHHHHHTTCCEEEEECCHHHH T ss_pred HHHHHHHHHHCCCCCHHHHCCCCCC T ss_conf 9999999862267311022275567 No 30 >3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus} PDB: 3e9i_A* Probab=98.67 E-value=4.4e-07 Score=64.62 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=73.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) -.+++..+...+|+.|...||.||+||+|.+.. +|+.+..+ ....+..+..++|+.--.. T Consensus 173 ~~~~Rs~v~~~iR~~l~~~gFlEVeTP~L~~~~----~~~~a~~f----------------~~~~~~~~~~~~L~qSpql 232 (493) T 3e9h_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA----GGAAARPF----------------ITHHNALDMTLYMRIAIEL 232 (493) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSSSCCCC----------------EEEETTTTEEEEECSCSHH T ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEC----CCCCCCCC----------------CCCCCCCCCCCCCCCCHHH T ss_conf 999999999999999997597101598204424----78666643----------------1254468857431479789 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 99999999875157745157752400266777775300000000135257521789999 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) . .+.+-. ...-|+|||+++||+|.....|..||||.++|.-..+..+.....| T Consensus 233 ~-----~q~lmv-~G~~rvfqI~~~FR~E~~~~~h~pEFT~ld~E~af~d~~d~m~~~E 285 (493) T 3e9h_A 233 H-----LKRLIV-GGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTE 285 (493) T ss_dssp H-----HHHHHH-TTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHH T ss_pred H-----HHHHHH-HCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH T ss_conf 9-----999987-1303158850012467678767502210103442687899988999 No 31 >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Probab=98.58 E-value=6.6e-07 Score=63.40 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=73.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++..|...+|+.|...||.||+||+|.+. .+|..+..+. ...+..+..+.|+--. + T Consensus 176 ~~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~----~~g~~a~~f~----------------~~~~~~~~~~yL~qSp--Q 233 (521) T 3bju_A 176 FIIRSKIITYIRSFLDELGFLEIETPMMNII----PGGAVAKPFI----------------TYHNELDMNLYMRIAP--E 233 (521) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSSSCCCCE----------------EEETTTTEEEEECSCS--H T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCEEEE----CCCCCCCCEE----------------ECCCCCCCCEEEECCC--H T ss_conf 9999999999999998789299858730401----4886775112----------------1545679764420493--5 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 9999999875157745157752400266777775300000000135257521789999 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) + +.+.+-. ...-|+|||+++||+|.....|..||||.++|.-..+..+.....| T Consensus 234 l---~~q~l~~-~g~~rVfeI~~~FR~E~~~~~H~pEFt~lE~e~af~d~~d~m~l~E 287 (521) T 3bju_A 234 L---YHKMLVV-GGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITE 287 (521) T ss_dssp H---HHHHHHH-TTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHH T ss_pred H---HHHHHHH-CCCCCEEEEECEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHH T ss_conf 6---6898875-2777479996413178888775875016777653799999999999 No 32 >1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Probab=98.52 E-value=1.4e-06 Score=61.15 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=71.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++..|...+|+.|...||.||+||+|.+.. +|..+..+. ...+..+..+.|+--.... T Consensus 183 ~~~Rs~i~~~iR~fl~~~gF~EV~TPiL~~~~----~g~~a~~F~----------------v~~~~~~~~~yL~~SpQl~ 242 (504) T 1e1o_A 183 FVVRSKILAAIRQFMVARGFMEVETPMMQVIP----GGASARPFI----------------THHNALDLDMYLRIAPELY 242 (504) T ss_dssp HHHHHHHHHHHHHHHHTTTCEECCCCSEESSC----CSSCCCCCE----------------EEETTTTEEEEECSCSHHH T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCCCEEEC----CCCCCCCCE----------------ECCCCCCCCCEECCCHHHH T ss_conf 99999999999999986892897298566367----866676401----------------2577888554103585899 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 9999999875157745157752400266777775300000000135257521789999 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) .-++++ + ..-|.|+|+++||+|.....|..||||.++|.-..+..+.....| T Consensus 243 lq~l~~----~--g~~rVfeI~~~FR~E~~~~rHlpEFt~lE~e~af~d~~d~m~l~E 294 (504) T 1e1o_A 243 LKRLVV----G--GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTE 294 (504) T ss_dssp HHHHHH----H--TCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHH T ss_pred HHHHHH----C--CCCCEEEECCEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999986----0--224417862423368887554763030113233189999999999 No 33 >3g1z_A Putative lysyl-tRNA synthetase; drug target, nucleotide, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: AMP; 1.95A {Salmonella typhimurium} Probab=98.46 E-value=1.1e-06 Score=61.83 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=75.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) -.+++..|...+|+.|.+.||.||.||+|.+... .|.. .++. ........+-.|....|+-= + T Consensus 16 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---~g~~-~~~~-----------~~~~~~~~~~~g~~~yL~~S--p 78 (326) T 3g1z_A 16 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---TDIH-LFPF-----------ETRFVGPGHSQGINLYLMTS--P 78 (326) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---CCTT-CCCC-----------EEEECC---CCCEEEEECSC--S T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEECCCCC---CCCC-CCEE-----------EEEECCCCCCCCCCEEEECC--H T ss_conf 9999999999999999988898977982567899---7635-6503-----------34533654457966686158--8 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999998751577451577524002667777753000000001352575217899999999999999 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFE 173 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~ 173 (465) ++. .+.... ....|+|+++++||+|.....+..||+|.++|....+.. +++.++.+++. T Consensus 79 ql~---lq~~~~-~g~~rVf~i~p~FR~E~~~~~H~~EFt~le~e~~~~~~~------~~m~~~E~li~ 137 (326) T 3g1z_A 79 EYH---MKRLLA-AGCGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMY------RLMNEVDDLLQ 137 (326) T ss_dssp HHH---HHHHHH-HTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHH------HHHHHHHHHHH T ss_pred HHH---HHHHHH-CCCCCEEEECCEECCCCCCCCCCHHHEEHHHHHHCCCHH------HHHHHHHHHHH T ss_conf 999---999865-475531776652247878887662200112566059999------99999999999 No 34 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Probab=98.43 E-value=3.6e-06 Score=58.45 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=73.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCC-CCCCCEEEECCCCH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544-78885578547760 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSG-DTGSEARALKFDQT 103 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~g~~~~Lrpd~t 103 (465) -.+++..|...+|+.|...||.||.||+|.... + + -+.++|... .-.|..++|+-- T Consensus 137 ~~r~Rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-----~-e---------------ga~~~f~~~~~~~~~~~~L~~S-- 193 (585) T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKAT-----P-E---------------GARDYLVPSRVHKGKFYALPQS-- 193 (585) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC-----S-S---------------SSCCCEEECSSSTTCEEECCSC-- T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-----C-C---------------CCCCCEEEEECCCCCHHCCCCC-- T ss_conf 999999999999999987898898787556778-----7-6---------------5667554245487741016778-- Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 999999999875157745157752400266777775300000000135257521789999 Q T0589 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) +++ +.+.+.- ...-|.|++|++||+|.....|.-||+|.+++.-..+........| T Consensus 194 pql---y~q~l~~-~g~~rVfei~p~FR~E~~~t~r~pEFt~le~~~a~~~~~d~m~~~E 249 (585) T 1c0a_A 194 PQL---FKQLLMM-SGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVME 249 (585) T ss_dssp SHH---HHHHHHH-TTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHH T ss_pred CHH---HHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 268---8888875-0666169965421278788754721214556666666667699997 No 35 >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Probab=98.42 E-value=5.2e-06 Score=57.36 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=64.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++..|...+|+.|...||.||+||+|.+.. +++. .+.|. ++..+..+.|+--.... T Consensus 178 ~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~----~eg~-----------------~~~f~-~~~~~~~~yL~~Spel~ 235 (487) T 1eov_A 178 FRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEGG-----------------SSVFE-VTYFKGKAYLAQSPQFN 235 (487) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSSS-----------------SCCCE-EEETTEEEEECSCTHHH T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCC-----------------CCCEE-EEEECCCEEECCCHHHH T ss_conf 99999999999999988899999890304678----8765-----------------57404-55427865430387889 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEEEEC Q ss_conf 99999998751577451577524002667777-7530000000013525 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKD-GRFRQFRQCDIDVVGR 153 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~-~r~ref~q~~~~~f~~ 153 (465) .-++.+ + ..-++|||+++||+|.... .+..||||.++|.-.. T Consensus 236 lk~ll~----~--g~~rvfei~~~FR~E~~~t~rHlpEFt~lE~e~a~~ 278 (487) T 1eov_A 236 KQQLIV----A--DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFE 278 (487) T ss_dssp HHHHHH----T--TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECS T ss_pred HHHHHH----H--CCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHH T ss_conf 999987----4--358727316623057788866661144332656677 No 36 >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} Probab=98.42 E-value=6.6e-06 Score=56.68 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=69.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) -.+++..|...+|+.|...||.||+||+|.... +++.+. .|. +.-.|....|+---. T Consensus 133 ~~r~Rs~i~~~iR~ff~~~gflEVeTP~L~~~~----~~g~a~-----------------~f~-~~~~~~~~~L~~Spe- 189 (429) T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIASA----TEGGAQ-----------------LFP-VIYFGKEAFLAQSPQ- 189 (429) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSTTCC-----------------CCE-EEETTEEEEECSCCH- T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCC----CCCCCC-----------------CCC-CCCCCHHHHHHCCHH- T ss_conf 688899999998875422451343251010224----555444-----------------443-211111333331889- Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEECCCHHH Q ss_conf 9999999987515774515775240026677777-53000000001352575217 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGREKLSL 158 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~~~~~~~ 158 (465) -+.++++.. .-+.|+++++||+|..... +.-||||.++|.-..+..+. T Consensus 190 l~k~l~~~g------~~~vf~i~~~FR~E~~~~~rH~pEFt~lE~y~a~~~~~d~ 238 (429) T 1wyd_A 190 LYKELMAGV------VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDV 238 (429) T ss_dssp HHHHHHHHH------HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHH T ss_pred HHHHHHHHH------CCCEEEEEEEECCCCCCHHHCCCCEECHHHHHHHCCCCHH T ss_conf 999998630------3550798530035430012044311131566643012045 No 37 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Probab=98.31 E-value=8e-06 Score=56.11 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=66.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHH-HHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCH Q ss_conf 7999999999999999973992500654332677-631156310234343320201112213554478885578547760 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEV-LQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQT 103 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~-~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t 103 (465) -.+++..|.+.+|+.|...||.||+||++.+... ....++ ....+.+ -++-.|+...|+--.. T Consensus 14 ~l~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~L~~Spe 77 (294) T 1nnh_A 14 TLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPA---------------GEGMEPA-EVEIYGVKMRLTHSMI 77 (294) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTT---------------CCCCCCC-EEEETTEEEEECSCSH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCC---------------CCCCCCC-CCCCCCCEEEECCCHH T ss_conf 99999999999999999889999837734566787777655---------------6766465-3667897665056989 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC---CCCCCEEEEEEEEEEECCC Q ss_conf 999999999875157745157752400266777---7753000000001352575 Q T0589 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAK---DGRFRQFRQCDIDVVGREK 155 (465) Q Consensus 104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~---~~r~ref~q~~~~~f~~~~ 155 (465) ...-++.+ ...-++|+||++||+|... ..+.-||+|.++|.-..+. T Consensus 78 l~~k~~l~------~g~~~Vf~I~~~FR~E~~~~~~~RH~~EFtmlE~e~~~~~~ 126 (294) T 1nnh_A 78 LHKQLAIA------MGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKM 126 (294) T ss_dssp HHHHHHHH------TTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCH T ss_pred HHHHHHHH------HHCCCCEEECCEECCCCCCCCCCCCCHHHCCCEEEEECCCH T ss_conf 99999987------41146445304453787777877554211275238823469 No 38 >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Probab=98.29 E-value=1.1e-05 Score=55.30 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=67.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) -.+++..|...+|+.|...||.||+||+|.+.. .++.+ ..+. ....+..+.|+.--. T Consensus 134 ~l~~Rs~ii~~iR~f~~~~gFlEVeTP~L~~~~----~~~~a-----------------~~f~-~~~~~~~~~L~~spe- 190 (434) T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTGA----VEGGA-----------------TLFK-LKYFDKYAYLSQSAQ- 190 (434) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC----SSCGG-----------------GCCE-EEETTEEEEECSCSH- T ss_pred HHHHHHHHHHHHHHHHHCCCHHEECCCCEEECC----CCCCC-----------------CCCC-CCHHHHHHHHCCCCH- T ss_conf 222268899999976522112000233023204----55432-----------------1011-100035554125510- Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEEEECCCHHH Q ss_conf 99999999875157745157752400266777-7753000000001352575217 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSL 158 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~-~~r~ref~q~~~~~f~~~~~~~ 158 (465) ...+..+. . .-|.|+||++||+|... ..+.-||||.++|.-..+-.+. T Consensus 191 l~~k~li~---G---~~rvfei~~~FR~E~~~~~rH~~EFt~lE~y~a~~d~~d~ 239 (434) T 1x54_A 191 LYLEAAIF---G---LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDI 239 (434) T ss_dssp HHHHHHHH---H---HSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHH T ss_pred HHHHCCCC---C---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 21000001---1---3246533321223556675157722034322455676450 No 39 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Probab=98.29 E-value=1.1e-05 Score=55.13 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=72.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCC-CCCCCCCEEEECCCCHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355-44788855785477609 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDK-SGDTGSEARALKFDQTV 104 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~~~~Lrpd~t~ 104 (465) .+++..|...+|+.|...||.||.||+|...+ .|+- .+.+. ..+..|..++|+--- T Consensus 144 ~r~Rs~i~~a~r~f~~~~gF~eV~TPiLt~~~----~eGa-----------------~~f~~~~~~~~~~~~~L~~Sp-- 200 (580) T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKST----PEGA-----------------RDFLVPYRHEPGLFYALPQSP-- 200 (580) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC----SSSS-----------------CCCEEECTTSTTEEEECCSCS-- T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHHCCCCC----CCCC-----------------CCCEECCCCCCCCCCCCCCCC-- T ss_conf 99999999999999987794797320103578----7425-----------------685246235888452356584-- Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 99999999875157745157752400266777775300000000135257521789999 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) +. +.+.+.. ...-|.|++|++||+|.....|..||+|.++|.-..+........| T Consensus 201 ql---~~q~l~~-~g~~rVfeig~~FR~E~~~t~r~~EFt~le~e~a~~~~~~~~~~~e 255 (580) T 1l0w_A 201 QL---FKQMLMV-AGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNE 255 (580) T ss_dssp HH---HHHHHHH-TTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHH T ss_pred HH---HHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHH T ss_conf 79---8889987-0556358853433479999887852102245541255888876568 No 40 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Probab=98.27 E-value=1.4e-05 Score=54.57 Aligned_cols=100 Identities=17% Similarity=0.094 Sum_probs=63.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++..|...+|+.|...||.||+||+|.... +++.. + .|. ++.-+....|+- .++ T Consensus 244 ~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~----~Eg~~-~----------------~f~-~~~~~~~~yL~q--SPq 299 (548) T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCS----SEGGS-N----------------IFE-VKYFDRKAYLAQ--SPQ 299 (548) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC-----------------------------------------CCBCS--CTH T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCEEEECC----CCCCC-C----------------CCC-CCCCCHHHHHHH--HHH T ss_conf 99999999999999987897898798575427----77655-7----------------201-221004667642--346 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEEEEC Q ss_conf 9999999875157745157752400266777-77530000000013525 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGR 153 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~-~~r~ref~q~~~~~f~~ 153 (465) + +.+.+-. ...-++|||+++||+|... ..+..||||.++|.-.. T Consensus 300 l---~~k~ll~-~g~~rvfqI~~~FR~E~~~t~rHlpEFt~LE~e~~~~ 344 (548) T 3i7f_A 300 L---YKQMAIM-GDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIV 344 (548) T ss_dssp H---HHHHHHT-TTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECS T ss_pred H---HHHHHHH-CCCCCCCCCCCHHCCCCCCCCCCCCCEEEEHHHHHHH T ss_conf 7---7666543-2554323314210055344456775121201007899 No 41 >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Probab=98.23 E-value=4.5e-05 Score=51.06 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=97.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH----------------HHHHCCCCCH Q ss_conf 210246540157852115826799999999999999997399250065433267----------------7631156310 Q T0589 4 MAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLE----------------VLQAKGNQGD 67 (465) Q Consensus 4 ~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~----------------~~~~sg~~~~ 67 (465) +.++..++...|.-.+-.+ ...-...+.+.++++|.+.||+|++.|.|+... +|...+|=.. T Consensus 26 ~l~~~~id~~~P~~~~~~G--~~HPl~~~IeeIr~if~~MGF~E~~GP~Ie~E~~i~~qf~~~a~~NfDaLf~p~~HP~~ 103 (534) T 2du3_A 26 ILAERSPNELYPRVGFSFG--KEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKP 103 (534) T ss_dssp GSCCCCGGGSTTSSCCCCC--CCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHHHHTTSCEEEECCCC T ss_pred HCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC T ss_conf 2124656555889998888--71869999999999999789879357832123000012241245656665075338986 Q ss_pred H------HHHHHHHCC-----HHHHHHHC--------------------------------------CCCCCCCCCEEEE Q ss_conf 2------343433202-----01112213--------------------------------------5544788855785 Q T0589 68 N------IIYGLEPIL-----PPNRQAEK--------------------------------------DKSGDTGSEARAL 98 (465) Q Consensus 68 ~------~~~~~~~~~-----~~~~~~~~--------------------------------------~~~~d~~g~~~~L 98 (465) + .+..+.+.. .....+-. |+-...-...+.| T Consensus 104 ~~~~~~~~~~~i~~~~~~~~~ARdmqDTF~~~kkg~~dgddl~~~i~~~~~~~~~~~~~~~~~~f~e~~~~~~~s~~~lL 183 (534) T 2du3_A 104 NVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTL 183 (534) T ss_dssp CTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCTTTTTCCCEEEEEEE T ss_pred CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEE T ss_conf 64432011211023334564246655432004656567531023333320135444434446556432334320122313 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-CCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 477609999999998751577451577524002667-7777530000000013525752178999999999999997399 Q T0589 99 KFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGER-AKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNI 177 (465) Q Consensus 99 rpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~-~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lgl 177 (465) |.-+|+..++.......+.+.|+|++++|+|||++. ....+..+|+|.+.-.++..- .. ..+..+....+..++. T Consensus 184 RTHTS~~q~r~Lr~l~~~~~~Piri~s~GrVYRrD~aiDaTH~p~FhQvEGlvVd~~v--t~--~dLKg~L~~fl~~~f~ 259 (534) T 2du3_A 184 RSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEEL--SV--DDGKAVAEALLRQFGF 259 (534) T ss_dssp CSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSC--CH--HHHHHHHHHHHGGGTC T ss_pred ECCCCCCHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCEEEEEEEEEECCCC--CH--HHHHHHHHHHHHHHCC T ss_conf 2156642299999997178998589604501103565665425556672269857999--89--9999999999999779 Q ss_pred CCEEEE Q ss_conf 825999 Q T0589 178 GDFVIR 183 (465) Q Consensus 178 ~~~~~~ 183 (465) ....++ T Consensus 260 ~~~~~R 265 (534) T 2du3_A 260 ENFRFR 265 (534) T ss_dssp CEEEEE T ss_pred CCCEEE T ss_conf 875798 No 42 >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Probab=98.18 E-value=3.3e-05 Score=51.95 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=67.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++.+|...+|+.|...||.||+||+|.+...- |. .+.+ ..+..+....|+-- ++ T Consensus 156 l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~e---g~------------------~~~f-~~~~~~~~~~L~~S--pq 211 (456) T 3m4p_A 156 LQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE---GG------------------STLF-KLQYFNEPAYLTQS--SQ 211 (456) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------------------------CCCC-EEEETTEEEEECSC--CH T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCC---CH------------------HHCC-CCCCCHHHHHHCCC--HH T ss_conf 9999999999986330488267249744055663---31------------------2225-33220022430297--87 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEECCCHHHHHH Q ss_conf 999999987515774515775240026677777-53000000001352575217899 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGREKLSLLYD 161 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~~~~~~~~~~ 161 (465) + +.+.+.. ...+.||++++||+|..... +..||+|.++|.-..+....... T Consensus 212 l---~kq~~~~--g~~rvf~i~~~fR~E~~~~~rH~pEFt~lE~e~a~~~~~~~m~~ 263 (456) T 3m4p_A 212 L---YLESVIA--SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNH 263 (456) T ss_dssp H---HHHTTHH--HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHH T ss_pred H---HHHHHHH--CCCCEEEECCCEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 7---5233242--25641552351204664210134320001255556778879999 No 43 >1b8a_A Protein (aspartyl-tRNA synthetase); tRNA ligase,; HET: ATP; 1.90A {Thermococcus kodakarensis KOD1} SCOP: b.40.4.1 d.104.1.1 Probab=98.15 E-value=2.8e-05 Score=52.46 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=65.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++.+|...+|+.|...||.||+||+|.... .++ +.+.| ..+..+..+.|+- .++ T Consensus 137 ~~~Rs~i~~~iR~fl~~~~F~EVeTPiL~~~~----~eg-----------------~a~~f-~~~~~~~~~~L~~--Spe 192 (438) T 1b8a_A 137 FKIRSSVFKAVRDFFHENGFIEIHTPKIIATA----TEG-----------------GTELF-PMKYFEEDAFLAE--SPQ 192 (438) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESCC----CSS-----------------SSSCC-EEEETTEEEEECS--CSH T ss_pred EEHHHHHHHHHHHHHHHCCCEEEECCHHEECC----CCC-----------------CCCCC-CCCCCCCCHHHCC--CHH T ss_conf 31258899889998861596899771111124----666-----------------55466-6544676402206--977 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEECC Q ss_conf 999999987515774515775240026677777-5300000000135257 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGRE 154 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~~~ 154 (465) + +.+.+-. ...-|+|||+++||+|..... ++-||+|.+.+..... T Consensus 193 l---~lk~l~~-~G~~kvfeI~~~FR~E~~~~~rh~~ef~~~~~~~~~~~ 238 (438) T 1b8a_A 193 L---YKEIMMA-SGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE 238 (438) T ss_dssp H---HHHHGGG-TTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCS T ss_pred H---HHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHH T ss_conf 8---6433312-45562699813566566765500200663368999875 No 44 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Probab=98.14 E-value=5.1e-05 Score=50.68 Aligned_cols=171 Identities=15% Similarity=0.198 Sum_probs=97.1 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH----------------HHHHCCCCCHH Q ss_conf 10246540157852115826799999999999999997399250065433267----------------76311563102 Q T0589 5 AKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLE----------------VLQAKGNQGDN 68 (465) Q Consensus 5 ~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~----------------~~~~sg~~~~~ 68 (465) .|...++...|+-.+..| ...-...+.+.++++|.+.||+|+..|.++..- +|--.+|=.-| T Consensus 37 lk~~~id~t~P~~~~~~G--k~HPl~~~ie~Ir~if~~mGFeE~~gp~Ie~e~~~f~~F~P~~h~NFDaLf~P~dHPaRD 114 (549) T 2du7_A 37 IKDKHIDNKYPRLKPVYG--KPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPD 114 (549) T ss_dssp SCCCTTTTSSSSSCCCCC--CCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCC T ss_pred HCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC T ss_conf 214666334888899888--748699999999999997898892188477423022223755445557448998898887 Q ss_pred ---HHHHH---HH--CCHHH----HHHHC---------------------------------------CCCCCCCCCEEE Q ss_conf ---34343---32--02011----12213---------------------------------------554478885578 Q T0589 69 ---IIYGL---EP--ILPPN----RQAEK---------------------------------------DKSGDTGSEARA 97 (465) Q Consensus 69 ---~~~~~---~~--~~~~~----~~~~~---------------------------------------~~~~d~~g~~~~ 97 (465) .-... .. ..... .-+.. ++-.......+. T Consensus 115 ~~ds~~~~~~i~~~~~~~~~~~~e~l~~v~~~~k~g~~~gdd~~~e~~~al~~~~~~g~r~~~~~f~~~~~~~~ea~rll 194 (549) T 2du7_A 115 VGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLT 194 (549) T ss_dssp CSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEE T ss_pred CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCE T ss_conf 66541100003553345663058899999876104665776422000001234443344333344432233444201102 Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-CCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 5477609999999998751577451577524002667-777753000000001352575217899999999999999739 Q T0589 98 LKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGER-AKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVN 176 (465) Q Consensus 98 Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~-~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lg 176 (465) ||.-+|+..++.........+.|+|++++|++||++. ....+..+|.|.+.-+++.... . ..+..+....+..++ T Consensus 195 LRTHTTs~q~rtL~~l~ek~~pPirifSiGRVyRrD~i~DaTH~~~FHQiEGlvvd~~vt--~--~dLK~~L~~f~~~lf 270 (549) T 2du7_A 195 LRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVS--V--DDGKVVAEGLLAQFG 270 (549) T ss_dssp CCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCC--H--HHHHHHHHHHHGGGT T ss_pred EECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHCCCCHHHCEEEECCCCC--H--HHHHHHHHHHHHHHC T ss_conf 203688168999998864479982675565434566554133065312100177407878--9--999999999999977 Q ss_pred CCCEE Q ss_conf 98259 Q T0589 177 IGDFV 181 (465) Q Consensus 177 l~~~~ 181 (465) ..... T Consensus 271 ~~~~k 275 (549) T 2du7_A 271 FTKFK 275 (549) T ss_dssp CCCCC T ss_pred CCCCE T ss_conf 88837 No 45 >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix bundle, acetylation; HET: PHE; 3.30A {Homo sapiens} Probab=98.13 E-value=0.0002 Score=46.65 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECC-CCCCCH-----HHHHHCCCCC-----HHHHH--------------HHHHCCHHH Q ss_conf 9999999999999999739925006-543326-----7763115631-----02343--------------433202011 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIET-PAVERL-----EVLQAKGNQG-----DNIIY--------------GLEPILPPN 80 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~-P~i~~~-----~~~~~sg~~~-----~~~~~--------------~~~~~~~~~ 80 (465) ..-...+.+.++++|...||.|+.+ |.++.. .+|....|-+ +..+- .+...|... T Consensus 224 ~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~f~NFDaL~~PqdHPARd~~DTfyl~~~~~~~~~~~d~~~~v~~~H~~g 303 (508) T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508) T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 58599999999999986798771589805542135575568867998980212760585313346288998887765137 Q ss_pred HHHHC---CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC Q ss_conf 12213---554478885578547760999999999875157-745157752400266777775300000000135257 Q T0589 81 RQAEK---DKSGDTGSEARALKFDQTVPLAAYIARHLNDLT-FPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGRE 154 (465) Q Consensus 81 ~~~~~---~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~-~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~ 154 (465) ..... +...-.......||.-.|+..+|...+.....+ .|.+++++|+|||++.-...+..+|+|.+.-+.+.. T Consensus 304 ~~~s~g~~~~w~~~~a~~~vLRTHTTa~~~r~L~~~~~~~~~~P~k~fsigrVfR~e~iDatHl~eFhQ~EG~v~d~~ 381 (508) T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHG 381 (508) T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEES T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCEECCCCCCCCCCCCEEEEEEEEEECC T ss_conf 766555444443002432664478982899999987514899981694778664889876641661157678998668 No 46 >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 Probab=98.07 E-value=1.9e-05 Score=53.61 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=61.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEC--CCC Q ss_conf 799999999999999997399250065433267763115631023434332020111221355447888557854--776 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALK--FDQ 102 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lr--pd~ 102 (465) -.+++..|...+|+.|...||.||+||++.+.. .++. ...+ ..+..+....|+ |++ T Consensus 124 ~l~~Rs~i~~~iR~ff~~~gflEVeTP~l~~~~------~~~~---------------~~~~-~~~~~~~~~~L~~Spel 181 (422) T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG------AEGG---------------SGLF-GVDYFEKRAYLAQSPQL 181 (422) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC--------------------------------------------------CHH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC------CCCC---------------CCCC-CCCCCCCHHHHHHHHHH T ss_conf 999999999999765763897864397444555------7777---------------7757-87732202576651999 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEE Q ss_conf 099999999987515774515775240026677777-5300000000135 Q T0589 103 TVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVV 151 (465) Q Consensus 103 t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f 151 (465) ..+.++. ...|+||++++||+|..... +.-||+|.++|.- T Consensus 182 ---~Krll~~------g~~kvfei~~~FR~E~~~~~rh~~EFt~le~e~a 222 (422) T 1n9w_A 182 ---YKQIMVG------VFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMG 222 (422) T ss_dssp ---HHHHHHH------HHSEEEEEEEC-------------CCEEEEEEEE T ss_pred ---HHHHHHC------CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH T ss_conf ---9875302------4354178741005454666456860364787887 No 47 >1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Probab=98.00 E-value=0.0001 Score=48.66 Aligned_cols=96 Identities=16% Similarity=0.255 Sum_probs=79.5 Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC- Q ss_conf 56870289984687899999999999987698599972--898977899999965897999986023438828999858- Q T0589 368 PPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNF--EKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ- 444 (465) Q Consensus 368 ~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~--~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~- 444 (465) .-.|.+.-|+...+++.+||..|-..|++.|+.|++-+ ++-++++.....-..|.||+|+|-++..+-+++||.-+- T Consensus 5 ~s~p~DCeIivvnk~~~~YAe~Ie~rL~~~gl~vd~lf~n~dv~l~~aL~~vs~~G~~faIlVt~qn~~~~S~TvnIL~g 84 (130) T 1v95_A 5 SSGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFG 84 (130) T ss_dssp CCCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSS T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCEEEEECCC T ss_conf 88995549999877544378999999987597788983587454999999887579836999812405445467520017 Q ss_pred -CCCEEEECHHHHHHHHHHH Q ss_conf -8865871489999999996 Q T0589 445 -SGEQVEVALADLAEEIKRR 463 (465) Q Consensus 445 -t~~q~~v~~~el~~~l~~~ 463 (465) -.+...+|++|.+..+.+- T Consensus 85 ~pqEHRNMPleDAl~lia~~ 104 (130) T 1v95_A 85 TPQEHRNMPQADAMVLVARN 104 (130) T ss_dssp SCCEEEEEEHHHHHHHHHHH T ss_pred CHHHHHCCCHHHHHHHHHHH T ss_conf 81888788788999999999 No 48 >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* Probab=97.96 E-value=0.0003 Score=45.49 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=83.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH-HHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC-----------CCC Q ss_conf 99999999999999997399250065433267-763115631023434332020111221355447-----------888 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLE-VLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD-----------TGS 93 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~-~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------~~g 93 (465) .--...+.+.++++|.+.||+.++.|-|+..- .|.+ -....-|..-.-...|.+.+ ... T Consensus 100 ~HPItqvi~eI~~IF~~mGF~v~~GpeIE~d~~NFda---------Ln~P~dHPARd~~DTFyl~~~~~~~~~~~~~~~~ 170 (350) T 1b7y_A 100 LHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDA---------LNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVE 170 (350) T ss_dssp CCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTT---------TTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCC T ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH---------HCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHCC T ss_conf 4868999999999997469445048854466666787---------6799744011556538961554344687420000 Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 55785477609999999998751577451577524002667777753000000001352575217899999999999999 Q T0589 94 EARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFE 173 (465) Q Consensus 94 ~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~ 173 (465) ..+.||.-.|+.-+|.. .+...|+++++.|+|||++.....+..+|+|.+.-+++.... . +.+..+..+.+. T Consensus 171 ~~~lLRTHTS~~q~r~m----~~~~pp~r~i~~G~VyR~d~~D~tH~p~FhQ~Eg~~vd~~~~--~--~~Lk~~l~~~~~ 242 (350) T 1b7y_A 171 GRLLLRTHTSPMQVRYM----VAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIA--M--AHLKGAIYELAQ 242 (350) T ss_dssp SCEEECSSSTHHHHHHH----HHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCC--H--HHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHH----HCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--H--HHHHHHHHHHHH T ss_conf 03142556768889987----556998369846765478998875587666889999311022--7--989999999998 Q ss_pred HCCCCC Q ss_conf 739982 Q T0589 174 AVNIGD 179 (465) Q Consensus 174 ~lgl~~ 179 (465) .+..+. T Consensus 243 ~~fg~~ 248 (350) T 1b7y_A 243 ALFGPD 248 (350) T ss_dssp HHSCSS T ss_pred HHCCCC T ss_conf 742888 No 49 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.81 E-value=0.0012 Score=41.39 Aligned_cols=87 Identities=16% Similarity=0.275 Sum_probs=61.6 Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 8557854776099999999987515774515775240026677-777530000000013525752178999999999999 Q T0589 93 SEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERA-KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEI 171 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~-~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~ 171 (465) .+...||+-++++....+..+.+....+.|+|.+|++||++.. ...+..+|.|.+.-+.+... -. +++...+..+ T Consensus 197 sd~SvLRThl~pgll~~l~~N~~r~~~~lRlFEiGrVFr~D~~~D~tHl~~fhQleGl~~g~~v--df--~DLKg~Le~l 272 (665) T 2odr_A 197 SSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGV--DI--NDGKAIAEGL 272 (665) T ss_dssp CCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTC--CH--HHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCC--CH--HHHHHHHHHH T ss_conf 3331106577556999999998589998389997767716860115346511457899987850--79--9999999999 Q ss_pred HHHCCCCCEEEE Q ss_conf 997399825999 Q T0589 172 FEAVNIGDFVIR 183 (465) Q Consensus 172 ~~~lgl~~~~~~ 183 (465) +..++.....++ T Consensus 273 l~~lg~~~vk~r 284 (665) T 2odr_A 273 LSQFGFTNFKFI 284 (665) T ss_dssp HHTTTCCCEEEE T ss_pred HHHHCCCCEEEE T ss_conf 999778763999 No 50 >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Probab=97.76 E-value=0.001 Score=41.92 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=83.1 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH-HHHHCCCCCHHHHHHHHHCCHHHHHHHC Q ss_conf 246540157852115826799999999999999997399250065433267-7631156310234343320201112213 Q T0589 7 NDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLE-VLQAKGNQGDNIIYGLEPILPPNRQAEK 85 (465) Q Consensus 7 ~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~-~~~~sg~~~~~~~~~~~~~~~~~~~~~~ 85 (465) ++.+++..| |-. ..+-..--...+++.++++|.+.||.+++.|.|+... .|.+-. +..-|..-..... T Consensus 35 ~e~iDvtlP-~~~-~~~G~~HPl~~~~~~i~~if~~mGF~~~~gpeIe~~~~NFDaLn---------~P~dHPARd~~DT 103 (294) T 2rhq_A 35 EETIDVTLP-SRQ-ISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALN---------LPKSHPARDMQDS 103 (294) T ss_dssp TTCCCTTSC-CCC-CCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGT---------CCTTCGGGCTTTS T ss_pred HCCCCCCCC-CCC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCEECCCHHHHHHHC---------CCCCCCCCCCCCC T ss_conf 545423078-888-78998384999999999999877982426884045145676448---------8998723152451 Q ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCC Q ss_conf 5544788855785477609999999998751577451577524002667777753000000001352575 Q T0589 86 DKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREK 155 (465) Q Consensus 86 ~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~ 155 (465) |.+. ..+.||.-.++..++...+. ..+.|.++++.|+|||++.-...+..+|.|.+.-.++... T Consensus 104 fyi~----~~~lLRtHTS~~q~r~l~~~--~~~~p~r~~~~G~VyRrD~iDatH~p~FhQ~EG~~v~~~~ 167 (294) T 2rhq_A 104 FYIT----DEILMRTHTSPVQARTMEKR--NGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNI 167 (294) T ss_dssp CBSS----SSEEECSSSHHHHHHHHHHT--TTCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSC T ss_pred EEEC----CCCCCCCCCCHHHHHHHHHH--CCCCCEEEEECCCEEECCCCCHHHCCEEEEEEEEEECCCC T ss_conf 8743----67545676825459999861--4689818985684670688873432223340259981787 No 51 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.62 E-value=0.00069 Score=43.05 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=63.2 Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 557854776099999999987515774515775240026677-7775300000000135257521789999999999999 Q T0589 94 EARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERA-KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIF 172 (465) Q Consensus 94 ~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~-~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~ 172 (465) +...||+.++++....+..+.+....+.|+|.+|++||++.. ...+..+|.|.+.-+.+..- -. +++...+..++ T Consensus 198 d~sVLRTSLlpGLL~tl~~N~~rq~~pIRlFEIGRVFR~D~~eD~tHl~efhQleGlv~g~~v--df--~DLKgvLE~lL 273 (701) T 2odr_C 198 SKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGV--DI--NDGKAIAEGLL 273 (701) T ss_dssp EEEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTC--CH--HHHHHHHHHHH T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCC--CH--HHHHHHHHHHH T ss_conf 120106476689999999998489998799998647836875556547513799999995786--88--99999999999 Q ss_pred HHCCCCCEEEEE Q ss_conf 973998259997 Q T0589 173 EAVNIGDFVIRI 184 (465) Q Consensus 173 ~~lgl~~~~~~~ 184 (465) ..|+.....++. T Consensus 274 ~~Lg~~~vk~r~ 285 (701) T 2odr_C 274 SQFGFTNFKFIP 285 (701) T ss_dssp HTTTCCCEEEEE T ss_pred HHHCCCCEEEEE T ss_conf 996788649997 No 52 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.51 E-value=0.0015 Score=40.81 Aligned_cols=88 Identities=16% Similarity=0.262 Sum_probs=62.2 Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 8557854776099999999987515774515775240026677-777530000000013525752178999999999999 Q T0589 93 SEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERA-KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEI 171 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~-~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~ 171 (465) .+...||+-++++..+.+..+.+....|.|+|.+|++||++.. -..+..+|.|.+.-+.+..- -. +++...+..+ T Consensus 197 sd~svLRThts~gll~~l~~n~~r~~~plrlFEiGrVFR~D~i~D~tH~~~fhQleGlvvd~~v--~f--~DLKg~le~l 272 (648) T 2odr_B 197 SSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGV--DI--NDGKAIAEGL 272 (648) T ss_dssp CCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTC--CH--HHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCC--CH--HHHHHHHHHH T ss_conf 0000116376056999999998589998599974227878874435447620478999982576--89--9999999999 Q ss_pred HHHCCCCCEEEEE Q ss_conf 9973998259997 Q T0589 172 FEAVNIGDFVIRI 184 (465) Q Consensus 172 ~~~lgl~~~~~~~ 184 (465) +..++......+. T Consensus 273 L~~lg~~~vk~r~ 285 (648) T 2odr_B 273 LSQFGFTNFKFIP 285 (648) T ss_dssp HHTTTCCCEEEEE T ss_pred HHHHCCCCEEEEE T ss_conf 9997787639996 No 53 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=97.51 E-value=0.0015 Score=40.74 Aligned_cols=88 Identities=16% Similarity=0.262 Sum_probs=63.7 Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 8557854776099999999987515774515775240026677-777530000000013525752178999999999999 Q T0589 93 SEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERA-KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEI 171 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~-~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~ 171 (465) .+..+||+.++++....+..+.+....+.|+|.+|++||++.. ...+..+|.|.+.-+.+..- -. +.+...+..+ T Consensus 197 Sd~sVLRTSLlpGLL~tL~~N~~Rq~~pIRLFEIGrVFR~D~ieD~tHl~efhQleGli~g~~V--df--~dLKgvlE~l 272 (685) T 2odr_D 197 SSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGV--DI--NDGKAIAEGL 272 (685) T ss_dssp CCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTC--CH--HHHHHHHHHH T ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC--CH--HHHHHHHHHH T ss_conf 2010116466343999999998389998599997777746775546536511688899995788--99--9999999999 Q ss_pred HHHCCCCCEEEEE Q ss_conf 9973998259997 Q T0589 172 FEAVNIGDFVIRI 184 (465) Q Consensus 172 ~~~lgl~~~~~~~ 184 (465) +..|+.....++. T Consensus 273 L~~Lg~~~vk~r~ 285 (685) T 2odr_D 273 LSQFGFTNFKFIP 285 (685) T ss_dssp HHTTTCCCEEEEE T ss_pred HHHHCCCCEEEEE T ss_conf 9986788729997 No 54 >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis} Probab=97.51 E-value=0.0038 Score=38.07 Aligned_cols=111 Identities=9% Similarity=0.067 Sum_probs=74.9 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC-CCCCEEEECCCCHHHHH Q ss_conf 99999999999997399250065433267763115631023434332020111221355447-88855785477609999 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD-TGSEARALKFDQTVPLA 107 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~~~~Lrpd~t~~~~ 107 (465) ..++++.+|+.+...||+||.|=.+...+.+++.+... .+...++.. .+.+.=.||+.+.+++. T Consensus 6 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---------------~~~~i~l~NPis~d~~~lR~sLlpgLL 70 (213) T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHP---------------REMAVELMNPLSQELNCMRQTLLFGGL 70 (213) T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSC---------------GGGCCBCSSBSCSSEEEECSSSHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCC---------------CCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 68999999999997895310127778989998742787---------------567389649854658999987687799 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCC------CCCCCEEEEEEEEEEECC Q ss_conf 99999875157745157752400266777------775300000000135257 Q T0589 108 AYIARHLNDLTFPFARYQMDVVFRGERAK------DGRFRQFRQCDIDVVGRE 154 (465) Q Consensus 108 r~~~~~~~~~~~~~~~~~~g~~fR~~~~~------~~r~ref~q~~~~~f~~~ 154 (465) ..+..+.+....++++|.+|++|+..... .....|....++-+.+.. T Consensus 71 ~~~~~N~~~~~~~~~lFEiG~vf~~~~~~~~~~~~~~~~~e~~~l~~~~~g~~ 123 (213) T 3ica_A 71 ETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQR 123 (213) T ss_dssp HHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBC T ss_pred HHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHEEEEEEECCC T ss_conf 99875565347664589730166157776543210000202407999998887 No 55 >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 2.09A {Bacteroides fragilis} Probab=97.29 E-value=0.0041 Score=37.85 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=70.7 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC-CCCEEEECCCCHHHHH Q ss_conf 999999999999973992500654332677631156310234343320201112213554478-8855785477609999 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT-GSEARALKFDQTVPLA 107 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~~~~Lrpd~t~~~~ 107 (465) .+++++.+|+.+...||.|+.|=.+...+.++.-+... .+...++..+ +.+.=+||+.+.+++. T Consensus 6 ~~~l~~~lr~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---------------~~~~v~l~NPls~e~~~lR~sLlp~LL 70 (213) T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP---------------SKNLVMLLNPLSADLNCMRQTLLFGGL 70 (213) T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC---------------GGGCEEBSSGGGCSCCEECSCSHHHHH T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCC---------------CCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 89999999999997896001047668989998742687---------------667289638875557887887799899 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCC------CCCCEEEEEEEEEEE Q ss_conf 999998751577451577524002667777------753000000001352 Q T0589 108 AYIARHLNDLTFPFARYQMDVVFRGERAKD------GRFRQFRQCDIDVVG 152 (465) Q Consensus 108 r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~------~r~ref~q~~~~~f~ 152 (465) ..+..+.+.....+++|.+|++|+...... ....|....++-.-+ T Consensus 71 ~~~~~N~~~~~~~~~lFEiG~vy~~~~~~~~~~~~~~~~~e~~~l~~~~~G 121 (213) T 3ig2_A 71 ESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTG 121 (213) T ss_dssp HHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEE T ss_pred HHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 999872257767602798764773676556643344664321689999745 No 56 >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Probab=95.01 E-value=0.15 Score=27.29 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=47.0 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC-CCCCEEEECCCCHHHHH Q ss_conf 99999999999997399250065433267763115631023434332020111221355447-88855785477609999 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD-TGSEARALKFDQTVPLA 107 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~~~~Lrpd~t~~~~ 107 (465) +++..+.+|+.+...||+|+.|-.|...+.+..-+.. .....++.. .+.+.=+||+.+.+++. T Consensus 495 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~----------------~~~~v~l~NPis~e~s~lR~sLlp~LL 558 (795) T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQ----------------ERPTISLLMPMSEAHATLRQSLLPHLI 558 (795) T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSS----------------CCCCEECSSCSCTTSSEECSCSHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC----------------CCCHHHHCCCHHHHHHHHHCCCHHHHH T ss_conf 8988999999998659864346556574562121123----------------453455357313435665065337789 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCC Q ss_conf 99999875157745157752400266 Q T0589 108 AYIARHLNDLTFPFARYQMDVVFRGE 133 (465) Q Consensus 108 r~~~~~~~~~~~~~~~~~~g~~fR~~ 133 (465) ..+..+.+....+.++|.+|++|... T Consensus 559 ~~~~~N~~r~~~~~~lFEiG~v~~~~ 584 (795) T 2rhq_B 559 EATAYNVARKNKDVRLYEIGRVFFGN 584 (795) T ss_dssp HHHHHHHHTTCCCEEEEEEEEEEECC T ss_pred HHHHHHHHCCCCCCCEECCCEEEECC T ss_conf 99998861689885600254389547 No 57 >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 2iy5_B* Probab=94.36 E-value=0.15 Score=27.24 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=49.4 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCC Q ss_conf 65401578521158267999999999999999973992500654332677631156310234343320201112213554 Q T0589 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKS 88 (465) Q Consensus 9 ~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (465) ++....|.......+.......+.++.+|+.+...||+|+.|=.|...+....-+.. ...... T Consensus 471 nIp~~~p~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~~~~~~~-----------------~~~v~l 533 (785) T 1b7y_B 471 TIPLALPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLD-----------------PPRLLL 533 (785) T ss_dssp GSCCCCCCCCCCGGGSSTTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCC-----------------CCSCEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCC-----------------CCCEEE T ss_conf 466667654455544565443699999999998689845614776787896553035-----------------421575 Q ss_pred C-CCCCCEEEECCCCHHHHHHHHHHHHHH-CCCCCCEEEECCCCCC Q ss_conf 4-788855785477609999999998751-5774515775240026 Q T0589 89 G-DTGSEARALKFDQTVPLAAYIARHLND-LTFPFARYQMDVVFRG 132 (465) Q Consensus 89 ~-d~~g~~~~Lrpd~t~~~~r~~~~~~~~-~~~~~~~~~~g~~fR~ 132 (465) . -.+.+.=.||+.+.++....+..+.+. .+...++|.+|++|+. T Consensus 534 ~NPls~e~s~lR~sLlp~LL~~~~~N~~r~~~~~~~lFEiG~vf~~ 579 (785) T 1b7y_B 534 LNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRE 579 (785) T ss_dssp SSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEESS T ss_pred CCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCEECCCCEECC T ss_conf 3897533124440041359999998886078753305113533145 No 58 >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* Probab=93.79 E-value=0.28 Score=25.52 Aligned_cols=112 Identities=10% Similarity=0.058 Sum_probs=58.7 Q ss_pred HHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHH-HHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH Q ss_conf 9999999999973992500654332677631156310234-343320201112213554478885578547760999999 Q T0589 31 YLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNII-YGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAY 109 (465) Q Consensus 31 ~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~ 109 (465) .+.+.+++.|...|+.|+.+|.+...+-+..=-.....+. -....-|..-.....|.. .....||+-+++...+. T Consensus 52 ~~~~~I~~~f~~~g~~e~~~~~f~~~~~~~~v~~~~~NfD~L~~P~dhp~R~~~dt~yi----~~~~~LRth~s~~~~~~ 127 (415) T 3cmq_A 52 LIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL----NRTHMLRAHTSAHQWDL 127 (415) T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS----SSSEEECSSGGGGHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHH T ss_conf 99999999998658631158664333546853442216465569976721012222111----66521157897899999 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 9998751577451577524002667777753000000001352 Q T0589 110 IARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVG 152 (465) Q Consensus 110 ~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~ 152 (465) .. . ...+++.+|++||+..-...+...|.|.+.-.+. T Consensus 128 l~----~--~~~~~~~iG~Vyr~d~~d~~h~~~f~q~e~~~i~ 164 (415) T 3cmq_A 128 LH----A--GLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415) T ss_dssp HH----T--TCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEE T ss_pred HH----H--CCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEE T ss_conf 86----1--8995599864645785333336520356789985 No 59 >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Probab=81.05 E-value=1.5 Score=20.62 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=30.4 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEECH Q ss_conf 7028998468789999999999998769859997289----89778999999658979999860 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGA 430 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~----~sig~k~~~ad~~G~p~~i~ig~ 430 (465) |.+|++.--+++-...+..|+..|.+.|+.|.+|..+ .++...+..+-..---+++++.+ T Consensus 20 ~~dvFiSys~~D~~~~~~~l~~~L~~~g~~v~~d~~~i~~G~~~~~~I~~~i~~s~~~i~iiS~ 83 (154) T 3h16_A 20 PHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLST 83 (154) T ss_dssp SEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEH T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECC T ss_conf 9879997987586999999999999769959995577889986899999999847868999766 No 60 >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Probab=71.96 E-value=3.1 Score=18.49 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=50.0 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHH-HHHCCCCEEEEECHHHHHCCEEEEEECCC Q ss_conf 68702899846878999999999999876985--9997289897789999-99658979999860234388289998588 Q T0589 369 PTPAQVVVVNMQDELMPTYLKVSQQLRQAGLN--VITNFEKRQLGKQFQA-ADKQGIRFCVIIGADEAAAQKSSLKDLQS 445 (465) Q Consensus 369 ~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~--v~~d~~~~sig~k~~~-ad~~G~p~~i~ig~~~~~~~~vtir~r~t 445 (465) ...++|+.++.+.+..+...+..++ .|+. ..+++.+..+.+.+.. ....|+|..++||+ +|.|.-|.... T Consensus 91 ~~~~~vv~vs~d~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lID~----~G~vv~~~~G~ 163 (186) T 1jfu_A 91 GPNFEVVAINIDTRDPEKPKTFLKE---ANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP----QGCEIATIAGP 163 (186) T ss_dssp BTTEEEEEEECCCSCTTHHHHHHHH---TTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT----TSBEEEEEESC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH---HCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEECC----CCEEEEEEECC T ss_conf 4110012123124776888899998---0998743766763189999987557571577999989----99899999898 Q ss_pred CCEEEECHHHHHHHHHHHCC Q ss_conf 86587148999999999639 Q T0589 446 GEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 446 ~~q~~v~~~el~~~l~~~l~ 465 (465) . +...+|+.+.|+..|+ T Consensus 164 ~---~~~~ee~~~~l~~ll~ 180 (186) T 1jfu_A 164 A---EWASEDALKLIRAATG 180 (186) T ss_dssp C---CTTSHHHHHHHHHHHC T ss_pred C---CCCHHHHHHHHHHHHH T ss_conf 9---9985999999999731 No 61 >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Probab=69.27 E-value=4.2 Score=17.62 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=50.1 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCE Q ss_conf 68702899846878999999999999876985999728989778999999658979999860234388289998588865 Q T0589 369 PTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQ 448 (465) Q Consensus 369 ~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q 448 (465) ...++|+-++.++...+...+..++. ...+.+.+|... ...+.+......++|+.++||++ |.|.-+. +| T Consensus 96 ~~~~~vi~i~~~~~~~~~~~~~~~~~-~~~~p~~~D~~~-~~~~~~~~~~~~~iP~t~liD~~----G~I~~~~--~G-- 165 (183) T 3lwa_A 96 TPGGTVLGINVRDYSRDIAQDFVTDN-GLDYPSIYDPPF-MTAASLGGVPASVIPTTIVLDKQ----HRPAAVF--LR-- 165 (183) T ss_dssp CCSEEEEEEECSCCCHHHHHHHHHHT-TCCSCEEECTTC-GGGGGTTTCCTTCCSEEEEECTT----SCEEEEE--CS-- T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHH-CCCCCEEECCCC-HHHHHHCCCCCCCCCEEEEECCC----CEEEEEE--EC-- T ss_conf 78859999855520368999999982-999748987964-59998266886840769999899----9899999--48-- Q ss_pred EEECHHHHHHHHHHHC Q ss_conf 8714899999999963 Q T0589 449 VEVALADLAEEIKRRL 464 (465) Q Consensus 449 ~~v~~~el~~~l~~~l 464 (465) .++-+++.+.|+++| T Consensus 166 -~~~~~~l~~~l~~ll 180 (183) T 3lwa_A 166 -EVTSKDVLDVALPLV 180 (183) T ss_dssp -CCCHHHHHHHHHHHH T ss_pred -CCCHHHHHHHHHHHH T ss_conf -899899999999998 No 62 >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Probab=54.99 E-value=7.4 Score=15.93 Aligned_cols=82 Identities=6% Similarity=0.094 Sum_probs=49.1 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE Q ss_conf 70289984687899999999999987698599972898977899999965897999986023438828999858886587 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE 450 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~ 450 (465) ...++.+..++. .+...+..++. +..+.+..| .+..+.++| .-.++|..++|++ +|.|..+.+..+ . T Consensus 55 ~~~~v~i~~~~~-~~~~~~~~~~~-~~~~p~l~d-~~~~i~~~~---~v~~~P~~~lid~----~G~i~~~~~~~g---~ 121 (136) T 1lu4_A 55 AVTFVGIATRAD-VGAMQSFVSKY-NLNFTNLND-ADGVIWARY---NVPWQPAFVFYRA----DGTSTFVNNPTA---A 121 (136) T ss_dssp TSEEEEEECSSC-HHHHHHHHHHH-TCCSEEEEC-TTSHHHHHT---TCCSSSEEEEECT----TSCEEEECCSSS---C T ss_pred CCCCCCCCCCHH-HHHHHHHHHHH-CCCCCEEEC-CHHHHHHHC---CCCCCCEEEEECC----CCEEEEEECCCC---C T ss_conf 221013332014-57899999984-999761117-548999984---9982457999969----974999845568---7 Q ss_pred ECHHHHHHHHHHHCC Q ss_conf 148999999999639 Q T0589 451 VALADLAEEIKRRLT 465 (465) Q Consensus 451 v~~~el~~~l~~~l~ 465 (465) ++.+++.+.|+++.| T Consensus 122 ~~~~~l~~~l~~L~a 136 (136) T 1lu4_A 122 MSQDELSGRVAALTS 136 (136) T ss_dssp CCHHHHHHHHHHC-- T ss_pred CCHHHHHHHHHHHHC T ss_conf 999999999998519 No 63 >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein structure initiative; 2.45A {Geobacter metallireducens gs-15} Probab=47.47 E-value=9.6 Score=15.15 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=50.0 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEE Q ss_conf 87028998468789999999999998769859997289897789999996589799998602343882899985888658 Q T0589 370 TPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQV 449 (465) Q Consensus 370 ~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~ 449 (465) ..+.++.++.+....+...+..++. ...+.+..| ..+++.+.| ...++|..++||+ +|.|.-|.+... T Consensus 60 ~~~~~i~i~~d~~~~~~~~~~~~~~-~~~~~~~~D-~~~~l~~~~---~v~~~P~~~lid~----~G~I~~~~~G~~--- 127 (154) T 3kcm_A 60 KPFRMLCVSIDEGGKVAVEEFFRKT-GFTLPVLLD-ADKRVGKLY---GTTGVPETFVIDR----HGVILKKVVGAM--- 127 (154) T ss_dssp SSEEEEEEECCTTHHHHHHHHHHHH-CCCCCEEEC-TTCHHHHHH---TCCSBCEEEEECT----TSBEEEEEESCC--- T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHC-CCCCEEEEE-CCCCCCCCC---CCCEEEEEEEECC----CCEEEEEEECCC--- T ss_conf 2222100111122300356678753-997046441-146421125---8614666899888----999999998879--- Q ss_pred EECHHHHHHHHHHHCC Q ss_conf 7148999999999639 Q T0589 450 EVALADLAEEIKRRLT 465 (465) Q Consensus 450 ~v~~~el~~~l~~~l~ 465 (465) +....|++++|++.|+ T Consensus 128 ~~~~~e~~~~l~~~l~ 143 (154) T 3kcm_A 128 EWDHPEVIAFLNNELS 143 (154) T ss_dssp CTTSHHHHHHHHTC-- T ss_pred CCCHHHHHHHHHHHHH T ss_conf 9887999999999999 No 64 >2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A Probab=46.68 E-value=9.9 Score=15.07 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=13.6 Q ss_pred EEEECCH-HHHHHHHHHHHHHHHCCCE Q ss_conf 9984687-8999999999999876985 Q T0589 375 VVVNMQD-ELMPTYLKVSQQLRQAGLN 400 (465) Q Consensus 375 ~v~~~~~-~~~~~a~~i~~~Lr~~gi~ 400 (465) +++..++ -......++.+.|+++||+ T Consensus 48 V~IraD~~~~Y~~Vv~vmd~l~~aGik 74 (74) T 2jwk_A 48 FLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74) T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTCC T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC T ss_conf 998768778778999999999983999 No 65 >2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Probab=43.20 E-value=11 Score=14.72 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=13.6 Q ss_pred CEEEEECHHHHHCCEEEEEECCCCCEEEEC Q ss_conf 799998602343882899985888658714 Q T0589 423 RFCVIIGADEAAAQKSSLKDLQSGEQVEVA 452 (465) Q Consensus 423 p~~i~ig~~~~~~~~vtir~r~t~~q~~v~ 452 (465) |..+.+|-+-+....++|+-....-+..+| T Consensus 288 ~~~~~iDGE~~~~~p~~i~v~P~aL~vlvP 317 (332) T 2bon_A 288 DITFNLDGEPLSGQNFHIEILPAALRCRLP 317 (332) T ss_dssp EEEEEETTEEEEEEEEEEEEEEEEEEEEEC T ss_pred CCEEEECCCCCCCCCEEEEEECCEEEEECC T ss_conf 897993589899985599999998999868 No 66 >1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 intergenic region; hypothetical protein, structural genomics, PSI; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1 Probab=40.95 E-value=12 Score=14.50 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=52.6 Q ss_pred CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCE Q ss_conf 028998468---789999999999998769859997289897-----------789999996589799998602343882 Q T0589 372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQK 437 (465) Q Consensus 372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~ 437 (465) .++.|+|++ +.+..+..++.+.|++.|++..+...+..| ++........|++=+.+. T Consensus 8 ae~sv~Pig~~~~svs~yVa~~i~~i~~sGl~y~~~pmgT~IEG~~~ev~~~v~~~he~~~~~G~~RV~t~--------- 78 (104) T 1lxj_A 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD--------- 78 (104) T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE--------- T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE--------- T ss_conf 99999857899977899999999999975997576698347976799999999999999997699859999--------- Q ss_pred EEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 8999858886587148999999999639 Q T0589 438 SSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 438 vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) ++|=+|..+. .++++=++.++++|+ T Consensus 79 ikID~R~dk~---~~~~~Kv~sV~~kL~ 103 (104) T 1lxj_A 79 IRVGTRTDKH---QTAQDKIDVVLKKIS 103 (104) T ss_dssp EEEECCSSCC---CCHHHHHHHHHHHHT T ss_pred EEEECCCCCC---CCHHHHHHHHHHHHC T ss_conf 9976258987---798999999999864 No 67 >1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.124.1.5 Probab=39.09 E-value=12 Score=14.57 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=22.7 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH Q ss_conf 7028998468789999999999998769859997289897789999 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQA 416 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ 416 (465) .+.|+++--. .......++.+|.+.||.|.+-..+ +.+...++ T Consensus 135 ~~~V~v~Esr--P~~~G~~la~~L~~~Gi~v~~i~D~-a~~~~m~~ 177 (276) T 1vb5_A 135 RFKVILTESS--PDYEGLHLARELEFSGIEFEVITDA-QMGLFCRE 177 (276) T ss_dssp CEEEEEECCT--TTTHHHHHHHHHHHTTCCEEEECGG-GHHHHHTT T ss_pred CEEEEEECCC--CCCCCHHHHHHHHHCCCCEEEECHH-HHHHHHHH T ss_conf 6699997377--6556589999999719833895556-89999663 No 68 >2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} Probab=38.76 E-value=13 Score=14.27 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=43.3 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH--------CCCCEEEEECHHHHHCCEEEE Q ss_conf 687028998468789999999999998769859997289897789999996--------589799998602343882899 Q T0589 369 PTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADK--------QGIRFCVIIGADEAAAQKSSL 440 (465) Q Consensus 369 ~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~--------~G~p~~i~ig~~~~~~~~vti 440 (465) ...+.|+.++.++. +...+..++. ...+.+..| .++++.+.|.-... ...|-.++||+ +|.|.. T Consensus 62 ~~~~~vv~vs~d~~--~~~~~~~~~~-~~~~~~l~D-~~~~~~~~~gv~~~~~~~~~~~~~~p~~fvID~----~G~V~~ 133 (157) T 2ywn_A 62 QVNAVVLGISVDPP--FSNKAFKEHN-KLNFTILSD-YNREVVKKYNVAWEFPALPGYVLAKRAVFVIDK----EGKVRY 133 (157) T ss_dssp TCSSEEEEEESSCH--HHHHHHHHHT-TCCSEEEEC-TTSHHHHHTTCEEECTTSTTCEEECEEEEEECT----TSBEEE T ss_pred CCCCEEEECCCCCH--HHHHHHHHHC-CCCCCEEEC-CCHHHHHHCCCEECCCCCCCCCCEEEEEEEECC----CCEEEE T ss_conf 47747872258999--9999999966-999877887-963799984980124557887640028999989----998999 Q ss_pred EECCCCCEEEECHHHHHHHHHHH Q ss_conf 98588865871489999999996 Q T0589 441 KDLQSGEQVEVALADLAEEIKRR 463 (465) Q Consensus 441 r~r~t~~q~~v~~~el~~~l~~~ 463 (465) ..+...--.+...+++.+.|+.+ T Consensus 134 ~~~~~~~~~~~~~~~il~~l~~L 156 (157) T 2ywn_A 134 KWVSDDPTKEPPYDEIEKVVKSL 156 (157) T ss_dssp EEEESSTTCCCCHHHHHHHHHHT T ss_pred EEECCCCCCCCCHHHHHHHHHHH T ss_conf 99828988999999999999955 No 69 >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Probab=38.11 E-value=13 Score=14.21 Aligned_cols=53 Identities=6% Similarity=0.109 Sum_probs=35.1 Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 8599972898977899999965897999986023438828999858886587148999999999639 Q T0589 399 LNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 399 i~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) +.+.. |.+.++.++| .-.++|..++||++ |.|.... | .++.+++.+.|++++| T Consensus 83 ~~~l~-d~~~~~~~~~---~v~~~P~~~lid~~----G~i~~~~---g---~~~~~~l~~~l~~L~~ 135 (136) T 1zzo_A 83 FTQLA-DTDGSVWANF---GVTQQPAYAFVDPH----GNVDVVR---G---RMSQDELTRRVTALTS 135 (136) T ss_dssp SEEEE-CTTCHHHHHT---TCCSSSEEEEECTT----CCEEEEE---S---CCCHHHHHHHHHHHC- T ss_pred EEEEH-HHHHHHHHHC---CCCCCCEEEEECCC----CEEEEEE---C---CCCHHHHHHHHHHHHC T ss_conf 14440-2479999984---99805679999699----8499998---9---9999999999999867 No 70 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Probab=36.47 E-value=14 Score=14.04 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=21.7 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCH Q ss_conf 9999999999999739925006543326 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERL 56 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~ 56 (465) ...|.+.+-+.|+++|+..|.+..|.|. T Consensus 62 ~~eiR~~fl~fF~~~gH~~i~s~pvvp~ 89 (739) T 2ztg_A 62 LDEMREYYLNFFERRGHGRIERYPVVAR 89 (739) T ss_dssp HHHHHHHHHHHHHTTTCEECCCCCSBCT T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCC T ss_conf 9999999999998789988078581889 No 71 >3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Probab=36.21 E-value=13 Score=14.27 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.1 Q ss_pred HHHHHHCCCC Q ss_conf 9999860898 Q T0589 280 ITGVRNLGVP 289 (465) Q Consensus 280 ~~~~~~~g~~ 289 (465) ...+...|++ T Consensus 165 a~~L~~~GI~ 174 (315) T 3ecs_A 165 AKALCHLNVP 174 (315) T ss_dssp HHHHHTTTCC T ss_pred HHHHHHCCCC T ss_conf 9999977998 No 72 >1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1 Probab=35.68 E-value=15 Score=13.95 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=46.6 Q ss_pred CEEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCEE Q ss_conf 02899846--8789999999999998769859997289897-----------7899999965897999986023438828 Q T0589 372 AQVVVVNM--QDELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQKS 438 (465) Q Consensus 372 ~~V~v~~~--~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~v 438 (465) .++.++|+ ++++..+..++.+.|++.|++..+...+..| .+........|.+=+.+. + T Consensus 10 v~~sv~P~g~~~s~s~~V~~vi~~i~~sGl~y~v~pmgT~IEGe~dev~~~vk~~~e~~~~~G~~RV~t~---------i 80 (109) T 1yqh_A 10 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITS---------I 80 (109) T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEE---------E T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE---------E T ss_conf 9999984689985799999999999974996586698257976899999999999999997699869999---------9 Q ss_pred EEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 99985888658714899999999963 Q T0589 439 SLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 439 tir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +|-.|..+.+ ++++-++-++++| T Consensus 81 KId~R~dk~~---ti~~Kv~~v~~kl 103 (109) T 1yqh_A 81 KIHYRPSTGV---TIDEKVWKYRDEY 103 (109) T ss_dssp EEECCTTTCC---CHHHHHGGGCTTC T ss_pred EEEECCCCCC---CHHHHHHHHHHHH T ss_conf 9885069887---8899999999986 No 73 >3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Probab=33.15 E-value=16 Score=13.69 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=29.4 Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEE Q ss_conf 8998468789999999999998769859997289897789999996589799 Q T0589 374 VVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFC 425 (465) Q Consensus 374 V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~ 425 (465) +.++.+.+.+...+.+..+.|+++||++.+- ++.+.....+-|..+|++.. T Consensus 155 ~g~i~~~D~~R~~a~~~I~~L~~~Gi~v~ml-TGD~~~~a~~ia~~lgi~~~ 205 (287) T 3a1c_A 155 EGIIAVSDTLKESAKPAVQELKRMGIKVGMI-TGDNWRSAEAISRELNLDLV 205 (287) T ss_dssp EEEEEEECCBCTTHHHHHHHHHHTTCEEEEE-CSSCHHHHHHHHHHHTCSEE T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHHHCCCCEE T ss_conf 9999607878615999999998769978997-58977999999986497458 No 74 >2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Probab=30.90 E-value=17 Score=13.44 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=25.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC Q ss_conf 8267999999999999999973992500654332 Q T0589 22 LPSEKRLELYLLDTIRRVYESYGFTPIETPAVER 55 (465) Q Consensus 22 ~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~ 55 (465) +|.+.+.+....+.+.+.+++.|- .+..|.|.- T Consensus 1 ~p~~sr~~~~F~~~L~~F~~~~G~-~~~~P~i~g 33 (96) T 2jxj_A 1 GPLGSRVRLDFLDQLAKFWELQGS-TLKIPVVER 33 (96) T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTC-CCCCCEETT T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCCC T ss_conf 985200799999999999999499-897984899 No 75 >1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6 Probab=30.14 E-value=18 Score=13.36 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECC Q ss_conf 79999999999999999739925006 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIET 50 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~ 50 (465) +..+-..|-..+.+.+++.|+.-+.+ T Consensus 35 E~~~~l~vA~~l~~~L~~~G~~V~~~ 60 (326) T 1xov_A 35 EIKEAEKVLNAASDELKREGHNVKTF 60 (326) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 99999999999999998579979999 No 76 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Probab=29.20 E-value=18 Score=13.25 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=21.1 Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHCCCCEEE Q ss_conf 899846878999999999999876985-99972898977899999965897999 Q T0589 374 VVVVNMQDELMPTYLKVSQQLRQAGLN-VITNFEKRQLGKQFQAADKQGIRFCV 426 (465) Q Consensus 374 V~v~~~~~~~~~~a~~i~~~Lr~~gi~-v~~d~~~~sig~k~~~ad~~G~p~~i 426 (465) |.+|+.++.+.+.+-++++.|+++|-. +.+...+.-+...+......|+--++ T Consensus 651 v~ics~d~~y~~~vp~l~~~Lk~ag~~~i~VilgG~iP~~d~~~L~~aGV~~if 704 (727) T 1req_A 651 VGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIY 704 (727) T ss_dssp EEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEE T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE T ss_conf 999178745588999999999967998857998077887879999977988684 No 77 >1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: d.58.48.1 Probab=29.13 E-value=18 Score=13.25 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=51.9 Q ss_pred CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCC-----CCH-------HHHHHHHHHCCCCEEEEECHHHHHCC Q ss_conf 028998468---789999999999998769859997289-----897-------78999999658979999860234388 Q T0589 372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEK-----RQL-------GKQFQAADKQGIRFCVIIGADEAAAQ 436 (465) Q Consensus 372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~-----~si-------g~k~~~ad~~G~p~~i~ig~~~~~~~ 436 (465) .++.++|++ +.+..+..++.+.|++.|++..+...+ .++ ++......+.|++=+.+. T Consensus 4 aeisv~Pigt~~~Svs~yVa~~i~~i~~sGl~y~~~pmgT~iEge~~dev~~~i~~~~e~~~~~G~~RV~t~-------- 75 (99) T 1lxn_A 4 AELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTT-------- 75 (99) T ss_dssp EEEEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEEE-------- T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEE-------- T ss_conf 999998578999878999999999999759966745882265068899999999999999997799869999-------- Q ss_pred EEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 2899985888658714899999999963 Q T0589 437 KSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 437 ~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) ++|=+|..+++ ++++=++.++++| T Consensus 76 -ikID~R~dk~~---~~~~Kv~sV~~kl 99 (99) T 1lxn_A 76 -LKIDDRRDADR---GLRDKVESVKEKI 99 (99) T ss_dssp -EEEEEESSSCC---CHHHHHHHHHHHC T ss_pred -EEEEECCCCCC---CHHHHHHHHHHHC T ss_conf -99760479877---8899999999539 No 78 >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Probab=26.27 E-value=21 Score=12.92 Aligned_cols=64 Identities=9% Similarity=0.195 Sum_probs=38.2 Q ss_pred HHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 999999876985--99972898977899999965897999986023438828999858886587148999999999639 Q T0589 389 KVSQQLRQAGLN--VITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 389 ~i~~~Lr~~gi~--v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) .+.+-+.+.++. +.+| .+..+.+. ..-.++|..++||+ +|.|.-+.. | ..+.+++.+.|+++|+ T Consensus 80 ~~~~~~~~~~~~~pv~~D-~~~~~~~~---~~v~~~P~~~lid~----~G~i~~~~~--G---~~~~~~l~~~i~~lL~ 145 (148) T 2b5x_A 80 KIKETAAEHDITQPIFVD-SDHALTDA---FENEYVPAYYVFDK----TGQLRHFQA--G---GSGMKMLEKRVNRVLA 145 (148) T ss_dssp HHHHHHHHTTCCSCEEEC-SSCHHHHH---TCCCCSSEEEEECT----TCBEEEEEE--S---CSTTHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCCCC-CCHHHHHH---HCCCEEEEEEEECC----CCEEEEEEE--C---CCCHHHHHHHHHHHHH T ss_conf 665678861478742224-54146776---19638989999979----997999996--8---9999999999999983 No 79 >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Probab=25.23 E-value=22 Score=12.79 Aligned_cols=66 Identities=11% Similarity=0.209 Sum_probs=37.6 Q ss_pred HHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 99999987698599972898977899-99996589799998602343882899985888658714899999999963 Q T0589 389 KVSQQLRQAGLNVITNFEKRQLGKQF-QAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 389 ~i~~~Lr~~gi~v~~d~~~~sig~k~-~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +|.+.|.+.-|-+.+|..+ .-|..+ .+..-.|.|++++|++++- .+ +|.- ..++.+++++.|++.| T Consensus 69 ~V~~~l~~~fV~~~vd~d~-~e~~~l~~~y~v~~~Pti~~ldP~tG---e~-i~~~-----~~~~~~~fl~~L~~fL 135 (153) T 2dlx_A 69 AVKNIIREHFIFWQVYHDS-EEGQRYIQFYKLGDFPYVSILDPRTG---QK-LVEW-----HQLDVSSFLDQVTGFL 135 (153) T ss_dssp HHHHHHHHTEEEEEEESSS-HHHHHHHHHHTCCSSSEEEEECTTTC---CC-CEEE-----SSCCHHHHHHHHHHHH T ss_pred HHHHHHHHHEEEEEECCCC-CCHHHHHHHCCCCCCCEEEEECCCCC---CE-ECCC-----CCCCHHHHHHHHHHHH T ss_conf 9999998646888730245-10577887537788661599738988---55-3025-----7789999999999999 No 80 >2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=25.02 E-value=22 Score=12.76 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=8.4 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHH Q ss_conf 702899846878999999999999 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQL 394 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~L 394 (465) ++.|+++....+......++.+.+ T Consensus 199 ~t~valt~v~~ed~~~l~kLve~i 222 (266) T 2zkr_f 199 CTTVAFTQVNSEDKGALAKLVEAI 222 (266) T ss_dssp CSEEEETTCSSTTTTHHHHHHHHH T ss_pred CEEEEEEECCCCCHHHHHHHHHHH T ss_conf 438999853822388999999999 No 81 >2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Probab=24.80 E-value=22 Score=12.74 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=22.8 Q ss_pred CHHHHHHHHHHCCCCEEEEECH--HHHHCCEEEEEE Q ss_conf 9778999999658979999860--234388289998 Q T0589 409 QLGKQFQAADKQGIRFCVIIGA--DEAAAQKSSLKD 442 (465) Q Consensus 409 sig~k~~~ad~~G~p~~i~ig~--~~~~~~~vtir~ 442 (465) .+-.-++.|...|+|+.+++|. .+...||+|+-- T Consensus 61 ~L~~l~~~a~~~~l~~~~i~DAG~Tei~~gt~Tvla 96 (115) T 2zv3_A 61 ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVA 96 (115) T ss_dssp HHHHHHHHHHHHTCCEEEEEECC-------EEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEE T ss_conf 999999999887995899981997513999878999 No 82 >2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1 Probab=24.65 E-value=22 Score=12.72 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=44.9 Q ss_pred CEEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCEE Q ss_conf 02899846--8789999999999998769859997289897-----------7899999965897999986023438828 Q T0589 372 AQVVVVNM--QDELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQKS 438 (465) Q Consensus 372 ~~V~v~~~--~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~v 438 (465) +++.++|+ ++++..+..++-+.|++.|++..+...+..+ .+....+. .|.+=++++ + T Consensus 5 veisv~Plg~~~s~~~~V~~~I~~i~~sGl~~~~~pmgT~IEGe~d~vm~~vk~~~e~~~-~g~~RV~t~---------i 74 (104) T 2ibo_A 5 IALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEFDELMRILKEALEVAG-QEADNVFAN---------V 74 (104) T ss_dssp EEEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHHHHH-TSCSCEEEE---------E T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEE---------E T ss_conf 999997478898617999999999997399579889866145899999999999999998-799879999---------9 Q ss_pred EEEECCCCCEEEECHHHHHHHHHH Q ss_conf 999858886587148999999999 Q T0589 439 SLKDLQSGEQVEVALADLAEEIKR 462 (465) Q Consensus 439 tir~r~t~~q~~v~~~el~~~l~~ 462 (465) +|-+|+. +++++-++..++ T Consensus 75 KId~r~~-----~sie~Kv~k~~e 93 (104) T 2ibo_A 75 KINVGEI-----LSIDEKLEKYTE 93 (104) T ss_dssp EEEEESC-----CCHHHHTCC--- T ss_pred EEECCCC-----CCHHHHHHHHHH T ss_conf 9976999-----888999999988 No 83 >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Probab=23.97 E-value=23 Score=12.63 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=11.5 Q ss_pred CEEEEEECCHH----HHHHHHHHHHHHHHCC Q ss_conf 02899846878----9999999999998769 Q T0589 372 AQVVVVNMQDE----LMPTYLKVSQQLRQAG 398 (465) Q Consensus 372 ~~V~v~~~~~~----~~~~a~~i~~~Lr~~g 398 (465) .+..|+-+++. .-..++++.+.|.+.| T Consensus 94 ~~faVfGlGDs~Y~~Fc~a~k~ld~~l~~lG 124 (167) T 1ykg_A 94 TAFAVFSLGDTSYEFFCQSGKDFDSKLAELG 124 (167) T ss_dssp CEEEEEEECCTTSSSTTHHHHHHHHHHHHHT T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 5157761550769999999999999999769 No 84 >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides fragilis nctc 9343} Probab=22.74 E-value=24 Score=12.48 Aligned_cols=78 Identities=6% Similarity=0.097 Sum_probs=39.9 Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEE Q ss_conf 02899846878999999999999876985999728989778999999658979999860234388289998588865871 Q T0589 372 AQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEV 451 (465) Q Consensus 372 ~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v 451 (465) +.++.++.++.. +...+... -.+.++....+..+ ..+.-.+...-.|+|..++||+ +|.|.-| .+ T Consensus 68 ~~~v~v~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~y~v~~~P~~~lid~----~G~Iv~~--------~~ 132 (148) T 3fkf_A 68 FAMLGISLDIDR-EAWETAIK-KDTLSWDQVCDFTG-LSSETAKQYAILTLPTNILLSP----TGKILAR--------DI 132 (148) T ss_dssp EEEEEEECCSCH-HHHHHHHH-HTTCCSEEECCSCG-GGCHHHHHTTCCSSSEEEEECT----TSBEEEE--------SC T ss_pred EEEEEEECCCCH-HHHHHHHH-HCCCCCCEEEECCC-HHHHHHHHCCCCCCCEEEEECC----CCEEEEE--------EC T ss_conf 789986347897-88777787-52888757872576-2799999859892468999969----9989999--------77 Q ss_pred CHHHHHHHHHHHC Q ss_conf 4899999999963 Q T0589 452 ALADLAEEIKRRL 464 (465) Q Consensus 452 ~~~el~~~l~~~l 464 (465) .-+++.+.|+++| T Consensus 133 ~~~~~~~~L~~ll 145 (148) T 3fkf_A 133 QGEALTGKLKELL 145 (148) T ss_dssp CHHHHHHHHHHHC T ss_pred CHHHHHHHHHHHH T ss_conf 8078599999997 Done!