Query         T0590 MaR143A, , 137 residues
Match_columns 137
No_of_seqs    127 out of 1654
Neff          6.5 
Searched_HMMs 22458
Date          Mon Jul  5 08:56:25 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0590.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0590.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1l0q_A Surface layer protein;   99.9 6.1E-23 2.7E-27  140.4   8.2   81   56-136   299-381 (391)
  2 2c4x_A Endoglucanase, ctcel9D-  99.8 1.6E-21 7.1E-26  132.8   8.5   82   55-136     3-92  (260)
  3 1wgo_A VPS10 domain-containing  99.7 1.4E-17 6.1E-22  111.7   7.7   58   79-136    52-116 (123)
  4 1b4r_A Protein (PKD1_human); P  99.6 9.7E-16 4.3E-20  101.8   8.0   65   72-136     9-77  (80)
  5 2yrl_A KIAA1837 protein; PKD d  98.8 5.3E-09 2.4E-13   65.7   5.0   76   61-136     6-94  (102)
  6 2e7m_A Protein KIAA0319; PKD d  96.8 0.00021 9.1E-09   41.1   1.0   53   84-136    42-104 (113)
  7 2kpn_A Bacillolysin; solution   92.4    0.11 4.7E-06   26.5   4.0   28  108-135    53-81  (103)
  8 1edq_A Chitinase A; beta-alpha  88.7    0.56 2.5E-05   22.7   4.8   63   73-135    35-107 (540)
  9 2hz6_A Endoplasmic reticulum t  87.3    0.11 4.9E-06   26.5   0.5   66   59-124   283-352 (369)
 10 2oz4_A Intercellular adhesion   80.6     2.1 9.3E-05   19.6   4.7   59   74-136   202-261 (265)
 11 3b9e_A Chitinase A; TIM-barrel  77.5     1.6 7.2E-05   20.2   3.3   31  105-135    77-108 (584)
 12 1w0n_A Endo-1,4-beta-xylanase   77.3       1 4.5E-05   21.3   2.2   36   92-128    84-119 (131)
 13 1b3i_A PETE protein, protein (  64.4     5.6 0.00025   17.3   4.0   23   99-121    61-83  (97)
 14 1bxv_A Plastocyanin; copper pr  62.0     3.7 0.00016   18.3   2.4   50   73-122    23-78  (91)
 15 1paz_A Pseudoazurin precursor;  60.6     2.3  0.0001   19.4   1.2   54   66-119    18-77  (123)
 16 2ux6_A Pseudoazurin; type-1 co  58.8     2.8 0.00013   18.9   1.4   54   66-119    18-77  (122)
 17 2ov0_A Amicyanin; beta-sandwic  54.8     6.8  0.0003   16.9   2.7   50   73-122    37-94  (105)
 18 3c12_A FLGD, flagellar protein  54.4     8.5 0.00038   16.4   5.9   44   79-130    56-99  (138)
 19 1l3w_A EP-cadherin, C-cadherin  54.1     3.4 0.00015   18.5   1.1   20  108-127   505-524 (546)
 20 2wcp_A Cadherin-23, otocadheri  53.2     8.9  0.0004   16.3   3.1   59   77-135   130-202 (214)
 21 1pmy_A Pseudoazurin; electron   50.3     8.2 0.00036   16.4   2.6   56   66-121    18-79  (123)
 22 3erx_A Pseudoazurin; copper pr  41.8     7.3 0.00032   16.7   1.2   52   71-122    23-80  (123)
 23 1pcs_A Plastocyanin; electron   40.5      14 0.00064   15.1   2.7   19  103-121    66-84  (98)
 24 3ef4_A Pseudoazurin, blue copp  38.7     6.8  0.0003   16.9   0.7   50   71-120    24-79  (124)
 25 1id2_A Amicyanin; beta barrel,  34.0      18 0.00082   14.6   2.7   52   72-123    37-96  (106)
 26 1q55_A EP-cadherin, C-cadherin  32.8      19 0.00086   14.4   3.4   13  113-125   558-570 (880)
 27 1j83_A Endo-1,4-beta glucanase  32.3     7.8 0.00035   16.5   0.2   19  109-127   124-142 (180)
 28 1kdj_A Plastocyanin; electron   31.9      19 0.00085   14.5   2.1   20  103-122    70-89  (102)
 29 1plc_A Plastocyanin; electron   27.0      25  0.0011   13.9   3.0   17  105-121    69-85  (99)
 30 2c9r_A COPC, copper resistance  26.6      25  0.0011   13.8   3.2   26  111-136    74-102 (102)
 31 1v8h_A Sulfur oxidation protei  24.5      27  0.0012   13.6   4.4   38   99-136    65-105 (107)
 32 3c75_A Amicyanin; copper prote  22.8      30  0.0013   13.4   2.7   50   73-122    64-121 (132)
 33 1lyq_A PCOC copper resistance   21.5      32  0.0014   13.3   3.2   26  111-136    76-104 (104)
 34 1pmh_X Cscbm27-1, beta-1,4-man  20.9      24  0.0011   14.0   0.9   16  112-127   132-147 (185)

No 1  
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta- propeller, PKD superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei s-6} SCOP: b.1.3.1 b.69.2.3
Probab=99.88  E-value=6.1e-23  Score=140.39  Aligned_cols=81  Identities=46%  Similarity=0.740  Sum_probs=74.2

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCC--EEEEECCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEE
Q ss_conf             44333222320331147754851--5743388895069997289840246874578748963579888877999500578
Q T0590            56 HSSPVLPTARFTSDITEGFAPLS--VRFKDFSENATSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASV  133 (137)
Q Consensus        56 ~~~~~~p~a~f~~~~~~g~~pl~--v~Ftd~s~~~~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~  133 (137)
                      ......|.++|.+.++.|.+||.  |+|+|.|.++.+|.||||||.++++++|.|+|.++|+|+|+|+|+|+.|++++++
T Consensus       299 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~w~f~dg~~~~~~~~~~~~~~~g~y~v~l~~~~~~~~~~~~~  378 (391)
T 1l0q_A          299 PVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTVRLTVSNSNGTDSQIS  378 (391)
T ss_dssp             SSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSSCEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCEEEE
T ss_conf             54455764330653544531352406853389995289999889972663586489968978999999988999640899


Q ss_pred             EEE
Q ss_conf             876
Q T0590           134 TIR  136 (137)
Q Consensus       134 tV~  136 (137)
                      +|.
T Consensus       379 ~~~  381 (391)
T 1l0q_A          379 TVN  381 (391)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999


No 2  
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate binding module, beta-sandwich proteins; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=99.85  E-value=1.6e-21  Score=132.77  Aligned_cols=82  Identities=29%  Similarity=0.392  Sum_probs=68.8

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCEEEE-----ECCCCCEEEEEECCCCCCCCCCC--CCEEECCCCCEEEEEEEECCCC
Q ss_conf             4443332223203311477548515743-----38889506999728984024687--4578748963579888877999
Q T0590            55 LHSSPVLPTARFTSDITEGFAPLSVRFK-----DFSENATSRLWMFGDGNTSDSPS--PLHTFFNEGEYIVSLIVSNEND  127 (137)
Q Consensus        55 ~~~~~~~p~a~f~~~~~~g~~pl~v~Ft-----d~s~~~~~~~WdFGDG~~st~~n--p~htY~~~G~YtVtLtvtn~~G  127 (137)
                      ..+.+.+|+|.|+++++.+++|++|+|.     |.++.+++|.||||||..++.++  ++|+|..+|+|+|+|+|+|+.|
T Consensus         3 ~~~~N~~PvA~ft~~~~~~~~~~tv~F~~~~S~D~dg~~~sy~WdFgDG~~st~~~~~~shty~~~G~YtV~LtVtD~~G   82 (260)
T 2c4x_A            3 SVPENQAPKAIFTFSPEDPVTDENVVFNASNSIDEDGTIAYYVWDFGDGYEGTSTTPTITYKYKNPGTYKVKLIVTDNQG   82 (260)
T ss_dssp             --CCCCCCBCCCEEESSSCBTTCCEEEECTTCBCSSSCEEEEEEECSSSCEEEESSSEEEECCSSCEEEEEEEEEEETTS
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf             48899898889997677778997899971046389999899999919998735227607999377877789999998997


Q ss_pred             -CEEEEEEEE
Q ss_conf             -500578876
Q T0590           128 -SDSASVTIR  136 (137)
Q Consensus       128 -s~t~t~tV~  136 (137)
                       +++++++|.
T Consensus        83 ~s~t~t~~V~   92 (260)
T 2c4x_A           83 ASSSFTATIK   92 (260)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEE
T ss_conf             2488899999


No 3  
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=99.71  E-value=1.4e-17  Score=111.72  Aligned_cols=58  Identities=26%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             EEEEECCCCCEEEEEECCCCC-------CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE
Q ss_conf             574338889506999728984-------0246874578748963579888877999500578876
Q T0590            79 VRFKDFSENATSRLWMFGDGN-------TSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR  136 (137)
Q Consensus        79 v~Ftd~s~~~~~~~WdFGDG~-------~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~  136 (137)
                      +.+.+.++.+++|.||||||+       ++++++|+|+|..+|+|+|+|+|+|..|+++.++.|.
T Consensus        52 ~~~~~~d~~~~sy~WDFGDG~~~~~~~~ts~~~~~~H~y~~~G~Y~Vtltv~n~~gs~t~~~~v~  116 (123)
T 1wgo_A           52 VRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRHRYESPGIYRVSVRAENTAGHDEAVLFVQ  116 (123)
T ss_dssp             EEESSCCSCSCEEEEECSSSCEEEEESHHHHTCCEEECCSSCSCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEEEEEE
T ss_conf             83348999836899992899610156446588784798850895589999997999688999999


No 4  
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=99.62  E-value=9.7e-16  Score=101.80  Aligned_cols=65  Identities=20%  Similarity=0.327  Sum_probs=52.7

Q ss_pred             CCCCCCCEEEEECC-CCCEEEEEECCCCCC---CCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE
Q ss_conf             77548515743388-895069997289840---246874578748963579888877999500578876
Q T0590            72 EGFAPLSVRFKDFS-ENATSRLWMFGDGNT---SDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR  136 (137)
Q Consensus        72 ~g~~pl~v~Ftd~s-~~~~~~~WdFGDG~~---st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~  136 (137)
                      ..+++..++|.+.+ .++.+|.||||||+.   +.+.+++|+|..+|+|+|+|+|+|..|+...++.|.
T Consensus         9 p~~~G~~v~F~~~ss~~~~sy~WdFGDG~~~~~~~~~~~~hty~~~G~Y~Vtltv~~~~g~~~~~~~V~   77 (80)
T 1b4r_A            9 PLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALLGTDVQ   77 (80)
T ss_dssp             CCBSSEEEEEEEESCSSCSEEEEECCSSCCEEEEETTEEEEEECSSEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCEECCCCEEEEECCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf             746997789996589994289999689985623779747999641887999999993997299889999


No 5  
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77  E-value=5.3e-09  Score=65.67  Aligned_cols=76  Identities=21%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             CCCCCCEEECCCCCCCCCEEEEEC----CCCCEEEEEECCCCCC------CCCCCCCEEECCCCCEEEEEEEECCCC---
Q ss_conf             222320331147754851574338----8895069997289840------246874578748963579888877999---
Q T0590            61 LPTARFTSDITEGFAPLSVRFKDF----SENATSRLWMFGDGNT------SDSPSPLHTFFNEGEYIVSLIVSNEND---  127 (137)
Q Consensus        61 ~p~a~f~~~~~~g~~pl~v~Ftd~----s~~~~~~~WdFGDG~~------st~~np~htY~~~G~YtVtLtvtn~~G---  127 (137)
                      .|+|+.-.+.+......+|.|...    ..++++|.|.|.+|-.      .+..+++|+|..+|+|+++|+|+|..|   
T Consensus         6 ~p~A~AG~d~~v~~p~~~vtL~gs~S~d~~~~~ty~W~~~~gp~~~~~~~~~~~~~~~t~~~~Gty~~~LtVtD~~G~s~   85 (102)
T 2yrl_A            6 SGQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQS   85 (102)
T ss_dssp             CCSCCCCSCEEEETTCCEEEEECCTTCSSSCBCCCCEEEEESCTTCEEESTTSSEEEEESCCSSEEEEEEEEEBTTCCEE
T ss_pred             CCCEECCCCEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCEE
T ss_conf             98078589829846898799962713799985899999877997107614787558887578848999999996999857


Q ss_pred             CEEEEEEEE
Q ss_conf             500578876
Q T0590           128 SDSASVTIR  136 (137)
Q Consensus       128 s~t~t~tV~  136 (137)
                      +++.+++|+
T Consensus        86 s~~~~VtV~   94 (102)
T 2yrl_A           86 QSSVNVIVK   94 (102)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
T ss_conf             807999999


No 6  
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84  E-value=0.00021  Score=41.10  Aligned_cols=53  Identities=19%  Similarity=0.211  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEECCCC---CCC-----CCCCCCEEECCCCCEEEEEEEECCCCC--EEEEEEEE
Q ss_conf             888950699972898---402-----468745787489635798888779995--00578876
Q T0590            84 FSENATSRLWMFGDG---NTS-----DSPSPLHTFFNEGEYIVSLIVSNENDS--DSASVTIR  136 (137)
Q Consensus        84 ~s~~~~~~~WdFGDG---~~s-----t~~np~htY~~~G~YtVtLtvtn~~Gs--~t~t~tV~  136 (137)
                      ....+.+|.|.+-.|   ...     ....+......+|+|..+|+|+|..++  ++.+++|+
T Consensus        42 ~~~~~ltY~W~~vsgP~~~~~~~~~~~~~~~~~s~~~~G~Y~f~LtVsD~~~~~~d~V~VtV~  104 (113)
T 2e7m_A           42 PVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGLYVFKVTVSSENAFGEGFVNVTVK  104 (113)
T ss_dssp             CSSCCCCCBCCEEECCTTCCCCCCTTSSSEEEECSCCSEEEEECCEEEETTEEEECCEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCCCCEECCCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             899858999897348887511004687636862025550799999998999848737999996


No 7  
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open target, NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=92.44  E-value=0.11  Score=26.55  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             EEECCCCCEEEEEEEECCCC-CEEEEEEE
Q ss_conf             78748963579888877999-50057887
Q T0590           108 HTFFNEGEYIVSLIVSNEND-SDSASVTI  135 (137)
Q Consensus       108 htY~~~G~YtVtLtvtn~~G-s~t~t~tV  135 (137)
                      .-..++|+|.|+.+|+|..| ..+++++|
T Consensus        53 vd~~~~G~Y~vtYtvtD~~Gn~~t~~~tV   81 (103)
T 2kpn_A           53 VDTTKAGTYVLTYTVTDSKGHEVTAKQTV   81 (103)
T ss_dssp             CCSSSCEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf             67786034999999997999999999999


No 8  
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A* 1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Probab=88.66  E-value=0.56  Score=22.69  Aligned_cols=63  Identities=14%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             CCCCCCEEEEECCCC-CEEEEEECCCCCC------CCCCCCCEEECCCCCEEEEEEEECCCCC-EE--EEEEE
Q ss_conf             754851574338889-5069997289840------2468745787489635798888779995-00--57887
Q T0590            73 GFAPLSVRFKDFSEN-ATSRLWMFGDGNT------SDSPSPLHTFFNEGEYIVSLIVSNENDS-DS--ASVTI  135 (137)
Q Consensus        73 g~~pl~v~Ftd~s~~-~~~~~WdFGDG~~------st~~np~htY~~~G~YtVtLtvtn~~Gs-~t--~t~tV  135 (137)
                      ..++.+|.+.--|++ ...+.=-|.+-..      .....+.++|.++|.|.+++++.|..|+ .+  .+++|
T Consensus        35 ~~~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~s~~~~~~v  107 (540)
T 1edq_A           35 NAADVSVSWNLWNGDTGTTAKVLLNGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVV  107 (540)
T ss_dssp             SSEEEEEEEECCSSCCCSEEEEEETTEEEEEEECCSSEEEEEEEECSCEEEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCEEEEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEE
T ss_conf             3627888887522898707999989879996047887505888606894699999997799875566548999


No 9  
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=87.34  E-value=0.11  Score=26.48  Aligned_cols=66  Identities=18%  Similarity=0.054  Sum_probs=50.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCEEEEECCCCC--EEEEEECCCCC--CCCCCCCCEEECCCCCEEEEEEEEC
Q ss_conf             332223203311477548515743388895--06999728984--0246874578748963579888877
Q T0590            59 PVLPTARFTSDITEGFAPLSVRFKDFSENA--TSRLWMFGDGN--TSDSPSPLHTFFNEGEYIVSLIVSN  124 (137)
Q Consensus        59 ~~~p~a~f~~~~~~g~~pl~v~Ftd~s~~~--~~~~WdFGDG~--~st~~np~htY~~~G~YtVtLtvtn  124 (137)
                      ...+.+.+...+..|..++.+.|.|.+...  .++.|+|.-+.  .+..+++.+.|...|.|.+.+++.-
T Consensus       283 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~p~~~~~  352 (369)
T 2hz6_A          283 VAVVPRGSTLPLLEGPQTDGVTIGDKGESVITPSTDVKFDPGLKSKNKLNYLRNYWLLIGHHETPLSAST  352 (369)
T ss_dssp             CCBC--------------------------------------------------CTTTCBBCBCC-----
T ss_pred             CCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCH
T ss_conf             3142167775556787776511025776645666334357876443654465544266532678723200


No 10 
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerization, cell adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=80.57  E-value=2.1  Score=19.62  Aligned_cols=59  Identities=12%  Similarity=-0.062  Sum_probs=37.7

Q ss_pred             CCCCCEEEEECCCCCEEEEEECCCCC-CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE
Q ss_conf             54851574338889506999728984-0246874578748963579888877999500578876
Q T0590            74 FAPLSVRFKDFSENATSRLWMFGDGN-TSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR  136 (137)
Q Consensus        74 ~~pl~v~Ftd~s~~~~~~~WdFGDG~-~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~  136 (137)
                      .+-|++.+...  -...+.|-+.+.. .....-...+....|.|+..  |+|..|+.++..+|+
T Consensus       202 ~~~l~C~~~g~--P~p~v~W~k~g~~~~~~~~~~~v~~~d~G~Y~C~--a~N~~G~~~~~~~l~  261 (265)
T 2oz4_A          202 QQTPMCQAWGN--PLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCR--ARSTQGEVTREVTVN  261 (265)
T ss_dssp             EECCCCCCEEE--SCCEEEEEETTTEECCTTSCEECCGGGCEEEEEE--EEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCC--CCCEEEEEECCEECCCCCCEEEECHHHCEEEEEE--EEECCCEEEEEEEEE
T ss_conf             39999995889--9999999999939478894697102409999999--992998099999999


No 11 
>3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A
Probab=77.50  E-value=1.6  Score=20.23  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             CCCEEECCCCCEEEEEEEECCCCC-EEEEEEE
Q ss_conf             745787489635798888779995-0057887
Q T0590           105 SPLHTFFNEGEYIVSLIVSNENDS-DSASVTI  135 (137)
Q Consensus       105 np~htY~~~G~YtVtLtvtn~~Gs-~t~t~tV  135 (137)
                      ..++.|.+.|.|.+++++.|..|+ .+.++.|
T Consensus        77 ~~~~~~~~~g~~~~~~~~~~~~g~s~s~~~~~  108 (584)
T 3b9e_A           77 TASFEYGQGGLYQMEIEACDATGCSKSAPVEI  108 (584)
T ss_dssp             EEEEEECCCEEEEEEEEEECSSCEEECCCEEE
T ss_pred             EEEEECCCCCEEEEEEEEECCCCCCCCCCCCE
T ss_conf             89884057834899999976888766786014


No 12 
>1w0n_A Endo-1,4-beta-xylanase D; hydrolase, carbohydrate-binding module, carbohydrate binding, CBM36; 0.8A {Paenibacillus polymyxa} SCOP: b.18.1.28 PDB: 1ux7_A
Probab=77.26  E-value=1  Score=21.33  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             EEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCC
Q ss_conf             9972898402468745787489635798888779995
Q T0590            92 LWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDS  128 (137)
Q Consensus        92 ~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs  128 (137)
                      ...|+ |+..+++.....|...|.++|.|.|+.++|+
T Consensus        84 tfyf~-gt~P~~~ti~Nv~~~tG~~~velvvtaDnGt  119 (131)
T 1w0n_A           84 SFNFT-GKTPTVQTLSNITHATGDQEIKLALTSDDGT  119 (131)
T ss_dssp             EEEEE-SSSCEEEEEEEEECCCEEEEEEEEESCSSSS
T ss_pred             EEEEC-CCCCEEEEECCCCCCCCCEEEEEEEECCCCC
T ss_conf             89955-8564478801112167977899999868971


No 13 
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=64.36  E-value=5.6  Score=17.34  Aligned_cols=23  Identities=13%  Similarity=-0.024  Sum_probs=15.9

Q ss_pred             CCCCCCCCCEEECCCCCEEEEEE
Q ss_conf             40246874578748963579888
Q T0590            99 NTSDSPSPLHTFFNEGEYIVSLI  121 (137)
Q Consensus        99 ~~st~~np~htY~~~G~YtVtLt  121 (137)
                      ....++.-+|+|.++|+|.---+
T Consensus        61 ~~~~g~~~~~tf~~~G~Y~Y~C~   83 (97)
T 1b3i_A           61 AIAPGSFYSVTLGTPGTYSFYCT   83 (97)
T ss_dssp             CCSCSCCEEEECCSCSEEEEECS
T ss_pred             CCCCCEEEEEECCCCEEEEEEEC
T ss_conf             56864589997788878999925


No 14 
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus pcc 7942} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=62.00  E-value=3.7  Score=18.30  Aligned_cols=50  Identities=16%  Similarity=-0.037  Sum_probs=25.2

Q ss_pred             CCCCCCEEEEECCCCCEEEEEE------CCCCCCCCCCCCCEEECCCCCEEEEEEE
Q ss_conf             7548515743388895069997------2898402468745787489635798888
Q T0590            73 GFAPLSVRFKDFSENATSRLWM------FGDGNTSDSPSPLHTFFNEGEYIVSLIV  122 (137)
Q Consensus        73 g~~pl~v~Ftd~s~~~~~~~Wd------FGDG~~st~~np~htY~~~G~YtVtLtv  122 (137)
                      ..++.+|.|.+.+.......=+      |.++....++.-+|+|..||+|...-+.
T Consensus        23 V~~GdtV~~~n~~~~~h~~~~~~~~~~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~   78 (91)
T 1bxv_A           23 IQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGETFEATFSEPGTYTYYCEP   78 (91)
T ss_dssp             ECTTCEEEEEECSSCCEEEEETTCGGGCEEEEECSTTCEEEEECCSCEEEEEECTT
T ss_pred             ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf             98999999998998862388447553455655617997699996238879999687


No 15 
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=60.57  E-value=2.3  Score=19.35  Aligned_cols=54  Identities=17%  Similarity=0.153  Sum_probs=27.6

Q ss_pred             CEEECCCCCCCCCEEEEECCCC--CEEE--EEECCCCCCC--CCCCCCEEECCCCCEEEE
Q ss_conf             0331147754851574338889--5069--9972898402--468745787489635798
Q T0590            66 FTSDITEGFAPLSVRFKDFSEN--ATSR--LWMFGDGNTS--DSPSPLHTFFNEGEYIVS  119 (137)
Q Consensus        66 f~~~~~~g~~pl~v~Ftd~s~~--~~~~--~WdFGDG~~s--t~~np~htY~~~G~YtVt  119 (137)
                      |....-...++.+|.|...+.+  ....  .|..+.....  ..+..+|+|..+|+|.--
T Consensus        18 F~P~~i~I~~GdTV~f~n~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~   77 (123)
T 1paz_A           18 FEPAYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVK   77 (123)
T ss_dssp             EESSEEEECTTCEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEE
T ss_pred             EECCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEE
T ss_conf             857889988999899998999723774167576653222224686337960688069998


No 16 
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=58.84  E-value=2.8  Score=18.92  Aligned_cols=54  Identities=17%  Similarity=0.014  Sum_probs=30.1

Q ss_pred             CEEECCCCCCCCCEEEEECCCCC--EEEE--EECCCCCC--CCCCCCCEEECCCCCEEEE
Q ss_conf             03311477548515743388895--0699--97289840--2468745787489635798
Q T0590            66 FTSDITEGFAPLSVRFKDFSENA--TSRL--WMFGDGNT--SDSPSPLHTFFNEGEYIVS  119 (137)
Q Consensus        66 f~~~~~~g~~pl~v~Ftd~s~~~--~~~~--WdFGDG~~--st~~np~htY~~~G~YtVt  119 (137)
                      |........++-+|.|.+.+...  ....  ...|+...  ...+.-+|+|..+|+|..-
T Consensus        18 F~P~~ltI~~GdTV~w~n~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~Y~Y~   77 (122)
T 2ux6_A           18 FEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVK   77 (122)
T ss_dssp             EESSEEEECTTEEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCCEEEEECSCEEEEEE
T ss_pred             EECCEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEE
T ss_conf             847889987999899999998842202024476774333456786378971678169997


No 17 
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A 2gba_A ...
Probab=54.76  E-value=6.8  Score=16.88  Aligned_cols=50  Identities=12%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             CCCCCCEEEEECCCCCEEEEEECC---C-----CCCCCCCCCCEEECCCCCEEEEEEE
Q ss_conf             754851574338889506999728---9-----8402468745787489635798888
Q T0590            73 GFAPLSVRFKDFSENATSRLWMFG---D-----GNTSDSPSPLHTFFNEGEYIVSLIV  122 (137)
Q Consensus        73 g~~pl~v~Ftd~s~~~~~~~WdFG---D-----G~~st~~np~htY~~~G~YtVtLtv  122 (137)
                      ..++.+|.|.+.+...-.....-+   .     +....++.-+++|.+||+|...-..
T Consensus        37 V~~GdtV~~~N~d~~~Hnv~~~~~~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~   94 (105)
T 2ov0_A           37 VKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTP   94 (105)
T ss_dssp             ECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS
T ss_pred             ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC
T ss_conf             8899999998899886427873775776544555536895479995388389998478


No 18 
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=54.36  E-value=8.5  Score=16.36  Aligned_cols=44  Identities=14%  Similarity=0.298  Sum_probs=26.4

Q ss_pred             EEEEECCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEE
Q ss_conf             5743388895069997289840246874578748963579888877999500
Q T0590            79 VRFKDFSENATSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDSDS  130 (137)
Q Consensus        79 v~Ftd~s~~~~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs~t  130 (137)
                      +.+-.+..+...+.||   |....+..     ..+|.|++++.+.+.+|...
T Consensus        56 ~~~g~~~~G~~~f~WD---G~d~~G~~-----~~~G~Y~v~v~a~~~~g~~~   99 (138)
T 3c12_A           56 LSVPASAAGEVSFAWD---GTDANGNR-----MAAGKYGITATQTDTAGAKS   99 (138)
T ss_dssp             EEEEESSSEEEEEEEC---SBCTTSCB-----CCSEEEEEEEEEEETTCCEE
T ss_pred             EECCCCCCCEEEEEEE---CCCCCCCC-----CCCCCEEEEEEEECCCCCEE
T ss_conf             8438757855999981---64578983-----89976899999995899858


No 19 
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ectodomain, metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=54.10  E-value=3.4  Score=18.47  Aligned_cols=20  Identities=15%  Similarity=0.522  Sum_probs=12.4

Q ss_pred             EEECCCCCEEEEEEEECCCC
Q ss_conf             78748963579888877999
Q T0590           108 HTFFNEGEYIVSLIVSNEND  127 (137)
Q Consensus       108 htY~~~G~YtVtLtvtn~~G  127 (137)
                      ..|...|.|.++++|+|..|
T Consensus       505 ~~~~~~~~y~l~V~atD~~~  524 (546)
T 1l3w_A          505 TQQLKKGDYSIYVLLSDAQN  524 (546)
T ss_dssp             SSCCCSSCBCCEEECCSSSC
T ss_pred             CCCCCCCEEEEEEEEEECCC
T ss_conf             98667758999999998998


No 20 
>2wcp_A Cadherin-23, otocadherin; cell adhesion, hearing, deafness; 1.98A {Mus musculus} PDB: 2whv_A 2wd0_A
Probab=53.16  E-value=8.9  Score=16.26  Aligned_cols=59  Identities=19%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             CCEEEEECCCCC-EEEEEECCCCCCC---CCCCC------CEEECCCCCEEEEEEEECCCCC----EEEEEEE
Q ss_conf             515743388895-0699972898402---46874------5787489635798888779995----0057887
Q T0590            77 LSVRFKDFSENA-TSRLWMFGDGNTS---DSPSP------LHTFFNEGEYIVSLIVSNENDS----DSASVTI  135 (137)
Q Consensus        77 l~v~Ftd~s~~~-~~~~WdFGDG~~s---t~~np------~htY~~~G~YtVtLtvtn~~Gs----~t~t~tV  135 (137)
                      +.+..+|.+.+. ..+.+.+.++...   ...+-      .--|..-+.|.++++|+|..+.    .+.+++|
T Consensus       130 ~~~~a~D~D~~~~~~i~y~i~~~~~~f~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~s~~~~v~I  202 (214)
T 2wcp_A          130 FIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAI  202 (214)
T ss_dssp             EECCEECCSSGGGGCEEEEESSCCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEE
T ss_pred             EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEE
T ss_conf             6778776998888726788559851470128988688678789032877999999998998987378999999


No 21 
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=50.26  E-value=8.2  Score=16.45  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=29.7

Q ss_pred             CEEECCCCCCCCCEEEEECCCCC--EEE--EEECCCC--CCCCCCCCCEEECCCCCEEEEEE
Q ss_conf             03311477548515743388895--069--9972898--40246874578748963579888
Q T0590            66 FTSDITEGFAPLSVRFKDFSENA--TSR--LWMFGDG--NTSDSPSPLHTFFNEGEYIVSLI  121 (137)
Q Consensus        66 f~~~~~~g~~pl~v~Ftd~s~~~--~~~--~WdFGDG--~~st~~np~htY~~~G~YtVtLt  121 (137)
                      |........++.+|+|...+...  ...  .+..+..  .....+..+++|..+|+|..--+
T Consensus        18 F~P~~ltV~~GDTV~f~n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~Y~C~   79 (123)
T 1pmy_A           18 FDPALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA   79 (123)
T ss_dssp             EESSEEEECTTCEEEEECSSSSCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS
T ss_pred             EECCEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEC
T ss_conf             96888999699989998789886337425677654443223532110475368817999957


No 22 
>3erx_A Pseudoazurin; copper protein, high-resolution,, copper, electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A
Probab=41.77  E-value=7.3  Score=16.71  Aligned_cols=52  Identities=12%  Similarity=-0.093  Sum_probs=25.4

Q ss_pred             CCCCCCCCEEEEECCCCCEEE------EEECCCCCCCCCCCCCEEECCCCCEEEEEEE
Q ss_conf             477548515743388895069------9972898402468745787489635798888
Q T0590            71 TEGFAPLSVRFKDFSENATSR------LWMFGDGNTSDSPSPLHTFFNEGEYIVSLIV  122 (137)
Q Consensus        71 ~~g~~pl~v~Ftd~s~~~~~~------~WdFGDG~~st~~np~htY~~~G~YtVtLtv  122 (137)
                      -...++.+|.|.+.+.....-      ...+..........-+|+|..+|+|.---++
T Consensus        23 itI~~GDtV~f~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~Y~Y~C~p   80 (123)
T 3erx_A           23 VRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCTP   80 (123)
T ss_dssp             EEECTTEEEEEEESSTTCCCEECTTSSCTTCCCCBCCTTCCEEEEECSCEEEEEECGG
T ss_pred             EEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEE
T ss_conf             9986999899970777872463257787532222335783268613579639999654


No 23 
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=40.52  E-value=14  Score=15.15  Aligned_cols=19  Identities=26%  Similarity=0.195  Sum_probs=13.5

Q ss_pred             CCCCCEEECCCCCEEEEEE
Q ss_conf             6874578748963579888
Q T0590           103 SPSPLHTFFNEGEYIVSLI  121 (137)
Q Consensus       103 ~~np~htY~~~G~YtVtLt  121 (137)
                      ++.-+|+|..||+|.---+
T Consensus        66 g~t~~~tf~~~G~y~Y~C~   84 (98)
T 1pcs_A           66 GESFTSTFTEPGTYTYYCE   84 (98)
T ss_dssp             TCEEEEECCSCEEEEEECG
T ss_pred             CCEEEEEECCCEEEEEECC
T ss_conf             9537998078847999847


No 24 
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans}
Probab=38.74  E-value=6.8  Score=16.86  Aligned_cols=50  Identities=20%  Similarity=0.156  Sum_probs=24.5

Q ss_pred             CCCCCCCCEEEEECCCCC--EEEE--EECCCCCC--CCCCCCCEEECCCCCEEEEE
Q ss_conf             477548515743388895--0699--97289840--24687457874896357988
Q T0590            71 TEGFAPLSVRFKDFSENA--TSRL--WMFGDGNT--SDSPSPLHTFFNEGEYIVSL  120 (137)
Q Consensus        71 ~~g~~pl~v~Ftd~s~~~--~~~~--WdFGDG~~--st~~np~htY~~~G~YtVtL  120 (137)
                      ....++.+|.|.+.+.+.  ....  +.++....  ...+.-+|+|..||+|.---
T Consensus        24 itI~~GdTV~w~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C   79 (124)
T 3ef4_A           24 VKVEAGDTVKFVPTDKSHNAESVREVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKC   79 (124)
T ss_dssp             EEECTTCEEEEECSSSSCCCEECTTTSCTTSCCCBCCTTCCEEEECCSSEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEE
T ss_conf             99889998999778988743741576666655445554500234414774799980


No 25 
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=33.98  E-value=18  Score=14.56  Aligned_cols=52  Identities=13%  Similarity=-0.030  Sum_probs=28.7

Q ss_pred             CCCCCCCEEEEECCCCCEEEEEECC--------CCCCCCCCCCCEEECCCCCEEEEEEEE
Q ss_conf             7754851574338889506999728--------984024687457874896357988887
Q T0590            72 EGFAPLSVRFKDFSENATSRLWMFG--------DGNTSDSPSPLHTFFNEGEYIVSLIVS  123 (137)
Q Consensus        72 ~g~~pl~v~Ftd~s~~~~~~~WdFG--------DG~~st~~np~htY~~~G~YtVtLtvt  123 (137)
                      ...++.+|.|.+.+...-.-....+        .+....+...+++|.++|+|.....+.
T Consensus        37 ~v~~GdtV~~~N~d~~~H~v~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~y~C~~H   96 (106)
T 1id2_A           37 TIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTPH   96 (106)
T ss_dssp             EECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSSC
T ss_pred             EECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCC
T ss_conf             989999999998999974799847888765333354589966889736883899982489


No 26 
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=32.78  E-value=19  Score=14.45  Aligned_cols=13  Identities=23%  Similarity=0.652  Sum_probs=5.4

Q ss_pred             CCCEEEEEEEECC
Q ss_conf             9635798888779
Q T0590           113 EGEYIVSLIVSNE  125 (137)
Q Consensus       113 ~G~YtVtLtvtn~  125 (137)
                      .+.|+++++|+|.
T Consensus       558 ~~~y~l~V~A~D~  570 (880)
T 1q55_A          558 NNTYTVIMLVTDD  570 (880)
T ss_dssp             SSCCEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
T ss_conf             6679999999989


No 27 
>1j83_A Endo-1,4-beta glucanase ENGF; carbohydrate binding module, hydrolase; 1.70A {Clostridium cellulovorans} SCOP: b.18.1.12 PDB: 1j84_A*
Probab=32.32  E-value=7.8  Score=16.54  Aligned_cols=19  Identities=21%  Similarity=0.438  Sum_probs=13.5

Q ss_pred             EECCCCCEEEEEEEECCCC
Q ss_conf             8748963579888877999
Q T0590           109 TFFNEGEYIVSLIVSNEND  127 (137)
Q Consensus       109 tY~~~G~YtVtLtvtn~~G  127 (137)
                      .-..-|.|...||.+..+.
T Consensus       124 ~~q~DG~YKA~LTIt~~ds  142 (180)
T 1j83_A          124 VAQTDGTYKATLTISTNDS  142 (180)
T ss_dssp             EECTTSCEEEEEEEETTTC
T ss_pred             EECCCCCEEEEEEECCCCC
T ss_conf             1247981789999636668


No 28 
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=31.90  E-value=19  Score=14.48  Aligned_cols=20  Identities=20%  Similarity=0.147  Sum_probs=13.9

Q ss_pred             CCCCCEEECCCCCEEEEEEE
Q ss_conf             68745787489635798888
Q T0590           103 SPSPLHTFFNEGEYIVSLIV  122 (137)
Q Consensus       103 ~~np~htY~~~G~YtVtLtv  122 (137)
                      ...-++++.+||+|..--++
T Consensus        70 ~~~~~~tf~~~G~y~y~C~~   89 (102)
T 1kdj_A           70 EPSFKAKVSTPGTYTFYCTP   89 (102)
T ss_dssp             BCEEEECCCSCEEEEEECST
T ss_pred             CCEEEEEECCCEEEEEEECC
T ss_conf             74799994898679999587


No 29 
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=27.00  E-value=25  Score=13.89  Aligned_cols=17  Identities=24%  Similarity=0.174  Sum_probs=11.6

Q ss_pred             CCCEEECCCCCEEEEEE
Q ss_conf             74578748963579888
Q T0590           105 SPLHTFFNEGEYIVSLI  121 (137)
Q Consensus       105 np~htY~~~G~YtVtLt  121 (137)
                      .-++++..||+|.---+
T Consensus        69 t~~~~f~~~G~y~y~C~   85 (99)
T 1plc_A           69 TFEVALSNKGEYSFYCS   85 (99)
T ss_dssp             EEEEECCSCEEEEEECG
T ss_pred             EEEEEECCCCEEEEEEC
T ss_conf             69999657862999807


No 30 
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation constants, metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=26.60  E-value=25  Score=13.85  Aligned_cols=26  Identities=15%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             CCCCCEEEEEEEECCCC---CEEEEEEEE
Q ss_conf             48963579888877999---500578876
Q T0590           111 FNEGEYIVSLIVSNEND---SDSASVTIR  136 (137)
Q Consensus       111 ~~~G~YtVtLtvtn~~G---s~t~t~tV~  136 (137)
                      -.+|.|+|.-.|.-.+|   +.+-+.+||
T Consensus        74 l~~G~YtV~wrvvs~DGH~v~G~~~F~Vk  102 (102)
T 2c9r_A           74 LTAGTYKVDWRAVSSDTFPITGSVTFKVK  102 (102)
T ss_dssp             CCSEEEEEEEEECCTTCCCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEECCCCEECCEEEEEEC
T ss_conf             78733999999996689865377998989


No 31 
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=24.48  E-value=27  Score=13.63  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=25.4

Q ss_pred             CCCCCCCCCEEECC--CCCEEEEEEEECCCC-CEEEEEEEE
Q ss_conf             40246874578748--963579888877999-500578876
Q T0590            99 NTSDSPSPLHTFFN--EGEYIVSLIVSNEND-SDSASVTIR  136 (137)
Q Consensus        99 ~~st~~np~htY~~--~G~YtVtLtvtn~~G-s~t~t~tV~  136 (137)
                      ..+-.+||..+|.-  .+.=+++++..|+.| +.+.+..|+
T Consensus        65 ~~svS~NP~~~F~~~~~~~g~l~v~~~Dn~G~~~~~~~~i~  105 (107)
T 1v8h_A           65 GPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLE  105 (107)
T ss_dssp             CSSCCSSCEEEEEEECCSCEEEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEEEE
T ss_conf             78523797599997269884699999989898899999999


No 32 
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.82  E-value=30  Score=13.45  Aligned_cols=50  Identities=14%  Similarity=-0.006  Sum_probs=26.5

Q ss_pred             CCCCCCEEEEECCCCCEEEEEEC---CCC-----CCCCCCCCCEEECCCCCEEEEEEE
Q ss_conf             75485157433888950699972---898-----402468745787489635798888
Q T0590            73 GFAPLSVRFKDFSENATSRLWMF---GDG-----NTSDSPSPLHTFFNEGEYIVSLIV  122 (137)
Q Consensus        73 g~~pl~v~Ftd~s~~~~~~~WdF---GDG-----~~st~~np~htY~~~G~YtVtLtv  122 (137)
                      ..++.+|.|.+.+...-...=+.   +++     ....++.-+++|.+||+|...-.+
T Consensus        64 V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~~~~~~~~~~~~~tf~~~G~y~y~C~~  121 (132)
T 3c75_A           64 IKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP  121 (132)
T ss_dssp             ECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS
T ss_pred             ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC
T ss_conf             8999999999899885018962676775455666758997489977899899998179


No 33 
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=21.51  E-value=32  Score=13.30  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=19.5

Q ss_pred             CCCCCEEEEEEEECCCC---CEEEEEEEE
Q ss_conf             48963579888877999---500578876
Q T0590           111 FNEGEYIVSLIVSNEND---SDSASVTIR  136 (137)
Q Consensus       111 ~~~G~YtVtLtvtn~~G---s~t~t~tV~  136 (137)
                      -.+|.|+|.-.|-..+|   +.+-..+||
T Consensus        76 L~~G~YtV~wrvvs~DGH~v~G~~~FtVk  104 (104)
T 1lyq_A           76 LPAGTYRVDWRAVSSDTHPITGNYTFTVK  104 (104)
T ss_dssp             CCSEEEEEEEEECCTTSCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEECCCCEECCEEEEEEC
T ss_conf             89825999999981589865146999989


No 34 
>1pmh_X Cscbm27-1, beta-1,4-mannanase; jellyroll beta-sandwich, hydrolase; HET: MAN BMA; 1.06A {Caldicellulosiruptor saccharolyticus} SCOP: b.18.1.18 PDB: 1pmj_X
Probab=20.92  E-value=24  Score=13.98  Aligned_cols=16  Identities=6%  Similarity=-0.105  Sum_probs=8.4

Q ss_pred             CCCCEEEEEEEECCCC
Q ss_conf             8963579888877999
Q T0590           112 NEGEYIVSLIVSNEND  127 (137)
Q Consensus       112 ~~G~YtVtLtvtn~~G  127 (137)
                      .-|.|-..++++...+
T Consensus       132 ~~g~~y~~~~i~~~~~  147 (185)
T 1pmh_X          132 INGKDYTVIHKAFAIP  147 (185)
T ss_dssp             ETTEEEEEEEEEEECC
T ss_pred             ECCCCEEEEEEEECCC
T ss_conf             7784169999984158


Done!