Query         T0589 3NET, Nostoc sp. PCC 7120, 465 residues
Match_columns 465
No_of_seqs    146 out of 4687
Neff          11.0
Searched_HMMs 15564
Date          Mon Jul  5 09:42:41 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0589.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0589.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wu7a2 d.104.1.1 (A:3-329) Hi 100.0       0       0  339.2  30.8  324    9-364     1-325 (327)
  2 d1z7ma1 d.104.1.1 (A:6-323) AT 100.0 3.8E-44       0  313.1  28.2  316   12-361     1-316 (318)
  3 d1h4vb2 d.104.1.1 (B:2-325) Hi 100.0 9.8E-45       0  317.0  24.5  321   12-366     2-323 (324)
  4 d1kmma2 d.104.1.1 (A:4-325) Hi 100.0 7.3E-44       0  311.2  23.2  315   11-361     1-316 (322)
  5 d1qe0a2 d.104.1.1 (A:1-325) Hi 100.0 2.1E-42       0  301.4  21.3  316   12-363     2-322 (325)
  6 d1usya_ d.104.1.1 (A:) ATP pho 100.0 2.6E-34 1.7E-38  246.9  18.3  265   30-352     7-271 (275)
  7 d1b76a2 d.104.1.1 (A:1-394) Gl  99.9 2.1E-26 1.4E-30  193.6  12.0  170   15-185    28-214 (331)
  8 d1nj8a3 d.104.1.1 (A:0-267) Pr  99.9 1.5E-25 9.5E-30  187.9  14.8  174    1-186     9-193 (268)
  9 d1qf6a4 d.104.1.1 (A:242-532)   99.9 2.9E-25 1.9E-29  185.9  13.8  160   14-187    18-182 (291)
 10 d1atia2 d.104.1.1 (A:1-394) Gl  99.9   4E-25 2.5E-29  185.1  11.7  173   12-184    25-276 (394)
 11 d1nyra4 d.104.1.1 (A:242-532)   99.9 1.1E-24 7.3E-29  182.0  11.1  162   14-188    18-185 (291)
 12 d1nj1a3 d.104.1.1 (A:19-283) P  99.9 6.9E-24 4.4E-28  176.7  12.2  170    2-185     8-189 (265)
 13 d1hc7a2 d.104.1.1 (A:5-276) Pr  99.9   3E-22 1.9E-26  165.7  12.4  163    2-176    16-186 (272)
 14 d1qf6a1 c.51.1.1 (A:533-642) T  99.9 9.3E-22   6E-26  162.3  14.2  100  365-464     1-100 (110)
 15 d1nyra1 c.51.1.1 (A:533-645) T  99.9 1.2E-21 7.9E-26  161.5  13.7  105  360-464     2-107 (113)
 16 d1nj1a1 c.51.1.1 (A:284-410) P  99.9 7.3E-22 4.7E-26  163.0  11.6  103  362-464     2-109 (127)
 17 d1evla1 c.51.1.1 (A:533-642) T  99.9 4.7E-21   3E-25  157.6  13.3  100  365-464     1-100 (110)
 18 d1atia1 c.51.1.1 (A:395-505) G  99.9 8.3E-21 5.3E-25  156.0  13.7   98  368-465     1-110 (111)
 19 d1g5ha1 c.51.1.1 (A:343-469) T  99.8 5.9E-21 3.8E-25  156.9  10.8  104  362-465     3-112 (127)
 20 d1nj8a1 c.51.1.1 (A:268-393) P  99.8 1.1E-20 7.3E-25  155.0  11.8  103  362-465     2-109 (126)
 21 d1g5ha2 d.104.1.1 (A:41-330) T  99.8 1.4E-20 8.9E-25  154.4   5.9  171   15-186    26-211 (290)
 22 d1hc7a1 c.51.1.1 (A:277-403) P  99.8 3.6E-19 2.3E-23  144.9  12.7  103  362-465     2-110 (127)
 23 d1wu7a1 c.51.1.1 (A:330-426) H  99.8 2.2E-18 1.4E-22  139.6  11.0   95  371-465     3-97  (97)
 24 d1kmma1 c.51.1.1 (A:326-424) H  99.8 5.9E-18 3.8E-22  136.7  12.1   94  371-464     3-98  (99)
 25 d1qe0a1 c.51.1.1 (A:326-420) H  99.7   1E-17 6.6E-22  135.1  10.8   93  370-462     3-95  (95)
 26 d1h4vb1 c.51.1.1 (B:326-421) H  99.7 3.8E-17 2.4E-21  131.3  11.9   93  371-464     3-95  (96)
 27 d1seta2 d.104.1.1 (A:111-421)   99.5 1.7E-13 1.1E-17  106.7  12.0  170    4-189    30-213 (311)
 28 d1c0aa3 d.104.1.1 (A:107-287,A  98.7 3.1E-07   2E-11   64.5  13.0  112   25-163    31-143 (346)
 29 d1l0wa3 d.104.1.1 (A:105-294,A  98.6 6.7E-07 4.3E-11   62.3  11.3  113   25-163    39-151 (356)
 30 d1e1oa2 d.104.1.1 (A:161-502)   98.5   1E-06 6.7E-11   61.0  10.5  112   25-163    22-134 (342)
 31 d1eova2 d.104.1.1 (A:205-557)   98.4 2.6E-06 1.7E-10   58.3  11.7  101   26-154    44-145 (353)
 32 d1nnha_ d.104.1.1 (A:) Hypothe  98.4 2.3E-06 1.5E-10   58.6  11.0  108   25-154    13-124 (293)
 33 d1b8aa2 d.104.1.1 (A:104-438)   98.3 2.4E-06 1.5E-10   58.6   9.7  100   25-152    33-133 (335)
 34 d1n9wa2 d.104.1.1 (A:111-414)   98.1 2.4E-05 1.6E-09   51.8  10.2  101   25-154    14-115 (304)
 35 d1jjca_ d.104.1.1 (A:) Phenyl-  98.0 0.00016   1E-08   46.3  13.2  113   29-154    19-143 (266)
 36 d1v95a_ c.51.1.1 (A:) Nuclear   98.0 7.6E-05 4.9E-09   48.4  11.4   94  369-462     6-103 (130)
 37 d1jjcb5 d.104.1.1 (B:475-681)   96.1    0.03 1.9E-06   31.0   9.0   88   29-133    17-106 (207)
 38 d7reqb2 c.23.6.1 (B:476-638) M  64.1     3.6 0.00023   17.0   4.5   58  374-431    90-147 (163)
 39 d1lxja_ d.58.48.1 (A:) Hypothe  56.7     4.8 0.00031   16.1   8.7   82  372-465     8-103 (104)
 40 d1jfua_ c.47.1.10 (A:) Membran  53.3     5.4 0.00035   15.7   3.5   85  370-464    88-175 (176)
 41 d1yqha1 d.58.48.1 (A:1-101) Hy  46.0       7 0.00045   15.0   7.3   81  372-464     7-100 (101)
 42 d1qcza_ c.23.8.1 (A:) N5-CAIR   45.6     7.1 0.00046   15.0   8.2   12  369-380   105-116 (163)
 43 d2bona1 e.52.1.2 (A:5-299) Lip  45.3     7.2 0.00046   14.9   5.8   30  423-452   259-288 (295)
 44 d1lxja_ d.58.48.1 (A:) Hypothe  33.4      11  0.0007   13.7   8.7   82  372-465     8-103 (104)
 45 d2fwha1 c.47.1.1 (A:428-544) T  33.2     7.7 0.00049   14.7   1.1   57  400-463    59-117 (117)
 46 d1vb5a_ c.124.1.5 (A:) Putativ  29.9      12  0.0008   13.3   1.9   54  371-433   134-187 (274)
 47 d1u0ta_ e.52.1.1 (A:) Inorgani  25.0      15 0.00097   12.8   4.8   43  423-465   247-294 (302)
 48 d1xova2 c.56.5.6 (A:1-180) End  23.1      16  0.0011   12.5   5.0   24   24-47     22-45  (180)
 49 d1bvyf_ c.23.5.1 (F:) FMN-bind  21.4      18  0.0011   12.3   4.3   30  370-399    82-116 (152)
 50 d1lxna_ d.58.48.1 (A:) Hypothe  20.9      18  0.0012   12.2   9.0   81  372-464     4-99  (99)
 51 d2dlxa1 c.47.1.24 (A:1-147) UB  20.4      19  0.0012   12.2   5.6   66  389-464    69-135 (147)
 52 d1w85b2 c.48.1.2 (B:193-324) P  20.4      19  0.0012   12.2   4.7   14  452-465   118-131 (132)
 53 d1z5ye1 c.47.1.10 (E:49-184) T  20.1      19  0.0012   12.1   5.7   79  371-463    49-127 (136)
 54 d2fi9a1 c.103.1.1 (A:11-128) H  20.1      18  0.0012   12.3   1.0   45  371-416    58-102 (118)
 55 d1djqa2 c.3.1.1 (A:490-645) Tr  20.0      19  0.0012   12.1   6.0   77  373-451    41-126 (156)

No 1  
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=100.00  E-value=0  Score=339.16  Aligned_cols=324  Identities=26%  Similarity=0.440  Sum_probs=266.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCC
Q ss_conf             65401578521158267999999999999999973992500654332677631156310234343320201112213554
Q T0589             9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKS   88 (465)
Q Consensus         9 ~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~   88 (465)
                      .|++|+||||+|++|..+..+++|++.|+++|.+|||++|.||+|++.++|....+              ....+++|+|
T Consensus         1 ~~~~~~~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g--------------~~~~~~~~~f   66 (327)
T d1wu7a2           1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG--------------EELLQQTYSF   66 (327)
T ss_dssp             CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSC--------------TTGGGGSCEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCC--------------HHHHHHHHHH
T ss_conf             98777999986689999999999999999999985994767776351754255673--------------5688877654


Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             47888557854776099999999987515774515775240026677777530000000013525752178999999999
Q T0589            89 GDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAII  168 (465)
Q Consensus        89 ~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~  168 (465)
                      .|++|+.++||||+|++++|+++++. ..+.|.|+||+|+|||+++++.+|.|||+|+++|+++.+  +..+|+|++.++
T Consensus        67 ~D~~g~~l~LRpD~T~~iar~~~~~~-~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~--~~~~D~Eii~l~  143 (327)
T d1wu7a2          67 VDKGGREVTLIPEATPSTVRMVTSRK-DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD--SPEADAEVIALA  143 (327)
T ss_dssp             ECTTSCEEEECSCSHHHHHHHHTTCT-TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC--SHHHHHHHHHHH
T ss_pred             HCCCCHHHCCCCCCCCHHHHHHHHHH-HCCCCCEEECCCCCEECCCCCCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHH
T ss_conf             03541011010123521566766521-013652122247410024344687231123234333774--128789999999


Q ss_pred             HHHHHHCCC-CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             999997399-8259997276889999987245103799999998633005857899888743889889999986412578
Q T0589           169 TEIFEAVNI-GDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDG  247 (465)
Q Consensus       169 ~e~~~~lgl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (465)
                      .+++..+++ ..+++.++|..++..++..++..+.  .......+...+...+.+...+............+.++.....
T Consensus       144 ~~~l~~~~~~~~~~i~l~~~~i~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  221 (327)
T d1wu7a2         144 SSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDP--FSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTR  221 (327)
T ss_dssp             HHHHHHTTTTTSEEEEEEEHHHHHHHHHTTCSSCH--HHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCB
T ss_pred             HHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99875026542100012326669999986545677--8888887888763220023344333356677765321013420


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             88899999998874311125678888889999999986089866323143340674001253788633365544440047
Q T0589           248 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSG  327 (465)
Q Consensus       248 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~g  327 (465)
                      ........       .   ......+..+..+...+...+..  .+.+|++++++++||||++|+.+.+. +...++++|
T Consensus       222 ~l~~~~~~-------~---~~~~~~~~~l~~l~~~l~~~~~~--~i~~D~~~~r~~~YYtGivFe~~~~~-~~~~~i~~G  288 (327)
T d1wu7a2         222 GIDEMARI-------T---GKSSEEIARMAAVEDLLASYGVK--NVRYDFSIVRGLSYYTGIVFEAYDRS-GQFRAILGG  288 (327)
T ss_dssp             CHHHHHHH-------T---TCCCHHHHHHHHHHHHHHHTTCC--CCEECTTCCTTTTTCSSEEEEEEETT-SSCSCSSEE
T ss_pred             HHHHHHHH-------H---CHHHHHHHHHHHHHHHHHHCCCC--CEEECCCCCCCCCCCCCEEEEEEECC-CCCCEEEEC
T ss_conf             45678764-------0---10126799999988788760876--34676423788777688189999668-971605436


Q ss_pred             CCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCC
Q ss_conf             7543210320136534485220035789998742024
Q T0589           328 GRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGIL  364 (465)
Q Consensus       328 gryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  364 (465)
                      ||||+|++.+++..+||||++++.+++..+.......
T Consensus       289 GRYD~L~~~f~g~~~pAvGfsl~~~~l~~~l~~~~~~  325 (327)
T d1wu7a2         289 GRYDNLASLMSGESVPAVGFGMGDAVISLLLKRENVQ  325 (327)
T ss_dssp             EECTTHHHHHHSCCCCEEEEEEEHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCC
T ss_conf             5426889864999888688983299999999864999


No 2  
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=100.00  E-value=3.8e-44  Score=313.13  Aligned_cols=316  Identities=16%  Similarity=0.258  Sum_probs=245.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf             01578521158267999999999999999973992500654332677631156310234343320201112213554478
Q T0589            12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT   91 (465)
Q Consensus        12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~   91 (465)
                      |.-|+|+.|+.|..++.+++|++.++++|.+|||++|.||+|++.++|..+++..++           ...+++|+|.|+
T Consensus         1 ~~lP~g~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~-----------~~~~~~~~~~d~   69 (318)
T d1z7ma1           1 YLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKT-----------FNQEKMFQFIKH   69 (318)
T ss_dssp             CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSC-----------CCTTSCCEEECT
T ss_pred             CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCC-----------CCCCCEEEEECC
T ss_conf             989983233198899999999999999999869979888866527776403788653-----------443402673269


Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             88557854776099999999987515774515775240026677777530000000013525752178999999999999
Q T0589            92 GSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEI  171 (465)
Q Consensus        92 ~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~  171 (465)
                      +|+.++||||+|++++|+++++.  ...|.|+||+|+|||++.++.+|+|||+|+++|+|+.+  +..+|+|++.++.++
T Consensus        70 ~g~~l~LRpD~T~~iaR~~~~~~--~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~--~~~ad~Eii~l~~e~  145 (318)
T d1z7ma1          70 EGQSITLRYDFTLPLVRLYSQIK--DSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGES--ADKSELEILSLALQV  145 (318)
T ss_dssp             TCCEEEECCCSHHHHHHHHHTCC--SCCCEEEEEEEECCCCCC-------CCEEEEEEEESSC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHC--CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHEECCCCC--HHHHHHHHHHHHHHH
T ss_conf             86379752333461999999730--36870021456216874533554202333320002121--056777789999999


Q ss_pred             HHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf             99739982599972768899999872451037999999986330058578998887438898899999864125788889
Q T0589           172 FEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDD  251 (465)
Q Consensus       172 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (465)
                      ++.+|++.+++.+||.+++..+++..+.....   +..++.   +.........................+ ........
T Consensus       146 l~~lgi~~~~i~i~~~~l~~~ll~~~~~~~e~---~~~~l~---~k~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~  218 (318)
T d1z7ma1         146 IEQLGLNKTVFEIGSAKFFQRLCQLADGSTEL---LTELLL---KKDLSGLNAFIEKNNFSKELRGLLKEI-FITNELSR  218 (318)
T ss_dssp             HHHHTCSSEEEEEEEHHHHHHHHHHTTTCHHH---HHHHHH---TTCHHHHHHHHTTSCCCHHHHHHHHHH-TTCCCHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf             99853214402110245788888753201234---578887---640111034555413688999988620-00003678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99999988743111256788888899999999860898663231433406740012537886333655444400477543
Q T0589           252 VLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYE  331 (465)
Q Consensus       252 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggryd  331 (465)
                      ......        .......++.+..+..++..++.. ..+.+|++++++++||||++|+.+.++.+  .++++|||||
T Consensus       219 ~~~~~~--------~~~~~~~~~~l~~l~~~~~~~~~~-~~i~~d~~~~r~~~YYtG~vF~~~~~~~~--~~i~~GGRYD  287 (318)
T d1z7ma1         219 LENLVT--------NTKDDVLISSFDQLKEFSEKLSMI-KPIIIDLGMVPKMDYYTDLMFKAYSSAAN--QPILSGGRYD  287 (318)
T ss_dssp             HHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTT-SCCEECTTCCCSSTTCCSEEEEEEETTEE--EEEEEEEECH
T ss_pred             HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCEEEEEEECCCC--CEEEECCCHH
T ss_conf             998764--------213788887677776689886002-32266810158975778808999978988--8478894457


Q ss_pred             CCHHHHCCCCCCEEECCCHHHHHHHHHHHH
Q ss_conf             210320136534485220035789998742
Q T0589           332 ELVGTFIGEKMPGVGISIGLTRLISRLLKA  361 (465)
Q Consensus       332 ~li~~~~~~~~~~v~~~~~~~~~~~~~~~~  361 (465)
                      +|++.++ ..+||||++++.+++..++...
T Consensus       288 ~L~~~~g-~~~~avGfsi~ld~i~~~l~~~  316 (318)
T d1z7ma1         288 QLLSNFQ-EEAFAIGFCCHMDTILKALERQ  316 (318)
T ss_dssp             HHHHTSS-SCCCCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHCC-CCCCEEEEEEEHHHHHHHHHHC
T ss_conf             8898509-9987799995699999999866


No 3  
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=9.8e-45  Score=317.04  Aligned_cols=321  Identities=21%  Similarity=0.302  Sum_probs=238.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf             01578521158267999999999999999973992500654332677631156310234343320201112213554478
Q T0589            12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT   91 (465)
Q Consensus        12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~   91 (465)
                      .++++||+|++|..++.+++|++.|+++|.+|||++|+||+|++.++|.++.+...+           ...+.+|.+.|.
T Consensus         2 ~~~~kG~rD~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~-----------~~~~~~~~~~d~   70 (324)
T d1h4vb2           2 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATD-----------IVRKEMFTFQDR   70 (324)
T ss_dssp             CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC-----------------CCSCEEECT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCHH-----------HHHHHHHHHHCC
T ss_conf             989999857899999999999999999999869967447764318776134687136-----------778777543025


Q ss_pred             CCCEEEECCCCHHHHHHHHHHH-HHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             8855785477609999999998-751577451577524002667777753000000001352575217899999999999
Q T0589            92 GSEARALKFDQTVPLAAYIARH-LNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE  170 (465)
Q Consensus        92 ~g~~~~Lrpd~t~~~~r~~~~~-~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e  170 (465)
                      +|+.++||||+|++++|.++.. ....+.|.|+||+|++||+++++.+|.|||+|+++|+++.+  +..+|+|++.++.+
T Consensus        71 ~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~--~~~ad~Eii~l~~~  148 (324)
T d1h4vb2          71 GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE--NPILDAEAVVLLYE  148 (324)
T ss_dssp             TSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCC--CHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHEEECCCCCCCCCCCCCCCEECCCCCCCCCCC--CHHHHHHHHHHHHH
T ss_conf             7730024664331788899876665301065604447320367656887330023112346789--86999999999999


Q ss_pred             HHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf             99973998259997276889999987245103799999998633005857899888743889889999986412578888
Q T0589           171 IFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVD  250 (465)
Q Consensus       171 ~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (465)
                      ++..+++....+.++|..+...........+..       ...............+....           .........
T Consensus       149 ~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~  210 (324)
T d1h4vb2         149 CLKELGLRRLKVKLSSVGDPEDRARYNAYLREV-------LSPHREALSEDSKERLEENP-----------MRILDSKSE  210 (324)
T ss_dssp             HHHHTTCCSCEEEEEECCCHHHHHHHHHHHHHH-------HGGGGGGSCHHHHHHHHHCG-----------GGGGGCCCH
T ss_pred             HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_conf             999841457542641058626778888889998-------88888765378899998624-----------454443457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             99999998874311125678888889999999986089866323143340674001253788633365544440047754
Q T0589           251 DVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRY  330 (465)
Q Consensus       251 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggry  330 (465)
                      .....++.....................+......+++   .+.+|++++++++||||++|+.+.+..+...++++||||
T Consensus       211 ~~~~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---~i~iD~~~~rg~~YYtG~vFe~~~~~~g~~~~i~~GGRY  287 (324)
T d1h4vb2         211 RDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSV---PYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRY  287 (324)
T ss_dssp             HHHHHHHHHCCCCGGGGCCHHHHHHHHHHHHHHHHTTC---CEEECTTCCCCSTTCEEEEEEEEC------CEEEEEEEC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCE---EEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf             78999986238458888748888778887777763324---899864225687561681899997898865715217763


Q ss_pred             CCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             321032013653448522003578999874202455
Q T0589           331 EELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNT  366 (465)
Q Consensus       331 d~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  366 (465)
                      |+|+..+++..+||||++++.+++..++...+...|
T Consensus       288 D~L~~~f~~~~~pAvGfsi~ld~l~~~l~~~g~~~p  323 (324)
T d1h4vb2         288 DGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLP  323 (324)
T ss_dssp             TTHHHHTTCCCCCEEEEEEEHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCCC
T ss_conf             789986499999758999539999999996599999


No 4  
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=7.3e-44  Score=311.22  Aligned_cols=315  Identities=22%  Similarity=0.334  Sum_probs=232.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC
Q ss_conf             40157852115826799999999999999997399250065433267763115631023434332020111221355447
Q T0589            11 NFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD   90 (465)
Q Consensus        11 ~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d   90 (465)
                      ++|+|+||+|++|..++.+++|++.|+++|++|||++|.||+|++.++|.+..+..           .....+.++.+.|
T Consensus         1 ~~~~~~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~-----------~~~~~~~~~~~~d   69 (322)
T d1kmma2           1 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEV-----------TDVVEKEMYTFED   69 (322)
T ss_dssp             CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTT-----------SHHHHHTCEEEEC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCC-----------HHHHHHHHHHHHH
T ss_conf             99999998878999999999999999999998799476776545288862315762-----------1566777754431


Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             88855785477609999999998751577451577524002667777753000000001352575217899999999999
Q T0589            91 TGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITE  170 (465)
Q Consensus        91 ~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e  170 (465)
                      .+|+.++||||+|++++|+++++..+...|.|+||+|++||++.++.+|.|||+|+++|+++.+  +..+|+|++.++.+
T Consensus        70 ~~g~~l~Lr~D~T~~iaR~~~~~~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG~~--~~~ad~Eii~l~~~  147 (322)
T d1kmma2          70 RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ--GPDIDAELIMLTAR  147 (322)
T ss_dssp             TTSCEEEECSCSHHHHHHHHHHTTCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC--SHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHH
T ss_conf             1453113463223205688875103210035675315422357888886214566557776366--30657999999999


Q ss_pred             HHHHCCCCCEEE-EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
Q ss_conf             999739982599-9727688999998724510379999999863300585789988874388988999998641257888
Q T0589           171 IFEAVNIGDFVI-RINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSV  249 (465)
Q Consensus       171 ~~~~lgl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (465)
                      ++..+|+....+ ..++.........       ....+.+.+..............        ........+.......
T Consensus       148 ~l~~lgl~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~l~~~~~~~--------~~~~~~~~l~~~~~~~  212 (322)
T d1kmma2         148 WWRALGISEHVTLELNSIGSLEARAN-------YRDALVAFLEQHKEKLDEDCKRR--------MYTNPLRVLDSKNPEV  212 (322)
T ss_dssp             HHHHHTCGGGCEEEEEECCCHHHHHH-------HHHHHHHHHHHC-----------------------------------
T ss_pred             HHHHCCCCCEEEEECCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCCCHHH
T ss_conf             99861887505871354000878888-------89999999998887663999998--------8651566653036478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf             89999999887431112567888888999999998608986632314334067400125378863336554444004775
Q T0589           250 DDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGR  329 (465)
Q Consensus       250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggr  329 (465)
                      ......+...     ...........+..+...+...++   .+.+|++++++++||||++|+.+....+...++++|||
T Consensus       213 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~l~~~~i---~~~id~~~~r~~~YYtGivFe~~~~~~g~~~~i~~GGR  284 (322)
T d1kmma2         213 QALLNDAPAL-----GDYLDEESREHFAGLCKLLESAGI---AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGR  284 (322)
T ss_dssp             --------CG-----GGTCCHHHHHHHHHHHHHHHHHTC---CEEECTTCCCSSSCCCSEEEEEECTTCSSSSEEEEEEE
T ss_pred             HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHCCE---EEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEECCCC
T ss_conf             9999887631-----014556778899888887651330---01333133568878788289999678897573522654


Q ss_pred             CCCCHHHHCCCCCCEEECCCHHHHHHHHHHHH
Q ss_conf             43210320136534485220035789998742
Q T0589           330 YEELVGTFIGEKMPGVGISIGLTRLISRLLKA  361 (465)
Q Consensus       330 yd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~  361 (465)
                      ||+|++.|++..+||||++++.+++..++...
T Consensus       285 YD~L~~~f~g~~~pAvGfsi~ld~l~~~l~~~  316 (322)
T d1kmma2         285 YDGLVEQLGGRATPAVGFAMGLERLVLLVQAV  316 (322)
T ss_dssp             CTTHHHHTTSCCCCEEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf             27899863899997578995299999999865


No 5  
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00  E-value=2.1e-42  Score=301.40  Aligned_cols=316  Identities=22%  Similarity=0.355  Sum_probs=232.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf             01578521158267999999999999999973992500654332677631156310234343320201112213554478
Q T0589            12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT   91 (465)
Q Consensus        12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~   91 (465)
                      ++.|+||+|++|..++.+++|++.+.++|.+|||++|+||+|++.++|....++.           .....+.+|.+.|+
T Consensus         2 ~~lP~G~rD~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~-----------~~~~~~~~~~~~d~   70 (325)
T d1qe0a2           2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDS-----------TDVVQKEMYTFKDK   70 (325)
T ss_dssp             CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC----------------------CCEEECHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCC-----------HHHHHHHHHHHHCC
T ss_conf             8889988377999999999999999999998699686676421188750536870-----------46788887654201


Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHH--HCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             885578547760999999999875--157745157752400266777775300000000135257521789999999999
Q T0589            92 GSEARALKFDQTVPLAAYIARHLN--DLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIIT  169 (465)
Q Consensus        92 ~g~~~~Lrpd~t~~~~r~~~~~~~--~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~  169 (465)
                      +|..++||||.|.+++|.++....  ..+.|+|+||+|+|||+++++.+|.|||+|+++|+++.+.  ..+|+|++.++.
T Consensus        71 ~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG~~~--~~ad~Eii~l~~  148 (325)
T d1qe0a2          71 GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAEN--PSVDAEVLAMVM  148 (325)
T ss_dssp             HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCC--HHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHEECCEEEECCCCCCCCCEEEECCEEECCCCC--CHHHHHHHHHHH
T ss_conf             111122454434307899986035433566066514621464155557862122002035427867--399998789999


Q ss_pred             HHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
Q ss_conf             99997399825999727688999998724510379999999863300585789988874388988999998641257888
Q T0589           170 EIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSV  249 (465)
Q Consensus       170 e~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (465)
                      +++..+|++++.+.+||..++............       ..............   ......+.        .......
T Consensus       149 ~~l~~~g~~~~~i~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~  210 (325)
T d1qe0a2         149 HIYQSFGLKHLKLVINSVGDMASRKEYNEALVK-------HFEPVIHEFCSDCQ---SRLHTDPM--------RILDCKV  210 (325)
T ss_dssp             HHHHHTTCCCEEEEEEECCCHHHHHHHHHHHHH-------HHGGGGGGSCHHHH---HTTTTCGG--------GGC----
T ss_pred             HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHCCHH--------HHHHHHC
T ss_conf             999862776742355454408888888888888-------78888888777766---55300256--------6654313


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCC---CCCCCC
Q ss_conf             89999999887431112567888888999999998608986632314334067400125378863336554---444004
Q T0589           250 DDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEA---LGSICS  326 (465)
Q Consensus       250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~---~~~i~~  326 (465)
                      ......++.+....  ..........+..+...+...++   .+.+|++++++++||||++|+.+....+.   ..++++
T Consensus       211 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~---~~~~D~s~~rg~~YYTGivFe~~~~~~~~~g~~~~i~~  285 (325)
T d1qe0a2         211 DRDKEAIKTAPRIT--DFLNEESKAYYEQVKAYLDDLGI---PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCG  285 (325)
T ss_dssp             --------CCCCGG--GCCCTTHHHHHHHHHHHHHHHTC---CCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEE
T ss_pred             CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEC
T ss_conf             02478997513303--34556679999999998875232---22106554568778678089999657777776473540


Q ss_pred             CCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHHHHC
Q ss_conf             7754321032013653448522003578999874202
Q T0589           327 GGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGI  363 (465)
Q Consensus       327 ggryd~li~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  363 (465)
                      |||||+|++.|++...||||++++.+++..++.....
T Consensus       286 GGRYD~L~~~f~~~~~pAvGfsi~ld~L~~~l~~~~~  322 (325)
T d1qe0a2         286 GGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGI  322 (325)
T ss_dssp             EEEEESHHHHTTCCCCEEEEEEEEHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCC
T ss_conf             5357779997089999868999659999999997499


No 6  
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=2.6e-34  Score=246.92  Aligned_cols=265  Identities=20%  Similarity=0.181  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf             99999999999973992500654332677631156310234343320201112213554478885578547760999999
Q T0589            30 LYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAY  109 (465)
Q Consensus        30 ~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~  109 (465)
                      +++.+++ +.+.++||++|.||++++.+...  +                      ..|.|++|+.++||||+|++++|+
T Consensus         7 ek~~sf~-~~~~~~Gy~~i~tP~~E~~e~~~--~----------------------~~F~D~~g~~l~LRpD~T~~iaR~   61 (275)
T d1usya_           7 EKVFSFY-SKATKKGFSPFFVPALEKAEEPA--G----------------------NFFLDRKGNLFSIREDFTKTVLNH   61 (275)
T ss_dssp             HHHHHHH-HHHHHTTCEECCCCSEEECSSCC--S----------------------SCEEETTSCEEEECCCHHHHHHHH
T ss_pred             HHHHHHH-HHHHHCCCCEEECCCCCCCCCCC--C----------------------CEEECCCCCEEEECCCCCHHHHHH
T ss_conf             9999999-99998599643567632230212--6----------------------653859999998789773999999


Q ss_pred             HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf             99987515774515775240026677777530000000013525752178999999999999997399825999727688
Q T0589           110 IARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKV  189 (465)
Q Consensus       110 ~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~  189 (465)
                      ++++.  .+.|.|+||+|+|||++.+   +.|||+|+++|+++.+  +..+|+|++.++.++++.+|++++++.+||.++
T Consensus        62 ~~~~~--~~~p~k~~Y~g~VfR~~~~---~~re~~Q~G~EiiG~~--~~~aD~Evi~l~~~~l~~lgi~~~~i~l~~~~i  134 (275)
T d1usya_          62 RKRYS--PDSQIKVWYADFVYRYSGS---DLVAEYQLGLEKVPRN--SLDDSLEVLEIIVESASEFFEGPVIVEIGHTGV  134 (275)
T ss_dssp             HTTCT--TCCCEEEECCEEEEEEETT---EEEEEEEEEEEEESCC--SHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTH
T ss_pred             HHHCC--CCCCEEEEEEEEEEEECCC---CCCCEEECCCEEECHH--HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCH
T ss_conf             99759--9998033577208982798---6454255581453224--578899999999999986230354777557105


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999872451037999999986330058578998887438898899999864125788889999999887431112567
Q T0589           190 LTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQF  269 (465)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  269 (465)
                      +..+++.++.+  ....+...++..   ....++........+..............+..           +.+......
T Consensus       135 ~~~ll~~l~~~--~~~~l~~~l~~k---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~  198 (275)
T d1usya_         135 YEDLLKEIPKD--LHEKVLNLIDTK---NLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSP-----------EHLKTMDLP  198 (275)
T ss_dssp             HHHHHTTSCGG--GHHHHHHHHHTT---CHHHHHHHHHHTCCCCTHHHHHHHHHHHCCSG-----------GGGGTSCCC
T ss_pred             HHHHHHHCCCH--HHHHHHHHHHHC---CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHH
T ss_conf             87876522505--789999998842---66659998765599977888776320004686-----------666515778


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCC
Q ss_conf             88888899999999860898663231433406740012537886333655444400477543210320136534485220
Q T0589           270 NLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISI  349 (465)
Q Consensus       270 ~~~~~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~yytg~vfe~~~~~~~~~~~i~~ggryd~li~~~~~~~~~~v~~~~  349 (465)
                      ....+++..+...+...+. ...+.+|++++|+++||||++|+.+.++.+  .++++|||||.+.+       .|+|+++
T Consensus       199 ~~~~~~L~~~~~~l~~~~~-~~~i~~D~~~~rgldYYtGivFe~~~~~~~--~~I~~GGRYD~l~e-------~~~G~si  268 (275)
T d1usya_         199 LSVREDLLSASSFLQEKFP-TVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVNGE-------KGVGGSI  268 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHCS-SSEEEECCCCGGGGGTCSSEEEEEEETTTT--EEEEEEEEEEETTE-------EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEEECCCC--CEEEECCCCCCCCC-------EEEEEEE
T ss_conf             8889999999999986387-860998265257976669859999999988--96876141168778-------7046899


Q ss_pred             HHH
Q ss_conf             035
Q T0589           350 GLT  352 (465)
Q Consensus       350 ~~~  352 (465)
                      +.+
T Consensus       269 ~ld  271 (275)
T d1usya_         269 FLE  271 (275)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             740


No 7  
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.94  E-value=2.1e-26  Score=193.62  Aligned_cols=170  Identities=14%  Similarity=0.080  Sum_probs=125.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCEECCCCCCCHHHHHHCCCCCH--HHHHHHHHCCH---HHHH-----
Q ss_conf             78521158267999999999999999--973992500654332677631156310--23434332020---1112-----
Q T0589            15 PSGFPEFLPSEKRLELYLLDTIRRVY--ESYGFTPIETPAVERLEVLQAKGNQGD--NIIYGLEPILP---PNRQ-----   82 (465)
Q Consensus        15 ~~G~~d~~P~g~~~~~~i~~~~~~~~--~~~G~~ei~~P~i~~~~~~~~sg~~~~--~~~~~~~~~~~---~~~~-----   82 (465)
                      .+|+|||||+|++++++|++.||+.|  .+.|++||+||+|+|.+||++|||.+.  |.++.+..+..   ....     
T Consensus        28 ~~G~y~ygP~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~  107 (331)
T d1b76a2          28 LQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQ  107 (331)
T ss_dssp             CTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCC
T ss_conf             33675258728999999999999998753488599866655886783447520245772244224556668510211135


Q ss_pred             HHCCCCCCCCCCEEEECCCCHHHHHH-HHHHHHHHCCC-CCCEEEECCCCCCCC---CCCCCCCEEEEEEEEEEECCCHH
Q ss_conf             21355447888557854776099999-99998751577-451577524002667---77775300000000135257521
Q T0589            83 AEKDKSGDTGSEARALKFDQTVPLAA-YIARHLNDLTF-PFARYQMDVVFRGER---AKDGRFRQFRQCDIDVVGREKLS  157 (465)
Q Consensus        83 ~~~~~~~d~~g~~~~Lrpd~t~~~~r-~~~~~~~~~~~-~~~~~~~g~~fR~~~---~~~~r~ref~q~~~~~f~~~~~~  157 (465)
                      ..+....+ .+....|+|+++.++.- +......++++ |++++|+|++||+|.   .|+.|+|||+|+++|+|+.+.+.
T Consensus       108 ~~~~~~~~-~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~~~~q~  186 (331)
T d1b76a2         108 DLRGPRGG-RGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGED  186 (331)
T ss_dssp             EECSSSCC-GGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEECGGGH
T ss_pred             CCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf             32242123-67751004753355899998677535443560322205232366555544332003111003420487520


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             7899999999999999739982599972
Q T0589           158 LLYDAQMPAIITEIFEAVNIGDFVIRIN  185 (465)
Q Consensus       158 ~~~~~e~i~~~~e~~~~lgl~~~~~~~~  185 (465)
                      ....+..+..+.+.+..+|+....++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~g~~~~~lr~~  214 (331)
T d1b76a2         187 EYWHRYWVEERLKWWQEMGLSRENLVPY  214 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHEEEE
T ss_conf             6799999999999999862562213642


No 8  
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=99.93  E-value=1.5e-25  Score=187.92  Aligned_cols=174  Identities=16%  Similarity=0.165  Sum_probs=145.4

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH
Q ss_conf             96321024654015-78521158267999999999999999973992500654332677631156310234343320201
Q T0589             1 SNAMAKNDKINFST-PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP   79 (465)
Q Consensus         1 ~~~~~~~~~~~~~~-~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~   79 (465)
                      .++|.|.+++++.. ++|++.|+|.|++++++|++++++++.+.||++|.||+|.+.++|++|||            ++.
T Consensus         9 ~el~~k~~L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~------------~~~   76 (268)
T d1nj8a3           9 SDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAE------------HIK   76 (268)
T ss_dssp             HHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCS------------SSG
T ss_pred             HHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCC------------CCC
T ss_conf             99999769823489998637889018999999999999999984986982023331576603278------------755


Q ss_pred             HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC---CCCCCCEEE-EEEEEE
Q ss_conf             1122135544----788855785477609999999998751577-4515775240026677---777530000-000013
Q T0589            80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA---KDGRFRQFR-QCDIDV  150 (465)
Q Consensus        80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~---~~~r~ref~-q~~~~~  150 (465)
                      +..++|+...    |+.++.++|+|++|+.++.+++....++++ |+++|+++++||+|.+   |+.|.|||+ |.+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~  156 (268)
T d1nj8a3          77 GFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHT  156 (268)
T ss_dssp             GGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCHHHHHEEEEECCCCCCCCCCCCCCCEEEEEEEEECHHCE
T ss_conf             66530147740321220244302457773057765431234121214775116311035555666615788764200033


Q ss_pred             EECCCHHHHHHHHHH-HHHHHHHHHCCCCCEEEEECC
Q ss_conf             525752178999999-999999997399825999727
Q T0589           151 VGREKLSLLYDAQMP-AIITEIFEAVNIGDFVIRINN  186 (465)
Q Consensus       151 f~~~~~~~~~~~e~i-~~~~e~~~~lgl~~~~~~~~~  186 (465)
                      |+.+.+.+...++.+ ....++|..++++........
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~~if~~l~l~~~~~~~~~  193 (268)
T d1nj8a3         157 AHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPE  193 (268)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECT
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             1366430267888889999999975175424312455


No 9  
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=99.93  E-value=2.9e-25  Score=185.94  Aligned_cols=160  Identities=13%  Similarity=0.125  Sum_probs=143.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf             57852115826799999999999999997399250065433267763115631023434332020111221355447888
Q T0589            14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGS   93 (465)
Q Consensus        14 ~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g   93 (465)
                      ...|++.|+|.|++++++|++++++++.+.||+||.+|+|.+.++|++|||             ++.+.++|+...+. +
T Consensus        18 ~~~G~~~~lP~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~-------------~~~~~~~~~~~~~~-~   83 (291)
T d1qf6a4          18 EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGH-------------WDNYKDAMFTTSSE-N   83 (291)
T ss_dssp             TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSH-------------HHHHGGGCEEEEET-T
T ss_pred             CCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCH-------------HHHCCCHHCCCCCC-C
T ss_conf             778544873389999999999999999985998997664564667755210-------------54146301034333-1


Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             55785477609999999998751577-4515775240026677----777530000000013525752178999999999
Q T0589            94 EARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA----KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAII  168 (465)
Q Consensus        94 ~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~----~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~  168 (465)
                      +.++|+|++++.++.+++....++++ |+++||++++||+|..    |+.|+|||+|.|+++|+.+.+......+++..+
T Consensus        84 ~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~~~~  163 (291)
T d1qf6a4          84 REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLV  163 (291)
T ss_dssp             EEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCHHHHHHHHCCCCCHHHCCEEEEECCEEEECCCCCCCCCCCCCCCCEECCCEEEECCHHHHHHHHHHHHHH
T ss_conf             22111466767899998721530432372575403354125666654666664643322056736465699999999999


Q ss_pred             HHHHHHCCCCCEEEEECCH
Q ss_conf             9999973998259997276
Q T0589           169 TEIFEAVNIGDFVIRINNR  187 (465)
Q Consensus       169 ~e~~~~lgl~~~~~~~~~~  187 (465)
                      .+++..+|++...+.++.+
T Consensus       164 ~~i~~~lGl~~~~v~~s~~  182 (291)
T d1qf6a4         164 YDMYSTFGFEKIVVKLSTR  182 (291)
T ss_dssp             HHHHGGGTCCCCEEEEECC
T ss_pred             HHHHHHCCCCEEEEEEECC
T ss_conf             9999975996499998668


No 10 
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.92  E-value=4e-25  Score=185.05  Aligned_cols=173  Identities=14%  Similarity=0.099  Sum_probs=133.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HCCCCEECCCCCCCHHHHHHCCCCC--HHHHHHHHHCCHHHHHHHCCC
Q ss_conf             015785211582679999999999999999--7399250065433267763115631--023434332020111221355
Q T0589            12 FSTPSGFPEFLPSEKRLELYLLDTIRRVYE--SYGFTPIETPAVERLEVLQAKGNQG--DNIIYGLEPILPPNRQAEKDK   87 (465)
Q Consensus        12 ~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~--~~G~~ei~~P~i~~~~~~~~sg~~~--~~~~~~~~~~~~~~~~~~~~~   87 (465)
                      |.-.+|||||||+|+++++||++.||+.|.  +.+..+|++|+|+|.+||++|||++  +|++++|..+...++++.+..
T Consensus        25 YGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv~~F~D~mv~c~~~~~~~RaD~l~e  104 (394)
T d1atia2          25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLK  104 (394)
T ss_dssp             GTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEEC--------------
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHH
T ss_conf             26710155768427999999999999987540477777513344898886206787887644202677775320226776


Q ss_pred             C----------------------------------------------------------------------CCCCCCEEE
Q ss_conf             4----------------------------------------------------------------------478885578
Q T0589            88 S----------------------------------------------------------------------GDTGSEARA   97 (465)
Q Consensus        88 ~----------------------------------------------------------------------~d~~g~~~~   97 (465)
                      -                                                                      ...++....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t~~~~FNLMF~T~iGp~~~~~~~~y  184 (394)
T d1atia2         105 EQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAY  184 (394)
T ss_dssp             ------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEE
T ss_conf             65565543321134555666889999875476866525876178899889867767500221000123233456563367


Q ss_pred             ECCCCHHHHHHHHHHHHH--HCCCCCCEEEECCCCCCC---CCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             547760999999999875--157745157752400266---777775300000000135257521789999999999999
Q T0589            98 LKFDQTVPLAAYIARHLN--DLTFPFARYQMDVVFRGE---RAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIF  172 (465)
Q Consensus        98 Lrpd~t~~~~r~~~~~~~--~~~~~~~~~~~g~~fR~~---~~~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~~~e~~  172 (465)
                      |||+..+++.-.+.+.+.  ..+.|+.++|||+.||||   +.+..|+|||+|++++.|+.+..........+......+
T Consensus       185 LRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~yw~~~~~~f~  264 (394)
T d1atia2         185 LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWW  264 (394)
T ss_dssp             ECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             77013069999799999971567880112432211466376557756332212026899817851577888999999999


Q ss_pred             HHCCCCCEEEEE
Q ss_conf             973998259997
Q T0589           173 EAVNIGDFVIRI  184 (465)
Q Consensus       173 ~~lgl~~~~~~~  184 (465)
                      ..+|+..-.++.
T Consensus       265 ~~lGi~~~~lrf  276 (394)
T d1atia2         265 QEMGLSRENLVP  276 (394)
T ss_dssp             HHTTCCGGGEEE
T ss_pred             HHHCCCCCCEEE
T ss_conf             983688333367


No 11 
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=99.91  E-value=1.1e-24  Score=181.98  Aligned_cols=162  Identities=15%  Similarity=0.195  Sum_probs=143.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCC-CC
Q ss_conf             57852115826799999999999999997399250065433267763115631023434332020111221355447-88
Q T0589            14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD-TG   92 (465)
Q Consensus        14 ~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~   92 (465)
                      .-.|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|+.|||             ++...++||+... .+
T Consensus        18 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~-------------~~~~~~~~~~~~~~~~   84 (291)
T d1nyra4          18 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGH-------------WDHYQEDMFPPMQLDE   84 (291)
T ss_dssp             TEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTH-------------HHHCTTSSCCCEEETT
T ss_pred             CCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCC-------------CCCCCCCEEEEEECCC
T ss_conf             058505883239999999999999999986998997760235667523145-------------6533540499862254


Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             855785477609999999998751577-4515775240026677----77753000000001352575217899999999
Q T0589            93 SEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA----KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI  167 (465)
Q Consensus        93 g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~----~~~r~ref~q~~~~~f~~~~~~~~~~~e~i~~  167 (465)
                      ++.++|+|++++.++.++.....++++ |+++|+++++||+|.+    |+.|+|+|+|.+.++|+.++++...-.+++..
T Consensus        85 ~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~~~~~  164 (291)
T d1nyra4          85 TESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNM  164 (291)
T ss_dssp             TEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHCEECCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEEEEHEEECCCCCCHHHHHHHHHH
T ss_conf             43201355634578775545863422243678613322416877665542003656631110005875419999999999


Q ss_pred             HHHHHHHCCCCCEEEEECCHH
Q ss_conf             999999739982599972768
Q T0589           168 ITEIFEAVNIGDFVIRINNRK  188 (465)
Q Consensus       168 ~~e~~~~lgl~~~~~~~~~~~  188 (465)
                      +.++++.||++...+.++..+
T Consensus       165 ~~~i~~~lGl~~~~v~~~~~d  185 (291)
T d1nyra4         165 IIDVYKDFGFEDYSFRLSYRD  185 (291)
T ss_dssp             HHHHHHHTTCCCEEEEEEECC
T ss_pred             HHHHHHHCCCCCEEEEEECCC
T ss_conf             999862117673699984388


No 12 
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=99.91  E-value=6.9e-24  Score=176.70  Aligned_cols=170  Identities=15%  Similarity=0.139  Sum_probs=140.9

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH-HHHHCCCCCHHHHHHHHHCCHH
Q ss_conf             6321024654015-7852115826799999999999999997399250065433267-7631156310234343320201
Q T0589             2 NAMAKNDKINFST-PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLE-VLQAKGNQGDNIIYGLEPILPP   79 (465)
Q Consensus         2 ~~~~~~~~~~~~~-~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~-~~~~sg~~~~~~~~~~~~~~~~   79 (465)
                      ++|.|+++++++. .+|++.|+|.|+++++.|+++++++.. .||++|.||++.+.+ +|+.|||             +.
T Consensus         8 el~~k~~lid~~~~~~G~~~~lP~G~~i~~~i~~~~~~~~~-~G~~ev~~P~l~~~~~l~~~sgh-------------~~   73 (265)
T d1nj1a3           8 NILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILD-RDHEEVLFPLLVPEDELAKEAIH-------------VK   73 (265)
T ss_dssp             HHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTTSHHH-------------HH
T ss_pred             HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEHHHHHHHHHHHHHCCCC-------------CC
T ss_conf             99997488434789984299851099999999999999998-16822224553105666530256-------------56


Q ss_pred             HHHHHCCCCC----CCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCC---CCCCCCEEEE-EEEEE
Q ss_conf             1122135544----788855785477609999999998751577-4515775240026677---7775300000-00013
Q T0589            80 NRQAEKDKSG----DTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERA---KDGRFRQFRQ-CDIDV  150 (465)
Q Consensus        80 ~~~~~~~~~~----d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~---~~~r~ref~q-~~~~~  150 (465)
                      .+.++||+..    +..++.++|+|++|+.++.+++....++++ |+++||++++||+|.+   |+.|+|||+| .+.++
T Consensus        74 ~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~  153 (265)
T d1nj1a3          74 GFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHT  153 (265)
T ss_dssp             HTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEE
T ss_pred             CCCCCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCEEEEEEEEECCCEE
T ss_conf             64655102421675554105875213565357764105424444335887530112135365757778999998433506


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             5257521789999-9999999999739982599972
Q T0589           151 VGREKLSLLYDAQ-MPAIITEIFEAVNIGDFVIRIN  185 (465)
Q Consensus       151 f~~~~~~~~~~~e-~i~~~~e~~~~lgl~~~~~~~~  185 (465)
                      |..+.+....+++ ++....+++..++++.......
T Consensus       154 ~~~~~~~~~~e~~~~~~~~~~~~~~l~l~~~~~~~~  189 (265)
T d1nj1a3         154 IHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRP  189 (265)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             517778888876566899999996439751688706


No 13 
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.88  E-value=3e-22  Score=165.67  Aligned_cols=163  Identities=12%  Similarity=0.064  Sum_probs=137.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHH
Q ss_conf             63210246540157852115826799999999999999997399250065433267763115631023434332020111
Q T0589             2 NAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNR   81 (465)
Q Consensus         2 ~~~~~~~~~~~~~~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~   81 (465)
                      ++|.|++++++.+++|++.|+|.|++++++|++++++.+.++||++|.||++.+.++|+++|+            ++..+
T Consensus        16 ~l~~~~~l~d~~~~~G~~~~lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~------------~~~~~   83 (272)
T d1hc7a2          16 EVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAE------------HVEGF   83 (272)
T ss_dssp             HHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------------------C
T ss_pred             HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCC------------CHHHC
T ss_conf             999974884247999717888469999999999999999875976884033435577642256------------21213


Q ss_pred             HHHCCCCCCCC----CCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCCCC--CCCCCEEEEEEEEEEECC
Q ss_conf             22135544788----855785477609999999998751577-45157752400266777--775300000000135257
Q T0589            82 QAEKDKSGDTG----SEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGERAK--DGRFRQFRQCDIDVVGRE  154 (465)
Q Consensus        82 ~~~~~~~~d~~----g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~~~--~~r~ref~q~~~~~f~~~  154 (465)
                      .++|+.+.+..    ++.++|+|++++.++.++.....++++ |+++|+++++||+|..+  +.|.|+|.|.+++.|+.+
T Consensus        84 ~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~  163 (272)
T d1hc7a2          84 SPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT  163 (272)
T ss_dssp             CTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS
T ss_pred             CCCEEEEECCCCCCCCCHHHCCCCCCCCEEEHHHCEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHCC
T ss_conf             65225642244344441122024544403520103205532111256521332256642122001489999824533100


Q ss_pred             CHHHHHHHHHHH-HHHHHHHHCC
Q ss_conf             521789999999-9999999739
Q T0589           155 KLSLLYDAQMPA-IITEIFEAVN  176 (465)
Q Consensus       155 ~~~~~~~~e~i~-~~~e~~~~lg  176 (465)
                      .+....+++... .....+..+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~  186 (272)
T d1hc7a2         164 REEAEEEVRRMLSIYARLAREYA  186 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             10103677778888888999840


No 14 
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.88  E-value=9.3e-22  Score=162.34  Aligned_cols=100  Identities=16%  Similarity=0.336  Sum_probs=97.4

Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC
Q ss_conf             55556870289984687899999999999987698599972898977899999965897999986023438828999858
Q T0589           365 NTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ  444 (465)
Q Consensus       365 ~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~  444 (465)
                      ||.|++|+||+|+|++++...+|.+|++.||+.||+|.+|+++.++|+|+++|+..|+||+|+||++++++|+|+||+|+
T Consensus         1 ~P~~laP~Qv~iipi~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~ki~~a~~~g~p~~iiiG~~E~~~~~V~ir~~~   80 (110)
T d1qf6a1           1 FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRR   80 (110)
T ss_dssp             CCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESS
T ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECC
T ss_conf             97975871489996168888888999999988532554447765000789999986998999977517768989999888


Q ss_pred             CCCEEEECHHHHHHHHHHHC
Q ss_conf             88658714899999999963
Q T0589           445 SGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       445 t~~q~~v~~~el~~~l~~~l  464 (465)
                      +++|..++++++++.|++.+
T Consensus        81 ~~~q~~i~~~e~i~~l~~~i  100 (110)
T d1qf6a1          81 GKDLGSMDVNEVIEKLQQEI  100 (110)
T ss_dssp             SCEEEEECHHHHHHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHHH
T ss_conf             99567765999999999999


No 15 
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.87  E-value=1.2e-21  Score=161.52  Aligned_cols=105  Identities=14%  Similarity=0.237  Sum_probs=98.4

Q ss_pred             HHHCCCCCCCCCCEEEEEECCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEE
Q ss_conf             42024555568702899846878-99999999999987698599972898977899999965897999986023438828
Q T0589           360 KAGILNTLPPTPAQVVVVNMQDE-LMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKS  438 (465)
Q Consensus       360 ~~~~~~~~~~~p~~V~v~~~~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~v  438 (465)
                      +....||.|++|+||.|+|++++ ..++|.+|++.||++||+|++|+++.++|+|+++|+..|+||+|+||++++++|+|
T Consensus         2 ~~~G~~P~~lAP~qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~~g~k~~~a~~~g~p~~iiiG~~E~~~~~v   81 (113)
T d1nyra1           2 ETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQV   81 (113)
T ss_dssp             HHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEE
T ss_pred             CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCEE
T ss_conf             87887985128964899986717875567888877633104124115201002678889984960999984360008999


Q ss_pred             EEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf             99985888658714899999999963
Q T0589           439 SLKDLQSGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       439 tir~r~t~~q~~v~~~el~~~l~~~l  464 (465)
                      +||+|++++|..|+++|+++.|++.|
T Consensus        82 ~vr~~~~~~q~~v~~~e~i~~l~~ei  107 (113)
T d1nyra1          82 NVRQYGSQDQETVEKDEFIWNLVDEI  107 (113)
T ss_dssp             EEEETTSSCCCEEEHHHHHHHHHHHH
T ss_pred             EEEECCCCCEEEEEHHHHHHHHHHHH
T ss_conf             99997899578872999999999999


No 16 
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=99.87  E-value=7.3e-22  Score=163.04  Aligned_cols=103  Identities=20%  Similarity=0.356  Sum_probs=97.4

Q ss_pred             HCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCC
Q ss_conf             0245555687028998468-----78999999999999876985999728989778999999658979999860234388
Q T0589           362 GILNTLPPTPAQVVVVNMQ-----DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQ  436 (465)
Q Consensus       362 ~~~~~~~~~p~~V~v~~~~-----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~  436 (465)
                      ++.||.++||+||.|+|+.     +++.++|.+|++.|+++||+|.+|+++.++|+|+++|++.|+||+|+||++++++|
T Consensus         2 Gl~~P~~iAP~qV~Iipi~~~~~~e~~~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K~~~a~~~giP~~iiiG~ke~~~~   81 (127)
T d1nj1a1           2 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKG   81 (127)
T ss_dssp             SEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHHHHTTT
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHEEECCCCCCCC
T ss_conf             76378112893699997358886499999999999999865885698751202779999987632753035530020067


Q ss_pred             EEEEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf             2899985888658714899999999963
Q T0589           437 KSSLKDLQSGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       437 ~vtir~r~t~~q~~v~~~el~~~l~~~l  464 (465)
                      +|+||+|+|++|..+++++++++|+++|
T Consensus        82 ~v~l~~r~~~~~~~v~~~~~~~~i~~ll  109 (127)
T d1nj1a1          82 AAVISRRDTGEKVTADLQGIEETLRELM  109 (127)
T ss_dssp             EEEEEESSSCCEEEEETTTHHHHHHHHH
T ss_pred             EEEEEECCCCCEEEEEHHHHHHHHHHHH
T ss_conf             7999984799577864999999999999


No 17 
>d1evla1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1nyra1 d1nj1a1
Probab=99.86  E-value=4.7e-21  Score=157.63  Aligned_cols=100  Identities=16%  Similarity=0.336  Sum_probs=97.3

Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC
Q ss_conf             55556870289984687899999999999987698599972898977899999965897999986023438828999858
Q T0589           365 NTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ  444 (465)
Q Consensus       365 ~~~~~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~  444 (465)
                      ||.|++|+||+|+|++++..+++.+++++||++||+|++|+++.++|+|+++|++.|+||+|+||++++++|+|+||+|+
T Consensus         1 ~P~~laP~qv~ii~i~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~k~a~~~g~p~~iiiG~~E~~~~~v~ik~~~   80 (110)
T d1evla1           1 FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRR   80 (110)
T ss_dssp             CCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETT
T ss_pred             CCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECC
T ss_conf             98762870689972470356899999986402214577403554048899999974897899977500038858999859


Q ss_pred             CCCEEEECHHHHHHHHHHHC
Q ss_conf             88658714899999999963
Q T0589           445 SGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       445 t~~q~~v~~~el~~~l~~~l  464 (465)
                      +++|..+++++++++|++.|
T Consensus        81 ~~~q~~i~~~e~i~~i~~~l  100 (110)
T d1evla1          81 GKDLGSMDVNEVIEKLQQEI  100 (110)
T ss_dssp             SCEEEEEEHHHHHHHHHHHH
T ss_pred             CCCEEEECHHHHHHHHHHHH
T ss_conf             98336415899999999998


No 18 
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.85  E-value=8.3e-21  Score=155.96  Aligned_cols=98  Identities=20%  Similarity=0.369  Sum_probs=92.7

Q ss_pred             CCCCCEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHC---------
Q ss_conf             5687028998468---7899999999999987698599972898977899999965897999986023438---------
Q T0589           368 PPTPAQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAA---------  435 (465)
Q Consensus       368 ~~~p~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~---------  435 (465)
                      .+||+||.|+|+.   ++..++|.+|++.|+++|++|.+|+++.++|+||++|+++|+||+|+||++++++         
T Consensus         1 ~lAP~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~~~~~gvP~~iiIG~kel~~g~~~~~~~~   80 (111)
T d1atia1           1 QLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLK   80 (111)
T ss_dssp             GGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTT
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCC
T ss_conf             98986799997568977899999998754324530457646989887999999871998999997378652634334567


Q ss_pred             CEEEEEECCCCCEEEECHHHHHHHHHHHCC
Q ss_conf             828999858886587148999999999639
Q T0589           436 QKSSLKDLQSGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       436 ~~vtir~r~t~~q~~v~~~el~~~l~~~l~  465 (465)
                      ||||||+|+|++|..|+++|++++|+++|+
T Consensus        81 ntV~ir~Rd~~~~~~v~i~e~~~~l~~~l~  110 (111)
T d1atia1          81 DTVTVRDRDTMEQIRLHVDELEGFLRERLR  110 (111)
T ss_dssp             TEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred             CEEEEEECCCCCEEEEEHHHHHHHHHHHHC
T ss_conf             569999868882678889999999999708


No 19 
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.84  E-value=5.9e-21  Score=156.93  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=95.9

Q ss_pred             HCCCCCCCCCCEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEE---ECCCCCHHHHHHHHHHCCCCEEEEECHHHHHC
Q ss_conf             0245555687028998468---78999999999999876985999---72898977899999965897999986023438
Q T0589           362 GILNTLPPTPAQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVIT---NFEKRQLGKQFQAADKQGIRFCVIIGADEAAA  435 (465)
Q Consensus       362 ~~~~~~~~~p~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~---d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~  435 (465)
                      .+.+|+++||+||.|+|.+   +++.+.|.+|++.|++.||++..   |+++.++|+|+++|+++|+||+|+||++++++
T Consensus         3 vL~lpp~lAP~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~~~lg~k~~~a~~~giP~~iiiG~~e~~~   82 (127)
T d1g5ha1           3 VLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLEN   82 (127)
T ss_dssp             EECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred             EEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             78768244894699994688987899999999999998427413334127776899999999970996799995875526


Q ss_pred             CEEEEEECCCCCEEEECHHHHHHHHHHHCC
Q ss_conf             828999858886587148999999999639
Q T0589           436 QKSSLKDLQSGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       436 ~~vtir~r~t~~q~~v~~~el~~~l~~~l~  465 (465)
                      |+|+||+|+|++|..|++++++++|++.|+
T Consensus        83 ~~V~ir~r~t~~q~~i~i~~l~~~l~~~l~  112 (127)
T d1g5ha1          83 GLIQLRSRDTTMKEMMHISKLRDFLVKYLA  112 (127)
T ss_dssp             CEEEEEETTTCCEEEEETTSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             779999988984378889999999999998


No 20 
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=99.84  E-value=1.1e-20  Score=155.02  Aligned_cols=103  Identities=20%  Similarity=0.337  Sum_probs=95.4

Q ss_pred             HCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCC
Q ss_conf             0245555687028998468-----78999999999999876985999728989778999999658979999860234388
Q T0589           362 GILNTLPPTPAQVVVVNMQ-----DELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQ  436 (465)
Q Consensus       362 ~~~~~~~~~p~~V~v~~~~-----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~  436 (465)
                      ++.||.|+||+||.|+|+.     +.+.+++.+|++.|+ +|++|.+|+++.++|+|+++|+++|+||+|+||++++++|
T Consensus         2 Glv~P~~lAP~qv~Iipi~~~~~~~~~~~~a~~l~~~L~-~~i~v~~D~~~~~~g~k~~~a~~~giP~~iiiG~ke~~~~   80 (126)
T d1nj8a1           2 GLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLK-GKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENK   80 (126)
T ss_dssp             BCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHH-TTSCEEECCSCSCHHHHHHHHHHTTCSEEEEECHHHHHTT
T ss_pred             CCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf             788854148845999963688732899999999998726-5305885065123889999998887778875051000077


Q ss_pred             EEEEEECCCCCEEEECHHHHHHHHHHHCC
Q ss_conf             28999858886587148999999999639
Q T0589           437 KSSLKDLQSGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       437 ~vtir~r~t~~q~~v~~~el~~~l~~~l~  465 (465)
                      +|+||+|++++|..|++++++++|++.|+
T Consensus        81 ~v~lr~R~~~~~~~v~~~~l~~~i~~~l~  109 (126)
T d1nj8a1          81 KITLFRRDTMEKFQVDETQLMEVVEKTLN  109 (126)
T ss_dssp             EEEEEETTTCCEEEEETTSHHHHHHHHHH
T ss_pred             EEEEEECCCCCEEEECHHHHHHHHHHHHH
T ss_conf             89999848995578729999999999999


No 21 
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81  E-value=1.4e-20  Score=154.44  Aligned_cols=171  Identities=12%  Similarity=-0.034  Sum_probs=128.6

Q ss_pred             CCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCC------
Q ss_conf             78521-15826799999999999999997399250065433267763115631023434332020111221355------
Q T0589            15 PSGFP-EFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDK------   87 (465)
Q Consensus        15 ~~G~~-d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~------   87 (465)
                      ..|++ ||||+|++++++|++.|++.|.. ...+|.+|-.++.++|++|||...+...++..+...........      
T Consensus        26 ~~g~~~dyGP~G~~Lk~ni~~~w~~~~v~-~~~~v~~~d~~~~~~~~~sgh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (290)
T d1g5ha2          26 LSGCHARFGPLGVELRKNLASQWWSSMVV-FREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAF  104 (290)
T ss_dssp             HHCCSCCBCHHHHHHHHHHHHHHHHHHTT-TCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf             13465302886799999999999999873-36855621312556677763334233001344100235664035544241


Q ss_pred             CCCCCCCEEEECCCCHHHHHHHHHHHH-HHC-CCCCCEEEECCCCCCCC------CCCCCCCEEEEEEEEEEECCCHHHH
Q ss_conf             447888557854776099999999987-515-77451577524002667------7777530000000013525752178
Q T0589            88 SGDTGSEARALKFDQTVPLAAYIARHL-NDL-TFPFARYQMDVVFRGER------AKDGRFRQFRQCDIDVVGREKLSLL  159 (465)
Q Consensus        88 ~~d~~g~~~~Lrpd~t~~~~r~~~~~~-~~~-~~~~~~~~~g~~fR~~~------~~~~r~ref~q~~~~~f~~~~~~~~  159 (465)
                      .....+....||||+++++.-.+.+.+ .++ +.|++++|+|++||+|.      .|+.|+|||+|+++++|+.++++..
T Consensus       105 ~~~~~~~~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~  184 (290)
T d1g5ha2         105 LENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQ  184 (290)
T ss_dssp             HHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHH
T ss_pred             EECCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHH
T ss_conf             20126644410665662689998988763247899379986443345555677641330324768413578967750678


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             999999999999997399825999727
Q T0589           160 YDAQMPAIITEIFEAVNIGDFVIRINN  186 (465)
Q Consensus       160 ~~~e~i~~~~e~~~~lgl~~~~~~~~~  186 (465)
                      .-...+..+.+.+..||++...+++.+
T Consensus       185 ~~~~~~~~~~~~~~~lGi~~~~~~~~~  211 (290)
T d1g5ha2         185 WLDFWLRHRLLWWRKFAMSPSNFSSAD  211 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCSSGGGEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHEEECC
T ss_conf             999999999999997398866665224


No 22 
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}
Probab=99.80  E-value=3.6e-19  Score=144.92  Aligned_cols=103  Identities=23%  Similarity=0.369  Sum_probs=93.0

Q ss_pred             HCCCCCCCCCCEEEEEECC-----HHHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEECHHHHHC
Q ss_conf             0245555687028998468-----7899999999999987698599972898-977899999965897999986023438
Q T0589           362 GILNTLPPTPAQVVVVNMQ-----DELMPTYLKVSQQLRQAGLNVITNFEKR-QLGKQFQAADKQGIRFCVIIGADEAAA  435 (465)
Q Consensus       362 ~~~~~~~~~p~~V~v~~~~-----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~-sig~k~~~ad~~G~p~~i~ig~~~~~~  435 (465)
                      ++.||.|++|+||.|+|++     ....++|.+|++.|++.||+|.+||++. ++|+|++.|+.+|+||+|+||++++++
T Consensus         2 Gl~~P~~lAP~qv~Iipi~~~~~~~~~~~~a~~i~~~L~~~girv~~Dd~~~~~~g~K~~~a~~~giP~~iiiG~~e~~~   81 (127)
T d1hc7a1           2 GLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEG   81 (127)
T ss_dssp             BCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHT
T ss_pred             CCCCCHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHCC
T ss_conf             78884203892699998037702679999999999999971980578516520188999999861488067745255507


Q ss_pred             CEEEEEECCCCCEEEECHHHHHHHHHHHCC
Q ss_conf             828999858886587148999999999639
Q T0589           436 QKSSLKDLQSGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       436 ~~vtir~r~t~~q~~v~~~el~~~l~~~l~  465 (465)
                      |+|+||.|+++ +..+++++++++|+++|+
T Consensus        82 ~~v~v~~R~~~-k~~i~~~~~~~~i~~~l~  110 (127)
T d1hc7a1          82 GQAVLASRLGG-KETLPLAALPEALPGKLD  110 (127)
T ss_dssp             TEEEEEETTSC-CCEEEGGGHHHHHHHHHH
T ss_pred             CEEEEEECCCC-CCEEEHHHHHHHHHHHHH
T ss_conf             66999951577-743509999999999999


No 23 
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.77  E-value=2.2e-18  Score=139.64  Aligned_cols=95  Identities=23%  Similarity=0.361  Sum_probs=92.2

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE
Q ss_conf             70289984687899999999999987698599972898977899999965897999986023438828999858886587
Q T0589           371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE  450 (465)
Q Consensus       371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~  450 (465)
                      ..+|+|+++++...+++.+|+..||++||+|++|++++++++++++|+..|+||+|+||++++++|+|+||+|++++|..
T Consensus         3 ~~~V~i~~~g~~~~~~~~~l~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~~~~~~~iiiG~~E~~~~~v~ik~l~~~~q~~   82 (97)
T d1wu7a1           3 KKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQEN   82 (97)
T ss_dssp             SCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEE
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCEEE
T ss_conf             76399999087999999999999998899899987888278999999741797588417733447852899999997899


Q ss_pred             ECHHHHHHHHHHHCC
Q ss_conf             148999999999639
Q T0589           451 VALADLAEEIKRRLT  465 (465)
Q Consensus       451 v~~~el~~~l~~~l~  465 (465)
                      |++++++++|.+++|
T Consensus        83 v~~~~l~~~l~~~~s   97 (97)
T d1wu7a1          83 VGLDSVVEHLISQAT   97 (97)
T ss_dssp             EEGGGHHHHHHHCCC
T ss_pred             EEHHHHHHHHHHCCC
T ss_conf             769999999996049


No 24 
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.76  E-value=5.9e-18  Score=136.74  Aligned_cols=94  Identities=31%  Similarity=0.489  Sum_probs=91.4

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCE
Q ss_conf             702899846878999999999999876--985999728989778999999658979999860234388289998588865
Q T0589           371 PAQVVVVNMQDELMPTYLKVSQQLRQA--GLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQ  448 (465)
Q Consensus       371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~--gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q  448 (465)
                      +++|+|++++++...+|.+++++||++  |++|++|+++.++++++++|++.|+||+|+||++++++|+|+||+|+|++|
T Consensus         3 ~vdv~vi~~~~~~~~~a~~la~~LR~~~~gi~v~~~~~~~~l~kq~k~A~~~~~~~~iiiG~~E~~~~~v~vk~l~~~~q   82 (99)
T d1kmma1           3 VVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQ   82 (99)
T ss_dssp             SCSEEEECCSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSEEEECCHHHHHTTEEEEEETTTCCE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCEEEEEECCCCCE
T ss_conf             88799997787999999999999984499829999689987879999997847874421181112146799999999977


Q ss_pred             EEECHHHHHHHHHHHC
Q ss_conf             8714899999999963
Q T0589           449 VEVALADLAEEIKRRL  464 (465)
Q Consensus       449 ~~v~~~el~~~l~~~l  464 (465)
                      ..|++++++++|+++|
T Consensus        83 ~~v~~~el~~~l~~~L   98 (99)
T d1kmma1          83 TAVAQDSVAAHLRTLL   98 (99)
T ss_dssp             EEEEHHHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHH
T ss_conf             9976999999999974


No 25 
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.74  E-value=1e-17  Score=135.10  Aligned_cols=93  Identities=26%  Similarity=0.477  Sum_probs=89.6

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEE
Q ss_conf             87028998468789999999999998769859997289897789999996589799998602343882899985888658
Q T0589           370 TPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQV  449 (465)
Q Consensus       370 ~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~  449 (465)
                      ..++|+|+|++++...++.+|++.||++|++|++|+++.++++++++|++.|+||+|+||.+++++|+|+||+|++++|.
T Consensus         3 ~~~dv~ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~~~~~~~iiiG~~E~~~~~v~vk~l~~~~q~   82 (95)
T d1qe0a1           3 ENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESE   82 (95)
T ss_dssp             CCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEE
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEE
T ss_conf             78849999948789999999999999879918832778998999999875489999997651433797999999999789


Q ss_pred             EECHHHHHHHHHH
Q ss_conf             7148999999999
Q T0589           450 EVALADLAEEIKR  462 (465)
Q Consensus       450 ~v~~~el~~~l~~  462 (465)
                      .+++++++++|++
T Consensus        83 ~i~~~el~~~l~k   95 (95)
T d1qe0a1          83 TIELDALVEYFKK   95 (95)
T ss_dssp             EECTTHHHHHHHC
T ss_pred             EEEHHHHHHHHCC
T ss_conf             9759999999629


No 26 
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.72  E-value=3.8e-17  Score=131.32  Aligned_cols=93  Identities=24%  Similarity=0.373  Sum_probs=89.6

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE
Q ss_conf             70289984687899999999999987698599972898977899999965897999986023438828999858886587
Q T0589           371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE  450 (465)
Q Consensus       371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~  450 (465)
                      ..+|+|+|++++...++.+|++.||+ |+++++|++++++++++++|++.|+||+|+||.+++++++|+||+|+|++|..
T Consensus         3 ~pdv~iv~~~~~~~~~a~~i~~~LR~-~~~~~~~~~~~~l~kq~k~A~~~~~~~~iiiG~~E~~~~~v~vK~l~~~~q~~   81 (96)
T d1h4vb1           3 GPDLYLIPLTEEAVAEAFYLAEALRP-RLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVR   81 (96)
T ss_dssp             CCSEEEEESSHHHHHHHHHHHHHHTT-TSCEEECSSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCEEEEECCCCCEEE
T ss_conf             98899997697999999999999975-96699987999989999999984999799756146755937999999995799


Q ss_pred             ECHHHHHHHHHHHC
Q ss_conf             14899999999963
Q T0589           451 VALADLAEEIKRRL  464 (465)
Q Consensus       451 v~~~el~~~l~~~l  464 (465)
                      ++++|++++|+++|
T Consensus        82 v~~~el~~~l~~~l   95 (96)
T d1h4vb1          82 LSREEVPGYLLQAL   95 (96)
T ss_dssp             EEGGGHHHHHHHHC
T ss_pred             EEHHHHHHHHHHHH
T ss_conf             87999999999961


No 27 
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=99.50  E-value=1.7e-13  Score=106.71  Aligned_cols=170  Identities=18%  Similarity=0.135  Sum_probs=134.0

Q ss_pred             CCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHH
Q ss_conf             21024654015----78521158267999999999999999973992500654332677631156310234343320201
Q T0589             4 MAKNDKINFST----PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPP   79 (465)
Q Consensus         4 ~~~~~~~~~~~----~~G~~d~~P~g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~   79 (465)
                      +.+.+.++...    -+|||-+.+.++++.+.|.+++.+...+.||++|.+|.+...++++.+|+             ++
T Consensus        30 ~~~l~l~d~~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~-------------~p   96 (311)
T d1seta2          30 MEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGH-------------FP   96 (311)
T ss_dssp             HHHHTCBCTTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTC-------------TT
T ss_pred             HHHCCCCCHHHCEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHCCC-------------CC
T ss_conf             97769966000022047537997889999999999998763103434886301111101432035-------------30


Q ss_pred             HHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCC-------CCCCCCCEEEEEEEEEE
Q ss_conf             1122135544788855785477609999999998751577-451577524002667-------77775300000000135
Q T0589            80 NRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTF-PFARYQMDVVFRGER-------AKDGRFRQFRQCDIDVV  151 (465)
Q Consensus        80 ~~~~~~~~~~d~~g~~~~Lrpd~t~~~~r~~~~~~~~~~~-~~~~~~~g~~fR~~~-------~~~~r~ref~q~~~~~f  151 (465)
                      ...+++|...+   ..++|.|+.+++++.++.....++++ |.|+++.+++||+|.       .|+.|+++|+..+..++
T Consensus        97 ~f~~~~y~~~~---~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~  173 (311)
T d1seta2          97 AYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVL  173 (311)
T ss_dssp             TTGGGSCBBTT---SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEE
T ss_pred             CCCCCCCCCCC---CCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCHHHHHHCCCCHHHHHEE
T ss_conf             01221100133---200203655204555565653323204505776335311321134543120001003323122012


Q ss_pred             ECCCHHH--HHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf             2575217--8999999999999997399825999727688
Q T0589           152 GREKLSL--LYDAQMPAIITEIFEAVNIGDFVIRINNRKV  189 (465)
Q Consensus       152 ~~~~~~~--~~~~e~i~~~~e~~~~lgl~~~~~~~~~~~~  189 (465)
                      +.+.+..  ....+.+..+.++++.|+++...+.+...++
T Consensus       174 ~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~dl  213 (311)
T d1seta2         174 TEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDM  213 (311)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC
T ss_conf             0244311023899999999998776178600103367787


No 28 
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=98.70  E-value=3.1e-07  Score=64.52  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCC-CCCCCCCEEEECCCCH
Q ss_conf             799999999999999997399250065433267763115631023434332020111221355-4478885578547760
Q T0589            25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDK-SGDTGSEARALKFDQT  103 (465)
Q Consensus        25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~~~~Lrpd~t  103 (465)
                      =.+++..|.+.+|+.|...||.||+||+|.+...   .|.                  ...+. .....|..+.|+---.
T Consensus        31 ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~---~g~------------------~~~~~~~~~~~~~~~~L~~Spe   89 (346)
T d1c0aa3          31 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---EGA------------------RDYLVPSRVHKGKFYALPQSPQ   89 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SSS------------------CCCEEECSSSTTCEEECCSCSH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCC------------------CCCCCCCCCCCCCCCCCCCCHH
T ss_conf             9999999999999999988989987985477787---645------------------4442121137996306771879


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH
Q ss_conf             999999999875157745157752400266777775300000000135257521789999
Q T0589           104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ  163 (465)
Q Consensus       104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e  163 (465)
                      ...-++++      ...-++|+||++||++..+..|..||||.++|.-..+........|
T Consensus        90 l~lk~ll~------~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E  143 (346)
T d1c0aa3          90 LFKQLLMM------SGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVME  143 (346)
T ss_dssp             HHHHHHHH------TTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHH
T ss_pred             HHHHHHHH------CCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             99999863------4888548971240212368613567656313434553767589999


No 29 
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=98.55  E-value=6.7e-07  Score=62.29  Aligned_cols=113  Identities=19%  Similarity=0.159  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH
Q ss_conf             79999999999999999739925006543326776311563102343433202011122135544788855785477609
Q T0589            25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV  104 (465)
Q Consensus        25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~  104 (465)
                      =.+++..|...+|+.|.+.||.||+||+|.....   .|+.                 .......+..+....|+.--..
T Consensus        39 ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~---eg~~-----------------~~~~~~~~~~~~~~yL~~Spel   98 (356)
T d1l0wa3          39 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---EGAR-----------------DFLVPYRHEPGLFYALPQSPQL   98 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SSSC-----------------CCEEECTTSTTEEEECCSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCCC-----------------CCHHHHHCCCCCCCCCCCCHHH
T ss_conf             9999999999999999888989998981246777---6443-----------------2002221132011177728567


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH
Q ss_conf             99999999875157745157752400266777775300000000135257521789999
Q T0589           105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ  163 (465)
Q Consensus       105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e  163 (465)
                      ..-+..+    +  ..-++|+++++||++..+..|.-||+|.++|.-..+........|
T Consensus        99 ~lk~ll~----~--g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E  151 (356)
T d1l0wa3          99 FKQMLMV----A--GLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNE  151 (356)
T ss_dssp             HHHHHHH----T--TCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHH
T ss_pred             HHHHHHH----C--CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7777523----2--368679982123522268754045668877666788878999999


No 30 
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=98.48  E-value=1e-06  Score=61.00  Aligned_cols=112  Identities=14%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCC-CCCCCCEEEECCCCH
Q ss_conf             7999999999999999973992500654332677631156310234343320201112213554-478885578547760
Q T0589            25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKS-GDTGSEARALKFDQT  103 (465)
Q Consensus        25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~g~~~~Lrpd~t  103 (465)
                      -.+++..|...+|+.|...||.||+||+|....    +|+...                 .|.. .+-.+....|..--.
T Consensus        22 ~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~----~~~~~~-----------------~f~~~~~~~~~~~yL~~Spq   80 (342)
T d1e1oa2          22 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP----GGASAR-----------------PFITHHNALDLDMYLRIAPE   80 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC----CSSCCC-----------------CCEEEETTTTEEEEECSCSH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCCCC-----------------CEEECCCCCCCCCCCCHHHH
T ss_conf             999999999999999988889999898764327----987886-----------------42314667775120023267


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHH
Q ss_conf             999999999875157745157752400266777775300000000135257521789999
Q T0589           104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQ  163 (465)
Q Consensus       104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~~~~~~~~~e  163 (465)
                      ...-++.+    +  ..-++||++++||.|..+..|..||||.++|.-..+..+.....|
T Consensus        81 l~~k~~l~----~--g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e  134 (342)
T d1e1oa2          81 LYLKRLVV----G--GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTE  134 (342)
T ss_dssp             HHHHHHHH----H--TCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHH
T ss_pred             HHHHHHHH----H--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99898766----2--246213420002455431111078887889987511666777656


No 31 
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.43  E-value=2.6e-06  Score=58.34  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHH
Q ss_conf             99999999999999997399250065433267763115631023434332020111221355447888557854776099
Q T0589            26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVP  105 (465)
Q Consensus        26 ~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~~  105 (465)
                      .+++.+|...+|+.|.+.||.||+||+|.+..    +++..                 +.|.. ...+....|+---...
T Consensus        44 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~----~eg~~-----------------~~f~~-~~~~~~~yL~~Spel~  101 (353)
T d1eova2          44 FRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEGGS-----------------SVFEV-TYFKGKAYLAQSPQFN  101 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSSSS-----------------CCCEE-EETTEEEEECSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCHH-----------------CCCCC-EEECCCCEECCCHHHH
T ss_conf             99999999999999988899998897317778----85010-----------------45412-1007750221321134


Q ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEECC
Q ss_conf             999999987515774515775240026677777-5300000000135257
Q T0589           106 LAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGRE  154 (465)
Q Consensus       106 ~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~~~  154 (465)
                      .-+..+    .  ..-++|||+++||+|..+.. +..||||.++|.-..+
T Consensus       102 lk~ll~----~--g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d  145 (353)
T d1eova2         102 KQQLIV----A--DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE  145 (353)
T ss_dssp             HHHHHH----T--TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSS
T ss_pred             HHHHHH----C--CCCCCEEECHHHHCCCCCCCCCCCHHCCCCCCCCCCH
T ss_conf             566653----1--6566335303323032212114501024430112114


No 32 
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=98.41  E-value=2.3e-06  Score=58.64  Aligned_cols=108  Identities=13%  Similarity=0.063  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHH-HHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCH
Q ss_conf             7999999999999999973992500654332677-631156310234343320201112213554478885578547760
Q T0589            25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEV-LQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQT  103 (465)
Q Consensus        25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~-~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t  103 (465)
                      =.+++..|...+|+.|.+.||.||+||++.+.-. ....+..               .....+ -.+-.|+...|+.--.
T Consensus        13 il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~yL~~SPe   76 (293)
T d1nnha_          13 TLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG---------------EGMEPA-EVEIYGVKMRLTHSMI   76 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC---------------CCCCCC-EEEETTEEEEECSCSH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCC---------------CCCCCC-CCCCCCCEEECCCCHH
T ss_conf             999999999999999998899997587345667777776556---------------766465-3567896564466863


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC---CCCCCEEEEEEEEEEECC
Q ss_conf             999999999875157745157752400266777---775300000000135257
Q T0589           104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAK---DGRFRQFRQCDIDVVGRE  154 (465)
Q Consensus       104 ~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~---~~r~ref~q~~~~~f~~~  154 (465)
                      ...-+..+    .  ...++||||++||+|...   ..+.-||+|.++|.-..+
T Consensus        77 l~lk~lla----~--g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d  124 (293)
T d1nnha_          77 LHKQLAIA----M--GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK  124 (293)
T ss_dssp             HHHHHHHH----T--TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC
T ss_pred             HHHHHHHH----H--CCCCCEEECHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf             64799997----2--233210310233047556777756156651111233230


No 33 
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=98.34  E-value=2.4e-06  Score=58.60  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH
Q ss_conf             79999999999999999739925006543326776311563102343433202011122135544788855785477609
Q T0589            25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV  104 (465)
Q Consensus        25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~  104 (465)
                      =.+++..|...+|+.|.+.||.||+||+|.....   .|+.                  +.+.+ ...++.+.|+---..
T Consensus        33 ~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~---~~~~------------------~~f~~-~~~~~~~yL~~SpE~   90 (335)
T d1b8aa2          33 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EGGT------------------ELFPM-KYFEEDAFLAESPQL   90 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCC---SSSS------------------SCCEE-EETTEEEEECSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CHHH------------------HHCCC-CCCCCCCCCCCCHHH
T ss_conf             9999999999999999988999987986576577---2133------------------20121-122344212368578


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEEEEEEEE
Q ss_conf             9999999987515774515775240026677777-53000000001352
Q T0589           105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVG  152 (465)
Q Consensus       105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~-r~ref~q~~~~~f~  152 (465)
                      ..-+.    +.+  ...++|||+++||+|..+.. +..||+|.+.+.-.
T Consensus        91 ~lkrl----l~~--g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~  133 (335)
T d1b8aa2          91 YKEIM----MAS--GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF  133 (335)
T ss_dssp             HHHHG----GGT--TCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEES
T ss_pred             HHHHH----HHH--HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             77777----764--06668783302352224543102588766678888


No 34 
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=98.08  E-value=2.4e-05  Score=51.76  Aligned_cols=101  Identities=18%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCHH
Q ss_conf             79999999999999999739925006543326776311563102343433202011122135544788855785477609
Q T0589            25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV  104 (465)
Q Consensus        25 g~~~~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~Lrpd~t~  104 (465)
                      -.+++.+|...+|+.|...||.||+||++.+...   .|+.                  ..+. .+..+....|+.-...
T Consensus        14 ~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~---e~~~------------------~~f~-~~~~~~~~~L~~Spel   71 (304)
T d1n9wa2          14 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA---EGGS------------------GLFG-VDYFEKRAYLAQSPQL   71 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCC--------------------------------------------------CHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCCC------------------CEEC-CCCCCCCHHCCCCHHH
T ss_conf             9999999999999999888999987986478888---9978------------------5078-7655530101453888


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEEEECC
Q ss_conf             999999998751577451577524002667777-75300000000135257
Q T0589           105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKD-GRFRQFRQCDIDVVGRE  154 (465)
Q Consensus       105 ~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~-~r~ref~q~~~~~f~~~  154 (465)
                       +.+..+..      .-++|||+++||++..+. .+..||+|.+++.-...
T Consensus        72 -~k~ll~~g------~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~  115 (304)
T d1n9wa2          72 -YKQIMVGV------FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA  115 (304)
T ss_dssp             -HHHHHHHH------HSEEEEEEEC-------------CCEEEEEEEESCS
T ss_pred             -HHHHHHCC------CCCCEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             -88875213------354210143312453555446517899999874213


No 35 
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=98.00  E-value=0.00016  Score=46.27  Aligned_cols=113  Identities=19%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEECCCCCCCH-HHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCC-----------CCEE
Q ss_conf             9999999999999739925006543326-776311563102343433202011122135544788-----------8557
Q T0589            29 ELYLLDTIRRVYESYGFTPIETPAVERL-EVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTG-----------SEAR   96 (465)
Q Consensus        29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~-~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----------g~~~   96 (465)
                      ...+.+.++++|...||.+++.|.++.. -.|.+-.         ...-|..-.....|.+.+.+           ...+
T Consensus        19 l~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn---------~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~   89 (266)
T d1jjca_          19 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALN---------IPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRL   89 (266)
T ss_dssp             HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGT---------CCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCE
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCC---------CCCCCCHHCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf             999999999999876985840882255144232206---------89312001024469982566445676431100000


Q ss_pred             EECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf             8547760999999999875157745157752400266777775300000000135257
Q T0589            97 ALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGRE  154 (465)
Q Consensus        97 ~Lrpd~t~~~~r~~~~~~~~~~~~~~~~~~g~~fR~~~~~~~r~ref~q~~~~~f~~~  154 (465)
                      .||.-.|+..++...    ....|.++++.|+|||++.....+..+|.|.+.-.++..
T Consensus        90 lLRTHTS~~q~r~~~----~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~  143 (266)
T d1jjca_          90 LLRTHTSPMQVRYMV----AHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEG  143 (266)
T ss_dssp             EECSSSTHHHHHHHH----HSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETT
T ss_pred             HHCCCCCHHHHHHHH----CCCCCCEEEECCCCEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf             011477388899986----149981488403214047888752665302101652410


No 36 
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.99  E-value=7.6e-05  Score=48.43  Aligned_cols=94  Identities=16%  Similarity=0.258  Sum_probs=78.2

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECC--
Q ss_conf             6870289984687899999999999987698599972--898977899999965897999986023438828999858--
Q T0589           369 PTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNF--EKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQ--  444 (465)
Q Consensus       369 ~~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~--~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~--  444 (465)
                      -.|.+.-|+...+++.+||..|-..|++.|+.|++-+  ++-++++.....-..|.||+|+|-++...-+++||.-+-  
T Consensus         6 s~P~DCeIivvnk~~~~YAe~Ie~rL~~~Gl~vd~lf~n~dv~l~~aL~~vs~~G~~faIlVt~qn~~~~S~TvnIL~g~   85 (130)
T d1v95a_           6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGT   85 (130)
T ss_dssp             CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSSS
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCEEEEEECCC
T ss_conf             99955599998775443789999999864977889835875549999998875798369998124054454675200278


Q ss_pred             CCCEEEECHHHHHHHHHH
Q ss_conf             886587148999999999
Q T0589           445 SGEQVEVALADLAEEIKR  462 (465)
Q Consensus       445 t~~q~~v~~~el~~~l~~  462 (465)
                      -.+...+|++|.+..+.+
T Consensus        86 pqEHRNMPleDAl~lva~  103 (130)
T d1v95a_          86 PQEHRNMPQADAMVLVAR  103 (130)
T ss_dssp             CCEEEEEEHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHH
T ss_conf             188878878899999999


No 37 
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}
Probab=96.08  E-value=0.03  Score=31.01  Aligned_cols=88  Identities=16%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCC-CCCEEEECCCCHHHHH
Q ss_conf             999999999999973992500654332677631156310234343320201112213554478-8855785477609999
Q T0589            29 ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDT-GSEARALKFDQTVPLA  107 (465)
Q Consensus        29 ~~~i~~~~~~~~~~~G~~ei~~P~i~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~~~~Lrpd~t~~~~  107 (465)
                      ....++.+|+.+...||+|+.+-.+...+..++.+...                 ...++..+ +.+.-+||+.+.+++.
T Consensus        17 ~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~-----------------~~i~l~NPis~e~~~lR~sLlpgLL   79 (207)
T d1jjcb5          17 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDP-----------------PRLLLLNPLAPEKAALRTHLFPGLV   79 (207)
T ss_dssp             HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCC-----------------CSCEESSCSSGGGSEECSCSHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHCCCC-----------------CCEEEECCCCHHHHHHHHHCCHHHH
T ss_conf             47999999999997796120077768989997506887-----------------7379738740022365440440778


Q ss_pred             HHHHHHHHH-CCCCCCEEEECCCCCCC
Q ss_conf             999998751-57745157752400266
Q T0589           108 AYIARHLND-LTFPFARYQMDVVFRGE  133 (465)
Q Consensus       108 r~~~~~~~~-~~~~~~~~~~g~~fR~~  133 (465)
                      +.+..+.+. .++..++|.+|++|+..
T Consensus        80 ~~~~~N~~r~~~~~~~lFEiG~vf~~~  106 (207)
T d1jjcb5          80 RVLKENLDLDRPERALLFEVGRVFRER  106 (207)
T ss_dssp             HHHHHHHHHSCCSEEEEEEEEEEESSS
T ss_pred             HHHHHCCCCCCCCCEEEEEEEEEEECC
T ss_conf             898747333333430367511065303


No 38 
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=64.10  E-value=3.6  Score=16.95  Aligned_cols=58  Identities=16%  Similarity=0.060  Sum_probs=40.8

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHH
Q ss_conf             8998468789999999999998769859997289897789999996589799998602
Q T0589           374 VVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD  431 (465)
Q Consensus       374 V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~  431 (465)
                      |.+|+.++.+.+.+-++.+.|+++|.+..+-..+..+..-+......|+--.|..|.+
T Consensus        90 vvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i~~G~d  147 (163)
T d7reqb2          90 ADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMD  147 (163)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEECTTCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEECCCCC
T ss_conf             9984576104878999999998564560589706888235999996798768419976


No 39 
>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.69  E-value=4.8  Score=16.11  Aligned_cols=82  Identities=10%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------HHHHHHHHHHCCCCEEEEECHHHHHCCE
Q ss_conf             028998468---78999999999999876985999728989-----------7789999996589799998602343882
Q T0589           372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQ-----------LGKQFQAADKQGIRFCVIIGADEAAAQK  437 (465)
Q Consensus       372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~s-----------ig~k~~~ad~~G~p~~i~ig~~~~~~~~  437 (465)
                      .++.++|++   +.+..+..++.+.|++.|++..+...+..           +++..+...+.|++=+.+.         
T Consensus         8 aeisv~Plg~~~~svs~~Va~~i~~l~~sgl~~~~~pmgT~ieGe~dev~~~i~~~~e~~~~~G~~RV~t~---------   78 (104)
T d1lxja_           8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD---------   78 (104)
T ss_dssp             EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE---------
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE---------
T ss_conf             89998852289975368999999999957994876797326875889999999999999996699868999---------


Q ss_pred             EEEEECCCCCEEEECHHHHHHHHHHHCC
Q ss_conf             8999858886587148999999999639
Q T0589           438 SSLKDLQSGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       438 vtir~r~t~~q~~v~~~el~~~l~~~l~  465 (465)
                      ++|=+|..+.   .++++=++.++++|+
T Consensus        79 ikId~R~dk~---~~~~~Kv~sV~~~l~  103 (104)
T d1lxja_          79 IRVGTRTDKH---QTAQDKIDVVLKKIS  103 (104)
T ss_dssp             EEEECCSSCC---CCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCC---CCHHHHHHHHHHHHC
T ss_conf             8741115998---677888999999854


No 40 
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=53.29  E-value=5.4  Score=15.75  Aligned_cols=85  Identities=16%  Similarity=0.090  Sum_probs=47.7

Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHH-HCCCCEEEEECHHHHHCCEEEEEECCCC
Q ss_conf             8702899846878999999999999876985--999728989778999999-6589799998602343882899985888
Q T0589           370 TPAQVVVVNMQDELMPTYLKVSQQLRQAGLN--VITNFEKRQLGKQFQAAD-KQGIRFCVIIGADEAAAQKSSLKDLQSG  446 (465)
Q Consensus       370 ~p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~--v~~d~~~~sig~k~~~ad-~~G~p~~i~ig~~~~~~~~vtir~r~t~  446 (465)
                      ....|+.++.+.+..+...+..++   .++.  ..+++....+.+.+.... -.|+|+.++||.    +|.|.-|...  
T Consensus        88 ~~~~vv~vs~d~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~----~G~I~~~~~G--  158 (176)
T d1jfua_          88 PNFEVVAINIDTRDPEKPKTFLKE---ANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP----QGCEIATIAG--  158 (176)
T ss_dssp             TTEEEEEEECCCSCTTHHHHHHHH---TTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT----TSBEEEEEES--
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECC----CCEEEEEEEC--
T ss_conf             333321121001203455556765---0875305640420178998764415777776999949----9989999978--


Q ss_pred             CEEEECHHHHHHHHHHHC
Q ss_conf             658714899999999963
Q T0589           447 EQVEVALADLAEEIKRRL  464 (465)
Q Consensus       447 ~q~~v~~~el~~~l~~~l  464 (465)
                      .. +...+|+++.|+.+|
T Consensus       159 ~~-~~~~~e~~~~l~al~  175 (176)
T d1jfua_         159 PA-EWASEDALKLIRAAT  175 (176)
T ss_dssp             CC-CTTSHHHHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHC
T ss_conf             88-888599999999846


No 41 
>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus cereus [TaxId: 1396]}
Probab=46.00  E-value=7  Score=15.00  Aligned_cols=81  Identities=14%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             CEEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCEE
Q ss_conf             02899846--8789999999999998769859997289897-----------7899999965897999986023438828
Q T0589           372 AQVVVVNM--QDELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQKS  438 (465)
Q Consensus       372 ~~V~v~~~--~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~v  438 (465)
                      .++.++|+  ++++..+..++.+.|++.|++..+...+.+|           ++....+-+.|++=+.+.         +
T Consensus         7 v~~~v~P~g~~~s~~~~V~~~i~~i~~sGl~y~~~pmgT~IEGe~d~v~~~v~~~~e~~~~~G~~RV~t~---------i   77 (101)
T d1yqha1           7 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITS---------I   77 (101)
T ss_dssp             EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEE---------E
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE---------E
T ss_conf             9999984689996799999999999974997486699756667999999999999999997699769999---------9


Q ss_pred             EEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf             99985888658714899999999963
Q T0589           439 SLKDLQSGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       439 tir~r~t~~q~~v~~~el~~~l~~~l  464 (465)
                      +|-.|..+.   .++++-++..+++|
T Consensus        78 KId~R~dk~---~~~~~Kv~~~~~k~  100 (101)
T d1yqha1          78 KIHYRPSTG---VTIDEKVWKYRDEY  100 (101)
T ss_dssp             EEECCTTTC---CCHHHHHGGGCTTC
T ss_pred             EEEEECCCC---CCHHHHHHHHHHHC
T ss_conf             998506988---78899999888741


No 42 
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=45.61  E-value=7.1  Score=14.96  Aligned_cols=12  Identities=17%  Similarity=0.221  Sum_probs=5.1

Q ss_pred             CCCCEEEEEECC
Q ss_conf             687028998468
Q T0589           369 PTPAQVVVVNMQ  380 (465)
Q Consensus       369 ~~p~~V~v~~~~  380 (465)
                      |..+-|..+.++
T Consensus       105 p~g~pv~tv~v~  116 (163)
T d1qcza_         105 PRGIPVGTLAIG  116 (163)
T ss_dssp             CTTCCCEECCSS
T ss_pred             CCCCCCEEEEEE
T ss_conf             579996279975


No 43 
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=45.29  E-value=7.2  Score=14.93  Aligned_cols=30  Identities=7%  Similarity=0.122  Sum_probs=13.7

Q ss_pred             CEEEEECHHHHHCCEEEEEECCCCCEEEEC
Q ss_conf             799998602343882899985888658714
Q T0589           423 RFCVIIGADEAAAQKSSLKDLQSGEQVEVA  452 (465)
Q Consensus       423 p~~i~ig~~~~~~~~vtir~r~t~~q~~v~  452 (465)
                      |..+.||-+......++|+-....-+..+|
T Consensus       259 ~~~~~iDGE~~~~~p~~i~v~P~aL~vlvP  288 (295)
T d2bona1         259 DITFNLDGEPLSGQNFHIEILPAALRCRLP  288 (295)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCCCCEEEEEECCEEEEECC
T ss_conf             897993689898986599999798999888


No 44 
>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.37  E-value=11  Score=13.71  Aligned_cols=82  Identities=10%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCH-----------HHHHHHHHHCCCCEEEEECHHHHHCCE
Q ss_conf             028998468---789999999999998769859997289897-----------789999996589799998602343882
Q T0589           372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKRQL-----------GKQFQAADKQGIRFCVIIGADEAAAQK  437 (465)
Q Consensus       372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~si-----------g~k~~~ad~~G~p~~i~ig~~~~~~~~  437 (465)
                      .++.|+|++   +.+..+..++.+.|++.|++..+...+..|           ++........|++=+++.         
T Consensus         8 ae~sv~Pigt~~~svs~yVa~~i~~i~~sGl~y~~~pmgT~IEG~~del~~~v~~~he~~~~~G~~RV~t~---------   78 (104)
T d1lxja_           8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD---------   78 (104)
T ss_dssp             EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE---------
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE---------
T ss_conf             99999746899976899999999999975997586588536777899999999999999997699859999---------


Q ss_pred             EEEEECCCCCEEEECHHHHHHHHHHHCC
Q ss_conf             8999858886587148999999999639
Q T0589           438 SSLKDLQSGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       438 vtir~r~t~~q~~v~~~el~~~l~~~l~  465 (465)
                      ++|=+|..+   ..++++=++-++++|+
T Consensus        79 iKId~R~dk---~~~~~~Kv~sV~~kL~  103 (104)
T d1lxja_          79 IRVGTRTDK---HQTAQDKIDVVLKKIS  103 (104)
T ss_dssp             EEEECCSSC---CCCHHHHHHHHHHHHT
T ss_pred             EEEECCCCC---CCCHHHHHHHHHHHHC
T ss_conf             997614798---7798999999999864


No 45 
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}
Probab=33.24  E-value=7.7  Score=14.74  Aligned_cols=57  Identities=7%  Similarity=0.138  Sum_probs=32.8

Q ss_pred             EEEEECCCCCH-H-HHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHH
Q ss_conf             59997289897-7-8999999658979999860234388289998588865871489999999996
Q T0589           400 NVITNFEKRQL-G-KQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRR  463 (465)
Q Consensus       400 ~v~~d~~~~si-g-~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~  463 (465)
                      .+.+|...... . .-.++..-.|+|..++++++    |.+....|-+|.   ++.+++.++|+++
T Consensus        59 ~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~----G~~~~~~~~~G~---~~~~~~~~~l~~~  117 (117)
T d2fwha1          59 LLQANVTANDAQDVALLKHLNVLGLPTILFFDGQ----GQEHPQARVTGF---MDAETFSAHLRDR  117 (117)
T ss_dssp             EEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTT----SCBCGGGCBCSC---CCHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHEHHHCEEEEEEECC----CCEEECCCCCCC---CCHHHHHHHHHCC
T ss_conf             7750233221678888766356544089999089----969732313335---7999999998349


No 46 
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.88  E-value=12  Score=13.33  Aligned_cols=54  Identities=20%  Similarity=0.264  Sum_probs=26.8

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHH
Q ss_conf             702899846878999999999999876985999728989778999999658979999860234
Q T0589           371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEA  433 (465)
Q Consensus       371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~  433 (465)
                      ++.|+++--.  .......++.+|.+.||.|.+-..+ +.+..++++|     . +++|-+.+
T Consensus       134 ~~~V~v~Esr--P~~eG~~la~~L~~~GI~vtlI~Ds-a~~~~m~~~d-----~-VivGAd~v  187 (274)
T d1vb5a_         134 RFKVILTESS--PDYEGLHLARELEFSGIEFEVITDA-QMGLFCREAS-----I-AIVGADMI  187 (274)
T ss_dssp             CEEEEEECCT--TTTHHHHHHHHHHHTTCCEEEECGG-GHHHHHTTCS-----E-EEECCSEE
T ss_pred             CEEEEEECCC--CCCCHHHHHHHHHHCCCCEEEECCH-HHHHHHHCCC-----E-EEEEEEEE
T ss_conf             7289996787--6555099999998749951784404-8999964088-----7-99954599


No 47 
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} SCOP: d1u0tb_ d1u0ra_ d1u0rd_ d1u0rc_ d1u0rb_ d1y3ia1
Probab=25.00  E-value=15  Score=12.76  Aligned_cols=43  Identities=12%  Similarity=0.131  Sum_probs=23.5

Q ss_pred             CEEEEECHHH---H-HCCEEEEEECC-CCCEEEECHHHHHHHHHHHCC
Q ss_conf             7999986023---4-38828999858-886587148999999999639
Q T0589           423 RFCVIIGADE---A-AAQKSSLKDLQ-SGEQVEVALADLAEEIKRRLT  465 (465)
Q Consensus       423 p~~i~ig~~~---~-~~~~vtir~r~-t~~q~~v~~~el~~~l~~~l~  465 (465)
                      +-.+++|.+.   + ..++|+|+.-. .-.-.+.+-.+.-+.|++||.
T Consensus       247 ~~~i~~DG~~~~~l~~g~~i~I~~s~~~~~lv~~~~~~f~~~lr~Kl~  294 (302)
T d1u0ta_         247 DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFR  294 (302)
T ss_dssp             CEEEEETTTEEEEECTTCEEEEEECSSCEEEEECSCCCHHHHHHHHHT
T ss_pred             EEEEEEECCEEEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHC
T ss_conf             279998053447727898999998797279998479897999898718


No 48 
>d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain {Bacteriophage Psa [TaxId: 171618]}
Probab=23.08  E-value=16  Score=12.52  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             679999999999999999739925
Q T0589            24 SEKRLELYLLDTIRRVYESYGFTP   47 (465)
Q Consensus        24 ~g~~~~~~i~~~~~~~~~~~G~~e   47 (465)
                      .+..+...+-..+.+.+++.|+.-
T Consensus        22 ~E~~~~~~ia~~l~~~L~~~G~~V   45 (180)
T d1xova2          22 SEIKEAEKVLNAASDELKREGHNV   45 (180)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             279999999999999999679928


No 49 
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=21.38  E-value=18  Score=12.30  Aligned_cols=30  Identities=13%  Similarity=0.115  Sum_probs=15.1

Q ss_pred             CCCEEEEEECCHH-----HHHHHHHHHHHHHHCCC
Q ss_conf             8702899846878-----99999999999987698
Q T0589           370 TPAQVVVVNMQDE-----LMPTYLKVSQQLRQAGL  399 (465)
Q Consensus       370 ~p~~V~v~~~~~~-----~~~~a~~i~~~Lr~~gi  399 (465)
                      ......|+-+++.     ....+.++.+.|.+.|-
T Consensus        82 ~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA  116 (152)
T d1bvyf_          82 KGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGA  116 (152)
T ss_dssp             TTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             57604666256640666660589999999998699


No 50 
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.88  E-value=18  Score=12.23  Aligned_cols=81  Identities=15%  Similarity=0.191  Sum_probs=51.1

Q ss_pred             CEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCC-----C---HHHHHHH----HHHCCCCEEEEECHHHHHCC
Q ss_conf             028998468---7899999999999987698599972898-----9---7789999----99658979999860234388
Q T0589           372 AQVVVVNMQ---DELMPTYLKVSQQLRQAGLNVITNFEKR-----Q---LGKQFQA----ADKQGIRFCVIIGADEAAAQ  436 (465)
Q Consensus       372 ~~V~v~~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~-----s---ig~k~~~----ad~~G~p~~i~ig~~~~~~~  436 (465)
                      .++.|+|++   +.+..+..++.+.|++.|++..+...+.     +   +-.-+++    ....|++=+.+.        
T Consensus         4 aei~v~P~gt~~~svs~yVa~~i~~i~~sGl~y~~~pmgT~IEg~d~dev~~~v~~~he~~~~~G~~RV~t~--------   75 (99)
T d1lxna_           4 AELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTT--------   75 (99)
T ss_dssp             EEEEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEEE--------
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEE--------
T ss_conf             999997579999878999999999999759975746880353379899999999999999997799869999--------


Q ss_pred             EEEEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf             2899985888658714899999999963
Q T0589           437 KSSLKDLQSGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       437 ~vtir~r~t~~q~~v~~~el~~~l~~~l  464 (465)
                       ++|=+|..+.+   ++++=++-++++|
T Consensus        76 -iKId~R~dk~~---~~~~Kv~sV~~kl   99 (99)
T d1lxna_          76 -LKIDDRRDADR---GLRDKVESVKEKI   99 (99)
T ss_dssp             -EEEEEESSSCC---CHHHHHHHHHHHC
T ss_pred             -EEEECCCCCCC---CHHHHHHHHHHHC
T ss_conf             -99760379777---8899999999549


No 51 
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.39  E-value=19  Score=12.16  Aligned_cols=66  Identities=9%  Similarity=0.188  Sum_probs=38.3

Q ss_pred             HHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf             999999876985999728989778999-9996589799998602343882899985888658714899999999963
Q T0589           389 KVSQQLRQAGLNVITNFEKRQLGKQFQ-AADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL  464 (465)
Q Consensus       389 ~i~~~Lr~~gi~v~~d~~~~sig~k~~-~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~v~~~el~~~l~~~l  464 (465)
                      +|.+.+.+.-|-+.+|..+ .-+..+. +..-.|+|++++|++++   |++ +|.- .    .++.+++++.|++.|
T Consensus        69 ~V~~~l~~~fV~~~v~~~~-~e~~~~~~~y~v~~~Pti~~idp~~---ge~-v~~~-~----~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1          69 AVKNIIREHFIFWQVYHDS-EEGQRYIQFYKLGDFPYVSILDPRT---GQK-LVEW-H----QLDVSSFLDQVTGFL  135 (147)
T ss_dssp             HHHHHHHHTEEEEEEESSS-HHHHHHHHHHTCCSSSEEEEECTTT---CCC-CEEE-S----SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHEEEEEECCCC-HHHHHHHHHEECCCEEEEEEEECCC---CEE-ECCC-C----CCCHHHHHHHHHHHH
T ss_conf             9999975245676511110-1356565500037614899980899---857-5024-8----889999999999999


No 52 
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.35  E-value=19  Score=12.16  Aligned_cols=14  Identities=21%  Similarity=0.404  Sum_probs=7.2

Q ss_pred             CHHHHHHHHHHHCC
Q ss_conf             48999999999639
Q T0589           452 ALADLAEEIKRRLT  465 (465)
Q Consensus       452 ~~~el~~~l~~~l~  465 (465)
                      +.+++++.+++.|+
T Consensus       118 ~~~~I~~~i~~ll~  131 (132)
T d1w85b2         118 NFKDVIETAKKVMN  131 (132)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHC
T ss_conf             99999999999848


No 53 
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=20.11  E-value=19  Score=12.12  Aligned_cols=79  Identities=18%  Similarity=0.149  Sum_probs=38.4

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCEEE
Q ss_conf             70289984687899999999999987698599972898977899999965897999986023438828999858886587
Q T0589           371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVE  450 (465)
Q Consensus       371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r~t~~q~~  450 (465)
                      .+.|..+.......... ....+.-.....+..| .++.+++.|   .-.|+|..++||+    +|.|.-+..  |.   
T Consensus        49 ~~~vi~i~~~~~~~~~~-~~~~~~~~~~~~~~~d-~~~~~~~~~---~v~~~P~~~liD~----~G~i~~~~~--G~---  114 (136)
T d1z5ye1          49 GIRVVGMNYKDDRQKAI-SWLKELGNPYALSLFD-GDGMLGLDL---GVYGAPETFLIDG----NGIIRYRHA--GD---  114 (136)
T ss_dssp             TCCEEEEEESCCHHHHH-HHHHHHCCCCSEEEEE-SSCHHHHHH---TCCSBSEEEEECT----TSCEEEEEE--SC---
T ss_pred             HHHHCCCCCCCCHHHHH-HHHHHCCCCCCEEECC-CCHHHHHHC---CCCCCCEEEEECC----CCEEEEEEE--CC---
T ss_conf             11001223355304568-8999809863202113-230677751---5577535899968----998999997--68---


Q ss_pred             ECHHHHHHHHHHH
Q ss_conf             1489999999996
Q T0589           451 VALADLAEEIKRR  463 (465)
Q Consensus       451 v~~~el~~~l~~~  463 (465)
                      ++.+++.+.|++.
T Consensus       115 ~~~~~l~~~i~~l  127 (136)
T d1z5ye1         115 LNPRVWEEEIKPL  127 (136)
T ss_dssp             CCHHHHHHHTHHH
T ss_pred             CCHHHHHHHHHHH
T ss_conf             9989999999999


No 54 
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}
Probab=20.08  E-value=18  Score=12.26  Aligned_cols=45  Identities=13%  Similarity=0.094  Sum_probs=30.9

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf             7028998468789999999999998769859997289897789999
Q T0589           371 PAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQA  416 (465)
Q Consensus       371 p~~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~k~~~  416 (465)
                      +.+++++-.++....-..++.+.|++.||.+++.+.+ +.=+.|+-
T Consensus        58 ~peilliGtG~~~~~~~~~~~~~l~~~gI~~EvM~T~-aAcrTfNv  102 (118)
T d2fi9a1          58 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG-AAVRTFNV  102 (118)
T ss_dssp             GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH-HHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCH-HHHHHHHH
T ss_conf             8878998137655689999999999869848995849-99999999


No 55 
>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=20.01  E-value=19  Score=12.11  Aligned_cols=77  Identities=9%  Similarity=0.025  Sum_probs=45.4

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH---------HHHHHHHCCCCEEEEECHHHHHCCEEEEEEC
Q ss_conf             2899846878999999999999876985999728989778---------9999996589799998602343882899985
Q T0589           373 QVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGK---------QFQAADKQGIRFCVIIGADEAAAQKSSLKDL  443 (465)
Q Consensus       373 ~V~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~sig~---------k~~~ad~~G~p~~i~ig~~~~~~~~vtir~r  443 (465)
                      .|+|+-.+..+  -+.+++..|.+.|..|.+-.....++.         -.++..+.|+.+..-..-.+++.+.+.+++.
T Consensus        41 ~vvi~d~ggg~--ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~  118 (156)
T d1djqa2          41 RVVILNADTYF--MAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNI  118 (156)
T ss_dssp             EEEEEECCCSS--HHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEET
T ss_pred             CEEEEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCCEEEEEE
T ss_conf             26999659974--7999999999759969999437745431261677899999864152387062888741762378752


Q ss_pred             CCCCEEEE
Q ss_conf             88865871
Q T0589           444 QSGEQVEV  451 (465)
Q Consensus       444 ~t~~q~~v  451 (465)
                      .+....++
T Consensus       119 ~~~~~~~v  126 (156)
T d1djqa2         119 WGDGSKRT  126 (156)
T ss_dssp             TCSCSCCC
T ss_pred             ECCCCCEE
T ss_conf             00011106


Done!