Query T0589 3NET, Nostoc sp. PCC 7120, 465 residues Match_columns 465 No_of_seqs 146 out of 4687 Neff 11.0 Searched_HMMs 15564 Date Mon Jul 5 09:42:41 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0589.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0589.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wu7a2 d.104.1.1 (A:3-329) Hi 100.0 0 0 339.2 30.8 324 9-364 1-325 (327) 2 d1z7ma1 d.104.1.1 (A:6-323) AT 100.0 3.8E-44 0 313.1 28.2 316 12-361 1-316 (318) 3 d1h4vb2 d.104.1.1 (B:2-325) Hi 100.0 9.8E-45 0 317.0 24.5 321 12-366 2-323 (324) 4 d1kmma2 d.104.1.1 (A:4-325) Hi 100.0 7.3E-44 0 311.2 23.2 315 11-361 1-316 (322) 5 d1qe0a2 d.104.1.1 (A:1-325) Hi 100.0 2.1E-42 0 301.4 21.3 316 12-363 2-322 (325) 6 d1usya_ d.104.1.1 (A:) ATP pho 100.0 2.6E-34 1.7E-38 246.9 18.3 265 30-352 7-271 (275) 7 d1b76a2 d.104.1.1 (A:1-394) Gl 99.9 2.1E-26 1.4E-30 193.6 12.0 170 15-185 28-214 (331) 8 d1nj8a3 d.104.1.1 (A:0-267) Pr 99.9 1.5E-25 9.5E-30 187.9 14.8 174 1-186 9-193 (268) 9 d1qf6a4 d.104.1.1 (A:242-532) 99.9 2.9E-25 1.9E-29 185.9 13.8 160 14-187 18-182 (291) 10 d1atia2 d.104.1.1 (A:1-394) Gl 99.9 4E-25 2.5E-29 185.1 11.7 173 12-184 25-276 (394) 11 d1nyra4 d.104.1.1 (A:242-532) 99.9 1.1E-24 7.3E-29 182.0 11.1 162 14-188 18-185 (291) 12 d1nj1a3 d.104.1.1 (A:19-283) P 99.9 6.9E-24 4.4E-28 176.7 12.2 170 2-185 8-189 (265) 13 d1hc7a2 d.104.1.1 (A:5-276) Pr 99.9 3E-22 1.9E-26 165.7 12.4 163 2-176 16-186 (272) 14 d1qf6a1 c.51.1.1 (A:533-642) T 99.9 9.3E-22 6E-26 162.3 14.2 100 365-464 1-100 (110) 15 d1nyra1 c.51.1.1 (A:533-645) T 99.9 1.2E-21 7.9E-26 161.5 13.7 105 360-464 2-107 (113) 16 d1nj1a1 c.51.1.1 (A:284-410) P 99.9 7.3E-22 4.7E-26 163.0 11.6 103 362-464 2-109 (127) 17 d1evla1 c.51.1.1 (A:533-642) T 99.9 4.7E-21 3E-25 157.6 13.3 100 365-464 1-100 (110) 18 d1atia1 c.51.1.1 (A:395-505) G 99.9 8.3E-21 5.3E-25 156.0 13.7 98 368-465 1-110 (111) 19 d1g5ha1 c.51.1.1 (A:343-469) T 99.8 5.9E-21 3.8E-25 156.9 10.8 104 362-465 3-112 (127) 20 d1nj8a1 c.51.1.1 (A:268-393) P 99.8 1.1E-20 7.3E-25 155.0 11.8 103 362-465 2-109 (126) 21 d1g5ha2 d.104.1.1 (A:41-330) T 99.8 1.4E-20 8.9E-25 154.4 5.9 171 15-186 26-211 (290) 22 d1hc7a1 c.51.1.1 (A:277-403) P 99.8 3.6E-19 2.3E-23 144.9 12.7 103 362-465 2-110 (127) 23 d1wu7a1 c.51.1.1 (A:330-426) H 99.8 2.2E-18 1.4E-22 139.6 11.0 95 371-465 3-97 (97) 24 d1kmma1 c.51.1.1 (A:326-424) H 99.8 5.9E-18 3.8E-22 136.7 12.1 94 371-464 3-98 (99) 25 d1qe0a1 c.51.1.1 (A:326-420) H 99.7 1E-17 6.6E-22 135.1 10.8 93 370-462 3-95 (95) 26 d1h4vb1 c.51.1.1 (B:326-421) H 99.7 3.8E-17 2.4E-21 131.3 11.9 93 371-464 3-95 (96) 27 d1seta2 d.104.1.1 (A:111-421) 99.5 1.7E-13 1.1E-17 106.7 12.0 170 4-189 30-213 (311) 28 d1c0aa3 d.104.1.1 (A:107-287,A 98.7 3.1E-07 2E-11 64.5 13.0 112 25-163 31-143 (346) 29 d1l0wa3 d.104.1.1 (A:105-294,A 98.6 6.7E-07 4.3E-11 62.3 11.3 113 25-163 39-151 (356) 30 d1e1oa2 d.104.1.1 (A:161-502) 98.5 1E-06 6.7E-11 61.0 10.5 112 25-163 22-134 (342) 31 d1eova2 d.104.1.1 (A:205-557) 98.4 2.6E-06 1.7E-10 58.3 11.7 101 26-154 44-145 (353) 32 d1nnha_ d.104.1.1 (A:) Hypothe 98.4 2.3E-06 1.5E-10 58.6 11.0 108 25-154 13-124 (293) 33 d1b8aa2 d.104.1.1 (A:104-438) 98.3 2.4E-06 1.5E-10 58.6 9.7 100 25-152 33-133 (335) 34 d1n9wa2 d.104.1.1 (A:111-414) 98.1 2.4E-05 1.6E-09 51.8 10.2 101 25-154 14-115 (304) 35 d1jjca_ d.104.1.1 (A:) Phenyl- 98.0 0.00016 1E-08 46.3 13.2 113 29-154 19-143 (266) 36 d1v95a_ c.51.1.1 (A:) Nuclear 98.0 7.6E-05 4.9E-09 48.4 11.4 94 369-462 6-103 (130) 37 d1jjcb5 d.104.1.1 (B:475-681) 96.1 0.03 1.9E-06 31.0 9.0 88 29-133 17-106 (207) 38 d7reqb2 c.23.6.1 (B:476-638) M 64.1 3.6 0.00023 17.0 4.5 58 374-431 90-147 (163) 39 d1lxja_ d.58.48.1 (A:) Hypothe 56.7 4.8 0.00031 16.1 8.7 82 372-465 8-103 (104) 40 d1jfua_ c.47.1.10 (A:) Membran 53.3 5.4 0.00035 15.7 3.5 85 370-464 88-175 (176) 41 d1yqha1 d.58.48.1 (A:1-101) Hy 46.0 7 0.00045 15.0 7.3 81 372-464 7-100 (101) 42 d1qcza_ c.23.8.1 (A:) N5-CAIR 45.6 7.1 0.00046 15.0 8.2 12 369-380 105-116 (163) 43 d2bona1 e.52.1.2 (A:5-299) Lip 45.3 7.2 0.00046 14.9 5.8 30 423-452 259-288 (295) 44 d1lxja_ d.58.48.1 (A:) Hypothe 33.4 11 0.0007 13.7 8.7 82 372-465 8-103 (104) 45 d2fwha1 c.47.1.1 (A:428-544) T 33.2 7.7 0.00049 14.7 1.1 57 400-463 59-117 (117) 46 d1vb5a_ c.124.1.5 (A:) Putativ 29.9 12 0.0008 13.3 1.9 54 371-433 134-187 (274) 47 d1u0ta_ e.52.1.1 (A:) Inorgani 25.0 15 0.00097 12.8 4.8 43 423-465 247-294 (302) 48 d1xova2 c.56.5.6 (A:1-180) End 23.1 16 0.0011 12.5 5.0 24 24-47 22-45 (180) 49 d1bvyf_ c.23.5.1 (F:) FMN-bind 21.4 18 0.0011 12.3 4.3 30 370-399 82-116 (152) 50 d1lxna_ d.58.48.1 (A:) Hypothe 20.9 18 0.0012 12.2 9.0 81 372-464 4-99 (99) 51 d2dlxa1 c.47.1.24 (A:1-147) UB 20.4 19 0.0012 12.2 5.6 66 389-464 69-135 (147) 52 d1w85b2 c.48.1.2 (B:193-324) P 20.4 19 0.0012 12.2 4.7 14 452-465 118-131 (132) 53 d1z5ye1 c.47.1.10 (E:49-184) T 20.1 19 0.0012 12.1 5.7 79 371-463 49-127 (136) 54 d2fi9a1 c.103.1.1 (A:11-128) H 20.1 18 0.0012 12.3 1.0 45 371-416 58-102 (118) 55 d1djqa2 c.3.1.1 (A:490-645) Tr 20.0 19 0.0012 12.1 6.0 77 373-451 41-126 (156) No 1 >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=100.00 E-value=0 Score=339.16 Aligned_cols=324 Identities=26% Similarity=0.440 Sum_probs=266.7 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCC Q ss_conf 65401578521158267999999999999999973992500654332677631156310234343320201112213554 Q T0589 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKS 88 (465) Q Consensus 9 ~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (465) .|++|+||||+|++|..+..+++|++.|+++|.+|||++|.||+|++.++|....+ ....+++|+| T Consensus 1 ~~~~~~~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g--------------~~~~~~~~~f 66 (327) T d1wu7a2 1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG--------------EELLQQTYSF 66 (327) T ss_dssp CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSC--------------TTGGGGSCEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCC--------------HHHHHHHHHH T ss_conf 98777999986689999999999999999999985994767776351754255673--------------5688877654 Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 47888557854776099999999987515774515775240026677777530000000013525752178999999999 Q T0589 89 GDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAII 168 (465) Q Consensus 89 ~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~ 168 (465) .|++|+.++||||+|++++|+++++. ..+.|.|+||+|+|||+++++.+|.|||+|+++|+++.+ +..+|+|++.++ T Consensus 67 ~D~~g~~l~LRpD~T~~iar~~~~~~-~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~--~~~~D~Eii~l~ 143 (327) T d1wu7a2 67 VDKGGREVTLIPEATPSTVRMVTSRK-DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD--SPEADAEVIALA 143 (327) T ss_dssp ECTTSCEEEECSCSHHHHHHHHTTCT-TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC--SHHHHHHHHHHH T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHH-HCCCCCEEECCCCCEECCCCCCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHH T ss_conf 03541011010123521566766521-013652122247410024344687231123234333774--128789999999 Q ss_pred HHHHHHCCC-CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC Q ss_conf 999997399-8259997276889999987245103799999998633005857899888743889889999986412578 Q T0589 169 TEIFEAVNI-GDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDG 247 (465) Q Consensus 169 ~e~~~~lgl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (465) .+++..+++ ..+++.++|..++..++..++..+. .......+...+...+.+...+............+.++..... T Consensus 144 ~~~l~~~~~~~~~~i~l~~~~i~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 221 (327) T d1wu7a2 144 SSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDP--FSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTR 221 (327) T ss_dssp HHHHHHTTTTTSEEEEEEEHHHHHHHHHTTCSSCH--HHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCB T ss_pred HHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99875026542100012326669999986545677--8888887888763220023344333356677765321013420 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC Q ss_conf 88899999998874311125678888889999999986089866323143340674001253788633365544440047 Q T0589 248 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSG 327 (465) Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~g 327 (465) ........ . ......+..+..+...+...+.. .+.+|++++++++||||++|+.+.+. +...++++| T Consensus 222 ~l~~~~~~-------~---~~~~~~~~~l~~l~~~l~~~~~~--~i~~D~~~~r~~~YYtGivFe~~~~~-~~~~~i~~G 288 (327) T d1wu7a2 222 GIDEMARI-------T---GKSSEEIARMAAVEDLLASYGVK--NVRYDFSIVRGLSYYTGIVFEAYDRS-GQFRAILGG 288 (327) T ss_dssp CHHHHHHH-------T---TCCCHHHHHHHHHHHHHHHTTCC--CCEECTTCCTTTTTCSSEEEEEEETT-SSCSCSSEE T ss_pred HHHHHHHH-------H---CHHHHHHHHHHHHHHHHHHCCCC--CEEECCCCCCCCCCCCCEEEEEEECC-CCCCEEEEC T ss_conf 45678764-------0---10126799999988788760876--34676423788777688189999668-971605436 Q ss_pred CCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCC Q ss_conf 7543210320136534485220035789998742024 Q T0589 328 GRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGIL 364 (465) Q Consensus 328 gryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 364 (465) ||||+|++.+++..+||||++++.+++..+....... T Consensus 289 GRYD~L~~~f~g~~~pAvGfsl~~~~l~~~l~~~~~~ 325 (327) T d1wu7a2 289 GRYDNLASLMSGESVPAVGFGMGDAVISLLLKRENVQ 325 (327) T ss_dssp EECTTHHHHHHSCCCCEEEEEEEHHHHHHHHHHTTCC T ss_pred CCCHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCC T ss_conf 5426889864999888688983299999999864999 No 2 >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Probab=100.00 E-value=3.8e-44 Score=313.13 Aligned_cols=316 Identities=16% Similarity=0.258 Sum_probs=245.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC Q ss_conf 01578521158267999999999999999973992500654332677631156310234343320201112213554478 Q T0589 12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT 91 (465) Q Consensus 12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 91 (465) |.-|+|+.|+.|..++.+++|++.++++|.+|||++|.||+|++.++|..+++..++ ...+++|+|.|+ T Consensus 1 ~~lP~g~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~-----------~~~~~~~~~~d~ 69 (318) T d1z7ma1 1 YLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKT-----------FNQEKMFQFIKH 69 (318) T ss_dssp CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSC-----------CCTTSCCEEECT T ss_pred CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCC-----------CCCCCEEEEECC T ss_conf 989983233198899999999999999999869979888866527776403788653-----------443402673269 Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 88557854776099999999987515774515775240026677777530000000013525752178999999999999 Q T0589 92 GSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEI 171 (465) Q Consensus 92 ~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~ 171 (465) +|+.++||||+|++++|+++++. ...|.|+||+|+|||++.++.+|+|||+|+++|+|+.+ +..+|+|++.++.++ T Consensus 70 ~g~~l~LRpD~T~~iaR~~~~~~--~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~--~~~ad~Eii~l~~e~ 145 (318) T d1z7ma1 70 EGQSITLRYDFTLPLVRLYSQIK--DSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGES--ADKSELEILSLALQV 145 (318) T ss_dssp TCCEEEECCCSHHHHHHHHHTCC--SCCCEEEEEEEECCCCCC-------CCEEEEEEEESSC--HHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCHHHHHHHHHC--CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHEECCCCC--HHHHHHHHHHHHHHH T ss_conf 86379752333461999999730--36870021456216874533554202333320002121--056777789999999 Q ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH Q ss_conf 99739982599972768899999872451037999999986330058578998887438898899999864125788889 Q T0589 172 FEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDD 251 (465) Q Consensus 172 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (465) ++.+|++.+++.+||.+++..+++..+..... +..++. +.........................+ ........ T Consensus 146 l~~lgi~~~~i~i~~~~l~~~ll~~~~~~~e~---~~~~l~---~k~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (318) T d1z7ma1 146 IEQLGLNKTVFEIGSAKFFQRLCQLADGSTEL---LTELLL---KKDLSGLNAFIEKNNFSKELRGLLKEI-FITNELSR 218 (318) T ss_dssp HHHHTCSSEEEEEEEHHHHHHHHHHTTTCHHH---HHHHHH---TTCHHHHHHHHTTSCCCHHHHHHHHHH-TTCCCHHH T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHH T ss_conf 99853214402110245788888753201234---578887---640111034555413688999988620-00003678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC Q ss_conf 99999988743111256788888899999999860898663231433406740012537886333655444400477543 Q T0589 252 VLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYE 331 (465) Q Consensus 252 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggryd 331 (465) ...... .......++.+..+..++..++.. ..+.+|++++++++||||++|+.+.++.+ .++++||||| T Consensus 219 ~~~~~~--------~~~~~~~~~~l~~l~~~~~~~~~~-~~i~~d~~~~r~~~YYtG~vF~~~~~~~~--~~i~~GGRYD 287 (318) T d1z7ma1 219 LENLVT--------NTKDDVLISSFDQLKEFSEKLSMI-KPIIIDLGMVPKMDYYTDLMFKAYSSAAN--QPILSGGRYD 287 (318) T ss_dssp HHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTT-SCCEECTTCCCSSTTCCSEEEEEEETTEE--EEEEEEEECH T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCEEEEEEECCCC--CEEEECCCHH T ss_conf 998764--------213788887677776689886002-32266810158975778808999978988--8478894457 Q ss_pred CCHHHHCCCCCCEEECCCHHHHHHHHHHHH Q ss_conf 210320136534485220035789998742 Q T0589 332 ELVGTFIGEKMPGVGISIGLTRLISRLLKA 361 (465) Q Consensus 332 ~li~~~~~~~~~~v~~~~~~~~~~~~~~~~ 361 (465) +|++.++ ..+||||++++.+++..++... T Consensus 288 ~L~~~~g-~~~~avGfsi~ld~i~~~l~~~ 316 (318) T d1z7ma1 288 QLLSNFQ-EEAFAIGFCCHMDTILKALERQ 316 (318) T ss_dssp HHHHTSS-SCCCCEEEEEEHHHHHHHHHHH T ss_pred HHHHHCC-CCCCEEEEEEEHHHHHHHHHHC T ss_conf 8898509-9987799995699999999866 No 3 >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=9.8e-45 Score=317.04 Aligned_cols=321 Identities=21% Similarity=0.302 Sum_probs=238.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC Q ss_conf 01578521158267999999999999999973992500654332677631156310234343320201112213554478 Q T0589 12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT 91 (465) Q Consensus 12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 91 (465) .++++||+|++|..++.+++|++.|+++|.+|||++|+||+|++.++|.++.+...+ ...+.+|.+.|. T Consensus 2 ~~~~kG~rD~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~-----------~~~~~~~~~~d~ 70 (324) T d1h4vb2 2 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATD-----------IVRKEMFTFQDR 70 (324) T ss_dssp CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC-----------------CCSCEEECT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCHH-----------HHHHHHHHHHCC T ss_conf 989999857899999999999999999999869967447764318776134687136-----------778777543025 Q ss_pred CCCEEEECCCCHHHHHHHHHHH-HHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 8855785477609999999998-751577451577524002667777753000000001352575217899999999999 Q T0589 92 GSEARALKFDQTVPLAAYIARH-LNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE 170 (465) Q Consensus 92 ~g~~~~Lrpd~t~~~~r~~~~~-~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e 170 (465) +|+.++||||+|++++|.++.. ....+.|.|+||+|++||+++++.+|.|||+|+++|+++.+ +..+|+|++.++.+ T Consensus 71 ~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~--~~~ad~Eii~l~~~ 148 (324) T d1h4vb2 71 GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE--NPILDAEAVVLLYE 148 (324) T ss_dssp TSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCC--CHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHEEECCCCCCCCCCCCCCCEECCCCCCCCCCC--CHHHHHHHHHHHHH T ss_conf 7730024664331788899876665301065604447320367656887330023112346789--86999999999999 Q ss_pred HHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH Q ss_conf 99973998259997276889999987245103799999998633005857899888743889889999986412578888 Q T0589 171 IFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVD 250 (465) Q Consensus 171 ~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (465) ++..+++....+.++|..+...........+.. ...............+.... ......... T Consensus 149 ~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~ 210 (324) T d1h4vb2 149 CLKELGLRRLKVKLSSVGDPEDRARYNAYLREV-------LSPHREALSEDSKERLEENP-----------MRILDSKSE 210 (324) T ss_dssp HHHHTTCCSCEEEEEECCCHHHHHHHHHHHHHH-------HGGGGGGSCHHHHHHHHHCG-----------GGGGGCCCH T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH T ss_conf 999841457542641058626778888889998-------88888765378899998624-----------454443457 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 99999998874311125678888889999999986089866323143340674001253788633365544440047754 Q T0589 251 DVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRY 330 (465) Q Consensus 251 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggry 330 (465) .....++.....................+......+++ .+.+|++++++++||||++|+.+.+..+...++++|||| T Consensus 211 ~~~~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---~i~iD~~~~rg~~YYtG~vFe~~~~~~g~~~~i~~GGRY 287 (324) T d1h4vb2 211 RDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSV---PYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRY 287 (324) T ss_dssp HHHHHHHHHCCCCGGGGCCHHHHHHHHHHHHHHHHTTC---CEEECTTCCCCSTTCEEEEEEEEC------CEEEEEEEC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCE---EEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCC T ss_conf 78999986238458888748888778887777763324---899864225687561681899997898865715217763 Q ss_pred CCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCC Q ss_conf 321032013653448522003578999874202455 Q T0589 331 EELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNT 366 (465) Q Consensus 331 d~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 366 (465) |+|+..+++..+||||++++.+++..++...+...| T Consensus 288 D~L~~~f~~~~~pAvGfsi~ld~l~~~l~~~g~~~p 323 (324) T d1h4vb2 288 DGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLP 323 (324) T ss_dssp TTHHHHTTCCCCCEEEEEEEHHHHHHHHHHTTCCCC T ss_pred HHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCCC T ss_conf 789986499999758999539999999996599999 No 4 >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=7.3e-44 Score=311.22 Aligned_cols=315 Identities=22% Similarity=0.334 Sum_probs=232.2 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC Q ss_conf 40157852115826799999999999999997399250065433267763115631023434332020111221355447 Q T0589 11 NFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD 90 (465) Q Consensus 11 ~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d 90 (465) ++|+|+||+|++|..++.+++|++.|+++|++|||++|.||+|++.++|.+..+.. .....+.++.+.| T Consensus 1 ~~~~~~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~-----------~~~~~~~~~~~~d 69 (322) T d1kmma2 1 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEV-----------TDVVEKEMYTFED 69 (322) T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTT-----------SHHHHHTCEEEEC T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCC-----------HHHHHHHHHHHHH T ss_conf 99999998878999999999999999999998799476776545288862315762-----------1566777754431 Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 88855785477609999999998751577451577524002667777753000000001352575217899999999999 Q T0589 91 TGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE 170 (465) Q Consensus 91 ~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e 170 (465) .+|+.++||||+|++++|+++++..+...|.|+||+|++||++.++.+|.|||+|+++|+++.+ +..+|+|++.++.+ T Consensus 70 ~~g~~l~Lr~D~T~~iaR~~~~~~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG~~--~~~ad~Eii~l~~~ 147 (322) T d1kmma2 70 RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ--GPDIDAELIMLTAR 147 (322) T ss_dssp TTSCEEEECSCSHHHHHHHHHHTTCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC--SHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHH T ss_conf 1453113463223205688875103210035675315422357888886214566557776366--30657999999999 Q ss_pred HHHHCCCCCEEE-EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH Q ss_conf 999739982599-9727688999998724510379999999863300585789988874388988999998641257888 Q T0589 171 IFEAVNIGDFVI-RINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSV 249 (465) Q Consensus 171 ~~~~lgl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (465) ++..+|+....+ ..++......... ....+.+.+.............. ........+....... T Consensus 148 ~l~~lgl~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~l~~~~~~~--------~~~~~~~~l~~~~~~~ 212 (322) T d1kmma2 148 WWRALGISEHVTLELNSIGSLEARAN-------YRDALVAFLEQHKEKLDEDCKRR--------MYTNPLRVLDSKNPEV 212 (322) T ss_dssp HHHHHTCGGGCEEEEEECCCHHHHHH-------HHHHHHHHHHHC----------------------------------- T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCCCHHH T ss_conf 99861887505871354000878888-------89999999998887663999998--------8651566653036478 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCC Q ss_conf 89999999887431112567888888999999998608986632314334067400125378863336554444004775 Q T0589 250 DDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGR 329 (465) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggr 329 (465) ......+... ...........+..+...+...++ .+.+|++++++++||||++|+.+....+...++++||| T Consensus 213 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~l~~~~i---~~~id~~~~r~~~YYtGivFe~~~~~~g~~~~i~~GGR 284 (322) T d1kmma2 213 QALLNDAPAL-----GDYLDEESREHFAGLCKLLESAGI---AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGR 284 (322) T ss_dssp --------CG-----GGTCCHHHHHHHHHHHHHHHHHTC---CEEECTTCCCSSSCCCSEEEEEECTTCSSSSEEEEEEE T ss_pred HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHCCE---EEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEECCCC T ss_conf 9999887631-----014556778899888887651330---01333133568878788289999678897573522654 Q ss_pred CCCCHHHHCCCCCCEEECCCHHHHHHHHHHHH Q ss_conf 43210320136534485220035789998742 Q T0589 330 YEELVGTFIGEKMPGVGISIGLTRLISRLLKA 361 (465) Q Consensus 330 yd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~ 361 (465) ||+|++.|++..+||||++++.+++..++... T Consensus 285 YD~L~~~f~g~~~pAvGfsi~ld~l~~~l~~~ 316 (322) T d1kmma2 285 YDGLVEQLGGRATPAVGFAMGLERLVLLVQAV 316 (322) T ss_dssp CTTHHHHTTSCCCCEEEEEEEHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHH T ss_conf 27899863899997578995299999999865 No 5 >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Probab=100.00 E-value=2.1e-42 Score=301.40 Aligned_cols=316 Identities=22% Similarity=0.355 Sum_probs=232.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC Q ss_conf 01578521158267999999999999999973992500654332677631156310234343320201112213554478 Q T0589 12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT 91 (465) Q Consensus 12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 91 (465) ++.|+||+|++|..++.+++|++.+.++|.+|||++|+||+|++.++|....++. .....+.+|.+.|+ T Consensus 2 ~~lP~G~rD~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~-----------~~~~~~~~~~~~d~ 70 (325) T d1qe0a2 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDS-----------TDVVQKEMYTFKDK 70 (325) T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC----------------------CCEEECHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCC-----------HHHHHHHHHHHHCC T ss_conf 8889988377999999999999999999998699686676421188750536870-----------46788887654201 Q ss_pred CCCEEEECCCCHHHHHHHHHHHHH--HCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 885578547760999999999875--157745157752400266777775300000000135257521789999999999 Q T0589 92 GSEARALKFDQTVPLAAYIARHLN--DLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIIT 169 (465) Q Consensus 92 ~g~~~~Lrpd~t~~~~r~~~~~~~--~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~ 169 (465) +|..++||||.|.+++|.++.... ..+.|+|+||+|+|||+++++.+|.|||+|+++|+++.+. ..+|+|++.++. T Consensus 71 ~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG~~~--~~ad~Eii~l~~ 148 (325) T d1qe0a2 71 GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAEN--PSVDAEVLAMVM 148 (325) T ss_dssp HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCC--HHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHEECCEEEECCCCCCCCCEEEECCEEECCCCC--CHHHHHHHHHHH T ss_conf 111122454434307899986035433566066514621464155557862122002035427867--399998789999 Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH Q ss_conf 99997399825999727688999998724510379999999863300585789988874388988999998641257888 Q T0589 170 EIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSV 249 (465) Q Consensus 170 e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (465) +++..+|++++.+.+||..++............ .............. ......+. ....... T Consensus 149 ~~l~~~g~~~~~i~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~ 210 (325) T d1qe0a2 149 HIYQSFGLKHLKLVINSVGDMASRKEYNEALVK-------HFEPVIHEFCSDCQ---SRLHTDPM--------RILDCKV 210 (325) T ss_dssp HHHHHTTCCCEEEEEEECCCHHHHHHHHHHHHH-------HHGGGGGGSCHHHH---HTTTTCGG--------GGC---- T ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHCCHH--------HHHHHHC T ss_conf 999862776742355454408888888888888-------78888888777766---55300256--------6654313 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCC---CCCCCC Q ss_conf 89999999887431112567888888999999998608986632314334067400125378863336554---444004 Q T0589 250 DDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEA---LGSICS 326 (465) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~---~~~i~~ 326 (465) ......++.+.... ..........+..+...+...++ .+.+|++++++++||||++|+.+....+. ..++++ T Consensus 211 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~---~~~~D~s~~rg~~YYTGivFe~~~~~~~~~g~~~~i~~ 285 (325) T d1qe0a2 211 DRDKEAIKTAPRIT--DFLNEESKAYYEQVKAYLDDLGI---PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCG 285 (325) T ss_dssp --------CCCCGG--GCCCTTHHHHHHHHHHHHHHHTC---CCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEE T ss_pred CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEC T ss_conf 02478997513303--34556679999999998875232---22106554568778678089999657777776473540 Q ss_pred CCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHC Q ss_conf 7754321032013653448522003578999874202 Q T0589 327 GGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGI 363 (465) Q Consensus 327 ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 363 (465) |||||+|++.|++...||||++++.+++..++..... T Consensus 286 GGRYD~L~~~f~~~~~pAvGfsi~ld~L~~~l~~~~~ 322 (325) T d1qe0a2 286 GGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGI 322 (325) T ss_dssp EEEEESHHHHTTCCCCEEEEEEEEHHHHHHHHHHTTC T ss_pred CCCHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCC T ss_conf 5357779997089999868999659999999997499 No 6 >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=2.6e-34 Score=246.92 Aligned_cols=265 Identities=20% Similarity=0.181 Sum_probs=192.5 Q ss_pred HHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH Q ss_conf 99999999999973992500654332677631156310234343320201112213554478885578547760999999 Q T0589 30 LYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAY 109 (465) Q Consensus 30 ~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~ 109 (465) +++.+++ +.+.++||++|.||++++.+... + ..|.|++|+.++||||+|++++|+ T Consensus 7 ek~~sf~-~~~~~~Gy~~i~tP~~E~~e~~~--~----------------------~~F~D~~g~~l~LRpD~T~~iaR~ 61 (275) T d1usya_ 7 EKVFSFY-SKATKKGFSPFFVPALEKAEEPA--G----------------------NFFLDRKGNLFSIREDFTKTVLNH 61 (275) T ss_dssp HHHHHHH-HHHHHTTCEECCCCSEEECSSCC--S----------------------SCEEETTSCEEEECCCHHHHHHHH T ss_pred HHHHHHH-HHHHHCCCCEEECCCCCCCCCCC--C----------------------CEEECCCCCEEEECCCCCHHHHHH T ss_conf 9999999-99998599643567632230212--6----------------------653859999998789773999999 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 99987515774515775240026677777530000000013525752178999999999999997399825999727688 Q T0589 110 IARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 110 ~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) ++++. .+.|.|+||+|+|||++.+ +.|||+|+++|+++.+ +..+|+|++.++.++++.+|++++++.+||.++ T Consensus 62 ~~~~~--~~~p~k~~Y~g~VfR~~~~---~~re~~Q~G~EiiG~~--~~~aD~Evi~l~~~~l~~lgi~~~~i~l~~~~i 134 (275) T d1usya_ 62 RKRYS--PDSQIKVWYADFVYRYSGS---DLVAEYQLGLEKVPRN--SLDDSLEVLEIIVESASEFFEGPVIVEIGHTGV 134 (275) T ss_dssp HTTCT--TCCCEEEECCEEEEEEETT---EEEEEEEEEEEEESCC--SHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTH T ss_pred HHHCC--CCCCEEEEEEEEEEEECCC---CCCCEEECCCEEECHH--HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCH T ss_conf 99759--9998033577208982798---6454255581453224--578899999999999986230354777557105 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999872451037999999986330058578998887438898899999864125788889999999887431112567 Q T0589 190 LTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQF 269 (465) Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 269 (465) +..+++.++.+ ....+...++.. ....++........+..............+.. +.+...... T Consensus 135 ~~~ll~~l~~~--~~~~l~~~l~~k---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~ 198 (275) T d1usya_ 135 YEDLLKEIPKD--LHEKVLNLIDTK---NLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSP-----------EHLKTMDLP 198 (275) T ss_dssp HHHHHTTSCGG--GHHHHHHHHHTT---CHHHHHHHHHHTCCCCTHHHHHHHHHHHCCSG-----------GGGGTSCCC T ss_pred HHHHHHHCCCH--HHHHHHHHHHHC---CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHH T ss_conf 87876522505--789999998842---66659998765599977888776320004686-----------666515778 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCC Q ss_conf 88888899999999860898663231433406740012537886333655444400477543210320136534485220 Q T0589 270 NLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISI 349 (465) Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggryd~li~~~~~~~~~~v~~~~ 349 (465) ....+++..+...+...+. ...+.+|++++|+++||||++|+.+.++.+ .++++|||||.+.+ .|+|+++ T Consensus 199 ~~~~~~L~~~~~~l~~~~~-~~~i~~D~~~~rgldYYtGivFe~~~~~~~--~~I~~GGRYD~l~e-------~~~G~si 268 (275) T d1usya_ 199 LSVREDLLSASSFLQEKFP-TVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVNGE-------KGVGGSI 268 (275) T ss_dssp HHHHHHHHHHHHHHHHHCS-SSEEEECCCCGGGGGTCSSEEEEEEETTTT--EEEEEEEEEEETTE-------EEEEEEE T ss_pred HHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEEECCCC--CEEEECCCCCCCCC-------EEEEEEE T ss_conf 8889999999999986387-860998265257976669859999999988--96876141168778-------7046899 Q ss_pred HHH Q ss_conf 035 Q T0589 350 GLT 352 (465) Q Consensus 350 ~~~ 352 (465) +.+ T Consensus 269 ~ld 271 (275) T d1usya_ 269 FLE 271 (275) T ss_dssp EEE T ss_pred EEE T ss_conf 740 No 7 >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Probab=99.94 E-value=2.1e-26 Score=193.62 Aligned_cols=170 Identities=14% Similarity=0.080 Sum_probs=125.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCEECCCCCCCHHHHHHCCCCCH--HHHHHHHHCCH---HHHH----- Q ss_conf 78521158267999999999999999--973992500654332677631156310--23434332020---1112----- Q T0589 15 PSGFPEFLPSEKRLELYLLDTIRRVY--ESYGFTPIETPAVERLEVLQAKGNQGD--NIIYGLEPILP---PNRQ----- 82 (465) Q Consensus 15 ~~G~~d~~P~g~~~~~~i~~~~~~~~--~~~G~~ei~~P~i~~~~~~~~sg~~~~--~~~~~~~~~~~---~~~~----- 82 (465) .+|+|||||+|++++++|++.||+.| .+.|++||+||+|+|.+||++|||.+. |.++.+..+.. .... T Consensus 28 ~~G~y~ygP~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~ 107 (331) T d1b76a2 28 LQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQ 107 (331) T ss_dssp CTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEE T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCC T ss_conf 33675258728999999999999998753488599866655886783447520245772244224556668510211135 Q ss_pred HHCCCCCCCCCCEEEECCCCHHHHHH-HHHHHHHHCCC-CCCEEEECCCCCCCC---CCCCCCCEEEEEEEEEEECCCHH Q ss_conf 21355447888557854776099999-99998751577-451577524002667---77775300000000135257521 Q T0589 83 AEKDKSGDTGSEARALKFDQTVPLAA-YIARHLNDLTF-PFARYQMDVVFRGER---AKDGRFRQFRQCDIDVVGREKLS 157 (465) Q Consensus 83 ~~~~~~~d~~g~~~~Lrpd~t~~~~r-~~~~~~~~~~~-~~~~~~~g~~fR~~~---~~~~r~ref~q~~~~~f~~~~~~ 157 (465) ..+....+ .+....|+|+++.++.- +......++++ |++++|+|++||+|. .|+.|+|||+|+++|+|+.+.+. T Consensus 108 ~~~~~~~~-~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~~~~q~ 186 (331) T d1b76a2 108 DLRGPRGG-RGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGED 186 (331) T ss_dssp EECSSSCC-GGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEECGGGH T ss_pred CCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCH T ss_conf 32242123-67751004753355899998677535443560322205232366555544332003111003420487520 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 7899999999999999739982599972 Q T0589 158 LLYDAQMPAIITEIFEAVNIGDFVIRIN 185 (465) Q Consensus 158 ~~~~~e~i~~~~e~~~~lgl~~~~~~~~ 185 (465) ....+..+..+.+.+..+|+....++.. T Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~lr~~ 214 (331) T d1b76a2 187 EYWHRYWVEERLKWWQEMGLSRENLVPY 214 (331) T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHEEEE T ss_conf 6799999999999999862562213642 No 8 >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Probab=99.93 E-value=1.5e-25 Score=187.92 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=145.4 Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH Q ss_conf 96321024654015-78521158267999999999999999973992500654332677631156310234343320201 Q T0589 1 SNAMAKNDKINFST-PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 1 ~~~~~~~~~~~~~~-~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~ 79 (465) .++|.|.+++++.. ++|++.|+|.|++++++|++++++++.+.||++|.||+|.+.++|++||| ++. T Consensus 9 ~el~~k~~L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~------------~~~ 76 (268) T d1nj8a3 9 SDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAE------------HIK 76 (268) T ss_dssp HHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCS------------SSG T ss_pred HHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCC------------CCC T ss_conf 99999769823489998637889018999999999999999984986982023331576603278------------755 Q ss_pred HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC---CCCCCCEEE-EEEEEE Q ss_conf 1122135544----788855785477609999999998751577-4515775240026677---777530000-000013 Q T0589 80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA---KDGRFRQFR-QCDIDV 150 (465) Q Consensus 80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~---~~~r~ref~-q~~~~~ 150 (465) +..++|+... |+.++.++|+|++|+.++.+++....++++ |+++|+++++||+|.+ |+.|.|||+ |.+.++ T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~ 156 (268) T d1nj8a3 77 GFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHT 156 (268) T ss_dssp GGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEE T ss_pred CCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCHHHHHEEEEECCCCCCCCCCCCCCCEEEEEEEEECHHCE T ss_conf 66530147740321220244302457773057765431234121214775116311035555666615788764200033 Q ss_pred EECCCHHHHHHHHHH-HHHHHHHHHCCCCCEEEEECC Q ss_conf 525752178999999-999999997399825999727 Q T0589 151 VGREKLSLLYDAQMP-AIITEIFEAVNIGDFVIRINN 186 (465) Q Consensus 151 f~~~~~~~~~~~e~i-~~~~e~~~~lgl~~~~~~~~~ 186 (465) |+.+.+.+...++.+ ....++|..++++........ T Consensus 157 ~~~~~~~~~~~~~~~~~~y~~if~~l~l~~~~~~~~~ 193 (268) T d1nj8a3 157 AHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPE 193 (268) T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECT T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 1366430267888889999999975175424312455 No 9 >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Probab=99.93 E-value=2.9e-25 Score=185.94 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=143.7 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC Q ss_conf 57852115826799999999999999997399250065433267763115631023434332020111221355447888 Q T0589 14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGS 93 (465) Q Consensus 14 ~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 93 (465) ...|++.|+|.|++++++|++++++++.+.||+||.+|+|.+.++|++||| ++.+.++|+...+. + T Consensus 18 ~~~G~~~~lP~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~-------------~~~~~~~~~~~~~~-~ 83 (291) T d1qf6a4 18 EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGH-------------WDNYKDAMFTTSSE-N 83 (291) T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSH-------------HHHHGGGCEEEEET-T T ss_pred CCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCH-------------HHHCCCHHCCCCCC-C T ss_conf 778544873389999999999999999985998997664564667755210-------------54146301034333-1 Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 55785477609999999998751577-4515775240026677----777530000000013525752178999999999 Q T0589 94 EARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA----KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAII 168 (465) Q Consensus 94 ~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~----~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~ 168 (465) +.++|+|++++.++.+++....++++ |+++||++++||+|.. |+.|+|||+|.|+++|+.+.+......+++..+ T Consensus 84 ~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~~~~ 163 (291) T d1qf6a4 84 REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLV 163 (291) T ss_dssp EEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHH T ss_pred HHHCCCCCCCHHHHHHHHCCCCCHHHCCEEEEECCEEEECCCCCCCCCCCCCCCCEECCCEEEECCHHHHHHHHHHHHHH T ss_conf 22111466767899998721530432372575403354125666654666664643322056736465699999999999 Q ss_pred HHHHHHCCCCCEEEEECCH Q ss_conf 9999973998259997276 Q T0589 169 TEIFEAVNIGDFVIRINNR 187 (465) Q Consensus 169 ~e~~~~lgl~~~~~~~~~~ 187 (465) .+++..+|++...+.++.+ T Consensus 164 ~~i~~~lGl~~~~v~~s~~ 182 (291) T d1qf6a4 164 YDMYSTFGFEKIVVKLSTR 182 (291) T ss_dssp HHHHGGGTCCCCEEEEECC T ss_pred HHHHHHCCCCEEEEEEECC T ss_conf 9999975996499998668 No 10 >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Probab=99.92 E-value=4e-25 Score=185.05 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=133.8 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HCCCCEECCCCCCCHHHHHHCCCCC--HHHHHHHHHCCHHHHHHHCCC Q ss_conf 015785211582679999999999999999--7399250065433267763115631--023434332020111221355 Q T0589 12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYE--SYGFTPIETPAVERLEVLQAKGNQG--DNIIYGLEPILPPNRQAEKDK 87 (465) Q Consensus 12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~--~~G~~ei~~P~i~~~~~~~~sg~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (465) |.-.+|||||||+|+++++||++.||+.|. +.+..+|++|+|+|.+||++|||++ +|++++|..+...++++.+.. T Consensus 25 YGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv~~F~D~mv~c~~~~~~~RaD~l~e 104 (394) T d1atia2 25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLK 104 (394) T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEEC-------------- T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHH T ss_conf 26710155768427999999999999987540477777513344898886206787887644202677775320226776 Q ss_pred C----------------------------------------------------------------------CCCCCCEEE Q ss_conf 4----------------------------------------------------------------------478885578 Q T0589 88 S----------------------------------------------------------------------GDTGSEARA 97 (465) Q Consensus 88 ~----------------------------------------------------------------------~d~~g~~~~ 97 (465) - ...++.... T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t~~~~FNLMF~T~iGp~~~~~~~~y 184 (394) T d1atia2 105 EQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAY 184 (394) T ss_dssp ------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEE T ss_conf 65565543321134555666889999875476866525876178899889867767500221000123233456563367 Q ss_pred ECCCCHHHHHHHHHHHHH--HCCCCCCEEEECCCCCCC---CCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 547760999999999875--157745157752400266---777775300000000135257521789999999999999 Q T0589 98 LKFDQTVPLAAYIARHLN--DLTFPFARYQMDVVFRGE---RAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIF 172 (465) Q Consensus 98 Lrpd~t~~~~r~~~~~~~--~~~~~~~~~~~g~~fR~~---~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~ 172 (465) |||+..+++.-.+.+.+. ..+.|+.++|||+.|||| +.+..|+|||+|++++.|+.+..........+......+ T Consensus 185 LRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~yw~~~~~~f~ 264 (394) T d1atia2 185 LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWW 264 (394) T ss_dssp ECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHH T ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 77013069999799999971567880112432211466376557756332212026899817851577888999999999 Q ss_pred HHCCCCCEEEEE Q ss_conf 973998259997 Q T0589 173 EAVNIGDFVIRI 184 (465) Q Consensus 173 ~~lgl~~~~~~~ 184 (465) ..+|+..-.++. T Consensus 265 ~~lGi~~~~lrf 276 (394) T d1atia2 265 QEMGLSRENLVP 276 (394) T ss_dssp HHTTCCGGGEEE T ss_pred HHHCCCCCCEEE T ss_conf 983688333367 No 11 >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Probab=99.91 E-value=1.1e-24 Score=181.98 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=143.6 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC-CC Q ss_conf 57852115826799999999999999997399250065433267763115631023434332020111221355447-88 Q T0589 14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD-TG 92 (465) Q Consensus 14 ~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~ 92 (465) .-.|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|+.||| ++...++||+... .+ T Consensus 18 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~-------------~~~~~~~~~~~~~~~~ 84 (291) T d1nyra4 18 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGH-------------WDHYQEDMFPPMQLDE 84 (291) T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTH-------------HHHCTTSSCCCEEETT T ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCC-------------CCCCCCCEEEEEECCC T ss_conf 058505883239999999999999999986998997760235667523145-------------6533540499862254 Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 855785477609999999998751577-4515775240026677----77753000000001352575217899999999 Q T0589 93 SEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA----KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI 167 (465) Q Consensus 93 g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~----~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~ 167 (465) ++.++|+|++++.++.++.....++++ |+++|+++++||+|.+ |+.|+|+|+|.+.++|+.++++...-.+++.. T Consensus 85 ~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~~~~~ 164 (291) T d1nyra4 85 TESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNM 164 (291) T ss_dssp TEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCEECCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEEEEHEEECCCCCCHHHHHHHHHH T ss_conf 43201355634578775545863422243678613322416877665542003656631110005875419999999999 Q ss_pred HHHHHHHCCCCCEEEEECCHH Q ss_conf 999999739982599972768 Q T0589 168 ITEIFEAVNIGDFVIRINNRK 188 (465) Q Consensus 168 ~~e~~~~lgl~~~~~~~~~~~ 188 (465) +.++++.||++...+.++..+ T Consensus 165 ~~~i~~~lGl~~~~v~~~~~d 185 (291) T d1nyra4 165 IIDVYKDFGFEDYSFRLSYRD 185 (291) T ss_dssp HHHHHHHTTCCCEEEEEEECC T ss_pred HHHHHHHCCCCCEEEEEECCC T ss_conf 999862117673699984388 No 12 >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Probab=99.91 E-value=6.9e-24 Score=176.70 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=140.9 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH-HHHHCCCCCHHHHHHHHHCCHH Q ss_conf 6321024654015-7852115826799999999999999997399250065433267-7631156310234343320201 Q T0589 2 NAMAKNDKINFST-PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLE-VLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 2 ~~~~~~~~~~~~~-~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~-~~~~sg~~~~~~~~~~~~~~~~ 79 (465) ++|.|+++++++. .+|++.|+|.|+++++.|+++++++.. .||++|.||++.+.+ +|+.||| +. T Consensus 8 el~~k~~lid~~~~~~G~~~~lP~G~~i~~~i~~~~~~~~~-~G~~ev~~P~l~~~~~l~~~sgh-------------~~ 73 (265) T d1nj1a3 8 NILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILD-RDHEEVLFPLLVPEDELAKEAIH-------------VK 73 (265) T ss_dssp HHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTTSHHH-------------HH T ss_pred HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEHHHHHHHHHHHHHCCCC-------------CC T ss_conf 99997488434789984299851099999999999999998-16822224553105666530256-------------56 Q ss_pred HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC---CCCCCCEEEE-EEEEE Q ss_conf 1122135544----788855785477609999999998751577-4515775240026677---7775300000-00013 Q T0589 80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA---KDGRFRQFRQ-CDIDV 150 (465) Q Consensus 80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~---~~~r~ref~q-~~~~~ 150 (465) .+.++||+.. +..++.++|+|++|+.++.+++....++++ |+++||++++||+|.+ |+.|+|||+| .+.++ T Consensus 74 ~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~ 153 (265) T d1nj1a3 74 GFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHT 153 (265) T ss_dssp HTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEE T ss_pred CCCCCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCEEEEEEEEECCCEE T ss_conf 64655102421675554105875213565357764105424444335887530112135365757778999998433506 Q ss_pred EECCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEEEC Q ss_conf 5257521789999-9999999999739982599972 Q T0589 151 VGREKLSLLYDAQ-MPAIITEIFEAVNIGDFVIRIN 185 (465) Q Consensus 151 f~~~~~~~~~~~e-~i~~~~e~~~~lgl~~~~~~~~ 185 (465) |..+.+....+++ ++....+++..++++....... T Consensus 154 ~~~~~~~~~~e~~~~~~~~~~~~~~l~l~~~~~~~~ 189 (265) T d1nj1a3 154 IHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRP 189 (265) T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECC T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 517778888876566899999996439751688706 No 13 >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Probab=99.88 E-value=3e-22 Score=165.67 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=137.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHH Q ss_conf 63210246540157852115826799999999999999997399250065433267763115631023434332020111 Q T0589 2 NAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNR 81 (465) Q Consensus 2 ~~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~ 81 (465) ++|.|++++++.+++|++.|+|.|++++++|++++++.+.++||++|.||++.+.++|+++|+ ++..+ T Consensus 16 ~l~~~~~l~d~~~~~G~~~~lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~------------~~~~~ 83 (272) T d1hc7a2 16 EVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAE------------HVEGF 83 (272) T ss_dssp HHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------------------C T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCC------------CHHHC T ss_conf 999974884247999717888469999999999999999875976884033435577642256------------21213 Q ss_pred HHHCCCCCCCC----CCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCC--CCCCCEEEEEEEEEEECC Q ss_conf 22135544788----855785477609999999998751577-45157752400266777--775300000000135257 Q T0589 82 QAEKDKSGDTG----SEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERAK--DGRFRQFRQCDIDVVGRE 154 (465) Q Consensus 82 ~~~~~~~~d~~----g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~~--~~r~ref~q~~~~~f~~~ 154 (465) .++|+.+.+.. ++.++|+|++++.++.++.....++++ |+++|+++++||+|..+ +.|.|+|.|.+++.|+.+ T Consensus 84 ~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~ 163 (272) T d1hc7a2 84 SPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT 163 (272) T ss_dssp CTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS T ss_pred CCCEEEEECCCCCCCCCHHHCCCCCCCCEEEHHHCEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHCC T ss_conf 65225642244344441122024544403520103205532111256521332256642122001489999824533100 Q ss_pred CHHHHHHHHHHH-HHHHHHHHCC Q ss_conf 521789999999-9999999739 Q T0589 155 KLSLLYDAQMPA-IITEIFEAVN 176 (465) Q Consensus 155 ~~~~~~~~e~i~-~~~e~~~~lg 176 (465) .+....+++... .....+..+. T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~ 186 (272) T d1hc7a2 164 REEAEEEVRRMLSIYARLAREYA 186 (272) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHC T ss_conf 10103677778888888999840 No 14 >d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.88 E-value=9.3e-22 Score=162.34 Aligned_cols=100 Identities=16% Similarity=0.336 Sum_probs=97.4 Q ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC Q ss_conf 55556870289984687899999999999987698599972898977899999965897999986023438828999858 Q T0589 365 NTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ 444 (465) Q Consensus 365 ~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~ 444 (465) ||.|++|+||+|+|++++...+|.+|++.||+.||+|.+|+++.++|+|+++|+..|+||+|+||++++++|+|+||+|+ T Consensus 1 ~P~~laP~Qv~iipi~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~ki~~a~~~g~p~~iiiG~~E~~~~~V~ir~~~ 80 (110) T d1qf6a1 1 FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRR 80 (110) T ss_dssp CCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESS T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECC T ss_conf 97975871489996168888888999999988532554447765000789999986998999977517768989999888 Q ss_pred CCCEEEECHHHHHHHHHHHC Q ss_conf 88658714899999999963 Q T0589 445 SGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 445 t~~q~~v~~~el~~~l~~~l 464 (465) +++|..++++++++.|++.+ T Consensus 81 ~~~q~~i~~~e~i~~l~~~i 100 (110) T d1qf6a1 81 GKDLGSMDVNEVIEKLQQEI 100 (110) T ss_dssp SCEEEEECHHHHHHHHHHHH T ss_pred CCCEEEEEHHHHHHHHHHHH T ss_conf 99567765999999999999 No 15 >d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Probab=99.87 E-value=1.2e-21 Score=161.52 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=98.4 Q ss_pred HHHCCCCCCCCCCEEEEEECCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEE Q ss_conf 42024555568702899846878-99999999999987698599972898977899999965897999986023438828 Q T0589 360 KAGILNTLPPTPAQVVVVNMQDE-LMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKS 438 (465) Q Consensus 360 ~~~~~~~~~~~p~~V~v~~~~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~v 438 (465) +....||.|++|+||.|+|++++ ..++|.+|++.||++||+|++|+++.++|+|+++|+..|+||+|+||++++++|+| T Consensus 2 ~~~G~~P~~lAP~qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~~g~k~~~a~~~g~p~~iiiG~~E~~~~~v 81 (113) T d1nyra1 2 ETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQV 81 (113) T ss_dssp HHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEE T ss_pred CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCEE T ss_conf 87887985128964899986717875567888877633104124115201002678889984960999984360008999 Q ss_pred EEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 99985888658714899999999963 Q T0589 439 SLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 439 tir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +||+|++++|..|+++|+++.|++.| T Consensus 82 ~vr~~~~~~q~~v~~~e~i~~l~~ei 107 (113) T d1nyra1 82 NVRQYGSQDQETVEKDEFIWNLVDEI 107 (113) T ss_dssp EEEETTSSCCCEEEHHHHHHHHHHHH T ss_pred EEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 99997899578872999999999999 No 16 >d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Probab=99.87 E-value=7.3e-22 Score=163.04 Aligned_cols=103 Identities=20% Similarity=0.356 Sum_probs=97.4 Q ss_pred HCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCC Q ss_conf 0245555687028998468-----78999999999999876985999728989778999999658979999860234388 Q T0589 362 GILNTLPPTPAQVVVVNMQ-----DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQ 436 (465) Q Consensus 362 ~~~~~~~~~p~~V~v~~~~-----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~ 436 (465) ++.||.++||+||.|+|+. +++.++|.+|++.|+++||+|.+|+++.++|+|+++|++.|+||+|+||++++++| T Consensus 2 Gl~~P~~iAP~qV~Iipi~~~~~~e~~~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K~~~a~~~giP~~iiiG~ke~~~~ 81 (127) T d1nj1a1 2 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKG 81 (127) T ss_dssp SEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHHHHTTT T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHEEECCCCCCCC T ss_conf 76378112893699997358886499999999999999865885698751202779999987632753035530020067 Q ss_pred EEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 2899985888658714899999999963 Q T0589 437 KSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 437 ~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +|+||+|+|++|..+++++++++|+++| T Consensus 82 ~v~l~~r~~~~~~~v~~~~~~~~i~~ll 109 (127) T d1nj1a1 82 AAVISRRDTGEKVTADLQGIEETLRELM 109 (127) T ss_dssp EEEEEESSSCCEEEEETTTHHHHHHHHH T ss_pred EEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 7999984799577864999999999999 No 17 >d1evla1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1nyra1 d1nj1a1 Probab=99.86 E-value=4.7e-21 Score=157.63 Aligned_cols=100 Identities=16% Similarity=0.336 Sum_probs=97.3 Q ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC Q ss_conf 55556870289984687899999999999987698599972898977899999965897999986023438828999858 Q T0589 365 NTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ 444 (465) Q Consensus 365 ~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~ 444 (465) ||.|++|+||+|+|++++..+++.+++++||++||+|++|+++.++|+|+++|++.|+||+|+||++++++|+|+||+|+ T Consensus 1 ~P~~laP~qv~ii~i~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~k~a~~~g~p~~iiiG~~E~~~~~v~ik~~~ 80 (110) T d1evla1 1 FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRR 80 (110) T ss_dssp CCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETT T ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECC T ss_conf 98762870689972470356899999986402214577403554048899999974897899977500038858999859 Q ss_pred CCCEEEECHHHHHHHHHHHC Q ss_conf 88658714899999999963 Q T0589 445 SGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 445 t~~q~~v~~~el~~~l~~~l 464 (465) +++|..+++++++++|++.| T Consensus 81 ~~~q~~i~~~e~i~~i~~~l 100 (110) T d1evla1 81 GKDLGSMDVNEVIEKLQQEI 100 (110) T ss_dssp SCEEEEEEHHHHHHHHHHHH T ss_pred CCCEEEECHHHHHHHHHHHH T ss_conf 98336415899999999998 No 18 >d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=99.85 E-value=8.3e-21 Score=155.96 Aligned_cols=98 Identities=20% Similarity=0.369 Sum_probs=92.7 Q ss_pred CCCCCEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHC--------- Q ss_conf 5687028998468---7899999999999987698599972898977899999965897999986023438--------- Q T0589 368 PPTPAQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAA--------- 435 (465) Q Consensus 368 ~~~p~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~--------- 435 (465) .+||+||.|+|+. ++..++|.+|++.|+++|++|.+|+++.++|+||++|+++|+||+|+||++++++ T Consensus 1 ~lAP~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~~~~~gvP~~iiIG~kel~~g~~~~~~~~ 80 (111) T d1atia1 1 QLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLK 80 (111) T ss_dssp GGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTT T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCC T ss_conf 98986799997568977899999998754324530457646989887999999871998999997378652634334567 Q ss_pred CEEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 828999858886587148999999999639 Q T0589 436 QKSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 436 ~~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) ||||||+|+|++|..|+++|++++|+++|+ T Consensus 81 ntV~ir~Rd~~~~~~v~i~e~~~~l~~~l~ 110 (111) T d1atia1 81 DTVTVRDRDTMEQIRLHVDELEGFLRERLR 110 (111) T ss_dssp TEEEEEETTTCCEEEEEHHHHHHHHHHHHC T ss_pred CEEEEEECCCCCEEEEEHHHHHHHHHHHHC T ss_conf 569999868882678889999999999708 No 19 >d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.84 E-value=5.9e-21 Score=156.93 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=95.9 Q ss_pred HCCCCCCCCCCEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEE---ECCCCCHHHHHHHHHHCCCCEEEEECHHHHHC Q ss_conf 0245555687028998468---78999999999999876985999---72898977899999965897999986023438 Q T0589 362 GILNTLPPTPAQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVIT---NFEKRQLGKQFQAADKQGIRFCVIIGADEAAA 435 (465) Q Consensus 362 ~~~~~~~~~p~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~---d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~ 435 (465) .+.+|+++||+||.|+|.+ +++.+.|.+|++.|++.||++.. |+++.++|+|+++|+++|+||+|+||++++++ T Consensus 3 vL~lpp~lAP~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~~~lg~k~~~a~~~giP~~iiiG~~e~~~ 82 (127) T d1g5ha1 3 VLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLEN 82 (127) T ss_dssp EECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHH T ss_pred EEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 78768244894699994688987899999999999998427413334127776899999999970996799995875526 Q ss_pred CEEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 828999858886587148999999999639 Q T0589 436 QKSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 436 ~~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) |+|+||+|+|++|..|++++++++|++.|+ T Consensus 83 ~~V~ir~r~t~~q~~i~i~~l~~~l~~~l~ 112 (127) T d1g5ha1 83 GLIQLRSRDTTMKEMMHISKLRDFLVKYLA 112 (127) T ss_dssp CEEEEEETTTCCEEEEETTSHHHHHHHHHH T ss_pred CEEEEEECCCCCEEEEEHHHHHHHHHHHHH T ss_conf 779999988984378889999999999998 No 20 >d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Probab=99.84 E-value=1.1e-20 Score=155.02 Aligned_cols=103 Identities=20% Similarity=0.337 Sum_probs=95.4 Q ss_pred HCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCC Q ss_conf 0245555687028998468-----78999999999999876985999728989778999999658979999860234388 Q T0589 362 GILNTLPPTPAQVVVVNMQ-----DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQ 436 (465) Q Consensus 362 ~~~~~~~~~p~~V~v~~~~-----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~ 436 (465) ++.||.|+||+||.|+|+. +.+.+++.+|++.|+ +|++|.+|+++.++|+|+++|+++|+||+|+||++++++| T Consensus 2 Glv~P~~lAP~qv~Iipi~~~~~~~~~~~~a~~l~~~L~-~~i~v~~D~~~~~~g~k~~~a~~~giP~~iiiG~ke~~~~ 80 (126) T d1nj8a1 2 GLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLK-GKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENK 80 (126) T ss_dssp BCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHH-TTSCEEECCSCSCHHHHHHHHHHTTCSEEEEECHHHHHTT T ss_pred CCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 788854148845999963688732899999999998726-5305885065123889999998887778875051000077 Q ss_pred EEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 28999858886587148999999999639 Q T0589 437 KSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 437 ~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) +|+||+|++++|..|++++++++|++.|+ T Consensus 81 ~v~lr~R~~~~~~~v~~~~l~~~i~~~l~ 109 (126) T d1nj8a1 81 KITLFRRDTMEKFQVDETQLMEVVEKTLN 109 (126) T ss_dssp EEEEEETTTCCEEEEETTSHHHHHHHHHH T ss_pred EEEEEECCCCCEEEECHHHHHHHHHHHHH T ss_conf 89999848995578729999999999999 No 21 >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.81 E-value=1.4e-20 Score=154.44 Aligned_cols=171 Identities=12% Similarity=-0.034 Sum_probs=128.6 Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCC------ Q ss_conf 78521-15826799999999999999997399250065433267763115631023434332020111221355------ Q T0589 15 PSGFP-EFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDK------ 87 (465) Q Consensus 15 ~~G~~-d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~------ 87 (465) ..|++ ||||+|++++++|++.|++.|.. ...+|.+|-.++.++|++|||...+...++..+........... T Consensus 26 ~~g~~~dyGP~G~~Lk~ni~~~w~~~~v~-~~~~v~~~d~~~~~~~~~sgh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (290) T d1g5ha2 26 LSGCHARFGPLGVELRKNLASQWWSSMVV-FREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAF 104 (290) T ss_dssp HHCCSCCBCHHHHHHHHHHHHHHHHHHTT-TCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC T ss_conf 13465302886799999999999999873-36855621312556677763334233001344100235664035544241 Q ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHH-HHC-CCCCCEEEECCCCCCCC------CCCCCCCEEEEEEEEEEECCCHHHH Q ss_conf 447888557854776099999999987-515-77451577524002667------7777530000000013525752178 Q T0589 88 SGDTGSEARALKFDQTVPLAAYIARHL-NDL-TFPFARYQMDVVFRGER------AKDGRFRQFRQCDIDVVGREKLSLL 159 (465) Q Consensus 88 ~~d~~g~~~~Lrpd~t~~~~r~~~~~~-~~~-~~~~~~~~~g~~fR~~~------~~~~r~ref~q~~~~~f~~~~~~~~ 159 (465) .....+....||||+++++.-.+.+.+ .++ +.|++++|+|++||+|. .|+.|+|||+|+++++|+.++++.. T Consensus 105 ~~~~~~~~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~ 184 (290) T d1g5ha2 105 LENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQ 184 (290) T ss_dssp HHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHH T ss_pred EECCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHH T ss_conf 20126644410665662689998988763247899379986443345555677641330324768413578967750678 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 999999999999997399825999727 Q T0589 160 YDAQMPAIITEIFEAVNIGDFVIRINN 186 (465) Q Consensus 160 ~~~e~i~~~~e~~~~lgl~~~~~~~~~ 186 (465) .-...+..+.+.+..||++...+++.+ T Consensus 185 ~~~~~~~~~~~~~~~lGi~~~~~~~~~ 211 (290) T d1g5ha2 185 WLDFWLRHRLLWWRKFAMSPSNFSSAD 211 (290) T ss_dssp HHHHHHHHHHHHHHTTCSSGGGEEEEE T ss_pred HHHHHHHHHHHHHHHCCCCHHHEEECC T ss_conf 999999999999997398866665224 No 22 >d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Probab=99.80 E-value=3.6e-19 Score=144.92 Aligned_cols=103 Identities=23% Similarity=0.369 Sum_probs=93.0 Q ss_pred HCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEECHHHHHC Q ss_conf 0245555687028998468-----7899999999999987698599972898-977899999965897999986023438 Q T0589 362 GILNTLPPTPAQVVVVNMQ-----DELMPTYLKVSQQLRQAGLNVITNFEKR-QLGKQFQAADKQGIRFCVIIGADEAAA 435 (465) Q Consensus 362 ~~~~~~~~~p~~V~v~~~~-----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~-sig~k~~~ad~~G~p~~i~ig~~~~~~ 435 (465) ++.||.|++|+||.|+|++ ....++|.+|++.|++.||+|.+||++. ++|+|++.|+.+|+||+|+||++++++ T Consensus 2 Gl~~P~~lAP~qv~Iipi~~~~~~~~~~~~a~~i~~~L~~~girv~~Dd~~~~~~g~K~~~a~~~giP~~iiiG~~e~~~ 81 (127) T d1hc7a1 2 GLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEG 81 (127) T ss_dssp BCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHT T ss_pred CCCCCHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHCC T ss_conf 78884203892699998037702679999999999999971980578516520188999999861488067745255507 Q ss_pred CEEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 828999858886587148999999999639 Q T0589 436 QKSSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 436 ~~vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) |+|+||.|+++ +..+++++++++|+++|+ T Consensus 82 ~~v~v~~R~~~-k~~i~~~~~~~~i~~~l~ 110 (127) T d1hc7a1 82 GQAVLASRLGG-KETLPLAALPEALPGKLD 110 (127) T ss_dssp TEEEEEETTSC-CCEEEGGGHHHHHHHHHH T ss_pred CEEEEEECCCC-CCEEEHHHHHHHHHHHHH T ss_conf 66999951577-743509999999999999 No 23 >d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=99.77 E-value=2.2e-18 Score=139.64 Aligned_cols=95 Identities=23% Similarity=0.361 Sum_probs=92.2 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE Q ss_conf 70289984687899999999999987698599972898977899999965897999986023438828999858886587 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE 450 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~ 450 (465) ..+|+|+++++...+++.+|+..||++||+|++|++++++++++++|+..|+||+|+||++++++|+|+||+|++++|.. T Consensus 3 ~~~V~i~~~g~~~~~~~~~l~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~~~~~~~iiiG~~E~~~~~v~ik~l~~~~q~~ 82 (97) T d1wu7a1 3 KKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQEN 82 (97) T ss_dssp SCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEE T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCEEE T ss_conf 76399999087999999999999998899899987888278999999741797588417733447852899999997899 Q ss_pred ECHHHHHHHHHHHCC Q ss_conf 148999999999639 Q T0589 451 VALADLAEEIKRRLT 465 (465) Q Consensus 451 v~~~el~~~l~~~l~ 465 (465) |++++++++|.+++| T Consensus 83 v~~~~l~~~l~~~~s 97 (97) T d1wu7a1 83 VGLDSVVEHLISQAT 97 (97) T ss_dssp EEGGGHHHHHHHCCC T ss_pred EEHHHHHHHHHHCCC T ss_conf 769999999996049 No 24 >d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.76 E-value=5.9e-18 Score=136.74 Aligned_cols=94 Identities=31% Similarity=0.489 Sum_probs=91.4 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCE Q ss_conf 702899846878999999999999876--985999728989778999999658979999860234388289998588865 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQA--GLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQ 448 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~--gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q 448 (465) +++|+|++++++...+|.+++++||++ |++|++|+++.++++++++|++.|+||+|+||++++++|+|+||+|+|++| T Consensus 3 ~vdv~vi~~~~~~~~~a~~la~~LR~~~~gi~v~~~~~~~~l~kq~k~A~~~~~~~~iiiG~~E~~~~~v~vk~l~~~~q 82 (99) T d1kmma1 3 VVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQ 82 (99) T ss_dssp SCSEEEECCSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSEEEECCHHHHHTTEEEEEETTTCCE T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCEEEEEECCCCCE T ss_conf 88799997787999999999999984499829999689987879999997847874421181112146799999999977 Q ss_pred EEECHHHHHHHHHHHC Q ss_conf 8714899999999963 Q T0589 449 VEVALADLAEEIKRRL 464 (465) Q Consensus 449 ~~v~~~el~~~l~~~l 464 (465) ..|++++++++|+++| T Consensus 83 ~~v~~~el~~~l~~~L 98 (99) T d1kmma1 83 TAVAQDSVAAHLRTLL 98 (99) T ss_dssp EEEEHHHHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHH T ss_conf 9976999999999974 No 25 >d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Probab=99.74 E-value=1e-17 Score=135.10 Aligned_cols=93 Identities=26% Similarity=0.477 Sum_probs=89.6 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEE Q ss_conf 87028998468789999999999998769859997289897789999996589799998602343882899985888658 Q T0589 370 TPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQV 449 (465) Q Consensus 370 ~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~ 449 (465) ..++|+|+|++++...++.+|++.||++|++|++|+++.++++++++|++.|+||+|+||.+++++|+|+||+|++++|. T Consensus 3 ~~~dv~ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~~~~~~~iiiG~~E~~~~~v~vk~l~~~~q~ 82 (95) T d1qe0a1 3 ENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESE 82 (95) T ss_dssp CCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEE T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEE T ss_conf 78849999948789999999999999879918832778998999999875489999997651433797999999999789 Q ss_pred EECHHHHHHHHHH Q ss_conf 7148999999999 Q T0589 450 EVALADLAEEIKR 462 (465) Q Consensus 450 ~v~~~el~~~l~~ 462 (465) .+++++++++|++ T Consensus 83 ~i~~~el~~~l~k 95 (95) T d1qe0a1 83 TIELDALVEYFKK 95 (95) T ss_dssp EECTTHHHHHHHC T ss_pred EEEHHHHHHHHCC T ss_conf 9759999999629 No 26 >d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=99.72 E-value=3.8e-17 Score=131.32 Aligned_cols=93 Identities=24% Similarity=0.373 Sum_probs=89.6 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE Q ss_conf 70289984687899999999999987698599972898977899999965897999986023438828999858886587 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE 450 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~ 450 (465) ..+|+|+|++++...++.+|++.||+ |+++++|++++++++++++|++.|+||+|+||.+++++++|+||+|+|++|.. T Consensus 3 ~pdv~iv~~~~~~~~~a~~i~~~LR~-~~~~~~~~~~~~l~kq~k~A~~~~~~~~iiiG~~E~~~~~v~vK~l~~~~q~~ 81 (96) T d1h4vb1 3 GPDLYLIPLTEEAVAEAFYLAEALRP-RLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVR 81 (96) T ss_dssp CCSEEEEESSHHHHHHHHHHHHHHTT-TSCEEECSSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEE T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCEEEEECCCCCEEE T ss_conf 98899997697999999999999975-96699987999989999999984999799756146755937999999995799 Q ss_pred ECHHHHHHHHHHHC Q ss_conf 14899999999963 Q T0589 451 VALADLAEEIKRRL 464 (465) Q Consensus 451 v~~~el~~~l~~~l 464 (465) ++++|++++|+++| T Consensus 82 v~~~el~~~l~~~l 95 (96) T d1h4vb1 82 LSREEVPGYLLQAL 95 (96) T ss_dssp EEGGGHHHHHHHHC T ss_pred EEHHHHHHHHHHHH T ss_conf 87999999999961 No 27 >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Probab=99.50 E-value=1.7e-13 Score=106.71 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=134.0 Q ss_pred CCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH Q ss_conf 21024654015----78521158267999999999999999973992500654332677631156310234343320201 Q T0589 4 MAKNDKINFST----PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP 79 (465) Q Consensus 4 ~~~~~~~~~~~----~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~ 79 (465) +.+.+.++... -+|||-+.+.++++.+.|.+++.+...+.||++|.+|.+...++++.+|+ ++ T Consensus 30 ~~~l~l~d~~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~-------------~p 96 (311) T d1seta2 30 MEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGH-------------FP 96 (311) T ss_dssp HHHHTCBCTTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTC-------------TT T ss_pred HHHCCCCCHHHCEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHCCC-------------CC T ss_conf 97769966000022047537997889999999999998763103434886301111101432035-------------30 Q ss_pred HHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCC-------CCCCCCCEEEEEEEEEE Q ss_conf 1122135544788855785477609999999998751577-451577524002667-------77775300000000135 Q T0589 80 NRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGER-------AKDGRFRQFRQCDIDVV 151 (465) Q Consensus 80 ~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~-------~~~~r~ref~q~~~~~f 151 (465) ...+++|...+ ..++|.|+.+++++.++.....++++ |.|+++.+++||+|. .|+.|+++|+..+..++ T Consensus 97 ~f~~~~y~~~~---~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~ 173 (311) T d1seta2 97 AYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVL 173 (311) T ss_dssp TTGGGSCBBTT---SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEE T ss_pred CCCCCCCCCCC---CCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCHHHHHHCCCCHHHHHEE T ss_conf 01221100133---200203655204555565653323204505776335311321134543120001003323122012 Q ss_pred ECCCHHH--HHHHHHHHHHHHHHHHCCCCCEEEEECCHHH Q ss_conf 2575217--8999999999999997399825999727688 Q T0589 152 GREKLSL--LYDAQMPAIITEIFEAVNIGDFVIRINNRKV 189 (465) Q Consensus 152 ~~~~~~~--~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~ 189 (465) +.+.+.. ....+.+..+.++++.|+++...+.+...++ T Consensus 174 ~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~dl 213 (311) T d1seta2 174 TEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDM 213 (311) T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTS T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC T ss_conf 0244311023899999999998776178600103367787 No 28 >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Probab=98.70 E-value=3.1e-07 Score=64.52 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=72.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCC-CCCCCCCEEEECCCCH Q ss_conf 799999999999999997399250065433267763115631023434332020111221355-4478885578547760 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDK-SGDTGSEARALKFDQT 103 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~~~~Lrpd~t 103 (465) =.+++..|.+.+|+.|...||.||+||+|.+... .|. ...+. .....|..+.|+---. T Consensus 31 ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~---~g~------------------~~~~~~~~~~~~~~~~L~~Spe 89 (346) T d1c0aa3 31 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---EGA------------------RDYLVPSRVHKGKFYALPQSPQ 89 (346) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SSS------------------CCCEEECSSSTTCEEECCSCSH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCC------------------CCCCCCCCCCCCCCCCCCCCHH T ss_conf 9999999999999999988989987985477787---645------------------4442121137996306771879 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 999999999875157745157752400266777775300000000135257521789999 Q T0589 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) ...-++++ ...-++|+||++||++..+..|..||||.++|.-..+........| T Consensus 90 l~lk~ll~------~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E 143 (346) T d1c0aa3 90 LFKQLLMM------SGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVME 143 (346) T ss_dssp HHHHHHHH------TTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHH T ss_pred HHHHHHHH------CCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 99999863------4888548971240212368613567656313434553767589999 No 29 >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Probab=98.55 E-value=6.7e-07 Score=62.29 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=74.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) =.+++..|...+|+.|.+.||.||+||+|..... .|+. .......+..+....|+.--.. T Consensus 39 ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~---eg~~-----------------~~~~~~~~~~~~~~yL~~Spel 98 (356) T d1l0wa3 39 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---EGAR-----------------DFLVPYRHEPGLFYALPQSPQL 98 (356) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SSSC-----------------CCEEECTTSTTEEEECCSCSHH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCCC-----------------CCHHHHHCCCCCCCCCCCCHHH T ss_conf 9999999999999999888989998981246777---6443-----------------2002221132011177728567 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 99999999875157745157752400266777775300000000135257521789999 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) ..-+..+ + ..-++|+++++||++..+..|.-||+|.++|.-..+........| T Consensus 99 ~lk~ll~----~--g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E 151 (356) T d1l0wa3 99 FKQMLMV----A--GLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNE 151 (356) T ss_dssp HHHHHHH----T--TCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHH T ss_pred HHHHHHH----C--CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7777523----2--368679982123522268754045668877666788878999999 No 30 >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Probab=98.48 E-value=1e-06 Score=61.00 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=72.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCC-CCCCCCEEEECCCCH Q ss_conf 7999999999999999973992500654332677631156310234343320201112213554-478885578547760 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKS-GDTGSEARALKFDQT 103 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~g~~~~Lrpd~t 103 (465) -.+++..|...+|+.|...||.||+||+|.... +|+... .|.. .+-.+....|..--. T Consensus 22 ~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~----~~~~~~-----------------~f~~~~~~~~~~~yL~~Spq 80 (342) T d1e1oa2 22 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP----GGASAR-----------------PFITHHNALDLDMYLRIAPE 80 (342) T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC----CSSCCC-----------------CCEEEETTTTEEEEECSCSH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCCCC-----------------CEEECCCCCCCCCCCCHHHH T ss_conf 999999999999999988889999898764327----987886-----------------42314667775120023267 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH Q ss_conf 999999999875157745157752400266777775300000000135257521789999 Q T0589 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ 163 (465) Q Consensus 104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e 163 (465) ...-++.+ + ..-++||++++||.|..+..|..||||.++|.-..+..+.....| T Consensus 81 l~~k~~l~----~--g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e 134 (342) T d1e1oa2 81 LYLKRLVV----G--GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTE 134 (342) T ss_dssp HHHHHHHH----H--TCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHH T ss_pred HHHHHHHH----H--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99898766----2--246213420002455431111078887889987511666777656 No 31 >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=98.43 E-value=2.6e-06 Score=58.34 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=65.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH Q ss_conf 99999999999999997399250065433267763115631023434332020111221355447888557854776099 Q T0589 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP 105 (465) Q Consensus 26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~ 105 (465) .+++.+|...+|+.|.+.||.||+||+|.+.. +++.. +.|.. ...+....|+---... T Consensus 44 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~----~eg~~-----------------~~f~~-~~~~~~~yL~~Spel~ 101 (353) T d1eova2 44 FRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEGGS-----------------SVFEV-TYFKGKAYLAQSPQFN 101 (353) T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSSSS-----------------CCCEE-EETTEEEEECSCTHHH T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCHH-----------------CCCCC-EEECCCCEECCCHHHH T ss_conf 99999999999999988899998897317778----85010-----------------45412-1007750221321134 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEECC Q ss_conf 999999987515774515775240026677777-5300000000135257 Q T0589 106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGRE 154 (465) Q Consensus 106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~~~ 154 (465) .-+..+ . ..-++|||+++||+|..+.. +..||||.++|.-..+ T Consensus 102 lk~ll~----~--g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d 145 (353) T d1eova2 102 KQQLIV----A--DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE 145 (353) T ss_dssp HHHHHH----T--TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSS T ss_pred HHHHHH----C--CCCCCEEECHHHHCCCCCCCCCCCHHCCCCCCCCCCH T ss_conf 566653----1--6566335303323032212114501024430112114 No 32 >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=98.41 E-value=2.3e-06 Score=58.64 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=66.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHH-HHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCH Q ss_conf 7999999999999999973992500654332677-631156310234343320201112213554478885578547760 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEV-LQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQT 103 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~-~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t 103 (465) =.+++..|...+|+.|.+.||.||+||++.+.-. ....+.. .....+ -.+-.|+...|+.--. T Consensus 13 il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~yL~~SPe 76 (293) T d1nnha_ 13 TLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG---------------EGMEPA-EVEIYGVKMRLTHSMI 76 (293) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC---------------CCCCCC-EEEETTEEEEECSCSH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCC---------------CCCCCC-CCCCCCCEEECCCCHH T ss_conf 999999999999999998899997587345667777776556---------------766465-3567896564466863 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC---CCCCCEEEEEEEEEEECC Q ss_conf 999999999875157745157752400266777---775300000000135257 Q T0589 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAK---DGRFRQFRQCDIDVVGRE 154 (465) Q Consensus 104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~---~~r~ref~q~~~~~f~~~ 154 (465) ...-+..+ . ...++||||++||+|... ..+.-||+|.++|.-..+ T Consensus 77 l~lk~lla----~--g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d 124 (293) T d1nnha_ 77 LHKQLAIA----M--GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK 124 (293) T ss_dssp HHHHHHHH----T--TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC T ss_pred HHHHHHHH----H--CCCCCEEECHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC T ss_conf 64799997----2--233210310233047556777756156651111233230 No 33 >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Probab=98.34 E-value=2.4e-06 Score=58.60 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=66.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) =.+++..|...+|+.|.+.||.||+||+|..... .|+. +.+.+ ...++.+.|+---.. T Consensus 33 ~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~---~~~~------------------~~f~~-~~~~~~~yL~~SpE~ 90 (335) T d1b8aa2 33 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGGT------------------ELFPM-KYFEEDAFLAESPQL 90 (335) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCC---SSSS------------------SCCEE-EETTEEEEECSCSHH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CHHH------------------HHCCC-CCCCCCCCCCCCHHH T ss_conf 9999999999999999988999987986576577---2133------------------20121-122344212368578 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEE Q ss_conf 9999999987515774515775240026677777-53000000001352 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVG 152 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~ 152 (465) ..-+. +.+ ...++|||+++||+|..+.. +..||+|.+.+.-. T Consensus 91 ~lkrl----l~~--g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~ 133 (335) T d1b8aa2 91 YKEIM----MAS--GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 133 (335) T ss_dssp HHHHG----GGT--TCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEES T ss_pred HHHHH----HHH--HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 77777----764--06668783302352224543102588766678888 No 34 >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Probab=98.08 E-value=2.4e-05 Score=51.76 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=64.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH Q ss_conf 79999999999999999739925006543326776311563102343433202011122135544788855785477609 Q T0589 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465) Q Consensus 25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~ 104 (465) -.+++.+|...+|+.|...||.||+||++.+... .|+. ..+. .+..+....|+.-... T Consensus 14 ~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~---e~~~------------------~~f~-~~~~~~~~~L~~Spel 71 (304) T d1n9wa2 14 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA---EGGS------------------GLFG-VDYFEKRAYLAQSPQL 71 (304) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC--------------------------------------------------CHH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCCC------------------CEEC-CCCCCCCHHCCCCHHH T ss_conf 9999999999999999888999987986478888---9978------------------5078-7655530101453888 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEEEECC Q ss_conf 999999998751577451577524002667777-75300000000135257 Q T0589 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKD-GRFRQFRQCDIDVVGRE 154 (465) Q Consensus 105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~-~r~ref~q~~~~~f~~~ 154 (465) +.+..+.. .-++|||+++||++..+. .+..||+|.+++.-... T Consensus 72 -~k~ll~~g------~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~ 115 (304) T d1n9wa2 72 -YKQIMVGV------FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA 115 (304) T ss_dssp -HHHHHHHH------HSEEEEEEEC-------------CCEEEEEEEESCS T ss_pred -HHHHHHCC------CCCCEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf -88875213------354210143312453555446517899999874213 No 35 >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Probab=98.00 E-value=0.00016 Score=46.27 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=73.7 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCH-HHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCC-----------CCEE Q ss_conf 9999999999999739925006543326-776311563102343433202011122135544788-----------8557 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERL-EVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTG-----------SEAR 96 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~-~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----------g~~~ 96 (465) ...+.+.++++|...||.+++.|.++.. -.|.+-. ...-|..-.....|.+.+.+ ...+ T Consensus 19 l~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn---------~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~ 89 (266) T d1jjca_ 19 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALN---------IPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRL 89 (266) T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGT---------CCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCE T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCC---------CCCCCCHHCCCCEEEEECCCCCCCCCCCCCCHHHH T ss_conf 999999999999876985840882255144232206---------89312001024469982566445676431100000 Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC Q ss_conf 8547760999999999875157745157752400266777775300000000135257 Q T0589 97 ALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGRE 154 (465) Q Consensus 97 ~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~ 154 (465) .||.-.|+..++... ....|.++++.|+|||++.....+..+|.|.+.-.++.. T Consensus 90 lLRTHTS~~q~r~~~----~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~ 143 (266) T d1jjca_ 90 LLRTHTSPMQVRYMV----AHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEG 143 (266) T ss_dssp EECSSSTHHHHHHHH----HSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETT T ss_pred HHCCCCCHHHHHHHH----CCCCCCEEEECCCCEECCCCCCCCCCCCEEEEEEECCCC T ss_conf 011477388899986----149981488403214047888752665302101652410 No 36 >d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Probab=97.99 E-value=7.6e-05 Score=48.43 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=78.2 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC-- Q ss_conf 6870289984687899999999999987698599972--898977899999965897999986023438828999858-- Q T0589 369 PTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNF--EKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ-- 444 (465) Q Consensus 369 ~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~--~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~-- 444 (465) -.|.+.-|+...+++.+||..|-..|++.|+.|++-+ ++-++++.....-..|.||+|+|-++...-+++||.-+- T Consensus 6 s~P~DCeIivvnk~~~~YAe~Ie~rL~~~Gl~vd~lf~n~dv~l~~aL~~vs~~G~~faIlVt~qn~~~~S~TvnIL~g~ 85 (130) T d1v95a_ 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT 85 (130) T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCEEEEEECCC T ss_conf 99955599998775443789999999864977889835875549999998875798369998124054454675200278 Q ss_pred CCCEEEECHHHHHHHHHH Q ss_conf 886587148999999999 Q T0589 445 SGEQVEVALADLAEEIKR 462 (465) Q Consensus 445 t~~q~~v~~~el~~~l~~ 462 (465) -.+...+|++|.+..+.+ T Consensus 86 pqEHRNMPleDAl~lva~ 103 (130) T d1v95a_ 86 PQEHRNMPQADAMVLVAR 103 (130) T ss_dssp CCEEEEEEHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHH T ss_conf 188878878899999999 No 37 >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Probab=96.08 E-value=0.03 Score=31.01 Aligned_cols=88 Identities=16% Similarity=0.078 Sum_probs=61.7 Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC-CCCEEEECCCCHHHHH Q ss_conf 999999999999973992500654332677631156310234343320201112213554478-8855785477609999 Q T0589 29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT-GSEARALKFDQTVPLA 107 (465) Q Consensus 29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~~~~Lrpd~t~~~~ 107 (465) ....++.+|+.+...||+|+.+-.+...+..++.+... ...++..+ +.+.-+||+.+.+++. T Consensus 17 ~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~-----------------~~i~l~NPis~e~~~lR~sLlpgLL 79 (207) T d1jjcb5 17 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDP-----------------PRLLLLNPLAPEKAALRTHLFPGLV 79 (207) T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCC-----------------CSCEESSCSSGGGSEECSCSHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHCCCC-----------------CCEEEECCCCHHHHHHHHHCCHHHH T ss_conf 47999999999997796120077768989997506887-----------------7379738740022365440440778 Q ss_pred HHHHHHHHH-CCCCCCEEEECCCCCCC Q ss_conf 999998751-57745157752400266 Q T0589 108 AYIARHLND-LTFPFARYQMDVVFRGE 133 (465) Q Consensus 108 r~~~~~~~~-~~~~~~~~~~g~~fR~~ 133 (465) +.+..+.+. .++..++|.+|++|+.. T Consensus 80 ~~~~~N~~r~~~~~~~lFEiG~vf~~~ 106 (207) T d1jjcb5 80 RVLKENLDLDRPERALLFEVGRVFRER 106 (207) T ss_dssp HHHHHHHHHSCCSEEEEEEEEEEESSS T ss_pred HHHHHCCCCCCCCCEEEEEEEEEEECC T ss_conf 898747333333430367511065303 No 38 >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Probab=64.10 E-value=3.6 Score=16.95 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=40.8 Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHH Q ss_conf 8998468789999999999998769859997289897789999996589799998602 Q T0589 374 VVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD 431 (465) Q Consensus 374 V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~ 431 (465) |.+|+.++.+.+.+-++.+.|+++|.+..+-..+..+..-+......|+--.|..|.+ T Consensus 90 vvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i~~G~d 147 (163) T d7reqb2 90 ADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMD 147 (163) T ss_dssp EEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEECTTCC T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEECCCCC T ss_conf 9984576104878999999998564560589706888235999996798768419976 No 39 >d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=56.69 E-value=4.8 Score=16.11 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=53.6 Q ss_pred CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------HHHHHHHHHHCCCCEEEEECHHHHHCCE Q ss_conf 028998468---78999999999999876985999728989-----------7789999996589799998602343882 Q T0589 372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQ-----------LGKQFQAADKQGIRFCVIIGADEAAAQK 437 (465) Q Consensus 372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~s-----------ig~k~~~ad~~G~p~~i~ig~~~~~~~~ 437 (465) .++.++|++ +.+..+..++.+.|++.|++..+...+.. +++..+...+.|++=+.+. T Consensus 8 aeisv~Plg~~~~svs~~Va~~i~~l~~sgl~~~~~pmgT~ieGe~dev~~~i~~~~e~~~~~G~~RV~t~--------- 78 (104) T d1lxja_ 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD--------- 78 (104) T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE--------- T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE--------- T ss_conf 89998852289975368999999999957994876797326875889999999999999996699868999--------- Q ss_pred EEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 8999858886587148999999999639 Q T0589 438 SSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 438 vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) ++|=+|..+. .++++=++.++++|+ T Consensus 79 ikId~R~dk~---~~~~~Kv~sV~~~l~ 103 (104) T d1lxja_ 79 IRVGTRTDKH---QTAQDKIDVVLKKIS 103 (104) T ss_dssp EEEECCSSCC---CCHHHHHHHHHHHHT T ss_pred EEEECCCCCC---CCHHHHHHHHHHHHC T ss_conf 8741115998---677888999999854 No 40 >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Probab=53.29 E-value=5.4 Score=15.75 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=47.7 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHH-HCCCCEEEEECHHHHHCCEEEEEECCCC Q ss_conf 8702899846878999999999999876985--999728989778999999-6589799998602343882899985888 Q T0589 370 TPAQVVVVNMQDELMPTYLKVSQQLRQAGLN--VITNFEKRQLGKQFQAAD-KQGIRFCVIIGADEAAAQKSSLKDLQSG 446 (465) Q Consensus 370 ~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~--v~~d~~~~sig~k~~~ad-~~G~p~~i~ig~~~~~~~~vtir~r~t~ 446 (465) ....|+.++.+.+..+...+..++ .++. ..+++....+.+.+.... -.|+|+.++||. +|.|.-|... T Consensus 88 ~~~~vv~vs~d~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~----~G~I~~~~~G-- 158 (176) T d1jfua_ 88 PNFEVVAINIDTRDPEKPKTFLKE---ANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP----QGCEIATIAG-- 158 (176) T ss_dssp TTEEEEEEECCCSCTTHHHHHHHH---TTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT----TSBEEEEEES-- T ss_pred CCCCCCCCCCCCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECC----CCEEEEEEEC-- T ss_conf 333321121001203455556765---0875305640420178998764415777776999949----9989999978-- Q ss_pred CEEEECHHHHHHHHHHHC Q ss_conf 658714899999999963 Q T0589 447 EQVEVALADLAEEIKRRL 464 (465) Q Consensus 447 ~q~~v~~~el~~~l~~~l 464 (465) .. +...+|+++.|+.+| T Consensus 159 ~~-~~~~~e~~~~l~al~ 175 (176) T d1jfua_ 159 PA-EWASEDALKLIRAAT 175 (176) T ss_dssp CC-CTTSHHHHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHC T ss_conf 88-888599999999846 No 41 >d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus cereus [TaxId: 1396]} Probab=46.00 E-value=7 Score=15.00 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=49.9 Q ss_pred CEEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCEE Q ss_conf 02899846--8789999999999998769859997289897-----------7899999965897999986023438828 Q T0589 372 AQVVVVNM--QDELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQKS 438 (465) Q Consensus 372 ~~V~v~~~--~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~v 438 (465) .++.++|+ ++++..+..++.+.|++.|++..+...+.+| ++....+-+.|++=+.+. + T Consensus 7 v~~~v~P~g~~~s~~~~V~~~i~~i~~sGl~y~~~pmgT~IEGe~d~v~~~v~~~~e~~~~~G~~RV~t~---------i 77 (101) T d1yqha1 7 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITS---------I 77 (101) T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEE---------E T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE---------E T ss_conf 9999984689996799999999999974997486699756667999999999999999997699769999---------9 Q ss_pred EEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 99985888658714899999999963 Q T0589 439 SLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 439 tir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +|-.|..+. .++++-++..+++| T Consensus 78 KId~R~dk~---~~~~~Kv~~~~~k~ 100 (101) T d1yqha1 78 KIHYRPSTG---VTIDEKVWKYRDEY 100 (101) T ss_dssp EEECCTTTC---CCHHHHHGGGCTTC T ss_pred EEEEECCCC---CCHHHHHHHHHHHC T ss_conf 998506988---78899999888741 No 42 >d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Probab=45.61 E-value=7.1 Score=14.96 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=5.1 Q ss_pred CCCCEEEEEECC Q ss_conf 687028998468 Q T0589 369 PTPAQVVVVNMQ 380 (465) Q Consensus 369 ~~p~~V~v~~~~ 380 (465) |..+-|..+.++ T Consensus 105 p~g~pv~tv~v~ 116 (163) T d1qcza_ 105 PRGIPVGTLAIG 116 (163) T ss_dssp CTTCCCEECCSS T ss_pred CCCCCCEEEEEE T ss_conf 579996279975 No 43 >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Probab=45.29 E-value=7.2 Score=14.93 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=13.7 Q ss_pred CEEEEECHHHHHCCEEEEEECCCCCEEEEC Q ss_conf 799998602343882899985888658714 Q T0589 423 RFCVIIGADEAAAQKSSLKDLQSGEQVEVA 452 (465) Q Consensus 423 p~~i~ig~~~~~~~~vtir~r~t~~q~~v~ 452 (465) |..+.||-+......++|+-....-+..+| T Consensus 259 ~~~~~iDGE~~~~~p~~i~v~P~aL~vlvP 288 (295) T d2bona1 259 DITFNLDGEPLSGQNFHIEILPAALRCRLP 288 (295) T ss_dssp EEEEEETTEEEEEEEEEEEEEEEEEEEEEC T ss_pred CCEEEECCCCCCCCCEEEEEECCEEEEECC T ss_conf 897993689898986599999798999888 No 44 >d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=33.37 E-value=11 Score=13.71 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=51.3 Q ss_pred CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCE Q ss_conf 028998468---789999999999998769859997289897-----------789999996589799998602343882 Q T0589 372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQK 437 (465) Q Consensus 372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~ 437 (465) .++.|+|++ +.+..+..++.+.|++.|++..+...+..| ++........|++=+++. T Consensus 8 ae~sv~Pigt~~~svs~yVa~~i~~i~~sGl~y~~~pmgT~IEG~~del~~~v~~~he~~~~~G~~RV~t~--------- 78 (104) T d1lxja_ 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD--------- 78 (104) T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE--------- T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE--------- T ss_conf 99999746899976899999999999975997586588536777899999999999999997699859999--------- Q ss_pred EEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 8999858886587148999999999639 Q T0589 438 SSLKDLQSGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 438 vtir~r~t~~q~~v~~~el~~~l~~~l~ 465 (465) ++|=+|..+ ..++++=++-++++|+ T Consensus 79 iKId~R~dk---~~~~~~Kv~sV~~kL~ 103 (104) T d1lxja_ 79 IRVGTRTDK---HQTAQDKIDVVLKKIS 103 (104) T ss_dssp EEEECCSSC---CCCHHHHHHHHHHHHT T ss_pred EEEECCCCC---CCCHHHHHHHHHHHHC T ss_conf 997614798---7798999999999864 No 45 >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Probab=33.24 E-value=7.7 Score=14.74 Aligned_cols=57 Identities=7% Similarity=0.138 Sum_probs=32.8 Q ss_pred EEEEECCCCCH-H-HHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 59997289897-7-8999999658979999860234388289998588865871489999999996 Q T0589 400 NVITNFEKRQL-G-KQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRR 463 (465) Q Consensus 400 ~v~~d~~~~si-g-~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~ 463 (465) .+.+|...... . .-.++..-.|+|..++++++ |.+....|-+|. ++.+++.++|+++ T Consensus 59 ~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~----G~~~~~~~~~G~---~~~~~~~~~l~~~ 117 (117) T d2fwha1 59 LLQANVTANDAQDVALLKHLNVLGLPTILFFDGQ----GQEHPQARVTGF---MDAETFSAHLRDR 117 (117) T ss_dssp EEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTT----SCBCGGGCBCSC---CCHHHHHHHHHHC T ss_pred EEECCCCCCHHHHHHHHHHHEHHHCEEEEEEECC----CCEEECCCCCCC---CCHHHHHHHHHCC T ss_conf 7750233221678888766356544089999089----969732313335---7999999998349 No 46 >d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Probab=29.88 E-value=12 Score=13.33 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=26.8 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHH Q ss_conf 702899846878999999999999876985999728989778999999658979999860234 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEA 433 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~ 433 (465) ++.|+++--. .......++.+|.+.||.|.+-..+ +.+..++++| . +++|-+.+ T Consensus 134 ~~~V~v~Esr--P~~eG~~la~~L~~~GI~vtlI~Ds-a~~~~m~~~d-----~-VivGAd~v 187 (274) T d1vb5a_ 134 RFKVILTESS--PDYEGLHLARELEFSGIEFEVITDA-QMGLFCREAS-----I-AIVGADMI 187 (274) T ss_dssp CEEEEEECCT--TTTHHHHHHHHHHHTTCCEEEECGG-GHHHHHTTCS-----E-EEECCSEE T ss_pred CEEEEEECCC--CCCCHHHHHHHHHHCCCCEEEECCH-HHHHHHHCCC-----E-EEEEEEEE T ss_conf 7289996787--6555099999998749951784404-8999964088-----7-99954599 No 47 >d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} SCOP: d1u0tb_ d1u0ra_ d1u0rd_ d1u0rc_ d1u0rb_ d1y3ia1 Probab=25.00 E-value=15 Score=12.76 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=23.5 Q ss_pred CEEEEECHHH---H-HCCEEEEEECC-CCCEEEECHHHHHHHHHHHCC Q ss_conf 7999986023---4-38828999858-886587148999999999639 Q T0589 423 RFCVIIGADE---A-AAQKSSLKDLQ-SGEQVEVALADLAEEIKRRLT 465 (465) Q Consensus 423 p~~i~ig~~~---~-~~~~vtir~r~-t~~q~~v~~~el~~~l~~~l~ 465 (465) +-.+++|.+. + ..++|+|+.-. .-.-.+.+-.+.-+.|++||. T Consensus 247 ~~~i~~DG~~~~~l~~g~~i~I~~s~~~~~lv~~~~~~f~~~lr~Kl~ 294 (302) T d1u0ta_ 247 DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFR 294 (302) T ss_dssp CEEEEETTTEEEEECTTCEEEEEECSSCEEEEECSCCCHHHHHHHHHT T ss_pred EEEEEEECCEEEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHC T ss_conf 279998053447727898999998797279998479897999898718 No 48 >d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain {Bacteriophage Psa [TaxId: 171618]} Probab=23.08 E-value=16 Score=12.52 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 679999999999999999739925 Q T0589 24 SEKRLELYLLDTIRRVYESYGFTP 47 (465) Q Consensus 24 ~g~~~~~~i~~~~~~~~~~~G~~e 47 (465) .+..+...+-..+.+.+++.|+.- T Consensus 22 ~E~~~~~~ia~~l~~~L~~~G~~V 45 (180) T d1xova2 22 SEIKEAEKVLNAASDELKREGHNV 45 (180) T ss_dssp BHHHHHHHHHHHHHHHHHHTTCEE T ss_pred CHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 279999999999999999679928 No 49 >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Probab=21.38 E-value=18 Score=12.30 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=15.1 Q ss_pred CCCEEEEEECCHH-----HHHHHHHHHHHHHHCCC Q ss_conf 8702899846878-----99999999999987698 Q T0589 370 TPAQVVVVNMQDE-----LMPTYLKVSQQLRQAGL 399 (465) Q Consensus 370 ~p~~V~v~~~~~~-----~~~~a~~i~~~Lr~~gi 399 (465) ......|+-+++. ....+.++.+.|.+.|- T Consensus 82 ~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA 116 (152) T d1bvyf_ 82 KGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGA 116 (152) T ss_dssp TTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 57604666256640666660589999999998699 No 50 >d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=20.88 E-value=18 Score=12.23 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=51.1 Q ss_pred CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCC-----C---HHHHHHH----HHHCCCCEEEEECHHHHHCC Q ss_conf 028998468---7899999999999987698599972898-----9---7789999----99658979999860234388 Q T0589 372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKR-----Q---LGKQFQA----ADKQGIRFCVIIGADEAAAQ 436 (465) Q Consensus 372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~-----s---ig~k~~~----ad~~G~p~~i~ig~~~~~~~ 436 (465) .++.|+|++ +.+..+..++.+.|++.|++..+...+. + +-.-+++ ....|++=+.+. T Consensus 4 aei~v~P~gt~~~svs~yVa~~i~~i~~sGl~y~~~pmgT~IEg~d~dev~~~v~~~he~~~~~G~~RV~t~-------- 75 (99) T d1lxna_ 4 AELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTT-------- 75 (99) T ss_dssp EEEEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEEE-------- T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEE-------- T ss_conf 999997579999878999999999999759975746880353379899999999999999997799869999-------- Q ss_pred EEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 2899985888658714899999999963 Q T0589 437 KSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 437 ~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) ++|=+|..+.+ ++++=++-++++| T Consensus 76 -iKId~R~dk~~---~~~~Kv~sV~~kl 99 (99) T d1lxna_ 76 -LKIDDRRDADR---GLRDKVESVKEKI 99 (99) T ss_dssp -EEEEEESSSCC---CHHHHHHHHHHHC T ss_pred -EEEECCCCCCC---CHHHHHHHHHHHC T ss_conf -99760379777---8899999999549 No 51 >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.39 E-value=19 Score=12.16 Aligned_cols=66 Identities=9% Similarity=0.188 Sum_probs=38.3 Q ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 999999876985999728989778999-9996589799998602343882899985888658714899999999963 Q T0589 389 KVSQQLRQAGLNVITNFEKRQLGKQFQ-AADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465) Q Consensus 389 ~i~~~Lr~~gi~v~~d~~~~sig~k~~-~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l 464 (465) +|.+.+.+.-|-+.+|..+ .-+..+. +..-.|+|++++|++++ |++ +|.- . .++.+++++.|++.| T Consensus 69 ~V~~~l~~~fV~~~v~~~~-~e~~~~~~~y~v~~~Pti~~idp~~---ge~-v~~~-~----~~~~~~fl~~L~~fl 135 (147) T d2dlxa1 69 AVKNIIREHFIFWQVYHDS-EEGQRYIQFYKLGDFPYVSILDPRT---GQK-LVEW-H----QLDVSSFLDQVTGFL 135 (147) T ss_dssp HHHHHHHHTEEEEEEESSS-HHHHHHHHHHTCCSSSEEEEECTTT---CCC-CEEE-S----SCCHHHHHHHHHHHH T ss_pred HHHHHHHHHEEEEEECCCC-HHHHHHHHHEECCCEEEEEEEECCC---CEE-ECCC-C----CCCHHHHHHHHHHHH T ss_conf 9999975245676511110-1356565500037614899980899---857-5024-8----889999999999999 No 52 >d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=20.35 E-value=19 Score=12.16 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=7.2 Q ss_pred CHHHHHHHHHHHCC Q ss_conf 48999999999639 Q T0589 452 ALADLAEEIKRRLT 465 (465) Q Consensus 452 ~~~el~~~l~~~l~ 465 (465) +.+++++.+++.|+ T Consensus 118 ~~~~I~~~i~~ll~ 131 (132) T d1w85b2 118 NFKDVIETAKKVMN 131 (132) T ss_dssp CHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHC T ss_conf 99999999999848 No 53 >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Probab=20.11 E-value=19 Score=12.12 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=38.4 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE Q ss_conf 70289984687899999999999987698599972898977899999965897999986023438828999858886587 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE 450 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~ 450 (465) .+.|..+.......... ....+.-.....+..| .++.+++.| .-.|+|..++||+ +|.|.-+.. |. T Consensus 49 ~~~vi~i~~~~~~~~~~-~~~~~~~~~~~~~~~d-~~~~~~~~~---~v~~~P~~~liD~----~G~i~~~~~--G~--- 114 (136) T d1z5ye1 49 GIRVVGMNYKDDRQKAI-SWLKELGNPYALSLFD-GDGMLGLDL---GVYGAPETFLIDG----NGIIRYRHA--GD--- 114 (136) T ss_dssp TCCEEEEEESCCHHHHH-HHHHHHCCCCSEEEEE-SSCHHHHHH---TCCSBSEEEEECT----TSCEEEEEE--SC--- T ss_pred HHHHCCCCCCCCHHHHH-HHHHHCCCCCCEEECC-CCHHHHHHC---CCCCCCEEEEECC----CCEEEEEEE--CC--- T ss_conf 11001223355304568-8999809863202113-230677751---5577535899968----998999997--68--- Q ss_pred ECHHHHHHHHHHH Q ss_conf 1489999999996 Q T0589 451 VALADLAEEIKRR 463 (465) Q Consensus 451 v~~~el~~~l~~~ 463 (465) ++.+++.+.|++. T Consensus 115 ~~~~~l~~~i~~l 127 (136) T d1z5ye1 115 LNPRVWEEEIKPL 127 (136) T ss_dssp CCHHHHHHHTHHH T ss_pred CCHHHHHHHHHHH T ss_conf 9989999999999 No 54 >d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} Probab=20.08 E-value=18 Score=12.26 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=30.9 Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH Q ss_conf 7028998468789999999999998769859997289897789999 Q T0589 371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQA 416 (465) Q Consensus 371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ 416 (465) +.+++++-.++....-..++.+.|++.||.+++.+.+ +.=+.|+- T Consensus 58 ~peilliGtG~~~~~~~~~~~~~l~~~gI~~EvM~T~-aAcrTfNv 102 (118) T d2fi9a1 58 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG-AAVRTFNV 102 (118) T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH-HHHHHHHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCH-HHHHHHHH T ss_conf 8878998137655689999999999869848995849-99999999 No 55 >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Probab=20.01 E-value=19 Score=12.11 Aligned_cols=77 Identities=9% Similarity=0.025 Sum_probs=45.4 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH---------HHHHHHHCCCCEEEEECHHHHHCCEEEEEEC Q ss_conf 2899846878999999999999876985999728989778---------9999996589799998602343882899985 Q T0589 373 QVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGK---------QFQAADKQGIRFCVIIGADEAAAQKSSLKDL 443 (465) Q Consensus 373 ~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~---------k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r 443 (465) .|+|+-.+..+ -+.+++..|.+.|..|.+-.....++. -.++..+.|+.+..-..-.+++.+.+.+++. T Consensus 41 ~vvi~d~ggg~--ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~ 118 (156) T d1djqa2 41 RVVILNADTYF--MAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNI 118 (156) T ss_dssp EEEEEECCCSS--HHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEET T ss_pred CEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCCEEEEEE T ss_conf 26999659974--7999999999759969999437745431261677899999864152387062888741762378752 Q ss_pred CCCCEEEE Q ss_conf 88865871 Q T0589 444 QSGEQVEV 451 (465) Q Consensus 444 ~t~~q~~v 451 (465) .+....++ T Consensus 119 ~~~~~~~v 126 (156) T d1djqa2 119 WGDGSKRT 126 (156) T ss_dssp TCSCSCCC T ss_pred ECCCCCEE T ss_conf 00011106 Done!