Query T0590 MaR143A, , 137 residues Match_columns 137 No_of_seqs 127 out of 1654 Neff 6.5 Searched_HMMs 22458 Date Mon Jul 5 08:56:25 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0590.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0590.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1l0q_A Surface layer protein; 99.9 6.1E-23 2.7E-27 140.4 8.2 81 56-136 299-381 (391) 2 2c4x_A Endoglucanase, ctcel9D- 99.8 1.6E-21 7.1E-26 132.8 8.5 82 55-136 3-92 (260) 3 1wgo_A VPS10 domain-containing 99.7 1.4E-17 6.1E-22 111.7 7.7 58 79-136 52-116 (123) 4 1b4r_A Protein (PKD1_human); P 99.6 9.7E-16 4.3E-20 101.8 8.0 65 72-136 9-77 (80) 5 2yrl_A KIAA1837 protein; PKD d 98.8 5.3E-09 2.4E-13 65.7 5.0 76 61-136 6-94 (102) 6 2e7m_A Protein KIAA0319; PKD d 96.8 0.00021 9.1E-09 41.1 1.0 53 84-136 42-104 (113) 7 2kpn_A Bacillolysin; solution 92.4 0.11 4.7E-06 26.5 4.0 28 108-135 53-81 (103) 8 1edq_A Chitinase A; beta-alpha 88.7 0.56 2.5E-05 22.7 4.8 63 73-135 35-107 (540) 9 2hz6_A Endoplasmic reticulum t 87.3 0.11 4.9E-06 26.5 0.5 66 59-124 283-352 (369) 10 2oz4_A Intercellular adhesion 80.6 2.1 9.3E-05 19.6 4.7 59 74-136 202-261 (265) 11 3b9e_A Chitinase A; TIM-barrel 77.5 1.6 7.2E-05 20.2 3.3 31 105-135 77-108 (584) 12 1w0n_A Endo-1,4-beta-xylanase 77.3 1 4.5E-05 21.3 2.2 36 92-128 84-119 (131) 13 1b3i_A PETE protein, protein ( 64.4 5.6 0.00025 17.3 4.0 23 99-121 61-83 (97) 14 1bxv_A Plastocyanin; copper pr 62.0 3.7 0.00016 18.3 2.4 50 73-122 23-78 (91) 15 1paz_A Pseudoazurin precursor; 60.6 2.3 0.0001 19.4 1.2 54 66-119 18-77 (123) 16 2ux6_A Pseudoazurin; type-1 co 58.8 2.8 0.00013 18.9 1.4 54 66-119 18-77 (122) 17 2ov0_A Amicyanin; beta-sandwic 54.8 6.8 0.0003 16.9 2.7 50 73-122 37-94 (105) 18 3c12_A FLGD, flagellar protein 54.4 8.5 0.00038 16.4 5.9 44 79-130 56-99 (138) 19 1l3w_A EP-cadherin, C-cadherin 54.1 3.4 0.00015 18.5 1.1 20 108-127 505-524 (546) 20 2wcp_A Cadherin-23, otocadheri 53.2 8.9 0.0004 16.3 3.1 59 77-135 130-202 (214) 21 1pmy_A Pseudoazurin; electron 50.3 8.2 0.00036 16.4 2.6 56 66-121 18-79 (123) 22 3erx_A Pseudoazurin; copper pr 41.8 7.3 0.00032 16.7 1.2 52 71-122 23-80 (123) 23 1pcs_A Plastocyanin; electron 40.5 14 0.00064 15.1 2.7 19 103-121 66-84 (98) 24 3ef4_A Pseudoazurin, blue copp 38.7 6.8 0.0003 16.9 0.7 50 71-120 24-79 (124) 25 1id2_A Amicyanin; beta barrel, 34.0 18 0.00082 14.6 2.7 52 72-123 37-96 (106) 26 1q55_A EP-cadherin, C-cadherin 32.8 19 0.00086 14.4 3.4 13 113-125 558-570 (880) 27 1j83_A Endo-1,4-beta glucanase 32.3 7.8 0.00035 16.5 0.2 19 109-127 124-142 (180) 28 1kdj_A Plastocyanin; electron 31.9 19 0.00085 14.5 2.1 20 103-122 70-89 (102) 29 1plc_A Plastocyanin; electron 27.0 25 0.0011 13.9 3.0 17 105-121 69-85 (99) 30 2c9r_A COPC, copper resistance 26.6 25 0.0011 13.8 3.2 26 111-136 74-102 (102) 31 1v8h_A Sulfur oxidation protei 24.5 27 0.0012 13.6 4.4 38 99-136 65-105 (107) 32 3c75_A Amicyanin; copper prote 22.8 30 0.0013 13.4 2.7 50 73-122 64-121 (132) 33 1lyq_A PCOC copper resistance 21.5 32 0.0014 13.3 3.2 26 111-136 76-104 (104) 34 1pmh_X Cscbm27-1, beta-1,4-man 20.9 24 0.0011 14.0 0.9 16 112-127 132-147 (185) No 1 >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta- propeller, PKD superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei s-6} SCOP: b.1.3.1 b.69.2.3 Probab=99.88 E-value=6.1e-23 Score=140.39 Aligned_cols=81 Identities=46% Similarity=0.740 Sum_probs=74.2 Q ss_pred CCCCCCCCCCCEEECCCCCCCCC--EEEEECCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEE Q ss_conf 44333222320331147754851--5743388895069997289840246874578748963579888877999500578 Q T0590 56 HSSPVLPTARFTSDITEGFAPLS--VRFKDFSENATSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASV 133 (137) Q Consensus 56 ~~~~~~p~a~f~~~~~~g~~pl~--v~Ftd~s~~~~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~ 133 (137) ......|.++|.+.++.|.+||. |+|+|.|.++.+|.||||||.++++++|.|+|.++|+|+|+|+|+|+.|++++++ T Consensus 299 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~w~f~dg~~~~~~~~~~~~~~~g~y~v~l~~~~~~~~~~~~~ 378 (391) T 1l0q_A 299 PVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTVRLTVSNSNGTDSQIS 378 (391) T ss_dssp SSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSSCEEEEEEEEEEETTEEEEEEE T ss_pred CCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCEEEE T ss_conf 54455764330653544531352406853389995289999889972663586489968978999999988999640899 Q ss_pred EEE Q ss_conf 876 Q T0590 134 TIR 136 (137) Q Consensus 134 tV~ 136 (137) +|. T Consensus 379 ~~~ 381 (391) T 1l0q_A 379 TVN 381 (391) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 2 >2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate binding module, beta-sandwich proteins; 2.0A {Clostridium thermocellum} PDB: 2c26_A Probab=99.85 E-value=1.6e-21 Score=132.77 Aligned_cols=82 Identities=29% Similarity=0.392 Sum_probs=68.8 Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCEEEE-----ECCCCCEEEEEECCCCCCCCCCC--CCEEECCCCCEEEEEEEECCCC Q ss_conf 4443332223203311477548515743-----38889506999728984024687--4578748963579888877999 Q T0590 55 LHSSPVLPTARFTSDITEGFAPLSVRFK-----DFSENATSRLWMFGDGNTSDSPS--PLHTFFNEGEYIVSLIVSNEND 127 (137) Q Consensus 55 ~~~~~~~p~a~f~~~~~~g~~pl~v~Ft-----d~s~~~~~~~WdFGDG~~st~~n--p~htY~~~G~YtVtLtvtn~~G 127 (137) ..+.+.+|+|.|+++++.+++|++|+|. |.++.+++|.||||||..++.++ ++|+|..+|+|+|+|+|+|+.| T Consensus 3 ~~~~N~~PvA~ft~~~~~~~~~~tv~F~~~~S~D~dg~~~sy~WdFgDG~~st~~~~~~shty~~~G~YtV~LtVtD~~G 82 (260) T 2c4x_A 3 SVPENQAPKAIFTFSPEDPVTDENVVFNASNSIDEDGTIAYYVWDFGDGYEGTSTTPTITYKYKNPGTYKVKLIVTDNQG 82 (260) T ss_dssp --CCCCCCBCCCEEESSSCBTTCCEEEECTTCBCSSSCEEEEEEECSSSCEEEESSSEEEECCSSCEEEEEEEEEEETTS T ss_pred CCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC T ss_conf 48899898889997677778997899971046389999899999919998735227607999377877789999998997 Q ss_pred -CEEEEEEEE Q ss_conf -500578876 Q T0590 128 -SDSASVTIR 136 (137) Q Consensus 128 -s~t~t~tV~ 136 (137) +++++++|. T Consensus 83 ~s~t~t~~V~ 92 (260) T 2c4x_A 83 ASSSFTATIK 92 (260) T ss_dssp CEEEEEEEEE T ss_pred CEEEEEEEEE T ss_conf 2488899999 No 3 >1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1 Probab=99.71 E-value=1.4e-17 Score=111.72 Aligned_cols=58 Identities=26% Similarity=0.236 Sum_probs=49.6 Q ss_pred EEEEECCCCCEEEEEECCCCC-------CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE Q ss_conf 574338889506999728984-------0246874578748963579888877999500578876 Q T0590 79 VRFKDFSENATSRLWMFGDGN-------TSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR 136 (137) Q Consensus 79 v~Ftd~s~~~~~~~WdFGDG~-------~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~ 136 (137) +.+.+.++.+++|.||||||+ ++++++|+|+|..+|+|+|+|+|+|..|+++.++.|. T Consensus 52 ~~~~~~d~~~~sy~WDFGDG~~~~~~~~ts~~~~~~H~y~~~G~Y~Vtltv~n~~gs~t~~~~v~ 116 (123) T 1wgo_A 52 VRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRHRYESPGIYRVSVRAENTAGHDEAVLFVQ 116 (123) T ss_dssp EEESSCCSCSCEEEEECSSSCEEEEESHHHHTCCEEECCSSCSCEEEEEEEECSSCEEEEEEEEC T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEEEEEE T ss_conf 83348999836899992899610156446588784798850895589999997999688999999 No 4 >1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1 Probab=99.62 E-value=9.7e-16 Score=101.80 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=52.7 Q ss_pred CCCCCCCEEEEECC-CCCEEEEEECCCCCC---CCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE Q ss_conf 77548515743388-895069997289840---246874578748963579888877999500578876 Q T0590 72 EGFAPLSVRFKDFS-ENATSRLWMFGDGNT---SDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR 136 (137) Q Consensus 72 ~g~~pl~v~Ftd~s-~~~~~~~WdFGDG~~---st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~ 136 (137) ..+++..++|.+.+ .++.+|.||||||+. +.+.+++|+|..+|+|+|+|+|+|..|+...++.|. T Consensus 9 p~~~G~~v~F~~~ss~~~~sy~WdFGDG~~~~~~~~~~~~hty~~~G~Y~Vtltv~~~~g~~~~~~~V~ 77 (80) T 1b4r_A 9 PLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALLGTDVQ 77 (80) T ss_dssp CCBSSEEEEEEEESCSSCSEEEEECCSSCCEEEEETTEEEEEECSSEEEEEEEEEECSSCEEEEEEEEE T ss_pred CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCEECCCCEEEEECCCCEEEEEEEEECCCCEEEEEEEEE T ss_conf 746997789996589994289999689985623779747999641887999999993997299889999 No 5 >2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=98.77 E-value=5.3e-09 Score=65.67 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=50.4 Q ss_pred CCCCCCEEECCCCCCCCCEEEEEC----CCCCEEEEEECCCCCC------CCCCCCCEEECCCCCEEEEEEEECCCC--- Q ss_conf 222320331147754851574338----8895069997289840------246874578748963579888877999--- Q T0590 61 LPTARFTSDITEGFAPLSVRFKDF----SENATSRLWMFGDGNT------SDSPSPLHTFFNEGEYIVSLIVSNEND--- 127 (137) Q Consensus 61 ~p~a~f~~~~~~g~~pl~v~Ftd~----s~~~~~~~WdFGDG~~------st~~np~htY~~~G~YtVtLtvtn~~G--- 127 (137) .|+|+.-.+.+......+|.|... ..++++|.|.|.+|-. .+..+++|+|..+|+|+++|+|+|..| T Consensus 6 ~p~A~AG~d~~v~~p~~~vtL~gs~S~d~~~~~ty~W~~~~gp~~~~~~~~~~~~~~~t~~~~Gty~~~LtVtD~~G~s~ 85 (102) T 2yrl_A 6 SGQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQS 85 (102) T ss_dssp CCSCCCCSCEEEETTCCEEEEECCTTCSSSCBCCCCEEEEESCTTCEEESTTSSEEEEESCCSSEEEEEEEEEBTTCCEE T ss_pred CCCEECCCCEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCEE T ss_conf 98078589829846898799962713799985899999877997107614787558887578848999999996999857 Q ss_pred CEEEEEEEE Q ss_conf 500578876 Q T0590 128 SDSASVTIR 136 (137) Q Consensus 128 s~t~t~tV~ 136 (137) +++.+++|+ T Consensus 86 s~~~~VtV~ 94 (102) T 2yrl_A 86 QSSVNVIVK 94 (102) T ss_dssp EEEEEEEEE T ss_pred EEEEEEEEC T ss_conf 807999999 No 6 >2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=96.84 E-value=0.00021 Score=41.10 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=35.4 Q ss_pred CCCCCEEEEEECCCC---CCC-----CCCCCCEEECCCCCEEEEEEEECCCCC--EEEEEEEE Q ss_conf 888950699972898---402-----468745787489635798888779995--00578876 Q T0590 84 FSENATSRLWMFGDG---NTS-----DSPSPLHTFFNEGEYIVSLIVSNENDS--DSASVTIR 136 (137) Q Consensus 84 ~s~~~~~~~WdFGDG---~~s-----t~~np~htY~~~G~YtVtLtvtn~~Gs--~t~t~tV~ 136 (137) ....+.+|.|.+-.| ... ....+......+|+|..+|+|+|..++ ++.+++|+ T Consensus 42 ~~~~~ltY~W~~vsgP~~~~~~~~~~~~~~~~~s~~~~G~Y~f~LtVsD~~~~~~d~V~VtV~ 104 (113) T 2e7m_A 42 PVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGLYVFKVTVSSENAFGEGFVNVTVK 104 (113) T ss_dssp CSSCCCCCBCCEEECCTTCCCCCCTTSSSEEEECSCCSEEEEECCEEEETTEEEECCEEEEEE T ss_pred CCCCEEEEEEEECCCCCCCCCEECCCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEE T ss_conf 899858999897348887511004687636862025550799999998999848737999996 No 7 >2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open target, NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579} Probab=92.44 E-value=0.11 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=21.7 Q ss_pred EEECCCCCEEEEEEEECCCC-CEEEEEEE Q ss_conf 78748963579888877999-50057887 Q T0590 108 HTFFNEGEYIVSLIVSNEND-SDSASVTI 135 (137) Q Consensus 108 htY~~~G~YtVtLtvtn~~G-s~t~t~tV 135 (137) .-..++|+|.|+.+|+|..| ..+++++| T Consensus 53 vd~~~~G~Y~vtYtvtD~~Gn~~t~~~tV 81 (103) T 2kpn_A 53 VDTTKAGTYVLTYTVTDSKGHEVTAKQTV 81 (103) T ss_dssp CCSSSCEEEEEEEEEECTTSCEEEEEEEE T ss_pred CCCCCEEEEEEEEEEEECCCCEEEEEEEE T ss_conf 67786034999999997999999999999 No 8 >1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A* 1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A* Probab=88.66 E-value=0.56 Score=22.69 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=37.6 Q ss_pred CCCCCCEEEEECCCC-CEEEEEECCCCCC------CCCCCCCEEECCCCCEEEEEEEECCCCC-EE--EEEEE Q ss_conf 754851574338889-5069997289840------2468745787489635798888779995-00--57887 Q T0590 73 GFAPLSVRFKDFSEN-ATSRLWMFGDGNT------SDSPSPLHTFFNEGEYIVSLIVSNENDS-DS--ASVTI 135 (137) Q Consensus 73 g~~pl~v~Ftd~s~~-~~~~~WdFGDG~~------st~~np~htY~~~G~YtVtLtvtn~~Gs-~t--~t~tV 135 (137) ..++.+|.+.--|++ ...+.=-|.+-.. .....+.++|.++|.|.+++++.|..|+ .+ .+++| T Consensus 35 ~~~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~s~~~~~~v 107 (540) T 1edq_A 35 NAADVSVSWNLWNGDTGTTAKVLLNGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVV 107 (540) T ss_dssp SSEEEEEEEECCSSCCCSEEEEEETTEEEEEEECCSSEEEEEEEECSCEEEEEEEEEEETTEEEECCCEEEEE T ss_pred CCCEEEEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEE T ss_conf 3627888887522898707999989879996047887505888606894699999997799875566548999 No 9 >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Probab=87.34 E-value=0.11 Score=26.48 Aligned_cols=66 Identities=18% Similarity=0.054 Sum_probs=50.3 Q ss_pred CCCCCCCCEEECCCCCCCCCEEEEECCCCC--EEEEEECCCCC--CCCCCCCCEEECCCCCEEEEEEEEC Q ss_conf 332223203311477548515743388895--06999728984--0246874578748963579888877 Q T0590 59 PVLPTARFTSDITEGFAPLSVRFKDFSENA--TSRLWMFGDGN--TSDSPSPLHTFFNEGEYIVSLIVSN 124 (137) Q Consensus 59 ~~~p~a~f~~~~~~g~~pl~v~Ftd~s~~~--~~~~WdFGDG~--~st~~np~htY~~~G~YtVtLtvtn 124 (137) ...+.+.+...+..|..++.+.|.|.+... .++.|+|.-+. .+..+++.+.|...|.|.+.+++.- T Consensus 283 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~p~~~~~ 352 (369) T 2hz6_A 283 VAVVPRGSTLPLLEGPQTDGVTIGDKGESVITPSTDVKFDPGLKSKNKLNYLRNYWLLIGHHETPLSAST 352 (369) T ss_dssp CCBC--------------------------------------------------CTTTCBBCBCC----- T ss_pred CCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCH T ss_conf 3142167775556787776511025776645666334357876443654465544266532678723200 No 10 >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerization, cell adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Probab=80.57 E-value=2.1 Score=19.62 Aligned_cols=59 Identities=12% Similarity=-0.062 Sum_probs=37.7 Q ss_pred CCCCCEEEEECCCCCEEEEEECCCCC-CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE Q ss_conf 54851574338889506999728984-0246874578748963579888877999500578876 Q T0590 74 FAPLSVRFKDFSENATSRLWMFGDGN-TSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR 136 (137) Q Consensus 74 ~~pl~v~Ftd~s~~~~~~~WdFGDG~-~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~ 136 (137) .+-|++.+... -...+.|-+.+.. .....-...+....|.|+.. |+|..|+.++..+|+ T Consensus 202 ~~~l~C~~~g~--P~p~v~W~k~g~~~~~~~~~~~v~~~d~G~Y~C~--a~N~~G~~~~~~~l~ 261 (265) T 2oz4_A 202 QQTPMCQAWGN--PLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCR--ARSTQGEVTREVTVN 261 (265) T ss_dssp EECCCCCCEEE--SCCEEEEEETTTEECCTTSCEECCGGGCEEEEEE--EEETTEEEEEEEEEE T ss_pred EEEEEEECCCC--CCCEEEEEECCEECCCCCCEEEECHHHCEEEEEE--EEECCCEEEEEEEEE T ss_conf 39999995889--9999999999939478894697102409999999--992998099999999 No 11 >3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A Probab=77.50 E-value=1.6 Score=20.23 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.4 Q ss_pred CCCEEECCCCCEEEEEEEECCCCC-EEEEEEE Q ss_conf 745787489635798888779995-0057887 Q T0590 105 SPLHTFFNEGEYIVSLIVSNENDS-DSASVTI 135 (137) Q Consensus 105 np~htY~~~G~YtVtLtvtn~~Gs-~t~t~tV 135 (137) ..++.|.+.|.|.+++++.|..|+ .+.++.| T Consensus 77 ~~~~~~~~~g~~~~~~~~~~~~g~s~s~~~~~ 108 (584) T 3b9e_A 77 TASFEYGQGGLYQMEIEACDATGCSKSAPVEI 108 (584) T ss_dssp EEEEEECCCEEEEEEEEEECSSCEEECCCEEE T ss_pred EEEEECCCCCEEEEEEEEECCCCCCCCCCCCE T ss_conf 89884057834899999976888766786014 No 12 >1w0n_A Endo-1,4-beta-xylanase D; hydrolase, carbohydrate-binding module, carbohydrate binding, CBM36; 0.8A {Paenibacillus polymyxa} SCOP: b.18.1.28 PDB: 1ux7_A Probab=77.26 E-value=1 Score=21.33 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=29.4 Q ss_pred EEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCC Q ss_conf 9972898402468745787489635798888779995 Q T0590 92 LWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDS 128 (137) Q Consensus 92 ~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs 128 (137) ...|+ |+..+++.....|...|.++|.|.|+.++|+ T Consensus 84 tfyf~-gt~P~~~ti~Nv~~~tG~~~velvvtaDnGt 119 (131) T 1w0n_A 84 SFNFT-GKTPTVQTLSNITHATGDQEIKLALTSDDGT 119 (131) T ss_dssp EEEEE-SSSCEEEEEEEEECCCEEEEEEEEESCSSSS T ss_pred EEEEC-CCCCEEEEECCCCCCCCCEEEEEEEECCCCC T ss_conf 89955-8564478801112167977899999868971 No 13 >1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Probab=64.36 E-value=5.6 Score=17.34 Aligned_cols=23 Identities=13% Similarity=-0.024 Sum_probs=15.9 Q ss_pred CCCCCCCCCEEECCCCCEEEEEE Q ss_conf 40246874578748963579888 Q T0590 99 NTSDSPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 99 ~~st~~np~htY~~~G~YtVtLt 121 (137) ....++.-+|+|.++|+|.---+ T Consensus 61 ~~~~g~~~~~tf~~~G~Y~Y~C~ 83 (97) T 1b3i_A 61 AIAPGSFYSVTLGTPGTYSFYCT 83 (97) T ss_dssp CCSCSCCEEEECCSCSEEEEECS T ss_pred CCCCCEEEEEECCCCEEEEEEEC T ss_conf 56864589997788878999925 No 14 >1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus pcc 7942} SCOP: b.6.1.1 PDB: 1bxu_A Probab=62.00 E-value=3.7 Score=18.30 Aligned_cols=50 Identities=16% Similarity=-0.037 Sum_probs=25.2 Q ss_pred CCCCCCEEEEECCCCCEEEEEE------CCCCCCCCCCCCCEEECCCCCEEEEEEE Q ss_conf 7548515743388895069997------2898402468745787489635798888 Q T0590 73 GFAPLSVRFKDFSENATSRLWM------FGDGNTSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 73 g~~pl~v~Ftd~s~~~~~~~Wd------FGDG~~st~~np~htY~~~G~YtVtLtv 122 (137) ..++.+|.|.+.+.......=+ |.++....++.-+|+|..||+|...-+. T Consensus 23 V~~GdtV~~~n~~~~~h~~~~~~~~~~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~ 78 (91) T 1bxv_A 23 IQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGETFEATFSEPGTYTYYCEP 78 (91) T ss_dssp ECTTCEEEEEECSSCCEEEEETTCGGGCEEEEECSTTCEEEEECCSCEEEEEECTT T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECC T ss_conf 98999999998998862388447553455655617997699996238879999687 No 15 >1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Probab=60.57 E-value=2.3 Score=19.35 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=27.6 Q ss_pred CEEECCCCCCCCCEEEEECCCC--CEEE--EEECCCCCCC--CCCCCCEEECCCCCEEEE Q ss_conf 0331147754851574338889--5069--9972898402--468745787489635798 Q T0590 66 FTSDITEGFAPLSVRFKDFSEN--ATSR--LWMFGDGNTS--DSPSPLHTFFNEGEYIVS 119 (137) Q Consensus 66 f~~~~~~g~~pl~v~Ftd~s~~--~~~~--~WdFGDG~~s--t~~np~htY~~~G~YtVt 119 (137) |....-...++.+|.|...+.+ .... .|..+..... ..+..+|+|..+|+|.-- T Consensus 18 F~P~~i~I~~GdTV~f~n~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~ 77 (123) T 1paz_A 18 FEPAYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVK 77 (123) T ss_dssp EESSEEEECTTCEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEE T ss_pred EECCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEE T ss_conf 857889988999899998999723774167576653222224686337960688069998 No 16 >2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Probab=58.84 E-value=2.8 Score=18.92 Aligned_cols=54 Identities=17% Similarity=0.014 Sum_probs=30.1 Q ss_pred CEEECCCCCCCCCEEEEECCCCC--EEEE--EECCCCCC--CCCCCCCEEECCCCCEEEE Q ss_conf 03311477548515743388895--0699--97289840--2468745787489635798 Q T0590 66 FTSDITEGFAPLSVRFKDFSENA--TSRL--WMFGDGNT--SDSPSPLHTFFNEGEYIVS 119 (137) Q Consensus 66 f~~~~~~g~~pl~v~Ftd~s~~~--~~~~--WdFGDG~~--st~~np~htY~~~G~YtVt 119 (137) |........++-+|.|.+.+... .... ...|+... ...+.-+|+|..+|+|..- T Consensus 18 F~P~~ltI~~GdTV~w~n~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~Y~Y~ 77 (122) T 2ux6_A 18 FEPASLKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVK 77 (122) T ss_dssp EESSEEEECTTEEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCCEEEEECSCEEEEEE T ss_pred EECCEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEE T ss_conf 847889987999899999998842202024476774333456786378971678169997 No 17 >2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A 2gba_A ... Probab=54.76 E-value=6.8 Score=16.88 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=26.5 Q ss_pred CCCCCCEEEEECCCCCEEEEEECC---C-----CCCCCCCCCCEEECCCCCEEEEEEE Q ss_conf 754851574338889506999728---9-----8402468745787489635798888 Q T0590 73 GFAPLSVRFKDFSENATSRLWMFG---D-----GNTSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 73 g~~pl~v~Ftd~s~~~~~~~WdFG---D-----G~~st~~np~htY~~~G~YtVtLtv 122 (137) ..++.+|.|.+.+...-.....-+ . +....++.-+++|.+||+|...-.. T Consensus 37 V~~GdtV~~~N~d~~~Hnv~~~~~~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~ 94 (105) T 2ov0_A 37 VKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTP 94 (105) T ss_dssp ECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC T ss_conf 8899999998899886427873775776544555536895479995388389998478 No 18 >3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV} Probab=54.36 E-value=8.5 Score=16.36 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=26.4 Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEE Q ss_conf 5743388895069997289840246874578748963579888877999500 Q T0590 79 VRFKDFSENATSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDSDS 130 (137) Q Consensus 79 v~Ftd~s~~~~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs~t 130 (137) +.+-.+..+...+.|| |....+.. ..+|.|++++.+.+.+|... T Consensus 56 ~~~g~~~~G~~~f~WD---G~d~~G~~-----~~~G~Y~v~v~a~~~~g~~~ 99 (138) T 3c12_A 56 LSVPASAAGEVSFAWD---GTDANGNR-----MAAGKYGITATQTDTAGAKS 99 (138) T ss_dssp EEEEESSSEEEEEEEC---SBCTTSCB-----CCSEEEEEEEEEEETTCCEE T ss_pred EECCCCCCCEEEEEEE---CCCCCCCC-----CCCCCEEEEEEEECCCCCEE T ss_conf 8438757855999981---64578983-----89976899999995899858 No 19 >1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ectodomain, metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Probab=54.10 E-value=3.4 Score=18.47 Aligned_cols=20 Identities=15% Similarity=0.522 Sum_probs=12.4 Q ss_pred EEECCCCCEEEEEEEECCCC Q ss_conf 78748963579888877999 Q T0590 108 HTFFNEGEYIVSLIVSNEND 127 (137) Q Consensus 108 htY~~~G~YtVtLtvtn~~G 127 (137) ..|...|.|.++++|+|..| T Consensus 505 ~~~~~~~~y~l~V~atD~~~ 524 (546) T 1l3w_A 505 TQQLKKGDYSIYVLLSDAQN 524 (546) T ss_dssp SSCCCSSCBCCEEECCSSSC T ss_pred CCCCCCCEEEEEEEEEECCC T ss_conf 98667758999999998998 No 20 >2wcp_A Cadherin-23, otocadherin; cell adhesion, hearing, deafness; 1.98A {Mus musculus} PDB: 2whv_A 2wd0_A Probab=53.16 E-value=8.9 Score=16.26 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=31.1 Q ss_pred CCEEEEECCCCC-EEEEEECCCCCCC---CCCCC------CEEECCCCCEEEEEEEECCCCC----EEEEEEE Q ss_conf 515743388895-0699972898402---46874------5787489635798888779995----0057887 Q T0590 77 LSVRFKDFSENA-TSRLWMFGDGNTS---DSPSP------LHTFFNEGEYIVSLIVSNENDS----DSASVTI 135 (137) Q Consensus 77 l~v~Ftd~s~~~-~~~~WdFGDG~~s---t~~np------~htY~~~G~YtVtLtvtn~~Gs----~t~t~tV 135 (137) +.+..+|.+.+. ..+.+.+.++... ...+- .--|..-+.|.++++|+|..+. .+.+++| T Consensus 130 ~~~~a~D~D~~~~~~i~y~i~~~~~~f~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~s~~~~v~I 202 (214) T 2wcp_A 130 FIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAI 202 (214) T ss_dssp EECCEECCSSGGGGCEEEEESSCCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEE T ss_pred EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEE T ss_conf 6778776998888726788559851470128988688678789032877999999998998987378999999 No 21 >1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Probab=50.26 E-value=8.2 Score=16.45 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=29.7 Q ss_pred CEEECCCCCCCCCEEEEECCCCC--EEE--EEECCCC--CCCCCCCCCEEECCCCCEEEEEE Q ss_conf 03311477548515743388895--069--9972898--40246874578748963579888 Q T0590 66 FTSDITEGFAPLSVRFKDFSENA--TSR--LWMFGDG--NTSDSPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 66 f~~~~~~g~~pl~v~Ftd~s~~~--~~~--~WdFGDG--~~st~~np~htY~~~G~YtVtLt 121 (137) |........++.+|+|...+... ... .+..+.. .....+..+++|..+|+|..--+ T Consensus 18 F~P~~ltV~~GDTV~f~n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~Y~C~ 79 (123) T 1pmy_A 18 FDPALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA 79 (123) T ss_dssp EESSEEEECTTCEEEEECSSSSCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS T ss_pred EECCEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEC T ss_conf 96888999699989998789886337425677654443223532110475368817999957 No 22 >3erx_A Pseudoazurin; copper protein, high-resolution,, copper, electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A Probab=41.77 E-value=7.3 Score=16.71 Aligned_cols=52 Identities=12% Similarity=-0.093 Sum_probs=25.4 Q ss_pred CCCCCCCCEEEEECCCCCEEE------EEECCCCCCCCCCCCCEEECCCCCEEEEEEE Q ss_conf 477548515743388895069------9972898402468745787489635798888 Q T0590 71 TEGFAPLSVRFKDFSENATSR------LWMFGDGNTSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 71 ~~g~~pl~v~Ftd~s~~~~~~------~WdFGDG~~st~~np~htY~~~G~YtVtLtv 122 (137) -...++.+|.|.+.+.....- ...+..........-+|+|..+|+|.---++ T Consensus 23 itI~~GDtV~f~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~Y~Y~C~p 80 (123) T 3erx_A 23 VRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCTP 80 (123) T ss_dssp EEECTTEEEEEEESSTTCCCEECTTSSCTTCCCCBCCTTCCEEEEECSCEEEEEECGG T ss_pred EEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEE T ss_conf 9986999899970777872463257787532222335783268613579639999654 No 23 >1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Probab=40.52 E-value=14 Score=15.15 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=13.5 Q ss_pred CCCCCEEECCCCCEEEEEE Q ss_conf 6874578748963579888 Q T0590 103 SPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 103 ~~np~htY~~~G~YtVtLt 121 (137) ++.-+|+|..||+|.---+ T Consensus 66 g~t~~~tf~~~G~y~Y~C~ 84 (98) T 1pcs_A 66 GESFTSTFTEPGTYTYYCE 84 (98) T ss_dssp TCEEEEECCSCEEEEEECG T ss_pred CCEEEEEECCCEEEEEECC T ss_conf 9537998078847999847 No 24 >3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} Probab=38.74 E-value=6.8 Score=16.86 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=24.5 Q ss_pred CCCCCCCCEEEEECCCCC--EEEE--EECCCCCC--CCCCCCCEEECCCCCEEEEE Q ss_conf 477548515743388895--0699--97289840--24687457874896357988 Q T0590 71 TEGFAPLSVRFKDFSENA--TSRL--WMFGDGNT--SDSPSPLHTFFNEGEYIVSL 120 (137) Q Consensus 71 ~~g~~pl~v~Ftd~s~~~--~~~~--WdFGDG~~--st~~np~htY~~~G~YtVtL 120 (137) ....++.+|.|.+.+.+. .... +.++.... ...+.-+|+|..||+|.--- T Consensus 24 itI~~GdTV~w~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C 79 (124) T 3ef4_A 24 VKVEAGDTVKFVPTDKSHNAESVREVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKC 79 (124) T ss_dssp EEECTTCEEEEECSSSSCCCEECTTTSCTTSCCCBCCTTCCEEEECCSSEEEEEEC T ss_pred EEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEE T ss_conf 99889998999778988743741576666655445554500234414774799980 No 25 >1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Probab=33.98 E-value=18 Score=14.56 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=28.7 Q ss_pred CCCCCCCEEEEECCCCCEEEEEECC--------CCCCCCCCCCCEEECCCCCEEEEEEEE Q ss_conf 7754851574338889506999728--------984024687457874896357988887 Q T0590 72 EGFAPLSVRFKDFSENATSRLWMFG--------DGNTSDSPSPLHTFFNEGEYIVSLIVS 123 (137) Q Consensus 72 ~g~~pl~v~Ftd~s~~~~~~~WdFG--------DG~~st~~np~htY~~~G~YtVtLtvt 123 (137) ...++.+|.|.+.+...-.-....+ .+....+...+++|.++|+|.....+. T Consensus 37 ~v~~GdtV~~~N~d~~~H~v~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~y~C~~H 96 (106) T 1id2_A 37 TIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTPH 96 (106) T ss_dssp EECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSSC T ss_pred EECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCC T ss_conf 989999999998999974799847888765333354589966889736883899982489 No 26 >1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Probab=32.78 E-value=19 Score=14.45 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=5.4 Q ss_pred CCCEEEEEEEECC Q ss_conf 9635798888779 Q T0590 113 EGEYIVSLIVSNE 125 (137) Q Consensus 113 ~G~YtVtLtvtn~ 125 (137) .+.|+++++|+|. T Consensus 558 ~~~y~l~V~A~D~ 570 (880) T 1q55_A 558 NNTYTVIMLVTDD 570 (880) T ss_dssp SSCCEEEEEEEEC T ss_pred CCEEEEEEEEEEC T ss_conf 6679999999989 No 27 >1j83_A Endo-1,4-beta glucanase ENGF; carbohydrate binding module, hydrolase; 1.70A {Clostridium cellulovorans} SCOP: b.18.1.12 PDB: 1j84_A* Probab=32.32 E-value=7.8 Score=16.54 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=13.5 Q ss_pred EECCCCCEEEEEEEECCCC Q ss_conf 8748963579888877999 Q T0590 109 TFFNEGEYIVSLIVSNEND 127 (137) Q Consensus 109 tY~~~G~YtVtLtvtn~~G 127 (137) .-..-|.|...||.+..+. T Consensus 124 ~~q~DG~YKA~LTIt~~ds 142 (180) T 1j83_A 124 VAQTDGTYKATLTISTNDS 142 (180) T ss_dssp EECTTSCEEEEEEEETTTC T ss_pred EECCCCCEEEEEEECCCCC T ss_conf 1247981789999636668 No 28 >1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Probab=31.90 E-value=19 Score=14.48 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=13.9 Q ss_pred CCCCCEEECCCCCEEEEEEE Q ss_conf 68745787489635798888 Q T0590 103 SPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 103 ~~np~htY~~~G~YtVtLtv 122 (137) ...-++++.+||+|..--++ T Consensus 70 ~~~~~~tf~~~G~y~y~C~~ 89 (102) T 1kdj_A 70 EPSFKAKVSTPGTYTFYCTP 89 (102) T ss_dssp BCEEEECCCSCEEEEEECST T ss_pred CCEEEEEECCCEEEEEEECC T ss_conf 74799994898679999587 No 29 >1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Probab=27.00 E-value=25 Score=13.89 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=11.6 Q ss_pred CCCEEECCCCCEEEEEE Q ss_conf 74578748963579888 Q T0590 105 SPLHTFFNEGEYIVSLI 121 (137) Q Consensus 105 np~htY~~~G~YtVtLt 121 (137) .-++++..||+|.---+ T Consensus 69 t~~~~f~~~G~y~y~C~ 85 (99) T 1plc_A 69 TFEVALSNKGEYSFYCS 85 (99) T ss_dssp EEEEECCSCEEEEEECG T ss_pred EEEEEECCCCEEEEEEC T ss_conf 69999657862999807 No 30 >2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation constants, metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A Probab=26.60 E-value=25 Score=13.85 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=20.0 Q ss_pred CCCCCEEEEEEEECCCC---CEEEEEEEE Q ss_conf 48963579888877999---500578876 Q T0590 111 FNEGEYIVSLIVSNEND---SDSASVTIR 136 (137) Q Consensus 111 ~~~G~YtVtLtvtn~~G---s~t~t~tV~ 136 (137) -.+|.|+|.-.|.-.+| +.+-+.+|| T Consensus 74 l~~G~YtV~wrvvs~DGH~v~G~~~F~Vk 102 (102) T 2c9r_A 74 LTAGTYKVDWRAVSSDTFPITGSVTFKVK 102 (102) T ss_dssp CCSEEEEEEEEECCTTCCCEEEEEEEEEC T ss_pred CCCCEEEEEEEEEECCCCEECCEEEEEEC T ss_conf 78733999999996689865377998989 No 31 >1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19 Probab=24.48 E-value=27 Score=13.63 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=25.4 Q ss_pred CCCCCCCCCEEECC--CCCEEEEEEEECCCC-CEEEEEEEE Q ss_conf 40246874578748--963579888877999-500578876 Q T0590 99 NTSDSPSPLHTFFN--EGEYIVSLIVSNEND-SDSASVTIR 136 (137) Q Consensus 99 ~~st~~np~htY~~--~G~YtVtLtvtn~~G-s~t~t~tV~ 136 (137) ..+-.+||..+|.- .+.=+++++..|+.| +.+.+..|+ T Consensus 65 ~~svS~NP~~~F~~~~~~~g~l~v~~~Dn~G~~~~~~~~i~ 105 (107) T 1v8h_A 65 GPSTSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKLE 105 (107) T ss_dssp CSSCCSSCEEEEEEECCSCEEEEEEEEETTSCEEEEEEEEC T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEEEE T ss_conf 78523797599997269884699999989898899999999 No 32 >3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Probab=22.82 E-value=30 Score=13.45 Aligned_cols=50 Identities=14% Similarity=-0.006 Sum_probs=26.5 Q ss_pred CCCCCCEEEEECCCCCEEEEEEC---CCC-----CCCCCCCCCEEECCCCCEEEEEEE Q ss_conf 75485157433888950699972---898-----402468745787489635798888 Q T0590 73 GFAPLSVRFKDFSENATSRLWMF---GDG-----NTSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 73 g~~pl~v~Ftd~s~~~~~~~WdF---GDG-----~~st~~np~htY~~~G~YtVtLtv 122 (137) ..++.+|.|.+.+...-...=+. +++ ....++.-+++|.+||+|...-.+ T Consensus 64 V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~~~~~~~~~~~~~tf~~~G~y~y~C~~ 121 (132) T 3c75_A 64 IKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP 121 (132) T ss_dssp ECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC T ss_conf 8999999999899885018962676775455666758997489977899899998179 No 33 >1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A Probab=21.51 E-value=32 Score=13.30 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=19.5 Q ss_pred CCCCCEEEEEEEECCCC---CEEEEEEEE Q ss_conf 48963579888877999---500578876 Q T0590 111 FNEGEYIVSLIVSNEND---SDSASVTIR 136 (137) Q Consensus 111 ~~~G~YtVtLtvtn~~G---s~t~t~tV~ 136 (137) -.+|.|+|.-.|-..+| +.+-..+|| T Consensus 76 L~~G~YtV~wrvvs~DGH~v~G~~~FtVk 104 (104) T 1lyq_A 76 LPAGTYRVDWRAVSSDTHPITGNYTFTVK 104 (104) T ss_dssp CCSEEEEEEEEECCTTSCCEEEEEEEEEC T ss_pred CCCEEEEEEEEEEECCCCEECCEEEEEEC T ss_conf 89825999999981589865146999989 No 34 >1pmh_X Cscbm27-1, beta-1,4-mannanase; jellyroll beta-sandwich, hydrolase; HET: MAN BMA; 1.06A {Caldicellulosiruptor saccharolyticus} SCOP: b.18.1.18 PDB: 1pmj_X Probab=20.92 E-value=24 Score=13.98 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=8.4 Q ss_pred CCCCEEEEEEEECCCC Q ss_conf 8963579888877999 Q T0590 112 NEGEYIVSLIVSNEND 127 (137) Q Consensus 112 ~~G~YtVtLtvtn~~G 127 (137) .-|.|-..++++...+ T Consensus 132 ~~g~~y~~~~i~~~~~ 147 (185) T 1pmh_X 132 INGKDYTVIHKAFAIP 147 (185) T ss_dssp ETTEEEEEEEEEEECC T ss_pred ECCCCEEEEEEEECCC T ss_conf 7784169999984158 Done!