Query T0590 MaR143A, , 137 residues Match_columns 137 No_of_seqs 127 out of 1654 Neff 6.5 Searched_HMMs 15564 Date Mon Jul 5 08:57:34 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0590.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0590.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1l0qa1 b.1.3.1 (A:302-391) Su 99.9 3.8E-23 2.4E-27 140.7 7.3 77 59-135 1-79 (90) 2 d1wgoa_ b.1.3.1 (A:) VPS10 dom 99.7 7.7E-18 5E-22 112.2 8.1 75 62-136 34-116 (123) 3 d1b4ra_ b.1.3.1 (A:) Polycyste 99.6 1.2E-15 7.9E-20 100.4 8.0 64 73-136 10-77 (80) 4 d1b4ra_ b.1.3.1 (A:) Polycyste 99.6 4E-15 2.5E-19 97.7 8.4 62 74-135 11-76 (80) 5 d1w0na_ b.18.1.28 (A:) Endo-1, 77.8 0.65 4.2E-05 21.5 2.2 36 92-128 73-108 (120) 6 d1w8oa1 b.1.18.2 (A:403-505) S 70.9 1.9 0.00012 19.0 3.2 25 111-135 73-97 (103) 7 d1q55a_ i.20.1.1 (A:) Ep-cadhe 69.2 1.9 0.00012 19.0 2.8 15 113-127 403-417 (540) 8 d1ofla_ b.80.1.4 (A:) Chondroi 66.5 0.9 5.8E-05 20.7 0.8 65 61-125 353-419 (481) 9 d1bxua_ b.6.1.1 (A:) Plastocya 66.1 1.9 0.00012 18.9 2.4 50 72-121 22-77 (91) 10 d1paza_ b.6.1.1 (A:) Pseudoazu 64.8 1.2 7.9E-05 20.0 1.2 52 71-122 23-80 (120) 11 d1cwva3 b.1.14.1 (A:693-795) I 61.0 4.5 0.00029 17.0 4.0 55 77-135 29-86 (103) 12 d1adwa_ b.6.1.1 (A:) Pseudoazu 54.8 2.6 0.00017 18.2 1.5 52 70-121 22-79 (123) 13 d1bqka_ b.6.1.1 (A:) Pseudoazu 50.6 6.6 0.00042 16.1 2.9 50 72-121 24-79 (124) 14 d2ov0a1 b.6.1.1 (A:1-105) Amic 46.4 6.2 0.0004 16.2 2.3 50 73-122 37-94 (105) 15 d1u2ca1 b.1.6.2 (A:58-160) Dys 44.7 8.5 0.00055 15.5 3.0 19 110-128 64-82 (103) 16 d1l3wa5 b.1.6.1 (A:434-540) C- 42.6 9.1 0.00059 15.3 2.6 28 108-135 66-94 (107) 17 d1plca_ b.6.1.1 (A:) Plastocya 39.8 9.8 0.00063 15.2 2.4 18 103-120 67-84 (99) 18 d1edqa1 b.1.18.2 (A:24-132) Ch 34.7 12 0.0008 14.6 4.6 62 74-135 36-105 (109) 19 d2jxma1 b.6.1.1 (A:1-97) Plast 34.6 12 0.0008 14.6 4.0 50 73-122 23-84 (97) 20 d1pmya_ b.6.1.1 (A:) Pseudoazu 34.2 6.8 0.00044 16.0 0.9 50 72-121 24-79 (123) 21 d1j83a_ b.18.1.12 (A:) Endo-1, 33.2 5.2 0.00033 16.7 0.2 18 110-127 125-142 (180) 22 d1kdja_ b.6.1.1 (A:) Plastocya 31.4 14 0.00087 14.4 2.1 19 104-122 71-89 (102) 23 d1pcsa_ b.6.1.1 (A:) Plastocya 30.0 15 0.00096 14.2 2.5 18 103-120 66-83 (98) 24 d1bqka_ b.6.1.1 (A:) Pseudoazu 29.0 9.8 0.00063 15.2 1.0 17 103-119 61-77 (124) 25 d2d7pa1 b.1.18.10 (A:8-106) Fi 27.3 17 0.0011 13.9 3.8 61 61-125 20-81 (99) 26 d1id2a_ b.6.1.1 (A:) Amicyanin 25.7 18 0.0012 13.8 2.7 50 73-122 38-95 (106) 27 d2c9qa1 b.1.18.17 (A:1-102) Co 23.8 20 0.0013 13.6 3.2 26 111-136 74-102 (102) 28 d1bypa_ b.6.1.1 (A:) Plastocya 23.5 20 0.0013 13.5 3.2 20 103-122 67-86 (99) 29 d1qfha2 b.1.18.10 (A:750-857) 23.4 20 0.0013 13.5 5.0 50 71-124 27-76 (108) 30 d1iuza_ b.6.1.1 (A:) Plastocya 21.0 23 0.0014 13.2 2.5 16 105-120 68-83 (98) No 1 >d1l0qa1 b.1.3.1 (A:302-391) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Probab=99.88 E-value=3.8e-23 Score=140.65 Aligned_cols=77 Identities=47% Similarity=0.778 Sum_probs=70.3 Q ss_pred CCCCCCCCEEECCCCCCCC--CEEEEECCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEE Q ss_conf 3322232033114775485--1574338889506999728984024687457874896357988887799950057887 Q T0590 59 PVLPTARFTSDITEGFAPL--SVRFKDFSENATSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTI 135 (137) Q Consensus 59 ~~~p~a~f~~~~~~g~~pl--~v~Ftd~s~~~~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV 135 (137) +++|+|+|.++++.+++|| .|+|+|.|.++.+|.||||||+++++++|+|+|.++|.|+|+|+|+|..|+++.++++ T Consensus 1 Pv~P~A~Ft~~~~~~~~~~~~~v~F~~~S~~~~sy~W~FGdG~~s~~~~p~h~y~~~G~Y~VtL~v~~~~g~~~~~~~~ 79 (90) T d1l0qa1 1 PVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTVRLTVSNSNGTDSQISTV 79 (90) T ss_dssp CCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSSCEEEEEEEEEEETTEEEEEEEEE T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEE T ss_conf 9899999998787586568874998979999448999958997135765779947098199999999599975899999 No 2 >d1wgoa_ b.1.3.1 (A:) VPS10 domain-containing receptor SorCS2 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.72 E-value=7.7e-18 Score=112.18 Aligned_cols=75 Identities=21% Similarity=0.152 Sum_probs=59.0 Q ss_pred CCCCCEEECCCCCCCCCEEEEE-CCCCCEEEEEECCCCC-------CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEE Q ss_conf 2232033114775485157433-8889506999728984-------0246874578748963579888877999500578 Q T0590 62 PTARFTSDITEGFAPLSVRFKD-FSENATSRLWMFGDGN-------TSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASV 133 (137) Q Consensus 62 p~a~f~~~~~~g~~pl~v~Ftd-~s~~~~~~~WdFGDG~-------~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~ 133 (137) +.+.+.+....|..++-+.|.+ .+..+++|.||||||. ++++++|.|+|..+|+|+|+|+|.|..|+++.++ T Consensus 34 ~~~~~~~~~~~G~~vtF~~~~~~~~~~~tsy~WDFGDG~~~~~~~~ss~~~~~~HtY~~~G~Y~V~ltv~n~~gsdtat~ 113 (123) T d1wgoa_ 34 SIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRHRYESPGIYRVSVRAENTAGHDEAVL 113 (123) T ss_dssp EESSCCSCBCTTCCEEEEEEESSCCSCSCEEEEECSSSCEEEEESHHHHTCCEEECCSSCSCEEEEEEEECSSCEEEEEE T ss_pred EECCCCEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCEEEEE T ss_conf 61586275047997389986048999836899997899854300457588983999996984889999985999668999 Q ss_pred EEE Q ss_conf 876 Q T0590 134 TIR 136 (137) Q Consensus 134 tV~ 136 (137) .|. T Consensus 114 ~I~ 116 (123) T d1wgoa_ 114 FVQ 116 (123) T ss_dssp EEC T ss_pred EEE T ss_conf 999 No 3 >d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.60 E-value=1.2e-15 Score=100.37 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=53.2 Q ss_pred CCCCCCEEEEECC-CCCEEEEEECCCCCC---CCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEE Q ss_conf 7548515743388-895069997289840---246874578748963579888877999500578876 Q T0590 73 GFAPLSVRFKDFS-ENATSRLWMFGDGNT---SDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTIR 136 (137) Q Consensus 73 g~~pl~v~Ftd~s-~~~~~~~WdFGDG~~---st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV~ 136 (137) .+++..+.|...+ ..+.+|.||||||.. +++.+++|+|.+||+|+|+|+|+|..|++..++.|. T Consensus 10 ~~~G~~v~F~~~~s~~~~s~~WdFGDG~~~~~s~~~~~~h~y~~~G~Y~VtLtvtn~~g~~~~~~~V~ 77 (80) T d1b4ra_ 10 LASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALLGTDVQ 77 (80) T ss_dssp CBSSEEEEEEEESCSSCSEEEEECCSSCCEEEEETTEEEEEECSSEEEEEEEEEECSSCEEEEEEEEE T ss_pred CCCCCEEEEECCCCCCCCEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEEEEECCCCCEEEEEEEE T ss_conf 56774388760589984079998269986513217743187758996158988874998358889899 No 4 >d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.57 E-value=4e-15 Score=97.66 Aligned_cols=62 Identities=21% Similarity=0.354 Sum_probs=50.3 Q ss_pred CCCCCEEEEE-CCCCCEEEEEECCCCC---CCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEE Q ss_conf 5485157433-8889506999728984---024687457874896357988887799950057887 Q T0590 74 FAPLSVRFKD-FSENATSRLWMFGDGN---TSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTI 135 (137) Q Consensus 74 ~~pl~v~Ftd-~s~~~~~~~WdFGDG~---~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV 135 (137) +++..+.|.. .+..+.+|.||||||+ ...+..++|+|..||+|.|+|+|+|..|+...++.| T Consensus 11 ~~G~~v~F~~~~s~~~~~y~WdFGDG~~~~~~~~~~~~HtY~~~G~Y~Vtltvt~~~g~~~~~~~V 76 (80) T d1b4ra_ 11 ASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALLGTDV 76 (80) T ss_dssp BSSEEEEEEEESCSSCSEEEEECCSSCCEEEEETTEEEEEECSSEEEEEEEEEECSSCEEEEEEEE T ss_pred CCCCEEEEEECCCCCCCEEEEEECCCCCCCEECCCCEEEEEECCCEEEEEEEEECCCCEEEEEEEE T ss_conf 699768999648999528999947998431147997999990899999999999499729998999 No 5 >d1w0na_ b.18.1.28 (A:) Endo-1,4-beta-xylanase D {Paenibacillus polymyxa [TaxId: 1406]} Probab=77.85 E-value=0.65 Score=21.48 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=29.7 Q ss_pred EEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCC Q ss_conf 9972898402468745787489635798888779995 Q T0590 92 LWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDS 128 (137) Q Consensus 92 ~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs 128 (137) .+.|+ |+..+++.....|...|.++|.|.|+.++|+ T Consensus 73 tfyf~-gt~P~~~ti~Nv~~~tG~~~velvvtaDnGt 108 (120) T d1w0na_ 73 SFNFT-GKTPTVQTLSNITHATGDQEIKLALTSDDGT 108 (120) T ss_dssp EEEEE-SSSCEEEEEEEEECCCEEEEEEEEESCSSSS T ss_pred EEEEC-CCCCEEEEECCCCCCCCCEEEEEEEECCCCC T ss_conf 89955-8564478800012167987899999868981 No 6 >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Probab=70.93 E-value=1.9 Score=18.99 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=19.9 Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEE Q ss_conf 4896357988887799950057887 Q T0590 111 FNEGEYIVSLIVSNENDSDSASVTI 135 (137) Q Consensus 111 ~~~G~YtVtLtvtn~~Gs~t~t~tV 135 (137) ..+|.|.++++++...++.+.+.+| T Consensus 73 a~~G~Y~i~~~a~~~~~~~s~t~tv 97 (103) T d1w8oa1 73 TTPGRYRVGATLRTSAGNASTTFTV 97 (103) T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEE T ss_pred CCCCEEEEEEEEEECCCCEEEEEEE T ss_conf 8876279999999689625888999 No 7 >d1q55a_ i.20.1.1 (A:) Ep-cadherin {Mouse (Mus musculus) [TaxId: 10090]} Probab=69.20 E-value=1.9 Score=19.04 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=10.0 Q ss_pred CCCEEEEEEEECCCC Q ss_conf 963579888877999 Q T0590 113 EGEYIVSLIVSNEND 127 (137) Q Consensus 113 ~G~YtVtLtvtn~~G 127 (137) .+.|.++++|+|..+ T Consensus 403 ~~~y~~~V~atD~~~ 417 (540) T d1q55a_ 403 NNTYTVIMLVTDDGV 417 (540) T ss_dssp SSCCEEEEEEEECSS T ss_pred CEEEEEEEEEEEECC T ss_conf 169999985887328 No 8 >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Probab=66.47 E-value=0.9 Score=20.73 Aligned_cols=65 Identities=8% Similarity=-0.139 Sum_probs=49.0 Q ss_pred CCCCCCEEECCCCCCCCCEEEEECCCC-CEEEEEECCCCC-CCCCCCCCEEECCCCCEEEEEEEECC Q ss_conf 222320331147754851574338889-506999728984-02468745787489635798888779 Q T0590 61 LPTARFTSDITEGFAPLSVRFKDFSEN-ATSRLWMFGDGN-TSDSPSPLHTFFNEGEYIVSLIVSNE 125 (137) Q Consensus 61 ~p~a~f~~~~~~g~~pl~v~Ftd~s~~-~~~~~WdFGDG~-~st~~np~htY~~~G~YtVtLtvtn~ 125 (137) ++.+.|......+..|+.+.|.|.+.+ +.+|.|..++.. .+..++|.+.+...+.|+|.+..... T Consensus 353 p~~~~~~~N~~~~~~~~~~~~~~~~~g~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (481) T d1ofla_ 353 PHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQP 419 (481) T ss_dssp CCSEEEESCEEECCSCCCCCSEECTTCCTTSSEEESCEEESSCCSSSCCCBCCSTTCCCCCCCCCCC T ss_pred CCCEEEECCEEECCCCCCEEEEECCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCEEEECCCCCC T ss_conf 8773898857888988514886268785336722387764156776633225655531110577666 No 9 >d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Probab=66.07 E-value=1.9 Score=18.95 Aligned_cols=50 Identities=18% Similarity=-0.001 Sum_probs=27.2 Q ss_pred CCCCCCCEEEEECCCCCEEEEEE------CCCCCCCCCCCCCEEECCCCCEEEEEE Q ss_conf 77548515743388895069997------289840246874578748963579888 Q T0590 72 EGFAPLSVRFKDFSENATSRLWM------FGDGNTSDSPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 72 ~g~~pl~v~Ftd~s~~~~~~~Wd------FGDG~~st~~np~htY~~~G~YtVtLt 121 (137) ...++.+|.|.+.+...-...=. |.++....++.-.++|.+||+|...-. T Consensus 22 ~I~~GdtV~f~n~d~~~h~~~~~~~~~~~~~~~~~~~g~~~~~tF~~~G~y~Y~C~ 77 (91) T d1bxua_ 22 EIQAGDTVQWVNNKLAPHNVVVEGQPELSHKDLAFSPGETFEATFSEPGTYTYYCE 77 (91) T ss_dssp EECTTCEEEEEECSSCCEEEEETTCGGGCEEEEECSTTCEEEEECCSCEEEEEECT T ss_pred EECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEC T ss_conf 99899999999898577037723654332444463799877998114856999968 No 10 >d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Probab=64.81 E-value=1.2 Score=20.01 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=27.2 Q ss_pred CCCCCCCCEEEEECCCC--CEE--EEEECCCCC--CCCCCCCCEEECCCCCEEEEEEE Q ss_conf 47754851574338889--506--999728984--02468745787489635798888 Q T0590 71 TEGFAPLSVRFKDFSEN--ATS--RLWMFGDGN--TSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 71 ~~g~~pl~v~Ftd~s~~--~~~--~~WdFGDG~--~st~~np~htY~~~G~YtVtLtv 122 (137) -...++.+|.|...+.. ... -.+..+... ..-.+..+|+|..||+|.-.-+. T Consensus 23 itI~~GDTV~f~n~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~s~tF~~~G~y~Y~Ctp 80 (120) T d1paza_ 23 IKANPGDTVTFIPVDKGHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCTP 80 (120) T ss_dssp EEECTTCEEEEEESSSSCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECTT T ss_pred EEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEE T ss_conf 9987999899952898613760356576653333335674399993678769999716 No 11 >d1cwva3 b.1.14.1 (A:693-795) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Probab=61.04 E-value=4.5 Score=17.00 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=29.9 Q ss_pred CCEEEEECCCCCE---EEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEE Q ss_conf 5157433888950---6999728984024687457874896357988887799950057887 Q T0590 77 LSVRFKDFSENAT---SRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNENDSDSASVTI 135 (137) Q Consensus 77 l~v~Ftd~s~~~~---~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~~Gs~t~t~tV 135 (137) +++...|..++++ .-.|..-.|......- .-...|.|+++|+ ....|..+.+..| T Consensus 29 lt~tv~D~~GNpv~g~~v~~~~~~~~~~~~s~---~td~~G~ytatlt-st~aG~~tVta~v 86 (103) T d1cwva3 29 LSFVPVDKNGHFISGMQGLSFTQNGVPVSISP---ITEQPDSYTATVV-GNSVGDVTITPQV 86 (103) T ss_dssp EEEECBCTTSCBCCSCCSEEEEEEESCCEECC---CEECSSCEEEEEE-CSSCEEEEEEEEE T ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCCCCCE---EECCCCEEEEEEE-CCCCCEEEEEEEE T ss_conf 99999958999967872789961677542100---7479998999998-1465079999999 No 12 >d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Probab=54.77 E-value=2.6 Score=18.22 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=26.1 Q ss_pred CCCCCCCCCEEEEECCCCCEE------EEEECCCCCCCCCCCCCEEECCCCCEEEEEE Q ss_conf 147754851574338889506------9997289840246874578748963579888 Q T0590 70 ITEGFAPLSVRFKDFSENATS------RLWMFGDGNTSDSPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 70 ~~~g~~pl~v~Ftd~s~~~~~------~~WdFGDG~~st~~np~htY~~~G~YtVtLt 121 (137) .-...++.+|+|...+..... ..+.+.......+..-+|+|..+|+|.---+ T Consensus 22 ~itI~~GdtV~f~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~ 79 (123) T d1adwa_ 22 FVRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCT 79 (123) T ss_dssp EEEECTTEEEEEEESSSSCCCEECTTSCCTTCCCCBCCTTCCEEEEECSCEEEEEECG T ss_pred EEEECCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEC T ss_conf 8998799989997379886224146754465211023577535874367974999976 No 13 >d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Probab=50.55 E-value=6.6 Score=16.10 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=26.8 Q ss_pred CCCCCCCEEEEECCCCCE--EEEEECCCCC----CCCCCCCCEEECCCCCEEEEEE Q ss_conf 775485157433888950--6999728984----0246874578748963579888 Q T0590 72 EGFAPLSVRFKDFSENAT--SRLWMFGDGN----TSDSPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 72 ~g~~pl~v~Ftd~s~~~~--~~~WdFGDG~----~st~~np~htY~~~G~YtVtLt 121 (137) ...++.+|.|...+.+.. .......++. ....+.-+|+|..+|+|.---+ T Consensus 24 tI~~GdTV~w~n~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~Tf~~~G~Y~Y~C~ 79 (124) T d1bqka_ 24 KVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCT 79 (124) T ss_dssp EECTTCEEEEECSSSSCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT T ss_pred EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEC T ss_conf 98799969999899875100111347776554233688337996477860899835 No 14 >d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Probab=46.44 E-value=6.2 Score=16.23 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=26.3 Q ss_pred CCCCCCEEEEECCCCCEEEEEEC---CCCCC-----CCCCCCCEEECCCCCEEEEEEE Q ss_conf 75485157433888950699972---89840-----2468745787489635798888 Q T0590 73 GFAPLSVRFKDFSENATSRLWMF---GDGNT-----SDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 73 g~~pl~v~Ftd~s~~~~~~~WdF---GDG~~-----st~~np~htY~~~G~YtVtLtv 122 (137) ..++.+|.|.+.+...-.....- +.+.. .-++.-+|+|.+||+|...-.. T Consensus 37 V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~~~~~~~~~g~~~~~tf~~pG~y~y~C~~ 94 (105) T d2ov0a1 37 VKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTP 94 (105) T ss_dssp ECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC T ss_conf 8899999998799886458872012776223565547995379983488289998468 No 15 >d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=44.65 E-value=8.5 Score=15.51 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=15.3 Q ss_pred ECCCCCEEEEEEEECCCCC Q ss_conf 7489635798888779995 Q T0590 110 FFNEGEYIVSLIVSNENDS 128 (137) Q Consensus 110 Y~~~G~YtVtLtvtn~~Gs 128 (137) ....|.|.|+|+|+|..|. T Consensus 64 ~~~~G~~~i~vtAtD~~~~ 82 (103) T d1u2ca1 64 DTDKGVHYISVSAARLGAN 82 (103) T ss_dssp GGGCEEEEEEEEEEEECTT T ss_pred CCCCEEEEEEEEEEECCCC T ss_conf 7772079999999967777 No 16 >d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=42.57 E-value=9.1 Score=15.34 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=19.6 Q ss_pred EEECCCCCEEEEEEEECCCC-CEEEEEEE Q ss_conf 78748963579888877999-50057887 Q T0590 108 HTFFNEGEYIVSLIVSNEND-SDSASVTI 135 (137) Q Consensus 108 htY~~~G~YtVtLtvtn~~G-s~t~t~tV 135 (137) ..+...+.|.+.+.|+|..+ ..+.+..| T Consensus 66 ld~e~~~~y~l~V~a~D~G~p~~~~tv~V 94 (107) T d1l3wa5 66 TQQLKKGDYSIYVLLSDAQNNPQLTVVNA 94 (107) T ss_dssp SSCCCSSCBCCEEECCSSSCCCEEEECCE T ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEEE T ss_conf 56663105999999972789961899999 No 17 >d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Probab=39.85 E-value=9.8 Score=15.18 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=12.7 Q ss_pred CCCCCEEECCCCCEEEEE Q ss_conf 687457874896357988 Q T0590 103 SPSPLHTFFNEGEYIVSL 120 (137) Q Consensus 103 ~~np~htY~~~G~YtVtL 120 (137) ++.-+|+|.+||+|.--- T Consensus 67 g~t~~~tF~~~G~y~Y~C 84 (99) T d1plca_ 67 GETFEVALSNKGEYSFYC 84 (99) T ss_dssp TCEEEEECCSCEEEEEEC T ss_pred CCEEEEECCCCCEEEEEE T ss_conf 846999637796388996 No 18 >d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N {Serratia marcescens [TaxId: 615]} Probab=34.68 E-value=12 Score=14.62 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=38.4 Q ss_pred CCCCCEEEEECCCC-CEEEEEECCCCCC----CCCC--CCCEEECCCCCEEEEEEEECCCC-CEEEEEEE Q ss_conf 54851574338889-5069997289840----2468--74578748963579888877999-50057887 Q T0590 74 FAPLSVRFKDFSEN-ATSRLWMFGDGNT----SDSP--SPLHTFFNEGEYIVSLIVSNEND-SDSASVTI 135 (137) Q Consensus 74 ~~pl~v~Ftd~s~~-~~~~~WdFGDG~~----st~~--np~htY~~~G~YtVtLtvtn~~G-s~t~t~tV 135 (137) .++.+|.+.-=++. ...|.--|.+-.. .+.+ .....+.+.|.|..+..+.|..| +.|..+.| T Consensus 36 ~v~v~VswN~WsG~~Gd~~~v~~dg~~V~~g~~~~~~~~a~f~v~kgG~y~m~V~LcN~~Gcs~S~~v~V 105 (109) T d1edqa1 36 AADVSVSWNLWNGDTGTTAKVLLNGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEI 105 (109) T ss_dssp SEEEEEEEECCSSCCCSEEEEEETTEEEEEEECCSSEEEEEEEECSCEEEEEEEEEEETTEEEECCCEEE T ss_pred CEEEEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEE T ss_conf 5079999987659888589999999999864687673089999668988999999985999404267899 No 19 >d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Probab=34.64 E-value=12 Score=14.62 Aligned_cols=50 Identities=12% Similarity=-0.109 Sum_probs=25.7 Q ss_pred CCCCCCEEEEECCCCCEEEEEE------------CCCCCCCCCCCCCEEECCCCCEEEEEEE Q ss_conf 7548515743388895069997------------2898402468745787489635798888 Q T0590 73 GFAPLSVRFKDFSENATSRLWM------------FGDGNTSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 73 g~~pl~v~Ftd~s~~~~~~~Wd------------FGDG~~st~~np~htY~~~G~YtVtLtv 122 (137) ..++.+|.|...+.+...-... +.++.....+.-+|+|..||+|.---+. T Consensus 23 V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~Y~C~~ 84 (97) T d2jxma1 23 ISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCTP 84 (97) T ss_dssp ECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCCCCSCSCCEEEECCSCSEEEEECSS T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC T ss_conf 99999999998998634489832787444443345665667525899965788589999746 No 20 >d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Probab=34.21 E-value=6.8 Score=16.03 Aligned_cols=50 Identities=16% Similarity=0.007 Sum_probs=25.1 Q ss_pred CCCCCCCEEEEECCCCCEEE-----EEECCCC-CCCCCCCCCEEECCCCCEEEEEE Q ss_conf 77548515743388895069-----9972898-40246874578748963579888 Q T0590 72 EGFAPLSVRFKDFSENATSR-----LWMFGDG-NTSDSPSPLHTFFNEGEYIVSLI 121 (137) Q Consensus 72 ~g~~pl~v~Ftd~s~~~~~~-----~WdFGDG-~~st~~np~htY~~~G~YtVtLt 121 (137) ...++-+|+|...+...... ..++.+. ....++..+++|..+|+|.---+ T Consensus 24 tV~~GDTV~f~n~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~ 79 (123) T d1pmya_ 24 RLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA 79 (123) T ss_dssp EECTTCEEEEECSSSSCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS T ss_pred EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 98799989996689886412135657666664222466432223578960899815 No 21 >d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium cellulovorans [TaxId: 1493]} Probab=33.17 E-value=5.2 Score=16.67 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=12.1 Q ss_pred ECCCCCEEEEEEEECCCC Q ss_conf 748963579888877999 Q T0590 110 FFNEGEYIVSLIVSNEND 127 (137) Q Consensus 110 Y~~~G~YtVtLtvtn~~G 127 (137) -..-|.|...||.+..+. T Consensus 125 ~q~dg~yKA~lTIt~~ds 142 (180) T d1j83a_ 125 AQTDGTYKATLTISTNDS 142 (180) T ss_dssp ECTTSCEEEEEEEETTTC T ss_pred ECCCCCEEEEEEECCCCC T ss_conf 447970789999647778 No 22 >d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Probab=31.41 E-value=14 Score=14.41 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=12.7 Q ss_pred CCCCEEECCCCCEEEEEEE Q ss_conf 8745787489635798888 Q T0590 104 PSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 104 ~np~htY~~~G~YtVtLtv 122 (137) ..-++++.+||+|.---++ T Consensus 71 ~~~~~~f~~~G~y~Y~C~~ 89 (102) T d1kdja_ 71 PSFKAKVSTPGTYTFYCTP 89 (102) T ss_dssp CEEEECCCSCEEEEEECST T ss_pred CEEEEEECCCCEEEEEECC T ss_conf 1899960788318999567 No 23 >d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Probab=30.00 E-value=15 Score=14.19 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=12.5 Q ss_pred CCCCCEEECCCCCEEEEE Q ss_conf 687457874896357988 Q T0590 103 SPSPLHTFFNEGEYIVSL 120 (137) Q Consensus 103 ~~np~htY~~~G~YtVtL 120 (137) ++.-+|+|.+||+|.--- T Consensus 66 g~t~~~tf~~~G~y~Y~C 83 (98) T d1pcsa_ 66 GESFTSTFTEPGTYTYYC 83 (98) T ss_dssp TCEEEEECCSCEEEEEEC T ss_pred CCEEEEECCCCCEEEEEE T ss_conf 847778516784299981 No 24 >d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} SCOP: d1adwa_ d1pzca_ d1paza_ d8paza_ d6paza_ d4paza_ d1py0a_ d1pmya_ Probab=28.97 E-value=9.8 Score=15.17 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=12.5 Q ss_pred CCCCCEEECCCCCEEEE Q ss_conf 68745787489635798 Q T0590 103 SPSPLHTFFNEGEYIVS 119 (137) Q Consensus 103 ~~np~htY~~~G~YtVt 119 (137) ...-+|+|..+|+|.-- T Consensus 61 ~~~~~~tf~~~G~Y~Y~ 77 (124) T d1bqka_ 61 NENYKVTFTAPGVYGVK 77 (124) T ss_dssp TCCEEEECCSCEEEEEE T ss_pred CEEEEEEECCCCEEEEE T ss_conf 10477740688522588 No 25 >d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]} Probab=27.34 E-value=17 Score=13.92 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=41.6 Q ss_pred CCCCCCEEECCCCCCCCCEEEEECCCCC-EEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEECC Q ss_conf 2223203311477548515743388895-0699972898402468745787489635798888779 Q T0590 61 LPTARFTSDITEGFAPLSVRFKDFSENA-TSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSNE 125 (137) Q Consensus 61 ~p~a~f~~~~~~g~~pl~v~Ftd~s~~~-~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn~ 125 (137) --.+.|......+...|.|...+.++.. .--..+.+||.. ..+++=..+|.|.|.++..+. T Consensus 20 g~~~~F~V~~~~~~g~l~v~v~~p~g~~v~~~v~~~~dg~y----~v~y~P~~~G~~~i~V~~~g~ 81 (99) T d2d7pa1 20 NQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKH----TIRFIPHENGVHSIDVKFNGA 81 (99) T ss_dssp TCCEEEEEECTTCCSCEEEEEECSSSCBCCCEECSCBTTEE----EEEECCSSCEEEEEEEEESSC T ss_pred CCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCEE----EEEEEECCCCCEEEEEEECCE T ss_conf 99699999978988708999996999984049993799889----999997878728999999999 No 26 >d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Probab=25.70 E-value=18 Score=13.76 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=26.8 Q ss_pred CCCCCCEEEEECCCCCEEEEEE--------CCCCCCCCCCCCCEEECCCCCEEEEEEE Q ss_conf 7548515743388895069997--------2898402468745787489635798888 Q T0590 73 GFAPLSVRFKDFSENATSRLWM--------FGDGNTSDSPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 73 g~~pl~v~Ftd~s~~~~~~~Wd--------FGDG~~st~~np~htY~~~G~YtVtLtv 122 (137) ...+.+|.|.+.+...-....+ |..|....+...+++|.++|+|...-.. T Consensus 38 V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~s~~~~~~~~~~~tf~~~G~y~y~C~~ 95 (106) T d1id2a_ 38 IKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP 95 (106) T ss_dssp ECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCC T ss_conf 8899999999899884167851434775554555668996688855888389998268 No 27 >d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]} Probab=23.79 E-value=20 Score=13.55 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.4 Q ss_pred CCCCCEEEEEEEECCCC---CEEEEEEEE Q ss_conf 48963579888877999---500578876 Q T0590 111 FNEGEYIVSLIVSNEND---SDSASVTIR 136 (137) Q Consensus 111 ~~~G~YtVtLtvtn~~G---s~t~t~tV~ 136 (137) -.+|.|+|.-.|-..+| +.+-+.+|| T Consensus 74 l~~G~Y~V~wrvvs~DGH~~~G~~~FtVk 102 (102) T d2c9qa1 74 LTAGTYKVDWRAVSSDTHPITGSVTFKVK 102 (102) T ss_dssp CCSEEEEEEEEECCTTCCCEEEEEEEEEC T ss_pred CCCCEEEEEEEEEECCCCEECCEEEEEEC T ss_conf 88742999999992689865057998989 No 28 >d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Probab=23.52 E-value=20 Score=13.52 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=13.0 Q ss_pred CCCCCEEECCCCCEEEEEEE Q ss_conf 68745787489635798888 Q T0590 103 SPSPLHTFFNEGEYIVSLIV 122 (137) Q Consensus 103 ~~np~htY~~~G~YtVtLtv 122 (137) ...-++++..||+|.---++ T Consensus 67 ~~~~~~tf~~~G~y~y~C~~ 86 (99) T d1bypa_ 67 GEEYSVTLTEKGTYKFYCAP 86 (99) T ss_dssp TCEEEEEECSCEEEEEECGG T ss_pred CCEEEEEECCCCEEEEEECC T ss_conf 85699996578539999776 No 29 >d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]} Probab=23.39 E-value=20 Score=13.51 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=33.4 Q ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEEEEEC Q ss_conf 477548515743388895069997289840246874578748963579888877 Q T0590 71 TEGFAPLSVRFKDFSENATSRLWMFGDGNTSDSPSPLHTFFNEGEYIVSLIVSN 124 (137) Q Consensus 71 ~~g~~pl~v~Ftd~s~~~~~~~WdFGDG~~st~~np~htY~~~G~YtVtLtvtn 124 (137) ..|.+.|.|.....+..+..-..|.+||+- ..+++-..+|.|.|.++.-+ T Consensus 27 ~~G~~~~~v~i~gp~~~~~~~v~d~~dGty----~v~y~p~~~G~y~v~V~~~g 76 (108) T d1qfha2 27 TYGGDKFEVSITGPAEEITLDAIDNQDGTY----TAAYSLVGNGRFSTGVKLNG 76 (108) T ss_dssp SSCCCCEEEEEEECCSEEEEEEEECSSSEE----EEEEEEESSEEEEEEEEETT T ss_pred CCCCCEEEEEEECCCCCCCCEEEECCCCEE----EEEEEECCCEEEEEEEEECC T ss_conf 118970999997898503309998999899----99999785626999999999 No 30 >d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Probab=20.96 E-value=23 Score=13.23 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=10.5 Q ss_pred CCCEEECCCCCEEEEE Q ss_conf 7457874896357988 Q T0590 105 SPLHTFFNEGEYIVSL 120 (137) Q Consensus 105 np~htY~~~G~YtVtL 120 (137) .-++++..||+|.--- T Consensus 68 ~~~~~f~~~G~y~y~C 83 (98) T d1iuza_ 68 TVVRKLSTPGVYGVYC 83 (98) T ss_dssp EEEEECCSCEEEEEEC T ss_pred EEEEECCCCCEEEEEE T ss_conf 7999637895599995 Done!