Query T0591 YP_354942.1, , 406 residues Match_columns 406 No_of_seqs 188 out of 8756 Neff 8.6 Searched_HMMs 22458 Date Mon Jul 5 09:17:00 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0591.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0591.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1j32_A Aspartate aminotransfer 100.0 0 0 549.5 35.9 386 1-404 1-387 (388) 2 1xi9_A Putative transaminase; 100.0 0 0 507.5 35.7 356 38-404 38-403 (406) 3 3b46_A Aminotransferase BNA3; 100.0 0 0 513.7 28.5 359 39-401 58-444 (447) 4 1bw0_A TAT, protein (tyrosine 100.0 0 0 501.0 36.5 360 39-406 34-415 (416) 5 3fvs_A Kynurenine--oxoglutarat 100.0 0 0 504.7 33.3 365 37-404 27-422 (422) 6 1b5p_A Protein (aspartate amin 100.0 0 0 501.3 34.5 378 3-403 4-384 (385) 7 2o1b_A Aminotransferase, class 100.0 0 0 507.6 29.6 361 35-405 43-404 (404) 8 2o0r_A RV0858C (N-succinyldiam 100.0 0 0 503.4 31.8 362 37-405 24-397 (411) 9 1d2f_A MALY protein; aminotran 100.0 0 0 496.9 36.4 381 4-405 5-390 (390) 10 1yiz_A Kynurenine aminotransfe 100.0 0 0 497.7 35.3 360 39-401 38-426 (429) 11 3dyd_A Tyrosine aminotransfera 100.0 0 0 495.2 36.6 356 39-405 55-425 (427) 12 3kax_A Aminotransferase, class 100.0 0 0 494.2 34.6 376 3-401 4-382 (383) 13 3dzz_A Putative pyridoxal 5'-p 100.0 0 0 492.7 34.3 361 37-405 26-390 (391) 14 3e2y_A Kynurenine-oxoglutarate 100.0 0 0 491.6 34.1 362 36-400 21-409 (410) 15 3fdb_A Beta C-S lyase, putativ 100.0 0 0 492.0 32.0 353 37-404 22-376 (377) 16 1gd9_A Aspartate aminotransfer 100.0 0 0 482.7 37.8 385 1-405 1-387 (389) 17 1c7n_A Cystalysin; transferase 100.0 0 0 490.4 31.7 383 5-405 7-394 (399) 18 1u08_A Hypothetical aminotrans 100.0 0 0 479.0 36.4 353 39-400 31-386 (386) 19 1o4s_A Aspartate aminotransfer 100.0 0 0 479.0 36.4 375 3-403 14-388 (389) 20 3h14_A Aminotransferase, class 100.0 0 0 477.4 34.4 372 12-405 11-383 (391) 21 2dou_A Probable N-succinyldiam 100.0 0 0 475.6 31.0 352 38-402 25-376 (376) 22 3ihj_A Alanine aminotransferas 100.0 0 0 469.9 34.7 380 19-405 42-494 (498) 23 2gb3_A Aspartate aminotransfer 100.0 0 0 471.0 33.8 354 38-406 43-404 (409) 24 2z61_A Probable aspartate amin 100.0 0 0 470.2 34.2 367 3-403 2-370 (370) 25 1wst_A MSAT, multiple substrat 100.0 0 0 469.9 32.7 362 37-404 40-411 (417) 26 3jtx_A Aminotransferase; NP_28 100.0 0 0 463.1 34.1 354 36-402 27-396 (396) 27 3ei9_A LL-diaminopimelate amin 100.0 0 0 467.5 28.9 387 4-405 27-429 (432) 28 2zc0_A Alanine glyoxylate tran 100.0 0 0 458.3 34.9 393 1-404 1-404 (407) 29 1m7y_A ACC synthase, 1-aminocy 100.0 0 0 461.3 31.3 388 7-405 4-433 (435) 30 3g0t_A Putative aminotransfera 100.0 0 0 460.7 31.6 391 3-403 11-436 (437) 31 1iay_A ACC synthase 2, 1-amino 100.0 0 0 465.3 26.5 354 39-403 37-426 (428) 32 1vp4_A Aminotransferase, putat 100.0 0 0 457.6 32.1 382 3-405 17-419 (425) 33 3if2_A Aminotransferase; YP_26 100.0 0 0 456.8 30.3 391 1-405 2-441 (444) 34 3ezs_A Aminotransferase ASPB; 100.0 0 0 452.7 30.8 356 28-404 13-375 (376) 35 3ele_A Amino transferase; RER0 100.0 0 0 449.2 28.5 383 1-405 2-397 (398) 36 2r2n_A Kynurenine/alpha-aminoa 100.0 0 0 446.3 27.2 356 37-404 30-424 (425) 37 2zyj_A Alpha-aminodipate amino 100.0 0 0 431.0 33.4 353 37-406 31-395 (397) 38 3g7q_A Valine-pyruvate aminotr 100.0 0 0 440.9 25.3 387 7-404 4-413 (417) 39 1v2d_A Glutamine aminotransfer 100.0 0 0 428.9 33.0 369 1-406 1-373 (381) 40 3d6k_A Putative aminotransfera 100.0 0 0 423.6 26.1 359 27-403 21-417 (422) 41 3ez1_A Aminotransferase MOCR f 100.0 0 0 418.5 26.7 353 36-406 23-421 (423) 42 3f6t_A Aspartate aminotransfer 100.0 0 0 414.6 22.3 323 71-404 131-525 (533) 43 2zy4_A L-aspartate beta-decarb 100.0 0 0 405.6 28.2 323 71-404 132-522 (546) 44 7aat_A Aspartate aminotransfer 100.0 0 0 408.9 25.1 345 37-402 27-401 (401) 45 1ajs_A Aspartate aminotransfer 100.0 0 0 404.6 20.6 359 27-405 20-412 (412) 46 3cq5_A Histidinol-phosphate am 100.0 0 0 386.5 33.4 334 38-402 30-366 (369) 47 3get_A Histidinol-phosphate am 100.0 0 0 392.1 27.3 363 1-401 2-364 (365) 48 3ftb_A Histidinol-phosphate am 100.0 0 0 383.9 33.3 335 38-404 26-361 (361) 49 3fsl_A Aromatic-amino-acid ami 100.0 0 0 391.7 26.8 344 37-401 25-397 (397) 50 3euc_A Histidinol-phosphate am 100.0 0 0 386.9 30.1 334 39-403 31-367 (367) 51 2q7w_A Aspartate aminotransfer 100.0 0 0 396.1 22.0 344 38-401 26-396 (396) 52 2ay1_A Aroat, aromatic amino a 100.0 0 0 389.0 26.3 344 37-400 25-392 (394) 53 1lc5_A COBD, L-threonine-O-3-p 100.0 0 0 380.1 31.8 336 39-405 25-361 (364) 54 1yaa_A Aspartate aminotransfer 100.0 0 0 391.0 22.8 348 37-404 28-411 (412) 55 3fkd_A L-threonine-O-3-phospha 100.0 0 0 385.6 25.7 331 36-405 13-343 (350) 56 3ffh_A Histidinol-phosphate am 100.0 0 0 374.5 31.7 359 1-400 4-362 (363) 57 3hdo_A Histidinol-phosphate am 100.0 0 0 362.1 34.0 326 38-402 26-353 (360) 58 3bwn_A AT1G70560, L-tryptophan 100.0 0 0 378.5 20.2 337 26-400 9-383 (391) 59 1fg7_A Histidinol phosphate am 100.0 0 0 360.4 29.8 311 40-388 31-343 (356) 60 3meb_A Aspartate aminotransfer 100.0 0 0 359.2 26.9 364 29-404 41-444 (448) 61 3ly1_A Putative histidinol-pho 100.0 0 0 352.0 30.9 336 36-403 14-351 (354) 62 1uu1_A Histidinol-phosphate am 100.0 0 0 352.9 26.4 318 37-405 18-335 (335) 63 2hox_A ALLIIN lyase 1; cystein 100.0 0 0 359.2 16.9 328 40-405 58-426 (427) 64 2z9v_A Aspartate aminotransfer 100.0 2.2E-34 1E-38 250.5 28.6 333 37-404 6-371 (392) 65 2aeu_A Hypothetical protein MJ 100.0 1.8E-34 7.9E-39 251.2 19.7 320 41-401 31-372 (374) 66 1eg5_A Aminotransferase; PLP-d 100.0 2.6E-28 1.2E-32 209.4 23.2 322 52-405 12-377 (384) 67 3f0h_A Aminotransferase; RER07 100.0 9.8E-27 4.4E-31 198.8 25.9 329 38-403 18-373 (376) 68 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.3E-26 1E-30 196.2 20.7 336 38-404 7-370 (371) 69 1elu_A L-cysteine/L-cystine C- 99.9 2.1E-25 9.2E-30 189.8 23.2 332 34-399 11-387 (390) 70 2yrr_A Aminotransferase, class 99.9 3.6E-25 1.6E-29 188.2 23.7 325 41-402 2-351 (353) 71 3kki_A CAI-1 autoinducer synth 99.9 2.3E-24 1E-28 182.8 26.3 330 39-404 60-404 (409) 72 1jg8_A L-ALLO-threonine aldola 99.9 3.6E-24 1.6E-28 181.4 21.7 328 40-404 5-346 (347) 73 1svv_A Threonine aldolase; str 99.9 9.3E-24 4.2E-28 178.6 23.8 331 38-402 13-356 (359) 74 3lws_A Aromatic amino acid bet 99.9 9.7E-25 4.3E-29 185.3 18.6 318 55-401 21-356 (357) 75 3lvm_A Cysteine desulfurase; s 99.9 4.7E-23 2.1E-27 173.8 22.4 338 32-405 15-400 (423) 76 1v72_A Aldolase; PLP-dependent 99.9 1.6E-22 7E-27 170.3 25.0 338 37-406 6-355 (356) 77 1fc4_A 2-amino-3-ketobutyrate 99.9 2.8E-22 1.2E-26 168.6 21.4 342 37-404 43-397 (401) 78 3frk_A QDTB; aminotransferase, 99.9 8E-24 3.6E-28 179.1 13.2 306 60-400 22-364 (373) 79 1ax4_A Tryptophanase; tryptoph 99.9 6.7E-21 3E-25 159.3 26.7 332 57-405 57-442 (467) 80 2ez2_A Beta-tyrosinase, tyrosi 99.9 7.5E-21 3.4E-25 158.9 26.5 329 58-404 57-431 (456) 81 2w8t_A SPT, serine palmitoyltr 99.9 6.6E-21 3E-25 159.3 25.6 323 54-404 80-415 (427) 82 2dr1_A PH1308 protein, 386AA l 99.9 5.1E-20 2.3E-24 153.3 29.6 329 41-406 22-381 (386) 83 3b8x_A WBDK, pyridoxamine 5-ph 99.9 7.6E-21 3.4E-25 158.9 24.6 316 41-397 4-389 (390) 84 3cai_A Possible aminotransfera 99.9 1.8E-20 8.2E-25 156.3 24.9 340 27-399 13-404 (406) 85 3a2b_A Serine palmitoyltransfe 99.9 1.2E-19 5.1E-24 150.9 27.9 334 40-405 45-393 (398) 86 1kmj_A Selenocysteine lyase; p 99.9 2E-19 9.1E-24 149.2 28.7 317 53-402 35-403 (406) 87 3a9z_A Selenocysteine lyase; P 99.9 2.1E-19 9.3E-24 149.2 25.9 320 53-406 30-430 (432) 88 1bs0_A Protein (8-amino-7-oxon 99.9 9.7E-19 4.3E-23 144.6 28.3 324 40-400 41-383 (384) 89 2huf_A Alanine glyoxylate amin 99.9 6.6E-19 3E-23 145.8 25.4 322 54-406 31-385 (393) 90 1t3i_A Probable cysteine desul 99.9 1.2E-17 5.3E-22 137.2 29.9 324 53-405 40-414 (420) 91 2c81_A Glutamine-2-deoxy-scyll 99.8 1.2E-17 5.3E-22 137.3 28.0 324 48-404 9-414 (418) 92 3gbx_A Serine hydroxymethyltra 99.8 6.3E-19 2.8E-23 145.9 21.1 336 40-403 32-395 (420) 93 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 3.7E-19 1.6E-23 147.5 19.4 312 80-405 97-444 (450) 94 1e5e_A MGL, methionine gamma-l 99.8 4.8E-17 2.1E-21 133.2 29.5 290 71-401 54-399 (404) 95 2bwn_A 5-aminolevulinate synth 99.8 6E-17 2.7E-21 132.5 29.8 336 40-403 48-399 (401) 96 3ht4_A Aluminum resistance pro 99.8 7.9E-20 3.5E-24 152.0 14.1 230 82-332 66-313 (431) 97 3kgw_A Alanine-glyoxylate amin 99.8 4.2E-17 1.9E-21 133.6 26.8 321 54-405 35-389 (393) 98 1cs1_A CGS, protein (cystathio 99.8 1.9E-16 8.3E-21 129.2 28.8 283 69-392 42-374 (386) 99 2rfv_A Methionine gamma-lyase; 99.8 4.6E-16 2.1E-20 126.5 30.3 289 71-403 56-395 (398) 100 2z67_A O-phosphoseryl-tRNA(SEC 99.8 8.5E-18 3.8E-22 138.3 20.9 302 82-401 134-455 (456) 101 2pb2_A Acetylornithine/succiny 99.8 2.8E-16 1.3E-20 128.0 28.7 333 39-406 58-420 (420) 102 3f9t_A TDC, L-tyrosine decarbo 99.8 5.2E-17 2.3E-21 132.9 24.9 325 53-402 42-396 (397) 103 1ibj_A CBL, cystathionine beta 99.8 2.1E-16 9.4E-21 128.8 27.8 288 71-404 125-462 (464) 104 1gc0_A Methionine gamma-lyase; 99.8 3.6E-16 1.6E-20 127.2 28.8 283 71-394 57-390 (398) 105 1qgn_A Protein (cystathionine 99.8 5.7E-16 2.5E-20 125.9 28.8 228 71-333 106-340 (445) 106 3cog_A Cystathionine gamma-lya 99.8 1.4E-16 6.1E-21 130.1 24.1 282 71-394 59-391 (403) 107 2oqx_A Tryptophanase; lyase, p 99.8 1.9E-16 8.5E-21 129.1 24.7 327 59-403 57-441 (467) 108 3dr4_A Putative perosamine syn 99.8 5.1E-17 2.3E-21 133.0 21.6 317 41-400 27-389 (391) 109 3ju7_A Putative PLP-dependent 99.8 1.8E-16 8.2E-21 129.2 23.5 318 53-402 14-373 (377) 110 3e6g_A Xometc, cystathionine g 99.8 1.2E-15 5.5E-20 123.6 27.7 282 71-394 59-392 (400) 111 3jzl_A Putative cystathionine 99.8 2.6E-17 1.2E-21 134.9 18.7 227 82-332 60-307 (409) 112 2bkw_A Alanine-glyoxylate amin 99.8 7E-17 3.1E-21 132.1 20.3 299 81-405 38-385 (385) 113 2fq6_A Cystathionine beta-lyas 99.8 1.6E-15 7.1E-20 122.9 26.0 284 71-393 74-406 (415) 114 2ord_A Acoat, acetylornithine 99.8 6.7E-16 3E-20 125.4 23.9 341 37-403 38-396 (397) 115 3ffr_A Phosphoserine aminotran 99.8 7.9E-16 3.5E-20 125.0 23.8 326 41-401 6-361 (362) 116 1z7d_A Ornithine aminotransfer 99.8 1.8E-15 7.9E-20 122.6 25.5 341 39-405 66-430 (433) 117 1mdo_A ARNB aminotransferase; 99.8 2E-15 9E-20 122.2 25.3 309 55-403 20-385 (393) 118 2eh6_A Acoat, acetylornithine 99.8 2.2E-15 9.7E-20 122.0 25.4 334 37-401 26-375 (375) 119 3i4j_A Aminotransferase, class 99.8 6.3E-15 2.8E-19 118.8 27.1 353 39-404 30-428 (430) 120 2ctz_A O-acetyl-L-homoserine s 99.8 1E-14 4.5E-19 117.4 28.1 286 71-395 50-417 (421) 121 1sff_A 4-aminobutyrate aminotr 99.8 4.5E-15 2E-19 119.8 26.2 346 39-405 42-425 (426) 122 2cb1_A O-acetyl homoserine sul 99.8 1.5E-14 6.9E-19 116.2 28.5 282 69-393 46-404 (412) 123 2po3_A 4-dehydrase; external a 99.8 2.8E-15 1.2E-19 121.2 24.4 321 43-403 21-385 (424) 124 3bv0_A Adenosylmethionine-8-am 99.8 3.1E-15 1.4E-19 120.9 24.3 335 40-405 57-434 (437) 125 2oga_A Transaminase; PLP-depen 99.7 4.5E-15 2E-19 119.9 25.0 310 55-404 44-396 (399) 126 2dgk_A GAD-beta, GADB, glutama 99.7 1.5E-14 6.5E-19 116.4 26.0 340 53-405 54-435 (452) 127 1b9h_A AHBA synthase, protein 99.7 5.4E-14 2.4E-18 112.5 28.9 312 53-403 15-387 (388) 128 1vef_A Acetylornithine/acetyl- 99.7 1.5E-14 6.8E-19 116.2 25.0 324 39-401 46-394 (395) 129 1iug_A Putative aspartate amin 99.7 4E-14 1.8E-18 113.4 26.6 316 54-406 13-350 (352) 130 3dxv_A Alpha-amino-epsilon-cap 99.7 3.9E-14 1.7E-18 113.5 26.3 347 39-406 57-440 (452) 131 3e9k_A Kynureninase; kynurenin 99.7 6.4E-15 2.8E-19 118.8 21.1 318 55-403 81-460 (465) 132 2oat_A Ornithine aminotransfer 99.7 4.5E-14 2E-18 113.0 25.4 338 40-404 78-439 (439) 133 1vjo_A Alanine--glyoxylate ami 99.7 1.3E-14 5.7E-19 116.7 22.1 317 54-401 46-392 (393) 134 2qma_A Diaminobutyrate-pyruvat 99.7 1.1E-13 5.1E-18 110.3 26.6 319 66-404 125-496 (497) 135 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.7 2.6E-14 1.1E-18 114.7 23.0 310 54-402 42-434 (437) 136 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 2.6E-14 1.1E-18 114.7 22.8 308 82-405 117-462 (501) 137 1s0a_A Adenosylmethionine-8-am 99.7 3E-13 1.3E-17 107.5 27.0 341 39-403 44-423 (429) 138 2ch1_A 3-hydroxykynurenine tra 99.7 6.7E-14 3E-18 111.9 23.6 320 54-405 30-384 (396) 139 3fq8_A Glutamate-1-semialdehyd 99.7 1.8E-13 8.2E-18 108.9 25.2 340 39-404 53-427 (427) 140 1js3_A DDC;, DOPA decarboxylas 99.7 1E-12 4.5E-17 103.9 28.8 319 71-406 103-476 (486) 141 1c4k_A Protein (ornithine deca 99.7 3E-13 1.3E-17 107.5 26.0 166 87-263 179-364 (730) 142 2eo5_A 419AA long hypothetical 99.7 3.9E-13 1.7E-17 106.7 26.5 337 39-405 43-419 (419) 143 3i16_A Aluminum resistance pro 99.7 1.1E-14 5.1E-19 117.1 18.6 227 82-332 74-324 (427) 144 1m32_A 2-aminoethylphosphonate 99.7 9.9E-14 4.4E-18 110.7 23.3 294 84-402 40-363 (366) 145 3l44_A Glutamate-1-semialdehyd 99.7 1.4E-13 6.5E-18 109.6 23.8 341 39-405 56-431 (434) 146 3hbx_A GAD 1, glutamate decarb 99.7 3E-13 1.3E-17 107.5 25.3 338 53-405 68-445 (502) 147 2cjg_A L-lysine-epsilon aminot 99.7 8.7E-15 3.9E-19 117.9 17.3 347 40-404 56-448 (449) 148 1qz9_A Kynureninase; kynurenin 99.7 2.5E-14 1.1E-18 114.8 19.5 334 34-403 23-401 (416) 149 3hvy_A Cystathionine beta-lyas 99.7 7.6E-15 3.4E-19 118.3 16.7 230 78-332 75-324 (427) 150 3ecd_A Serine hydroxymethyltra 99.7 3.4E-13 1.5E-17 107.1 24.7 337 39-403 33-396 (425) 151 1zod_A DGD, 2,2-dialkylglycine 99.7 2.2E-12 1E-16 101.6 28.7 349 37-403 41-431 (433) 152 1pff_A Methionine gamma-lyase; 99.7 4.3E-13 1.9E-17 106.4 24.9 215 82-333 3-226 (331) 153 2vyc_A Biodegradative arginine 99.7 4.6E-13 2E-17 106.2 24.9 162 87-256 211-390 (755) 154 1n8p_A Cystathionine gamma-lya 99.6 9.1E-13 4E-17 104.2 26.0 219 70-325 46-274 (393) 155 3k40_A Aromatic-L-amino-acid d 99.6 9.9E-12 4.4E-16 97.2 29.6 322 66-405 98-472 (475) 156 2epj_A Glutamate-1-semialdehyd 99.6 2.8E-13 1.2E-17 107.7 21.3 340 40-404 58-431 (434) 157 3k28_A Glutamate-1-semialdehyd 99.6 2.1E-13 9.1E-18 108.6 20.5 342 39-406 54-429 (429) 158 2cy8_A D-phgat, D-phenylglycin 99.6 5.8E-12 2.6E-16 98.8 27.8 338 40-405 59-436 (453) 159 2vi8_A Serine hydroxymethyltra 99.6 3.4E-13 1.5E-17 107.1 21.3 335 40-402 25-385 (405) 160 2dkj_A Serine hydroxymethyltra 99.6 7.6E-13 3.4E-17 104.7 23.1 337 39-403 24-387 (407) 161 2fnu_A Aminotransferase; prote 99.6 7.2E-13 3.2E-17 104.9 22.3 311 54-405 12-373 (375) 162 3gju_A Putative aminotransfera 99.6 3.4E-11 1.5E-15 93.6 30.4 344 39-404 52-456 (460) 163 3h7f_A Serine hydroxymethyltra 99.6 2.3E-12 1E-16 101.4 23.9 337 39-402 46-412 (447) 164 3dod_A Adenosylmethionine-8-am 99.6 3.7E-12 1.7E-16 100.1 24.7 345 39-406 45-445 (448) 165 3i5t_A Aminotransferase; pyrid 99.6 8.2E-12 3.6E-16 97.7 25.8 344 39-405 55-455 (476) 166 2a7v_A Serine hydroxymethyltra 99.6 1.2E-11 5.4E-16 96.6 26.6 341 40-402 56-439 (490) 167 2e7u_A Glutamate-1-semialdehyd 99.6 2.6E-13 1.1E-17 107.9 17.9 336 39-401 53-424 (424) 168 3ke3_A Putative serine-pyruvat 99.6 2.7E-12 1.2E-16 101.0 21.6 285 102-405 52-377 (379) 169 1rv3_A Serine hydroxymethyltra 99.6 1.9E-11 8.6E-16 95.2 25.1 340 37-402 43-429 (483) 170 1ohv_A 4-aminobutyrate aminotr 99.5 2.6E-12 1.2E-16 101.1 20.3 343 39-405 64-472 (472) 171 2okj_A Glutamate decarboxylase 99.5 1.8E-10 8E-15 88.7 29.2 325 61-404 112-502 (504) 172 3hmu_A Aminotransferase, class 99.5 1.5E-11 6.7E-16 96.0 23.0 343 39-404 56-452 (472) 173 3a8u_X Omega-amino acid--pyruv 99.5 1.1E-11 4.8E-16 97.0 22.0 341 39-405 51-448 (449) 174 1o69_A Aminotransferase; struc 99.5 2.4E-12 1.1E-16 101.4 18.2 309 57-402 14-385 (394) 175 3m5u_A Phosphoserine aminotran 99.5 2.4E-10 1.1E-14 87.8 26.9 327 39-404 5-360 (361) 176 2fyf_A PSAT, phosphoserine ami 99.5 1.8E-11 8.2E-16 95.4 20.4 323 37-404 38-398 (398) 177 2jis_A Cysteine sulfinic acid 99.5 1.1E-09 4.7E-14 83.4 29.1 323 63-403 130-514 (515) 178 1bjn_A PSAT, phosphoserine ami 99.4 1.3E-11 5.9E-16 96.3 16.6 326 41-404 3-359 (360) 179 1w23_A Phosphoserine aminotran 99.3 1.4E-09 6.4E-14 82.6 20.8 325 40-403 4-359 (360) 180 1wyu_A Glycine dehydrogenase ( 99.2 1.8E-08 8.1E-13 75.1 22.7 318 44-400 70-436 (438) 181 2c0r_A PSAT, phosphoserine ami 99.2 1.7E-09 7.6E-14 82.0 17.3 323 40-404 5-361 (362) 182 1wyu_B Glycine dehydrogenase s 99.0 2.5E-07 1.1E-11 67.4 21.4 366 4-403 31-440 (474) 183 3e77_A Phosphoserine aminotran 98.7 4.5E-06 2E-10 58.9 19.1 333 41-405 11-376 (377) 184 3gh5_A HEX1, beta-hexosaminida 91.2 0.68 3E-05 23.8 7.8 104 94-215 124-273 (525) 185 2gjx_A Beta-hexosaminidase alp 91.1 0.67 3E-05 23.9 6.9 105 94-216 94-233 (507) 186 1jak_A Beta-N-acetylhexosamini 89.9 0.87 3.9E-05 23.1 7.7 105 94-216 100-249 (512) 187 3m07_A Putative alpha amylase; 86.9 1.3 6E-05 21.8 6.7 36 190-225 195-230 (618) 188 2nu8_A Succinyl-COA ligase [AD 86.0 1.5 6.7E-05 21.5 8.3 87 122-224 38-128 (288) 189 1oi7_A Succinyl-COA synthetase 83.3 2 8.7E-05 20.7 7.7 86 122-223 38-127 (288) 190 3l6e_A Oxidoreductase, short-c 82.3 2.1 9.4E-05 20.5 8.6 95 102-207 4-108 (235) 191 1g94_A Alpha-amylase; beta-alp 81.9 2.2 9.8E-05 20.4 5.4 18 80-99 65-82 (448) 192 3k1d_A 1,4-alpha-glucan-branch 81.8 2.2 9.9E-05 20.3 6.4 36 190-225 305-340 (722) 193 2e8y_A AMYX protein, pullulana 81.0 1 4.5E-05 22.7 3.2 28 197-224 315-342 (718) 194 2bhu_A Maltooligosyltrehalose 80.7 2.4 0.00011 20.1 6.9 35 187-224 185-219 (602) 195 3l55_A B-1,4-endoglucanase/cel 80.2 2.5 0.00011 20.0 6.4 19 139-157 58-76 (353) 196 2yv2_A Succinyl-COA synthetase 79.3 2.7 0.00012 19.8 5.0 78 129-222 53-133 (297) 197 1yht_A DSPB; beta barrel, hydr 79.3 2.1 9.5E-05 20.5 4.4 22 198-219 197-219 (367) 198 1now_A Beta-hexosaminidase bet 78.9 2.7 0.00012 19.7 7.1 105 94-216 100-238 (507) 199 1m7x_A 1,4-alpha-glucan branch 78.6 2.8 0.00012 19.7 6.7 35 191-225 198-232 (617) 200 3czg_A Sucrose hydrolase; (alp 78.5 2.5 0.00011 20.0 4.6 27 196-222 154-180 (644) 201 1hx0_A Alpha amylase (PPA); in 78.0 2.9 0.00013 19.5 5.8 18 80-99 77-94 (496) 202 1h4p_A Glucan 1,3-beta-glucosi 77.1 3.1 0.00014 19.4 6.2 33 334-369 363-395 (408) 203 2yv1_A Succinyl-COA ligase [AD 76.5 3.2 0.00014 19.3 7.5 109 96-221 8-131 (294) 204 1jae_A Alpha-amylase; glycosid 73.6 2.9 0.00013 19.6 3.8 26 197-222 74-99 (471) 205 1c7s_A Beta-N-acetylhexosamini 71.3 4.2 0.00019 18.4 5.2 118 94-216 262-418 (858) 206 1eh9_A Glycosyltrehalose treha 71.0 4.3 0.00019 18.4 8.0 32 193-224 163-194 (558) 207 1bf2_A Isoamylase; hydrolase, 70.4 4.4 0.0002 18.3 4.5 30 196-225 271-300 (750) 208 2vr5_A Glycogen operon protein 70.2 4.5 0.0002 18.3 4.9 29 196-224 265-293 (718) 209 1ua7_A Alpha-amylase; beta-alp 69.3 4.3 0.00019 18.4 3.9 18 200-217 77-94 (422) 210 3dmy_A Protein FDRA; predicted 67.2 4.4 0.00019 18.3 3.6 136 41-184 37-177 (480) 211 1edg_A Endoglucanase A; family 64.5 5.8 0.00026 17.5 6.2 18 138-155 66-83 (380) 212 3cn9_A Carboxylesterase; alpha 62.3 4.6 0.00021 18.2 2.9 22 102-123 116-137 (226) 213 1ud2_A Amylase, alpha-amylase; 61.2 5.4 0.00024 17.7 3.1 10 334-343 402-411 (480) 214 3bh4_A Alpha-amylase; calcium, 61.0 5.7 0.00025 17.6 3.2 25 197-221 78-102 (483) 215 1mxg_A Alpha amylase; hyperthe 59.8 6.8 0.0003 17.0 3.4 23 198-220 87-109 (435) 216 1k2w_A Sorbitol dehydrogenase; 59.6 7 0.00031 17.0 9.5 93 103-206 7-109 (256) 217 2guy_A Alpha-amylase A; (beta- 58.5 7 0.00031 17.0 3.3 27 196-222 96-122 (478) 218 2qlc_A DNA repair protein RADC 57.8 7.5 0.00033 16.8 4.4 49 165-215 53-107 (126) 219 2c07_A 3-oxoacyl-(acyl-carrier 57.7 7.5 0.00034 16.7 9.3 141 101-266 43-196 (285) 220 1hvx_A Alpha-amylase; hydrolas 56.7 7.5 0.00033 16.8 3.2 16 81-98 83-98 (515) 221 3m1a_A Putative dehydrogenase; 56.6 7.8 0.00035 16.6 9.0 139 103-266 6-154 (281) 222 2osx_A Endoglycoceramidase II; 56.5 7.9 0.00035 16.6 6.3 16 201-216 245-262 (481) 223 2ixa_A Alpha-N-acetylgalactosa 55.8 8.1 0.00036 16.5 4.5 105 54-178 54-167 (444) 224 3c7b_A Sulfite reductase, diss 55.7 5 0.00022 18.0 2.2 20 103-122 135-154 (417) 225 3bc9_A AMYB, alpha amylase, ca 55.2 8.2 0.00036 16.5 3.2 26 196-221 207-232 (599) 226 1d3c_A Cyclodextrin glycosyltr 55.1 8.3 0.00037 16.5 3.6 29 195-223 113-141 (686) 227 1ht6_A AMY1, alpha-amylase iso 55.0 8.3 0.00037 16.5 3.4 26 197-222 68-93 (405) 228 1wza_A Alpha-amylase A; hydrol 54.5 8.5 0.00038 16.4 4.5 19 79-99 81-99 (488) 229 2a4k_A 3-oxoacyl-[acyl carrier 54.2 8.6 0.00038 16.4 8.8 93 103-206 8-110 (263) 230 3bmv_A Cyclomaltodextrin gluca 54.2 8.6 0.00038 16.4 3.6 28 196-223 115-142 (683) 231 1ea9_C Cyclomaltodextrinase; h 53.9 8.7 0.00039 16.3 4.4 60 164-223 167-244 (583) 232 1cyg_A Cyclodextrin glucanotra 53.9 8.7 0.00039 16.3 3.2 27 196-222 110-136 (680) 233 2zic_A Dextran glucosidase; TI 53.3 8.9 0.00039 16.3 7.7 16 327-342 465-480 (543) 234 1qho_A Alpha-amylase; glycosid 53.3 8.9 0.00039 16.3 3.2 26 196-221 106-131 (686) 235 3faw_A Reticulocyte binding pr 52.8 9 0.0004 16.2 3.4 29 196-224 368-396 (877) 236 2z1k_A (NEO)pullulanase; hydro 52.3 9.2 0.00041 16.2 3.8 23 198-220 97-119 (475) 237 2p0o_A Hypothetical protein DU 52.0 9.3 0.00041 16.1 3.8 22 191-214 153-174 (372) 238 2dh2_A 4F2 cell-surface antige 51.1 9.6 0.00043 16.0 3.6 17 327-343 334-350 (424) 239 2hmc_A AGR_L_411P, dihydrodipi 50.8 9.7 0.00043 16.0 7.6 36 178-218 151-187 (344) 240 1lwj_A 4-alpha-glucanotransfer 50.5 9.8 0.00044 16.0 3.8 27 196-222 68-94 (441) 241 3grp_A 3-oxoacyl-(acyl carrier 50.4 9.8 0.00044 16.0 8.9 131 103-258 29-169 (266) 242 1wzl_A Alpha-amylase II; pullu 50.4 9.8 0.00044 16.0 6.8 61 163-223 167-245 (585) 243 2wan_A Pullulanase; hydrolase, 49.8 10 0.00045 15.9 3.6 28 197-224 531-558 (921) 244 3h7a_A Short chain dehydrogena 48.7 10 0.00046 15.8 10.2 139 103-266 9-158 (252) 245 1tz9_A Mannonate dehydratase; 48.5 10 0.00047 15.8 4.1 17 199-215 199-215 (367) 246 2csu_A 457AA long hypothetical 47.8 2.4 0.00011 20.1 -0.4 17 53-69 73-89 (457) 247 1g5a_A Amylosucrase; glycosylt 47.3 11 0.00049 15.7 3.2 28 196-223 161-188 (628) 248 3gvc_A Oxidoreductase, probabl 47.1 11 0.00049 15.6 8.5 140 103-267 30-179 (277) 249 3g7s_A Long-chain-fatty-acid-- 47.0 11 0.00049 15.6 9.0 111 40-153 4-131 (549) 250 1j0h_A Neopullulanase; beta-al 46.9 11 0.00049 15.6 7.0 61 164-224 171-249 (588) 251 1q7b_A 3-ketoacyl-acyl, 3-oxoa 45.9 11 0.00051 15.5 8.7 93 103-206 7-109 (244) 252 2ffh_A Protein (FFH); SRP54, s 45.7 12 0.00051 15.5 3.9 132 82-220 74-222 (425) 253 3dhu_A Alpha-amylase; structur 45.6 12 0.00051 15.5 4.1 27 196-222 82-108 (449) 254 1gjw_A Maltodextrin glycosyltr 45.5 12 0.00052 15.5 3.4 31 194-224 178-208 (637) 255 1nff_A Putative oxidoreductase 45.1 12 0.00052 15.4 9.0 93 103-206 9-111 (260) 256 3edf_A FSPCMD, cyclomaltodextr 44.8 12 0.00053 15.4 7.3 62 162-223 141-224 (601) 257 3f9i_A 3-oxoacyl-[acyl-carrier 44.4 12 0.00054 15.4 7.4 94 103-206 16-114 (249) 258 2yrx_A Phosphoribosylglycinami 44.3 8.9 0.0004 16.3 2.0 19 387-405 405-423 (451) 259 1i4n_A Indole-3-glycerol phosp 44.1 12 0.00054 15.3 5.6 49 162-216 107-155 (251) 260 1qwg_A PSL synthase;, (2R)-pho 42.9 11 0.0005 15.6 2.3 114 73-216 46-166 (251) 261 3k8k_A Alpha-amylase, SUSG; al 42.9 13 0.00057 15.2 4.2 27 196-222 105-131 (669) 262 2p2s_A Putative oxidoreductase 42.8 13 0.00057 15.2 6.9 20 197-216 103-122 (336) 263 1oft_A SULA, hypothetical prot 42.4 13 0.00058 15.2 7.4 130 75-215 21-156 (161) 264 2v4j_A Sulfite reductase, diss 42.2 13 0.00057 15.2 2.5 41 81-122 113-157 (437) 265 1ceo_A Cellulase CELC; glycosy 41.2 13 0.0006 15.0 5.8 34 183-217 137-172 (343) 266 1hjs_A Beta-1,4-galactanase; 4 41.2 13 0.0006 15.0 4.5 34 189-222 51-84 (332) 267 1h1n_A Endo type cellulase ENG 41.0 14 0.0006 15.0 6.9 27 184-211 131-157 (305) 268 2tps_A Protein (thiamin phosph 41.0 14 0.0006 15.0 4.4 51 168-218 34-85 (227) 269 1wky_A Endo-beta-1,4-mannanase 40.2 14 0.00062 14.9 3.3 34 37-70 52-86 (464) 270 2fp4_A Succinyl-COA ligase [GD 39.1 14 0.00064 14.8 4.3 85 122-221 45-133 (305) 271 2z5l_A Tylkr1, tylactone synth 39.0 15 0.00065 14.8 11.6 17 242-258 384-400 (511) 272 2wc7_A Alpha amylase, catalyti 38.8 15 0.00065 14.8 3.6 15 328-342 406-420 (488) 273 1vjz_A Endoglucanase; TM1752, 38.8 15 0.00065 14.8 6.3 34 184-217 149-188 (341) 274 1a53_A IGPS, indole-3-glycerol 38.6 15 0.00066 14.8 4.1 49 162-216 109-157 (247) 275 1jbq_A Cystathionine beta-synt 37.9 15 0.00067 14.7 9.3 82 73-155 133-216 (435) 276 3hje_A 704AA long hypothetical 37.3 15 0.00069 14.6 5.0 27 334-360 392-428 (704) 277 2epl_X N-acetyl-beta-D-glucosa 37.3 15 0.00069 14.6 10.3 24 197-220 247-271 (627) 278 1g01_A Endoglucanase; alpha/be 36.8 16 0.0007 14.6 4.5 21 198-218 90-110 (364) 279 1xea_A Oxidoreductase, GFO/IDH 36.5 16 0.00071 14.6 3.4 68 102-177 65-138 (323) 280 2fvy_A D-galactose-binding per 36.3 13 0.00056 15.2 1.8 25 192-216 151-175 (309) 281 2fr1_A Erythromycin synthase, 35.8 16 0.00072 14.5 12.4 142 103-274 228-384 (486) 282 2o23_A HADH2 protein; HSD17B10 35.3 17 0.00074 14.4 9.5 93 103-206 14-122 (265) 283 1to3_A Putative aldolase YIHT; 34.9 17 0.00075 14.4 5.0 50 165-216 111-160 (304) 284 3ioy_A Short-chain dehydrogena 34.5 17 0.00076 14.4 8.7 142 103-267 10-169 (319) 285 2ew8_A (S)-1-phenylethanol deh 34.3 17 0.00076 14.3 10.1 139 103-267 9-158 (249) 286 3guy_A Short-chain dehydrogena 31.7 19 0.00084 14.1 8.0 93 104-206 4-102 (230) 287 1p9o_A Phosphopantothenoylcyst 31.6 19 0.00084 14.0 2.6 38 72-112 11-48 (313) 288 1ydw_A AX110P-like protein; st 31.2 19 0.00086 14.0 8.2 27 195-221 106-132 (362) 289 1vl8_A Gluconate 5-dehydrogena 31.1 19 0.00086 14.0 10.5 107 86-206 9-129 (267) 290 3kvo_A Hydroxysteroid dehydrog 31.0 19 0.00086 14.0 10.0 93 103-206 47-159 (346) 291 3gaf_A 7-alpha-hydroxysteroid 30.9 19 0.00086 14.0 8.6 141 102-267 12-164 (256) 292 3e96_A Dihydrodipicolinate syn 30.8 20 0.00087 14.0 6.4 76 56-136 33-118 (316) 293 3kzv_A Uncharacterized oxidore 30.5 20 0.00088 13.9 8.7 93 103-206 4-109 (254) 294 2h3h_A Sugar ABC transporter, 30.5 14 0.00061 15.0 1.2 31 102-132 59-89 (313) 295 2v4j_B Sulfite reductase, diss 28.9 21 0.00093 13.7 1.9 41 81-123 77-120 (381) 296 3edm_A Short chain dehydrogena 28.8 21 0.00094 13.7 8.5 93 103-206 10-117 (259) 297 1iv8_A Maltooligosyl trehalose 28.5 21 0.00095 13.7 3.3 14 347-360 417-430 (720) 298 3bww_A Protein of unknown func 27.8 22 0.00098 13.6 4.9 63 182-248 136-204 (307) 299 7a3h_A Endoglucanase; hydrolas 27.6 22 0.00098 13.6 4.9 11 200-210 155-165 (303) 300 3h5d_A DHDPS, dihydrodipicolin 27.6 22 0.00098 13.6 4.8 35 180-218 136-170 (311) 301 3dz1_A Dihydrodipicolinate syn 27.3 22 0.00099 13.6 7.4 133 56-219 29-172 (313) 302 2ho3_A Oxidoreductase, GFO/IDH 26.5 23 0.001 13.5 5.4 69 102-178 64-138 (325) 303 2an1_A Putative kinase; struct 26.4 23 0.001 13.4 3.2 19 104-122 66-84 (292) 304 3iv3_A Tagatose 1,6-diphosphat 25.1 24 0.0011 13.3 7.6 49 168-216 116-165 (332) 305 3ih1_A Methylisocitrate lyase; 24.8 25 0.0011 13.3 5.3 44 109-152 12-55 (305) 306 3lf2_A Short chain oxidoreduct 24.8 25 0.0011 13.3 10.0 140 103-267 9-163 (265) 307 3bzy_B ESCU; auto cleavage pro 24.0 26 0.0011 13.2 2.3 25 197-221 26-50 (83) 308 1v71_A Serine racemase, hypoth 23.7 26 0.0012 13.1 7.3 52 103-154 76-128 (323) 309 2pc8_A Hypothetical protein XO 23.3 26 0.0012 13.1 6.8 32 335-369 358-389 (400) 310 1edo_A Beta-keto acyl carrier 22.6 27 0.0012 13.0 9.5 130 104-258 4-147 (244) 311 3d0c_A Dihydrodipicolinate syn 22.4 27 0.0012 12.9 7.1 76 56-136 33-118 (314) 312 3imf_A Short chain dehydrogena 22.3 27 0.0012 12.9 9.6 94 103-206 7-113 (257) 313 2vos_A Folylpolyglutamate synt 22.1 28 0.0012 12.9 3.1 19 199-217 241-259 (487) 314 3ftp_A 3-oxoacyl-[acyl-carrier 21.8 28 0.0013 12.9 9.1 140 102-266 28-180 (270) 315 2cfc_A 2-(R)-hydroxypropyl-COM 21.8 28 0.0013 12.9 8.9 137 104-266 5-158 (250) 316 2h1i_A Carboxylesterase; struc 21.6 28 0.0013 12.8 7.5 27 98-125 116-142 (226) 317 1xi3_A Thiamine phosphate pyro 21.6 28 0.0013 12.8 5.0 55 164-220 25-79 (215) 318 3cpr_A Dihydrodipicolinate syn 21.2 29 0.0013 12.8 6.5 128 56-220 37-180 (304) 319 2pqm_A Cysteine synthase; OASS 21.0 29 0.0013 12.8 7.9 79 75-154 52-132 (343) 320 1o6d_A Hypothetical UPF0247 pr 20.9 29 0.0013 12.8 6.0 15 190-204 73-87 (163) 321 1p5j_A L-serine dehydratase; l 20.9 29 0.0013 12.7 6.5 101 77-191 73-176 (372) 322 3cxt_A Dehydrogenase with diff 20.6 30 0.0013 12.7 8.8 93 103-206 36-141 (291) 323 1xky_A Dihydrodipicolinate syn 20.6 30 0.0013 12.7 6.4 36 180-219 140-175 (301) 324 2i5i_A UPF0249 protein EF_3048 20.2 30 0.0014 12.6 7.8 51 165-215 100-156 (263) 325 1yxm_A Pecra, peroxisomal tran 20.1 30 0.0014 12.6 9.8 93 103-206 20-130 (303) 326 3kux_A Putative oxidoreductase 20.0 31 0.0014 12.6 7.2 39 102-141 69-107 (352) No 1 >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=549.48 Aligned_cols=386 Identities=22% Similarity=0.385 Sum_probs=345.1 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 9744688871466661578998878899999630378-983341567867887888999999999980878888788889 Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIE-GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGD 79 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~ 79 (406) |++++|...+... +...+.+.++.+ ..+ .+.|+|++|+||+.+ ++.+.+++.+++.++ .++|++..|. T Consensus 1 m~~a~r~~~~~~s--~~~~i~~~a~~~-------~~~G~dvi~l~~G~p~~~~-p~~v~~a~~~a~~~~-~~~Y~~~~G~ 69 (388) T 1j32_A 1 MKLAARVESVSPS--MTLIIDAKAKAM-------KAEGIDVCSFSAGEPDFNT-PKHIVEAAKAALEQG-KTRYGPAAGE 69 (388) T ss_dssp CCCCHHHHTSCCC--SSTTTHHHHHHH-------HTTTCCCEECCCSSCSSCC-CHHHHHHHHHHHHTT-CCSCCCTTCC T ss_pred CCHHHHHHCCCCC--HHHHHHHHHHHH-------HHCCCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCC T ss_conf 9552474549957--999999999999-------8779984899999899998-899999999998558-8778999889 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCC Q ss_conf 88999999999986488678867078824872789999999972001010131055138999998299699986044666 Q T0591 80 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSA 159 (406) Q Consensus 80 ~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~ 159 (406) ++||++|++|+.+++|+.+++ ++|++|+|++++|.++++++++|||.|++++|+|+.|...++..|++++.+|++ T Consensus 70 ~~lR~aia~~~~~~~g~~~~~-e~i~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~---- 144 (388) T 1j32_A 70 PRLREAIAQKLQRDNGLCYGA-DNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTT---- 144 (388) T ss_dssp HHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC---- T ss_pred HHHHHHHHHHHHHHCCCCCCC-CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECC---- T ss_conf 999999999988741768881-229986878999999999980998989991898387999999849989997245---- Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCC Q ss_conf 77666778899999850254034215666432334437899999999863787578417502355688876522332102 Q T0591 160 DETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 239 (406) Q Consensus 160 ~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 239 (406) .+++|.+|++++++.+++++|++++||||||||.+++.+++++|+++|++||++||+||+|+++.|++.++.++...... T Consensus 145 ~e~~~~~d~~~l~~~~~~~~~~~~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~ 224 (388) T 1j32_A 145 VETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE 224 (388) T ss_dssp GGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH T ss_pred CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCHHHHCCC T ss_conf 55566889999997388898399989998987701899999999852110697797203101202589888788895888 Q ss_pred CCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 67868998504001046311211433258999999987520367612457999999985652589999999999999999 Q T0591 240 DAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELL 319 (406) Q Consensus 240 ~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~ 319 (406) ..+++|+++||||.|++||||+||+++|+++++.+.+.+.....+++.+.|.++..++.+.++++++.+..|+++++.+. T Consensus 225 ~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~aa~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (388) T 1j32_A 225 AYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYML 304 (388) T ss_dssp HHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCHHHHHCHHHHEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67848999776665248275628899889999999887763366787799999999986459999999999999999999 Q ss_pred HHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH Q ss_conf 99972799455358873078776688788989999999986891896161026799985899850997999999999999 Q T0591 320 HVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVT 399 (406) Q Consensus 320 ~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~ 399 (406) +.|++++|+.+..|+||||+|++++..+.++.+|+++|++++||.++||+.|| +++|+|++|+.++|++++|++||++ T Consensus 305 ~~l~~~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~--~~~~iRis~~~~~e~i~~a~~rl~~ 382 (388) T 1j32_A 305 DALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG--ADDCIRLSYATDLDTIKRGMERLEK 382 (388) T ss_dssp HHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT--CTTBEEEECCSCHHHHHHHHHHHHH T ss_pred HHHHHCCCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCC--CCCEEEEEEECCHHHHHHHHHHHHH T ss_conf 99974799775688835899897888799999999999986999998264359--9996999980899999999999999 Q ss_pred HHHHH Q ss_conf 99985 Q T0591 400 LVERY 404 (406) Q Consensus 400 ~~~~~ 404 (406) +++.+ T Consensus 383 ~l~~l 387 (388) T 1j32_A 383 FLHGI 387 (388) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99975 No 2 >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: PLP; 2.33A {Pyrococcus furiosus dsm 3638} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=507.51 Aligned_cols=356 Identities=22% Similarity=0.338 Sum_probs=314.5 Q ss_pred CCCEEECCCCC---CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH Q ss_conf 98334156786---788788899999999998087888878888988999999999986488678867078824872789 Q T0591 38 GRPVDFSHGDV---DAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 114 (406) Q Consensus 38 ~~~i~ls~G~p---d~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l 114 (406) .+.|+|++|+| |+ .|++.+.+++.+++.++ .++|++..|.++||++||+|+++++|+++++ ++|++|+|+++++ T Consensus 38 ~~vi~l~~G~P~~~df-~~p~~i~~a~~~a~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-~~i~~t~G~~~~l 114 (406) T 1xi9_A 38 IKVIRLNIGDPVKFDF-QPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITP-DDVRVTAAVTEAL 114 (406) T ss_dssp CCCEECCCCCGGGTTC-CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHH T ss_pred CCEEECCCCCCCCCCC-CCCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCEEECCCHHHH T ss_conf 9608998999997899-99799999999999638-9988998679999999999777635776566-6304512311121 Q ss_pred HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 99999997200101013105513899999829969998604466677666778899999850254034215666432334 Q T0591 115 FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVV 194 (406) Q Consensus 115 ~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~ 194 (406) ..++.++++|||+|++++|+|+.|...+..+|++++.+++. ++++|.+|++++++.+++++|++++||||||||.+ T Consensus 115 ~~~~~~~~~~Gd~Vl~~~P~Y~~~~~~~~~~g~~~v~v~~~----~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPTG~~ 190 (406) T 1xi9_A 115 QLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTI----EEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGAL 190 (406) T ss_dssp HHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEE----GGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCC T ss_pred HHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECC----CCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHH T ss_conf 01223203799989982783331077898739767997511----34586657799999742576589981899974512 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH--HH--- Q ss_conf 4378999999998637875784175023556888765223321026786899850400104631121143325--89--- Q T0591 195 YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS--RA--- 269 (406) Q Consensus 195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~--~~--- 269 (406) ++.+++++|+++|+++|++||+||+|.++.|++..+++... ...+++|+++||||.|++||||+||++++ .. T Consensus 191 ~s~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~~~~~~ 267 (406) T 1xi9_A 191 YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSL---TKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLS 267 (406) T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHH---CSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTH T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCHHCCCCCCCCCCHHHC---CCCCCEEEEECCCHHCCCCCCCEECCCCCCHHHHHH T ss_conf 30899999985442248011123101102333455570211---788888999586032405400004411278799999 Q ss_pred -HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC-C Q ss_conf -99999987520367612457999999985652589999999999999999999727994553588730787766887-8 Q T0591 270 -IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-A 347 (406) Q Consensus 270 -~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~-~ 347 (406) +.+.+..+ .....+++.+.|.++..++...+.|+++.++.++++++.+.+.|.+++++.+..|+||||+|++++.. . T Consensus 268 ~~~~~~~~~-~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~~l~~~L~~~~~~~~~~p~gg~~l~~~l~~~~~ 346 (406) T 1xi9_A 268 EVREAIDRL-ARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW 346 (406) T ss_dssp HHHHHHHHH-HHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC T ss_pred HHHHHHHHH-HCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEECCCCCC T ss_conf 999999997-2478788889999999986086999999999999999999999986699410489854798177788899 Q ss_pred CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 898999999998689189616102679998589985099799999999999999985 Q T0591 348 VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 348 ~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) .++.+|+.+|++++||.++||+.||..+++|+||||+.++|++++|++||+++++++ T Consensus 347 ~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~iRis~~~~~e~l~~a~~rl~~~l~e~ 403 (406) T 1xi9_A 347 KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 403 (406) T ss_dssp SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH T ss_conf 999999999999799999847342889989799997389999999999999999998 No 3 >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Probab=100.00 E-value=0 Score=513.66 Aligned_cols=359 Identities=16% Similarity=0.269 Sum_probs=318.7 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 83341567867887888999999999980878888788889889999999999864886788670788248727899999 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 118 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~ 118 (406) +.|+|++|+||+.+ ++.+++++.+++..+..++|++..|.++||++|++|+++++|.++++ ++|++|+|++++|++++ T Consensus 58 ~vi~L~~G~pd~~~-p~~~~~a~~~a~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-e~I~vt~G~~~al~~~~ 135 (447) T 3b46_A 58 ELINLGQGFFSYSP-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA-ENVTVTTGANEGILSCL 135 (447) T ss_dssp CCEECCCCSCSSCC-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG-GGEEEESHHHHHHHHHH T ss_pred CEEECCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHEEEECCHHHHHHHHH T ss_conf 86889999899999-99999999999758877888998476999999999998986889885-43999479999999999 Q ss_pred HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCC------CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 9997200101013105513899999829969998604466------6776667788999998502540342156664323 Q T0591 119 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS------ADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAG 192 (406) Q Consensus 119 ~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~------~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG 192 (406) .++++|||+|++++|+|+.|...++.+|++++.||++... ...++|++|++++++++++++++++++||||||| T Consensus 136 ~~l~~pGd~Vlv~~P~y~~~~~~~~~~G~~~v~vpl~~~~~~~~~~~~~~~~~~d~e~le~~i~~~~~~ii~~~p~NPtG 215 (447) T 3b46_A 136 MGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIG 215 (447) T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTC T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCC T ss_conf 99739969899868984899999998099589995675322332234333458799999975236882899689989888 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH-HHHH Q ss_conf 344378999999998637875784175023556888765223321026786899850400104631121143325-8999 Q T0591 193 VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAII 271 (406) Q Consensus 193 ~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~-~~~i 271 (406) .+++.+++++|+++|++||++||+||+|+++.|++.. .++........+++|+++||||.|++||||+||++++ .+++ T Consensus 216 ~~~~~~~~~~l~~~a~~~~~~vi~De~Y~~l~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ii~~~~~~~ 294 (447) T 3b46_A 216 KVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSF-TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELL 294 (447) T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC-CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHH T ss_pred CCCCHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCCC-CCHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHH T ss_conf 5432999999999752041254200123442148755-312653345521699985574345688622137896689999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCC-- Q ss_conf 99998752036761245799999998565--25899999999999999999997279945535887307877668878-- Q T0591 272 ARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-- 347 (406) Q Consensus 272 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~-- 347 (406) +.+.+.+.....+++++.|.+++.++.+. ..++++.++.|+++++.+.+.|.++ |+++..|+||||+|+++++.. T Consensus 295 ~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~r~~~~~r~~~l~~~L~~~-g~~~~~p~gg~~~~~d~~~~~~~ 373 (447) T 3b46_A 295 SYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKIP 373 (447) T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCCC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEEEEEECCCCCCC T ss_conf 99999987513578789999999999752254699999999999999999999868-98465588324998866345886 Q ss_pred ------------CCHHHHHHHHHHHCCEEEEECCCCCC-----CCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf ------------89899999999868918961610267-----9998589985099799999999999999 Q T0591 348 ------------VAPAEFVKILRLQAGVVVTPGTEFSP-----HTADSVRLNFSQDHEAAVAAARRIVTLV 401 (406) Q Consensus 348 ------------~~~~~~~~~Ll~~~gV~v~pG~~Fg~-----~~~~~iRis~~~~~e~l~~al~rl~~~~ 401 (406) .++.+|+.+|++++||+++||+.|+. .+++|||+||+.++|+|++|++||+++- T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~Ll~e~gV~v~PGs~F~~~~~~~~~~~~iRis~~~~~e~l~~a~~rL~~l~ 444 (447) T 3b46_A 374 EDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLLK 444 (447) T ss_dssp TTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGGGG T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 31135777612354899999999968999974355167887777799899996598999999999999999 No 4 >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=501.02 Aligned_cols=360 Identities=19% Similarity=0.282 Sum_probs=309.8 Q ss_pred CCEEECCCCCCCCCC---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC------CCCCCCCCEEEEECC Q ss_conf 833415678678878---88999999999980878888788889889999999999864------886788670788248 Q T0591 39 RPVDFSHGDVDAHEP---TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFT------GAPVDARDGLIITPG 109 (406) Q Consensus 39 ~~i~ls~G~pd~~~p---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~------g~~~~~~~~I~it~G 109 (406) ..|+|++|+||+..| ++.+++++.+++.....++|++..|+++||++||+|+++++ |..+++ ++|++|+| T Consensus 34 ~vi~l~~G~p~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~~~~~-~~I~it~G 112 (416) T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK-DNVVLCSG 112 (416) T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG-GGEEEESH T ss_pred CCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCEEECCC T ss_conf 82688588799999853209999999998628877788998578999999999998744754356888880-41898766 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCC Q ss_conf 72789999999972001010131055138999998299699986044666776667788999998502540342156664 Q T0591 110 TQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNN 189 (406) Q Consensus 110 ~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N 189 (406) ++++|.++++++++|||.|++++|+|+.|...++.+|+++++++++. +++|.++++++++...+++|++++||||| T Consensus 113 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~p~N 188 (416) T 1bw0_A 113 GSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRP----ENDWEADLDEIRRLKDDKTKLLIVTNPSN 188 (416) T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG----GGTTEECHHHHHHHCCTTEEEEEEESSCT T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCC----CCCCCCCHHHHHHHCCCCCCEEEECCCCC T ss_conf 99999999999728999899804887403666642695667632554----44542259999985045566788689969 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHH--CCCCCCEEEEEECCHHCCCCCCCCHHHHHH Q ss_conf 323344378999999998637875784175023556888765223321--026786899850400104631121143325 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEA--AVDAENVVTIMGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~ 267 (406) |||.+++.+++++|+++|++|+++||+||+|.+|.|++..+.+..... .....+++++.|+||.|++||||+||++++ T Consensus 189 PtG~~~~~e~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~GlRvG~~v~~ 268 (416) T 1bw0_A 189 PCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYV 268 (416) T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEC T ss_conf 88746409999998756764196477401013330278788714432011234431113457766677786587999953 Q ss_pred H------HHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEE Q ss_conf 8------999999987520367612457999999-985652589999999999999999999727994553588730787 Q T0591 268 R------AIIARMEKLQAIVSLRAAGYSQAVLRG-WFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLF 340 (406) Q Consensus 268 ~------~~i~~l~~~~~~~~~~~~~~~q~a~~~-~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w 340 (406) + +++.....+... ..++++..|..+.. +..+.++++.+.++.++++|+.+.+.|.+..|+.+..|+||||+| T Consensus 269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~yl~ 347 (416) T 1bw0_A 269 DPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLM 347 (416) T ss_dssp CTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEE T ss_pred CHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEE T ss_conf 2566678999988764222-347727888889998750222211035689999999999999865895751789515998 Q ss_pred EECCC----CCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 76688----7889899999999868918961610267999858998509979999999999999998569 Q T0591 341 PRLPK----LAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 341 ~~~~~----~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ra 406 (406) ++++. ...++.+|+++|++++||.++||+.|| +++|+||||+.++|++++|++||+++++||.| T Consensus 348 ~~~~~~~~~~~~~~~e~~~~ll~~~gV~v~PG~~F~--~~g~~Ris~~~~~e~l~eai~Rl~~~~~r~~a 415 (416) T 1bw0_A 348 SRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH--APGFTRLTTTRPVEVYREAVERIKAFCQRHAA 415 (416) T ss_dssp EEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECCSCHHHHHHHHHHHHHHHHHHBC T ss_pred EECCHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCC--CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC T ss_conf 957824447888999999999996999999662148--99949999648999999999999999996279 No 5 >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, lyase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Probab=100.00 E-value=0 Score=504.65 Aligned_cols=365 Identities=24% Similarity=0.345 Sum_probs=324.3 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 898334156786788788899999999998087-8888788889889999999999864886788670788248727899 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGG-VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) +.+.|+|++|+||+++ ++.+.+++.+++..+. .++|++..|+++||++||+|+++++|.+++|.++|++|+|++++|. T Consensus 27 ~~dvI~l~~G~pd~~~-p~~v~~a~~~a~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~p~~~I~it~G~~~al~ 105 (422) T 3fvs_A 27 EHDVVNLGQGFPDFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422) T ss_dssp TSCCEECCCSSCSSCC-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH T ss_pred CCCCEECCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH T ss_conf 9998888898899988-999999999998579744688998678999999999999985899881011664358604530 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCC------CCCCCCCCCHHHHHHHHCCCCEEEECCCCCC Q ss_conf 9999997200101013105513899999829969998604466------6776667788999998502540342156664 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS------ADETRAGLDLTGLEEAFKAGARVFLFSNPNN 189 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~------~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N 189 (406) +++.++++|||.|++++|+|+.|...+...|++++.++++... ..+++|.+|.+++.+...++++++++||||| T Consensus 106 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~l~~p~N 185 (422) T 3fvs_A 106 TAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNN 185 (422) T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCT T ss_pred CCHHHCCCCCCEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCC T ss_conf 31121047997364045554016899997498750135665422234433112102234431010001344124057776 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHH Q ss_conf 32334437899999999863787578417502355688876522332102678689985040010463112114332589 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRA 269 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~ 269 (406) |||.+++.+++++|+++|++||++||+||+|+++.|++..+.++.... ...+++|+++||||.|++||+|+||++++++ T Consensus 186 PtG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~GlRvG~~i~~~~ 264 (422) T 3fvs_A 186 PLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLP-GMWERTLTIGSAGKTFSATGWKVGWVLGPDH 264 (422) T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGST-TTGGGEEEEEEHHHHHTCGGGCCEEEECCHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCHHHCC-CCCCCCEECCCCCCCCCCCCCCEECCCCCCC T ss_conf 545668999999999998864975222335677615898987853355-6546612325578078899775402124444 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEE Q ss_conf 999999875203676124579999999856-------5258999999999999999999972799455358873078776 Q T0591 270 IIARMEKLQAIVSLRAAGYSQAVLRGWFDE-------APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPR 342 (406) Q Consensus 270 ~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~ 342 (406) ++..+..++.....+++++.|.++..++.. ...++...+..++++|+.+.+.|++. |+++..|+||||+|++ T Consensus 265 ~i~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~gg~f~~~~ 343 (422) T 3fvs_A 265 IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITD 343 (422) T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCCCCEEEEEE T ss_conf 222223233333233221003678998762223333343322331011000110355555552-2644489832399897 Q ss_pred CCCC------------CCCHHHHHHHHHHHCCEEEEECCCCCC-----CCCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 6887------------889899999999868918961610267-----9998589985099799999999999999985 Q T0591 343 LPKL------------AVAPAEFVKILRLQAGVVVTPGTEFSP-----HTADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 343 ~~~~------------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-----~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) +++. ..++.+|+++|++++||.++||+.|+. .+++|+|+||+.++|++++|++||+++..++ T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~e~l~~a~~rL~~~~~~l 422 (422) T 3fvs_A 344 ISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVEL 422 (422) T ss_dssp CHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHCC T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC T ss_conf 7331233200013455535999999999979999984545257877677799799996489999999999999999759 No 6 >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus HB8} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Probab=100.00 E-value=0 Score=501.34 Aligned_cols=378 Identities=24% Similarity=0.362 Sum_probs=324.3 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 44688871466661578998878899999630378983341567867887888999999999980878888788889889 Q T0591 3 IEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGI 82 (406) Q Consensus 3 i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~L 82 (406) ++.|...+ ...+...+.+.++++. .+ ..+.|+|++|+||+.. +|.+.+++.+++.++ .++|++..|.++| T Consensus 4 ~s~r~~~~--~ps~~~~i~~~a~~~~--~~----G~~vi~l~~g~p~~~~-p~~i~ea~~~~~~~~-~~~Y~~~~G~~~l 73 (385) T 1b5p_A 4 LSRRVQAM--KPSATVAVNAKALELR--RQ----GVDLVALTAGEPDFDT-PEHVKEAARRALAQG-KTKYAPPAGIPEL 73 (385) T ss_dssp CCHHHHHC--CCCHHHHHHHHHHHHH--HT----TCCCEECCCSSCSSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHH T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHH--HC----CCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCCHHH T ss_conf 77998738--9888999999999999--77----9981899999899998-899999999998568-8789999888999 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCC Q ss_conf 99999999986488678867078824872789999999972001010131055138999998299699986044666776 Q T0591 83 RDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADET 162 (406) Q Consensus 83 r~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~ 162 (406) |++|++|+.+++|+.+++ ++|++|+|+++++..+++++++|||.|++++|+|+.|...+..+|+++++++++ +++ T Consensus 74 r~~ia~~~~~~~~~~~~~-~~i~it~G~~~~l~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~~~~~----~~~ 148 (385) T 1b5p_A 74 REALAEKFRRENGLSVTP-EETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETL----PEE 148 (385) T ss_dssp HHHHHHHHHHTTCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECC----GGG T ss_pred HHHHHHHHHHCCCCCCCC-CEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECC----CCC T ss_conf 999987543214545683-318987877999999999957996989986898477999999809878999613----211 Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC Q ss_conf 66778899999850254034215666432334437899999999863787578417502355688876522332102678 Q T0591 163 RAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAE 242 (406) Q Consensus 163 ~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 242 (406) +|.+|+++++++++++++++++||||||||.++|.+++++|+++|++||++||+||+|.++.|++.+.++... ..+ T Consensus 149 ~~~~d~~~l~~~~~~~~~~~~i~~P~NPtG~~~s~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~----~~~ 224 (385) T 1b5p_A 149 GFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV----APE 224 (385) T ss_dssp TTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT----CTT T ss_pred CCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCHHHC----CCC T ss_conf 4578999999737889769998999897561179999999999999859289996757862279988997781----899 Q ss_pred CEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH Q ss_conf 6899850400104631121143325899999998752036761245799999998565---2589999999999999999 Q T0591 243 NVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELL 319 (406) Q Consensus 243 ~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~ 319 (406) ++|+++||||.|++||+|+||+++|+++++.+..++.....+++.+.|.++..++... ..+..+.+..++++++.+. T Consensus 225 ~~i~~~s~SK~~~~~GlR~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 304 (385) T 1b5p_A 225 HTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLL 304 (385) T ss_dssp TEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEECCHHHCCCHHHHEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 77999564464338185759999899999999999886046896788888888763122005789999999987447788 Q ss_pred HHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH Q ss_conf 99972799455358873078776688788989999999986891896161026799985899850997999999999999 Q T0591 320 HVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVT 399 (406) Q Consensus 320 ~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~ 399 (406) +.+... |+.+..|+||||+|+++++...++.++.+.| .++||+++||+.|+. ++|+|++|+.++|++++|++||++ T Consensus 305 ~~l~~~-g~~~~~p~gg~f~~~~~~~~~~d~~~~~~~L-~e~gV~v~PG~~F~~--~g~iRis~a~~~e~l~~al~rL~~ 380 (385) T 1b5p_A 305 EGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEVRAAERL-LEAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFAR 380 (385) T ss_dssp HHHHHH-TCCBCCCSBTTEEEEECTTTCSSHHHHHHHH-HHTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGG T ss_pred HHHCCC-CCEEECCCCEEEEEEECCCCCCCHHHHHHHH-HHCCEEEEECCCCCC--CCEEEEEECCCHHHHHHHHHHHHH T ss_conf 751147-8557568950799684689999999999999-978979994722589--997999975999999999999999 Q ss_pred HHHH Q ss_conf 9998 Q T0591 400 LVER 403 (406) Q Consensus 400 ~~~~ 403 (406) +++| T Consensus 381 ~L~~ 384 (385) T 1b5p_A 381 VLGR 384 (385) T ss_dssp GC-- T ss_pred HHHC T ss_conf 9843 No 7 >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Probab=100.00 E-value=0 Score=507.61 Aligned_cols=361 Identities=20% Similarity=0.317 Sum_probs=324.5 Q ss_pred CCCCCC-EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 378983-3415678678878889999999999808788887888898899999999998648867886707882487278 Q T0591 35 PIEGRP-VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 35 ~~~~~~-i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) ...+.+ |||++|+||+++| +.+.+++.+++..+..++|++..|+++||++||+|+++++|++++++++|++|+|++++ T Consensus 43 ~~~~~~vI~l~~G~p~~p~p-~~i~eal~~a~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~~I~it~Gs~~a 121 (404) T 2o1b_A 43 EHGPLPLINMAVGIPDGPTP-QGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404) T ss_dssp CCCSSCCEECCCCSCSSCCC-HHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH T ss_pred HCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHH T ss_conf 62999779831888999878-99999999997487657889874789999999999998649999965579992698999 Q ss_pred HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 99999999720010101310551389999982996999860446667766677889999985025403421566643233 Q T0591 114 LFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV 193 (406) Q Consensus 114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~ 193 (406) |++++.++++|||.|++++|+|+.|...+..+|+++++++++ ++++.+|.++++....+++++++++|||||||. T Consensus 122 l~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~~v~~~~~-----~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~ 196 (404) T 2o1b_A 122 LVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE-----PPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGS 196 (404) T ss_dssp HHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC-----TTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCC T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECC-----CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCE T ss_conf 999999972899989985687632578999759789852025-----876667889985320247549997899799871 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 44378999999998637875784175023556888765223321026786899850400104631121143325899999 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIAR 273 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~ 273 (406) +++.+++++|+++|++++++|++||+|.++.|++..+...... ...+++|+++||||.|++||||+||+++++++++. T Consensus 197 ~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~~I~~~S~SK~~~~~G~RiG~~~~~~~~~~~ 274 (404) T 2o1b_A 197 TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASE--NGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQA 274 (404) T ss_dssp CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGST--THHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHH T ss_pred EEECHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCHHHCC--CCCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHHH T ss_conf 2212133433321145671477653100103478887753335--67687799836855666876752222202156678 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHH Q ss_conf 99875203676124579999999856525899999999999999999997279945535887307877668878898999 Q T0591 274 MEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEF 353 (406) Q Consensus 274 l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~ 353 (406) +.+++.....+.+...|.+....+...++++++.++.++++|+.+.+.|++. |+.+..|+||||+|+++++ +.++.+| T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~p~gg~f~~~~~~~-~~d~~~~ 352 (404) T 2o1b_A 275 LKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPP-GYDSEQF 352 (404) T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECCT-TCCHHHH T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEECCCCEEEEEEECCC-CCCHHHH T ss_conf 8876401345775699999998640203567899998998999999999748-9956757942699998999-9899999 Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 9999986891896161026799985899850997999999999999999856 Q T0591 354 VKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 354 ~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) +++|++++||.++||+.||..+++|+||||+.++|++++|++||++++++|| T Consensus 353 ~~~ll~e~gV~v~PG~~F~~~g~~~iRis~~~~~e~l~~a~~RL~~~~~~y~ 404 (404) T 2o1b_A 353 EQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLYE 404 (404) T ss_dssp HHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGGGC T ss_pred HHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC T ss_conf 9999973999999265548899987999971999999999999999999649 No 8 >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransferase); PLP-binding enzyme, lysine biosynthesis, structural genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis H37RV} Probab=100.00 E-value=0 Score=503.44 Aligned_cols=362 Identities=25% Similarity=0.341 Sum_probs=327.9 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 89833415678678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +...|||++|+||+++| +.+.+++.+++.. ..++|++..|.++||++||+|+++++|++++++++|++|+|+++++.+ T Consensus 24 ~~~~I~l~~G~Pd~~~p-~~i~~al~~a~~~-~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~~I~vt~G~~~~l~~ 101 (411) T 2o0r_A 24 RIGAVNLGQGFPDEDGP-PKMLQAAQDAIAG-GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411) T ss_dssp TTTCEESSCSSCSSCCC-HHHHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH T ss_pred CCCEEEECCCCCCCCCC-HHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH T ss_conf 79927803989999888-9999999999856-998989997889999999999999858999977779983780999999 Q ss_pred HHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 99999720010101310551389999982996999860446667766677889999985025403421566643233443 Q T0591 117 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYS 196 (406) Q Consensus 117 ~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s 196 (406) +++++++|||.|++++|+|+.|...+..+|.+++.++++. +++.+.+|++++++++++++|++++||||||||.+++ T Consensus 102 ~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~---~~~~~~~d~~~l~~~~~~~~~~i~l~nP~NPtG~~~s 178 (411) T 2o0r_A 102 AVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVP---DGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLS 178 (411) T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEE---ETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCC T ss_pred HHHHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCC---CCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCC T ss_conf 9997448999799788877306899998499544565563---1246678899999727899749998999598774555 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 78999999998637875784175023556888765223321026786899850400104631121143325899999998 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK 276 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~ 276 (406) .+++++|+++|++++++||+||+|.++.+++...++.... ..+.++++++.|+||.+++||+|+||+++++++++.+.+ T Consensus 179 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~GlRiG~~~~~~~~~~~~~~ 257 (411) T 2o0r_A 179 ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF-DGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRA 257 (411) T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS-TTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHH T ss_pred HHHCCCHHHHCCCCEEEEEEECCCCHHCCCCCCCCCHHHH-CCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCHHHHHHHH T ss_conf 5540211431255425898441210111578777755552-144445444557620246874453644302347999999 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCC-CCHHHHHH Q ss_conf 75203676124579999999856525899999999999999999997279945535887307877668878-89899999 Q T0591 277 LQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-VAPAEFVK 355 (406) Q Consensus 277 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~-~~~~~~~~ 355 (406) .+...+.+++.+.|.+++.++.+.++++++.+..++++|+.+.+.|+++ |+.+..|+||||+|+++...+ .++.+|++ T Consensus 258 ~~~~~~~~~~~~~q~a~~~~l~~~~~~l~~~r~~~~~~r~~l~~~L~~~-g~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ 336 (411) T 2o0r_A 258 AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLGYDDSTEFCA 336 (411) T ss_dssp HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGTCCCHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEECCCCCCCCHHHHHH T ss_conf 9864365554699999999984861779999999999999999988862-978717980699988457789999999999 Q ss_pred HHHHHCCEEEEECCCCCCCCC-----------CEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 999868918961610267999-----------85899850997999999999999999856 Q T0591 356 ILRLQAGVVVTPGTEFSPHTA-----------DSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 356 ~Ll~~~gV~v~pG~~Fg~~~~-----------~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) +|++++||+++||+.|+..++ +|+||||+.++|++++|++||+++++|+. T Consensus 337 ~Ll~e~gV~v~PG~~F~~~~~~~~~~~~~~~~~~iRis~~~~~~~l~ea~~rl~~~ler~a 397 (411) T 2o0r_A 337 ALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA 397 (411) T ss_dssp HHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC--- T ss_pred HHHHHCCEEEECCHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC T ss_conf 9998689999724575888777555554567887999964999999999999999985126 No 9 >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C- terminal domain, open alpha-beta structure.; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Probab=100.00 E-value=0 Score=496.89 Aligned_cols=381 Identities=16% Similarity=0.203 Sum_probs=321.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 46888714666615789988788999996303789833415678678878889999999999808788887888898899 Q T0591 4 EAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIR 83 (406) Q Consensus 4 ~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr 83 (406) ++-+.|.++...++..+... ....+.|+|++|+||+++ +|.+.+++.+++..+ .++|++..| ++|| T Consensus 5 ~~~~~r~~~~s~kwd~~~~~-----------~~~~dvi~l~igd~df~~-p~~i~~al~~a~~~~-~~~Y~~~~g-~~lr 70 (390) T 1d2f_A 5 SKVVDRHGTWCTQWDYVADR-----------FGTADLLPFTISDMDFAT-APCIIEALNQRLMHG-VFGYSRWKN-DEFL 70 (390) T ss_dssp ------------------------------------CEECCSSSCSSCC-CHHHHHHHHHHHTTC-CCCCCCSCC-HHHH T ss_pred CCCCCCCCCCCHHHHHHHHH-----------CCCCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCC-HHHH T ss_conf 98766799984778778876-----------699987872588969999-899999999999679-989989989-8999 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCC Q ss_conf 99999999864886788670788248727899999999720010101310551389999982996999860446667766 Q T0591 84 DLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETR 163 (406) Q Consensus 84 ~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~ 163 (406) ++||+|+++++|+++++ ++|++|+|++++|+++++++++|||.|++++|+|+.|...+...|.++++++++. .+++ T Consensus 71 ~aia~~~~~~~g~~~~~-e~i~vt~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~---~~~~ 146 (390) T 1d2f_A 71 AAIAHWFSTQHYTAIDS-QTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEK---QADG 146 (390) T ss_dssp HHHHHHHHHHSCCCCCG-GGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEE---CSSS T ss_pred HHHHHHHHHHHCCCCCH-HEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCC---CCCC T ss_conf 99999999986889882-1399874499999999999808998788668885025899997187588400136---7887 Q ss_pred CCCCHHHHHHHHC-CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC Q ss_conf 6778899999850-254034215666432334437899999999863787578417502355688876522332102678 Q T0591 164 AGLDLTGLEEAFK-AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAE 242 (406) Q Consensus 164 ~~~d~~~l~~~~~-~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 242 (406) |.+|++++++.++ +++|++++||||||||.++|.+++++|+++|+++|++||+||+|.+|.|++...+++... ..+ T Consensus 147 ~~~d~~~~~~~~~~~~~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~---~~~ 223 (390) T 1d2f_A 147 WFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV---ARG 223 (390) T ss_dssp EECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT---CCS T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCHHHHH---HCC T ss_conf 65798999998617896699989987987665069999986420000223676305533000057764514442---014 Q ss_pred CEEEEEECCHHCCCCCCCCHHHHHH-HH-HHHHHHHHHHHCCCCHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6899850400104631121143325-89-999999875203676124-57999999985652589999999999999999 Q T0591 243 NVVTIMGPSKTESLSGYRLGVAFGS-RA-IIARMEKLQAIVSLRAAG-YSQAVLRGWFDEAPGWMEDRIARHQAIRDELL 319 (406) Q Consensus 243 ~~i~~~S~SK~~~~~GlRiG~~~~~-~~-~i~~l~~~~~~~~~~~~~-~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~ 319 (406) +++++.|+||.|++||+|+||++.+ +. ....+..++.....+.+. ..|.++..++...+.+.++.++.++++++.+. T Consensus 224 ~~i~~~s~SK~~~~~GlR~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (390) T 1d2f_A 224 DWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIA 303 (390) T ss_dssp SEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred CEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 31430466655565756530278528689999999876504677753899999999873441122235677999999999 Q ss_pred HHHHH-CCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHH Q ss_conf 99972-79945535887307877668878898999999998689189616102679998589985099799999999999 Q T0591 320 HVLRG-CEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIV 398 (406) Q Consensus 320 ~~L~~-~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~ 398 (406) +.|.. ++++.+..|+||||+|+++++.+.++.+|+++|++++||+++||+.||..+++|+||||+.++|++++|++||+ T Consensus 304 ~~l~~~~~~~~~~~p~gg~~~~~~l~~~~~d~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~ 383 (390) T 1d2f_A 304 DKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLI 383 (390) T ss_dssp HHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 99996489872635884139989777899999999999998699999836231889998799997388999999999999 Q ss_pred HHHHHHC Q ss_conf 9999856 Q T0591 399 TLVERYR 405 (406) Q Consensus 399 ~~~~~~r 405 (406) ++++++| T Consensus 384 ~~l~~lr 390 (390) T 1d2f_A 384 NAIRAVR 390 (390) T ss_dssp HHHHHHC T ss_pred HHHHHCC T ss_conf 9999639 No 10 >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Probab=100.00 E-value=0 Score=497.73 Aligned_cols=360 Identities=21% Similarity=0.316 Sum_probs=322.4 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 8334156786788788899999999998087--88887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGG--VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) ..|||++|+||+.+ ++.+++++.+++.+.. .++|++..|.++||++||+|+++++|++++|.++|++|+|++++|.+ T Consensus 38 ~~I~L~~G~Pd~~~-p~~v~~a~~~a~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~p~~~I~it~G~~~al~~ 116 (429) T 1yiz_A 38 KPLNLGQGFPDYHA-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA 116 (429) T ss_dssp CCEECCSSSCSSCC-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH T ss_pred CCEECCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCHHHCC T ss_conf 96876687998988-99999999999838996676899997899999999998899849988814608986787154223 Q ss_pred HHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCC----CCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 9999972001010131055138999998299699986044666----776667788999998502540342156664323 Q T0591 117 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSA----DETRAGLDLTGLEEAFKAGARVFLFSNPNNPAG 192 (406) Q Consensus 117 ~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~----~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG 192 (406) +++++++|||.|++++|+|+.|...+...|++++.++++.... ++..|.++.+++.+...++++++++|||||||| T Consensus 117 ~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~NPtG 196 (429) T 1yiz_A 117 TIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLG 196 (429) T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTC T ss_pred CHHHHCCCCCCEEECCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC T ss_conf 01320023320110123342036789863977999872035566630566666658876555403554221165022454 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHH Q ss_conf 34437899999999863787578417502355688876522332102678689985040010463112114332589999 Q T0591 193 VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIA 272 (406) Q Consensus 193 ~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~ 272 (406) .+++.+++++|+++|++++++||+||+|.++.|++.+..++.... ...+++|+++|+||.+++||+|+||+++++++++ T Consensus 197 ~~~s~e~~~~l~~~~~~~~i~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~i~ 275 (429) T 1yiz_A 197 KVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLP-GMWERTITIGSAGKTFSLTGWKIGWAYGPEALLK 275 (429) T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGST-TTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 331388888887640201335124544444330134553001576-5554021121577531688775453223202444 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCC Q ss_conf 99987520367612457999999985-------65258999999999999999999972799455358873078776688 Q T0591 273 RMEKLQAIVSLRAAGYSQAVLRGWFD-------EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK 345 (406) Q Consensus 273 ~l~~~~~~~~~~~~~~~q~a~~~~l~-------~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~ 345 (406) .+.+.+.....+++++.|.+++.++. ..+.++++.+..|+++|+.+.+.|++. |+.+..|+||||+|+++++ T Consensus 276 ~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~p~gg~fl~~~~~~ 354 (429) T 1yiz_A 276 NLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSS 354 (429) T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCS T ss_pred HHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCEEEEEEECCC T ss_conf 443102223244554566541003322333333301356778899999888888889973-9813479930399886244 Q ss_pred C-----------CCCHHHHHHHHHHHCCEEEEECCCCCCC-----CCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 7-----------8898999999998689189616102679-----998589985099799999999999999 Q T0591 346 L-----------AVAPAEFVKILRLQAGVVVTPGTEFSPH-----TADSVRLNFSQDHEAAVAAARRIVTLV 401 (406) Q Consensus 346 ~-----------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-----~~~~iRis~~~~~e~l~~al~rl~~~~ 401 (406) . ..++.+|+.+|++++||.++||+.|+.. +++|+|+||+.++|++++|++||++++ T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PGs~F~~~~~~~~g~~~iRi~~~~~~e~l~~a~~rl~~~~ 426 (429) T 1yiz_A 355 LDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWK 426 (429) T ss_dssp SCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHS T ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 664111012034467899999999978999977356488877667899899996489999999999999987 No 11 >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalanine catabolism; HET: PLP; 2.30A {Homo sapiens} Probab=100.00 E-value=0 Score=495.24 Aligned_cols=356 Identities=22% Similarity=0.301 Sum_probs=312.1 Q ss_pred CCEEECCCCCCC---CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 833415678678---87888999999999980878888788889889999999999864886788670788248727899 Q T0591 39 RPVDFSHGDVDA---HEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 39 ~~i~ls~G~pd~---~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) ..|+|++|+|+. ..|+|.+.+++.+++.++..++|++..|.++||++||+|++++ +.++++ ++|++|+|++++|. T Consensus 55 ~iI~l~~G~P~~~~d~~~~~~v~~a~~~a~~~~~~~~Y~~~~G~~~lR~aia~~~~~~-~~~~~~-~~I~it~G~~~al~ 132 (427) T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEA-KDVILTSGCSQAID 132 (427) T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCG-GGEEEESSHHHHHH T ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCH-HHEEEECCHHHHHH T ss_conf 8578948888987899999999999999973898788899867099999999997343-899884-34999489999999 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC Q ss_conf 99999972001010131055138999998299699986044666776667788999998502540342156664323344 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVY 195 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~ 195 (406) ++++++++|||+|++++|+|+.|...++.+|++++.++++ ++++|.+|++++++.+++++|+++++|||||||.++ T Consensus 133 ~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~G~~~~~~~~~----~~~~~~~d~~~l~~~~~~~~~~iil~~p~NPtG~~~ 208 (427) T 3dyd_A 133 LCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLL----PEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVF 208 (427) T ss_dssp HHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEE----GGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCC T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECC----CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC T ss_conf 9999967896989991897389999999839857885156----666767699999974225825886268889877433 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHH------- Q ss_conf 3789999999986378757841750235568887652233210267868998504001046311211433258------- Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR------- 268 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~------- 268 (406) +.+++++|+++|++||++||+||+|++|.|++..++++.... ..+++|+++||||.|++||||+||+++++ T Consensus 209 s~~~l~~i~~la~~~~~~iI~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~~s~SK~~~~~G~R~G~~~~~~~~~~~~~ 286 (427) T 3dyd_A 209 SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS--TDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGN 286 (427) T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC--SSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHH T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHEEEECCCCCCCCHHHHC--CCCCCCEEECCCCCCCCCCCCEEEEEECCHHHHHHH T ss_conf 078899999987521565001322111112898767078743--346741782365565683508599997547888899 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCC-- Q ss_conf 999999987520367612457999999985-65258999999999999999999972799455358873078776688-- Q T0591 269 AIIARMEKLQAIVSLRAAGYSQAVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK-- 345 (406) Q Consensus 269 ~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~-- 345 (406) .+...+.++... ..+++.+.|.++..++. ...+++++.++.++++|+.+.+.|++++|+++..|+||||+|++++. T Consensus 287 ~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~P~g~~~~~~~i~~~~ 365 (427) T 3dyd_A 287 EIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEH 365 (427) T ss_dssp HHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGG T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCC T ss_conf 999999998642-2687469999999998658199999999999999999999997389967706897359988677444 Q ss_pred --CCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf --788989999999986891896161026799985899850997999999999999999856 Q T0591 346 --LAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 346 --~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) ...++.+|+++|++++||.++||+.|+ +++|+|+||+.++|++++|++||++++++|- T Consensus 366 ~~~~~~~~~~~~~ll~~~gV~v~PG~~F~--~~~~iRis~~~~~e~l~eal~rl~~~~~~~~ 425 (427) T 3dyd_A 366 FPEFENDVEFTERLVAEQSVHCLPATCFE--YPNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427) T ss_dssp CTTCSSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEESCSCHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHHHCCEEEEECCCCC--CCCEEEEEECCCHHHHHHHHHHHHHHHHHCC T ss_conf 78888999999999996999998177579--9897999964899999999999999999706 No 12 >3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} Probab=100.00 E-value=0 Score=494.23 Aligned_cols=376 Identities=16% Similarity=0.256 Sum_probs=321.7 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 44688871466661578998878899999630378983341567867887888999999999980878888788889889 Q T0591 3 IEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGI 82 (406) Q Consensus 3 i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~L 82 (406) +++.+.|.++...++. .....+.|.|++|++|+++| +.+.+++.+++.+ +.++|+ .|.++| T Consensus 4 f~~~~~r~~~~s~kw~---------------~~~~~dvi~l~v~d~Df~~p-~~i~~al~~~~~~-~~~gY~--~g~~~L 64 (383) T 3kax_A 4 FHKTVNRRGTHSIKWD---------------TYKNEELIHAWIADMDFEVP-QPIQTALKKRIEH-PIFGYT--LPPENI 64 (383) T ss_dssp ---------------C---------------CCSSSCCEECCCSSCSSCCC-HHHHHHHHHHHHS-CCCCCC--CCCTTH T ss_pred CCCCCCCCCCCCHHHH---------------HCCCCCCEECCCCCCCCCCC-HHHHHHHHHHHHC-CCCCCC--CCCHHH T ss_conf 7986666999856551---------------05899806588879899988-9999999999968-896898--996899 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCC Q ss_conf 99999999986488678867078824872789999999972001010131055138999998299699986044666776 Q T0591 83 RDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADET 162 (406) Q Consensus 83 r~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~ 162 (406) |++||+|+++++|+++++ ++|++|+|++++|.+++.++++|||.|++++|+|+.|...+...|+..+.++++. +++ T Consensus 65 R~aia~~~~~~~g~~~~~-~~I~it~G~~~al~~~~~~l~~pGd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~---~~~ 140 (383) T 3kax_A 65 GDIICNWTKKQYNWDIQK-EWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQK---QND 140 (383) T ss_dssp HHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEE---ETT T ss_pred HHHHHHHHHHHCCCCCCC-CEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEECCC---CCC T ss_conf 999999999970999997-7899936863267899987623354266226677608899988630331000011---110 Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC Q ss_conf 66778899999850254034215666432334437899999999863787578417502355688876522332102678 Q T0591 163 RAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAE 242 (406) Q Consensus 163 ~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 242 (406) +|.+|++.+++.++++++++++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++...+++........+ T Consensus 141 ~~~~~~~~l~~~~~~~~~~i~~~~P~NPTG~v~s~e~~~~l~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~ 220 (383) T 3kax_A 141 TYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAA 220 (383) T ss_dssp EEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHT T ss_pred CCCCCHHHHHHHHCCCCCEEEECCCCCCCCCEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 23235999753431323136632565665411107764444312456245599977644434589877873111234542 Q ss_pred CEEEEEECCHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 68998504001046311211433258-9999999875203676124579-999999856525899999999999999999 Q T0591 243 NVVTIMGPSKTESLSGYRLGVAFGSR-AIIARMEKLQAIVSLRAAGYSQ-AVLRGWFDEAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 243 ~~i~~~S~SK~~~~~GlRiG~~~~~~-~~i~~l~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~ 320 (406) ++|+++||||.|++||+|+||++++. .+.+.+..++.....+.+...| .++..++.+...++.+.+..++++++.+.+ T Consensus 221 ~~i~~~S~SK~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (383) T 3kax_A 221 RTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACE 300 (383) T ss_dssp TEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 17998505455666632322100111344455677764124343322025778887640322344556666688999999 Q ss_pred HHHH-CCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH Q ss_conf 9972-799455358873078776688788989999999986891896161026799985899850997999999999999 Q T0591 321 VLRG-CEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVT 399 (406) Q Consensus 321 ~L~~-~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~ 399 (406) .+.. .+++.+..|+||||+|+++++.+.++.++++.|++++||++.||+.||..+++|+||||+.+++++++|++||++ T Consensus 301 ~~~~~~~~~~~~~p~gg~f~w~~~~~~~~~~~~~~~~L~e~~~V~v~PG~~Fg~~~~~~iRis~a~~~e~l~eal~RL~~ 380 (383) T 3kax_A 301 YIKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRH 380 (383) T ss_dssp HHHHHCTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHHHH T ss_pred HHHCCCCCCEEECCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 86344787167068805799998888899999999999974999997665428899996999973899999999999999 Q ss_pred HH Q ss_conf 99 Q T0591 400 LV 401 (406) Q Consensus 400 ~~ 401 (406) ++ T Consensus 381 ~f 382 (383) T 3kax_A 381 TF 382 (383) T ss_dssp HH T ss_pred HH T ss_conf 85 No 13 >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S lyase; YP_813084.1, structural genomics, joint center for structural genomics; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Probab=100.00 E-value=0 Score=492.69 Aligned_cols=361 Identities=18% Similarity=0.236 Sum_probs=310.8 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 89833415678678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) .++.|.|++|++|++. +|.+.+++.+++..+ .++|++ |.++||++||+|+++++|+++++ ++|++|+|+++++.+ T Consensus 26 ~~~~i~~~v~d~dfp~-p~~v~~al~~~~~~~-~~gY~~--~~~elReaia~~~~~~~g~~~~~-e~I~it~G~~~al~~ 100 (391) T 3dzz_A 26 KEKELPMWIAEMDFKI-APEIMASMEEKLKVA-AFGYES--VPAEYYKAVADWEEIEHRARPKE-DWCVFASGVVPAISA 100 (391) T ss_dssp CTTCEECCSSCCSSCC-CHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHSCCCCG-GGEEEESCHHHHHHH T ss_pred CCCEECCCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCC--CCHHHHHHHHHHHHHHHCCCCCC-CEEEECCCHHHHHHH T ss_conf 9884305777889999-999999999998579-979789--59899999999999986899994-769988889999999 Q ss_pred HHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHH-HCCCCEEEECCCCCCCCCCCC Q ss_conf 9999972001010131055138999998299699986044666776667788999998-502540342156664323344 Q T0591 117 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA-FKAGARVFLFSNPNNPAGVVY 195 (406) Q Consensus 117 ~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~-~~~~~k~i~l~~P~NPTG~~~ 195 (406) +++++++|||.|++++|+|+.|...+..+|.++++++++.+ .++|.+|.+++++. .++++|++++||||||||.++ T Consensus 101 ~~~~l~~pgd~vlv~~P~y~~~~~~~~~~g~~~v~~~~~~e---~~~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~ 177 (391) T 3dzz_A 101 MVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYE---NSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAW 177 (391) T ss_dssp HHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEE---TTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCC T ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCC---CCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCC T ss_conf 99995799898998278717789999861773254321477---888889999999971789966999789969877654 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHH- Q ss_conf 3789999999986378757841750235568887652233210267868998504001046311211433258999999- Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARM- 274 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l- 274 (406) |.+++++|+++|++|+++||+||+|.++.|++.++.+.........+++|+++|+||.|++||+|+||++++...+... T Consensus 178 s~e~~~~l~~~~~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~ 257 (391) T 3dzz_A 178 SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARA 257 (391) T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHH T ss_pred CHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCHHHHCCCCEEEEEECCCHHHHHHH T ss_conf 18999999999886607999943643210258766706654312432045404673031101131689980869999998 Q ss_pred HHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCEEEEEECCCCCCCHHH Q ss_conf 987520367-612457999999985652589999999999999999999-727994553588730787766887889899 Q T0591 275 EKLQAIVSL-RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVL-RGCEGVFARTPQAGSYLFPRLPKLAVAPAE 352 (406) Q Consensus 275 ~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~ 352 (406) ......... +++...|.++..++++...+.++.++.++++++.+.+.+ ...+++.+..|+||||+|++++..+.++.+ T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~ 337 (391) T 3dzz_A 258 EESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAED 337 (391) T ss_dssp HHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCHHH T ss_conf 64222036875578999999999750256789999999999999999753337884682689724999978888989999 Q ss_pred HHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99999986891896161026799985899850997999999999999999856 Q T0591 353 FVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 353 ~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) |+++|++++||+++||+.|+..+++|+||||+.++|++++|++||++++++++ T Consensus 338 ~~~~Ll~~~gV~v~pG~~F~~~~~~~iRis~~~~~e~l~eal~rl~~~l~~l~ 390 (391) T 3dzz_A 338 FCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNLN 390 (391) T ss_dssp HHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC T ss_conf 99999984999996642218899997999970899999999999999999736 No 14 >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, alternative splicing, aminotransferase, lyase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Probab=100.00 E-value=0 Score=491.61 Aligned_cols=362 Identities=21% Similarity=0.307 Sum_probs=323.2 Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 78983341567867887888999999999980878888788889889999999999864886788670788248727899 Q T0591 36 IEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 36 ~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) .++..|+|++|+||+.+ ++.+.+++.+++.....++|++..|.++||++||+|+++++|.+++++++|++|+|++++|. T Consensus 21 ~~~~~I~L~~G~P~~~~-~~~v~~a~~~~a~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~I~it~G~~~al~ 99 (410) T 3e2y_A 21 ADPSVVNLGQGFPDISP-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410) T ss_dssp TSTTSEECSSCCCCSCC-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH T ss_pred CCCCCEECCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHH T ss_conf 89995887288899977-99999999999717687888999789999999999999996899998766999178699999 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCC-----CCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 999999720010101310551389999982996999860446-----667766677889999985025403421566643 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYV-----SADETRAGLDLTGLEEAFKAGARVFLFSNPNNP 190 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~-----~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NP 190 (406) ++++++++|||.|++++|+|+.|...+..+|.+++.||++.. ....+.+..|++++++.+++++++++++||||| T Consensus 100 ~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~v~vp~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~l~~p~NP 179 (410) T 3e2y_A 100 NSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNP 179 (410) T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTT T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCC T ss_conf 99999838897487622555117899997276479814543443333455534468999999754568866874899598 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 23344378999999998637875784175023556888765223321026786899850400104631121143325899 Q T0591 191 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) ||.+++.+++++|+++|++|+++||+||+|.++.|++...+++.... ...++++++.|+||.+++||+|+||+++++++ T Consensus 180 tG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~~~~G~RiG~~v~~~~~ 258 (410) T 3e2y_A 180 LGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLP-GMWERTITIGSAGKTFSVTGWKLGWSIGPAHL 258 (410) T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGST-TCGGGEEEEEEHHHHSSCGGGCCEEEECCHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHCC-CCCCCEECCCCCCCCCCCCCEEEECCHHHHHH T ss_conf 77564099999999999986981202124655533885435375544-43452010345765345662553520315899 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEC Q ss_conf 9999987520367612457999999985-------652589999999999999999999727994553588730787766 Q T0591 271 IARMEKLQAIVSLRAAGYSQAVLRGWFD-------EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRL 343 (406) Q Consensus 271 i~~l~~~~~~~~~~~~~~~q~a~~~~l~-------~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~ 343 (406) ++.+.+++.....+++++.|.+++.++. +.+.++.+.+++|+++++.+.+.|+++ |+++..|+||||+|+++ T Consensus 259 i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~L~~~-g~~~~~P~gg~fiw~~l 337 (410) T 3e2y_A 259 IKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADV 337 (410) T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEEC T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEEEEEEC T ss_conf 99999998750256898999999999998788875313678999999999988999999867-96763688011997988 Q ss_pred CCCC----------CCHHHHHHHHHHHCCEEEEECCCCCCCC-----CCEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 8878----------8989999999986891896161026799-----9858998509979999999999999 Q T0591 344 PKLA----------VAPAEFVKILRLQAGVVVTPGTEFSPHT-----ADSVRLNFSQDHEAAVAAARRIVTL 400 (406) Q Consensus 344 ~~~~----------~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~-----~~~iRis~~~~~e~l~~al~rl~~~ 400 (406) +..+ .++.+|+++|++++||+|+||+.|+... ++|+||||+.++|++++|++||+.+ T Consensus 338 ~~~~~~~~~~~~~~~~~~~f~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRls~a~~~e~l~~a~~~l~a~ 409 (410) T 3e2y_A 338 SSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409 (410) T ss_dssp GGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHTC T ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH T ss_conf 122676011024445699999999996999998064546788877879979999659999999999999851 No 15 >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; NP_940074.1, structural genomics, joint center for structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Probab=100.00 E-value=0 Score=492.02 Aligned_cols=353 Identities=20% Similarity=0.278 Sum_probs=313.1 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 89833415678678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) ..+.|+|++|+||+++ +|.+.+++.+++.+ +.++|++..|. ||++||+|+++++|+++++ ++|++|+|++++|.+ T Consensus 22 ~~~ii~l~igd~df~~-p~~v~~al~~~~~~-~~~gY~~~~g~--Lr~aia~~~~~~~g~~~~~-~~I~it~G~~~al~~ 96 (377) T 3fdb_A 22 GQGVLPLWVAESDFST-CPAVLQAITDAVQR-EAFGYQPDGSL--LSQATAEFYADRYGYQARP-EWIFPIPDVVRGLYI 96 (377) T ss_dssp CTTSEECCSSCCCSCC-CHHHHHHHHHHHHT-TCCSSCCSSCC--HHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHH T ss_pred CCCEEEECCCCCCCCC-CHHHHHHHHHHHHC-CCCCCCCCCCH--HHHHHHHHHHHHCCCCCCC-CEEEECCCHHHHHHH T ss_conf 9982751137989987-89999999999867-99789998409--9999999999872999996-557752540344424 Q ss_pred HHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 99999720010101310551389999982996999860446667766677889999985025403421566643233443 Q T0591 117 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYS 196 (406) Q Consensus 117 ~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s 196 (406) +++++++|||+|++++|+|+.|...++..|.+.++++.+ +++|++++++++++++|+++++|||||||.++| T Consensus 97 ~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~--------~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~v~s 168 (377) T 3fdb_A 97 AIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDAT--------GGINLHDVEKGFQAGARSILLCNPYNPLGMVFA 168 (377) T ss_dssp HHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECT--------TSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCC T ss_pred HHHHCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEH T ss_conf 443024543323210100001233332101232111222--------455531000122334331012235574430312 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHHHHH Q ss_conf 7899999999863787578417502355688876522332102678689985040010463112114332-589999999 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARME 275 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~~l~ 275 (406) .+++++|+++|++++++||+||+|.++.|++..+++.... ....+++|+++||||.|+++|||+||++. ++.++..+. T Consensus 169 ~~~~~~l~~~~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~~~~G~R~G~~~~~~~~~~~~~~ 247 (377) T 3fdb_A 169 PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS-DTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQ 247 (377) T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSC-HHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHCC T ss_conf 5443233202233455420403444323443322111222-222333321024554444554332223453011111011 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCEEEEEECCCCCCCHHHHH Q ss_conf 87520367612457999999985652589999999999999999999-72799455358873078776688788989999 Q T0591 276 KLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVL-RGCEGVFARTPQAGSYLFPRLPKLAVAPAEFV 354 (406) Q Consensus 276 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~ 354 (406) ++......+++.+.|.++..++...+.+..+.+..++++|+.+.+.+ +...|+++..|+||||+|+++++.. ++.+++ T Consensus 248 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~-~~~~~~ 326 (377) T 3fdb_A 248 QLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT-IEGSPS 326 (377) T ss_dssp HSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC-CCSCHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEECCCCCEEEEEEECCCCC-CCHHHH T ss_conf 3221112321102267899986402122233322221023332012322344425417981589999788888-868999 Q ss_pred HHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 99998689189616102679998589985099799999999999999985 Q T0591 355 KILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 355 ~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) +.|++++||.++||+.||..+++|+|+||+.++|++++|++||++++++| T Consensus 327 ~~ll~~~gV~v~pG~~Fg~~~~~~iRls~~~~~e~l~~al~rL~~~l~~~ 376 (377) T 3fdb_A 327 EFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377) T ss_dssp HHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC T ss_conf 99998599999766443889988699997189999999999999999865 No 16 >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Probab=100.00 E-value=0 Score=482.74 Aligned_cols=385 Identities=21% Similarity=0.349 Sum_probs=337.0 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 97446888714666615789988788999996303789833415678678878889999999999808788887888898 Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDL 80 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~ 80 (406) |..++|+++.. ..+++ ++..+.++ .++.|||++|+|++++ ++.+.+++.+++..+ .++|++..|.+ T Consensus 1 ~~~~~~~~~~~-----~~~i~----~~~~~~~~---~~~vI~l~~g~p~~~~-p~~v~~a~~~~~~~~-~~~Y~~~~G~~ 66 (389) T 1gd9_A 1 MALSDRLELVS-----ASEIR----KLFDIAAG---MKDVISLGIGEPDFDT-PQHIKEYAKEALDKG-LTHYGPNIGLL 66 (389) T ss_dssp -CHHHHHHHSC-----CCHHH----HHHHHHHT---CSSCEECCCCSCSSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCH T ss_pred CCHHHHHHHCC-----CCHHH----HHHHHHHC---CCCCEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCCH T ss_conf 96404421189-----65899----99999867---9993899998899987-899999999998468-87999986799 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCC Q ss_conf 89999999999864886788670788248727899999999720010101310551389999982996999860446667 Q T0591 81 GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSAD 160 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~ 160 (406) +||++||+|++.+++..+.++++|++|+|+++++.+++.+++++||.|++++|+|+.|...++..|+.++.++++ + T Consensus 67 ~lr~aia~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~gd~vl~~~P~y~~~~~~~~~~g~~~v~~~~~----~ 142 (389) T 1gd9_A 67 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTY----E 142 (389) T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECC----G T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEECC----C T ss_conf 999999999998729988983269984858999999999841499989805886047899999849989996345----0 Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf 76667788999998502540342156664323344378999999998637875784175023556888765223321026 Q T0591 161 ETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 240 (406) Q Consensus 161 ~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 240 (406) ++++.+|++.+++..++++|++++||||||||.++|.+++++|+++|++|+++||.||+|.++.+++.....+... ... T Consensus 143 ~~~~~~~~~~l~~~~~~~~~~i~l~~p~NPtG~~~s~~~~~~i~~~~~~~~i~vidD~~~~~~~~~~~~~~~~~~~-~~~ 221 (389) T 1gd9_A 143 EDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL-DGM 221 (389) T ss_dssp GGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS-TTC T ss_pred CCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCCCCCCCHHHH-CCC T ss_conf 0154457999962468784899978999987826789999999988877698995045443220256677656764-488 Q ss_pred CCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH Q ss_conf 786899850400104631121143325899999998752036761245799999998565--258999999999999999 Q T0591 241 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDEL 318 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l 318 (406) .+++|+++||||.|++||+|+||++++++++..+...+.....+.+...|.+++..+.+. .+++++.+..++++++.+ T Consensus 222 ~~~~i~~~S~SK~~~~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389) T 1gd9_A 222 FERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLV 301 (389) T ss_dssp GGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 88879997775024442422105566666666666655302321015899999999867742489999999999999999 Q ss_pred HHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHH Q ss_conf 99997279945535887307877668878898999999998689189616102679998589985099799999999999 Q T0591 319 LHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIV 398 (406) Q Consensus 319 ~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~ 398 (406) .+.|... ++.+..|+||+|+|+++++.+.++.+++++|++++||.++||+.||..+++|+|+||+.++|++++|++||+ T Consensus 302 ~~~l~~~-~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~e~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~~a~~rl~ 380 (389) T 1gd9_A 302 WKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRME 380 (389) T ss_dssp HHHHHHT-TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHCC-CCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 9997411-356538996069999888889999999999998599999833330889999799997288999999999999 Q ss_pred HHHHHHC Q ss_conf 9999856 Q T0591 399 TLVERYR 405 (406) Q Consensus 399 ~~~~~~r 405 (406) ++++++| T Consensus 381 ~~l~e~k 387 (389) T 1gd9_A 381 RVLKERK 387 (389) T ss_dssp HHHHHTT T ss_pred HHHHHCC T ss_conf 9999778 No 17 >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Probab=100.00 E-value=0 Score=490.39 Aligned_cols=383 Identities=17% Similarity=0.213 Sum_probs=317.2 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 6888714666615789988788999996303789-833415678678878889999999999808788887888898899 Q T0591 5 AKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEG-RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIR 83 (406) Q Consensus 5 ~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr 83 (406) ++.+|.++...++ +.+....+..+ +.|+|++|+||+++| +.+++++.+++.++ .++|+ .|.++|| T Consensus 7 ~~~~r~~~~s~kw----------~~~~~~~~~~g~~vi~l~ig~pdf~~p-~~v~~al~~~~~~~-~~~Y~--~g~~~lR 72 (399) T 1c7n_A 7 TKISRKNLGSLKW----------DLMYSQNPEVGNEVVPLSVADMEFKNP-PELIEGLKKYLDET-VLGYT--GPTEEYK 72 (399) T ss_dssp CCCCCTTTTBHHH----------HHHHHHCTTCCTTCCCCCSSSCSSCCC-HHHHHHHHHHHHHC-CCSSB--CCCHHHH T ss_pred CCCCCCCCCCHHH----------HHHHHHHHHCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHCC-CCCCC--CCCHHHH T ss_conf 8777899977769----------999987675499868830789899988-99999999998589-86899--9879999 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCC Q ss_conf 99999999864886788670788248727899999999720010101310551389999982996999860446667766 Q T0591 84 DLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETR 163 (406) Q Consensus 84 ~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~ 163 (406) ++||+|+++++|+++++ ++|++|+|+++++.++++++++|||.|++++|+|+.|...+..+|.+.+.++... .+.. T Consensus 73 ~aia~~~~~~~g~~~~~-~~I~it~G~~~al~~~~~a~~~~gd~vlv~~p~~~~~~~~~~~~~~~~v~~~~~~---~~~~ 148 (399) T 1c7n_A 73 KTVKKWMKDRHQWDIQT-DWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLE---KDGY 148 (399) T ss_dssp HHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEE---ETTE T ss_pred HHHHHHHHHHHCCCCCC-CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCC---CCCC T ss_conf 99999999984899992-5599868889999999999827897799970563358999997178136520455---4444 Q ss_pred CCCCHHHHHHHH-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC Q ss_conf 677889999985-0254034215666432334437899999999863787578417502355688876522332102678 Q T0591 164 AGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAE 242 (406) Q Consensus 164 ~~~d~~~l~~~~-~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 242 (406) +.+|.+.++... .+++|++++||||||||.++|.+++++|+++|++||++||+||+|.+|.|++...++.........+ T Consensus 149 ~~~~~~~~~~~~~~~~~k~i~l~~P~NPTG~v~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~ 228 (399) T 1c7n_A 149 YTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLAD 228 (399) T ss_dssp EECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHT T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCCCHHHCCCCCCC T ss_conf 57789999997128896599979997997800879999987504455236886134532033037887732220455541 Q ss_pred CEEEEEECCHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 689985040010463112114332589-999999875203676124579-999999856525899999999999999999 Q T0591 243 NVVTIMGPSKTESLSGYRLGVAFGSRA-IIARMEKLQAIVSLRAAGYSQ-AVLRGWFDEAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 243 ~~i~~~S~SK~~~~~GlRiG~~~~~~~-~i~~l~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~ 320 (406) +++++.|+||.|++||||+||++++++ +.+.+.+.+.....++....+ .++.......+.+..+.++.++++++.+.+ T Consensus 229 ~~i~~~S~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (399) T 1c7n_A 229 KTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKD 308 (399) T ss_dssp TEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 36854676433006775634641680999999999840102332102689999997643022100024678899999999 Q ss_pred HHHH-CCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH Q ss_conf 9972-799455358873078776688788989999999986891896161026799985899850997999999999999 Q T0591 321 VLRG-CEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVT 399 (406) Q Consensus 321 ~L~~-~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~ 399 (406) .|.. ..++.+..|+||||+|+++++...++.+|+.+|++++||++.||+.||..+++|+|+||+.++|++++|++||++ T Consensus 309 ~l~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~eal~ri~~ 388 (399) T 1c7n_A 309 FFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNK 388 (399) T ss_dssp HHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH T ss_pred HHHHCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHH T ss_conf 99850997034078852589897778899999999999986999996523428899987999982899999999999999 Q ss_pred HHHHHC Q ss_conf 999856 Q T0591 400 LVERYR 405 (406) Q Consensus 400 ~~~~~r 405 (406) +++++| T Consensus 389 ~l~~lk 394 (399) T 1c7n_A 389 ALKDLK 394 (399) T ss_dssp HHHHHC T ss_pred HHHHHH T ss_conf 999988 No 18 >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=479.02 Aligned_cols=353 Identities=20% Similarity=0.315 Sum_probs=317.4 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 83341567867887888999999999980878888788889889999999999864886788670788248727899999 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 118 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~ 118 (406) ..|||++|+||+++ ++.+.+++.+++.++ .++|++..|.++||++||+|+++++|++++++++|++|+|+++++.+++ T Consensus 31 ~~i~L~~G~Pd~~~-p~~l~~al~~~~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~ 108 (386) T 1u08_A 31 QAINLSQGFPDFDG-PRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 108 (386) T ss_dssp TCEECCCSSCSSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH T ss_pred CCEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH T ss_conf 97886488899977-899999999998549-9889898788999999999999972999998776998266167788998 Q ss_pred HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH Q ss_conf 99972001010131055138999998299699986044666776667788999998502540342156664323344378 Q T0591 119 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 198 (406) Q Consensus 119 ~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~ 198 (406) +++++|||.|+++.|+|+.+.......+...+.++++ ++++.+|++++++..++++|++++||||||||++++.+ T Consensus 109 ~~l~~~gd~vl~~~p~y~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~ 183 (386) T 1u08_A 109 TALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-----PPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQA 183 (386) T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-----TTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC-----CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC T ss_conf 8762468559860354301567887641223333321-----32246899997322125731899878987885455542 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999863787578417502355688876522332102678689985040010463112114332589999999875 Q T0591 199 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ 278 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~ 278 (406) ++++|+++|++++++++.|+.|..+.+++......... ....+++|++.|+||.+++||+|+||+++|+++++++...+ T Consensus 184 ~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~~~~GlRiG~~v~p~~~~~~~~~~~ 262 (386) T 1u08_A 184 DFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH-PQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVH 262 (386) T ss_dssp HHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGS-HHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCCCCCC-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 12333221034432024302202102433455432234-54567438974145654577665322023304678887520 Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC-CCCHHHHHHHH Q ss_conf 20367612457999999985652589999999999999999999727994553588730787766887-88989999999 Q T0591 279 AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-AVAPAEFVKIL 357 (406) Q Consensus 279 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~-~~~~~~~~~~L 357 (406) ...+++++.+.|.++..++.++++++.+.++.++++|+.+.+.+.+ .|+++..|+||||+|++++.. ..++.+|+++| T Consensus 263 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~p~Gg~~lwv~~~~~~~~~~~~~~~~l 341 (386) T 1u08_A 263 QYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-SRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWL 341 (386) T ss_dssp HHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-SSCEECCCCBSSEEEEECTTTCCSCHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCCCEEEEEEECCCCCCCCHHHHHHHH T ss_conf 2232345643332233222230677778999876533667888876-386683689457998956888999999999999 Q ss_pred HHHCCEEEEECCCCCCC--CCCEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 98689189616102679--99858998509979999999999999 Q T0591 358 RLQAGVVVTPGTEFSPH--TADSVRLNFSQDHEAAVAAARRIVTL 400 (406) Q Consensus 358 l~~~gV~v~pG~~Fg~~--~~~~iRis~~~~~e~l~~al~rl~~~ 400 (406) ++++||.++||+.||.. +++|+|+||+.++|+++||++||+++ T Consensus 342 l~e~gV~v~PG~~Fg~~~~~~~~iRls~a~~~e~l~eai~Rl~~l 386 (386) T 1u08_A 342 TQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386 (386) T ss_dssp HHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC T ss_pred HHHCCEEEECCHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCC T ss_conf 997999998215637899989889999819999999999997089 No 19 >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=478.98 Aligned_cols=375 Identities=22% Similarity=0.318 Sum_probs=319.8 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 44688871466661578998878899999630378983341567867887888999999999980878888788889889 Q T0591 3 IEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGI 82 (406) Q Consensus 3 i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~L 82 (406) |+.|.+++.. .+..++.+.++.. ..+ ..+.|+|++|+||+++ ++.+.+++.+++.++ .++|++..|.++| T Consensus 14 ~s~r~~~~~~--~~~~~~~~~a~~~--~~~----G~dvI~l~~g~p~~~~-p~~v~~a~~~~~~~~-~~~Y~~~~G~~~l 83 (389) T 1o4s_A 14 VSRRISEIPI--SKTMELDAKAKAL--IKK----GEDVINLTAGEPDFPT-PEPVVEEAVRFLQKG-EVKYTDPRGIYEL 83 (389) T ss_dssp CCHHHHHSCC--CSSHHHHHHHHHH--HHT----TCCCEECCCSSCSSCC-CHHHHHHHHHHHTTC-CCCCCCTTCCHHH T ss_pred HHHHHHHCCC--CHHHHHHHHHHHH--HHC----CCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCCHHH T ss_conf 9999876896--7899999999999--977----9985899999899998-899999999998558-8688998477999 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCC Q ss_conf 99999999986488678867078824872789999999972001010131055138999998299699986044666776 Q T0591 83 RDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADET 162 (406) Q Consensus 83 r~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~ 162 (406) |++||+|+.+++|+++++ ++|++|+|+++++.++++++++|||.|++++|+|+.|...+...|...+.++++ +++ T Consensus 84 r~aia~~~~~~~~~~~~~-~~i~it~G~~~ai~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~~~~~~~~~~----~~~ 158 (389) T 1o4s_A 84 REGIAKRIGERYKKDISP-DQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETF----MSK 158 (389) T ss_dssp HHHHHHHHHHHHTCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC----GGG T ss_pred HHHHHHHHHHHHCCCCCH-HHEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCC----CCC T ss_conf 999999999984899984-438993677999999999981998989986897366899999817850024544----222 Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCC Q ss_conf 66778899999850254034215666432334437899999999863787578417502355688876522332102678 Q T0591 163 RAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAE 242 (406) Q Consensus 163 ~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 242 (406) ++.++.+.+++..+++++++++||||||||.++|.+++++|+++|++++++||+||+|+++.|++...+.+... ...+ T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~--~~~~ 236 (389) T 1o4s_A 159 NFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVS--EGFD 236 (389) T ss_dssp TTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHC--SSST T ss_pred CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHC--CCCC T ss_conf 35616887765303564278835998988887899999999998998292999730033101367777754524--7678 Q ss_pred CEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68998504001046311211433258999999987520367612457999999985652589999999999999999999 Q T0591 243 NVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVL 322 (406) Q Consensus 243 ~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L 322 (406) |+|+++||||+|++||+|+||+++++++++.+...+.....+.+...|.++....... ....++.++++++.+.+.| T Consensus 237 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L 313 (389) T 1o4s_A 237 RIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD---NSYMVQTFKERKNFVVERL 313 (389) T ss_dssp TEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH T ss_conf 6899941420106886766532231167999999860355113389999999864200---8899999999999999999 Q ss_pred HHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 72799455358873078776688788989999999986891896161026799985899850997999999999999999 Q T0591 323 RGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 323 ~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~ 402 (406) .+. |+++..|+||||+|++++. ++.+++.+|++++||.++||+.|+. ++|+|++|+.++|++++|++||+++++ T Consensus 314 ~~~-g~~~~~p~gg~fl~~~~~~---~~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~~~~e~l~~al~rL~~~l~ 387 (389) T 1o4s_A 314 KKM-GVKFVEPEGAFYLFFKVRG---DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFLN 387 (389) T ss_dssp HHT-TCCCCCCSBSSEEEEECSS---CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHHT T ss_pred HHC-CCEEECCCCCEEEEEECCC---CHHHHHHHHHHHCCEEEEECCCCCC--CCEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 977-9768458940799997999---9799999999969999996732589--997999964989999999999999985 Q ss_pred H Q ss_conf 8 Q T0591 403 R 403 (406) Q Consensus 403 ~ 403 (406) . T Consensus 388 ~ 388 (389) T 1o4s_A 388 S 388 (389) T ss_dssp C T ss_pred C T ss_conf 6 No 20 >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO2589, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Probab=100.00 E-value=0 Score=477.44 Aligned_cols=372 Identities=21% Similarity=0.304 Sum_probs=318.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 66661578998878899999630378983341567867887888999999999980878888788889889999999999 Q T0591 12 TDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLA 91 (406) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~ 91 (406) .......++.+.+++..+ ...+.|||++|+||+++ ++.+.+++.+++..+ .++|++..|.++||++||+|++ T Consensus 11 ~~p~~~~~v~~~~~~~~~------~g~~vi~l~~G~p~~~~-p~~i~~a~~~al~~~-~~~Y~~~~G~~~LR~aia~~~~ 82 (391) T 3h14_A 11 VDPFIVMDVMEAARRAEE------AGRRIIHMEVGQPGTGA-PRGAVEALAKSLETD-ALGYTVALGLPALRQRIARLYG 82 (391) T ss_dssp CCCCTTHHHHHHHHHHHH------TTCCCEECCCSSCSSCS-CHHHHHHHHHHHC-----------CCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH------CCCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHH T ss_conf 998389999999999997------79975889998899997-899999999997469-8799898589999999997554 Q ss_pred HHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH Q ss_conf 86488678867078824872789999999972001010131055138999998299699986044666776667788999 Q T0591 92 AFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGL 171 (406) Q Consensus 92 ~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l 171 (406) +.+|+++++ ++|++|+|+++++.+++.++++|||+|++++|+|+.|...++.+|++++.++++.. +.+..+... T Consensus 83 ~~~g~~v~~-~~iiit~G~~~al~~~~~~l~~~Gd~Vii~~P~y~~y~~~~~~~g~~~~~v~~~~~----~~~~~~~~~- 156 (391) T 3h14_A 83 EWYGVDLDP-GRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPE----NRLQPVPAD- 156 (391) T ss_dssp HHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGG----GTTSCCHHH- T ss_pred HHCCCCCCC-CCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCC----CCCCCCCCC- T ss_conf 314856667-73599741200688889986089988999825316899999985998977640333----231001222- Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECC Q ss_conf 99850254034215666432334437899999999863787578417502355688876522332102678689985040 Q T0591 172 EEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 251 (406) Q Consensus 172 ~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~S 251 (406) ..+.+++++++||||||||.+++.+++++++++|++++++||+||+|.++.|++..++.+. ..+++|+++|+| T Consensus 157 --~~~~~~~~l~l~~P~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-----~~~~~i~i~s~S 229 (391) T 3h14_A 157 --FAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE-----LTDECYVINSFS 229 (391) T ss_dssp --HTTSCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG-----TCSSSEEEEESS T ss_pred --CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHH-----HHCEEEEEECCC T ss_conf --2333213897336676544322212101220122346864310022310123675434523-----304268984677 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 01046311211433258999999987520367612457999999985652589999999999999999999727994553 Q T0591 252 KTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR 331 (406) Q Consensus 252 K~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 331 (406) |.+++||+|+||++++++++..+.+++.....+++.+.|.++...++. ..+..+.+..+.++++.+.+.+.+..++.+. T Consensus 230 K~~~~~GlRiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (391) T 3h14_A 230 KYFSMTGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDC-DAELQANLDVYKANRKLMLERLPKAGFTRIA 308 (391) T ss_dssp STTCCTTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBC T ss_pred CCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC T ss_conf 678877666641124604556666654100000001789999987303-2025789998765444444431112431755 Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC-CCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 5887307877668878898999999998689189616102679-9985899850997999999999999999856 Q T0591 332 TPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH-TADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 332 ~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) .|+||||+|+++++...++.+|+++|++++||.++||+.||.. +++|+||||+.++|++++|++||++++++.+ T Consensus 309 ~p~gg~f~~~~l~~~~~~~~~~~~~Ll~~~gV~v~PG~~Fg~~~~~~~iRis~~~~~e~l~ea~~rL~~~l~~~~ 383 (391) T 3h14_A 309 PPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARG 383 (391) T ss_dssp CCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC- T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC T ss_conf 888347998989888889999999999849999984221199889998999973999999999999999999858 No 21 >2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=475.62 Aligned_cols=352 Identities=23% Similarity=0.282 Sum_probs=317.8 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 98334156786788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) ...||||+|+||+++ ++.+.+++.+++.+...++|++..|.+++|++|++|+.+++|....+.++|++|+|++++|..+ T Consensus 25 ~~ii~l~~G~p~~~~-p~~v~~a~~~al~~~~~~~Y~~~~G~~~~r~aia~~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 103 (376) T 2dou_A 25 VGLIDLSIGSTDLPP-PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHL 103 (376) T ss_dssp CCCEECSSCCCCCCC-CHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHH T ss_pred CCEEECCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHH T ss_conf 983988899999998-9999999999985877668799879989999999756775186534673079950321014445 Q ss_pred HHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 99997200101013105513899999829969998604466677666778899999850254034215666432334437 Q T0591 118 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 118 ~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) +++++++||.|++++|+|+.|...+...|.+.++++.+ ..+.+|++.+++.++++++++++||||||||.+++. T Consensus 104 ~~~l~~~gd~vl~~~P~y~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~ 177 (376) T 2dou_A 104 LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLR------EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADW 177 (376) T ss_dssp HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBC------TTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCH T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCH T ss_conf 56632554435576422222222331100012222222------333563788888753355258841445651244658 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89999999986378757841750235568887652233210267868998504001046311211433258999999987 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 277 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~ 277 (406) +++++|+++|++++++||+||+|.++.|++..++.+... ...+++|+++||||.|++||+|+||++++++++..+.+. T Consensus 178 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~ 255 (376) T 2dou_A 178 GYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALP--GAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERV 255 (376) T ss_dssp HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGST--TGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHH T ss_pred HHHHHHHHHHHHCEEEEEECCHHHHCCCCCCCCCHHHHC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 889999998764427887520011113345677455431--666768998269752648764544233432222210111 Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 52036761245799999998565258999999999999999999972799455358873078776688788989999999 Q T0591 278 QAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKIL 357 (406) Q Consensus 278 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~L 357 (406) +.....+.++..|.++...+.....+.++.+..++++++.+.+.|.+ ++.+..|+||||+|+++++ +.++.+|+++| T Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~p~gg~~~~~~~~~-~~~~~~~~~~l 332 (376) T 2dou_A 256 KGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG--VLSLLPPRATMYLWGRLPE-GVDDLEFGLRL 332 (376) T ss_dssp HHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT--TSEECCCCBSSEEEEECCT-TCCHHHHHHHH T ss_pred HCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCC--CEEEECCCCEEEEEEECCC-CCCHHHHHHHH T ss_conf 10122332232023444302455433222222223221023455337--4268579812799898999-97999999999 Q ss_pred HHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 986891896161026799985899850997999999999999999 Q T0591 358 RLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 358 l~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~ 402 (406) + ++||.++||+.|+..+++|+|+||+.++|++++|++||+++++ T Consensus 333 ~-e~gV~v~pg~~F~~~~~~~~Ris~~~~~e~l~~ai~rL~~~le 376 (376) T 2dou_A 333 V-ERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREALD 376 (376) T ss_dssp H-HTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC- T ss_pred H-HCCEEEEECHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC T ss_conf 9-7998998341208999997999973899999999999999869 No 22 >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, SGC, alternative splicing, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Probab=100.00 E-value=0 Score=469.95 Aligned_cols=380 Identities=19% Similarity=0.240 Sum_probs=298.8 Q ss_pred HHHHHHHHHHHHHH-HHCCC-CCCEEECCCCCCCC--CC----------------------CHHHHHHHHHHHHC---CC Q ss_conf 89988788999996-30378-98334156786788--78----------------------88999999999980---87 Q T0591 19 EVRQSAAGLEALIR-GAPIE-GRPVDFSHGDVDAH--EP----------------------TPGAFDLFSAGVQS---GG 69 (406) Q Consensus 19 ~~~~~~~~~~~~~~-~~~~~-~~~i~ls~G~pd~~--~p----------------------~~~~~~~~~~~~~~---~~ 69 (406) .+...+..++...+ +.+.. ...|.+++|+|... .| +.++++++.+.+.. .+ T Consensus 42 ~~~~~a~~l~~~~~~~~~~p~~~ii~~~iG~P~~~g~~p~~f~r~v~~~~~~p~l~~~~~~P~~~~~~a~~~l~~~~~~~ 121 (498) T 3ihj_A 42 PIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNS 121 (498) T ss_dssp HHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC---- T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 79999999999615034787561678348785101799507999999861375557877898999999999998536999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHH----HHHHHCCCHHHHHHHHH Q ss_conf 888878888988999999999986-4886788670788248727899999999720010----10131055138999998 Q T0591 70 VQAYTEYRGDLGIRDLLAPRLAAF-TGAPVDARDGLIITPGTQGALFLAVAATVARGDK----VAIVQPDYFANRKLVEF 144 (406) Q Consensus 70 ~~~Y~~~~G~~~Lr~aia~~~~~~-~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~----Vl~~~P~y~~~~~~~~~ 144 (406) ..+|+++.|.++||++||+|++++ +|++++| ++|++|+|++++|.++++++++|||+ |++++|+|+.|...+.. T Consensus 122 ~~~Y~~s~G~~~lReaIA~~~~~r~~g~~~~p-d~I~iT~Ga~~al~~~~~~l~~pGD~~~~~Vlvp~P~Y~~y~~~~~~ 200 (498) T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPADP-DNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498) T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCCG-GGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH-HHEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH T ss_conf 89759970429999999999998518999864-53999288899999999972589976665699945871669999998 Q ss_pred HCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC-----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 299699986044666776667788999998502-----540342156664323344378999999998637875784175 Q T0591 145 FEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQL 219 (406) Q Consensus 145 ~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~ 219 (406) +|++.++++++ .+++|.+|++++++.+++ ++|+++++|||||||.++|.+++++|+++|++++++||+||+ T Consensus 201 ~g~~~v~v~l~----~e~~~~~d~~~l~~~~~~~~~~~~~k~lvl~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DEi 276 (498) T 3ihj_A 201 LDAIQVNYYLD----EENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEV 276 (498) T ss_dssp TTCEEEEEECB----GGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT T ss_pred CCCEEEEEECC----HHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 59889984025----12076779999987888765047825999779958645432289999997630154799997315 Q ss_pred CCCCCCCCC-CCCCHHHHH------CCCCCCEEEEEECCHHC-CCCCCCCHHHHHH---HHHHHHHHHHHHHCCCCHHHH Q ss_conf 023556888-765223321------02678689985040010-4631121143325---899999998752036761245 Q T0591 220 YSRLRYAGA-SYTHLRAEA------AVDAENVVTIMGPSKTE-SLSGYRLGVAFGS---RAIIARMEKLQAIVSLRAAGY 288 (406) Q Consensus 220 Y~~l~~~~~-~~~~~~~~~------~~~~~~~i~~~S~SK~~-~~~GlRiG~~~~~---~~~i~~l~~~~~~~~~~~~~~ 288 (406) |.++.|++. ++.++.... .....++++++|+||.| +++|||+||++.+ .+.+..+.+..+ ....+.. T Consensus 277 Y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 354 (498) T 3ihj_A 277 YQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS--VRLCPPV 354 (498) T ss_dssp TTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH--HSCCCCH T ss_pred CEEEEECCCCCCCCHHHHHHHHCCHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCC--CCCCCCH T ss_conf 63441078877775777544413000256346522455423345775611023312112899999997414--4456638 Q ss_pred HHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC----------- Q ss_conf 799999998565-----------2589999999999999999999727994553588730787766887----------- Q T0591 289 SQAVLRGWFDEA-----------PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL----------- 346 (406) Q Consensus 289 ~q~a~~~~l~~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~----------- 346 (406) .|.++..++... .+..+..+..++++++.+.+.|++++|+++..|+||||+|++++.. T Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~r~~~~~~~l~~i~g~~~~~p~Ga~y~~~~l~~~~~~~~~~~~~~ 434 (498) T 3ihj_A 355 SGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ 434 (498) T ss_dssp HHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTT T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEECCCCCCCHHHHHHCC T ss_conf 99999999865667689999999999888779999999999999974899686278816899896677644112444225 Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCC-CCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 8898999999998689189616102679-9985899850997999999999999999856 Q T0591 347 AVAPAEFVKILRLQAGVVVTPGTEFSPH-TADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 347 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) ..++.+|+.+|++++||+++||+.||.. +++|+|++|+.++|++++|++||++|+++|. T Consensus 435 ~~~d~~f~~~LL~~~gV~v~PGs~Fg~~~g~~~~Ris~~~~~e~l~eal~Ri~~f~~~~~ 494 (498) T 3ihj_A 435 MAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFL 494 (498) T ss_dssp SCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH T ss_conf 787799999999869999974023099999986999974899999999999999999999 No 23 >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=471.02 Aligned_cols=354 Identities=19% Similarity=0.260 Sum_probs=304.7 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 98334156786788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) .+.|+|++|+||++.| +.+.+++.++ .....+|++..|.++||++||+|+++++|+++++ ++|++|+|+++++.++ T Consensus 43 ~~vi~l~~G~P~~~~p-~~i~~al~~~--~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-d~Ivit~Gs~~~l~~~ 118 (409) T 2gb3_A 43 VRIHHLNIGQPDLKTP-EVFFERIYEN--KPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP-ENVLVTNGGSEAILFS 118 (409) T ss_dssp CEEEECSSCCCCSCCC-THHHHHHHHT--CCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-GGEEEESHHHHHHHHH T ss_pred CCEEECCCCCCCCCCC-HHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CEEEEECCHHHHHHHH T ss_conf 9878898988899987-9999999960--7778789998678999999999999985899881-0199938804888999 Q ss_pred HHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 99997200101013105513899999829969998604466677666778899999850254034215666432334437 Q T0591 118 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 118 ~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) +++++++||.|+++.|+|+.|...+...|...++++.+.. ++..+.+.+++....+++++++||||||||.+++. T Consensus 119 ~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~p~NPtG~~~s~ 193 (409) T 2gb3_A 119 FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME-----EGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGK 193 (409) T ss_dssp HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG-----GTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCH T ss_pred HHHCCCCCCEEEECCCCCCCCCCEEECCCCEECCCCCCCC-----CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCH T ss_conf 8741689998997787653200000026841103453445-----55466799998631485299988998998744228 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89999999986378757841750235568887652233210267868998504001046311211433258999999987 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 277 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~ 277 (406) +++++|+++|++|+++||+||+|.++.|++...+... ...+++++++|+||.|++||||+||++++++.+...... T Consensus 194 ~~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~----~~~~~~ivi~s~sK~~~~pGlRiG~~~~~~~~i~~~~~~ 269 (409) T 2gb3_A 194 DEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS----IESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK 269 (409) T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG----SCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHH----HCCCCCEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHH T ss_conf 9999999999988918999678542246898777555----425751797057766668886479994487999999987 Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 52036761245799999998565258999999999999999999972799455358873078776688788989999999 Q T0591 278 QAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKIL 357 (406) Q Consensus 278 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~L 357 (406) ......+.+.+.|.++..++...+.+++..+..++++|+.+.+.|+++.+..+..|+||||+|+++|. .++.+|+++| T Consensus 270 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~p~gg~fl~~~lp~--~~~~~~~~~l 347 (409) T 2gb3_A 270 LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPV--EDAEEFARWM 347 (409) T ss_dssp HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSS--SCHHHHHHHH T ss_pred HCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEECCC--CCHHHHHHHH T ss_conf 51267775189999999998588367999999999999999999986699552588812699995899--9999999999 Q ss_pred HHH-----CCEEEEECCCCCCC---CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 986-----89189616102679---99858998509979999999999999998569 Q T0591 358 RLQ-----AGVVVTPGTEFSPH---TADSVRLNFSQDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 358 l~~-----~gV~v~pG~~Fg~~---~~~~iRis~~~~~e~l~~al~rl~~~~~~~ra 406 (406) +++ +||.++||+.|+.. +++|+||||+.++|++++|++||++++++|.+ T Consensus 348 l~e~~l~~~~v~v~pg~~f~~~~~~g~~~iRis~~~~~e~l~~a~~rL~~~lk~~~~ 404 (409) T 2gb3_A 348 LTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 404 (409) T ss_dssp HHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH T ss_conf 986036429789994750156898889989999638999999999999999999998 No 24 >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Probab=100.00 E-value=0 Score=470.20 Aligned_cols=367 Identities=24% Similarity=0.383 Sum_probs=314.2 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 446888714666615789988788999996303789-8334156786788788899999999998087888878888988 Q T0591 3 IEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEG-RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLG 81 (406) Q Consensus 3 i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 81 (406) ++.|+.++ ..++-.++...+.++++ +| +.|+|++|+||++. ++.+.+++.+++.++ .++|++..|.++ T Consensus 2 ~~~~~~~~--~~~~~~~~~~~a~~l~~-------~G~~vi~l~~g~p~~~~-p~~i~~a~~~~l~~~-~~~Y~~~~G~~~ 70 (370) T 2z61_A 2 LSKRLLNF--ESFEVMDILALAQKLES-------EGKKVIHLEIGEPDFNT-PKPIVDEGIKSLKEG-KTHYTDSRGILE 70 (370) T ss_dssp CCHHHHHC--CCCTTHHHHHHHHHHHH-------TTCCCEECCCCSCSSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHH T ss_pred HHHHHHCC--CCCHHHHHHHHHHHHHH-------CCCCEEECCCCCCCCCC-CHHHHHHHHHHHHCC-CCCCCCCCCCHH T ss_conf 50263139--96199999999999996-------69982899999899988-899999999998548-878999978899 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCC Q ss_conf 99999999998648867886707882487278999999997200101013105513899999829969998604466677 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADE 161 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~ 161 (406) ||+++++|+.++++.++++ ++|++|+|++++|..+++++++|||+|++++|+|+.|...++..|.+.+.++ T Consensus 71 lR~~ia~~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~pGd~vl~~~P~y~~~~~~~~~~g~~~~~~~-------- 141 (370) T 2z61_A 71 LREKISELYKDKYKADIIP-DNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------- 141 (370) T ss_dssp HHHHHHHHHHHHSSCCCCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC-------- T ss_pred HHHHHHHHHHHHCCCCCCC-CCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCC-------- T ss_conf 9999999888745988994-5168657889999999998579939899888982779999997087146567-------- Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCC Q ss_conf 66677889999985025403421566643233443789999999986378757841750235568887652233210267 Q T0591 162 TRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 241 (406) Q Consensus 162 ~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 241 (406) +|+++|++++++++|++++||||||||.+++. +++++|+++++++|+||+|.++.+++....++... ... T Consensus 142 ----~d~e~l~~~l~~~~~~v~l~nP~NPtG~~~s~----e~~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~ 211 (370) T 2z61_A 142 ----FTVESLEEALSDKTKAIIINSPSNPLGEVIDR----EIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFD--ENL 211 (370) T ss_dssp ----SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCH----HHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTC--TTC T ss_pred ----CCHHHHHHHHCCCCCEEEECCCCCCCCCCCHH----HHHHHHHHHCCCEEEEEEEEHHCCCCCCCCEEEEC--CCC T ss_conf ----99999998610388389982998999876628----99999985048679986311001378876502305--777 Q ss_pred CCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8689985040010463112114332589999999875203676124579999999856-525899999999999999999 Q T0591 242 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 242 ~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~ 320 (406) +++|+++||||+|++||+|+||+++++++++.+.+.+.....+.+...|.++..++.. ...+..+.++.++++++.+.+ T Consensus 212 ~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (370) T 2z61_A 212 EKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLK 291 (370) T ss_dssp SSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 81899945803244660224323253577899999874123331159999999998706589999999999865678999 Q ss_pred HHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 99727994553588730787766887889899999999868918961610267999858998509979999999999999 Q T0591 321 VLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTL 400 (406) Q Consensus 321 ~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~ 400 (406) .|++. |+.+..|+||||+|++++ .++.+++.+|++++||.++||+.|+..+++|+|+||+.++|++++|++||+++ T Consensus 292 ~L~~~-g~~~~~p~gg~f~~~~~~---~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~ 367 (370) T 2z61_A 292 YVKDF-GWEVNNPIGAYYVFPNIG---EDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEF 367 (370) T ss_dssp HHHHT-TCBCCCCCBTTEECCBCS---SCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHH T ss_pred HHHHC-CCEECCCCCEEEEEEECC---CCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH T ss_conf 99865-957626880389998589---99999999999859999981522088998979999729899999999999999 Q ss_pred HHH Q ss_conf 998 Q T0591 401 VER 403 (406) Q Consensus 401 ~~~ 403 (406) ++| T Consensus 368 l~k 370 (370) T 2z61_A 368 LNK 370 (370) T ss_dssp HC- T ss_pred HCC T ss_conf 776 No 25 >1wst_A MSAT, multiple substrate aminotransferase; alpha and beta; HET: PLP; 1.95A {Thermococcus profundus} SCOP: c.67.1.1 PDB: 1x0m_A Probab=100.00 E-value=0 Score=469.88 Aligned_cols=362 Identities=22% Similarity=0.325 Sum_probs=302.8 Q ss_pred CCCCEEECCCCCCCCC-CCHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 8983341567867887-8889999999999808--788887888898899999999998648867886707882487278 Q T0591 37 EGRPVDFSHGDVDAHE-PTPGAFDLFSAGVQSG--GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~-p~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) .++.|+|+.|+||+.. |...+.+++.+.+... ...+|++..|.++||++||+|+++++|+++++ ++|++|+|++++ T Consensus 40 ~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-~~I~it~G~~~a 118 (417) T 1wst_A 40 TSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSK-VEIMTVAGSQQA 118 (417) T ss_dssp SSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTT-CEEEEESSHHHH T ss_pred CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CEEEECCCHHHH T ss_conf 9997889886789410699999999999997376002588998674999999999999984898764-058853640278 Q ss_pred HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 99999999720010101310551389999982996999860446667766677889999985025403421566643233 Q T0591 114 LFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV 193 (406) Q Consensus 114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~ 193 (406) +++++.++++|||.|++++|+|+.|...+...|+++++|+++....+........++..+..+....+++++|||||||. T Consensus 119 l~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~ 198 (417) T 1wst_A 119 LDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGV 198 (417) T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCC T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 88999998631234556688711335676412553025631533233200000122221223333222332456888787 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 44378999999998637875784175023556888765223321026786899850400104631121143325899999 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIAR 273 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~ 273 (406) ++|.+++++|+++|++||++||+||+|.+|.|++.+.+++... ...+++++++||||.++ ||||+||+++++++++. T Consensus 199 ~~s~e~l~~i~~la~~~~~~iI~De~Y~~l~~~~~~~~~~~~~--~~~~~~i~i~S~SK~~~-~G~RiG~~~~~~~~i~~ 275 (417) T 1wst_A 199 TMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHF--DDYGRVIYLGTFSKILA-PGFRIGWVAAHPHLIRK 275 (417) T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGG--CSSSCEEEEEESTTTTC-GGGCCEEEEECHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCEEECCCCCHHHHCCCCCCCCCCCCC--CCCCEEEEECCCCCCCC-CCCCEECCCCHHHHHHH T ss_conf 7889999999987650585774454413310588988710136--77863999876435638-87860001113889999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEECCCCCEEEEEECCCCCCC Q ss_conf 998752036761245799999998565--2589999999999999999999727--994553588730787766887889 Q T0591 274 MEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGC--EGVFARTPQAGSYLFPRLPKLAVA 349 (406) Q Consensus 274 l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~--~g~~~~~p~gg~~~w~~~~~~~~~ 349 (406) +...+.....+.+.+.|.+++.++... +.++++.+..|+++++.+.+.+.+. .|+.+..|+||+|+|+++|+ +.+ T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~g~~~~~p~gg~f~~~~l~~-~~d 354 (417) T 1wst_A 276 MEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPE-GID 354 (417) T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCT-TCC T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCC-CCC T ss_conf 9999753012334302344554302442047788889999999999999987636687288168813699998999-999 Q ss_pred HHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEEC-CCHHHHHHHHHHHHHHHHHH Q ss_conf 8999999998689189616102679--9985899850-99799999999999999985 Q T0591 350 PAEFVKILRLQAGVVVTPGTEFSPH--TADSVRLNFS-QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 350 ~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~~~iRis~~-~~~e~l~~al~rl~~~~~~~ 404 (406) +.++.+.| .++||+++||+.|+.. +++|+||||+ .++|++++|++||+++++++ T Consensus 355 ~~~~~~~l-~~~gV~v~pG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rl~~~l~e~ 411 (417) T 1wst_A 355 TKLMMERA-VAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEE 411 (417) T ss_dssp TTTTHHHH-HHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHH-HHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999-9789799933674789998997999956699999999999999999999 No 26 >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Probab=100.00 E-value=0 Score=463.07 Aligned_cols=354 Identities=20% Similarity=0.267 Sum_probs=307.5 Q ss_pred CCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCEEEEECCCCHH Q ss_conf 789-83341567867887888999999999980878888788889889999999999864-8867886707882487278 Q T0591 36 IEG-RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFT-GAPVDARDGLIITPGTQGA 113 (406) Q Consensus 36 ~~~-~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~-g~~~~~~~~I~it~G~~~~ 113 (406) .++ +.|+|++|+||++.| +.+.+++.+++.+ .++|++..|.++||++||+|+++++ |...+++++|++|+|++++ T Consensus 27 ~~g~~vi~l~~g~p~~~~p-~~i~~al~~~~~~--~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~~~i~~t~G~~~~ 103 (396) T 3jtx_A 27 PEGMEAVPLHIGEPKHPTP-KVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREA 103 (396) T ss_dssp CTTCCCEECSCCSCCSCCC-HHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHH T ss_pred CCCCCEEECCCCCCCCCCC-HHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHH T ss_conf 4899868788988999878-9999999998751--789999878999999999999986079879987779982787999 Q ss_pred HHHHHHHHHHCCHH-----HHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC Q ss_conf 99999999720010-----1013105513899999829969998604466677666778899999850254034215666 Q T0591 114 LFLAVAATVARGDK-----VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPN 188 (406) Q Consensus 114 l~~~~~~l~~pGd~-----Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~ 188 (406) +.+++.++++|||. |+++.|+|+.+.......+.+...++. +++++.+|++++++++.+++|++++|||| T Consensus 104 l~~~~~~~~~pgd~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~~~~k~~~l~~P~ 178 (396) T 3jtx_A 104 LFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-----PAPSFNPDWRSISEEVWKRTKLVFVCSPN 178 (396) T ss_dssp HHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-----CTTTCCCCGGGSCHHHHHTEEEEEEESSC T ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCC-----CCCCCCCCHHHHHHHHCCCCEEEEECCCC T ss_conf 9999986235666665205973586443000002212663334677-----77677879999975421475599808986 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHH---HHCCCCCCEEEEEECCHHCCCCCCCCHHHH Q ss_conf 43233443789999999986378757841750235568887652233---210267868998504001046311211433 Q T0591 189 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA---EAAVDAENVVTIMGPSKTESLSGYRLGVAF 265 (406) Q Consensus 189 NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~---~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~ 265 (406) ||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.+... ......++++++.|+||.|++||||+||++ T Consensus 179 NPtG~~~s~e~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlR~G~~i 258 (396) T 3jtx_A 179 NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVA 258 (396) T ss_dssp TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEE T ss_pred CCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEE T ss_conf 98877156899999999987536435762021002047887760443111035665126999157522068773116676 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCC Q ss_conf 25899999998752036761245799999998565258999999999999999999972799455358873078776688 Q T0591 266 GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK 345 (406) Q Consensus 266 ~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~ 345 (406) +++++++++...+.....+.+...|.++...... ..+....++.++++++.+.+.|++. +.+..|+||||+|+++|+ T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~~lw~~~~~ 335 (396) T 3jtx_A 259 GDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVPD 335 (396) T ss_dssp ECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECTT T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCEEEEEECCC T ss_conf 4999999999975530245559999999997422-2113333577799999999999865--885588832189998999 Q ss_pred CCCCHHHHHHHHHHHCCEEEEECCCCCCC------CCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 78898999999998689189616102679------9985899850997999999999999999 Q T0591 346 LAVAPAEFVKILRLQAGVVVTPGTEFSPH------TADSVRLNFSQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 346 ~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~------~~~~iRis~~~~~e~l~~al~rl~~~~~ 402 (406) .++.+|+++|++++||.++||+.|+.. +++|+||||+.++|++++|++||+++++ T Consensus 336 --~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~g~~g~~~iRls~~~~~e~l~ea~~Ri~~~~r 396 (396) T 3jtx_A 336 --GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR 396 (396) T ss_dssp --SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHCC T ss_pred --CCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC T ss_conf --9999999999997899997645526776668888997999974889999999999999739 No 27 >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, chloroplast, plastid; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Probab=100.00 E-value=0 Score=467.52 Aligned_cols=387 Identities=16% Similarity=0.185 Sum_probs=295.2 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCCCC Q ss_conf 46888714666615789988788999996303789833415678678878889999999999808----78888788889 Q T0591 4 EAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSG----GVQAYTEYRGD 79 (406) Q Consensus 4 ~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~----~~~~Y~~~~G~ 79 (406) +.++++|.. +.+..++.+.... .. ....+...|+|++|+||++.| +.+.+++.+++.+. +.++|++..|. T Consensus 27 n~~~~~l~~-~y~f~~i~~~~~~---~~-~~~~~~~vI~l~~G~p~~p~P-~~i~~al~~~~~~~~~~~g~~~Y~~~~G~ 100 (432) T 3ei9_A 27 NSNMSKLQA-GYLFPEIARRRSA---HL-LKYPDAQVISLGIGDTTEPIP-EVITSAMAKKAHELSTIEGYSGYGAEQGA 100 (432) T ss_dssp CHHHHHCCS-SCHHHHHHHHHHH---HH-HHCTTCCCEECSSCCCCSCCC-HHHHHHHHHHHHHTTSTTTCCCCCCTTCC T ss_pred CCCHHHCCC-CCCCHHHHHHHHH---HH-HHCCCCCEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 637133564-5885899999999---99-868999879793888989999-99999999998534654587799975148 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCC Q ss_conf 88999999999986488678867078824872789999999972001010131055138999998299699986044666 Q T0591 80 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSA 159 (406) Q Consensus 80 ~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~ 159 (406) ++||++||+|+++.++ +++ ++|++|+|++++|.++ ..+++|||.|++++|+|+.|...+...|...+.++...... T Consensus 101 ~~LR~aia~~~~~~~~--v~~-e~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~ 176 (432) T 3ei9_A 101 KPLRAAIAKTFYGGLG--IGD-DDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYG 176 (432) T ss_dssp HHHHHHHHHHHHTTTT--CCG-GGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEET T ss_pred HHHHHHHHHHHHCCCC--CCC-CEEEECCCCHHHHHHH-HCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCCC T ss_conf 9999999999965899--894-3377557730423100-00146897405642142415899997178522630210022 Q ss_pred CCCCCCCCHHH---HHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH Q ss_conf 77666778899---999850254034215666432334437899999999863787578417502355688876522332 Q T0591 160 DETRAGLDLTG---LEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE 236 (406) Q Consensus 160 ~~~~~~~d~~~---l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 236 (406) ....+..+.+. .+....+++|++++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++.+.+..... T Consensus 177 ~~~~~~~~~e~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~l~~l~~~a~~~~~~Ii~De~y~~~~~~~~~~~~~~~~ 256 (432) T 3ei9_A 177 NIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIP 256 (432) T ss_dssp TCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGST T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCH T ss_conf 34224579667200234541465589978987545545432002332233332212553032343100146655621000 Q ss_pred HCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHH--------HHHHHHHCCCCHHHHHHHHHHHHH-HCCCHHHHHH Q ss_conf 1026786899850400104631121143325899999--------998752036761245799999998-5652589999 Q T0591 237 AAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIAR--------MEKLQAIVSLRAAGYSQAVLRGWF-DEAPGWMEDR 307 (406) Q Consensus 237 ~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~--------l~~~~~~~~~~~~~~~q~a~~~~l-~~~~~~~~~~ 307 (406) ...+++++++||||.|++||+|+||++++++++.. ..........+.+.+.|..+..+. .+..+++++. T Consensus 257 --~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (432) T 3ei9_A 257 --GAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKV 334 (432) T ss_dssp --TGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHH T ss_pred --HHCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf --000233234565423365544413598189999976311334444202122356514554432200102445579999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCH Q ss_conf 99999999999999972799455358873078776688788989999999986891896161026799985899850997 Q T0591 308 IARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDH 387 (406) Q Consensus 308 ~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~ 387 (406) ++.++++++.+.+.|.+. |+++..|+||||+|+++|+ .++.+++.+|++++||.++||+.||..+++|+||||+.++ T Consensus 335 ~~~~~~~~~~l~~~L~~~-g~~~~~p~gg~f~w~~~p~--~~~~e~~~~ll~~~gV~v~PG~~F~~~~~~~iRis~~~~~ 411 (432) T 3ei9_A 335 IGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPN--QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHR 411 (432) T ss_dssp HHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCH T ss_pred HHHHHHHHHHHHHHHHHC-CCEEECCCCCEEEEEECCC--CCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEEECCH T ss_conf 999999999999999987-9777369971499998999--9989999999985999999352208999896999970899 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999856 Q T0591 388 EAAVAAARRIVTLVERYR 405 (406) Q Consensus 388 e~l~~al~rl~~~~~~~r 405 (406) |++++|++||+++++.+. T Consensus 412 e~l~eal~Rl~~~~k~~~ 429 (432) T 3ei9_A 412 ENILEACRRFKQLYKHHH 429 (432) T ss_dssp HHHHHHHHHHHHHHTTSC T ss_pred HHHHHHHHHHHHHHCCCC T ss_conf 999999999999824325 No 28 >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea; HET: PMP; 2.30A {Thermococcus litoralis} Probab=100.00 E-value=0 Score=458.33 Aligned_cols=393 Identities=22% Similarity=0.296 Sum_probs=315.0 Q ss_pred CCHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHH-H-CCCCCCCCCC Q ss_conf 974468887146--66615789988788999996303789833415678678878889999999999-8-0878888788 Q T0591 1 MSIEAKFKKLGT--DNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGV-Q-SGGVQAYTEY 76 (406) Q Consensus 1 m~i~~~~~r~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~-~-~~~~~~Y~~~ 76 (406) |-++..+++.-. ...+..++.+.+.+ +.. ...+.|||++|+||+..++...++++.+.+ . .+..++|++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~a~~---~~~---~G~~vi~l~~G~P~~~~~p~~~~~~~~~~~~~~~~~~~~Y~~~ 74 (407) T 2zc0_A 1 MDYTKYLAGRANWIKGSALADVMKKASE---LQK---KGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVMYTPA 74 (407) T ss_dssp CCGGGGSCGGGGGCCCCHHHHHHHHHHH---HHH---SSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGSCCCT T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHH---HHH---CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9766899999820785899999999999---996---7998187889458962168999999999998559666776998 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECC Q ss_conf 88988999999999986488678867078824872789999999972001010131055138999998299699986044 Q T0591 77 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDY 156 (406) Q Consensus 77 ~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~ 156 (406) .|.++||++||+|+++++|..+++ ++|++|+|+++++..++++++++||.|+++.|+|+.+.......|++++.+|++. T Consensus 75 ~G~~~lr~aia~~~~~~~~~~~~~-~~I~~~~G~~~~~~~~~~~~~~~g~~v~v~~p~~~~~~~~~~~~~~~~~~vp~~~ 153 (407) T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSP-ENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN 153 (407) T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET T ss_pred CCCHHHHHHHHHHHHHHCCCCCCH-HHEEEECCHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEECC T ss_conf 561999999999999972999786-6889927899999999998458998421258876414566652376303465146 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH Q ss_conf 66677666778899999850254034215666432334437899999999863787578417502355688876522332 Q T0591 157 VSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE 236 (406) Q Consensus 157 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 236 (406) ...+...+..+...+.....+.+++++++|||||||.++|.+++++|+++|+++|++||+||+|+++.|++....+.... T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~e~~~~l~~~a~~~~i~iI~De~Y~~l~~~~~~~~~~~~~ 233 (407) T 2zc0_A 154 DGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKAL 233 (407) T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGG T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCCC T ss_conf 65542001346777764156644999768999986730689999999999997691899835312203588876641013 Q ss_pred HCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH Q ss_conf 10267868998504001046311211433258999999987520367612457999999985652---589999999999 Q T0591 237 AAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQA 313 (406) Q Consensus 237 ~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~ 313 (406) +.++.+++.|+||.+++||+|+||+++++++++++.++......+++.+.|.+++.++.++. .+.+..+..+++ T Consensus 234 ---~~~~~i~~~s~sK~~~~~GlR~G~~v~~~~~i~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~ 310 (407) T 2zc0_A 234 ---DNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKE 310 (407) T ss_dssp ---CSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHH T ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf ---62125455687778868987632253589999999999776503688499999999997363356788888889999 Q ss_pred HHHHHHHHHHH-CCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCC--CCCCEEEEEEC-CCHHH Q ss_conf 99999999972-7994553588730787766887889899999999868918961610267--99985899850-99799 Q T0591 314 IRDELLHVLRG-CEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP--HTADSVRLNFS-QDHEA 389 (406) Q Consensus 314 ~r~~l~~~L~~-~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~~~iRis~~-~~~e~ 389 (406) +++.+.+.|.+ ..++.+..|+||+|+|+++|+ +.++.+++++|++++||.++||+.|+. .+++|+|+||+ .++|+ T Consensus 311 r~~~~~~~l~~~~~~~~~~~p~gg~f~~~~l~~-~~~~~~~~~~ll~~~gV~v~PGs~F~~~~~~~~~iRis~~~~~~e~ 389 (407) T 2zc0_A 311 KRDIMLKALENHLPNAEFTKPIAGMFVMFFLPE-GADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEE 389 (407) T ss_dssp HHHHHHHHHHHHCTTSCBCCCSBSSEEEEECST-TCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTH T ss_pred HHHHHHHHHHHCCCCCEECCCCCCEEEEEECCC-CCCHHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHH T ss_conf 999999999833898567279973599998999-9899999999999799999923552789998997999958799999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999985 Q T0591 390 AVAAARRIVTLVERY 404 (406) Q Consensus 390 l~~al~rl~~~~~~~ 404 (406) +++|++||++++++. T Consensus 390 l~~al~rl~~~~~e~ 404 (407) T 2zc0_A 390 IPIGIKKLAKLYKEK 404 (407) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999998 No 29 >1m7y_A ACC synthase, 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, pyridoxal phosphate, lyase; HET: PPG; 1.60A {Malus x domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1ynu_A* 1b8g_A* Probab=100.00 E-value=0 Score=461.33 Aligned_cols=388 Identities=17% Similarity=0.260 Sum_probs=303.0 Q ss_pred HHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCC---CCCEEECCCCCCCCCCCHHHHH-HHHHHHH-----CC------CC Q ss_conf 8871466661578998-878899999630378---9833415678678878889999-9999998-----08------78 Q T0591 7 FKKLGTDNAPGQEVRQ-SAAGLEALIRGAPIE---GRPVDFSHGDVDAHEPTPGAFD-LFSAGVQ-----SG------GV 70 (406) Q Consensus 7 ~~r~g~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~ls~G~pd~~~p~~~~~~-~~~~~~~-----~~------~~ 70 (406) ++|.|+.+...++... .+.+... .+..... ...|+|++++..+- .+.++ .+.+... .. .. T Consensus 4 ~~~~~~~~~~~~~s~y~~g~~~~~-~~~y~~~~np~G~I~l~~aen~l~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (435) T 1m7y_A 4 LSRNATFNSHGQDSSYFLGWQEYE-KNPYHEVHNTNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAEL 79 (435) T ss_dssp CCSTTC-------CHHHHHHHHHH-HSBCCSSSCTTSBEECSSCCCCSC---HHHHHHHHHHCCTGGGTEETTEECHHHH T ss_pred HHHHHCCCCCCCCCCCHHHHHHHH-CCCCCCCCCCCCEEEECCCCCCCC---HHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 212222588777885043023553-599886669986799436767423---6778998861997666665455530886 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH-HCC Q ss_conf 88878888988999999999986488--678867078824872789999999972001010131055138999998-299 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGA--PVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF-FEG 147 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~--~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~-~g~ 147 (406) .+|++..|.++||++||+|+++++|. +++| ++|++|+|++++|++++.++++|||.|++++|+|+.|...+.. .|. T Consensus 80 ~~Y~~~~G~~~LR~aiA~~~~~~~g~~~~~~p-e~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~ 158 (435) T 1m7y_A 80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP-NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGV 158 (435) T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG-GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCC T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH-HHEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCC T ss_conf 17949816299999999999998589999884-21998489999999999997389898999089861078999995896 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHC------CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 69998604466677666778899999850------254034215666432334437899999999863787578417502 Q T0591 148 EMVPVQLDYVSADETRAGLDLTGLEEAFK------AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 148 ~~v~v~~~~~~~~~~~~~~d~~~l~~~~~------~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) +.++|+++ .+++|.+|++++++.+. .+++++++||||||||.+++.+++++|+++|++++++||+||+|. T Consensus 159 ~~v~v~~~----~~~~~~~d~~~l~~~~~~~~~~~~~~~~i~l~nP~NPtG~~~s~~~l~~i~~~a~~~~i~vI~De~Y~ 234 (435) T 1m7y_A 159 EIVPIHCT----SSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS 234 (435) T ss_dssp EEEEEECC----GGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG T ss_pred EEEEECCC----HHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 69985156----14214689999999988887615875899978999984412009999999752211787999972233 Q ss_pred CCCCCCCCCCCHHHHHC--------CCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 35568887652233210--------2678689985040010463112114332589999999875203676124579999 Q T0591 222 RLRYAGASYTHLRAEAA--------VDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVL 293 (406) Q Consensus 222 ~l~~~~~~~~~~~~~~~--------~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~ 293 (406) ++.|++.++.++..... ...+++++++||||.|+++|+|+||++++++++........ ....+++..|.++ T Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~l~s~SK~~~~~G~R~G~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (435) T 1m7y_A 235 GTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQHLL 313 (435) T ss_dssp GGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG-GGSCCCHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHCCCCEEEEEECCHHHHHHHHHHHH-CCCCCCCHHHHHH T ss_conf 123468887788997422264323456614999945832220457579998578899999999974-4255665579999 Q ss_pred HHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCC-----CCHHHHHHHHHHHCCEEE Q ss_conf 9998565---25899999999999999999997279945535887307877668878-----898999999998689189 Q T0591 294 RGWFDEA---PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVV 365 (406) Q Consensus 294 ~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~-----~~~~~~~~~Ll~~~gV~v 365 (406) .+.+.+. +.++.+.+..++++++.+.+.|++ .|+++..|+||||+|++++... .++.+|+++|++++||.+ T Consensus 314 ~a~l~~~~~~~~~~~~~~~~~~~r~~~l~~~L~~-~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v 392 (435) T 1m7y_A 314 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNI 392 (435) T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEEC T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEE T ss_conf 9999733121444567789999999999999862-797773699505998988454466764379999999999789999 Q ss_pred EECCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHHHC Q ss_conf 61610267999858998509-97999999999999999856 Q T0591 366 TPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 366 ~pG~~Fg~~~~~~iRis~~~-~~e~l~~al~rl~~~~~~~r 405 (406) +||+.|+..+++|+|++|+. +++++++|++||++++++|+ T Consensus 393 ~PG~~F~~~~~g~iRi~~a~~~~~~l~~al~Rl~~~l~e~~ 433 (435) T 1m7y_A 393 SPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435) T ss_dssp EEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC T ss_pred ECCHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC T ss_conf 80500289998979999585999999999999999999714 No 30 >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83} Probab=100.00 E-value=0 Score=460.66 Aligned_cols=391 Identities=15% Similarity=0.125 Sum_probs=314.6 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 44688871466661578998878899999630378983341567867887888999999999980878888788889889 Q T0591 3 IEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGI 82 (406) Q Consensus 3 i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~L 82 (406) |.++++.+...+...+.+++...-...+.+. ...+.|+|++|+||++.| +.+++++.+++.++..++|++..|.++| T Consensus 11 ~~~~~~~~~~~~l~~~~~r~~~~~~~~~~~~--~g~~vi~l~~G~pd~~~P-~~~~~~~~~~~~~~~~~~Y~~~~G~~~l 87 (437) T 3g0t_A 11 IREKQNELHIKDLGMASIRDLVALVTNLEKA--TGTKFCRMEMGVPGLPAP-QIGIETEIQKLREGVASIYPNLDGLPEL 87 (437) T ss_dssp HHHHHHHHTCSCGGGCCHHHHHHHHHHHHHH--HTCCCEECCCCSCCSCCC-HHHHHHHHHHHHHTGGGSCCCTTCCHHH T ss_pred HHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH--CCCCEEECCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCHHH T ss_conf 8610002101026810589999999898983--799627789979899876-9999999999749987888997473999 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH----HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCC Q ss_conf 9999999998648867886707882487278999999997----200101013105513899999829969998604466 Q T0591 83 RDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV----ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS 158 (406) Q Consensus 83 r~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~----~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~ 158 (406) |++||+|+.+++|+++++ ++|++|+|+++++..++.+++ ++||.|++++|+|+.|...++.+|++++++++. T Consensus 88 r~aia~~~~~~~g~~~~~-~~I~vt~G~~~~l~~a~~~~~~~~~~~gd~vli~~P~y~~y~~~~~~~g~~~~~v~~~--- 163 (437) T 3g0t_A 88 KQEASRFAKLFVNIDIPA-RACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF--- 163 (437) T ss_dssp HHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG--- T ss_pred HHHHHHHHHHHHCCCCCH-HHEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC--- T ss_conf 999999998986889867-8599847928999999999986178999989991697416899999817755567763--- Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHH--- Q ss_conf 67766677889999985025403421566643233443789999999986378757841750235568887652233--- Q T0591 159 ADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA--- 235 (406) Q Consensus 159 ~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~--- 235 (406) +++++.++.+.++...+++++++++||||||||.++|.+++++|+++|++||++||+||+|+++.|++....+... T Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~ii~~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~f~~~~~~~~~~~~~ 242 (437) T 3g0t_A 164 -EYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQ 242 (437) T ss_dssp -GGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCC T ss_pred -CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC T ss_conf -1001131588999851589559998699698775555441477776530234644454331000026766776432111 Q ss_pred -HHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHH Q ss_conf -210267868998504001046311211433258999999987------------------5203676124579999999 Q T0591 236 -EAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL------------------QAIVSLRAAGYSQAVLRGW 296 (406) Q Consensus 236 -~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~------------------~~~~~~~~~~~~q~a~~~~ 296 (406) ......+++|+++||||.|++||||+||+++|+++++++... ......+++.+.|.++..+ T Consensus 243 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~i~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~ 322 (437) T 3g0t_A 243 PSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAM 322 (437) T ss_dssp CCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHH T ss_pred HHHHCCCCEEEEEEECCHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf 33405577699998581422893616699998899999999999999877655401242345543126775999999999 Q ss_pred HH---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-----CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEC Q ss_conf 85---652589999999999999999999727994553-----5887307877668878898999999998689189616 Q T0591 297 FD---EAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR-----TPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPG 368 (406) Q Consensus 297 l~---~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-----~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG 368 (406) ++ +...++++.+..|+++|+.+.+.|.+. |+... .|.+|+|+|++++..+.++.+|+.+|++ +|++++|+ T Consensus 323 l~~~~~~~~~~~~~~~~y~~rr~~l~~~L~~~-g~~~~~~~~~~~~~g~~~~~~l~~~~~d~~e~~~~ll~-~g~~~vp~ 400 (437) T 3g0t_A 323 LKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVR-YGMCAITL 400 (437) T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHH-TTEECEES T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH-CCCEEECC T ss_conf 86440239999999999999999999999975-98555677778885589999878999899999999997-09899817 Q ss_pred CCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHH Q ss_conf 1026799985899850-9979999999999999998 Q T0591 369 TEFSPHTADSVRLNFS-QDHEAAVAAARRIVTLVER 403 (406) Q Consensus 369 ~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~~~~~~ 403 (406) ..||.....++|+|++ .+++++.++.+||+.+-.+ T Consensus 401 ~~~g~~~~~~lRi~~s~~~e~~i~~l~~rL~~L~~e 436 (437) T 3g0t_A 401 KTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437) T ss_dssp TTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC T ss_conf 877888999799996789988999999999888738 No 31 >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, lyase; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Probab=100.00 E-value=0 Score=465.28 Aligned_cols=354 Identities=15% Similarity=0.283 Sum_probs=290.7 Q ss_pred CCEEECCCCCCCCCCCHHHHH-HHHHHH---------H-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCCEEE Q ss_conf 833415678678878889999-999999---------8-0878888788889889999999999864886--78867078 Q T0591 39 RPVDFSHGDVDAHEPTPGAFD-LFSAGV---------Q-SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP--VDARDGLI 105 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~-~~~~~~---------~-~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~--~~~~~~I~ 105 (406) ..|+++.++++... +..+ .+.... . .....+|++.+|.++||++||+|+++++|.. +++ ++|+ T Consensus 37 ~~i~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~i~~~~-e~I~ 112 (428) T 1iay_A 37 GVIQMGLAENQLCL---DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDP-ERVV 112 (428) T ss_dssp SBEECSSCCCCSSH---HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCT-TSCE T ss_pred CEEEECCCCCCCCH---HHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH-HHEE T ss_conf 74771467875441---3456554048167899875417834258999837099999999999998599999875-4499 Q ss_pred EECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH-HCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC------CC Q ss_conf 824872789999999972001010131055138999998-29969998604466677666778899999850------25 Q T0591 106 ITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF-FEGEMVPVQLDYVSADETRAGLDLTGLEEAFK------AG 178 (406) Q Consensus 106 it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~-~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~------~~ 178 (406) +|+|+++++.++++++++|||+|++++|+|+.|...+.. .|.++++|+++ .+++|.+|.+.+++.+. ++ T Consensus 113 it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~~g~~~v~v~~~----~~~~~~~~~~~l~~~~~~~~~~~~~ 188 (428) T 1iay_A 113 MAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCE----SSNNFKITSKAVKEAYENAQKSNIK 188 (428) T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCC----TTTTTCCCHHHHHHHHHHHHHTTCC T ss_pred EECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECC----CCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 938999999999999759969899828981889999999679758986324----4457643510335677777523788 Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHC------CCCCCEEEEEECCH Q ss_conf 403421566643233443789999999986378757841750235568887652233210------26786899850400 Q T0591 179 ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAA------VDAENVVTIMGPSK 252 (406) Q Consensus 179 ~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK 252 (406) +|++++||||||||.++|.+++++|+++|++|+++||+||+|+++.|++.++.++..... ...+++|+++|||| T Consensus 189 ~k~i~l~~P~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~S~SK 268 (428) T 1iay_A 189 VKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSK 268 (428) T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTT T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEEECCCHH T ss_conf 26999878999986024168899987324551699998444333334665676877736043200235774799802704 Q ss_pred HCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 104631121143325-899999998752036761245799999998565---2589999999999999999999727994 Q T0591 253 TESLSGYRLGVAFGS-RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELLHVLRGCEGV 328 (406) Q Consensus 253 ~~~~~GlRiG~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 328 (406) .|++||||+||++++ +.+++.+.++++. ...+++.|.++..++... +.++++.++.++++++.+.+.|.. .|+ T Consensus 269 ~~~~~GlRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi 345 (428) T 1iay_A 269 DMGLPGFRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-VGI 345 (428) T ss_dssp TSSCGGGCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC T ss_pred HCCCCCCCEEEEEEEHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC T ss_conf 10796613799997059999999997156--888868999999999670327888999999999999999999861-898 Q ss_pred EEECCCCCEEEEEECCCCC-----CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH Q ss_conf 5535887307877668878-----89899999999868918961610267999858998509-97999999999999999 Q T0591 329 FARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVE 402 (406) Q Consensus 329 ~~~~p~gg~~~w~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~l~~al~rl~~~~~ 402 (406) ++..|+||||+|++++... .++.+|++.|++++||.++||+.||..+++|+||||+. +++++++|++||++++. T Consensus 346 ~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~iRis~~~~~~~~l~~al~ri~~~lg 425 (428) T 1iay_A 346 KCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVG 425 (428) T ss_dssp CBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHH T ss_pred EEECCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 88358963599897731004577889999999999869999982233089999979999567999999999999999967 Q ss_pred H Q ss_conf 8 Q T0591 403 R 403 (406) Q Consensus 403 ~ 403 (406) . T Consensus 426 ~ 426 (428) T 1iay_A 426 V 426 (428) T ss_dssp T T ss_pred C T ss_conf 6 No 32 >1vp4_A Aminotransferase, putative; TM1131, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima MSB8} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=457.64 Aligned_cols=382 Identities=22% Similarity=0.325 Sum_probs=310.1 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCH-HHHHHHHHHHHCC--CCCCCCCCCCC Q ss_conf 44688871466661578998878899999630378983341567867887888-9999999999808--78888788889 Q T0591 3 IEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTP-GAFDLFSAGVQSG--GVQAYTEYRGD 79 (406) Q Consensus 3 i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~-~~~~~~~~~~~~~--~~~~Y~~~~G~ 79 (406) ++.|+++.+....+ +.+++ +.+. ...++.|+|+.|.||+..+++ .+.+++.+.+... ...+|++..|. T Consensus 17 ~~~~~s~~~~~~~~-s~ir~-------~~~~-~~~~~~I~l~~G~Pd~~~~P~~~l~~~~~~~~~~~~~~~~~Y~~~~G~ 87 (425) T 1vp4_A 17 LEGKISKIGQNMKS-SIIRE-------ILKF-AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGD 87 (425) T ss_dssp HHHHCCHHHHTCCC-CCHHH-------HTTT-TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCC T ss_pred HHHHHHHHHHHCCC-CHHHH-------HHHH-HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 89998699873897-39999-------9998-579997889985889653898999999999985387434688998677 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCC Q ss_conf 88999999999986488678867078824872789999999972001010131055138999998299699986044666 Q T0591 80 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSA 159 (406) Q Consensus 80 ~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~ 159 (406) ++||++||+|+++++|++..++++|++|+|+++++.+++.++++|||.|++++|+|+.|...++.+|++++.++.+.. T Consensus 88 ~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-- 165 (425) T 1vp4_A 88 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-- 165 (425) T ss_dssp HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-- T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-- T ss_conf 999999999999984999999315999154146677777653113442333344443201345432011223345432-- Q ss_pred CCCCCCCCHHHHHHHH---------CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC Q ss_conf 7766677889999985---------0254034215666432334437899999999863787578417502355688876 Q T0591 160 DETRAGLDLTGLEEAF---------KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASY 230 (406) Q Consensus 160 ~~~~~~~d~~~l~~~~---------~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~ 230 (406) +.+++.++... +..+.+++++|||||||.+++.+++++++++|++|++++|+||+|.+|.|++... T Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 240 (425) T 1vp4_A 166 -----GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETV 240 (425) T ss_dssp -----EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCC T ss_pred -----CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCC T ss_conf -----233102333234566776415764577606899875057740035565554330244433342102000123455 Q ss_pred CCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHH Q ss_conf 5223321026786899850400104631121143325899999998752036761245799999998565--25899999 Q T0591 231 THLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRI 308 (406) Q Consensus 231 ~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~ 308 (406) .+.... ...+++|+++|+||.++ ||||+||+++++++++++.+.+.....+++++.|.+++.++.+. .+++++.+ T Consensus 241 ~~~~~~--~~~~~~i~~~s~sK~~~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~ 317 (425) T 1vp4_A 241 DPIFKI--GGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTI 317 (425) T ss_dssp CCHHHH--HCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHH T ss_pred CCCCCC--CCCCCCEEEEECCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 653222--45653138840365556-645533234553032233433231024677045677777622454214566789 Q ss_pred HHHHHHHHHHHHHHHH----CCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCC--CCEEEEE Q ss_conf 9999999999999972----799455358873078776688788989999999986891896161026799--9858998 Q T0591 309 ARHQAIRDELLHVLRG----CEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHT--ADSVRLN 382 (406) Q Consensus 309 ~~~~~~r~~l~~~L~~----~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~--~~~iRis 382 (406) ..|+++++.+.+.|.+ ++|+++..|+||||+|+++|+ +.++.++++.| .++||.++||+.|+..+ .+|+|+| T Consensus 318 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~p~gg~f~~~~~p~-~~d~~~~~~~l-~~~gV~v~PG~~F~~~~~~~~~iRls 395 (425) T 1vp4_A 318 ELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE-GFDTWEMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLS 395 (425) T ss_dssp HHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT-TCCTTTTHHHH-HHHTEECEEGGGGCTTCCCCSEEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCC-CCCHHHHHHHH-HHCCEEEEECHHHCCCCCCCCEEEEE T ss_conf 99888888877777654124788366179944799998999-99999999999-97996998114528899989989999 Q ss_pred EC-CCHHHHHHHHHHHHHHHHHHC Q ss_conf 50-997999999999999999856 Q T0591 383 FS-QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 383 ~~-~~~e~l~~al~rl~~~~~~~r 405 (406) |+ .++|++++|++||++++++|+ T Consensus 396 ~~~~~~e~l~~a~~rl~~~l~e~~ 419 (425) T 1vp4_A 396 FCLPPDEKIVEGIKRLREVVLEYG 419 (425) T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 584999999999999999999851 No 33 >3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Probab=100.00 E-value=0 Score=456.77 Aligned_cols=391 Identities=16% Similarity=0.195 Sum_probs=305.8 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC---------- Q ss_conf 9744688871466661578998878899999630378983341567867887888999999999980878---------- Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGV---------- 70 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~---------- 70 (406) |.++..-+|+. .... +.+...+ +..........|+|+.|+|+..+++...+.+..+.+..... T Consensus 2 m~~s~~~~~~~-~~~~---i~~l~~~---l~~~~~~~~~~i~l~~G~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (444) T 3if2_A 2 MKFSKFGQKFT-QPTG---ISQLMDD---LGDALKSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAII 74 (444) T ss_dssp CCCCHHHHHHH-SCCH---HHHHHHH---HHHHHHSSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHH T ss_pred CCHHHHHHHHH-CCCC---HHHHHHH---HHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 86607888741-5453---9999999---987875799868899989888987679999999986175434555442032 Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---------------CCHHHHHHHC Q ss_conf --88878888988999999999986488678867078824872789999999972---------------0010101310 Q T0591 71 --QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA---------------RGDKVAIVQP 133 (406) Q Consensus 71 --~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---------------pGd~Vl~~~P 133 (406) .+|++..|.++||++||+|+++++|+++++ ++|++|+|++++|.++++++++ +||.|++++| T Consensus 75 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-e~I~it~G~~~al~~~~~~l~~~~~~~~~~~~~~~~~~~~~vl~~~P 153 (444) T 3if2_A 75 SMANYSNPQGDSAFIDALVGFFNRHYDWNLTS-ENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTP 153 (444) T ss_dssp HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSS T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCC T ss_conf 12628998679999999999999985899981-02999688899999999999742024432222234799968996787 Q ss_pred CCHHHHHHHHHHCCEEEEEEECCCCC--C---CCCCCCCHHHHHH---HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 55138999998299699986044666--7---7666778899999---85025403421566643233443789999999 Q T0591 134 DYFANRKLVEFFEGEMVPVQLDYVSA--D---ETRAGLDLTGLEE---AFKAGARVFLFSNPNNPAGVVYSAEEIGQIAA 205 (406) Q Consensus 134 ~y~~~~~~~~~~g~~~v~v~~~~~~~--~---~~~~~~d~~~l~~---~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~ 205 (406) +|+.|...+...|...+.+|+..... . ...+++|++++++ ..++++|++++||||||||.++|.+++++|++ T Consensus 154 ~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~d~e~le~~~~~~~~~~k~i~l~nP~NPTG~~~s~~~l~~l~~ 233 (444) T 3if2_A 154 EYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAE 233 (444) T ss_dssp CCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHH T ss_pred CCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 65338999998698577523402456662125664326799999999716889659998999699680278999999987 Q ss_pred HHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 98637875784175023556888765223321026786899850400104631121143325899999998752036761 Q T0591 206 LAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRA 285 (406) Q Consensus 206 ~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~ 285 (406) +|++||++||+||+|+++.+++..... .....+++|+++|+|| |++||||+||+++++++++.+.+++.....++ T Consensus 234 ~a~~~~~~iI~De~y~~~~~~~~~~~~----~~~~~~~vi~~~s~SK-~~~~G~RiG~~v~~~~~i~~~~~~~~~~~~~~ 308 (444) T 3if2_A 234 IAKRYDIPLIIDNAYGMPFPNIIYSDA----HLNWDNNTILCFSLSK-IGLPGMRTGIIVADAKVIEAVSAMNAVVNLAP 308 (444) T ss_dssp HHHHTTCCEEEECTTCTTTTCCBCSCC----CCCCCTTEEEEEESTT-TTCGGGCCEEEECCHHHHHHHHHHHHHHHSSC T ss_pred HHHCCCEEEEEECCCCCCCCCCCHHHH----CCCCCCEEEEECCCCC-CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 754042168866454433455411110----0145640444125554-45677740054521999999997521036665 Q ss_pred HHHHHHHHHHHHHCCC--HHH-HHHHHHHHHHHHHHHHHHHHCC---CCEEECCCCCEEEEEECCCCCCCHHHHHHHHHH Q ss_conf 2457999999985652--589-9999999999999999997279---945535887307877668878898999999998 Q T0591 286 AGYSQAVLRGWFDEAP--GWM-EDRIARHQAIRDELLHVLRGCE---GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRL 359 (406) Q Consensus 286 ~~~~q~a~~~~l~~~~--~~~-~~~~~~~~~~r~~l~~~L~~~~---g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~ 359 (406) +.+.|.++..++.... .+. ...+..++++++.+.+.|.+.. ++.+..|+||||+|+++++...++.+|+..| . T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l-~ 387 (444) T 3if2_A 309 TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL-K 387 (444) T ss_dssp CCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH-H T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHH-H T ss_conf 569999999975201455668888998899999999999997525168368258940799998899998999999999-9 Q ss_pred HCCEEEEECCCCCCC--------CCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 689189616102679--------9985899850997999999999999999856 Q T0591 360 QAGVVVTPGTEFSPH--------TADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 360 ~~gV~v~pG~~Fg~~--------~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) ++||+++||+.|++. +++|+|+||+.++|++++|++||+++++++. T Consensus 388 ~~gv~v~pg~~f~~g~~~~~~~~~~~~vRls~~~~~e~l~~~i~~l~~~l~~l~ 441 (444) T 3if2_A 388 AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELY 441 (444) T ss_dssp HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHH T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH T ss_conf 689099976002775333566778997999955899999999999999999986 No 34 >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.19A {Helicobacter pylori 26695} Probab=100.00 E-value=0 Score=452.73 Aligned_cols=356 Identities=19% Similarity=0.185 Sum_probs=293.3 Q ss_pred HHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE Q ss_conf 99996303789833415678678878889999999999808788887888898899999999998648867886707882 Q T0591 28 EALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIIT 107 (406) Q Consensus 28 ~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it 107 (406) .++..........||||+|+||+++| +.+.+++++.+. ..++|++..|.++||++||+|+++++|..+++ ++|++| T Consensus 13 ~~l~~~~~~~~~~I~l~~g~pd~~~p-~~i~~a~~~~~~--~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~-~~i~it 88 (376) T 3ezs_A 13 RALLKEITPKKRGLDLGIGEPQFETP-KFIQDALKNHTH--SLNIYPKSAFEESLRAAQRGFFKRRFKIELKE-NELIST 88 (376) T ss_dssp HHHHTTCCCSSCCCBCSSCCCCSCCC-HHHHHHHHTTGG--GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCG-GGEEEE T ss_pred HHHHHHHCCCCCEEECCCCCCCCCCC-HHHHHHHHHHHH--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHEEEC T ss_conf 99986445898847796999989777-999999998763--77779988577999999999999985899975-768974 Q ss_pred CCCCHHHHHHHHH--HHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECC Q ss_conf 4872789999999--97200101013105513899999829969998604466677666778899999850254034215 Q T0591 108 PGTQGALFLAVAA--TVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS 185 (406) Q Consensus 108 ~G~~~~l~~~~~~--l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 185 (406) +|+++++..++.. ++++||.|++++|+|..+...+...|...+.++.+... .+..+.+ .+..+++|++++| T Consensus 89 ~G~~~al~~i~~~~~~~~~~~~Vl~p~P~y~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~---~~~~~~~~~~il~ 161 (376) T 3ezs_A 89 LGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN----DFTPSLN---EKELQEVDLVILN 161 (376) T ss_dssp SSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG----TSCCCCC---HHHHHHCSEEEEC T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEECCCCCCC----CCCCHHH---HHHCCCCCEEEEC T ss_conf 78799999999998624799989978874620366787627604512543345----4430378---8750687389989 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHH---HHHCCCCCCEEEEEECCHHCCCCCCCCH Q ss_conf 6664323344378999999998637875784175023556888765223---3210267868998504001046311211 Q T0591 186 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLR---AEAAVDAENVVTIMGPSKTESLSGYRLG 262 (406) Q Consensus 186 ~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~---~~~~~~~~~~i~~~S~SK~~~~~GlRiG 262 (406) |||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.... .......+++|+++|+||.|++||+|+| T Consensus 162 nP~NPtG~~~s~~~l~~i~~~~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G 241 (376) T 3ezs_A 162 SPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSG 241 (376) T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCE T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEE T ss_conf 99798774530778999986221567489942762442068988733331101364456878999525324668764310 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEE Q ss_conf 43325899999998752036761245799999998565258999999999999999999972799455358873078776 Q T0591 263 VAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPR 342 (406) Q Consensus 263 ~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~ 342 (406) |+++++++++.+.+.+....++++++.|..+..+... +.+.+..+..++++++.+.+.+.+ +..|+||||+|++ T Consensus 242 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~~~~ 315 (376) T 3ezs_A 242 FIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFKN-----TLIYPYSFYVYLP 315 (376) T ss_dssp EEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHSTT-----CCCCSBSSEEEEE T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCEEEEEEE T ss_conf 0008999999999999863775647999999999739-588999999999999999997532-----5789955899964 Q ss_pred CCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 68878898999999998689189616102679--998589985099799999999999999985 Q T0591 343 LPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH--TADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 343 ~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) ++ ++.+|+++|++++||+++||+.||.. +++|+||||+.++|++++|++||++++++| T Consensus 316 ~~----~~~~~~~~Ll~e~gV~v~PG~~Fg~~~~g~~~iRis~~~~~e~l~~al~rl~~~~e~h 375 (376) T 3ezs_A 316 VQ----NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENH 375 (376) T ss_dssp CS----CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC- T ss_pred CC----CHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC T ss_conf 79----9999999999859999981044289988899699997188999999999999999966 No 35 >3ele_A Amino transferase; RER070207001803, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PLP; 2.10A {Eubacterium rectale} Probab=100.00 E-value=0 Score=449.20 Aligned_cols=383 Identities=22% Similarity=0.291 Sum_probs=312.4 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC---CCCCCCCC Q ss_conf 974468887146666157899887889999963037898334156786788788899999999998087---88887888 Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGG---VQAYTEYR 77 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~---~~~Y~~~~ 77 (406) |-++|++.++++.....+++...+....+... ....||||+|+||++. ++.+.+++.+.+.+.. .++|++.. T Consensus 2 ~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~g----~~~vi~ls~G~p~~~~-p~~v~~a~~~~~~~~~~~~~~~Y~~~~ 76 (398) T 3ele_A 2 MVVNESMYQLGSVRSAIRELFEYGKKRAAIVG----KENVYDFSIGNPSIPA-PQIVNDTIKELVTDYDSVALHGYTSAQ 76 (398) T ss_dssp CSSCHHHHHHHHCCCHHHHHHHHHHHHHHHHC----GGGCEECCSCCCCSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTT T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC----CCCEEECCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 84679998737887589999999999888639----9986899998999998-999999999998576555666989987 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-HHHHHHHCCCHHHHHHHHHHCCEEEEEEECC Q ss_conf 898899999999998648867886707882487278999999997200-1010131055138999998299699986044 Q T0591 78 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARG-DKVAIVQPDYFANRKLVEFFEGEMVPVQLDY 156 (406) Q Consensus 78 G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pG-d~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~ 156 (406) |+++||++||+|+++++|+++++ ++|++|+|++++|.+++.+++++| |.|+++.|+|+.|.......|...+.++. T Consensus 77 G~~~lR~aia~~l~~~~g~~~~~-d~I~it~G~~~al~~~~~~l~~~g~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (398) T 3ele_A 77 GDVETRAAIAEFLNNTHGTHFNA-DNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA-- 153 (398) T ss_dssp CCHHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECC-- T ss_pred CCHHHHHHHHHHHHHHCCCCCCC-CCEEEEECCCHHHCCHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEE-- T ss_conf 89999999999999863976355-522786211021110123201234664402101102456788873686414542-- Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC------CEEEECCCCCCCCCCCCCC Q ss_conf 6667766677889999985025403421566643233443789999999986378------7578417502355688876 Q T0591 157 VSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG------ATVIADQLYSRLRYAGASY 230 (406) Q Consensus 157 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~------~~ii~De~Y~~l~~~~~~~ 230 (406) +++++.+|++.+++.+++++++++++|||||||.+++.+++++++++|++|+ +++|+||+|.++.+++... T Consensus 154 ---~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptg~~~~~~~~~~l~~~~~~~~~~~~~~i~ii~De~y~~~~~~~~~~ 230 (398) T 3ele_A 154 ---DTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKV 230 (398) T ss_dssp ---CTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCC T ss_pred ---ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC T ss_conf ---02224568899998751466432345445677543333332221014556554146521566302120222233443 Q ss_pred CCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCCHHHHHH Q ss_conf 5223321026786899850400104631121143325899999998752036761245799999---9985652589999 Q T0591 231 THLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLR---GWFDEAPGWMEDR 307 (406) Q Consensus 231 ~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~---~~l~~~~~~~~~~ 307 (406) ..+. ...++++++.|+||.+++||+|+||+++++++++.+...+.....+.+...+.+.. ..... ..+..+. T Consensus 231 ~~~~----~~~~~~iv~~s~sK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 305 (398) T 3ele_A 231 PFVT----KYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVK-CQGATGD 305 (398) T ss_dssp CCGG----GTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTT-CTTCCCC T ss_pred CCCC----CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHH-HHHHHHH T ss_conf 3333----3456643540566311467555312468899998775442120344101201003778877776-5434567 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCH Q ss_conf 99999999999999972799455358873078776688788989999999986891896161026799985899850997 Q T0591 308 IARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDH 387 (406) Q Consensus 308 ~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~ 387 (406) +..++++|+.+.+.|.++ |+++..|+||||+|++++. .++.++++.| .++||.++||+.||. ++|||+||+.++ T Consensus 306 ~~~~~~~r~~l~~~L~~~-g~~~~~p~gg~~~~~~~~~--~~~~~~~~~l-~~~gV~v~pG~~Fg~--~~~vRls~~~~~ 379 (398) T 3ele_A 306 INAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALE--DDSNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYCVDR 379 (398) T ss_dssp HHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSS--SCHHHHHHHH-HTTTEECEESGGGTC--TTEEEEECCSCH T ss_pred HHHHHHHHHHHHHHHHHC-CCEEECCCCEEEEEEECCC--CCHHHHHHHH-HHCCEEEEECCCCCC--CCEEEEEECCCH T ss_conf 999999999999999866-9776368941899897999--9999999999-969999991775799--994999982899 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999856 Q T0591 388 EAAVAAARRIVTLVERYR 405 (406) Q Consensus 388 e~l~~al~rl~~~~~~~r 405 (406) |++++|++||++++++|+ T Consensus 380 e~i~~al~~l~~~l~~~~ 397 (398) T 3ele_A 380 EMIKHSMPAFEKIYKKYN 397 (398) T ss_dssp HHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999999857 No 36 >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, alternative splicing, mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 2vgz_A* Probab=100.00 E-value=0 Score=446.32 Aligned_cols=356 Identities=19% Similarity=0.253 Sum_probs=291.8 Q ss_pred CCCCEEECCCCCCCCC-CCHHHHHHHH--------HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CC---CC Q ss_conf 8983341567867887-8889999999--------99980878888788889889999999999864886---78---86 Q T0591 37 EGRPVDFSHGDVDAHE-PTPGAFDLFS--------AGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP---VD---AR 101 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~-p~~~~~~~~~--------~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~---~~---~~ 101 (406) .+..|+|+.|+||+.. |.+.....+. +.. .....+|++..|+++||++|++|+++.++.. ++ .. T Consensus 30 ~~~~I~l~~G~P~p~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 108 (425) T 2r2n_A 30 PKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEM-MKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQ 108 (425) T ss_dssp CTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHH-HHHHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTC T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99908899978894107879999999976776656652-14304889874609999999999999718887455878987 Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC----- Q ss_conf 707882487278999999997200101013105513899999829969998604466677666778899999850----- Q T0591 102 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK----- 176 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~----- 176 (406) ++|++|+|++++|.++++++++|||+|++++|+|+.|...++..|+++++|+++.. +.+++.++..+. T Consensus 109 ~~I~vt~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~vv~v~~~~~-------g~~~~~l~~~~~~~~~~ 181 (425) T 2r2n_A 109 MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVASDES-------GIVPDSLRDILSRWKPE 181 (425) T ss_dssp EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECEETT-------EECHHHHHHHHTTSCST T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCC-------CCCHHHHHHHHHCCCHH T ss_conf 85999138899999999997299898998668773147899863974789851444-------45667898876303767 Q ss_pred -------CCCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEE Q ss_conf -------25403421-5666432334437899999999863787578417502355688876522332102678689985 Q T0591 177 -------AGARVFLF-SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIM 248 (406) Q Consensus 177 -------~~~k~i~l-~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 248 (406) .+++++++ +|||||||.+++.+++++|+++|++||++||+||+|+++.|++...+.+... ...+++|+++ T Consensus 182 ~~~~~~~~~~~~l~~~p~p~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~ 259 (425) T 2r2n_A 182 DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSM--DVDGRVIRAD 259 (425) T ss_dssp TSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGG--CTTSCEEEEE T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHC--CCCCCEEEEC T ss_conf 88752238985999968999981715779999999999987345764477777751489999634421--4665348965 Q ss_pred ECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 040010463112114332589999999875203676124579999999856-----525899999999999999999997 Q T0591 249 GPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE-----APGWMEDRIARHQAIRDELLHVLR 323 (406) Q Consensus 249 S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~r~~l~~~L~ 323 (406) |+||.++ ||||+||+++++++++++.+.+.....+++++.|.++..++.. ...++++.+..|+++++.+.+.|. T Consensus 260 s~sk~~~-~GlRvG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (425) T 2r2n_A 260 SFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAAD 338 (425) T ss_dssp ESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCC-CCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6556668-823155553219999999999986325788089999999998633432002258999999999999999999 Q ss_pred HC-C-CCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC---CCCEEEEEEC-CCHHHHHHHHHHH Q ss_conf 27-9-945535887307877668878898999999998689189616102679---9985899850-9979999999999 Q T0591 324 GC-E-GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH---TADSVRLNFS-QDHEAAVAAARRI 397 (406) Q Consensus 324 ~~-~-g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~---~~~~iRis~~-~~~e~l~~al~rl 397 (406) +. + ++.+..|+||||+|+++++ ..++.+|+.++++++||.++||+.|+.. +++|+|+||+ .++|++++|++|| T Consensus 339 ~~~~~~~~~~~p~gg~f~~~~~~~-~~~~~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~~~Rls~a~~~~~~l~~a~~rL 417 (425) T 2r2n_A 339 KWLTGLAEWHVPAAGMFLWIKVKG-INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVL 417 (425) T ss_dssp HHCSSSEEECCCSBSSEEEEEETT-CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHH T ss_pred HHCCCCCEECCCCCEEEEEEECCC-CCCHHHHHHHHHHHCCEEEEECHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH T ss_conf 756798446079932699998999-9999999999999789999943552789888999899995869999999999999 Q ss_pred HHHHHHH Q ss_conf 9999985 Q T0591 398 VTLVERY 404 (406) Q Consensus 398 ~~~~~~~ 404 (406) +++++++ T Consensus 418 ~~~l~e~ 424 (425) T 2r2n_A 418 AQLIKES 424 (425) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999952 No 37 >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus HB27} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Probab=100.00 E-value=0 Score=431.01 Aligned_cols=353 Identities=20% Similarity=0.294 Sum_probs=301.7 Q ss_pred CCCCEEECCCCCCCCC-CCHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 8983341567867887-8889999999999808--788887888898899999999998648867886707882487278 Q T0591 37 EGRPVDFSHGDVDAHE-PTPGAFDLFSAGVQSG--GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~-p~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) .+..|||+.|+||+.. |++.+.+++.+.+.+. ...+|++..|.++||++||+|+ + +++ ++|++|+|++++ T Consensus 31 ~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~~ia~~~----~--~~~-~~I~it~G~~~a 103 (397) T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI----G--VRP-EEVLITTGSQQA 103 (397) T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH----T--SCG-GGEEEESHHHHH T ss_pred CCCCEECCCCCCCCHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHCC----C--CCH-HHEEEECCHHHH T ss_conf 999688999789911279899999999999717844237898737099999998204----9--777-898983786999 Q ss_pred HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC--CCEEEECCCCCCCC Q ss_conf 9999999972001010131055138999998299699986044666776667788999998502--54034215666432 Q T0591 114 LFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--GARVFLFSNPNNPA 191 (406) Q Consensus 114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~--~~k~i~l~~P~NPT 191 (406) +++++.++++|||+|++++|+|+.|...++..|++++++|++. ++.+++.++...+. ...+++++|||||| T Consensus 104 l~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~NPt 176 (397) T 2zyj_A 104 LDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-------EGPDLDALEEVLKRERPRFLYLIPSFQNPT 176 (397) T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-------TEECHHHHHHHHHHCCCSCEEECCBSCTTT T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCC-------CCCCHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 9999999628998787579973237999986497321221643-------222347899998506685899967852457 Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHH-CCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 3344378999999998637875784175023556888765223321-026786899850400104631121143325899 Q T0591 192 GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEA-AVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 192 G~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) |.+++.+++++++++|+++++++|+||+|.++.|++.+..++.... ....+++++++||||.++ ||+|+||+++++++ T Consensus 177 g~~~~~~~~~~~~~~~~~~~~~li~dd~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~GlRiG~~i~~~~~ 255 (397) T 2zyj_A 177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEA 255 (397) T ss_dssp CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHH T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCCCHHH T ss_conf 75566443211100012038740122232101368888875888644531362489616775778-88875614679999 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEECCCCCEEEEEECCCCC Q ss_conf 999998752036761245799999998565-2589999999999999999999727--9945535887307877668878 Q T0591 271 IARMEKLQAIVSLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGC--EGVFARTPQAGSYLFPRLPKLA 347 (406) Q Consensus 271 i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~--~g~~~~~p~gg~~~w~~~~~~~ 347 (406) ++.+.+.+.....+++.+.|.++..++.+. ..+++..+..++++++.+.+.|... .++++..|+||||+|+++|+ + T Consensus 256 i~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~f~~~~~~~-~ 334 (397) T 2zyj_A 256 LQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK-G 334 (397) T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST-T T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCC-C T ss_conf 999999985244678669999999999818711499999999999999999999756777155179952599998999-9 Q ss_pred CCHHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHCC Q ss_conf 898999999998689189616102679--9985899850-9979999999999999998569 Q T0591 348 VAPAEFVKILRLQAGVVVTPGTEFSPH--TADSVRLNFS-QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 348 ~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~~~iRis~~-~~~e~l~~al~rl~~~~~~~ra 406 (406) .++.++++.|+ ++||.++||+.|+.. +++|+|+||+ .++|++++|++||+++++++.| T Consensus 335 ~~~~~~~~~l~-~~gV~v~pg~~F~~~~~~~~~iRis~~~~~~e~l~~a~~rl~~~l~~lla 395 (397) T 2zyj_A 335 LSAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLLA 395 (397) T ss_dssp CCHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHH-HCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 89999999999-78969994466378999899899995769999999999999999999860 No 38 >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} Probab=100.00 E-value=0 Score=440.86 Aligned_cols=387 Identities=19% Similarity=0.254 Sum_probs=295.7 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHH-HHHHHHHHCC----CCCCCCCCCCCHH Q ss_conf 8871466661578998878899999630378983341567867887888999-9999999808----7888878888988 Q T0591 7 FKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAF-DLFSAGVQSG----GVQAYTEYRGDLG 81 (406) Q Consensus 7 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~-~~~~~~~~~~----~~~~Y~~~~G~~~ 81 (406) |+++|........+++...++ ... ...+..|+|+.|+|+..+++++.+ +++.+.+... ..++|++..|.++ T Consensus 4 ~s~~~~~~~~~~~i~~l~~~l---~~~-~~~p~~I~l~~G~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 79 (417) T 3g7q_A 4 FSLFGDKFTRHSGITRLMEDL---NDG-LRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTA 79 (417) T ss_dssp ------------CHHHHHHHH---HC------CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHH T ss_pred HHHHHHHHCCCCHHHHHHHHH---HHH-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHH T ss_conf 738988631564799999999---875-5899908999988999887589999999999866855666449899867299 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC---CHHHHHHHCCCHHHHHHHHHHCCEEEEEEE--CC Q ss_conf 9999999999864886788670788248727899999999720---010101310551389999982996999860--44 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVAR---GDKVAIVQPDYFANRKLVEFFEGEMVPVQL--DY 156 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~p---Gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~--~~ 156 (406) ||+++|+|+++++|+++++ ++|++|+|++++|++++++++++ ||.+.+..|+|+.|.......+...+.+.. .. T Consensus 80 lr~aia~~~~~~~~~~~~~-~~I~it~G~~~al~~~~~~l~~~~~~g~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (417) T 3g7q_A 80 LLNALAVLLRETLGWDIEP-QNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNI 158 (417) T ss_dssp HHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEE T ss_pred HHHHHHHHHHHHCCCCCCH-HEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCC T ss_conf 9999999999870999882-009992888999999999985445567741586137624999999815571531256640 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH Q ss_conf 66677666778899999850254034215666432334437899999999863787578417502355688876522332 Q T0591 157 VSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE 236 (406) Q Consensus 157 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 236 (406) ...+++++.++++.++..+++++|+++++|||||||.++|.+++++|+++|++||++||+||+|+.+ |.+....+.. T Consensus 159 ~~~~~~~~~~~~d~~~~~~~~~~~~i~l~~p~NPtG~~~s~e~~~~l~~~a~~~~~~vi~De~y~~~-~~~~~~~~~~-- 235 (417) T 3g7q_A 159 ELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEAR-- 235 (417) T ss_dssp EEEGGGEEEEECCGGGCCCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCC-- T ss_pred CCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCCCCCCC-- T ss_conf 2566546787988999867899739998899898675541688999988776436809998875542-3455323432-- Q ss_pred HCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHH-HHHHHHHH Q ss_conf 102678689985040010463112114332589999999875203676124579999999856525--899-99999999 Q T0591 237 AAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG--WME-DRIARHQA 313 (406) Q Consensus 237 ~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~--~~~-~~~~~~~~ 313 (406) ....+++++++|+|| +++||+|+||+++++++++.+.+.+...+.+++.+.|.++..++..... +.. ..+..+++ T Consensus 236 -~~~~~~vi~~~s~sk-~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 313 (417) T 3g7q_A 236 -PLWNPNIILCMSLSK-LGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQ 313 (417) T ss_dssp -CCCCTTEEEEEESGG-GTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHH T ss_pred -CCCCCCEEEECCCCC-CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH T ss_conf -113652456458777-778988668763899999999999866224431057889998862305777777776642101 Q ss_pred HHHHHHHHHHHC---CCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC-------CCCEEEEEE Q ss_conf 999999999727---9945535887307877668878898999999998689189616102679-------998589985 Q T0591 314 IRDELLHVLRGC---EGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH-------TADSVRLNF 383 (406) Q Consensus 314 ~r~~l~~~L~~~---~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-------~~~~iRis~ 383 (406) +++.+.+.+.+. .++.+..|+||||+|+++++...+... +..+++++||.++||+.|++. +++|+|+|| T Consensus 314 r~~~~~~~l~~~l~~~~~~~~~P~gg~f~~~~l~~~~~~~~~-~~~~l~~~gV~v~pG~~F~~~~~~~~~~~~~~~Ris~ 392 (417) T 3g7q_A 314 RVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTEL-LYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNY 392 (417) T ss_dssp HHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHH-HHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEES T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCHHH-HHHHHHHCCEEEEECHHHCCCCCCCCCCCCCEEEEEE T ss_conf 378999999985352682784788327999988999974999-9999996997998354426775566667799799995 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 099799999999999999985 Q T0591 384 SQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 384 ~~~~e~l~~al~rl~~~~~~~ 404 (406) +.++|++++|++||+++++|. T Consensus 393 ~~~~e~l~~~l~rL~~~l~~~ 413 (417) T 3g7q_A 393 VPEPDKIEAGVKILAEEIERA 413 (417) T ss_dssp CSCHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHH T ss_conf 599999999999999999999 No 39 >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Probab=100.00 E-value=0 Score=428.95 Aligned_cols=369 Identities=24% Similarity=0.347 Sum_probs=310.7 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 97446888714666615789988788999996303789833415678678878889999999999808788887888898 Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDL 80 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~ 80 (406) |..+.|+.++....+. .+.++++. ...|||++|+||+++ ++.+.+++.+++.. .++|++..|.+ T Consensus 1 ~~~~~r~~~~~~~~~~---------~~~~la~~----~~~i~l~~g~p~~~~-p~~v~~al~~~~~~--~~~Y~~~~G~~ 64 (381) T 1v2d_A 1 MRLHPRTEAAKESIFP---------RMSGLAQR----LGAVNLGQGFPSNPP-PPFLLEAVRRALGR--QDQYAPPAGLP 64 (381) T ss_dssp CCCCGGGGGC---CHH---------HHHHHHHH----HTCEECCCCSCSSCC-CHHHHHHHHHHTTT--SCSCCCTTCCH T ss_pred CCCCHHHHHCCCCHHH---------HHHHHHCC----CCCEEECCCCCCCCC-CHHHHHHHHHHHCC--CCCCCCCCCCH T ss_conf 9778234536899999---------99998654----997783388999988-99999999998524--77989985769 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCC Q ss_conf 89999999999864886788670788248727899999999720010101310551389999982996999860446667 Q T0591 81 GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSAD 160 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~ 160 (406) +||++||+|+ + +++ ++|++|+|+++++.+++.+++++||.|++++|+|..+...+...|.+++.++++. + T Consensus 65 ~lReaia~~~----~--~~~-~~I~it~G~~~ai~~~~~~l~~~gd~v~~~~P~~~~~~~~~~~~g~~~~~~~~~~---~ 134 (381) T 1v2d_A 65 ALREALAEEF----A--VEP-ESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDL---T 134 (381) T ss_dssp HHHHHHHHHH----T--SCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEE---E T ss_pred HHHHHHHHHH----C--CCH-HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCC---C T ss_conf 9999999874----9--994-6543145147888988874224456421358873010135775187556641264---2 Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf 76667788999998502540342156664323344378999999998637875784175023556888765223321026 Q T0591 161 ETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 240 (406) Q Consensus 161 ~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 240 (406) .+.+..|++..+....+.++++++||||||||.+++.+++++|+++|++||++||+||+|+.+.++.... .+. ... T Consensus 135 ~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~D~~~~~~~~~~~~~-~~~---~~~ 210 (381) T 1v2d_A 135 PEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPR-RLR---EFA 210 (381) T ss_dssp TTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC-CHH---HHC T ss_pred CCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCC-HHH---CCC T ss_conf 1334467889987405567615436988765444999999999999998398799720332220344442-011---023 Q ss_pred CCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH Q ss_conf 786899850400104631121143325899999998752036761245799999998565--258999999999999999 Q T0591 241 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDEL 318 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l 318 (406) .++++++.|+||.+++||+|+||+++++++++.+...+.....+++++.|.++..++... .+++++.+..++++++.+ T Consensus 211 ~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~l 290 (381) T 1v2d_A 211 PERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLL 290 (381) T ss_dssp TTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 34442573356556678664222224323444232332223333333332222222333222102456579999977789 Q ss_pred HHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEECCCHHHHHHHHHH Q ss_conf 99997279945535887307877668878898999999998689189616102679--9985899850997999999999 Q T0591 319 LHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH--TADSVRLNFSQDHEAAVAAARR 396 (406) Q Consensus 319 ~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~~~iRis~~~~~e~l~~al~r 396 (406) .+.+... |+++..|+||||+|+++|. .+. .+|++++||.++||+.|+.. +++|+||||+.++|++++|++| T Consensus 291 ~~~~~~~-g~~~~~p~g~~f~~~~l~~--~~~----~~ll~~~gV~v~pG~~F~~~~~~~~~iRis~~~~~e~l~~al~r 363 (381) T 1v2d_A 291 AGGLRAM-GLRVYVPEGTYFLMAELPG--WDA----FRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALER 363 (381) T ss_dssp HHHHHHT-TCCEECCSBSSEEEEECTT--CCH----HHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHH T ss_pred HHHHHHC-CCCCCCCCCCEEEEEECCC--HHH----HHHHHHCCEEEEECHHCCCCCCCCCEEEEEECCCHHHHHHHHHH T ss_conf 9986110-2543079832699996893--389----99999699999962330789998998999965999999999999 Q ss_pred HHHHHHHHCC Q ss_conf 9999998569 Q T0591 397 IVTLVERYRA 406 (406) Q Consensus 397 l~~~~~~~ra 406 (406) |++++++||. T Consensus 364 l~~~l~~~~~ 373 (381) T 1v2d_A 364 LGRVVNSPRE 373 (381) T ss_dssp HHHHC----- T ss_pred HHHHHHHHHH T ss_conf 9999997998 No 40 >3d6k_A Putative aminotransferase; APC82464, structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Probab=100.00 E-value=0 Score=423.62 Aligned_cols=359 Identities=18% Similarity=0.197 Sum_probs=275.6 Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCC--CHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 999996303789833415678678878--8899999999998---08788887888898899999999998648867886 Q T0591 27 LEALIRGAPIEGRPVDFSHGDVDAHEP--TPGAFDLFSAGVQ---SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDAR 101 (406) Q Consensus 27 ~~~~~~~~~~~~~~i~ls~G~pd~~~p--~~~~~~~~~~~~~---~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~ 101 (406) +.........++..|||+.|+|+...+ +....+....... .....+|++..|.++||++||+|+ | +++ T Consensus 21 ~~~~~~~l~~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~iA~~l----~--~~~- 93 (422) T 3d6k_A 21 VTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL----G--LPA- 93 (422) T ss_dssp HHHHHHHHHHTTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH----T--CCG- T ss_pred HHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHH----C--CCH- T ss_conf 999999998679957678879997557998358876446776524943207998030399999999887----8--284- Q ss_pred CEEEEECCCCHHHHH--HHHHH------------HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC Q ss_conf 707882487278999--99999------------7200101013105513899999829969998604466677666778 Q T0591 102 DGLIITPGTQGALFL--AVAAT------------VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLD 167 (406) Q Consensus 102 ~~I~it~G~~~~l~~--~~~~l------------~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d 167 (406) ++|++|+|++++++. +.+++ ++|||+|++++|+|+.|...++..|+++++||++. +++| T Consensus 94 ~~I~it~Gs~~~l~~~l~~~~~~~~~~~~~~~~~~~pgd~Vlv~~P~Y~~~~~~~~~~G~~~~~vp~d~-------~g~d 166 (422) T 3d6k_A 94 DLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTD-------EGPD 166 (422) T ss_dssp GGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-------TEEC T ss_pred HHEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCC-------CCCC T ss_conf 769982787999999999999741344333323379999899838983899999998699899984478-------8789 Q ss_pred HHHHHHHHCCCCEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCHH---H-HHCCC Q ss_conf 89999985025403421566--64323344378999999998637-875784175023556888765223---3-21026 Q T0591 168 LTGLEEAFKAGARVFLFSNP--NNPAGVVYSAEEIGQIAALAARY-GATVIADQLYSRLRYAGASYTHLR---A-EAAVD 240 (406) Q Consensus 168 ~~~l~~~~~~~~k~i~l~~P--~NPTG~~~s~~~l~~i~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~---~-~~~~~ 240 (406) +++++++++++++.+++++| |||||.++|.+++++|+++|++| +++||+||+|+++.|++..+.... . ..... T Consensus 167 ~~~le~~~~~~~~~~i~~~P~~~NPTG~v~s~~~~~~i~~~a~~~~~i~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 246 (422) T 3d6k_A 167 MGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGN 246 (422) T ss_dssp HHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTC T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHHHCCC T ss_conf 79999973058976999859999999771899999999998765598579963240254226667751445459872799 Q ss_pred CCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH Q ss_conf 786899850400104631121143325899999998752036761245799999998565---25899999999999999 Q T0591 241 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDE 317 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~ 317 (406) ++++|+++||||.|+ ||+|+||+++++++++.+.+.+.....+++++.|.++..++.+. +.++++.+..++++++. T Consensus 247 ~~~vi~~~S~SK~~~-~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (422) T 3d6k_A 247 PNRFWFMSSTSKITH-AGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFER 325 (422) T ss_dssp TTCEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 880899824411047-3021302248999999999998635778985999999999975411799999999999999999 Q ss_pred H----HHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE-ECCCCCC---CCCCEEEEEEC-CCHH Q ss_conf 9----999972799455358873078776688788989999999986891896-1610267---99985899850-9979 Q T0591 318 L----LHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVT-PGTEFSP---HTADSVRLNFS-QDHE 388 (406) Q Consensus 318 l----~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~-pG~~Fg~---~~~~~iRis~~-~~~e 388 (406) + .+.|.+.+++.+..|+||||+|+++|+ ..+.++++.+ .++||.++ ||+.|+. .+++|||+||+ .++| T Consensus 326 ~~~~l~~~l~~~~~~~~~~P~gg~fl~~~l~~--~~~~~~~~~l-~~~gv~~v~~g~~f~~~~~~~~~~iRlsf~~~~~e 402 (422) T 3d6k_A 326 VLEILDSRLSEYGVAKWTSPTGGYFISVDVVP--GTASRVVELA-KEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVA 402 (422) T ss_dssp HHHHHHHHHGGGTCEEECCCSBSSCEEEEEST--TCHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHH T ss_pred HHHHHHHHCCCCCCCEECCCCCCEEEEEECCC--CCHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCEEEEEECCCCHH T ss_conf 99999985400587144278820599998899--8599999999-98598898585313589888999899984889999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999998 Q T0591 389 AAVAAARRIVTLVER 403 (406) Q Consensus 389 ~l~~al~rl~~~~~~ 403 (406) ++++|++||+..++. T Consensus 403 ~l~~a~~~la~~v~~ 417 (422) T 3d6k_A 403 ELEVAMDGFATCVLM 417 (422) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 41 >3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Probab=100.00 E-value=0 Score=418.54 Aligned_cols=353 Identities=21% Similarity=0.255 Sum_probs=269.6 Q ss_pred CCCCCEEECCCCCCCCCC--CHHHHHHHHH-HHHCC--CCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC Q ss_conf 789833415678678878--8899999999-99808--78888-788889889999999999864886788670788248 Q T0591 36 IEGRPVDFSHGDVDAHEP--TPGAFDLFSA-GVQSG--GVQAY-TEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPG 109 (406) Q Consensus 36 ~~~~~i~ls~G~pd~~~p--~~~~~~~~~~-~~~~~--~~~~Y-~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G 109 (406) ..+..|||+.|+|+..+. +......... ..... ....| ++..|+|+||+++|+|+ | ++ .++|++|+| T Consensus 23 ~~~~~idls~G~P~~~~ld~~~~~~~~~~~~~~~~~~~d~~~y~g~~~G~pelR~~iA~~l----~--~~-~~~i~v~~g 95 (423) T 3ez1_A 23 ARGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL----D--VK-AENVLVWNN 95 (423) T ss_dssp HHTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT----T--SC-GGGEEECSS T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHCCCHHCCCCCCCCCCHHHHHHHHHHH----C--CC-HHHEEEECC T ss_conf 7599736777789910027763556065632112126222048899887099999999986----8--79-667998289 Q ss_pred CCHHHHHHHHHH-------------HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC Q ss_conf 727899999999-------------7200101013105513899999829969998604466677666778899999850 Q T0591 110 TQGALFLAVAAT-------------VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 176 (406) Q Consensus 110 ~~~~l~~~~~~l-------------~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~ 176 (406) ++++|..++.++ ++|||+|+++.|+|+.|...++.+|+++++||++.. ++|++.+++.++ T Consensus 96 as~~l~~~~~~~~~~~g~~~~~~~~~~~Gd~vl~p~P~y~~~~~~~~~~G~~~~~vp~~~~-------g~d~~~le~l~~ 168 (423) T 3ez1_A 96 SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD-------GPDVDAVERLAG 168 (423) T ss_dssp CHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-------EECHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCC-------CCCHHHHHHHHH T ss_conf 4599999999999854545566444799998999799838999999986998999613799-------999999999972 Q ss_pred C---CCEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCC---HHHH--HCCCCCCEEEE Q ss_conf 2---54034215666432334437899999999-86378757841750235568887652---2332--10267868998 Q T0591 177 A---GARVFLFSNPNNPAGVVYSAEEIGQIAAL-AARYGATVIADQLYSRLRYAGASYTH---LRAE--AAVDAENVVTI 247 (406) Q Consensus 177 ~---~~k~i~l~~P~NPTG~~~s~~~l~~i~~~-a~~~~~~ii~De~Y~~l~~~~~~~~~---~~~~--~~~~~~~~i~~ 247 (406) . .+++++++|||||||.+||.+++++|+++ |++|+++||+||+|.++.|.+..... +... .....+++|++ T Consensus 169 ~~~~~~~~~~~~~p~NPTG~v~s~e~l~~l~~l~a~~~~~~Ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 248 (423) T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423) T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE T ss_pred CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEE T ss_conf 79998299995989697281289999999999998628658999850155414777888815666653016998759998 Q ss_pred EECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC----HHHHHH----HHHHHHHHHHHH Q ss_conf 504001046311211433258999999987520367612457999999985652----589999----999999999999 Q T0591 248 MGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP----GWMEDR----IARHQAIRDELL 319 (406) Q Consensus 248 ~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~~~----~~~~~~~r~~l~ 319 (406) +|+||.+ +||||+||+++++++++.+.+.+....++++.+.|.++..++.+.. .++++. +..++.+++.+. T Consensus 249 ~s~sK~~-~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (423) T 3ez1_A 249 ASTSKIT-FAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLR 327 (423) T ss_dssp EESTTTS-CSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2564445-640010042506999999999975502589869999999999813333699999999999999999999999 Q ss_pred HHHHHCC-CCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC----CCCEEEEEEC-CCHHHHHHH Q ss_conf 9997279-945535887307877668878898999999998689189616102679----9985899850-997999999 Q T0591 320 HVLRGCE-GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH----TADSVRLNFS-QDHEAAVAA 393 (406) Q Consensus 320 ~~L~~~~-g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~----~~~~iRis~~-~~~e~l~~a 393 (406) +.|.+.. ++.+..|+||||+|+++++. .+.++. .++.++||.++||+.|++. .++|+||||+ .++|++++| T Consensus 328 ~~l~~~~~~~~~~~P~gg~f~w~~~~~~--~~~~~~-~~l~~~gV~v~PG~~F~~~g~~~~~~~iRls~a~~~~e~l~ea 404 (423) T 3ez1_A 328 AELGEGGEYATWTLPKGGYFISLDTAEP--VADRVV-KLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTA 404 (423) T ss_dssp HHHTTTTSSEEECCCSBSSCEEEEESSS--CHHHHH-HHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHH T ss_pred HHHHHCCCCEEEECCCCEEEEEEECCCC--HHHHHH-HHHHHCCEEEEECHHHCCCCCCCCCCEEEEEECCCCHHHHHHH T ss_conf 9987558860573698126999976976--799999-9999789599965230578878889989998488999999999 Q ss_pred HHHHHHHH----HHHCC Q ss_conf 99999999----98569 Q T0591 394 ARRIVTLV----ERYRA 406 (406) Q Consensus 394 l~rl~~~~----~~~ra 406 (406) ++||++++ +++|| T Consensus 405 i~rL~~~lr~a~~e~~~ 421 (423) T 3ez1_A 405 MQVVAACIRLATEEYRA 421 (423) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999853 No 42 >3f6t_A Aspartate aminotransferase; YP_194538.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Probab=100.00 E-value=0 Score=414.64 Aligned_cols=323 Identities=17% Similarity=0.221 Sum_probs=255.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---CCCCCCCCEEEEECCCCHHHHHHHHHH-----HHCCHHHHHHHCCCHHHHHHH Q ss_conf 888788889889999999999864---886788670788248727899999999-----720010101310551389999 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFT---GAPVDARDGLIITPGTQGALFLAVAAT-----VARGDKVAIVQPDYFANRKLV 142 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~---g~~~~~~~~I~it~G~~~~l~~~~~~l-----~~pGd~Vl~~~P~y~~~~~~~ 142 (406) .+||++.+...++|.|++++-++. +.....+++|++|+|+++||..+++++ ++|||+|++++|+|+.|...+ T Consensus 131 ~~YP~P~r~l~~~E~i~~~~l~~~~~~~~~~~~~~~i~~t~Ga~~ai~~~~~aL~~~~ll~pGD~Vli~~P~y~~y~~~~ 210 (533) T 3f6t_A 131 NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIP 210 (533) T ss_dssp CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSG T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHH T ss_conf 88989446578899999999998612489999827499938889999999999886136799995799599877799999 Q ss_pred HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCC Q ss_conf 98299699986044666776667788999998502540342156664323344378999999998637-87578417502 Q T0591 143 EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY-GATVIADQLYS 221 (406) Q Consensus 143 ~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~-~~~ii~De~Y~ 221 (406) ++.|+++++|++.. .++++|.+|+++|++++++++|++++||||||||.++|.+++++|+++|+++ +++||+||+|+ T Consensus 211 ~~~g~~~v~v~~~~--~~~~~~~~d~~~L~~~~~~~~k~i~i~nP~NPTG~~~s~e~l~~i~~~~~~~~~l~II~DevY~ 288 (533) T 3f6t_A 211 ELKDYELVEVDLHS--YEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG 288 (533) T ss_dssp GGGGSEEEEECCCE--ETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG T ss_pred HHCCCEEEEEECCC--CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 98699899972567--7555747899999973899981899818969889998999999999999977995595377764 Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHH--------------H----------- Q ss_conf 355688876522332102678689985040010463112114332589999999--------------8----------- Q T0591 222 RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARME--------------K----------- 276 (406) Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~--------------~----------- 276 (406) +|.|++.+. .. ..++++|+++||||.|++||||+||++++++.+.... + T Consensus 289 ~~~~~~~s~---~~---~~~~~~i~v~SfSK~f~~~G~RlG~i~~~~~~i~~~~~~~l~~~~~~~~~~~y~~~~~~P~~~ 362 (533) T 3f6t_A 289 AFVPNFKSI---YS---VVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKM 362 (533) T ss_dssp GGSTTCCCH---HH---HSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGC T ss_pred CCCCCCCCC---CH---HHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 112246763---11---333001113555544566211157542688999999998642788889999998872783369 Q ss_pred ------------HHHHCCCCHHHHHHHHHH-----HHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf ------------752036761245799999-----99856-----52589999999999999999999727994553588 Q T0591 277 ------------LQAIVSLRAAGYSQAVLR-----GWFDE-----APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 334 (406) Q Consensus 277 ------------~~~~~~~~~~~~~q~a~~-----~~l~~-----~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 334 (406) +...++.+.+++.|...+ .+++. .+.|++..++.+++|++.+.+.|... .....|+ T Consensus 363 ~~idrlvadsr~~~l~htagls~pqqv~~al~~~~~~l~~~~~~~~~~y~~~~r~~~~~R~~~L~~~L~~~--~~~~~p~ 440 (533) T 3f6t_A 363 KFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQAP--KDETDTN 440 (533) T ss_dssp CHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHTCC--CCCSTTB T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCC T ss_conf 99999876667778877640267178999999999999987334306899999999999999999985266--7776898 Q ss_pred CCEEEEEECCCC---------------CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHH Q ss_conf 730787766887---------------88989999999986891896161026799985899850-99799999999999 Q T0591 335 AGSYLFPRLPKL---------------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVAAARRIV 398 (406) Q Consensus 335 gg~~~w~~~~~~---------------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~ 398 (406) ||||+|+++... ..++.+|+.+|++++||+++||+.||. .++|+|+||+ .+++++.+++++|+ T Consensus 441 g~fY~~~dl~~~~~~~~g~~f~~~l~~~~~~~d~~~~Llee~gV~v~PG~~Fg~-~~g~iRiS~A~l~eed~~~i~~~i~ 519 (533) T 3f6t_A 441 THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVL 519 (533) T ss_dssp CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHH T ss_pred EEEEEEEEHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCEEEECCHHHCC-CCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 016998740663100245114421578999999999999868999978433489-9897999944599999999999999 Q ss_pred HHHHHH Q ss_conf 999985 Q T0591 399 TLVERY 404 (406) Q Consensus 399 ~~~~~~ 404 (406) +.+++| T Consensus 520 ~~l~e~ 525 (533) T 3f6t_A 520 ELLKEY 525 (533) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 43 >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Probab=100.00 E-value=0 Score=405.59 Aligned_cols=323 Identities=18% Similarity=0.219 Sum_probs=246.4 Q ss_pred CCCCCCCCCHHHHHHHHHH-HHHHCCCCCCC--CCEEEEECCCCHHHHHHHHHH-----HHCCHHHHHHHCCCHHHHHHH Q ss_conf 8887888898899999999-99864886788--670788248727899999999-----720010101310551389999 Q T0591 71 QAYTEYRGDLGIRDLLAPR-LAAFTGAPVDA--RDGLIITPGTQGALFLAVAAT-----VARGDKVAIVQPDYFANRKLV 142 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~-~~~~~g~~~~~--~~~I~it~G~~~~l~~~~~~l-----~~pGd~Vl~~~P~y~~~~~~~ 142 (406) .+||++.|..++||+|++. +.+..+....| +++|++|+|+++|+..++.++ ++|||+|++++|+|+.|...+ T Consensus 132 ~~Yp~p~~~l~~~e~i~~~yl~~~~~~~~~p~~~~~i~~T~Gat~Al~~if~~l~~~~ll~pGD~Vli~~P~y~~y~~~~ 211 (546) T 2zy4_A 132 CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP 211 (546) T ss_dssp CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH T ss_conf 88979986479999999999999717688989968599907879999999999988307298998998389848799999 Q ss_pred HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCC Q ss_conf 98299699986044666776667788999998502540342156664323344378999999998637--8757841750 Q T0591 143 EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY--GATVIADQLY 220 (406) Q Consensus 143 ~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~--~~~ii~De~Y 220 (406) ++.|+.+++|+++.. .+++|.+|.++++++.++++|++++||||||||.++|.+++++|+++|++| |++||+||+| T Consensus 212 ~l~g~~~~~v~~~~~--~~~~~~~~~~~l~~~~~~~~k~lil~nP~NPTG~~~s~~~l~~i~~i~~~~~~~l~II~DEvY 289 (546) T 2zy4_A 212 ELAQYALEEVAINAD--PSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY 289 (546) T ss_dssp HSTTSCCEEEEEECB--GGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTT T ss_pred HHCCCEEEEEEECCC--CCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 981984799984168--555889999999972899986899828979604348999999999877522898799978865 Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHH---------------------- Q ss_conf 2355688876522332102678689985040010463112114332589999999875---------------------- Q T0591 221 SRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ---------------------- 278 (406) Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~---------------------- 278 (406) ++|.+++.+ +.. ..++|+|+++||||.|++||||+||+++|++++......+ T Consensus 290 ~~~~~~~~s---~~~---~~~~~~I~v~S~SK~f~~~G~RlG~i~~~~~~I~~~~~~~l~~~~~~~l~~~y~~l~~~~~~ 363 (546) T 2zy4_A 290 GTFADDFQS---LFA---ICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRS 363 (546) T ss_dssp GGGSTTCCC---HHH---HCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGG T ss_pred CCCCCCCCC---HHH---CCCCCEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHH T ss_conf 445678876---434---17667799423612037856016999976899999999971532120178899886045203 Q ss_pred ---------------HHCCCCHHHHHH--HHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEE Q ss_conf ---------------203676124579--9999---99856525899999999999999999997279945535887307 Q T0591 279 ---------------AIVSLRAAGYSQ--AVLR---GWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSY 338 (406) Q Consensus 279 ---------------~~~~~~~~~~~q--~a~~---~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~ 338 (406) .....+.+++.| .++. .+++..+.+.+..+..+++|++.+.+.+ +++++. ..|.++|| T Consensus 364 ~~fi~rlvad~r~~aln~~aglstP~q~q~a~~~~~al~d~~~~y~~~~k~~~~rR~~~l~~~l-g~~~~~-~~~~~~fY 441 (546) T 2zy4_A 364 LKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYREL-GMPPLR-DENAVDYY 441 (546) T ss_dssp CCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGG-TSSCCC-CTTBCCSE T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC-CCCCEEEE T ss_conf 8999999998888887610303680899999999998622179999999999999999999857-998601-28981489 Q ss_pred EEEECCCC---------------CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH Q ss_conf 87766887---------------889899999999868918961610267999858998509-97999999999999999 Q T0591 339 LFPRLPKL---------------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVE 402 (406) Q Consensus 339 ~w~~~~~~---------------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~l~~al~rl~~~~~ 402 (406) +|++++.. ..++.+|+.+|++++||+++||+.||.. ++++|+||+. +++++.+..++|+++++ T Consensus 442 ~~~dl~~~~~~~~g~~f~~~l~~~~~~~~~~~~Llee~GV~vvPG~~FG~~-~~~vRiS~Anl~e~~~~~I~~~ir~~~~ 520 (546) T 2zy4_A 442 TLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSN-RPSGRASLANLNEYEYAAIGRALRKMAD 520 (546) T ss_dssp EEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCS-SCEEEEESSSSCHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCHHHCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 998750003444517788762258998999999998489999777445889-8979999487997899999999999999 Q ss_pred HH Q ss_conf 85 Q T0591 403 RY 404 (406) Q Consensus 403 ~~ 404 (406) +| T Consensus 521 e~ 522 (546) T 2zy4_A 521 EL 522 (546) T ss_dssp HH T ss_pred HH T ss_conf 99 No 44 >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* Probab=100.00 E-value=0 Score=408.93 Aligned_cols=345 Identities=13% Similarity=0.083 Sum_probs=281.6 Q ss_pred CCCCEEECCC---CCCCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC- Q ss_conf 8983341567---86788788-899999999998087888878888988999999999986488678867078824872- Q T0591 37 EGRPVDFSHG---DVDAHEPT-PGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQ- 111 (406) Q Consensus 37 ~~~~i~ls~G---~pd~~~p~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~- 111 (406) .+..|||++| +||..+|. +.+.++..+.+.++..++|++..|.++||++|++|+.++++...++ ++|+++.|++ T Consensus 27 ~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~p~~G~~~lReaia~~~~~~~~~~~~~-~~i~~~~~~~~ 105 (401) T 7aat_A 27 NSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS-GRYVTVQGISG 105 (401) T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEEEHH T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCEEEECCCHH T ss_conf 99958863777768889989988999999999638888999998878999999999986105887886-76899457177 Q ss_pred ----HHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---CCCCEEEEC Q ss_conf ----7899999999720010101310551389999982996999860446667766677889999985---025403421 Q T0591 112 ----GALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF---KAGARVFLF 184 (406) Q Consensus 112 ----~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~---~~~~k~i~l 184 (406) +++.+++.++++|||+|++++|+|+.|...+..+|+++++++++ +++++..+.+.+.+.. .++++++++ T Consensus 106 ~~~~~~~~~~~~~~~~~gd~Vlip~P~y~~y~~~~~~~G~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 181 (401) T 7aat_A 106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYY----DPKTCSLDFTGAMEDISKIPEKSIILLH 181 (401) T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECE----ETTTTEECHHHHHHHHTTSCTTCEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECC----HHHCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 899999999987417999989981698711789999859957996253----1430356999999998627898389997 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHH-HHHCCCCCCEEEEEECCHHCCCCCCCCHH Q ss_conf 56664323344378999999998637875784175023556888765223-32102678689985040010463112114 Q T0591 185 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLR-AEAAVDAENVVTIMGPSKTESLSGYRLGV 263 (406) Q Consensus 185 ~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~-~~~~~~~~~~i~~~S~SK~~~~~GlRiG~ 263 (406) +|||||||.++|.+++++|+++|++|+++||+||+|.+|.|++....... .......++++++.|+||.++++|||+|| T Consensus 182 ~~P~NPTG~v~s~e~~~~l~~~a~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~RiG~ 261 (401) T 7aat_A 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGA 261 (401) T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEE T ss_conf 89999958778999999999987646579999547113104886544677766642156413773144456676677489 Q ss_pred HHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHCC---C Q ss_conf 3325899999998752-------036761245799999998565------25899999999999999999997279---9 Q T0591 264 AFGSRAIIARMEKLQA-------IVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQAIRDELLHVLRGCE---G 327 (406) Q Consensus 264 ~~~~~~~i~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~r~~l~~~L~~~~---g 327 (406) ++++.++++.+.+++. ...++++...|.++...+.+. .+++++.+++|+++|+.+.+.|++.. + T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 341 (401) T 7aat_A 262 FTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHN 341 (401) T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 98358889999999999876311442412189999999861787889999999999999999999999999998479888 Q ss_pred CEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH Q ss_conf 455358873078776688788989999999986891896161026799985899850-997999999999999999 Q T0591 328 VFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 328 ~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~~~~~ 402 (406) +.+..|+||||+|+.++ .+++++|++|+||.++|| +||||+ .++++++...++|+++++ T Consensus 342 ~~~~~~~gG~F~~~~ls------~e~~~~Ll~e~gV~~~~g----------~Ris~a~~~~~~i~~~a~ai~~v~k 401 (401) T 7aat_A 342 WQHITDQIGMFCFTGLK------PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGYLAHAIHQVTK 401 (401) T ss_dssp CHHHHHCCSSEEECCCC------HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHHHHHHC T ss_pred CEEECCCCEEEEECCCC------HHHHHHHHHCCCEEECCC----------EEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 13767897699944989------999999998398996797----------0898445987779999999999749 No 45 >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Probab=100.00 E-value=0 Score=404.65 Aligned_cols=359 Identities=16% Similarity=0.102 Sum_probs=276.8 Q ss_pred HHHHHHHHCCCCCCEEECCC---CCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99999630378983341567---867887888999999999980--8788887888898899999999998648867886 Q T0591 27 LEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQS--GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDAR 101 (406) Q Consensus 27 ~~~~~~~~~~~~~~i~ls~G---~pd~~~p~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~ 101 (406) +.+..+..+ .++.||||+| +||..+|.+..++.+.+.+.. ...++|+|..|+++||++|++|+.+++|..++++ T Consensus 20 ~~~~~~~~~-~~~~InlsiG~~~d~~g~~p~~~~V~~A~~~i~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~ 98 (412) T 1ajs_A 20 LIADFREDP-DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEK 98 (412) T ss_dssp HHHHHHTCC-CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT T ss_pred HHHHHHCCC-CCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999983789-9993884078876988999888999999999973788788889977629999999999732258421246 Q ss_pred CEEEE-ECC-------CCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHH Q ss_conf 70788-248-------7278999999997200101013105513899999829969998604466677666778899999 Q T0591 102 DGLII-TPG-------TQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEE 173 (406) Q Consensus 102 ~~I~i-t~G-------~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~ 173 (406) ..+.+ |.| +++++...+.++++|||+|++++|+|+.|...+..+|++.+++++... +..+..|.+.+++ T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgd~Vl~~~P~y~~y~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ 175 (412) T 1ajs_A 99 RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD---TEKRGLDLQGFLS 175 (412) T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE---TTTTEECHHHHHH T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCC---CCCCCCCHHHHHH T ss_conf 5135227631777776999999877751389874895688872379999985981224213565---2346768899999 Q ss_pred H---HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHH-HHCCCCCCEEEEEE Q ss_conf 8---5025403421566643233443789999999986378757841750235568887652233-21026786899850 Q T0591 174 A---FKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA-EAAVDAENVVTIMG 249 (406) Q Consensus 174 ~---~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~-~~~~~~~~~i~~~S 249 (406) . .+++++++++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++.....+.. ......++++++.| T Consensus 176 ~~~~~~~~~~~il~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (412) T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255 (412) T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE T ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEE T ss_conf 98638788389995799998898899999999999998749349973234665348977770766656530661369961 Q ss_pred CCHHCCCCCCCCHHHHHHHHHHHHHHHH-------HHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHH Q ss_conf 4001046311211433258999999987-------52036761245799999998565------2589999999999999 Q T0591 250 PSKTESLSGYRLGVAFGSRAIIARMEKL-------QAIVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQAIRD 316 (406) Q Consensus 250 ~SK~~~~~GlRiG~~~~~~~~i~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~r~ 316 (406) +||.++++|||+||++++.++++.+... .....++++...|.++..++.+. ..++..++++|+++|+ T Consensus 256 ~sK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~ 335 (412) T 1ajs_A 256 FSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRS 335 (412) T ss_dssp CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 23103246787202433726799999999899887523506446899999999963978899999999999999999999 Q ss_pred HHHHHHHHCC---CCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHH Q ss_conf 9999997279---9455358873078776688788989999999986891896161026799985899850-99799999 Q T0591 317 ELLHVLRGCE---GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVA 392 (406) Q Consensus 317 ~l~~~L~~~~---g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~ 392 (406) .+.+.|++.. .|.+..|++|||+|+.+ +.+++++|++++||.++||. ||+|+ .++++++. T Consensus 336 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l------~~~~~~~L~~e~gV~~~pg~----------Ri~~a~~~~~~i~~ 399 (412) T 1ajs_A 336 ELRARLEALKTPGTWNHITDQIGMFSFTGL------NPKQVEYLINQKHIYLLPSG----------RINMCGLTTKNLDY 399 (412) T ss_dssp HHHHHHHHTTCSSCCHHHHHCCSSEEECCC------CHHHHHHHHHTTCEECCTTS----------EEEGGGCCTTTHHH T ss_pred HHHHHHHHHCCCCCEEEECCCCEEEEECCC------CHHHHHHHHHCCCEEECCCC----------EEEECCCCHHHHHH T ss_conf 999999983899871577799746984597------99999999981999981896----------48832698888999 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999999856 Q T0591 393 AARRIVTLVERYR 405 (406) Q Consensus 393 al~rl~~~~~~~r 405 (406) +.++|++++++.| T Consensus 400 la~~I~~~~~~~k 412 (412) T 1ajs_A 400 VATSIHEAVTKIQ 412 (412) T ss_dssp HHHHHHHHHHHCC T ss_pred HHHHHHHHHHHCC T ss_conf 9999999999609 No 46 >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Probab=100.00 E-value=0 Score=386.47 Aligned_cols=334 Identities=19% Similarity=0.220 Sum_probs=273.3 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 983341567867887888999999999980--878888788889889999999999864886788670788248727899 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQS--GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) ..+|+|+.++ ++..|+|.+++++.+++.+ ...++|++ .|..+||++||+|+++++|+.+++ ++|++|+|++++|+ T Consensus 30 ~~~i~l~~ne-np~~p~~~v~~a~~~~~~~~~~~~~~Yp~-~~~~~Lr~aia~~~~~~~g~~~~~-~~I~~t~G~~~~i~ 106 (369) T 3cq5_A 30 NVDIRLNTNE-NPYPPSEALVADLVATVDKIATELNRYPE-RDAVELRDELAAYITKQTGVAVTR-DNLWAANGSNEILQ 106 (369) T ss_dssp CCSEECSSCC-CCSCCCHHHHHHHHHHHHHHGGGTTSCCC-TTCHHHHHHHHHHHHHHHCCCCCG-GGEEEESHHHHHHH T ss_pred CCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCC-CEEEEECCHHHHHH T ss_conf 9967716899-99998999999999999754452176999-987999999999988975889883-14999059899999 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH-CCCCEEEECCCCCCCCCCC Q ss_conf 999999720010101310551389999982996999860446667766677889999985-0254034215666432334 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVV 194 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~P~NPTG~~ 194 (406) .+++++++|||+|++++|+|..|...++.+|.+.++++.+ .++.+|++++.+.+ .+++|++++||||||||.+ T Consensus 107 ~~~~~~~~pGd~vl~~~P~y~~~~~~~~~~g~~~v~v~~~------~~~~~d~~~~~~~~~~~~~~~v~l~~P~NPtG~~ 180 (369) T 3cq5_A 107 QLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG------ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDV 180 (369) T ss_dssp HHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC------TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCC T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCC------CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 9999972898989993897168999998659569993168------8878599999998524798489988999986542 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 43789999999986378757841750235568887652233210267868998504001046311211433258999999 Q T0591 195 YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARM 274 (406) Q Consensus 195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l 274 (406) ++.+++.+|++ .++.++|+||+|.+|.+++...+.+. ..++++|+++||||.|++||+|+||+++++++++++ T Consensus 181 ~~~~el~~l~~---~~~~~vI~Deay~~~~~~~~~~~~~~----~~~~~~iv~~S~SK~~~l~G~RvG~~~~~~~~i~~~ 253 (369) T 3cq5_A 181 TSLDDVERIIN---VAPGIVIVDEAYAEFSPSPSATTLLE----KYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAV 253 (369) T ss_dssp CCHHHHHHHHH---HCSSEEEEECTTGGGCCSCCGGGGTT----TCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHH T ss_pred CHHHHHHHHHH---HCCCEEEEECCCHHHCCCCCCCHHHH----HHCCCEEEECCCCHHHCCCCCEEEEEEECHHHHHHH T ss_conf 11579999999---72768999447076423434341567----624858995246143248874489998699999999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHH Q ss_conf 98752036761245799999998565258999999999999999999972799455358873078776688788989999 Q T0591 275 EKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFV 354 (406) Q Consensus 275 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~ 354 (406) .+++. ..+.+.+.|.++..++... .+..+.+..++++|+.+.+.|.++ |+.+..|+|+|++|.+.+ ++.+++ T Consensus 254 ~~~~~--~~~~~~~~q~a~~~al~~~-~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~f~~~~~~~----~~~~~~ 325 (369) T 3cq5_A 254 MLVRL--PYHLSALSQAAAIVALRHS-ADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNFVFFGDFS----DQHAAW 325 (369) T ss_dssp HTTSC--TTCSCHHHHHHHHHHHHTH-HHHHTHHHHHHHHHHHHHHHHHHH-TCEEECCSSSEEEEECCS----SHHHHH T ss_pred HHHCC--CCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCEEEEEEECC----CHHHHH T ss_conf 98648--7678869999999998680-999999999999999999999868-898807996799999579----899999 Q ss_pred HHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 999986891896161026799985899850997999999999999999 Q T0591 355 KILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 355 ~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~ 402 (406) +.| .++||+|.| |+ .++|+|+|++++ |+++..++.|+++++ T Consensus 326 ~~L-~~~gI~vr~---~~--~~~~lRis~~~~-ee~~~li~aL~~ilk 366 (369) T 3cq5_A 326 QAF-LDRGVLIRD---VG--IAGHLRTTIGVP-EENDAFLDAAAEIIK 366 (369) T ss_dssp HHH-HHTTEECBC---CS--CTTEEEEECCCH-HHHHHHHHHHHHHHT T ss_pred HHH-HHCCEEEEC---CC--CCCEEEEEECCH-HHHHHHHHHHHHHHH T ss_conf 999-979969966---89--999799995899-999999999999997 No 47 >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Probab=100.00 E-value=0 Score=392.12 Aligned_cols=363 Identities=13% Similarity=0.192 Sum_probs=284.8 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 97446888714666615789988788999996303789833415678678878889999999999808788887888898 Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDL 80 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~ 80 (406) |++.++.+++..- .|.-. ++++.+... ..+.|+|+.|+.. ..|+|.+++++.+++.+ .+.||+ .|.. T Consensus 2 ~~~~~~~~~~~~~-~~~~~-------~~~~~~~~g-~~~~i~l~~nenp-~~ppp~v~~al~~~~~~--~~~YP~-~g~~ 68 (365) T 3get_A 2 MKFNEFLNNLSNY-EPGKD-------IEVIAKEYG-VKEVIKLASNENP-FGTPPKAIECLRQNANK--AHLYPD-DSMI 68 (365) T ss_dssp CCCCGGGGGSCCC-CCCCC-------HHHHHHHTT-CSCCEECSSCCCT-TCSCHHHHHHHHHHGGG--TTSCCC-TTCH T ss_pred CCHHHHHHCCCCC-CCCCC-------HHHHHHHCC-CCCEEEECCCCCC-CCCCHHHHHHHHHHHHH--CCCCCC-CCHH T ss_conf 8752587569998-99989-------999999809-9988993398999-88999999999987764--076998-8889 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCC Q ss_conf 89999999999864886788670788248727899999999720010101310551389999982996999860446667 Q T0591 81 GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSAD 160 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~ 160 (406) +||++||+|+ ++ + .++|++|+|+++++.++++++++|||.|+++.|+|+.|...++.++.....++.. T Consensus 69 ~Lr~aiA~~~----~~--~-~~~i~it~G~~~~l~~~~~~~~~~~d~v~~~~p~y~~~~~~~~~~~~~~~~~~~~----- 136 (365) T 3get_A 69 ELKSTLAQKY----KV--Q-NENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI----- 136 (365) T ss_dssp HHHHHHHHHH----TC--C-GGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSS----- T ss_pred HHHHHHHHHH----CC--C-CCCEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCC----- T ss_conf 9999999997----88--9-4529985775899998887404999879976676505789999874201224454----- Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf 76667788999998502540342156664323344378999999998637875784175023556888765223321026 Q T0591 161 ETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 240 (406) Q Consensus 161 ~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 240 (406) .++..+.+.+.+...+++|++++||||||||.+++.+++++|+++|++++++++.|++|.++.+++............. T Consensus 137 -~~~~~~~~~~~~~~~~~~k~i~l~nP~NPtG~~~~~~~l~~l~~~~~~~~~~ii~D~~~~~~~~~~~~~~~s~~~~~~~ 215 (365) T 3get_A 137 -THNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE 215 (365) T ss_dssp -SCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH T ss_pred -CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCCCHHHHHCC T ss_conf -3345579999974546860899738999752100016899999854337379985303645313566565411111035 Q ss_pred CCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 78689985040010463112114332589999999875203676124579999999856525899999999999999999 Q T0591 241 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~ 320 (406) .+++|+++||||.|++||+|+||+++++++++.+.+++. .++.+.++|.++..++.+ ..+..+.++.++++|+.+.+ T Consensus 216 ~~nvIvi~S~SK~~gl~GlR~G~~i~~~~~~~~~~~~~~--~~~vs~~~~~~a~~al~~-~~~~~~~~~~~~~~r~~l~~ 292 (365) T 3get_A 216 FDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA--PFNVSNLALKAAVAAMDD-DEFTEKTLENNFSQMELYKE 292 (365) T ss_dssp CTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC--TTCSCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHH T ss_conf 797799803707742586444444599999999997317--655679999999999846-52557999999987899999 Q ss_pred HHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 99727994553588730787766887889899999999868918961610267999858998509979999999999999 Q T0591 321 VLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTL 400 (406) Q Consensus 321 ~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~ 400 (406) .|+.. |+++..+ +|.|+|+.++. .++.+|+++|+ ++||.|+||+.|| .+|+||++++ +++.+..++.|+++ T Consensus 293 ~l~~~-g~~v~~~-~~~f~~~~~~~--~~~~~~~~~L~-~~gV~v~p~~~fg---~~~iRis~~~-~ee~~~~l~al~~i 363 (365) T 3get_A 293 FAKKH-NIKIIDS-YTNFITYFFDE--KNSTDLSEKLL-KKGIIIRNLKSYG---LNAIRITIGT-SYENEKFFTEFDKI 363 (365) T ss_dssp HHHHT-TCEECCC-SSSEEEEECSS--SCHHHHHHHHH-TTTEECEECGGGT---CSEEEEECCC-HHHHHHHHHHHHHH T ss_pred HHHHC-CCEECCC-CCCEEEEECCC--CCHHHHHHHHH-HCCEEEEECCCCC---CCEEEEEECC-HHHHHHHHHHHHHH T ss_conf 99858-9878889-87789998899--99999999998-5893998278789---1969998599-99999999999997 Q ss_pred H Q ss_conf 9 Q T0591 401 V 401 (406) Q Consensus 401 ~ 401 (406) + T Consensus 364 l 364 (365) T 3get_A 364 L 364 (365) T ss_dssp H T ss_pred H T ss_conf 3 No 48 >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Probab=100.00 E-value=0 Score=383.94 Aligned_cols=335 Identities=14% Similarity=0.210 Sum_probs=271.6 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 98334156786788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) .+.||||.+.+.+ .|+|.+++++.+++.. ...|++. +..+||++||+|+ |+ ++ ++|++|+|+++++.++ T Consensus 26 ~~lid~s~n~Np~-g~p~~~~~al~~~~~~--~~~Yp~~-~~~~Lr~~ia~~~----~~--~~-~~I~~t~G~~~~~~~~ 94 (361) T 3ftb_A 26 RELLDYSSNINPL-GIPKSFLNNIDEGIKN--LGVYPDV-NYRRLNKSIENYL----KL--KD-IGIVLGNGASEIIELS 94 (361) T ss_dssp --CEETTCCCCTT-CSCHHHHTTHHHHHHG--GGSCCCT-TCHHHHHHHHHHH----TC--CS-CEEEEESSHHHHHHHH T ss_pred CCEEECCCCCCCC-CCCHHHHHHHHHHHHH--CCCCCCC-CHHHHHHHHHHHH----CC--CH-HEEEECCCHHHHHHHH T ss_conf 9669878999987-8799999999999876--0369997-6999999999986----94--85-5199847299999999 Q ss_pred HHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 99997200101013105513899999829969998604466677666778899999850254034215666432334437 Q T0591 118 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 118 ~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) + .+||+|+++.|+|+.|...++..|.+++.++++ .+|.+|+++++++++ ++++++++|||||||.+++. T Consensus 95 ~----~~~d~Vlv~~P~y~~~~~~~~~~g~~~v~~~~~------~~~~~d~~~l~~~~~-~~~~~ii~nP~NPtG~~~~~ 163 (361) T 3ftb_A 95 I----SLFEKILIIVPSYAEYEINAKKHGVSVVFSYLD------ENMCIDYEDIISKID-DVDSVIIGNPNNPNGGLINK 163 (361) T ss_dssp H----TTCSEEEEEESCCTHHHHHHHHTTCEEEEEECC------TTSCCCHHHHHHHTT-TCSEEEEETTBTTTTBCCCH T ss_pred H----HHCCEEEEECCCCHHHHHHHHHCCCEEEEEECC------CCCCCCHHHHHHHCC-CCCEEEECCCCCCCCCCCCH T ss_conf 9----858989990797478999999879989997459------888989999986266-76689857998986867699 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHH-HHHHH Q ss_conf 89999999986378757841750235568887652233210267868998504001046311211433258999-99998 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAII-ARMEK 276 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i-~~l~~ 276 (406) +++++|+++|++|+++||+||+|.+|.+++.. +.+... ...+++|+++||||.|++||+|+||++++++.+ +.++. T Consensus 164 ~~l~~i~~~a~~~~~~vi~Deay~~~~~~~~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~~v~~~~~i~~~~~~ 240 (361) T 3ftb_A 164 EKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSS-SFVGEI--KNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKA 240 (361) T ss_dssp HHHHHHHHHHHHHTCEEEEECSSGGGTCCTTS-SSGGGT--TTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCEEEEEECCHHHHCCCCCC-CCHHHH--CCCCCEEEECCCHHHHCCCCCCCEEEEECCHHHHHHHHH T ss_conf 99999999876348499996010442456565-502220--267855997345164247876504799782999999998 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHH Q ss_conf 75203676124579999999856525899999999999999999997279945535887307877668878898999999 Q T0591 277 LQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKI 356 (406) Q Consensus 277 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~ 356 (406) .. ..++++.++|.++..++.+ ..++++.++.++++|+++.+.|.+++++....|++|+|+|+++++ .++.+++++ T Consensus 241 ~~--~~~~~~~~~~~aa~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~fv~~~~~~--~~~~~~~~~ 315 (361) T 3ftb_A 241 KQ--NPWNINCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLEN--ISGEKLYDS 315 (361) T ss_dssp TS--CTTCSCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSEEEEEESS--SCHHHHHHH T ss_pred HC--CCCCCCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCC--CCHHHHHHH T ss_conf 50--8889659999999998538-899999999999999999999971899752579988699998999--999999999 Q ss_pred HHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 998689189616102679998589985099799999999999999985 Q T0591 357 LRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 357 Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) |+ ++||.|+||+.|+..+++|+|+|+++ +|++++.++.|+++++++ T Consensus 316 L~-~~gI~v~~~~~f~~~~~~~iRis~~t-~ee~~~li~aL~~i~~~L 361 (361) T 3ftb_A 316 LL-KEDIVIRRCCNFIGLDDSFVRFAIKD-EKKNTKFLRALKGVENNL 361 (361) T ss_dssp HH-TTTEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHHHTC T ss_pred HH-HCCEEEEECCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHHHHCC T ss_conf 99-78939995755688899979997289-999999999999999519 No 49 >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal aldimine, schiff base; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Probab=100.00 E-value=0 Score=391.68 Aligned_cols=344 Identities=17% Similarity=0.132 Sum_probs=269.3 Q ss_pred CCCCEEECCC---CCCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC Q ss_conf 8983341567---86788788899999999998--087888878888988999999999986488678867078824872 Q T0591 37 EGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQ--SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQ 111 (406) Q Consensus 37 ~~~~i~ls~G---~pd~~~p~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~ 111 (406) .+..|||++| ++|..+|....++.+.+.+. ....++|+|..|+++||++|++|+.++++..+++ ++|+++.|.+ T Consensus 25 ~~~ki~l~iG~~~~~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~elr~aia~~~~~~~~~~~~~-~~v~~~~~~~ 103 (397) T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ-QRVATIQTLG 103 (397) T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEESH T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCEEEECCCH T ss_conf 989488507777288899888789999999997186556778996668999999999985136976676-7589846643 Q ss_pred HH----HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC---CCCEEEEC Q ss_conf 78----999999997200101013105513899999829969998604466677666778899999850---25403421 Q T0591 112 GA----LFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLF 184 (406) Q Consensus 112 ~~----l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~l 184 (406) ++ +.+++..+++|||.|++++|+|+.|...++.+|++++++|++. ++.+.+|++++.+.+. ++++++++ T Consensus 104 ~~~~~~~~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (397) T 3fsl_A 104 GSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYD----EATNGVRFNDLLATLKTLQAGSIVLLH 179 (397) T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEE----TTTTEECHHHHHHHHTTCCTTCEEEEC T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEEEEECCC----CCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 4778999999988628998358648988304799998599799983524----445676626667787617887089997 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHH Q ss_conf 56664323344378999999998637875784175023556888765223321026786899850400104631121143 Q T0591 185 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA 264 (406) Q Consensus 185 ~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~ 264 (406) +|||||||.+++.+++++|+++|++|+++||+||+|.+|.|++...++.........+++++++|+||.|++||+|+||+ T Consensus 180 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~ 259 (397) T 3fsl_A 180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGL 259 (397) T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEE T ss_pred CCCCCCCCHHHCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEECCCCCEEEE T ss_conf 89979887410756999999987307988983202022236886553144433341564113204651342357866899 Q ss_pred HHHHHHHHHHHHH-------HHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHCC---CC Q ss_conf 3258999999987-------52036761245799999998565------25899999999999999999997279---94 Q T0591 265 FGSRAIIARMEKL-------QAIVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQAIRDELLHVLRGCE---GV 328 (406) Q Consensus 265 ~~~~~~i~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~r~~l~~~L~~~~---g~ 328 (406) +++.++++...+. ......+++...|.++..++.+. .++..+.++++..+|+.+.+.|.... +| T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 339 (397) T 3fsl_A 260 SVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNF 339 (397) T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC T ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 71617789999999999987651346772799999998608989999999999999999999999999888985899876 Q ss_pred EEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHH Q ss_conf 55358873078776688788989999999986891896161026799985899850-99799999999999999 Q T0591 329 FARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVAAARRIVTLV 401 (406) Q Consensus 329 ~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~~~~ 401 (406) .+..|+||||+|+.+ +.+++++|++|+||.+.|| .||||+ .++++++...++|++++ T Consensus 340 ~~~~~~~G~F~~~~l------s~e~~~~L~~e~gV~l~~g----------~Ri~~a~l~~~~i~~l~~ai~~v~ 397 (397) T 3fsl_A 340 DYLLNQRGMFSYTGL------SAAQVDRLREEFGVYLIAS----------GRMCVAGLNTANVQRVAKAFAAVM 397 (397) T ss_dssp THHHHCCSSEEECCC------CHHHHHHHHHTTCEECCTT----------CEEEGGGCCTTTHHHHHHHHHHHC T ss_pred EEECCCCCEEEEECC------CHHHHHHHHHHCCEEECCC----------CEEEECCCCHHHHHHHHHHHHHHC T ss_conf 996689832885182------9999999999599992697----------279845799889999999999869 No 50 >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Probab=100.00 E-value=0 Score=386.85 Aligned_cols=334 Identities=19% Similarity=0.250 Sum_probs=276.0 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 83341567867887888999999999980878888788889889999999999864886788670788248727899999 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 118 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~ 118 (406) ..|+|+.++.. ..|+|.+.+++.+++.+...+.|++. |.++||++||+|+. .+ ++++|++|+|+++++.+++ T Consensus 31 ~~i~L~~nenp-~~pp~~~~~al~~~~~~~~~~~YP~~-~~~~Lr~aiA~~~~----~~--~~~~i~vt~Ga~~~i~~~~ 102 (367) T 3euc_A 31 GLVKLDAMENP-YRLPPALRSELAARLGEVALNRYPVP-SSEALRAKLKEVMQ----VP--AGMEVLLGNGSDEIISMLA 102 (367) T ss_dssp TCEECCSSCCC-CCCCHHHHHHHHHHHHHHHTTCSCCC-CHHHHHHHHHHHHT----CC--TTCEEEEEEHHHHHHHHHH T ss_pred CCEEEECCCCC-CCCCHHHHHHHHHHHCCHHHCCCCCC-CHHHHHHHHHHHHC----CC--CCCCEEECCCCCHHHHHHH T ss_conf 81894278999-99899999999997332211479998-68999999999868----99--6651696688614468887 Q ss_pred HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHH-HCCCCEEEECCCCCCCCCCCCCH Q ss_conf 99972001010131055138999998299699986044666776667788999998-50254034215666432334437 Q T0591 119 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA-FKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 119 ~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~-~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) +++++|||.|++++|+|+.|...++..|++++.|+++. ++..+.+.+.+. ...+++++++||||||||.+++. T Consensus 103 ~~~~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~------~~~~~~~~~~~~~~~~~~~~i~i~~P~NPtG~~~~~ 176 (367) T 3euc_A 103 LAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA------DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDA 176 (367) T ss_dssp HHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT------TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCH T ss_pred HHHCCCCCEEEECCCCCCCCCHHHHCCCCEEEEECCCC------CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCH T ss_conf 52145662488557620011023322786168611244------444321100011014554211245555454644688 Q ss_pred HHHHHHHHHHHHC--CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8999999998637--87578417502355688876522332102678689985040010463112114332589999999 Q T0591 198 EEIGQIAALAARY--GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARME 275 (406) Q Consensus 198 ~~l~~i~~~a~~~--~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~ 275 (406) +++++++++|+++ +.+|++||+|.++.+++.. . .....+++++++|+|| |++||||+||+++++++++.+. T Consensus 177 ~~l~~l~~~~~~~~~~~~vi~De~y~~~~~~~~~--~----~~~~~~~~i~~~s~sK-~~l~GlRiG~~i~~~~~i~~l~ 249 (367) T 3euc_A 177 ADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWM--S----RLTDFGNLLVMRTVSK-LGLAGIRLGYVAGDPQWLEQLD 249 (367) T ss_dssp HHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSG--G----GGGTCTTEEEEEECCC-TTSCSCCEEEEEECHHHHHHHG T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC--C----CCCCCCCCCCCCCCCC-CCCCCCCCCEEECCHHHHHHHH T ss_conf 8852011123223233332023443202333121--0----1112334322346665-6661200111653799999999 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHH Q ss_conf 87520367612457999999985652589999999999999999999727994553588730787766887889899999 Q T0591 276 KLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVK 355 (406) Q Consensus 276 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~ 355 (406) +++.... .+.+.|.++..++.. ..++.+.++.++++|+.+.+.|.+..|+.+. |++|+|+|++++ ++.++++ T Consensus 250 ~~~~~~~--~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-p~~~~fl~~~~~----~~~~~~~ 321 (367) T 3euc_A 250 KVRPPYN--VNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP----DAAQTFD 321 (367) T ss_dssp GGCCSSC--CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS----CHHHHHH T ss_pred HHCCCCC--CCCCCCHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEC-CCCCEEEEEECC----CHHHHHH T ss_conf 7336553--312220123443203-3222220134566666789999974997888-998618999689----9999999 Q ss_pred HHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 999868918961610267999858998509979999999999999998 Q T0591 356 ILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 356 ~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~ 403 (406) +|+ ++||.++||+.|++.+++|+|+++++ +++.+..++.|++++++ T Consensus 322 ~L~-~~gi~v~~~~~f~~~~~~~iRis~~~-~~e~~~li~al~~~Lke 367 (367) T 3euc_A 322 RLL-ARKVLIKNVSKMHPLLANCLRVTVST-PEENAQFLEAFAASLQD 367 (367) T ss_dssp HHH-TTTEECEECGGGCGGGTTEEEEECCC-HHHHHHHHHHHHHHTCC T ss_pred HHH-HCCCEEEECCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHCC T ss_conf 999-78928996676788898989998389-89999999999998378 No 51 >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ... Probab=100.00 E-value=0 Score=396.12 Aligned_cols=344 Identities=16% Similarity=0.134 Sum_probs=273.2 Q ss_pred CCCEEECCC---CCCCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC-CH Q ss_conf 983341567---86788788-89999999999808788887888898899999999998648867886707882487-27 Q T0591 38 GRPVDFSHG---DVDAHEPT-PGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGT-QG 112 (406) Q Consensus 38 ~~~i~ls~G---~pd~~~p~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~-~~ 112 (406) +..|||++| ++|...|. +.+.++..+.+.+...++|+|..|+++||+++++|+.++++....++..++++.|+ +. T Consensus 26 ~~~inL~iG~~~d~~~~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (396) T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG 105 (396) T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH T ss_conf 99688227787688899998889999999996289889889877789999999999974579877887399954747899 Q ss_pred H--HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC---CCCEEEECCCC Q ss_conf 8--999999997200101013105513899999829969998604466677666778899999850---25403421566 Q T0591 113 A--LFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNP 187 (406) Q Consensus 113 ~--l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P 187 (406) + +..++.+++++||+|++++|+|+.|...++.+|++++.+++. .++++.+|.+.+++... ++++++++||| T Consensus 106 ~~~l~~~~~~~~~~gd~v~~p~P~y~~y~~~~~~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p 181 (396) T 2q7w_A 106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYY----DAENHTLDFDALINSLNEAQAGDVVLFHGCC 181 (396) T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECE----ETTTTEECHHHHHHHHTTCCTTCEEEEECSS T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCC----CCCCCCCCHHHHHHHHHHCCCCCEEEEECCC T ss_conf 999999999742898579993778763899999869978973055----2125577888999999854789789997999 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH Q ss_conf 64323344378999999998637875784175023556888765223321026786899850400104631121143325 Q T0591 188 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 188 ~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~ 267 (406) |||||.++|.+++++|+++|++|+++||+||+|.+|.|++....+.........++++++.|+||.|+++|||+||++++ T Consensus 182 ~NPTG~~~s~~~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RvG~~~~~ 261 (396) T 2q7w_A 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLV 261 (396) T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCEECCCCCCCEEEEEC T ss_conf 99998777989998888762366138998716563447986652687755650665168731631000225770258964 Q ss_pred HHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHCCC---CEEE Q ss_conf 89999999875-------2036761245799999998565------258999999999999999999972799---4553 Q T0591 268 RAIIARMEKLQ-------AIVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQAIRDELLHVLRGCEG---VFAR 331 (406) Q Consensus 268 ~~~i~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~r~~l~~~L~~~~g---~~~~ 331 (406) +++++...+.+ .....+++...|.++..++.+. .++++.++++++++|+.+.+.|++... +.+. T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~i 341 (396) T 2q7w_A 262 AADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI 341 (396) T ss_dssp CSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 26799999999999987503234332688999998606867789999999999999999999999999983898773056 Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHH Q ss_conf 58873078776688788989999999986891896161026799985899850-99799999999999999 Q T0591 332 TPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVAAARRIVTLV 401 (406) Q Consensus 332 ~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~~~~ 401 (406) .|++|||+|+.++ .+++.+|++++||.++||+ |+|++ .++++++..+++|++++ T Consensus 342 ~~~~G~F~~~~ls------~e~~~~L~~e~~V~~~~g~----------Ri~~agl~~~~i~~~~~ai~~V~ 396 (396) T 2q7w_A 342 IKQNGMFSFSGLT------KEQVLRLREEFGVYAVASG----------RVNVAGMTPDNMAPLCEAIVAVL 396 (396) T ss_dssp HHCCSSEEECCCC------HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHHHHHHHHHHHC T ss_pred CCCCEEEEEECCC------HHHHHHHHHHCCEEECCCC----------EEEECCCCHHHHHHHHHHHHHHC T ss_conf 4897189984949------9999999982899967998----------79963799888999999999869 No 52 >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Probab=100.00 E-value=0 Score=389.01 Aligned_cols=344 Identities=15% Similarity=0.142 Sum_probs=274.7 Q ss_pred CCCCEEECCC---CCCCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 8983341567---86788788-8999999999980878888788889889999999999864886788670788248727 Q T0591 37 EGRPVDFSHG---DVDAHEPT-PGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 37 ~~~~i~ls~G---~pd~~~p~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .+..|||++| ++|..+|. |.+.+++.+.+.+...++|+|..|.++||++|++++.++++....++..++++.|++. T Consensus 25 ~~~kInl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (394) T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104 (394) T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 99978850787748889989877999999998518878888997778999999999985545533355431046718899 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHH---HCCCCEEEECCCCCC Q ss_conf 89999999972001010131055138999998299699986044666776667788999998---502540342156664 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA---FKAGARVFLFSNPNN 189 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~---~~~~~k~i~l~~P~N 189 (406) ++.+.+.++++|||+|++++|+|+.|...++.+|++++.+|++. +.++..+.+++.+. ..+++++++++|||| T Consensus 105 ~l~~~~~~~~~pgd~Vli~~P~y~~y~~~~~~~G~~~~~vp~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~N 180 (394) T 2ay1_A 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFD----AETRGVDFEGMKADLAAAKKGDMVLLHGCCHN 180 (394) T ss_dssp HHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEE----TTTTEECHHHHHHHHHTCCTTCEEEEESSSCT T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCEEEEECCCC----CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 99998888737850799956532120799998599799953542----10345430456777664036836998258889 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHH Q ss_conf 32334437899999999863787578417502355688876522332102678689985040010463112114332589 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRA 269 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~ 269 (406) |||.++|.+++++|+++|++|+++||+||+|.+|.|++....+..........+++.+.|+||+++++|||+||+.++.. T Consensus 181 PTG~~~s~e~~~~l~~~a~~~~i~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~g~r~g~~~~~~~ 260 (394) T 2ay1_A 181 PTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCA 260 (394) T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECS T ss_pred CCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHH T ss_conf 88877999999999998752527624660654555688655216654332045431020343441024554212003547 Q ss_pred -------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHCC---CCEEECC Q ss_conf -------9999998752036761245799999998565------25899999999999999999997279---9455358 Q T0591 270 -------IIARMEKLQAIVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQAIRDELLHVLRGCE---GVFARTP 333 (406) Q Consensus 270 -------~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~r~~l~~~L~~~~---g~~~~~p 333 (406) +...+.........+.+...|.++..++.+. .++++..+++++++|+.+.+.|+++. .|.+..| T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~ 340 (394) T 2ay1_A 261 DAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE 340 (394) T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 79999999877766402222455178888887630577899999999999999999999999999998589886468779 Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHH Q ss_conf 873078776688788989999999986891896161026799985899850-9979999999999999 Q T0591 334 QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVAAARRIVTL 400 (406) Q Consensus 334 ~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~~~ 400 (406) +||||+|+.++ .+++++|++|+||.++||+ ||||+ .++++++...++|.++ T Consensus 341 ~gG~F~~~~ls------~e~~~~L~~e~~V~~~~g~----------Ris~a~l~~~~i~~l~~ai~~v 392 (394) T 2ay1_A 341 HRGMFSRLGAT------PEQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIPILARAIIEV 392 (394) T ss_dssp CCSSEEECCCC------HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHHHHHHHHHHH T ss_pred CCEEEEECCCC------HHHHHHHHHHCCEEECCCC----------EEEECCCCHHHHHHHHHHHHHH T ss_conf 97069842959------9999999984998847985----------7995569988899999999982 No 53 >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase, cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Probab=100.00 E-value=0 Score=380.13 Aligned_cols=336 Identities=13% Similarity=0.184 Sum_probs=273.0 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 83341567867887888999999999980878888788889889999999999864886788670788248727899999 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 118 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~ 118 (406) +.||||.|.+.+ .|++.+.+++.+++.. .++||+ .|.++||++||+++ |+ + .++|++|+|+++++.+++ T Consensus 25 ~iidls~n~np~-~~p~~~~~a~~~~~~~--~~~YP~-~~~~~Lr~aiA~~~----~v--~-~~~I~i~~gs~~~~~~~~ 93 (364) T 1lc5_A 25 QLLDFSANINPL-GMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHH----QV--P-ASWILAGNGETESIFTVA 93 (364) T ss_dssp GSEECSSCCCTT-CCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHH----TS--C-GGGEEEESSHHHHHHHHH T ss_pred CEEECCCCCCCC-CCCHHHHHHHHHHHHH--HCCCCC-CCHHHHHHHHHHHH----CC--C-HHEEEECCCHHHHHHHHH T ss_conf 158856999998-8899999999987777--327999-98499999999986----97--8-550998865999999985 Q ss_pred HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH Q ss_conf 99972001010131055138999998299699986044666776667788999998502540342156664323344378 Q T0591 119 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 198 (406) Q Consensus 119 ~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~ 198 (406) .++ +|+.++++.|+|+.|.......+++++.+++.. +++|.++ +.+++..++++|++++||||||||.+++.+ T Consensus 94 ~~~--~~~~~~i~~p~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~v~l~nPnNPtG~~~~~~ 166 (364) T 1lc5_A 94 SGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLRE----ADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERP 166 (364) T ss_dssp HHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCG----GGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHH T ss_pred HCC--CCCCEEEECCCCHHHHHHHHHCCCEEEEEECCH----HHCCCCH-HHHHHHCCCCCCEEEEECCCCCCCCCCHHH T ss_conf 114--899679967984478999998298357985655----5178981-999974789975899838989866434477 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH-HHHHHHH Q ss_conf 999999998637875784175023556888765223321026786899850400104631121143325899-9999987 Q T0591 199 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI-IARMEKL 277 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~-i~~l~~~ 277 (406) ++++|+++|++|++++|+||+|.+|.+++...... ....+++++++||||.|++||+|+||++++++. ++.+++. T Consensus 167 ~l~~l~~~a~~~~~~ii~De~y~~f~~~~~~~~~~----~~~~~~vi~~~S~SK~~gl~GlR~G~~i~~~~~~~~~~~~~ 242 (364) T 1lc5_A 167 LLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA----LKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQ 242 (364) T ss_dssp HHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG----CTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCH----HHCCCCCEEEECCCHHHCCCCCCEEEEEECCHHHHHHHHHH T ss_conf 87777877631520699746655334565332202----32177523883344453378652389997859999999985 Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 52036761245799999998565258999999999999999999972799455358873078776688788989999999 Q T0591 278 QAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKIL 357 (406) Q Consensus 278 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~L 357 (406) + ..++.+.++|.++..++++ ..++.+.++.++++++.+.+.|.+++|+.+ .|++|+|+|++++. ++.+++++| T Consensus 243 ~--~~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~p~~~~f~~~~~~~---~~~~~~~~L 315 (364) T 1lc5_A 243 Q--MPWSVNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQLPLLTV-YPGRANYLLLRCER---EDIDLQRRL 315 (364) T ss_dssp S--CTTCSCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE-CCCSSSEEEEEESC---TTCCHHHHH T ss_pred H--CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-CCCCCEEEEEECCC---CHHHHHHHH T ss_conf 1--8731008999999999609-899999999999998999999985699888-89987799997899---999999999 Q ss_pred HHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 986891896161026799985899850997999999999999999856 Q T0591 358 RLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 358 l~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) + ++||+++||+.|+..+++|+|||+++ +++++..++.|+++++... T Consensus 316 ~-~~gi~v~~~~~f~~~~~~~~Ris~~~-~ee~~~~l~~L~~il~~~~ 361 (364) T 1lc5_A 316 L-TQRILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGIA 361 (364) T ss_dssp H-TTTEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC---- T ss_pred H-HCCCEEEECCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHCCC T ss_conf 9-78919984765789999989998389-9999999999999986678 No 54 >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Probab=100.00 E-value=0 Score=390.99 Aligned_cols=348 Identities=16% Similarity=0.144 Sum_probs=271.4 Q ss_pred CCCCEEECCC---CCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-EEEEECCC Q ss_conf 8983341567---867887888999999999980--87888878888988999999999986488678867-07882487 Q T0591 37 EGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQS--GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARD-GLIITPGT 110 (406) Q Consensus 37 ~~~~i~ls~G---~pd~~~p~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~-~I~it~G~ 110 (406) .+..|||++| ++|..+|.+..++.+.+.+.. ...++|+|..|.++||+++++|+.++++.....++ .+++|.|+ T Consensus 28 ~~~kInL~iG~y~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~ 107 (412) T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSG 107 (412) T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCC T ss_conf 98968830777748889999878999999999727665788999756099999999998400276533221100014530 Q ss_pred CHHHHHH--HHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC---CCCEEEECC Q ss_conf 2789999--99997200101013105513899999829969998604466677666778899999850---254034215 Q T0591 111 QGALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFS 185 (406) Q Consensus 111 ~~~l~~~--~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~ 185 (406) +.++.++ +.++++|||.|++++|+|+.|...+..+|++++.+++.. ++.+..+.+.+.+.+. +++++++++ T Consensus 108 ~~~~~~~~~~~~~~~pgd~Vlip~P~y~~y~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 183 (412) T 1yaa_A 108 TGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWA----NETKSLDLNGFLNAIQKAPEGSIFVLHS 183 (412) T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEE----TTTTEECHHHHHHHHHHSCTTCEEEEEC T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCC----CCCCCCCCHHHHHHHCCCCCCEEEEEEC T ss_conf 568999999874248999885578776551789997599531354333----4554422101232211478753899943 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHH----HHHCCCCCCEEEEEECCHHCCCCCCCC Q ss_conf 6664323344378999999998637875784175023556888765223----321026786899850400104631121 Q T0591 186 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLR----AEAAVDAENVVTIMGPSKTESLSGYRL 261 (406) Q Consensus 186 ~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~GlRi 261 (406) |||||||.+++.+++++|+++|++++++||+||+|.+|.|++....... .......+++|++.|+||.|++||||+ T Consensus 184 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri 263 (412) T 1yaa_A 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV 263 (412) T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCE T ss_conf 78998376489999999999986459146225024444138855641443232320135776299971477655777760 Q ss_pred HHHHHHHHHHHHHHHHH-----------HHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 14332589999999875-----------2036761245799999998565------258999999999999999999972 Q T0591 262 GVAFGSRAIIARMEKLQ-----------AIVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQAIRDELLHVLRG 324 (406) Q Consensus 262 G~~~~~~~~i~~l~~~~-----------~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~r~~l~~~L~~ 324 (406) ||++++++++..+..++ +....+.+...|.++..++.+. .+++.+++++|+++|+.+.+.|++ T Consensus 264 G~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 343 (412) T 1yaa_A 264 GCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK 343 (412) T ss_dssp EEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78996433667788899888776789999886347749999999851787789999999999999999999999999998 Q ss_pred CCC---CEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHH Q ss_conf 799---455358873078776688788989999999986891896161026799985899850-9979999999999999 Q T0591 325 CEG---VFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHEAAVAAARRIVTL 400 (406) Q Consensus 325 ~~g---~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~l~~al~rl~~~ 400 (406) +.. |.+..|+||||+|+.+ +.+++++|++++||.++||+ |++++ .++++++...+.|.++ T Consensus 344 ~g~~~~~~~~~~~gG~F~~~~l------s~e~~~~L~~~~~V~~~~g~----------Ris~~g~~~~~i~~la~ai~~v 407 (412) T 1yaa_A 344 LGTPGNWDHIVNQCGMFSFTGL------TPQMVKRLEETHAVYLVASG----------RASIAGLNQGNVEYVAKAIDEV 407 (412) T ss_dssp HTCSSCCTHHHHCCSSEEECCC------CHHHHHHHHHHHCEECCTTS----------EEEGGGCCTTTHHHHHHHHHHH T ss_pred HCCCCCCCEECCCCEEEEECCC------CHHHHHHHHHHCCEEECCCC----------EEEECCCCHHHHHHHHHHHHHH T ss_conf 4898886256899617983398------99999999985988977988----------7985139888899999999999 Q ss_pred HHHH Q ss_conf 9985 Q T0591 401 VERY 404 (406) Q Consensus 401 ~~~~ 404 (406) ++.| T Consensus 408 ~k~~ 411 (412) T 1yaa_A 408 VRFY 411 (412) T ss_dssp HHHC T ss_pred HHHH T ss_conf 9851 No 55 >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Probab=100.00 E-value=0 Score=385.58 Aligned_cols=331 Identities=18% Similarity=0.256 Sum_probs=266.3 Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 78983341567867887888999999999980878888788889889999999999864886788670788248727899 Q T0591 36 IEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 36 ~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) ...+.||||.+.+... |++.+.+++.+.+.. ...||+.. ..+||++||++ +|+ ++ ++|++|+|++++|. T Consensus 13 ~~~~i~dfs~n~~~~~-~p~~~~~~l~~~~~~--~~~YPd~~-~~~Lr~aiA~~----~~v--~~-d~I~it~G~~e~i~ 81 (350) T 3fkd_A 13 LSSEIVNFSTTVWTDG-DKDHLEKHLVENLNC--IRHYPEPD-AGTLRQMLAKR----NSV--DN-NAILVTNGPTAAFY 81 (350) T ss_dssp ---CCEECSCCSCCCS-CCHHHHHHHHHTGGG--GGSCCCTT-CHHHHHHHHHH----TTC--CG-GGEEEESHHHHHHH T ss_pred CCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHH--HHCCCCCC-HHHHHHHHHHH----HCC--CH-HEEEECCCHHHHHH T ss_conf 8676646678899999-999999999998899--74299998-89999999999----788--72-41998457999999 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC Q ss_conf 99999972001010131055138999998299699986044666776667788999998502540342156664323344 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVY 195 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~ 195 (406) ++++++ +||+|++++|+|+.|...++..|.+.+.++++.. +.++..+++|++++||||||||.++ T Consensus 82 ~~~~~~--~gd~vlv~~P~Y~~y~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~~i~l~nPnNPtG~~~ 146 (350) T 3fkd_A 82 QIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-------------IGEADFSNMDFCWLCNPNNPDGRLL 146 (350) T ss_dssp HHHHHT--TTCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-------------GGGSCCTTCSEEEEESSCTTTCCCC T ss_pred HHHHHH--CCCCEEEECCCHHHHHHHHHHHCCCCEEECCHHH-------------HHHHCCCCCCEEEECCCCCCCCCCC T ss_conf 999985--8997799678628899999982886413356888-------------9874234898899838999986644 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 37899999999863787578417502355688876522332102678689985040010463112114332589999999 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARME 275 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~ 275 (406) +.+++++|++ +.++..+|+||+|.++.++... .... ....+++|+++||||.+++||+|+||+++++++++++. T Consensus 147 s~e~~~~i~~--~~~~~~vi~De~y~~f~~~~~~--~~~~--~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~li~~l~ 220 (350) T 3fkd_A 147 QRTEILRLLN--DHPDTTFVLDQSYVSFTTEEVI--RPAD--IKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVA 220 (350) T ss_dssp CHHHHHHHHH--HCTTSEEEEECTTTTSCSSCCC--CGGG--GTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHH T ss_pred CCCHHHHHHH--HCCCCEEEEEEEEECCCCCCCC--CCHH--HCCCCCEEEECCCCCCCCCCHHCEEEECCCHHHHHHHH T ss_conf 4421557999--7467628866532101346666--6044--30457647840453211686221455128999999999 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHH Q ss_conf 87520367612457999999985652589999999999999999999727994553588730787766887889899999 Q T0591 276 KLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVK 355 (406) Q Consensus 276 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~ 355 (406) +++. .++.+.++|.++..++.+.+.+....++ +.++|+.+.+.|.+..|+.+. |++|+|+|++++. .++.+++. T Consensus 221 ~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~r~~~~~~l~~~~g~~v~-p~~~~f~~~~~~~--~~~~~~~~ 294 (350) T 3fkd_A 221 AFST--PWAVNALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKK--GTAAELKK 294 (350) T ss_dssp TTCC--TTCSCHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESS--SCHHHHHH T ss_pred HHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCEEC-CCCCEEEEEECCC--CCHHHHHH T ss_conf 9669--7663899999999975222999999999-999999999997404896888-9985599998999--99999999 Q ss_pred HHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99986891896161026799985899850997999999999999999856 Q T0591 356 ILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 356 ~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) .+++++||+|+||+.|+...++|+|||+++ +|++++.+++|+++++||| T Consensus 295 ~~L~~~gV~v~pg~~f~~~~~~~iRis~~~-~ee~~~~i~aL~~~l~k~~ 343 (350) T 3fkd_A 295 YMLEEYNMLIRDASNFRGLDESYVRITTQR-PAQNQLFIKALETFLEKYE 343 (350) T ss_dssp HHHHTTCEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHHTC-- T ss_pred HHHHHCCEEEEECCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHHHC T ss_conf 999869999997875788898989998379-9999999999999999838 No 56 >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} Probab=100.00 E-value=0 Score=374.47 Aligned_cols=359 Identities=14% Similarity=0.182 Sum_probs=281.8 Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 97446888714666615789988788999996303789833415678678878889999999999808788887888898 Q T0591 1 MSIEAKFKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDL 80 (406) Q Consensus 1 m~i~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~ 80 (406) |..+.+.+++. |+. .+..+.++.+... .++.|+||.++. +..|+|.+.+++++.+. ....||+ .|.. T Consensus 4 ~~~~~~~~~~~----~y~----~~~~~~~~~~~~g-~~~~i~l~~Nen-p~gp~p~v~~al~~~~~--~~~~YP~-~~~~ 70 (363) T 3ffh_A 4 MKWKKSLAGLS----SYK----PGKREEEVMAELG-LTKITKLSSNEN-PLGTSKKVAAIQANSSV--ETEIYPD-GWAS 70 (363) T ss_dssp CCCCGGGTTCC----C--------CHHHHHHHTTT-CSCCEECSSCSC-TTCCCHHHHHHHHTCBS--CCCBC-----CH T ss_pred CCCCHHHHCCC----CCC----CCCCHHHHHHHCC-CCCEEEEECCCC-CCCCCHHHHHHHHHHHH--HHCCCCC-CCHH T ss_conf 76446862899----999----9999899998749-998699548999-98888999999996467--5166999-8889 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCC Q ss_conf 89999999999864886788670788248727899999999720010101310551389999982996999860446667 Q T0591 81 GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSAD 160 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~ 160 (406) +||++||+++ |+ + +++|++|+|+++++..++++++.+||.|+++.|+|+.|...++..|.+++.++++. T Consensus 71 ~Lr~~iA~~~----~i--~-~d~I~~t~Ga~~~i~~~~~~l~~~gd~vi~~~P~y~~~~~~a~~~g~~~~~~~~~~---- 139 (363) T 3ffh_A 71 SLRKEVADFY----QL--E-EEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ---- 139 (363) T ss_dssp HHHHHHHHHH----TC--C-GGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT---- T ss_pred HHHHHHHHHH----CC--C-HHHEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCC---- T ss_conf 9999999997----85--8-79999828788999999999708999899836860477899986597201320134---- Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf 76667788999998502540342156664323344378999999998637875784175023556888765223321026 Q T0591 161 ETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 240 (406) Q Consensus 161 ~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 240 (406) ++..+++++++.+++++|++++||||||||.+++.+++.++++.|++++++++.|+.|.++.+++... ... ... T Consensus 140 --~~~~~~~~l~~~i~~~~~lv~l~nPnNPtG~~~~~~el~~l~~~~~~~~~~iidD~~~~~~~~~~~~~--~~~--~~~ 213 (363) T 3ffh_A 140 --DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKH--EKL--VRT 213 (363) T ss_dssp --TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCC--GGG--GGT T ss_pred --CCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCCC--HHH--HHC T ss_conf --54205899997567798389977998998710448999999997334838999640267642577642--123--303 Q ss_pred CCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 78689985040010463112114332589999999875203676124579999999856525899999999999999999 Q T0591 241 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~ 320 (406) .+++|+++||||.|++||+|+||+++++++++.+.+... .++++++.|.++..++.+ ..+..+.++.+.+.++.+.. T Consensus 214 ~~~~i~~~s~SK~~gl~G~R~G~~~~~~~~~~~l~~~~~--~~~~~~~~q~a~~~al~~-~~~~~~~~~~~~~~~~~~~~ 290 (363) T 3ffh_A 214 YKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PFNTTSIGQKLAIEAIKD-QAFIGECRTSNANGIKQYEA 290 (363) T ss_dssp CTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SCCCBHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH T ss_conf 674576225653214665444234599999999997408--744456999999999859-39999999999998888999 Q ss_pred HHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 99727994553588730787766887889899999999868918961610267999858998509979999999999999 Q T0591 321 VLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTL 400 (406) Q Consensus 321 ~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~ 400 (406) .+.+++|+++. |++|+|+|++++ .++.++++.| .++||.|+||+.||. ++|+|+|+++ +|+++..++.|+++ T Consensus 291 ~~~~l~g~~~~-ps~a~fv~~~~~---~~~~~l~~~L-~~~gI~vr~g~~fg~--~~~iRis~~~-~ee~~~~i~al~~i 362 (363) T 3ffh_A 291 FAKRFEKVKLY-PANGNFVLIDLG---IEAGTIFSYL-EKNGYITRSGAALGF--PTAVRITIGK-EEDNSAVIALLEKL 362 (363) T ss_dssp HHHHCTTCEEC-CCCSSEEEEECS---SCHHHHHHHH-HHTTEECEETTTTTC--TTEEEEECCC-HHHHHHHHHHHHHH T ss_pred HHHHCCCCEEC-CCCCEEEEEECC---CCHHHHHHHH-HHCCEEEECCCCCCC--CCEEEEEECC-HHHHHHHHHHHHHH T ss_conf 99856997677-898528999689---9999999999-809979976887899--9989997089-99999999999986 No 57 >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 1.61A {Geobacter metallireducens gs-15} Probab=100.00 E-value=0 Score=362.12 Aligned_cols=326 Identities=21% Similarity=0.288 Sum_probs=258.9 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 9833415678678878889999999999808--78888788889889999999999864886788670788248727899 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSG--GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) ...|||+.|++++ .|+|.+++++.+++... ..+.| |..|..+||++||+++ |+ + +++|++|+|+++++. T Consensus 26 ~~~i~L~~nenp~-~p~p~v~~a~~~~l~~~~~~~~~Y-p~~~~~~Lr~aiA~~~----~~--~-~~~I~it~Ga~~ai~ 96 (360) T 3hdo_A 26 ASWIKLNTNENPY-PPSPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELY----GF--D-PSWIIMANGSDEVLN 96 (360) T ss_dssp TTSEECSSCCCSS-CCCHHHHHHHHHHHTTTCGGGGSC-CCSSCHHHHHHHHHHH----TC--C-GGGEEEESSHHHHHH T ss_pred CCCEECCCCCCCC-CCCHHHHHHHHHHHHCCHHHHCCC-CCCCHHHHHHHHHHHH----CC--C-HHHCCCCCCCHHHHH T ss_conf 9907868989899-999999999999975064542209-9876799999999885----33--1-653145554167888 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC Q ss_conf 99999972001010131055138999998299699986044666776667788999998502540342156664323344 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVY 195 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~ 195 (406) .++.+++++||.|++++|+|+.|...+..+|.+++.++.+... .+... ..+.++|++++||||||||.++ T Consensus 97 ~~~~~~~~~g~~V~~~~P~y~~~~~~~~~~g~~~~~~~~~~~~----~~~~~------~~~~~~kli~l~nP~NPtG~~~ 166 (360) T 3hdo_A 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDF----RIAGF------PERYEGKVFFLTTPNAPLGPSF 166 (360) T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTS----SBTTC------CSSBCSSEEEEESSCTTTCCCC T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC----HHHHH------HHHHCCCEEECCCCCCCCCCCC T ss_conf 8987424579668614330168889999729753234322111----11565------5400343221001367876768 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 37899999999863787578417502355688876522332102678689985040010463112114332589999999 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARME 275 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~ 275 (406) +.+++ .++|++++.++|+||+|.+|.++.. .... ...+++|+++||||.|++||+|+||+++++++++.+. T Consensus 167 ~~~ei---~~la~~~~~~ii~De~~~~~~~~~~----~~~~--~~~~~vi~~~S~SK~~gl~GlR~G~i~~~~~~~~~l~ 237 (360) T 3hdo_A 167 PLEYI---DELARRCAGMLVLDETYAEFAESNA----LELV--RRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALD 237 (360) T ss_dssp CHHHH---HHHHHHBSSEEEEECTTGGGSSCCC----THHH--HHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHH T ss_pred CHHHH---HHHHHHCCCCCHHHHHHHHHCCCCC----CCCH--HHCCCEEEECCCCHHHCCCCCCCHHHHCCCHHHHHHH T ss_conf 89999---9999876864013455554223320----0243--2249789986483885087342113204604677765 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHH Q ss_conf 87520367612457999999985652589999999999999999999727994553588730787766887889899999 Q T0591 276 KLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVK 355 (406) Q Consensus 276 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~ 355 (406) ..+... +.+...|.++.+++.+ .++..+.++.++++|+.+.+.|.+. |+++. |++|+|+|+++++ .++.++++ T Consensus 238 ~~~~~~--~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~l~~~-g~~~~-p~~~~fl~~~~~~--~d~~~~~~ 310 (360) T 3hdo_A 238 KIRDHY--NLDRLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPD--RDGKRVYD 310 (360) T ss_dssp HHSCSC--CSCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTT--CCHHHHHH T ss_pred HHCCCC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCEEEEEECCC--CCHHHHHH T ss_conf 302232--0000122333333442-3567888879999989988888856-97589-8988289898999--98999999 Q ss_pred HHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 99986891896161026799985899850997999999999999999 Q T0591 356 ILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 356 ~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~ 402 (406) .|+ ++||.|+|++.|+ .++|+|+|+++ +++++..+++|+++.+ T Consensus 311 ~L~-~~gI~v~~~~~~~--~~~~lRis~~~-~ee~~~l~~aL~~i~e 353 (360) T 3hdo_A 311 GLY-ARKVLVRHFSDPL--LAHGMRISIGT-REEMEQTLAALKEIGE 353 (360) T ss_dssp HHH-HTTEECBCCCSTT--TTTSEEEECCC-HHHHHHHHHHHHHHHC T ss_pred HHH-HCCCEEECCCCCC--CCCEEEEEECC-HHHHHHHHHHHHHHHC T ss_conf 999-7892897088888--89989998389-9999999999999978 No 58 >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Probab=100.00 E-value=0 Score=378.54 Aligned_cols=337 Identities=16% Similarity=0.162 Sum_probs=251.7 Q ss_pred HHHHHHHH-HCCCCCCEEECCCCCCCCCCCHHHH-HHHHHHHHCCCC--CCC-CCCCCC-----HHHHHHHHHHHHHHCC Q ss_conf 89999963-0378983341567867887888999-999999980878--888-788889-----8899999999998648 Q T0591 26 GLEALIRG-APIEGRPVDFSHGDVDAHEPTPGAF-DLFSAGVQSGGV--QAY-TEYRGD-----LGIRDLLAPRLAAFTG 95 (406) Q Consensus 26 ~~~~~~~~-~~~~~~~i~ls~G~pd~~~p~~~~~-~~~~~~~~~~~~--~~Y-~~~~G~-----~~Lr~aia~~~~~~~g 95 (406) +.+.+.+. .+.....|||+.|+|++.+ |... ++..+++...+. .+| ++..|. ++||++|++++....+ T Consensus 9 k~~~~~~k~~~~~d~vi~l~~G~P~~~~--p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~el~~~i~~~~~~~~~ 86 (391) T 3bwn_A 9 KPEKISNKNIPMSDFVVNLDHGDPTAYE--EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGN 86 (391) T ss_dssp ---------CCTTTSCEECSSCCCGGGH--HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCS T ss_pred CHHHHHCCCCCCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 6898834789999870789997999998--57899999999736365665657898875544679999999999987469 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHH----HHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH Q ss_conf 8678867078824872789999999972001010----131055138999998299699986044666776667788999 Q T0591 96 APVDARDGLIITPGTQGALFLAVAATVARGDKVA----IVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGL 171 (406) Q Consensus 96 ~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl----~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l 171 (406) ..+++ ++|++|+|++++|+++++++++|||.|+ ++.|+|+.|.......+.+...... |. T Consensus 87 ~~~~~-~~I~vt~Ga~~~i~~~~~~l~~~gd~v~~~~~~~~p~y~~~~~~~~~~~~~~~~~~~------------d~--- 150 (391) T 3bwn_A 87 AATED-RYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG------------DA--- 150 (391) T ss_dssp BCCSS-SEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE------------ES--- T ss_pred CCCCC-CEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC------------CH--- T ss_conf 88996-979989888999999999985389974410452654088777677514476757382------------88--- Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECC Q ss_conf 99850254034215666432334437899999999863787578417502355688876522332102678689985040 Q T0591 172 EEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 251 (406) Q Consensus 172 ~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~S 251 (406) ++..++++|++++||||||||.++ ++|+++|++++++||+||+|.++.|.... ...+++|+++||| T Consensus 151 ~~~~~~~~k~i~l~~P~NPTG~~~-----~~i~~~a~~~~~~vi~De~y~~~~~~~~~---------~~~~~~I~i~S~S 216 (391) T 3bwn_A 151 WGFDKKGPYIELVTSPNNPDGTIR-----ETVVNRPDDDEAKVIHDFAYYWPHYTPIT---------RRQDHDIMLFTFS 216 (391) T ss_dssp TTCCCCSCEEEEEESSCTTTCCCC-----CCCC-----CCCEEEEECTTCSTTTSCCC---------CCBCCSEEEEEHH T ss_pred HHHCCCCCEEEEECCCCCCCCHHH-----HHHHHHHHHCCCEEEECCCEECCCHHHCC---------CCCCCEEEEECCC T ss_conf 961778976999889989986589-----99999867419679955824223010023---------4668889994583 Q ss_pred HHCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 010463112114332-58999999987520367612457999999985----------6525899999999999999999 Q T0591 252 KTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFD----------EAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 252 K~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~----------~~~~~~~~~~~~~~~~r~~l~~ 320 (406) |.|++||||+||+++ ++.+.+.+.........+++.+.|.++...+. ..+.+++..+..++++++.+.+ T Consensus 217 K~~~l~GlRiG~~v~~~~~l~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~ 296 (391) T 3bwn_A 217 KITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLRE 296 (391) T ss_dssp HHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 01017440579999782999999998432056775899999999998868999876665799999999999999999999 Q ss_pred HHHHCCCCEEEC--CC-----------CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCH Q ss_conf 997279945535--88-----------73078776688788989999999986891896161026799985899850997 Q T0591 321 VLRGCEGVFART--PQ-----------AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDH 387 (406) Q Consensus 321 ~L~~~~g~~~~~--p~-----------gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~ 387 (406) .|.+.+++.+.. |+ .+.|.|++..+ +.+ +.+++.++||+++||+.||. +++|+||||+.++ T Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~-~~~~L~~~gV~v~pG~~Fg~-~~~~vRis~~~~~ 370 (391) T 3bwn_A 297 VVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----ETD-LVSELRRHKVMSRAGERCGS-DKKHVRVSMLSRE 370 (391) T ss_dssp HHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS----SCC-HHHHHHHTTEECEEGGGGTC-CTTEEEEESCSCH T ss_pred HHHHCCCCEECCCCCCEEEEEEEECCCCCCHHCCCCCC----HHH-HHHHHHHCCEEEEECCCCCC-CCCEEEEEECCCH T ss_conf 99876993113558860589875248864200047898----999-99999859999983400399-9698999970889 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q T0591 388 EAAVAAARRIVTL 400 (406) Q Consensus 388 e~l~~al~rl~~~ 400 (406) |+++++++||+++ T Consensus 371 e~l~~~l~rL~~l 383 (391) T 3bwn_A 371 DVFNVFLERLANM 383 (391) T ss_dssp HHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999997 No 59 >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Probab=100.00 E-value=0 Score=360.38 Aligned_cols=311 Identities=19% Similarity=0.251 Sum_probs=251.2 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHH Q ss_conf 33415678678878889999999999808788887888898899999999998648867886707882487278999999 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVA 119 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~ 119 (406) .|.|+.++..+.. ++.. .....+.||+.. ..+||+++|+++ |+ +| ++|++|+|++++|.++++ T Consensus 31 ~i~L~~nenp~~~-~~~~--------~~~~~~~YPd~~-~~~L~~~lA~~~----gv--~p-e~I~~t~G~~eai~~~~~ 93 (356) T 1fg7_A 31 DVWLNANEYPTAV-EFQL--------TQQTLNRYPECQ-PKAVIENYAQYA----GV--KP-EQVLVSRGADEGIELLIR 93 (356) T ss_dssp SEECSSCCCSSCC-CCCC--------CCCCTTSCCCSS-CHHHHHHHHHHH----TS--CG-GGEEEESHHHHHHHHHHH T ss_pred CEEEECCCCCCCC-CHHH--------HHHHHHCCCCCC-HHHHHHHHHHHH----CC--CH-HHEEEECCHHHHHHHHHH T ss_conf 6783288978988-9899--------999984398998-999999999887----84--87-889995889999999999 Q ss_pred HHHHCC-HHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH Q ss_conf 997200-1010131055138999998299699986044666776667788999998502540342156664323344378 Q T0591 120 ATVARG-DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 198 (406) Q Consensus 120 ~l~~pG-d~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~ 198 (406) ++++|| |.|+++.|+|..|...++.+|.+++.++++ ++|.+|++++++.+ +++|++++||||||||.+++.+ T Consensus 94 ~~~~pG~d~Vl~~~P~y~~y~~~~~~~G~~~~~v~~~------~~~~~d~~~l~~~~-~~~~~v~l~~P~NPtG~~~~~~ 166 (356) T 1fg7_A 94 AFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL------DNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQ 166 (356) T ss_dssp HHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC------TTSCCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHH T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCC------CCCCCCHHHHHHCC-CCCEEEEEECCCCCCCCCCCHH T ss_conf 9856898399978986078999999839889993138------88775999998527-8975999808989888878878 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999863787578417502355688876522332102678689985040010463112114332589999999875 Q T0591 199 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ 278 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~ 278 (406) ++++|+++++++ .++|+||+|.+|.++......+ ...+++++++||||.|+++|+|+||+++++++++.+.+++ T Consensus 167 ~l~~i~~~~~~~-~~~ivDeay~~f~~~~~~~~~~-----~~~~~~i~~~s~SK~~gl~GlR~G~~~~~~~~i~~l~~~~ 240 (356) T 1fg7_A 167 DFRTLLELTRGK-AIVVADEAYIEFCPQASLAGWL-----AEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVI 240 (356) T ss_dssp HHHHHHHHHTTT-CEEEEECTTGGGSGGGCSGGGT-----TTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHS T ss_pred HHHHHHHHHHHC-CCEEEEHHHHHHCCCCCCCCCC-----CCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHH T ss_conf 999999997527-9522110487754200134400-----0478715983052145588544043347999999999972 Q ss_pred HHCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 2036761245799999998565-258999999999999999999972799455358873078776688788989999999 Q T0591 279 AIVSLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKIL 357 (406) Q Consensus 279 ~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~L 357 (406) .. ++.+++.|.++..++.+. ..++.+.+.+++++|+.+.+.|++++++....|++|+|+|++++ ++.++++.| T Consensus 241 ~~--~~v~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~~fv~~~~~----~~~~~~~~L 314 (356) T 1fg7_A 241 AP--YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK----ASSAVFKSL 314 (356) T ss_dssp CS--SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET----THHHHHHHH T ss_pred CC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEECC----CHHHHHHHH T ss_conf 87--778889999999998705879999999999999999999998389951347998749999679----999999999 Q ss_pred HHHCCEEEEECCCCCCCCCCEEEEEECCCHH Q ss_conf 9868918961610267999858998509979 Q T0591 358 RLQAGVVVTPGTEFSPHTADSVRLNFSQDHE 388 (406) Q Consensus 358 l~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e 388 (406) + ++||+|+|++.|. ..++|+|+|+++++| T Consensus 315 ~-~~gi~vr~~~~~~-~~~~~lRis~gt~ee 343 (356) T 1fg7_A 315 W-DQGIILRDQNKQP-SLSGCLRITVGTREE 343 (356) T ss_dssp H-HTTEECEECTTST-TCTTEEEEECCCHHH T ss_pred H-HCCCEEECCCCCC-CCCCEEEEEECCHHH T ss_conf 9-6894996277778-999989997089999 No 60 >3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural genomics, seattle structural genomics center for infectious disease; HET: PLP; 1.90A {Giardia lamblia atcc 50803} Probab=100.00 E-value=0 Score=359.18 Aligned_cols=364 Identities=10% Similarity=0.045 Sum_probs=270.5 Q ss_pred HHHHHHCCCCCCEEECCCC---CCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 9996303789833415678---67887888999999999980---87888878888988999999999986488678867 Q T0591 29 ALIRGAPIEGRPVDFSHGD---VDAHEPTPGAFDLFSAGVQS---GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARD 102 (406) Q Consensus 29 ~~~~~~~~~~~~i~ls~G~---pd~~~p~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~ 102 (406) +..+..+ .+..|||++|. .+..+|.+..++.+.+.+.+ ...++|+|..|.++||+++++++...++.....+. T Consensus 41 ~~~~~d~-~~~kinL~iG~y~d~~G~~~v~~~Vk~A~~~l~~~~~~~~~~Y~p~~G~~~lreaia~~~~~~~~~~~~~~~ 119 (448) T 3meb_A 41 VLYNADT-NPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGR 119 (448) T ss_dssp HHHHHCC-CTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC T ss_pred HHHHCCC-CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9984599-978678215654388999788779999999997265667887798656799999999998414686433451 Q ss_pred -EEEEECCCCHHHHHHHH--HHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEE-EECCCCCCCCCCCCCHHHHHHHH--- Q ss_conf -07882487278999999--997200101013105513899999829969998-60446667766677889999985--- Q T0591 103 -GLIITPGTQGALFLAVA--ATVARGDKVAIVQPDYFANRKLVEFFEGEMVPV-QLDYVSADETRAGLDLTGLEEAF--- 175 (406) Q Consensus 103 -~I~it~G~~~~l~~~~~--~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v-~~~~~~~~~~~~~~d~~~l~~~~--- 175 (406) .++.|.|++.++.+++. ...+|||+|++++|+|++|...+...|++...+ ........+..+.+|++.+.+.+ T Consensus 120 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~v~ip~P~w~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 199 (448) T 3meb_A 120 IASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA 199 (448) T ss_dssp EEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 47752520788999999875203899989980898640799999855763025630356565444464889999988627 Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH-HCCCCCCEEEEEECCHHC Q ss_conf 0254034215666432334437899999999863787578417502355688876522332-102678689985040010 Q T0591 176 KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE-AAVDAENVVTIMGPSKTE 254 (406) Q Consensus 176 ~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~ 254 (406) .++++++++++||||||.++|.+++++|+++|+++++++|+||+|.+|.|++......... .....++++++.|+||.| T Consensus 200 ~~~~~vil~~~p~NPTG~~~s~e~~~~i~~~~~~~~~~ii~De~Y~~~~~~~~~~d~~~~~~~~~~~~~~iv~~s~SK~~ 279 (448) T 3meb_A 200 PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF 279 (448) T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 88878999689999898328999999999998655979996543454305996767165555542265200014655555 Q ss_pred CCCCCCCHHHHHHHH---------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHH Q ss_conf 463112114332589---------------9999998752036761245799999998565------2589999999999 Q T0591 255 SLSGYRLGVAFGSRA---------------IIARMEKLQAIVSLRAAGYSQAVLRGWFDEA------PGWMEDRIARHQA 313 (406) Q Consensus 255 ~~~GlRiG~~~~~~~---------------~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~ 313 (406) +++|||+||++++.+ +...+........++++...|.++..++.+. .+++++++.++++ T Consensus 280 ~l~G~RvG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~q~~~~~~l~d~~~~~~w~~el~~~~~~l~~ 359 (448) T 3meb_A 280 GLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHR 359 (448) T ss_dssp CCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 66567248999541788998866778877788899999877747798499999999704817789999999999999999 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCEEEEEECCC----CCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC-CCHH Q ss_conf 99999999972799455358873078776688----788989999999986891896161026799985899850-9979 Q T0591 314 IRDELLHVLRGCEGVFARTPQAGSYLFPRLPK----LAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS-QDHE 388 (406) Q Consensus 314 ~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~----~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e 388 (406) +|+.+.+.|.+. |+.+..|+|+|+.|.+..+ ++. +.+++++|++|+||.++||+ .||||+ .+++ T Consensus 360 rR~~l~~~L~~~-g~~~~~~~g~f~~i~~~~GmF~~~~l-s~e~~~~L~~e~~V~~vpg~---------gRis~a~l~~~ 428 (448) T 3meb_A 360 MRSLLHASLAKR-KTPGPGSKGTWDHILTAIGMFTFTGL-TPEHVDYLKEKWSIYLVKAG---------GRMSMCGLTES 428 (448) T ss_dssp HHHHHHHHHHHT-TCCCSTTTCCCTHHHHCCSSEEECCC-CHHHHHHHHHHHCEEECSGG---------GEEEGGGCCTT T ss_pred HHHHHHHHHHHC-CCCCCCCCCCEEEEECCCCCCCCCCC-CHHHHHHHHHCCCEEEECCC---------EEEEEECCCHH T ss_conf 999999999974-99777999763786057775314699-99999999983899993698---------59998118888 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999985 Q T0591 389 AAVAAARRIVTLVERY 404 (406) Q Consensus 389 ~l~~al~rl~~~~~~~ 404 (406) +++...++|.++++|+ T Consensus 429 ~i~~la~aI~~~v~~l 444 (448) T 3meb_A 429 NCDYVAEAIHDAVTKL 444 (448) T ss_dssp THHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHC T ss_conf 8999999999999837 No 61 >3ly1_A Putative histidinol-phosphate aminotransferase; structural genomics, joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Probab=100.00 E-value=0 Score=351.96 Aligned_cols=336 Identities=18% Similarity=0.267 Sum_probs=267.0 Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 78983341567867887888999999999980878888788889889999999999864886788670788248727899 Q T0591 36 IEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 36 ~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) ....+|+|+.+++.+ .|+|.+.+++.+++.+ .++|++ .|..+||++||+++ |+ ++ ++|++|+|++++|. T Consensus 14 ~~~~~i~l~~nen~~-g~~p~v~~a~~~~~~~--~~~Yp~-~~~~~Lr~aiA~~~----~v--~~-~~I~it~Ga~~~i~ 82 (354) T 3ly1_A 14 STDNPIRINFNENPL-GMSPKAQAAARDAVVK--ANRYAK-NEILMLGNKLAAHH----QV--EA-PSILLTAGSSEGIR 82 (354) T ss_dssp CSSSCEECSSCCCSS-CCCHHHHHHHHHTGGG--TTSCCH-HHHHHHHHHHHHHT----TS--CG-GGEEEESHHHHHHH T ss_pred CCCCCEEEECCCCCC-CCCHHHHHHHHHHHHH--HCCCCC-CCHHHHHHHHHHHH----CC--CH-HHEEEECCHHHHHH T ss_conf 999807977899999-9999999999986677--337999-76899999999997----85--86-88999078999999 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC--CCEEEECCCCCCCCCC Q ss_conf 99999972001010131055138999998299699986044666776667788999998502--5403421566643233 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--GARVFLFSNPNNPAGV 193 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~--~~k~i~l~~P~NPTG~ 193 (406) .++.++++|||+|+++.|+|+.|...++..|.+++.||++ +++++|++.++..+.. ++|++++||||||||. T Consensus 83 ~~~~al~~~Gd~Vi~~~p~y~~~~~~~~~~g~~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~~P~nptG~ 156 (354) T 3ly1_A 83 AAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML------DNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGT 156 (354) T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC------TTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCC T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECC------CCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCC T ss_conf 9999972899889842444630467898548516997323------4567320123321135889879998899899987 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 44378999999998637875784175023556888765223321026786899850400104631121143325899999 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIAR 273 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~ 273 (406) +++.++++ ++..|++++.+||+||+|.++.++........ ......+++++++|+||.|+++|+|+||+++++++++. T Consensus 157 ~~~~e~~~-~~~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~l~G~R~G~~i~~~~~i~~ 234 (354) T 3ly1_A 157 ITPADVIE-PWIASKPANTMFIVDEAYAEFVNDPRFRSISP-MITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIAL 234 (354) T ss_dssp CCCHHHHH-HHHHTCCTTEEEEEECTTGGGCCCTTCCCSHH-HHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHH T ss_pred CCCCCHHH-HHHHHHHCCCEEEECHHHHHHHCCCCCCCCHH-HHHCCCCCCEEEECCCCCCCCCCCCEEEEEECHHHHHH T ss_conf 66521135-57887631855663021566643777787266-53101356048841454225787734799849999999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHH Q ss_conf 99875203676124579999999856525899999999999999999997279945535887307877668878898999 Q T0591 274 MEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEF 353 (406) Q Consensus 274 l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~ 353 (406) +.+++.....+.+. +..+...+. ...+..+.++.++.+|+.+.+.|.++ |+.+. |.+|+|+|++++ .+..++ T Consensus 235 l~~~~~~~~~~~~a--~~~a~a~~~-~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~-p~~g~f~~~~~~---~~~~~~ 306 (354) T 3ly1_A 235 MGRYVAGEKINFSG--VDAALASMN-DSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLV---VPLKDY 306 (354) T ss_dssp HGGGTTCSCCCHHH--HHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECS---SCHHHH T ss_pred HHHHCCCCCCCHHH--HHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC-CCCCCEEEEECC---CCHHHH T ss_conf 99861789987999--999999821-51899998999999999999999988-99485-898618999689---999999 Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 99999868918961610267999858998509979999999999999998 Q T0591 354 VKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 354 ~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~ 403 (406) ...| .++||++. ..|+ .+++|+|+||++ ++++++.+++|+++++| T Consensus 307 ~~~L-~~~gI~v~--~~~~-~~~~~lRis~~t-~ee~~~l~~~l~~~~k~ 351 (354) T 3ly1_A 307 QTHM-ADAGVLIG--RAFP-PADNWCRISLGT-PQEMQWVADTMREFRKK 351 (354) T ss_dssp HHHH-HHTTEECC--CCCT-TCTTEEEEECCC-HHHHHHHHHHHHHHHHT T ss_pred HHHH-HHCCEEEC--CCCC-CCCCEEEEEECC-HHHHHHHHHHHHHHHHC T ss_conf 9999-84998987--7878-998989999389-99999999999999851 No 62 >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Probab=100.00 E-value=0 Score=352.93 Aligned_cols=318 Identities=19% Similarity=0.231 Sum_probs=249.0 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 89833415678678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) ..+.|+|++|+++++ +++.+++++.+.+.......| |..|.++||++|++|+++. + ++ +|+|++|+|++++|++ T Consensus 18 ~~d~~~L~~nenp~~-~p~~~~~~~~~~~~~~~~~~y-p~~g~~~lreaia~~~~~~-~--~~-~d~I~it~Ga~~~l~~ 91 (335) T 1uu1_A 18 KRDKTYLALNENPFP-FPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD-F--LS-KNNVSVGNGADEIIYV 91 (335) T ss_dssp CCCSEEESSCCCSSC-CCHHHHHHHHHTCCGGGGGSC-CCSSCHHHHHHHHHHHTCS-S--CC-GGGEEEESSHHHHHHH T ss_pred CCCCEEEECCCCCCC-CCHHHHHHHHHHHHCCHHCCC-CCCCCHHHHHHHHHHHCCC-C--CC-HHHEEECCCCHHHHHH T ss_conf 899308989999898-999999999998501200478-9987199999999974556-7--98-8996734651167777 Q ss_pred HHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 99999720010101310551389999982996999860446667766677889999985025403421566643233443 Q T0591 117 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYS 196 (406) Q Consensus 117 ~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s 196 (406) ++ .+||+|+++.|+|+.|...++..|.+++.+|++... . .. +....+++++++||||||||.+++ T Consensus 92 l~----~~~d~vl~~~P~y~~y~~~~~~~g~~~~~ip~~~d~----~-~~------~~~~~~~~~~~l~nP~NPtG~~~~ 156 (335) T 1uu1_A 92 MM----LMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDL----R-IP------EVNVGEGDVVFIPNPNNPTGHVFE 156 (335) T ss_dssp HH----HHSSEEEECSSSCHHHHHHHHHHTCEEEECCCCTTS----C-CC------CCCCCTTEEEEEESSCTTTCCCCC T ss_pred HH----HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C-CC------CCCCCCCEEEEECCCCCCCCEEEC T ss_conf 76----403432111222321122200268742224333222----2-21------124665448864155665322205 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 78999999998637875784175023556888765223321026786899850400104631121143325899999998 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK 276 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~ 276 (406) .+++.+ +.++++++|+||+|.++.+.... .. ....+++|+++||||+|++||+|+||+++|+++++.+.. T Consensus 157 ~~~l~~----~~~~~~~ii~De~y~~~~~~~~~----~~--~~~~~~~i~~~S~SK~~~~~GlR~G~~i~~~~~~~~l~~ 226 (335) T 1uu1_A 157 REEIER----ILKTGAFVALDEAYYEFHGESYV----DF--LKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNR 226 (335) T ss_dssp HHHHHH----HHHTTCEEEEECTTHHHHCCCCG----GG--GGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHH T ss_pred HHHHHC----CCCCEEEEECCCCCCHHCCCCCC----CC--CCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 788511----34530588504444100112211----23--345715999925712200222201110254056777887 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHH Q ss_conf 75203676124579999999856525899999999999999999997279945535887307877668878898999999 Q T0591 277 LQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKI 356 (406) Q Consensus 277 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~ 356 (406) ++. ..+.+.++|.++..++++ ..+.++.++.++++|+.+.+.|+++ |+++..|+|+ |+|++++. .++.++++. T Consensus 227 ~~~--~~~~s~~~~~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-F~~~~~~~--~~~~~~~~~ 299 (335) T 1uu1_A 227 VRL--PFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFMEK--EEKERLLEH 299 (335) T ss_dssp HSC--TTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCCSS-EEEEECCT--HHHHHHHHH T ss_pred HHH--HCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCE-EEEEECCC--CCHHHHHHH T ss_conf 764--103206777777631222-2211468999999898889999988-9878789862-89998999--879999999 Q ss_pred HHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 9986891896161026799985899850997999999999999999856 Q T0591 357 LRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 357 Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~r 405 (406) |+ ++||.|.++ ++|+|+|+++++| . +|+.+.++++| T Consensus 300 l~-~~gI~vr~~-------~~~iRis~g~~~e-~----~~~~~~lk~fk 335 (335) T 1uu1_A 300 LR-TKNVAVRSF-------REGVRITIGKREE-N----DMILRELEVFK 335 (335) T ss_dssp HH-HHTEEEEEE-------TTEEEEECCCHHH-H----HHHHHHHHCC- T ss_pred HH-HCCCEECCC-------CCEEEEEECCHHH-H----HHHHHHHHHHC T ss_conf 99-778889879-------9979998089999-9----99999999859 No 63 >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Probab=100.00 E-value=0 Score=359.17 Aligned_cols=328 Identities=15% Similarity=0.115 Sum_probs=249.7 Q ss_pred CEEECCCCCCCCCCCHHHHH-HHHHHHHCCC--CCCCCCC----CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 33415678678878889999-9999998087--8888788----889889999999999864886788670788248727 Q T0591 40 PVDFSHGDVDAHEPTPGAFD-LFSAGVQSGG--VQAYTEY----RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~-~~~~~~~~~~--~~~Y~~~----~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .+|+..|+|.+.. |-+.+ ....++.-.+ ..+|.-. --.++|+++|++..... |-.+..+.+|++|+|++| T Consensus 58 ~~~~~~gdp~~~~--~~~~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~I~~lh~~~-gna~~d~~~IvvG~Gstq 134 (427) T 2hox_A 58 SADVASGDGLFLE--EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV-GNAAAKDRYIVFGVGVTQ 134 (427) T ss_dssp CEECCSCCCGGGH--HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHH-TCBCCTTCEEEEESHHHH T ss_pred CCCCCCCCCCCCC--HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEECCCHHH T ss_conf 1247888987664--7888473531267304455541037876657689999999998510-687888998998978999 Q ss_pred HHHHHHHHH--------HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 899999999--------720010101310551389999982996999860446667766677889999985025403421 Q T0591 113 ALFLAVAAT--------VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF 184 (406) Q Consensus 113 ~l~~~~~~l--------~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l 184 (406) +|++++.+| ++|||+|+++.|+|+.|.....+.+.+.. +|.+|.+.++++.++++++++| T Consensus 135 li~a~~~AL~~~~~~~~~~pgd~Vv~~~P~Y~~Y~~~~~~~~~~~~------------~~~~d~~~~~~~~~~~~~ii~l 202 (427) T 2hox_A 135 LIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY------------VWAGNAANYVNVSNPEQYIEMV 202 (427) T ss_dssp HHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE------------EEEEEGGGGTTCSCGGGEEEEE T ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCC------------CCCCCHHHHHHCCCCCCEEEEE T ss_conf 9999999845412345579999899927871669999997499764------------4269999998517899659999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHH Q ss_conf 56664323344378999999998637875784175023556888765223321026786899850400104631121143 Q T0591 185 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA 264 (406) Q Consensus 185 ~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~ 264 (406) ||||||||.+.. +..++..+|+||+|.+.. ++++.. ..+++|+++||||.|+++|||+||+ T Consensus 203 ~sPnNPTG~l~~----------~v~~~~~~I~DeaY~~~~-----~~~i~~----~~~~~Ivl~S~SK~fglaGlRlGwa 263 (427) T 2hox_A 203 TSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPH-----YTPIKY----KADEDILLFTMSKFTGHSGSRFGWA 263 (427) T ss_dssp ESSCTTTCCCCC----------CSSTTCEEEEECTTCSTT-----TSCCCS----CBCCSEEEEEHHHHTSCGGGCCEEE T ss_pred ECCCCCHHHHHH----------HHHHCCEEEEECCCCCCC-----CCCCCC----CCCCEEEEEECHHHCCCCHHHEEEE T ss_conf 799894277578----------787387899553231776-----576310----3688699975778613651332457 Q ss_pred -HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-- Q ss_conf -325899999998752036761245799999998565-----------258999999999999999999972799455-- Q T0591 265 -FGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA-----------PGWMEDRIARHQAIRDELLHVLRGCEGVFA-- 330 (406) Q Consensus 265 -~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-- 330 (406) +.++++++++.+++....+++|.+.|.++..+|++. ..+.+..++.++++++.+.+.+.+...+.+ T Consensus 264 i~~~~~v~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~l~~~~~f~l~~ 343 (427) T 2hox_A 264 LIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQE 343 (427) T ss_dssp EECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCC T ss_pred EECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC T ss_conf 84889999999986122767767999999999985438999999999999999999999999999999986458611011 Q ss_pred ------------ECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHH Q ss_conf ------------35887307877668878898999999998689189616102679998589985099799999999999 Q T0591 331 ------------RTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIV 398 (406) Q Consensus 331 ------------~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~ 398 (406) ..+.++.|+|++++. ++.+++.++++++||+++||+.||. +++|+||||+.++|+++++++||+ T Consensus 344 ~p~~~~~~f~~~~~~~~~~f~wlk~~~---~~~~~~~~lL~e~gI~v~pG~~FG~-~~~~vRisl~~~~e~l~~al~rL~ 419 (427) T 2hox_A 344 LPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDFDQLMYYLK 419 (427) T ss_dssp CCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHHHHHHHHHH T ss_pred CCCCCCEEEEECCCCCCCCEEEEECCC---CHHHHHHHHHHHCCEEEEECHHCCC-CCCEEEEEECCCHHHHHHHHHHHH T ss_conf 687301144201358875435543699---8699999999869999995210189-969799995698999999999999 Q ss_pred HHHHHHC Q ss_conf 9999856 Q T0591 399 TLVERYR 405 (406) Q Consensus 399 ~~~~~~r 405 (406) +++++.| T Consensus 420 ~~v~~~r 426 (427) T 2hox_A 420 DMVKAKR 426 (427) T ss_dssp HHHTCC- T ss_pred HHHHHHC T ss_conf 9999741 No 64 >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Probab=100.00 E-value=2.2e-34 Score=250.50 Aligned_cols=333 Identities=15% Similarity=0.131 Sum_probs=243.8 Q ss_pred CCCC-EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 8983-341567867887888999999999980878888788889889999999999864886788670788248727899 Q T0591 37 EGRP-VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 37 ~~~~-i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) ...+ +-|+-| +...+|.+++++ .....++|.|. ..++++.+.+++++.+|.+ .++|++|+|+++++. T Consensus 6 ~~~~~~~~~pG---P~~~~~~v~~A~----~~~~~~h~~~~--~~~~~~~~~~~l~~~~~~~---~~~i~~t~g~t~a~~ 73 (392) T 2z9v_A 6 HADPVITLTAG---PVNAYPEVLRGL----GRTVLYDYDPA--FQLLYEKVVDKAQKAMRLS---NKPVILHGEPVLGLE 73 (392) T ss_dssp TSCCSEECSSS---CCCCCHHHHHHT----TSCCCCTTSHH--HHHHHHHHHHHHHHHTTCS---SCCEEESSCTHHHHH T ss_pred CCCCEEEECCC---CCCCCHHHHHHH----CCCCCCCCCHH--HHHHHHHHHHHHHHHHCCC---CCEEEEECCHHHHHH T ss_conf 89982671389---989859999983----86024667899--9999999999999985889---987999186999999 Q ss_pred HHHHHHHHCCHHHHHHHCCCHH--HHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC--CCCEEEECCCCCCCC Q ss_conf 9999997200101013105513--899999829969998604466677666778899999850--254034215666432 Q T0591 116 LAVAATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK--AGARVFLFSNPNNPA 191 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~--~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~--~~~k~i~l~~P~NPT 191 (406) .++.++++|||+|++++|+|++ +...++..|.+++.++.+ .++.+|+++++++++ +++|++++++|+||| T Consensus 74 ~~~~~l~~pGD~vlv~~~~~~~~~~~~~~~~~g~~v~~~~~~------~~~~~d~~~l~~~l~~~~~~~~v~~~~~~n~t 147 (392) T 2z9v_A 74 AAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVP------YNEAIDPQAVADMLKAHPEITVVSVCHHDTPS 147 (392) T ss_dssp HHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECC------TTSCCCHHHHHHHHHHCTTCCEEEEESEEGGG T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCC------CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 999985389998999658713799999999809768971577------89977999999988519880574134789988 Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHH Q ss_conf 33443789999999986378757841750235568887652233210267868998504001046311211433258999 Q T0591 192 GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAII 271 (406) Q Consensus 192 G~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i 271 (406) |.+++ +++|+++|++||+++++|++|+...++.. ... ....+++.|.+|.++.| ..+|+++++++.+ T Consensus 148 G~~~~---l~~i~~la~~~g~~~ivD~~~~~~~~~~~----~~~-----~~~d~~~~s~~K~l~~~-~G~g~l~~~~~~~ 214 (392) T 2z9v_A 148 GTINP---IDAIGALVSAHGAYLIVDAVSSFGGMKTH----PED-----CKADIYVTGPNKCLGAP-PGLTMMGVSERAW 214 (392) T ss_dssp TEECC---HHHHHHHHHHTTCEEEEECTTTBTTBSCC----GGG-----GTCSEEEECSSSTTCCC-SCCEEEEECHHHH T ss_pred CEECC---HHHHHHHHHHCCCCEEECCCCCCCCCCCC----CCC-----CCCEEEEECCCCCCCCC-CCEEEEEECHHHH T ss_conf 48777---99999997531431220120124676775----335-----69829996264524689-9769999868999 Q ss_pred HHHHHHHHH--------------------CCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 999987520--------------------36761245799999998565-258999999999999999999972799455 Q T0591 272 ARMEKLQAI--------------------VSLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFA 330 (406) Q Consensus 272 ~~l~~~~~~--------------------~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 330 (406) +++...... .....+...|.++..+++.. ...+++..++++++++.+.+.|.++ |+++ T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-G~~~ 293 (392) T 2z9v_A 215 AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSV 293 (392) T ss_dssp HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE T ss_conf 875235767640111267775430235666778889999999999999876459999999999999999999856-9886 Q ss_pred ECCCCCEE----EEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE---CCCHHHHHHHHHHHHHHHHH Q ss_conf 35887307----877668878898999999998689189616102679998589985---09979999999999999998 Q T0591 331 RTPQAGSY----LFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF---SQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 331 ~~p~gg~~----~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~---~~~~e~l~~al~rl~~~~~~ 403 (406) ..|+++++ +|+.+|+ +.+..+|+++|++++||.+.||..+. .++++||+. ...++++.+++++|.+.+++ T Consensus 294 ~~~~~~~~~~~v~~~~~p~-g~d~~~~~~~L~~~~gI~v~pG~~~~--~~~~~Ri~~~g~~~~~~~~~~~l~~l~~~L~~ 370 (392) T 2z9v_A 294 WAASDSIASPTTTAVRTPD-GVDEKALRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392) T ss_dssp SSSSGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHCCEEEEEECCC-CCCHHHHHHHHHHCCCEEEECCCCCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 3788022087189998999-98999999999854999997886545--79879981665769999999999999999997 Q ss_pred H Q ss_conf 5 Q T0591 404 Y 404 (406) Q Consensus 404 ~ 404 (406) + T Consensus 371 ~ 371 (392) T 2z9v_A 371 A 371 (392) T ss_dssp T T ss_pred C T ss_conf 6 No 65 >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Probab=100.00 E-value=1.8e-34 Score=251.19 Aligned_cols=320 Identities=13% Similarity=0.075 Sum_probs=220.5 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 34156786788788899999999998087888878888988999999999986488678867078824872789999999 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAA 120 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~ 120 (406) +|++ |......+..... +.+. ..|++..|.+++|+.++.++.. ++.++|++|+|+++++..++.+ T Consensus 31 ~~~~-gl~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~a~~~~~~a 95 (374) T 2aeu_A 31 YDLS-GLSGGFLIDEKDK----ALLN----TYIGSSYFAEKVNEYGLKHLGG------DENDKCVGFNRTSSAILATILA 95 (374) T ss_dssp EECS-SCCCCCCCCHHHH----HHHT----STTHHHHHHHHHHHHHHHHHTC------CTTEEEEEESSHHHHHHHHHHH T ss_pred HHCC-CCCCCCCCHHHHH----HHHH----HHCCCCCCCHHHHHHHHHHHCC------CCCCEEEEECCHHHHHHHHHHH T ss_conf 3002-7888876448999----9999----8608633338999999997157------9852399979849999999983 Q ss_pred HHHCCHHHHH-HHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC-CCCCCCCCCHH Q ss_conf 9720010101-310551389999982996999860446667766677889999985025403421566-64323344378 Q T0591 121 TVARGDKVAI-VQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNP-NNPAGVVYSAE 198 (406) Q Consensus 121 l~~pGd~Vl~-~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P-~NPTG~~~s~~ 198 (406) +..++|.+++ +.|+|+.+...+++.|++.+ .. .|+++++++++++||++++++| |||||.. + T Consensus 96 l~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~l~~~i~~~tk~i~~~~~~~~~~~~~---~ 159 (374) T 2aeu_A 96 LKPKKVIHYLPELPGHPSIERSCKIVNAKYF--ES-----------DKVGEILNKIDKDTLVIITGSTMDLKVIEL---E 159 (374) T ss_dssp HCCSEEEEECSSSSCCTHHHHHHHHTTCEEE--EE-----------SCHHHHHTTCCTTEEEEEECBCTTSCBCCH---H T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEE--CC-----------CCHHHHHHCCCCCCEEEEECCCCCCCCCCH---H T ss_conf 2899849993378875238878864260577--79-----------859999732777846999814888983279---8 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999863787578417502355688876522332102678689985040010463112114332589999999875 Q T0591 199 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ 278 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~ 278 (406) ++++|+++|++||++|++||+|+.+.|++.......... .+ ++++|+||. ++|+|+||+++++++++.+...+ T Consensus 160 ~l~~i~~~a~~~~~~~i~Dea~~~~~~~~~~~~~~~~~~---~d--i~~~S~sK~--~~g~~~G~~~~~~~li~~~~~~~ 232 (374) T 2aeu_A 160 NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG---AD--LVVTSTDKL--MEGPRGGLLAGKKELVDKIYIEG 232 (374) T ss_dssp HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT---CS--EEEEETTSS--SSSCSCEEEEEEHHHHHHHHHHH T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHCC---CE--EEEECCCCC--CCCCCEEEEEEHHHHHHHHHHHH T ss_conf 899999998766279999445235311234789979929---64--999658523--23452159985267799999997 Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------HHHHHHHHHCCCCE--EECCCCCEEEEEECCCCC-- Q ss_conf 2036761245799999998565258999999999999-------99999997279945--535887307877668878-- Q T0591 279 AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIR-------DELLHVLRGCEGVF--ARTPQAGSYLFPRLPKLA-- 347 (406) Q Consensus 279 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r-------~~l~~~L~~~~g~~--~~~p~gg~~~w~~~~~~~-- 347 (406) .....+++++.|.++...++... ...+.+.+++++ +.+...+....+.. +....+.++++....... T Consensus 233 ~~~~~~~~~~~~~aa~~al~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (374) T 2aeu_A 233 TKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI 310 (374) T ss_dssp HTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH T ss_pred HCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEE T ss_conf 42121353899999999998850--8999999999999999998631222343677667540005303442366651343 Q ss_pred --CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECC------CHHHHHHHH-HHHHHHH Q ss_conf --89899999999868918961610267999858998509------979999999-9999999 Q T0591 348 --VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ------DHEAAVAAA-RRIVTLV 401 (406) Q Consensus 348 --~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~------~~e~l~~al-~rl~~~~ 401 (406) ..+.+++.+|++++||+++||..| +.+++++|+||+. ++|++.+++ +.|++++ T Consensus 311 ~~~~~~e~a~~Ll~~~gV~~ip~~~~-p~~~~~lRis~~~~~~~~i~~e~l~~ai~~~lk~~f 372 (374) T 2aeu_A 311 NIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374) T ss_dssp HHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHCCEEEEECCCC-CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 32368999999998498899977988-999885998527455423799999999999999996 No 66 >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S beta lyase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Probab=99.97 E-value=2.6e-28 Score=209.40 Aligned_cols=322 Identities=11% Similarity=0.089 Sum_probs=210.8 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCC-----------HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 7888999999999980878888788889-----------88999999999986488678867078824872789999999 Q T0591 52 EPTPGAFDLFSAGVQSGGVQAYTEYRGD-----------LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAA 120 (406) Q Consensus 52 ~p~~~~~~~~~~~~~~~~~~~Y~~~~G~-----------~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~ 120 (406) ++++.+.+++.+.+.+. |++..|. .+.|+.++++ .|. ++ ++|++|+|++++++.++.+ T Consensus 12 ~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ar~~la~~----~ga--~~-~~v~~~~g~t~al~~~~~~ 80 (384) T 1eg5_A 12 RVDDRVLEEMIVFYREK----YGNPNSAHGMGIEANLHMEKAREKVAKV----LGV--SP-SEIFFTSCATESINWILKT 80 (384) T ss_dssp CCCHHHHHHHHHHHHTC----CCCTTCSSHHHHHHHHHHHHHHHHHHHH----HTS--CG-GGEEEESCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHHH----HCC--CC-CEEEECCCHHHHHHHHHHH T ss_conf 69999999999999973----7986521089999999999999999998----398--96-7299919989999999999 Q ss_pred H----HHCCHHHHHHHCCCHHHHHHHH---HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 9----7200101013105513899999---82996999860446667766677889999985025403421566643233 Q T0591 121 T----VARGDKVAIVQPDYFANRKLVE---FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV 193 (406) Q Consensus 121 l----~~pGd~Vl~~~P~y~~~~~~~~---~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~ 193 (406) + ..+||.|++..+.|+.+....+ ..|.++..+|++ .++.+|+++++++++++|+++++++|+||||. T Consensus 81 l~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~g~~v~~v~~~------~~~~~d~e~le~~i~~~t~~v~v~~~~n~tG~ 154 (384) T 1eg5_A 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD------SRGVVKLEELEKLVDEDTFLVSIMAANNEVGT 154 (384) T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC------TTSCBCHHHHHHHCCTTEEEEEEESBCTTTCB T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC------CCCCCCHHHHHHHCCCCCEEEEEECCCCCCCC T ss_conf 998615899989988985277999999998649889997039------98875899998533679569999776478885 Q ss_pred CCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHH Q ss_conf 443789999999986378--757841750235568887652233210267868998504001046311211433258999 Q T0591 194 VYSAEEIGQIAALAARYG--ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAII 271 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~--~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i 271 (406) .++ +++|.++|+++| +++++|.++.. +..+..+.. ..-.+++.|++|.++.+|++++|+.....+. T Consensus 155 ~~~---l~~i~~la~~~g~~vl~~~D~a~~~----g~~~~~~~~-----~~~d~~~~s~~K~~gp~G~g~~~~~~~~~~~ 222 (384) T 1eg5_A 155 IQP---VEDVTRIVKKKNKETLVHVDAVQTI----GKIPFSLEK-----LEVDYASFSAHKFHGPKGVGITYIRKGVPIR 222 (384) T ss_dssp BCC---HHHHHHHHHHHCTTCEEEEECTTTT----TTSCCCCTT-----TCCSEEEEEGGGGTSCTTCEEEEECTTSCCC T ss_pred CCC---HHHHHHHHHHCCCEEEEEECCCEEC----CEEEEEHHH-----CCCCEEEECCCCCCCCCCCEEEEEECCHHHH T ss_conf 010---1379999997299499993231122----545665655-----3986899568632489977368982650211 Q ss_pred HHHHHH---HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCE--EEEEECCCC Q ss_conf 999987---520367612457999999985652589999999999999999999727994553588730--787766887 Q T0591 272 ARMEKL---QAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGS--YLFPRLPKL 346 (406) Q Consensus 272 ~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~--~~w~~~~~~ 346 (406) ...... ........+...+.++...+......+.+...+++++++.+.+.|.++....+..++... ++.+.++ T Consensus 223 ~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~-- 300 (384) T 1eg5_A 223 PLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP-- 300 (384) T ss_dssp CSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT-- T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHCCCCEEEEEEC-- T ss_conf 455337876730367742999999999999876369999999999999999999856988916801057967999838-- Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCC-----------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 8898999999998689189616102679-----------------9985899850--997999999999999999856 Q T0591 347 AVAPAEFVKILRLQAGVVVTPGTEFSPH-----------------TADSVRLNFS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 347 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-----------------~~~~iRis~~--~~~e~l~~al~rl~~~~~~~r 405 (406) +.+..++... +.++||.+.+|+.+.+. .++++|+|++ +++|+++..++.|+++++++. T Consensus 301 ~~~~~~~~~~-L~~~gI~v~~G~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~edvd~~v~~l~~i~~~l~ 377 (384) T 1eg5_A 301 NIRGSTLQNL-LSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384) T ss_dssp TCCHHHHHHH-HHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC- T ss_pred CCCHHHHHHH-HHHCCEEEECCCHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9799999999-9759929963711038764204799973998444696799964788999999999999999999874 No 67 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Probab=99.96 E-value=9.8e-27 Score=198.76 Aligned_cols=329 Identities=15% Similarity=0.130 Sum_probs=217.2 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH---HHHHHHHHHHCCCCCCCCCEEEEECCCCHHH Q ss_conf 9833415678678878889999999999808788887888898899---9999999986488678867078824872789 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIR---DLLAPRLAAFTGAPVDARDGLIITPGTQGAL 114 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr---~aia~~~~~~~g~~~~~~~~I~it~G~~~~l 114 (406) ...+.|+-| | .+.| +.+.+++.....++- .+++. +.+.+.+.+..+.+-+ ..-|++|.|+|+++ T Consensus 18 ~~~~~f~pG-P---~~~~---~~V~~a~~~~~~~hr-----~~~f~~~~~~~~~~l~~~~~~~~~-~~~i~~~gsgT~a~ 84 (376) T 3f0h_A 18 QGMLNFTVG-P---VMSS---EEVRAIGAEQVPYFR-----TTEFSSTMLENEKFMLEYAKAPEG-SKAVFMTCSSTGSM 84 (376) T ss_dssp SSCEECSSS-S---CCCC---HHHHHHHTSCCCCCS-----SHHHHHHHHHHHHHHHHHHTCCTT-CEEEEESSCHHHHH T ss_pred CCCEEEECC-C---CCCC---HHHHHHHCCCCCCCC-----CHHHHHHHHHHHHHHHHHHCCCCC-CEEEEEECCHHHHH T ss_conf 662685189-9---8886---999997377788878-----889999999999999999589999-75999908799999 Q ss_pred HHHHHHHHHCCHHHHHHHCCCHHHH--HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 9999999720010101310551389--99998299699986044666776667788999998502540342156664323 Q T0591 115 FLAVAATVARGDKVAIVQPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAG 192 (406) Q Consensus 115 ~~~~~~l~~pGd~Vl~~~P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG 192 (406) ..++..+++|||+|++.+++|++.. ..++.+|.+++.++.+. +..+|++++++++++++|++++++++|||| T Consensus 85 ea~~~~l~~~gd~vlv~~~G~f~~~~~~ia~~~G~~v~~i~~~~------g~~~d~e~i~~~i~~~~k~v~~~~~~t~TG 158 (376) T 3f0h_A 85 EAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH------GKKLTKEKLYEYDNQNFTGLLVNVDETSTA 158 (376) T ss_dssp HHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT------TCCCCHHHHHTTTTSCCCEEEEESEETTTT T ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCC------CCCCCHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 99999847995989999598889999999998199744631689------987798999987255884899834678654 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCC-CCCCCHHHHHHHHHH Q ss_conf 3443789999999986378757841750235568887652233210267868998504001046-311211433258999 Q T0591 193 VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL-SGYRLGVAFGSRAII 271 (406) Q Consensus 193 ~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~GlRiG~~~~~~~~i 271 (406) .+.+ +++|.++|+++|+++++|.+++... .+ -.+... .--+++.|..|.++. || +|+++.+++.+ T Consensus 159 ~~~d---i~~I~~i~~~~~~~lvvD~v~s~g~---~p-i~~~~~-----~id~~~~~~~K~l~~p~G--~~~~~~~~~~~ 224 (376) T 3f0h_A 159 VLYD---TMMIGEFCKKNNMFFVCDCVSAFLA---DP-FNMNEC-----GADVMITGSQKVLACPPG--ISVIVLAPRGV 224 (376) T ss_dssp EECC---HHHHHHHHHHTTCEEEEECTTTTTT---SC-CCHHHH-----TCSEEEEETTTTTCCCSS--CEEEEECHHHH T ss_pred CCCC---HHHHHHHHHHCCCEEEEECCCCCCC---CC-CCCCCE-----EEEEHHCCCCCEECCCCC--EEEEEECHHHH T ss_conf 0377---3676766640595589865433567---65-434322-----321001136621015896--05787479999 Q ss_pred HHHHHHH----------------HHCCCCH-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 9999875----------------2036761-245799999998565--25899999999999999999997279945535 Q T0591 272 ARMEKLQ----------------AIVSLRA-AGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFART 332 (406) Q Consensus 272 ~~l~~~~----------------~~~~~~~-~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 332 (406) ..+.... ...+.++ +.....++...++.. +..++...++++++++.+.+.|.++ |++... T Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~T~~~~~i~al~~aL~~l~~e~g~~~~~~r~~~~~~~l~~~L~~l-Gl~~~~ 303 (376) T 3f0h_A 225 ERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVS 303 (376) T ss_dssp HHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECC T ss_pred HHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCEECC T ss_conf 9764058876422066765411345777765446789999999998860339999999999999999999965-986256 Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHH Q ss_conf 887307877668878898999999998689189616102679998589985--09979999999999999998 Q T0591 333 PQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF--SQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 333 p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~~~e~l~~al~rl~~~~~~ 403 (406) ++.+..++.-.++ +.++.++..+|++++||.+.|| +|....+++||+. ..++++++..++.|++++++ T Consensus 304 ~~~~~~v~~~~~~-~~~~~~~~~~l~~~~gi~i~~g--~g~~~~~~~RI~~mg~~t~~di~~l~~al~~~l~~ 373 (376) T 3f0h_A 304 ESPANGVTSVHPT-TANAYDIFLKLKDEYGIWICPN--GGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376) T ss_dssp SSBBTTEEEEEES-SSCHHHHHHHHHHHSSEECEEC--CGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT T ss_pred CCCCCEEEEEECC-CCCHHHHHHHHHHCCCEEEECC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 6778708999799-9998999999997099999778--74447978999678869999999999999999972 No 68 >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Probab=99.95 E-value=2.3e-26 Score=196.20 Aligned_cols=336 Identities=13% Similarity=0.114 Sum_probs=202.0 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-----CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 98334156786788788899999999998087888878888-----9889999999999864886788670788248727 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRG-----DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .+.||+.-+.+... .+|++.+++.+....-....|....+ .+++.+.+.+.+.+..|. +++++|+|+++ T Consensus 7 ~~~in~~p~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~le~~~a~~~g~-----e~~~~~~~~~~ 80 (371) T 2e7j_A 7 KDFINIDPLQTGGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-----DVARVTNGARE 80 (371) T ss_dssp -CCEECCHHHHTCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-----SEEEEESSHHH T ss_pred CCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CEEEEECCHHH T ss_conf 00325785323796-8899999999983477400034667655456716999999999998688-----97999895999 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC-----CEEEECCCC Q ss_conf 899999999720010101310551389999982996999860446667766677889999985025-----403421566 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG-----ARVFLFSNP 187 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~-----~k~i~l~~P 187 (406) ++..++.++++|||.|+++.++|.+....++..|++++.+|.+ +..++.+|++++++++++. ++++++++| T Consensus 81 a~~~~~~~~~~~gd~vi~~~~~h~s~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~l~~~i~~~~~~~~~~lv~~~~~ 156 (371) T 2e7j_A 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT----DYPDYAITPENFAQTIEETKKRGEVVLALITYP 156 (371) T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC----CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCC----CCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECC T ss_conf 9999999962899999980774199999999849989964554----566677799999999875423578389999589 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH Q ss_conf 64323344378999999998637875784175023556888765223321026786899850400104631121143325 Q T0591 188 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 188 ~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~ 267 (406) +||||.+.+ +++|+++|++||+++++|++|+.-.+ ........ .+ ++++|+||.++.+| ++||++++ T Consensus 157 ~~~~G~~~~---l~~i~~~~~~~~~~~~~D~a~~~g~~----~~~~~~~g---~D--~~~~S~~K~l~~~g-~~G~l~~~ 223 (371) T 2e7j_A 157 DGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKEIG---AD--FIVGSGHKSMAASG-PIGVMGMK 223 (371) T ss_dssp CTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----CCCHHHHT---CS--EEEEEHHHHSSCCS-SCEEEEEC T ss_pred CCCCCEEEH---HHHHHHHHHCCCCEEEECCCCCCCEE----EECCCCCC---CC--CCCCCCCCCCCCCC-CEEEEEEC T ss_conf 899854231---99999986311642887354444424----21123310---24--45677750137767-88999987 Q ss_pred HHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE--CCCCCE Q ss_conf 89999999875203--------67612457999999985652589999999999999999999727994553--588730 Q T0591 268 RAIIARMEKLQAIV--------SLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR--TPQAGS 337 (406) Q Consensus 268 ~~~i~~l~~~~~~~--------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~--~p~gg~ 337 (406) +++++.+.+..... ....+......+.+.++...+.++...... ++...+.+.|.++ |+... .|.... T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~-g~~~~~~~~~~~~ 301 (371) T 2e7j_A 224 EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEV-EKARRFAAEMEKL-GIKQLGDNPHNHD 301 (371) T ss_dssp TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHH-HHHHHHHHHHHHT-TCEEESSSSCCSS T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-CCEECCCCCCCCC T ss_conf 7999998741566666632221101453799999999999999999999999-9999999999856-9965577888764 Q ss_pred EEEEECCCC-------CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE-ECCCHHHHHHHHHHHHHHHHHH Q ss_conf 787766887-------889899999999868918961610267999858998-5099799999999999999985 Q T0591 338 YLFPRLPKL-------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN-FSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 338 ~~w~~~~~~-------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-~~~~~e~l~~al~rl~~~~~~~ 404 (406) .++...+.. ......+... +.+.++... ..+ ....+|++ +..++|+++..++.|++.+++| T Consensus 302 ~~~~~~~~~~~i~~~~~~~~~~~~~~-l~~~~~~~i---~~g--~~~~~~~~~~~~t~eeid~li~al~eI~~~y 370 (371) T 2e7j_A 302 LMFFHAEVLYEISKKAKGGRFFLYRE-LKSRKIHGI---KPG--LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371) T ss_dssp EEEEECHHHHHHHHHSSSGGGHHHHH-HHHTTEECS---CTT--CCSEEEEECTTCCHHHHHHHHHHHHHHHHHC T ss_pred EEEECCCCHHHHHHHHHCCCHHHHHH-HHHCCCEEE---ECC--CCCEEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 69852620367777751153688988-876485367---137--7625888457799999999999999999985 No 69 >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocysteine, aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Probab=99.95 E-value=2.1e-25 Score=189.82 Aligned_cols=332 Identities=15% Similarity=0.101 Sum_probs=206.5 Q ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCC----CHHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 0378983341567867887888999999999980---87888878888----9889999999999864886788670788 Q T0591 34 APIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQS---GGVQAYTEYRG----DLGIRDLLAPRLAAFTGAPVDARDGLII 106 (406) Q Consensus 34 ~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~---~~~~~Y~~~~G----~~~Lr~aia~~~~~~~g~~~~~~~~I~i 106 (406) .|.....+-|..+... +++..+.+++.+.+.. .+...|..... ..++|+.||++ .|. ++ ++|++ T Consensus 11 fp~~~~~~yln~a~~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~iA~~----~g~--~~-~~v~~ 81 (390) T 1elu_A 11 FPGLANKTYFNFGGQG--ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAET----FNV--DP-NTITI 81 (390) T ss_dssp CGGGTTSEECCTTTCC--CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHH----TTS--CG-GGEEE T ss_pred CCCCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH----CCC--CC-CCEEE T ss_conf 8888998997697325--799999999999999745278763056789999999999999998----099--96-73999 Q ss_pred ECCCCHHHHHHHHHH-HHCCHHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 248727899999999-720010101310551389999----982996999860446667766677889999985025403 Q T0591 107 TPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARV 181 (406) Q Consensus 107 t~G~~~~l~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~ 181 (406) |+|+|+++++++.++ ++|||+|++.+..|++....+ +..|++++.+|++.. .+...+.+.++++++++||+ T Consensus 82 ~~~~T~a~~~~~~~l~~~~gd~Vv~~~~~~~s~~~~~~~la~~~g~~v~~vp~~~~----~~~~~~~~~l~~~~~~~t~l 157 (390) T 1elu_A 82 TDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAAT----LNQGDAAAVLANHLGPKTRL 157 (390) T ss_dssp ESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGG----SSSSCHHHHHHTTCCTTEEE T ss_pred ECCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCC----CCCCHHHHHHHHHCCCCCEE T ss_conf 89889999999981735898989988897875899999998718859998043035----77221799999717999369 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHC----CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC Q ss_conf 42156664323344378999999998637----87578417502355688876522332102678689985040010463 Q T0591 182 FLFSNPNNPAGVVYSAEEIGQIAALAARY----GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS 257 (406) Q Consensus 182 i~l~~P~NPTG~~~s~~~l~~i~~~a~~~----~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 257 (406) +++++++||||.+++ +++|+++|+++ ++++++|.+++. |..+..+... ..+ +++.|..|.++.| T Consensus 158 v~~~~~~n~tG~~~p---i~~i~~l~~~~~~~~~~~~~vD~a~~~----g~~~~d~~~~---~~D--~~~~s~hK~l~gp 225 (390) T 1elu_A 158 VILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDFSRL---EVD--YYAFTGHKWFAGP 225 (390) T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCTTTS---CCS--EEEEESSSTTCCC T ss_pred EEEECCCCCCCEECC---HHHHHHHHHHHCCCCCCEEEEECCCCC----CCCCCCHHHH---CCC--EEEECCCCCCCCC T ss_conf 999788778851246---898889999854678964999666556----6544674561---898--9998780236788 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---------------------HCCCCHHHHHHHH-HHHHHHCCC--HHHHHHHHHHHH Q ss_conf 1121143325899999998752---------------------0367612457999-999985652--589999999999 Q T0591 258 GYRLGVAFGSRAIIARMEKLQA---------------------IVSLRAAGYSQAV-LRGWFDEAP--GWMEDRIARHQA 313 (406) Q Consensus 258 GlRiG~~~~~~~~i~~l~~~~~---------------------~~~~~~~~~~q~a-~~~~l~~~~--~~~~~~~~~~~~ 313 (406) ..+|+++.++++++.+..... ....+++...+.+ +..+++-.. ...+...+++.+ T Consensus 226 -~G~G~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~r~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~ 304 (390) T 1elu_A 226 -AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ 304 (390) T ss_dssp -TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_pred -CCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf -9776689768899755863468875345543564532332011145788799999999999999962839999999999 Q ss_pred HHHHHHHHHHHCCCCEEECC---CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHH Q ss_conf 99999999972799455358---873078776688788989999999986891896161026799985899850--9979 Q T0591 314 IRDELLHVLRGCEGVFARTP---QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHE 388 (406) Q Consensus 314 ~r~~l~~~L~~~~g~~~~~p---~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e 388 (406) +++.+.+.|.+++|+++..+ .+++ +.+.++. ..+..++... |+++||.+.. + ..++++|+|+. +++| T Consensus 305 ~~~~l~~~L~~~~g~~~~~~~~~~~~i-v~f~~~~-~~~~~~~~~~-L~~~gi~v~~---~--~~~~~lRis~~~~nt~e 376 (390) T 1elu_A 305 RSEFLWRGLNQLPHVHCLATSAPQAGL-VSFTVDS-PLGHRAIVQK-LEEQRIYLRT---I--ADPDCIRACCHYITDEE 376 (390) T ss_dssp HHHHHHHHHHHSTTEEESCSSCCSSSE-EEEEECS-SSCHHHHHHH-HHHTTEECEE---E--TTTTEEEEECCTTCCHH T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCEE-EEEEECC-CCCHHHHHHH-HHHCCEEEEE---C--CCCCEEEEECCCCCCHH T ss_conf 999999998639986976888877428-9998089-8899999999-9978918983---4--89998999767889999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q T0591 389 AAVAAARRIVT 399 (406) Q Consensus 389 ~l~~al~rl~~ 399 (406) +++..++.|++ T Consensus 377 did~l~~~L~e 387 (390) T 1elu_A 377 EINHLLARLAD 387 (390) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHHH T ss_conf 99999999997 No 70 >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A* Probab=99.95 E-value=3.6e-25 Score=188.21 Aligned_cols=325 Identities=16% Similarity=0.115 Sum_probs=208.7 Q ss_pred EEECCCCCCCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC-CCCHHHHHHH Q ss_conf 34156786788788-899999999998087888878888988999999999986488678867078824-8727899999 Q T0591 41 VDFSHGDVDAHEPT-PGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITP-GTQGALFLAV 118 (406) Q Consensus 41 i~ls~G~pd~~~p~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~-G~~~~l~~~~ 118 (406) ++|+-| | .|. |.+. +++.+....+|++ +..++.+.+.+++.+.+|.+. ++.+++.+ ++++++.+++ T Consensus 2 ~~~~pg-P---~~~~~~v~----~A~~~~~~~~~~~--~~~~~~~~~r~~la~~~g~~~--~~~~~~~~~s~t~a~~~~~ 69 (353) T 2yrr_A 2 LLLTPG-P---TPIPERVQ----KALLRPMRGHLDP--EVLRVNRAIQERLAALFDPGE--GALVAALAGSGSLGMEAGL 69 (353) T ss_dssp EECSSS-S---CCCCHHHH----GGGGSCCCCTTCH--HHHHHHHHHHHHHHHHHCCCT--TCEEEEESSCHHHHHHHHH T ss_pred CCCCCC-C---CCCHHHHH----HHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHCCCC--CCEEEEECCHHHHHHHHHH T ss_conf 415689-8---79859999----9841330565609--999999999999999849799--8889996857999999999 Q ss_pred HHHHHCCHHHHHHHCCCHHHH-HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCCCCCCCCCCC Q ss_conf 999720010101310551389-9999829969998604466677666778899999850-25403421566643233443 Q T0591 119 AATVARGDKVAIVQPDYFANR-KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSNPNNPAGVVYS 196 (406) Q Consensus 119 ~~l~~pGd~Vl~~~P~y~~~~-~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~P~NPTG~~~s 196 (406) .. +.+||.|+++.++|..+. ......+.++..++.+ .+..+|++.++++++ ++++++++++++||||.+++ T Consensus 70 ~~-~~~g~~vv~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~ai~~~~~~~v~~~~~~n~tG~~~~ 142 (353) T 2yrr_A 70 AN-LDRGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFP------PGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP 142 (353) T ss_dssp HT-CSCCCEEEEECSHHHHHHHHHHHHTTCCEEEEECC------TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC T ss_pred HH-CCCCCEEEEECCHHHHHHHHHHHHHCCCCEECCCC------CCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEECC T ss_conf 85-78982899978748899999999829953541789------799869999999734599649999788897568715 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 78999999998637875784175023556888765223321026786899850400104631121143325899999998 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK 276 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~ 276 (406) +++|.++|+++|+++++|++|....++. ..... . . .+++.|.+|.++. +..+|+++..++++..+.. T Consensus 143 ---l~~I~~~~~~~g~~~~vD~~~~~~~~~~----~~~~~-~--~--d~~~~~~~K~l~~-~~g~g~l~~~~~~~~~~~~ 209 (353) T 2yrr_A 143 ---AEAIGALAKEAGALFFLDAVTTLGMLPF----SMRAM-G--V--DYAFTGSQKCLSA-PPGLAPIAASLEARKAFTG 209 (353) T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTTTSCC----CHHHH-T--C--SEEECCTTSTTCC-CSSCEEEEECHHHHHHCCC T ss_pred ---HHHHHHHHCCCCCEEEEEECCCCCEEEE----ECCCC-E--E--EEEEECCCCCCCC-CCCEEEEEEEHHHHHHHCC T ss_conf ---9999656334793799950333325776----22674-5--7--8999438774667-9987999984789887247 Q ss_pred HH--------------HHCC-CCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC--CEE Q ss_conf 75--------------2036-761245799999998565-25899999999999999999997279945535887--307 Q T0591 277 LQ--------------AIVS-LRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQA--GSY 338 (406) Q Consensus 277 ~~--------------~~~~-~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g--g~~ 338 (406) .. .... .......+.++.+.+... +......+++....++.+.+.|... |+....++. ... T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~ 288 (353) T 2yrr_A 210 KRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTV 288 (353) T ss_dssp CSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTE T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCEE T ss_conf 87767688888766532776677635799999999999998679999999999999999999865-97636875568659 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE---ECCCHHHHHHHHHHHHHHHH Q ss_conf 87766887889899999999868918961610267999858998---50997999999999999999 Q T0591 339 LFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN---FSQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 339 ~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis---~~~~~e~l~~al~rl~~~~~ 402 (406) +++.+|+ +.+..++++.| .++||.|.||... ..++++|+| +..++|++++.++.|++++. T Consensus 289 ~~~~~p~-~~~~~~l~~~L-~~~gI~v~~G~~~--~~~~~iRvs~~g~~~t~edv~~~l~al~~~La 351 (353) T 2yrr_A 289 LVVRPPE-GVDADRLVRAL-YAEGVAVAGGIGP--TRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353) T ss_dssp EEEECCT-TCCHHHHHHHH-HHTTEECEECCGG--GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH T ss_pred EEEECCC-CCCHHHHHHHH-HHCCCEEECCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9997899-99999999999-8789599846501--37998999788888999999999999999985 No 71 >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP, virulence, acyltransferase, aminotransferase, pyridoxal phosphate, transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Probab=99.95 E-value=2.3e-24 Score=182.78 Aligned_cols=330 Identities=12% Similarity=0.060 Sum_probs=218.1 Q ss_pred CCEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC Q ss_conf 8334156786-78878889999999999808788------8878888988999999999986488678867078824872 Q T0591 39 RPVDFSHGDV-DAHEPTPGAFDLFSAGVQSGGVQ------AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQ 111 (406) Q Consensus 39 ~~i~ls~G~p-d~~~p~~~~~~~~~~~~~~~~~~------~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~ 111 (406) +.|+|+.-+. .+ .-.|.+.+++.+++.+-+.. -|+......+|.+.+|+|+ |. ++ .++++.++ T Consensus 60 ~~i~~~sndYLgl-~~hp~v~~a~~~a~~~~g~~~~~s~~~~g~~~~~~~LE~~lA~~~----G~----E~-al~~~SG~ 129 (409) T 3kki_A 60 DDIILQSNDYLAL-ANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GF----DE-CLLSQSGW 129 (409) T ss_dssp TSEECCCSCTTCC-TTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TC----SE-EEEESCHH T ss_pred CEEEEECCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CC----CE-EEEECCHH T ss_conf 8688588665576-789999999999999828998766863688769999999999987----89----82-99987889 Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCCCCC Q ss_conf 78999999997200101013105513899999829969998604466677666778899999850-25403421566643 Q T0591 112 GALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSNPNNP 190 (406) Q Consensus 112 ~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~P~NP 190 (406) .+...++.++++|||.|++...++......+.+.+.+.+.++ ..|++.+++.+. .+++++++.+++++ T Consensus 130 ~An~~~i~al~~~gd~Vi~d~~~H~s~~~~~~~~~~~~~~~~-----------h~d~~~l~~~l~~~~~~~Ivve~~~s~ 198 (409) T 3kki_A 130 NANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFM-----------HNNCDHLRMLIQRHGPGIIVVDSIYST 198 (409) T ss_dssp HHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEEC-----------TTCHHHHHHHHHHHCSCEEEEESBCTT T ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEEEEC-----------CCCHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 999999999973898899538725878877874288059978-----------999899999986259838985798789 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 23344378999999998637875784175023556888765223321026786899850400104631121143325899 Q T0591 191 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) +|.+.+ +++|+++|+++|+++++||+|+...+.. .-..+...........+++.|+||.|+.+| ||+++++++ T Consensus 199 ~G~i~~---L~~i~~la~~~ga~livDeah~~g~~G~-~g~G~~~~~~~~~~~di~~~tlsKalG~~g---G~v~~~~~~ 271 (409) T 3kki_A 199 LGTIAP---LAELVNISKEFGCALLVDESHSLGTHGP-NGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCNNEV 271 (409) T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG-GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEESSSG T ss_pred CCCCCC---HHHHHHHHHHHCCCCCCHHHHHCCCCCC-CCCCCCCCCCCCCCCCCEECCCCCCCCCCE---EEEECCHHH T ss_conf 987547---9999999998584302115540466578-887631002323333311013566776523---799626058 Q ss_pred HHHHHHHHH-HCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCC Q ss_conf 999998752-03676124579-9999998565258999999999999999999972799455358873078776688788 Q T0591 271 IARMEKLQA-IVSLRAAGYSQ-AVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAV 348 (406) Q Consensus 271 i~~l~~~~~-~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~ 348 (406) ++.++.... ........+.+ .++.+.++-.. ...+.+++++++.+++.+.|.++ |+.+.. + +..+.+.+.+ .. T Consensus 272 i~~l~~~~~~~~~s~~~~p~~aaa~~aaL~~l~-~~~~~r~~l~~~~~~l~~~L~~~-G~~i~~-~-s~Iv~v~~g~-~~ 346 (409) T 3kki_A 272 NRCVPFISYPAIFSSTLLPYEAAGLETTLEIIE-SADNRRQHLDRMARKLRIGLSQL-GLTIRS-E-SQIIGLETGD-ER 346 (409) T ss_dssp GGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTT-TCCCCC-S-SSEEEEEEES-HH T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHC-CCCCCC-C-CCEEEEEECC-HH T ss_conf 999987265643346778899999999899985-28899999999999999999977-998799-9-9979999698-89 Q ss_pred CHHHHHHHHHHHCCEEEEECCCCCC---CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf 9899999999868918961610267---99985899850--99799999999999999985 Q T0591 349 APAEFVKILRLQAGVVVTPGTEFSP---HTADSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 349 ~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) ...++++.| .++||.+.+- ..| .+...+|+++. .++|++++.++.|++++++. T Consensus 347 ~a~~~~~~L-~e~GI~v~~i--~~P~vp~g~~~lR~~~~~~~t~edId~~i~~l~e~l~~~ 404 (409) T 3kki_A 347 NTEKVRDYL-ESNGVFGSVF--CRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409) T ss_dssp HHHHHHHHH-HHTTEECEEE--CTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHH-HHCCCEEEEE--CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 999999999-9789638657--999989997259998088899999999999999999635 No 72 >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Probab=99.93 E-value=3.6e-24 Score=181.43 Aligned_cols=328 Identities=16% Similarity=0.146 Sum_probs=217.8 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHH Q ss_conf 33415678678878889999999999808788887888898899999999998648867886707882487278999999 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVA 119 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~ 119 (406) .|||+.- ....|+|++++++.++. .+...|++.....+|++.+|+++ |. + .++++++++++...++. T Consensus 5 ~~~~~~~--~~~~psp~~~~A~~~a~--~g~~~yg~~p~~~~le~~lAe~~----G~----e-~~~~~~sGt~A~~~ai~ 71 (347) T 1jg8_A 5 MIDLRSD--TVTKPTEEMRKAMAQAE--VGDDVYGEDPTINELERLAAETF----GK----E-AALFVPSGTMGNQVSIM 71 (347) T ss_dssp CEECSCG--GGCCCCHHHHHHHHTCC--CCCGGGTCCHHHHHHHHHHHHHH----TC----S-EEEEESCHHHHHHHHHH T ss_pred EEECCCC--CCCCCCHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHH----CC----C-CEEEECCHHHHHHHHHH T ss_conf 1775667--39999999999999645--47852489869999999999988----89----9-19997588999999999 Q ss_pred HHHHCCHHHHHHHCCCHHHHHHH---HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC------CCEEEECCCCCC- Q ss_conf 99720010101310551389999---98299699986044666776667788999998502------540342156664- Q T0591 120 ATVARGDKVAIVQPDYFANRKLV---EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNN- 189 (406) Q Consensus 120 ~l~~pGd~Vl~~~P~y~~~~~~~---~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~N- 189 (406) +++.+||.+++..+.+..+.... ...+.....++.+ .+..|++.+++.+.. ++++++++++.| T Consensus 72 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347) T 1jg8_A 72 AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-------NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNR 144 (347) T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-------TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTT T ss_pred HHHCCCCEEEECCCCCEEEECCCCCCCCCCEEEECCCCC-------CCCCCHHHHHHHHHHHHHCCCCCCEEEECCEEEC T ss_conf 864469648633654303211232102354067455675-------6766989999998664221566413552240202 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHH Q ss_conf 32334437899999999863787578417502355688876522332102678689985040010463112114332589 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRA 269 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~ 269 (406) +.+...+.++++++.++|++|+++++.|+++......+........ ... .. ..+++|..+..|.+.|+.....+ T Consensus 145 ~g~~~~~~~~l~~~~~~~~~~g~~l~~D~a~~~~~~~~~~~~~~~~--~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 218 (347) T 1jg8_A 145 SGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY--AGY--AD--SVMFCLSKGLCAPVGSVVVGDRD 218 (347) T ss_dssp TTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH--HHT--CS--EEEEESSSTTCCSSCEEEEECHH T ss_pred CCCEECCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHH--CCC--CE--EEEECCCCCCCCCCCHHHHCCHH T ss_conf 5862225889999999987522799840221023003565666763--553--20--36753677777765313215598 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCC Q ss_conf 99999987520367612457999999--9856525899999999999999999997279945535887307877668878 Q T0591 270 IIARMEKLQAIVSLRAAGYSQAVLRG--WFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA 347 (406) Q Consensus 270 ~i~~l~~~~~~~~~~~~~~~q~a~~~--~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~ 347 (406) ++............+.+.....++.. .++.... ..+...++++.+.+.|.++.+.....|..++++|++++... T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 294 (347) T 1jg8_A 219 FIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD----RLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK 294 (347) T ss_dssp HHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST----THHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCC T ss_conf 88777621777776605678889899988887788----89999999987777888617776668987559999817975 Q ss_pred CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf 8989999999986891896161026799985899850--99799999999999999985 Q T0591 348 VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 348 ~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) .+..+++++|. ++||.+.|. +++++|+++. .++|++++.++.|+++++|+ T Consensus 295 ~~a~~l~~~L~-~~Gi~v~~~------~~~~iRl~~~~~~t~edid~~i~al~~v~~e~ 346 (347) T 1jg8_A 295 VNAHGFIEALR-NSGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347) T ss_dssp SCHHHHHHHHH-HHTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHH-HCCCEEECC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 31999999999-789989517------98989998899999999999999999999975 No 73 >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic protozoa, SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 Probab=99.93 E-value=9.3e-24 Score=178.61 Aligned_cols=331 Identities=15% Similarity=0.148 Sum_probs=207.3 Q ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 98334156786788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 38 GRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 38 ~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) +.+.+|..-+ +..++|.+++++.++... ...+|++..-..++|+.|+++ +|.+ .++|++|+|++++...+ T Consensus 13 ~~~~~f~nd~--~~g~hP~v~eA~~~a~~~-~~~~yg~d~~~~~lr~~ia~~----~g~~---~~~v~f~~~Gtean~~a 82 (359) T 1svv_A 13 PKPYSFVNDY--SVGMHPKILDLMARDNMT-QHAGYGQDSHCAKAARLIGEL----LERP---DADVHFISGGTQTNLIA 82 (359) T ss_dssp --CEECSCSC--SSCCCHHHHHHHHHHTTC-CCCSTTCSHHHHHHHHHHHHH----HTCT---TSEEEEESCHHHHHHHH T ss_pred CCCCCCCCCC--CCCCCHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHH----HCCC---CCEEEECCCHHHHHHHH T ss_conf 8877756667--888899999999988615-677878998999999999998----5999---62599838679999999 Q ss_pred HHHHHHCCHHHHHHHCCCHHHH--HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC------CEEEECCCCCC Q ss_conf 9999720010101310551389--999982996999860446667766677889999985025------40342156664 Q T0591 118 VAATVARGDKVAIVQPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNN 189 (406) Q Consensus 118 ~~~l~~pGd~Vl~~~P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~N 189 (406) +.+++.+||.+++..+.+.... ......+.....++.. .+..|++..+++.... ...+++++++| T Consensus 83 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (359) T 1svv_A 83 CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-------DGKLRVADIESALHENRSEHMVIPKLVYISNTT 155 (359) T ss_dssp HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-------TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSC T ss_pred HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCC-------CCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC T ss_conf 9972378884222344422442013433355137741144-------444568899997543320467761132101222 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC-CCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHH Q ss_conf 32334437899999999863787578417502355688876-52233210267868998504001046311211433258 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASY-THLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR 268 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~ 268 (406) ++|.+++.++++++.++|++|++++++|++|....+..... ....... ....+...+++|.+++++ .++.+... T Consensus 156 ~~g~~~~~~~l~~i~~l~~~~~~~~~~D~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~~~~--~~~~~~~~ 230 (359) T 1svv_A 156 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA---RLTDMFYIGATKAGGMFG--EALIILND 230 (359) T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH---HHCSEEEEECTTTTCSSC--EEEEECSG T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC---CCCCEEECCCCCCCCCCC--CCCCCCCC T ss_conf 3333310677777888876641431120001112661166433322455---454146303555554543--33223441 Q ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC Q ss_conf 9999999875--20367612457999999985652589999999999999999999727994553588730787766887 Q T0591 269 AIIARMEKLQ--AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL 346 (406) Q Consensus 269 ~~i~~l~~~~--~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~ 346 (406) .......... .......+.....++..++.+ ........+...+++.+.+.|++. |+.+..|..++++|+++++ T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~--~~~~~~~~~~~~~a~~l~~~l~~~-g~~~~~p~~~n~v~~~~~~- 306 (359) T 1svv_A 231 ALKPNARHLIKQRGALMAKGWLLGIQFEVLMKD--NLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN- 306 (359) T ss_dssp GGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH- T ss_pred CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCEEEEECCH- T ss_conf 000001200246567633189999999997300--156789999999777788888608-9777369977388785698- Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH Q ss_conf 88989999999986891896161026799985899850--997999999999999999 Q T0591 347 AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 347 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~ 402 (406) +.+..|.++..+...+.. ..+.+.+|++++ ++++++++.++.|++++. T Consensus 307 -----~~~~~l~~~~~~~~i~~~---~~~~~~iR~~~~~~~TeedId~~v~al~~~la 356 (359) T 1svv_A 307 -----TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359) T ss_dssp -----HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC-- T ss_pred -----HHHHHHHHHHHHHCCCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf -----999999971245073554---79983799988999999999999999999985 No 74 >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Probab=99.93 E-value=9.7e-25 Score=185.28 Aligned_cols=318 Identities=12% Similarity=0.026 Sum_probs=201.4 Q ss_pred HHHHHHHHHHHHCCC----CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHH Q ss_conf 899999999998087----8888788889889999999999864886788670788248727899999999720010101 Q T0591 55 PGAFDLFSAGVQSGG----VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAI 130 (406) Q Consensus 55 ~~~~~~~~~~~~~~~----~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~ 130 (406) |..++++.+++..-+ ...|+...-..+|.+.+|+|+ |. ++-|++++| ++++.++++++++|||+|++ T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~yg~~p~v~~lE~~~A~~~----G~----e~al~~~SG-t~An~~Al~al~~~Gd~viV 91 (357) T 3lws_A 21 KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL----GM----DDAVFFPSG-TMAQQVALRIWSDETDNRTV 91 (357) T ss_dssp CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH----TC----SEEEEESCH-HHHHHHHHHHHHHHHTCCEE T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH----CC----CCEEEECCH-HHHHHHHHHHHHCCCCEEEE T ss_conf 7789999999998547767883689989999999999986----99----969993289-99999999998289984899 Q ss_pred HHCCCHHHH-----HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC-CCCHHHHHHHH Q ss_conf 310551389-----999982996999860446667766677889999985025403421566643233-44378999999 Q T0591 131 VQPDYFANR-----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV-VYSAEEIGQIA 204 (406) Q Consensus 131 ~~P~y~~~~-----~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~-~~s~~~l~~i~ 204 (406) ..+.|.... ......+.....++.. ....+.+ .....+++|++++++|+||+|. +++.+++++|. T Consensus 92 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~v~~~~~~~~~g~~~~~~~~l~~i~ 162 (357) T 3lws_A 92 AYHPLCHLEIHEQDGLKELHPIETILVGAA-------DRLMTLD--EIKALPDIACLLLELPQREIGGVAPAFSELETIS 162 (357) T ss_dssp EECTTCHHHHSSTTHHHHHSSCEEEECSCT-------TSCCCHH--HHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHH T ss_pred EECCCHHHHHHHHCCHHHCCCEEEEEECCC-------CCHHHHH--HHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHH T ss_conf 855504799985000553366058863033-------3223344--3014886316999801026787154399999988 Q ss_pred HHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99863787578417502355688876522332102678689985040010463112114332589999999875203676 Q T0591 205 ALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLR 284 (406) Q Consensus 205 ~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~ 284 (406) ++|++|++++++|++|....+.......... .....++..|++|.++..+ .++++++.+++..++..+.....+ T Consensus 163 ~~a~~~~~~li~D~a~~~g~~~~~~~~~~~~----~~~~d~~~~~~~k~~~~~~--g~~~~~~~~~~~~~~~~~~~~g~~ 236 (357) T 3lws_A 163 RYCRERGIRLHLDGARLFEMLPYYEKTAAEI----AGLFDSIYISFYKGLGGIA--GAILAGPAAFCQTARIWKRRYGGD 236 (357) T ss_dssp HHHHHTTCEEEEEETTHHHHHHHHTCCHHHH----HTTSSEEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHTTCC T ss_pred HHHHHCCCCEEECCHHHCCCCCCCCCCCHHC----CCCCEEEEEECCCCCCCCC--EEEEECCHHHHHHHHHHHHHHCCC T ss_conf 8776549731322211046532345560002----4444069985047755565--399980489999999999982886 Q ss_pred HHHH-HHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC-CCEEEEEECCCCCCCHHHHHHHHHHHC Q ss_conf 1245-7999-999985652589999999999999999999727994553588-730787766887889899999999868 Q T0591 285 AAGY-SQAV-LRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ-AGSYLFPRLPKLAVAPAEFVKILRLQA 361 (406) Q Consensus 285 ~~~~-~q~a-~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-gg~~~w~~~~~~~~~~~~~~~~Ll~~~ 361 (406) .... .+.+ ....++ ...+....++++++.+.+.|.+++|+.+..+. ++.++|+.++....+..++..++++++ T Consensus 237 ~~~~~~~~a~~~~~~~----~~~~~~~~~~~~a~~la~~L~~~~gv~~~~~~~~t~~v~~~~~~~~~~~~~~l~~~L~~~ 312 (357) T 3lws_A 237 LISLYPYIVSADYYYE----LRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEET 312 (357) T ss_dssp CSCCHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHC T ss_conf 5677999999998988----515777799999999999886479854067999862899994795688999999999849 Q ss_pred CEEEEECCCCCCCCCCEEEEEEC-----CCHHHHHHHHHHHHHHH Q ss_conf 91896161026799985899850-----99799999999999999 Q T0591 362 GVVVTPGTEFSPHTADSVRLNFS-----QDHEAAVAAARRIVTLV 401 (406) Q Consensus 362 gV~v~pG~~Fg~~~~~~iRis~~-----~~~e~l~~al~rl~~~~ 401 (406) ||.+.|+... +.+...+|+++. .+.+++.++++||++++ T Consensus 313 GI~~~~~~~~-~~~~~~~r~~v~~~~~~~~~e~~~~a~~rl~~a~ 356 (357) T 3lws_A 313 GLGFVGYLVD-KDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357) T ss_dssp CEESCSCCEE-CSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC T ss_pred CEEEECCCCC-CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9899653689-9977999996165345667999999999999963 No 75 >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Probab=99.92 E-value=4.7e-23 Score=173.84 Aligned_cols=338 Identities=16% Similarity=0.151 Sum_probs=206.2 Q ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CC-C----------HHHHHHHHHHHHHHCCCCCC Q ss_conf 630378983341567867887888999999999980878888788-88-9----------88999999999986488678 Q T0591 32 RGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY-RG-D----------LGIRDLLAPRLAAFTGAPVD 99 (406) Q Consensus 32 ~~~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~-~G-~----------~~Lr~aia~~~~~~~g~~~~ 99 (406) ...+.-.-||=|.....- ++++.+++++.+.+.... .|+++ .| + .+.|+.+|++ .|. + T Consensus 15 ~~~~~~~~pIYlD~aatt--~~~~~V~~~~~~~l~~~~--~~gNp~s~~h~~~~~a~~~~e~aR~~iA~~----lga--~ 84 (423) T 3lvm_A 15 GVYRAMKLPIYLDYSATT--PVDPRVAEKMMQFMTMDG--TFGNPASRSHRFGWQAEEAVDIARNQIADL----VGA--D 84 (423) T ss_dssp -----CCSSEECBTTTCC--CCCHHHHHHHTTSSSTTS--CCSCTTCTTSHHHHHHHHHHHHHHHHHHHH----HTC--C T ss_pred HHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HCC--C T ss_conf 013324887881473347--899999999999998647--756874045099999999999999999998----199--9 Q ss_pred CCCEEEEECCCCHHHHHHHHHH----HHCCHHHHHHHCCCHHHHHHHH---HHCCEEEEEEECCCCCCCCCCCCCHHHHH Q ss_conf 8670788248727899999999----7200101013105513899999---82996999860446667766677889999 Q T0591 100 ARDGLIITPGTQGALFLAVAAT----VARGDKVAIVQPDYFANRKLVE---FFEGEMVPVQLDYVSADETRAGLDLTGLE 172 (406) Q Consensus 100 ~~~~I~it~G~~~~l~~~~~~l----~~pGd~Vl~~~P~y~~~~~~~~---~~g~~~v~v~~~~~~~~~~~~~~d~~~l~ 172 (406) + ++|++|+|+|+++++++..+ ..+||+|++..+.|++....+. ..|+++..++.+ .+..+|+++++ T Consensus 85 ~-~eI~ft~~~Tealn~~~~~~~~~~~~~gd~vi~~~~eh~s~~~~~~~l~~~G~~v~~v~~~------~~g~id~~~l~ 157 (423) T 3lvm_A 85 P-REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ------RNGIIDLKELE 157 (423) T ss_dssp G-GGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC------TTSCCCHHHHH T ss_pred C-CCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC------CCCEECHHHHH T ss_conf 7-8199979879999999986467426899989995573115799999999779789997789------99808899999 Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCH Q ss_conf 98502540342156664323344378999999998637875784175023556888765223321026786899850400 Q T0591 173 EAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 252 (406) Q Consensus 173 ~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 252 (406) ++++++||+++++.+||+||.+.+ +++|.++|+++|+++++|.++.. +..+..+... .. -+++.|..| T Consensus 158 ~~i~~~T~lv~~~~~sn~tG~i~p---i~~I~~~~~~~g~~~~vDa~q~~----g~~~id~~~~---~~--D~~~~s~hK 225 (423) T 3lvm_A 158 AAMRDDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSV----GKLPIDLSQL---KV--DLMSFSGHK 225 (423) T ss_dssp HHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCTTTS---CC--SEEEEESTT T ss_pred HHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHHHHCCCEEEEECCCCC----CCCCCCCCCC---CC--CCCCCCCCE T ss_conf 757999679999789888720069---99999998553987997354244----8735320101---14--411002300 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHH------HHCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 10463112114332589999999875------2036761-2457999999985652589999999999999999999727 Q T0591 253 TESLSGYRLGVAFGSRAIIARMEKLQ------AIVSLRA-AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGC 325 (406) Q Consensus 253 ~~~~~GlRiG~~~~~~~~i~~l~~~~------~~~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 325 (406) .+|.+| +|+++..++....+.... .....+. ......++...+............+....++.+.+.|.+. T Consensus 226 ~~Gp~G--~G~l~v~~~~~~~~~p~~~gg~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (423) T 3lvm_A 226 IYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI 303 (423) T ss_dssp TTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS T ss_pred ECCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 137897--089998364102577753488886776579854678988999999999878999999999999999874115 Q ss_pred CCCEEECCC--CC-EEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC-----------------CCCEEEEEEC- Q ss_conf 994553588--73-07877668878898999999998689189616102679-----------------9985899850- Q T0591 326 EGVFARTPQ--AG-SYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH-----------------TADSVRLNFS- 384 (406) Q Consensus 326 ~g~~~~~p~--gg-~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-----------------~~~~iRis~~- 384 (406) ......... .. .-+-+.++ ...+..+. ....++.+..|+.+... ..+.||+|++ T Consensus 304 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~---~~~~~i~v~~g~~c~~~~~~~~~vl~~~G~~~~~~~g~vRiS~~~ 378 (423) T 3lvm_A 304 EEVYLNGDLEHGAPNILNVSFN--YVEGESLI---MALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGR 378 (423) T ss_dssp TTEEEESCSTTBCTTEEEEEET--TSCHHHHH---HHTTTEECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCT T ss_pred CCCCCCCCCCCCCCCEEEEECC--CCCHHHHH---HHHCCCEEECCHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCC T ss_conf 6633368734578718999748--99879999---872898898050113886650499997399833369889996689 Q ss_pred -CCHHHHHHHHHHHHHHHHHHC Q ss_conf -997999999999999999856 Q T0591 385 -QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 385 -~~~e~l~~al~rl~~~~~~~r 405 (406) +++|+++..++.|+++++++| T Consensus 379 ~nT~edId~~i~aL~~~v~~lr 400 (423) T 3lvm_A 379 FTTEEEIDYTIELVRKSIGRLR 400 (423) T ss_dssp TCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHH T ss_conf 8999999999999999999998 No 76 >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 Probab=99.92 E-value=1.6e-22 Score=170.30 Aligned_cols=338 Identities=14% Similarity=0.094 Sum_probs=205.1 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 89833415678678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) .+..+||+.-+ ...++|.+++++.++.. +...+|++. ++.+++.+++.+.+|.+ .++++|+|++++... T Consensus 6 ~~~~~~f~sdn--~~~~~P~Vi~A~~~~~~-~~~~~yg~~----~~~~~l~~~la~~~g~~----~~~~ft~sGteAn~~ 74 (356) T 1v72_A 6 RPPALGFSSDN--IAGASPEVAQALVKHSS-GQAGPYGTD----ELTAQVKRKFCEIFERD----VEVFLVPTGTAANAL 74 (356) T ss_dssp CCCCCBCSCGG--GCCCCHHHHHHHHHTTS-SCCCSTTCS----HHHHHHHHHHHHHHTSC----CEEEEESCHHHHHHH T ss_pred CCCEEECCCCC--CCCCCHHHHHHHHHHHC-CCCCCCCCC----HHHHHHHHHHHHHHCCC----CEEEECCCHHHHHHH T ss_conf 98700010688--87779999999999866-487766889----99999999999876999----679989949999999 Q ss_pred HHHHHHHCCHHHHHHHCCCHHHH---HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC------CEE-EECCC Q ss_conf 99999720010101310551389---999982996999860446667766677889999985025------403-42156 Q T0591 117 AVAATVARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARV-FLFSN 186 (406) Q Consensus 117 ~~~~l~~pGd~Vl~~~P~y~~~~---~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~------~k~-i~l~~ 186 (406) ++.+++.+|+.+++..+.+..+. ......+.....+... .....+++.++...... +.. ++.+. T Consensus 75 ai~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (356) T 1v72_A 75 CLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG------PAAKLDIVRLRERTREKVGDVHTTQPACVSIT 148 (356) T ss_dssp HHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC------GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE T ss_pred HHHHHHHCCCCCCCCCCCCEEEECCHHHHHHCCCEEECCCCC------CCCCCCHHHHHHHHCCCCCCCCCCCCEEEECC T ss_conf 999998538865435544237521122322122001012466------43446677753232012323345441343111 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH Q ss_conf 66432334437899999999863787578417502355688876522332102678689985040010463112114332 Q T0591 187 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 266 (406) Q Consensus 187 P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~ 266 (406) .+|+++.+.+.++++++.++|++||+++++|++|..+.+............ . ......+.+..|..+.+ ..++... T Consensus 149 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~--~~~~~~~ 224 (356) T 1v72_A 149 QATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW-K-AGVDALSFGATKNGVLA--AEAIVLF 224 (356) T ss_dssp SSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG-G-GTCCEEEECCGGGTCSS--CEEEEES T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-C-CCCCCEEECCCCCCCCC--CCCCCCC T ss_conf 221123214478765456677765477764010000102332345432113-4-45320230456565314--6654322 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC Q ss_conf 58999999987520367612457999999985652589999999999999999999727994553588730787766887 Q T0591 267 SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL 346 (406) Q Consensus 267 ~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~ 346 (406) .........................++....................+++.+.+.+.+++|+.+..|..++++|+++++ T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~v~~~~~~- 303 (356) T 1v72_A 225 NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS- 303 (356) T ss_dssp SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH- T ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCH- T ss_conf 0676654220134544554411777766677777666543022101367888988763499176058974089998599- Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHCC Q ss_conf 88989999999986891896161026799985899850--9979999999999999998569 Q T0591 347 AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 347 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ra 406 (406) ++++.|+ +.|+.+.++ +.+++++|+++. +++|++++.++.|+++++++|+ T Consensus 304 -----~~~~~L~-~~Gi~v~~~----~~~~~~iR~~~~~~~t~edId~~l~~lk~~~~~~~~ 355 (356) T 1v72_A 304 -----AMIDALL-KAGFGFYHD----RWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRTQE 355 (356) T ss_dssp -----HHHHHHH-HTTCBCBCS----SSSTTEEEEECCTTCCHHHHHHHHHHHHHTC----- T ss_pred -----HHHHHHH-HCCCCCCCC----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf -----9999999-779973133----789997999899989899999999999999999847 No 77 >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, coenzyme A, transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Probab=99.91 E-value=2.8e-22 Score=168.60 Aligned_cols=342 Identities=15% Similarity=0.101 Sum_probs=208.4 Q ss_pred CCC-CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 898-3341567867887888999999999980878888788---889889999999999864886788670788248727 Q T0591 37 EGR-PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 37 ~~~-~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) +|+ .|||+.-++=....+|++++++.+++.+.+ ++|+.+ .|..+..+++++.+...+|. +.+++++++++ T Consensus 43 dG~~~iDf~s~~~LG~~~hP~V~~A~~~~l~~~~-~~~~~sr~~~g~~~~~~~le~~la~~~g~-----~~~~~~~sGt~ 116 (401) T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHG-FGMASVRFICGTQDSHKELEQKLAAFLGM-----EDAILYSSCFD 116 (401) T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHC-SCCCSCHHHHCCBHHHHHHHHHHHHHHTC-----SEEEEESCHHH T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHCC-----CEEEEECCHHH T ss_conf 9989999614686556599999999999999719-77676453558809999999999888699-----86999688999 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---CCCCEEEECCCCCC Q ss_conf 899999999720010101310551389999982996999860446667766677889999985---02540342156664 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF---KAGARVFLFSNPNN 189 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~---~~~~k~i~l~~P~N 189 (406) ++..+++++..+||.|+++.++|..+.......+.+...++. .|++.+++.+ ........+..+.| T Consensus 117 A~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~d~~~~~~~l~~~~~~~~~~~~~~~~~ 185 (401) T 1fc4_A 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-----------NDMQELEARLKEAREAGARHVLIATDG 185 (401) T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-----------TCHHHHHHHHHHHHHTTCSSEEEEEES T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCC-----------CCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 999999984489988997687407899999862897534214-----------877889999875454135146775126 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC-CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHH Q ss_conf 323344378999999998637875784175023556-8887652233210267868998504001046311211433258 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY-AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR 268 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~ 268 (406) |+|...+...+++++++|+++|+++|+||++....+ .+..... .. ....++..++..+++|.++.++ .|++..+. T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~li~Dd~~~~g~~~~g~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~--g~~i~~~~ 261 (401) T 1fc4_A 186 VFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSH-EY-CDVMGRVDIITGTLGKALGGAS--GGYTAARK 261 (401) T ss_dssp EETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHH-HH-TTCTTCCSEEEEESSSTTCSSS--CEEEEECH T ss_pred CCCCCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCCCCCCH-HH-CCCCCCCEEEEECCCCCCCCCC--EEEEECHH T ss_conf 66775755408899999998398899734232394557874300-10-2665641178503445567663--02774137 Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC Q ss_conf 99999998752--0367612457999999985652589999999999999999999727994553588730787766887 Q T0591 269 AIIARMEKLQA--IVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL 346 (406) Q Consensus 269 ~~i~~l~~~~~--~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~ 346 (406) ...+....... ..+...+.....++...++.. ....+..+..++.++.+.+.+... |+....+ .+.++++.+++ T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~a~~aa~~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~-~~~~~~i~~~d- 337 (401) T 1fc4_A 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-EAGSELRDRLWANARQFREQMSAA-GFTLAGA-DHAIIPVMLGD- 337 (401) T ss_dssp HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCS-SSSEEEEEEEC- T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCC-CCCEEEEEECC- T ss_conf 7888743122234678750589999999999767-668999999999999999750506-9622689-98789999598- Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCC-CCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf 8898999999998689189616102-6799985899850--99799999999999999985 Q T0591 347 AVAPAEFVKILRLQAGVVVTPGTEF-SPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 347 ~~~~~~~~~~Ll~~~gV~v~pG~~F-g~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) ..+..++++.|+ ++||.+.|.... .+.+.+.+|++++ .++|+++.+++.|+++++++ T Consensus 338 ~~~a~~l~~~l~-e~Gv~v~~~~~p~v~~g~~~iR~~~~~~~T~edid~~~~al~~v~~el 397 (401) T 1fc4_A 338 AVVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401) T ss_dssp HHHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 789999999999-789789766798778998359997488899999999999999999985 No 78 >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Probab=99.91 E-value=8e-24 Score=179.07 Aligned_cols=306 Identities=13% Similarity=0.114 Sum_probs=191.4 Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHHCCCHHH Q ss_conf 99999980878888788889889999999999864886788670788248727899999999-72001010131055138 Q T0591 60 LFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFAN 138 (406) Q Consensus 60 ~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~P~y~~~ 138 (406) .+.+.+.+ +.+.++| -..+|++.+|+++ |. + ++++++++++|+.++++++ ++|||+|+++.++|+.+ T Consensus 22 ~~~~~~~~-~~~~~G~--~~~~lE~~lA~~~----g~----~-~~i~~~sGt~Al~~al~al~~~~Gd~Vi~~~~~~~~~ 89 (373) T 3frk_A 22 KFEEIYKR-NWFILGD--EDKKFEQEFADYC----NV----N-YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIAT 89 (373) T ss_dssp HHHHHHHH-TCCSSSH--HHHHHHHHHHHHH----TS----S-EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHH T ss_pred HHHHHHHC-CCCCCCH--HHHHHHHHHHHHH----CC----C-EEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHH T ss_conf 99999975-9951498--9999999999986----95----9-7999567999999999981789999899489722889 Q ss_pred HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC Q ss_conf 99999829969998604466677666778899999850254034215666432334437899999999863787578417 Q T0591 139 RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQ 218 (406) Q Consensus 139 ~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De 218 (406) ...+...|++++.++++. ..+.+|++.++++++++++++++ .|++|...+ +++|.++|+++|+++|+|+ T Consensus 90 ~~a~~~~G~~~~~~~v~~-----~~~~~d~~~le~~i~~~t~~v~~---~~~~G~~~d---l~~l~~ia~~~gi~li~D~ 158 (373) T 3frk_A 90 ALAVSYTGAKPIFVEPDI-----RTYNIDPSLIESAITEKTKAIIA---VHLYGQPAD---MDEIKRIAKKYNLKLIEDA 158 (373) T ss_dssp HHHHHHHSCEEEEECEET-----TTTEECGGGTGGGCCTTEEEEEE---ECCTTCCCC---HHHHHHHHHHHTCEEEEEC T ss_pred HHHHHHCCCEEEEEEECC-----CCCCCCHHHHHHHCCCCCEEEEC---CCCCCCCCC---HHHHHHHHHHCCCEEEEEC T ss_conf 999998699899975268-----86778999997543678447732---555466667---9999999997298799976 Q ss_pred CCCCCCC-CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CC--H Q ss_conf 5023556-888765223321026786899850400104631121143325899999998752036----------76--1 Q T0591 219 LYSRLRY-AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVS----------LR--A 285 (406) Q Consensus 219 ~Y~~l~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~----------~~--~ 285 (406) +|+.-.. .+.. . ....+..++..+.+|.++.+|..-++++.++++++.++.++.... .+ . T Consensus 159 a~a~g~~~~~~~-----~--~~~~d~~~~s~~~~K~~~~~g~gG~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 231 (373) T 3frk_A 159 AQAHGSLYKGMK-----V--GSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRL 231 (373) T ss_dssp TTCTTCEETTEE-----T--TSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCC T ss_pred HHHHCCCCCCCC-----C--CCCCCEEEEECCCCEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEECCCCCCCC T ss_conf 012036258810-----1--356647999655984877777726998376999999999852688876322014767786 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE Q ss_conf 24579999999856525899999999999999999997279945535887307877668878898999999998689189 Q T0591 286 AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVV 365 (406) Q Consensus 286 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v 365 (406) +..........++ .+.+..++.+++.+++.+.|.+..+.....+++....|..++-...+..++.+.| +++||.+ T Consensus 232 ~~~~aa~~~~~L~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~ 306 (373) T 3frk_A 232 DELQAGFLRVKLK----YLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSEKRDELQKYL-NNNGIGT 306 (373) T ss_dssp CHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEESSHHHHHHHH-HHTTBCC T ss_pred CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHH-HHCCCCE T ss_conf 7899999999998----7999999999999999985768992236779988434589872365899999999-9679988 Q ss_pred EECCC--------C---CCC-C---------CCEEEEEEC--CCHHHHHHHHHHHHHH Q ss_conf 61610--------2---679-9---------985899850--9979999999999999 Q T0591 366 TPGTE--------F---SPH-T---------ADSVRLNFS--QDHEAAVAAARRIVTL 400 (406) Q Consensus 366 ~pG~~--------F---g~~-~---------~~~iRis~~--~~~e~l~~al~rl~~~ 400 (406) .++.. | +.. + .+.+||.+. .++|+++..++.|+++ T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~l~LP~~~~lt~edid~iie~i~~~ 364 (373) T 3frk_A 307 LIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAW 364 (373) T ss_dssp BCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTC T ss_pred EEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 6206875210756674599889987899998374982489999999999999999999 No 79 >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Probab=99.91 E-value=6.7e-21 Score=159.25 Aligned_cols=332 Identities=17% Similarity=0.160 Sum_probs=208.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHC--- Q ss_conf 99999999980878888788889889999999999864886788670788248727899999999720010101310--- Q T0591 57 AFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQP--- 133 (406) Q Consensus 57 ~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P--- 133 (406) ..+++..++.. +...|+...+..+|++++++++ |. +.++++++++++...++.+++++||.+++..+ T Consensus 57 ~~~~~~a~~~~-gd~~y~~~~~~~~l~~~~a~~~----g~-----e~~~~~~sG~~A~~~a~~~~~~~~~~~~~~~~~~i 126 (467) T 1ax4_A 57 MSDHQWAAMIT-GDEAYAGSRNYYDLKDKAKELF----NY-----DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVF 126 (467) T ss_dssp EEHHHHHHHHT-CCCCSSSCHHHHHHHHHHHHHH----CC-----CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEE T ss_pred HHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHH----CC-----CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 68999997621-5642267823999999999997----99-----96998998599999999999975676089987489 Q ss_pred ----CCHHHHHHHHHHCCEEEEEEECCC----CCCCCCCCCCHHHHHHHHCCC----CEEEECCCCCCCC-CCCCCHHHH Q ss_conf ----551389999982996999860446----667766677889999985025----4034215666432-334437899 Q T0591 134 ----DYFANRKLVEFFEGEMVPVQLDYV----SADETRAGLDLTGLEEAFKAG----ARVFLFSNPNNPA-GVVYSAEEI 200 (406) Q Consensus 134 ----~y~~~~~~~~~~g~~~v~v~~~~~----~~~~~~~~~d~~~l~~~~~~~----~k~i~l~~P~NPT-G~~~s~~~l 200 (406) .|.++...+...|+..+.++.... ..+...+.+|+++|++++++. +.++++++++|.. |.+++.+++ T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 206 (467) T 1ax4_A 127 ISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNL 206 (467) T ss_dssp EESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHH T ss_pred ECCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCCHHHH T ss_conf 54776542179998669803214345556776678877771999999998644876177887305536662353899999 Q ss_pred HHHHHHHHHCCCEEEECCCCCC--CCCC--------CCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHH-- Q ss_conf 9999998637875784175023--5568--------887652233210267868998504001046311211433258-- Q T0591 201 GQIAALAARYGATVIADQLYSR--LRYA--------GASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR-- 268 (406) Q Consensus 201 ~~i~~~a~~~~~~ii~De~Y~~--l~~~--------~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~-- 268 (406) ++|.++|++||+++++|+++.. ..+. +..............+ ++..|++|..+.+| .|+++.+. T Consensus 207 ~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~t~s~~K~~~~~~--gg~l~~~~~~ 282 (467) T 1ax4_A 207 KEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYAD--ALTMSAKKDPLLNI--GGLVAIRDNE 282 (467) T ss_dssp HHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCS--EEEEETTSTTCCSS--CEEEEESSCH T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC--EEEEECCCCCCCCC--CEEEECCCHH T ss_conf 9999999983999999654255424212456710047743023333225577--58995446777787--5078607618 Q ss_pred HHHHHHHHHHHH--CC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEC Q ss_conf 999999987520--36---7612457999999985652589999999999999999999727994553588730787766 Q T0591 269 AIIARMEKLQAI--VS---LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRL 343 (406) Q Consensus 269 ~~i~~l~~~~~~--~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~ 343 (406) ++.+........ .. .+.......++...+... ..++...+...+.+.+.+.|.+. +..+..|.++++++++. T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~l~e~--~~~~~~~~r~~~~~~L~~~L~~~-g~~~~~~~g~~~~~~d~ 359 (467) T 1ax4_A 283 EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG--TEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDC 359 (467) T ss_dssp HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEES T ss_pred HHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEECH T ss_conf 8998753246622157766317899999999986998--76999999999999999999866-99714467763146423 Q ss_pred CCC-------CCCHHHHHHHHHHHCCEEEEECCCCC----C-------CCCCEEEEEEC---CCHHHHHHHHHHHHHHHH Q ss_conf 887-------88989999999986891896161026----7-------99985899850---997999999999999999 Q T0591 344 PKL-------AVAPAEFVKILRLQAGVVVTPGTEFS----P-------HTADSVRLNFS---QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 344 ~~~-------~~~~~~~~~~Ll~~~gV~v~pG~~Fg----~-------~~~~~iRis~~---~~~e~l~~al~rl~~~~~ 402 (406) ... .....+++..|+.+.||.+.++..+. . ...+.+|+++- .+.|+++..++.|.++.+ T Consensus 360 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~e~iD~v~eal~~i~e 439 (467) T 1ax4_A 360 KKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 439 (467) T ss_dssp TTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 34257876545424789999998629078506400345677788756676671588558899999999999999999999 Q ss_pred HHC Q ss_conf 856 Q T0591 403 RYR 405 (406) Q Consensus 403 ~~r 405 (406) +.+ T Consensus 440 ~~~ 442 (467) T 1ax4_A 440 KFA 442 (467) T ss_dssp HHT T ss_pred HHH T ss_conf 998 No 80 >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain closure; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 1tpl_A 2tpl_A* 1c7g_A* Probab=99.90 E-value=7.5e-21 Score=158.93 Aligned_cols=329 Identities=17% Similarity=0.116 Sum_probs=210.8 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHH Q ss_conf 99999999808788887888898899999999998648867886707882487278999999997200101013105513 Q T0591 58 FDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFA 137 (406) Q Consensus 58 ~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~ 137 (406) .+++.+++.. +...|+.......|.+.+++++ |. +.++.+++++.+..++++++++|||.|++.. .|.. T Consensus 57 ~~~~~aa~~~-GDd~Y~~dpt~~~Le~~va~l~----G~-----e~al~~~sGt~An~~a~~~l~~~gd~Vi~~~-~f~~ 125 (456) T 2ez2_A 57 SDKQWAGMMM-GDEAYAGSENFYHLERTVQELF----GF-----KHIVPTHQGRGAENLLSQLAIKPGQYVAGNM-YFTT 125 (456) T ss_dssp CHHHHHHHTT-CCCCSSSCHHHHHHHHHHHHHH----CC-----SEEEEESSHHHHHHHHHHHHCCTTCEEEESS-CCHH T ss_pred CHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHH----CC-----CEEEECCCHHHHHHHHHHHHCCCCCEECCCC-CHHH T ss_conf 6989999871-7843068952999999999986----99-----8699899879999999998258997772672-5588 Q ss_pred HHHHHHHHCCEEEEEEECC----CCCCCCCCCCCHHHHHHHHCC----CCEEEECCCCCCCC-CCCCCHHHHHHHHHHHH Q ss_conf 8999998299699986044----666776667788999998502----54034215666432-33443789999999986 Q T0591 138 NRKLVEFFEGEMVPVQLDY----VSADETRAGLDLTGLEEAFKA----GARVFLFSNPNNPA-GVVYSAEEIGQIAALAA 208 (406) Q Consensus 138 ~~~~~~~~g~~~v~v~~~~----~~~~~~~~~~d~~~l~~~~~~----~~k~i~l~~P~NPT-G~~~s~~~l~~i~~~a~ 208 (406) +...+...|+..+.+..+. .......+.+|+++|++++++ .++++++.++||.. |.+++.+++++|.++|+ T Consensus 126 t~~~i~~~g~~~~~~~~~~~~~~~~~~~~~g~~d~~~l~~~i~~~~~~~~~~v~~~~~~n~~gG~~~~~~~l~~i~~ia~ 205 (456) T 2ez2_A 126 TRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTE 205 (456) T ss_dssp HHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEECCHHHHHHHHHHHH T ss_conf 89999977974898873333256655688888199999998503387623589961011248632079999999999999 Q ss_pred HCCCEEEECCCCCC----------CCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH-HHHHHHHHHH Q ss_conf 37875784175023----------556888765223321026786899850400104631121143325-8999999987 Q T0591 209 RYGATVIADQLYSR----------LRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKL 277 (406) Q Consensus 209 ~~~~~ii~De~Y~~----------l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~-~~~i~~l~~~ 277 (406) +||+.++.|.+... ..|.+.....+........+ ++..|++|.++ |.+.|+++.+ +++.++++.. T Consensus 206 ~~gi~l~~D~ar~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~d--~~s~s~~K~~~--~~~GG~l~~~~~~~~~~~r~~ 281 (456) T 2ez2_A 206 AHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD--GCTMSGKKDCL--VNIGGFLCMNDDEMFSSAKEL 281 (456) T ss_dssp HTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS--EEEEETTTTTC--CSSCEEEEESCHHHHHHHHHH T ss_pred HCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC--EEEEECCCCCC--CCCCEEEEECCHHHHHHHHHH T ss_conf 75986998727764125553035544479867665555404676--89983775534--675217983789999999733 Q ss_pred HHHC----CCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECC----CC-- Q ss_conf 5203----676124579-999999856525899999999999999999997279945535887307877668----87-- Q T0591 278 QAIV----SLRAAGYSQ-AVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP----KL-- 346 (406) Q Consensus 278 ~~~~----~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~----~~-- 346 (406) .... ..+.....+ .+++..+.+... .+...+..++.+.+.+.|.+. |+.+..|.++.++|++.. .. T Consensus 282 ~~~~~g~~~~g~~~~~~~~a~avgl~e~~~--~~~l~~r~~~~~~L~~~L~~~-g~~~v~p~g~~~v~vd~~~~~~~i~~ 358 (456) T 2ez2_A 282 VVVYEGMPSYGGLAGRDMEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHLTQ 358 (456) T ss_dssp HHHHTCCTTTTTCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTSCG T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEEEHHHHCCCCCC T ss_conf 552368763207888899999989988505--999999999999999999856-99611578874356641544589861 Q ss_pred -CCCHHHHHHHHHHHCCEEEEECCCCCC-----------CCCCEEEEEEC--C-CHHHHHHHHHHHHHHHHHH Q ss_conf -889899999999868918961610267-----------99985899850--9-9799999999999999985 Q T0591 347 -AVAPAEFVKILRLQAGVVVTPGTEFSP-----------HTADSVRLNFS--Q-DHEAAVAAARRIVTLVERY 404 (406) Q Consensus 347 -~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-----------~~~~~iRis~~--~-~~e~l~~al~rl~~~~~~~ 404 (406) ......++..|+.+.||...+...+.. ...+.+|+++. . ++++++..++.|.++.++- T Consensus 359 ~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLalpr~~~T~e~IDyVve~l~~v~~~~ 431 (456) T 2ez2_A 359 DEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456) T ss_dssp GGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 1134789999999963943235766656757776777777545179757888899999999999999999728 No 81 >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A Probab=99.90 E-value=6.6e-21 Score=159.30 Aligned_cols=323 Identities=12% Similarity=0.072 Sum_probs=204.9 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHH Q ss_conf 88999999999980878888788---889889999999999864886788670788248727899999999720010101 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEY---RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAI 130 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~---~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~ 130 (406) +|.+.+++.+++..-+. +++-+ .|..++-+++-+.+.+.+|. ++ .++++.++.+...++.+++++||.|++ T Consensus 80 ~p~v~~a~~~a~~~~G~-~~~~sR~~~G~~~~h~eLE~~LA~~~G~----e~-al~~sSG~~An~~ai~al~~~gd~vi~ 153 (427) T 2w8t_A 80 DPDVIAAGKEALEKFGS-GTCGSRMLNGTFHDHMEVEQALRDFYGT----TG-AIVFSTGYMANLGIISTLAGKGEYVIL 153 (427) T ss_dssp CHHHHHHHHHHHHHHCS-CCCSCTTTTCCCHHHHHHHHHHHHHHTC----SE-EEEESCHHHHHHHHHHHHSCTTCEEEE T ss_pred CHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHHHCC----CE-EEEECCHHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999999998388-8877670748829999999999998789----96-999578999999999999726946996 Q ss_pred HHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC----CCCEEEECCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 3105513899999829969998604466677666778899999850----254034215666432334437899999999 Q T0591 131 VQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK----AGARVFLFSNPNNPAGVVYSAEEIGQIAAL 206 (406) Q Consensus 131 ~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~ 206 (406) ..-++......+.+.+.+...++ ..|.+.+++.+. +.++++++....+.+|.+.+ +++|.++ T Consensus 154 d~~~h~s~~~~~~ls~~~~~~~~-----------h~D~~~l~~~l~~~~~~~~~~iv~e~v~s~~G~i~p---l~~l~~l 219 (427) T 2w8t_A 154 DADSHASIYDGCQQGNAEIVRFR-----------HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP---LKEMVAV 219 (427) T ss_dssp ETTCCHHHHHHHHHSCSEEEEEC-----------TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC---HHHHHHH T ss_pred ECCCCHHHHCCCCCCCCCEEEEC-----------CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC---HHHHHHH T ss_conf 26754702216323576169946-----------785789999998443468616872466578776687---9999999 Q ss_pred HHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCH Q ss_conf 863787578417502355688876522332102678689985040010463112114332589999999875-2036761 Q T0591 207 AARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ-AIVSLRA 285 (406) Q Consensus 207 a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~-~~~~~~~ 285 (406) |++||+++++||+++...+. ..-...........+..+++.|+||.++.+| |+++++.++++.++... .+...+. T Consensus 220 ~~~~ga~livDeahs~G~~G-~~g~g~~~~~g~~~~~dii~~t~sKa~g~~G---G~v~g~~~~i~~~~~~~~~~~~s~~ 295 (427) T 2w8t_A 220 AKKHGAMVLVDEAHSMGFFG-PNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHPKFEAVRLACRPYIFTAS 295 (427) T ss_dssp HHHTTCEEEEECTTTTTTSS-TTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCTTGGGGGGTCHHHHSSCC T ss_pred HHHCCCCHHHHHCCCCCCCC-CCCCCCHHHHCCCCCCCEEEECCHHHCCCCC---EEECCCCHHHHHHHHHCCCCEECCC T ss_conf 99749541543320244246-7789848882888655468602410062152---3661562256777760676200578 Q ss_pred HHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CEEEEEECCCCCCCHHHHHHHHHHHCCE Q ss_conf 24579-999999856525899999999999999999997279945535887-3078776688788989999999986891 Q T0591 286 AGYSQ-AVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQA-GSYLFPRLPKLAVAPAEFVKILRLQAGV 363 (406) Q Consensus 286 ~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g-g~~~w~~~~~~~~~~~~~~~~Ll~~~gV 363 (406) ..+.+ .++...++.... ..+.+++++++.+.+.+.|++. |+.+..+.. +-.+-+.+.+ .....+++++|+ ++|| T Consensus 296 ~~p~~~aaa~~aL~~l~~-~~~~~~~L~~~~~~l~~~L~~~-G~~~~~~~~~s~Iv~v~vg~-~~~a~~~~~~L~-e~GI 371 (427) T 2w8t_A 296 LPPSVVATATTSIRKLMT-AHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED-QEQAAMMWQALL-DGGL 371 (427) T ss_dssp CCHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS-HHHHHHHHHHHH-HTTE T ss_pred CCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHH-HCCC T ss_conf 981658999999999864-9999999999999999999965-99768899999879999799-999999999998-3894 Q ss_pred EEEECCCCC-CCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf 896161026-799985899850--99799999999999999985 Q T0591 364 VVTPGTEFS-PHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 364 ~v~pG~~Fg-~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) .+.|...=. +.+...+|+++. .++|+++..++.|+++.+++ T Consensus 372 ~v~~i~yPtvp~g~~rlRi~~sa~hT~edId~~v~~l~~v~k~l 415 (427) T 2w8t_A 372 YVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427) T ss_dssp ECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 18778999889997069998475589999999999999999984 No 82 >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii OT3} Probab=99.90 E-value=5.1e-20 Score=153.32 Aligned_cols=329 Identities=13% Similarity=0.123 Sum_probs=206.7 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE-EEEECCCCHHHHHHHH Q ss_conf 341567867887888999999999980878888788889889999999999864886788670-7882487278999999 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDG-LIITPGTQGALFLAVA 119 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~-I~it~G~~~~l~~~~~ 119 (406) .-|+-| +..-+|.+++++ .....+++++. ...+-+.+.+.+.+..|.+ +++ |++|.|+|++++.++. T Consensus 22 ~lf~pG---P~~v~~~V~~am----~~~~~~hr~~~--f~~~~~~~r~~l~~~l~~~---~~~~ii~~~sgT~~~~a~i~ 89 (386) T 2dr1_A 22 KLFTAG---PVACFPEVLEIM----KVQMFSHRSKE--YRKVHMDTVERLREFLEVE---KGEVLLVPSSGTGIMEASIR 89 (386) T ss_dssp EECCSS---SCCCCHHHHHHT----TSCCCCTTSHH--HHHHHHHHHHHHHHHHTCS---SSEEEEESSCHHHHHHHHHH T ss_pred CCCCCC---CCCCCHHHHHHH----CCCCCCCCCHH--HHHHHHHHHHHHHHHHCCC---CCCEEEEECCHHHHHHHHHH T ss_conf 787389---948879999971----76578879989--9999999999999995979---99889995858999999997 Q ss_pred HHHHCCHHHHHHHCCCHH--HHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH--CCCCEEEECCCCCCCCCCCC Q ss_conf 997200101013105513--89999982996999860446667766677889999985--02540342156664323344 Q T0591 120 ATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF--KAGARVFLFSNPNNPAGVVY 195 (406) Q Consensus 120 ~l~~pGd~Vl~~~P~y~~--~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~--~~~~k~i~l~~P~NPTG~~~ 195 (406) .++.|||+|++....+++ +....+.+|.++..+..+. +...+++++++.. +++++++.++..+|.||... T Consensus 90 ~l~~~g~~vlv~~~g~~~~~~~~~~~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~h~~t~tG~~~ 163 (386) T 2dr1_A 90 NGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP------GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN 163 (386) T ss_dssp HHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT------TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC T ss_pred HHHCCCCCEEEEECHHHCCCCCCCCCHHHHHCCCCCCCC------CCCCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCC T ss_conf 302268745885101211322121100122101234454------43322110012211243200038875312355540 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCC-CCCCCHHHHHHHHHHHHH Q ss_conf 3789999999986378757841750235568887652233210267868998504001046-311211433258999999 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL-SGYRLGVAFGSRAIIARM 274 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~GlRiG~~~~~~~~i~~l 274 (406) + +++|.++|+++|+++++|.+++... .+..+.. .+--+++.|..|.++. +| +|+++..++.+... T Consensus 164 ~---i~~i~~~~~~~g~~~~vDa~qs~g~----~pid~~~-----~~vD~~~~s~~K~l~~p~G--~~~~~~~~~~~~~~ 229 (386) T 2dr1_A 164 P---LPELAKVAKEHDKLVFVDAVSAMGG----ADIKFDK-----WGLDVVFSSSQKAFGVPPG--LAIGAFSERFLEIA 229 (386) T ss_dssp C---HHHHHHHHHHTTCEEEEECTTTBTT----BCCCTTT-----TTCSEEEEETTSTTCCCSS--CEEEEECHHHHHHH T ss_pred C---HHHHHHHHHHCCEEEEEECCCCCCC----CCCCCCC-----CCCCEEECCCCCEECCCCC--EEEEEEEHHHHHHH T ss_conf 2---4989887652331799860102475----6643334-----5641663144412307996--69998625556420 Q ss_pred HH----------------HHH-HCCCC-HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 98----------------752-03676-1245799999998565--2589999999999999999999727994553588 Q T0591 275 EK----------------LQA-IVSLR-AAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 334 (406) Q Consensus 275 ~~----------------~~~-~~~~~-~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 334 (406) .. .+. ....+ ++.....++..+++.. ........++++.+...+.+.+... |+....+. T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~ 308 (386) T 2dr1_A 230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEP 308 (386) T ss_dssp TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCT T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-EEECCCCH T ss_conf 23467754344412204443332345567805666789999999976567778999998755577765313-00003676 Q ss_pred C---CEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHCC Q ss_conf 7---3078776688788989999999986891896161026799985899850--9979999999999999998569 Q T0591 335 A---GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 335 g---g~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ra 406 (406) + ..-+-+.+|+ +.++.++...| +++||.+.+|... ...+.+|+|+. +++++++..++.|+++++++|. T Consensus 309 ~~~s~~v~~~~~p~-g~~~~~l~~~L-~~~gi~i~~G~~~--~~~~~iRis~~~~~t~edi~~lv~~l~~~l~~l~k 381 (386) T 2dr1_A 309 GHESPTITAVLTPP-GIKGDEVYEAM-RKRGFELAKGYGS--VKEKTFRIGHMGYMKFEDIQEMLDNLREVINELKK 381 (386) T ss_dssp TCBCSSEEEEECCT-TCCHHHHHHHH-HHTTEECEECCGG--GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCEEEEECCC-CCCHHHHHHHH-HHCCCEEEECCHH--HCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 65498179996889-99999999999-9789499707664--47987998687749999999999999999999998 No 83 >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Probab=99.90 E-value=7.6e-21 Score=158.88 Aligned_cols=316 Identities=11% Similarity=0.077 Sum_probs=197.9 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 34156786788788899999999998087888878888988999999999986488678867078824872789999999 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAA 120 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~ 120 (406) |++-...|.+ ..+.++++.+.++++. |+..+-..+|.+.+|+++ |. + +.+.++++|+|+.+++++ T Consensus 4 ~~~~~~~~~~---~~~~~~~v~~~l~~~~---~~~G~~~~~~E~~~A~~~----g~----~-~ai~~~sGt~A~~~al~a 68 (390) T 3b8x_A 4 INYPLASSTW---DDLEYKAIQSVLDSKM---FTMGEYVKQYETQFAKTF----GS----K-YAVMVSSGSTANLLMIAA 68 (390) T ss_dssp -CBCSCCCCC---CHHHHHHHHHHHHHTC---CSSCHHHHHHHHHHHHHH----TC----S-EEEEESCHHHHHHHHHHH T ss_pred EECCCCCCCC---CHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHHHH----CC----C-EEEEECCHHHHHHHHHHH T ss_conf 6527899999---9999999999997798---547876999999999987----88----8-599968999999999999 Q ss_pred H-------HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 9-------720010101310551389999982996999860446667766677889999985025403421566643233 Q T0591 121 T-------VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV 193 (406) Q Consensus 121 l-------~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~ 193 (406) + ++|||+|+++.++|......+..+|++++.++++ .+.+.++++.+++.+++++|+++++++ .|. T Consensus 69 l~~~~~~~l~~GD~Vi~~~~~~~~~~~~i~~~G~~~v~~dvd-----~~~~~~~~e~l~~~~~~~t~~v~~~~~---~g~ 140 (390) T 3b8x_A 69 LFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDID-----INTLNIDIESLKEAVTDSTKAILTVNL---LGN 140 (390) T ss_dssp TTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-----TTTCSBCHHHHHHHCCTTEEEEEEECG---GGC T ss_pred HHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCC-----CCCCCCCHHHHHHHCCCCCCCCCCCCC---CCC T ss_conf 875411278998999988986199999999859989997158-----774557999999760245343323346---787 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC-CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH-HHHHHH Q ss_conf 44378999999998637875784175023556-8887652233210267868998504001046311211433-258999 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLRY-AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF-GSRAII 271 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~-~~~~~i 271 (406) .. ++++|.++|++||+++|+|++++...+ .+.+ . ....+..++..+.+|.++ +..-|+++ .++++. T Consensus 141 ~~---dl~~I~~ia~~~gi~li~D~a~a~G~~~~~~~---~----g~~~d~~~~s~~~~K~l~--~~~GG~i~~~~~~l~ 208 (390) T 3b8x_A 141 PN---NFDEINKIIGGRDIILLEDNCESMGATFNNKC---A----GTFGLMGTFSSFYSNHIA--TMEGGCIVTDDEEIY 208 (390) T ss_dssp CC---CHHHHHHHHTTSCCEEEEECTTCTTCEETTEE---T----TSSSSEEEEECCTTSSSC--SSSCEEEEESCHHHH T ss_pred CC---CHHHHHHHHHHCCCCEEEECHHHCCCCCCCEE---C----CCCCCEEEEEEECCCCCC--CCCCEEEEECCHHHH T ss_conf 33---79999999997699789444433056358804---2----467642678863577676--788128981899999 Q ss_pred HHHHHHHHHCCC-------------------------------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999987520367-------------------------------6124579999999856525899999999999999999 Q T0591 272 ARMEKLQAIVSL-------------------------------RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 272 ~~l~~~~~~~~~-------------------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~ 320 (406) +.++.++..... ..+.+ +.+. .+.. .+.+.+..++.+++.+.+.+ T Consensus 209 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~aa~--~~~~-l~~l~~~~~~r~~~a~~~~~ 284 (390) T 3b8x_A 209 HILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEM-SGAI--GIEQ-LKKLPRFISVRRKNAEYFLD 284 (390) T ss_dssp HHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHH-HHHH--HHHH-HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHEEEECCCCCCCCCHH-HHHH--HHHH-HCCCHHHHHHHHHHHHHHHH T ss_conf 999998857967665433443333442011121022113734687999-9999--9986-15567999999999999999 Q ss_pred HHHHCCCCEEECCCC--C--EE-EEEECCCCCCCHHHHHHHHHHHCCEEEEECC---CC---------C--CCC------ Q ss_conf 997279945535887--3--07-8776688788989999999986891896161---02---------6--799------ Q T0591 321 VLRGCEGVFARTPQA--G--SY-LFPRLPKLAVAPAEFVKILRLQAGVVVTPGT---EF---------S--PHT------ 375 (406) Q Consensus 321 ~L~~~~g~~~~~p~g--g--~~-~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~---~F---------g--~~~------ 375 (406) .|++++++.+..+.+ . .| +++..+ .+.+..++.+.| ++.||.+.|.. .+ + ..+ T Consensus 285 ~L~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~a~ 362 (390) T 3b8x_A 285 KFKDHPYLDVQQETGESSWFGFSFIIKKD-SGVIRKQLVENL-NSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAE 362 (390) T ss_dssp HHTTCSSEEECCCCSBCCCCEEEEEECTT-SCCCHHHHHHHH-HHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHH T ss_pred HHHCCCCCCCCCCCCCCEEEEEEEEECCC-CCCCHHHHHHHH-HHCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCHHHH T ss_conf 96179982057899986148999998378-887899999999-9779967754677454356678742877778997999 Q ss_pred ---CCEEEEEEC--CCHHHHHHHHHHH Q ss_conf ---985899850--9979999999999 Q T0591 376 ---ADSVRLNFS--QDHEAAVAAARRI 397 (406) Q Consensus 376 ---~~~iRis~~--~~~e~l~~al~rl 397 (406) .+.+||.+- .++|+++..++.| T Consensus 363 ~l~~~~l~lp~h~~~t~edid~i~~~l 389 (390) T 3b8x_A 363 YLDKNGLFVGNHQIELFDEIDYLREVL 389 (390) T ss_dssp HHHHHEEEEECCSSCCHHHHHHHHHHT T ss_pred HHHHCEEEEECCCCCCHHHHHHHHHHH T ss_conf 997196982189999999999999973 No 84 >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Probab=99.89 E-value=1.8e-20 Score=156.31 Aligned_cols=340 Identities=15% Similarity=0.139 Sum_probs=206.6 Q ss_pred HHHHHHHHCC-CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-------CCHHHHHHHHHHHHHHCCCCC Q ss_conf 9999963037-89833415678678878889999999999808788887888-------898899999999998648867 Q T0591 27 LEALIRGAPI-EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR-------GDLGIRDLLAPRLAAFTGAPV 98 (406) Q Consensus 27 ~~~~~~~~~~-~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~-------G~~~Lr~aia~~~~~~~g~~~ 98 (406) +..+-...|. ....+-|..+.- ..++..+++++.+.+.......++... -..+.|+.+++++ |. T Consensus 13 ~~~~R~~fP~l~~~~~yld~a~~--~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~e~~R~~ia~ll----ga-- 84 (406) T 3cai_A 13 VARVRGLHPSLGDGWVHFDAPAG--MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----NA-- 84 (406) T ss_dssp HHHHHHTCTTTTSSCEECBGGGC--CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----TC-- T ss_pred HHHHHHHCCCCCCCCEEEECCCC--CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----CC-- T ss_conf 99999658368999387448532--58999999999999986699976637999999999999999999980----91-- Q ss_pred CCCCEEEEECCCCHHHHHHHHHH---HHCCHHHHHHHCCCHHH----HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH Q ss_conf 88670788248727899999999---72001010131055138----999998299699986044666776667788999 Q T0591 99 DARDGLIITPGTQGALFLAVAAT---VARGDKVAIVQPDYFAN----RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGL 171 (406) Q Consensus 99 ~~~~~I~it~G~~~~l~~~~~~l---~~pGd~Vl~~~P~y~~~----~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l 171 (406) ++ ++|++++++++++.+++.++ ..+||+|++..-.|++. ....+..|++++.++.+. +.+..|++++ T Consensus 85 ~~-~~i~f~~~~t~~l~~v~~~~~~~~~~gd~Vi~~~~e~~s~~~~~~~~~~~~G~~~~~v~~~~-----~~~~~d~~~l 158 (406) T 3cai_A 85 DP-GGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-----ETGELPTWQW 158 (406) T ss_dssp CG-GGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-----TTCCCCGGGH T ss_pred CC-CCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECC-----CCCCCCHHHH T ss_conf 95-55899189579999999874322599898999157002422089999986295589984156-----5587799999 Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECC Q ss_conf 99850254034215666432334437899999999863787578417502355688876522332102678689985040 Q T0591 172 EEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 251 (406) Q Consensus 172 ~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~S 251 (406) +++++++||+++++.++|+||..++ +++|+++|+++|+++++|.+++. +..+..+... ..+ +++.|.. T Consensus 159 ~~~i~~~t~lv~i~~v~~~tG~~~~---i~~I~~~a~~~g~~~~vD~aqa~----g~~~id~~~~---~~D--~~~~s~h 226 (406) T 3cai_A 159 ESLISKSTRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA----PYRLLDIRET---DAD--VVTVNAH 226 (406) T ss_dssp HHHCCTTEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT----TTCCCCHHHH---CCS--EEEEEGG T ss_pred HHHHCCCCEEEEEECCCCCCCEECC---HHHHHHHHHHCCCCCCEEHHHHC----CCCCCCCCCC---CCC--EEEECCC T ss_conf 9984589529984135567620056---99999887534633120623314----6766544443---352--7972165 Q ss_pred HHCCCCCCCCH-HHHHHHHHHHHHHHHHH--------HCCCCHHHHHHHH----HHHHHHCC--------CH----HHHH Q ss_conf 01046311211-43325899999998752--------0367612457999----99998565--------25----8999 Q T0591 252 KTESLSGYRLG-VAFGSRAIIARMEKLQA--------IVSLRAAGYSQAV----LRGWFDEA--------PG----WMED 306 (406) Q Consensus 252 K~~~~~GlRiG-~~~~~~~~i~~l~~~~~--------~~~~~~~~~~q~a----~~~~l~~~--------~~----~~~~ 306 (406) |.++ |+ .| .++..++++..+..... ....+++...+.+ ...++... .. -.+. T Consensus 227 K~~g-p~--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~gt~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 303 (406) T 3cai_A 227 AWGG-PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQS 303 (406) T ss_dssp GGTS-CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHH T ss_pred CCCC-CC--EEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4158-97--37999975788522202565655678543215754410164489999999997798876678876668999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECC---CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCC------CC-CCC Q ss_conf 999999999999999972799455358---87307877668878898999999998689189616102------67-999 Q T0591 307 RIARHQAIRDELLHVLRGCEGVFARTP---QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEF------SP-HTA 376 (406) Q Consensus 307 ~~~~~~~~r~~l~~~L~~~~g~~~~~p---~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F------g~-~~~ 376 (406) ..++.++..+.+.+.|.+++++++..+ .++... +.++ +.+..++...| .+.||.+..+..+ |. ..+ T Consensus 304 i~~~~~~L~~~l~~~L~~i~~v~l~~~~~~r~~~vs-f~~~--~~~~~~v~~~L-~~~gi~~~~~~~~~~~~~lg~~~~~ 379 (406) T 3cai_A 304 ADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVS-FAVH--KVPADRVVQRL-ADNGILAIANTGSRVLDVLGVNDVG 379 (406) T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEE-EEET--TBCHHHHHHHH-HHTTEECEECCSCHHHHHHTTTTTT T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEE-EEEC--CCCHHHHHHHH-HHCCCEEEECCHHHHHHHCCCCCCC T ss_conf 998877777788865322563699578554656799-9838--93999999999-7779999928476899974999989 Q ss_pred CEEEEEEC--CCHHHHHHHHHHHHH Q ss_conf 85899850--997999999999999 Q T0591 377 DSVRLNFS--QDHEAAVAAARRIVT 399 (406) Q Consensus 377 ~~iRis~~--~~~e~l~~al~rl~~ 399 (406) +.+|+|+. +++++++..++.|++ T Consensus 380 g~vRiS~~~ynt~~dId~li~aL~~ 404 (406) T 3cai_A 380 GAVTVGLAHYSTMAEVDQLVRALAS 404 (406) T ss_dssp CCEEEECCTTCCHHHHHHHHHHHHT T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 8899975898999999999999986 No 85 >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Probab=99.89 E-value=1.2e-19 Score=150.90 Aligned_cols=334 Identities=13% Similarity=0.109 Sum_probs=213.5 Q ss_pred CEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 334156786-7887888999999999980878888788---889889999999999864886788670788248727899 Q T0591 40 PVDFSHGDV-DAHEPTPGAFDLFSAGVQSGGVQAYTEY---RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 40 ~i~ls~G~p-d~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) .++|+.-+- .+. -+|.+.+++.+++..-+.. ++.+ .|...+-+.+-+.+...+|. + ..++.+.+..+.. T Consensus 45 ~l~F~sndYLGL~-~~p~v~~a~~~a~~~~G~~-~~~Sr~~~G~~~~~~~lE~~la~~~g~----e-~al~~~SG~~An~ 117 (398) T 3a2b_A 45 VLMFGSNSYLGLT-TDTRIIKAAQDALEKYGTG-CAGSRFLNGTLDIHVELEEKLSAYVGK----E-AAILFSTGFQSNL 117 (398) T ss_dssp EEECSCSCTTCGG-GCHHHHHHHHHHHHHHCSC-CCSBTTTTCCCHHHHHHHHHHHHHHTC----S-EEEEESSHHHHHH T ss_pred EEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCC-CCCCCEECCCHHHHHHHHHHHHHHHCC----C-CEEEEECCHHHHH T ss_conf 9998653413678-9999999999999985899-875844305859999999999998599----8-2798613223345 Q ss_pred HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC----CCCEEEECCCCCCCC Q ss_conf 9999997200101013105513899999829969998604466677666778899999850----254034215666432 Q T0591 116 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK----AGARVFLFSNPNNPA 191 (406) Q Consensus 116 ~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~P~NPT 191 (406) .++.++++++|.|+...-.+......+.+.+.+.+... .-|.+.+++.++ ++.++++.....+-+ T Consensus 118 ~~i~~l~~~~d~v~~D~~~H~si~~g~~~s~~~~~~~~-----------h~d~~~l~~~l~~~~~~~~~~iv~egv~Sm~ 186 (398) T 3a2b_A 118 GPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYG-----------HNNMEDLRAKLSRLPEDSAKLICTDGIFSME 186 (398) T ss_dssp HHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEEC-----------TTCHHHHHHHHHTSCSSSCEEEEEESBCTTT T ss_pred HHHHHCCCCCCEEEECHHCCHHHHHHHHHCCCCEEEEC-----------CCCHHHHHHHHHHCCCCCCCEEEECCCCCCC T ss_conf 55431156787898610003977502654068535645-----------8887999988532012476058713666898 Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHH Q ss_conf 33443789999999986378757841750235568887652233210267868998504001046311211433258999 Q T0591 192 GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAII 271 (406) Q Consensus 192 G~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i 271 (406) |.+.+ +++|+++|++||+++++||+|+.-++...-. .+........+..|++.||||.|+..| |+++++.+++ T Consensus 187 G~~ap---L~~l~~L~~~y~~~LivDeAH~~Gv~G~~G~-G~~e~~g~~~~idi~~gtlsKa~g~~G---g~v~g~~~~i 259 (398) T 3a2b_A 187 GDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGA-GTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVI 259 (398) T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHH T ss_pred CCCCC---HHHHHHHHHHHCEEEEEECCCCCCEECCCCC-CHHHHHCCCCCCEEEECCCCCCCCEEE---EEEEECHHHH T ss_conf 87647---9999999997294899734110331147886-669981898886699821224565145---7998268987 Q ss_pred HHHHHHHHH-CCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCC Q ss_conf 999987520-367-612457999999985652589999999999999999999727994553588730787766887889 Q T0591 272 ARMEKLQAI-VSL-RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVA 349 (406) Q Consensus 272 ~~l~~~~~~-~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~ 349 (406) +.++..... ... ..+++...++...++... ...+.+++++++.+.+.+.|.+. |+.+..++.. -+-+.+.+ ... T Consensus 260 ~~l~~~~~~~~~s~~l~p~~~~aa~~al~~~~-~~~~~~~~L~~n~~~~~~~l~~~-g~~~~~~~sp-I~~v~ig~-~~~ 335 (398) T 3a2b_A 260 DFLKHNARSVMFSASMTPASVASTLKALEIIQ-NEPEHIEKLWKNTDYAKAQLLDH-GFDLGATESP-ILPIFIRS-NEK 335 (398) T ss_dssp HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH-HCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCCSS-EEEEECCC-HHH T ss_pred HHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCC-EEEEEECC-HHH T ss_conf 67675071133147886488899999987620-48999999998888877543203-8886899999-89999898-899 Q ss_pred HHHHHHHHHHHCCEEEEECCCCCCC---CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 8999999998689189616102679---9985899850--997999999999999999856 Q T0591 350 PAEFVKILRLQAGVVVTPGTEFSPH---TADSVRLNFS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 350 ~~~~~~~Ll~~~gV~v~pG~~Fg~~---~~~~iRis~~--~~~e~l~~al~rl~~~~~~~r 405 (406) ..++.+.| .+.||.+.|.. .|. +...+|+++. .+++++++.++.|.++++++. T Consensus 336 ~~~~~~~L-~~~Gi~v~~i~--~PtVp~g~~~lRi~l~a~hT~~dId~l~~~l~~v~~~~~ 393 (398) T 3a2b_A 336 TFWVTKML-QDDGVFVNPVV--SPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398) T ss_dssp HHHHHHHH-HHTTEECEEEC--TTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHH-HHCCEEEEEEC--CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 99999999-97892798888--998899980699998877999999999999999999839 No 86 >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Probab=99.89 E-value=2e-19 Score=149.21 Aligned_cols=317 Identities=17% Similarity=0.171 Sum_probs=204.3 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 88899999999998087888878888-----------9889999999999864886788670788248727899999999 Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRG-----------DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT 121 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G-----------~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l 121 (406) +++.+++++.+.+.+... .+..| ..+.|+.++++ .|.. + +++|++|+|+|++++.++.++ T Consensus 35 ~p~~v~~a~~~~~~~~~~---n~~~~~~~~~~~~~~~~e~~R~~ia~~----l~~~-~-~~~i~f~~~~T~a~n~~~~~~ 105 (406) T 1kmj_A 35 KPSQVIDAEAEFYRHGYA---AVHRGIHTLSAQATEKMENVRKRASLF----INAR-S-AEELVFVRGTTEGINLVANSW 105 (406) T ss_dssp CCHHHHHHHHHHHHHTCC---CCSSCSSHHHHHHHHHHHHHHHHHHHH----TTCS-C-GGGEEEESSHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH----HCCC-C-CCCEEEECCHHHHHHHHHHHH T ss_conf 999999999999986679---876303199999999999999999998----1899-8-430576265789999999632 Q ss_pred ----HHCCHHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf ----720010101310551389999----982996999860446667766677889999985025403421566643233 Q T0591 122 ----VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV 193 (406) Q Consensus 122 ----~~pGd~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~ 193 (406) ..+||+|++..-.|++....+ +..|+++..+|++. +..+|++.++++++++||++.++.-+|.||. T Consensus 106 ~~~~~~~gd~iv~~~~eh~s~~~~~~~~a~~~G~~v~~~p~~~------~g~~~~~~~~~~i~~~t~lv~i~~vsn~~G~ 179 (406) T 1kmj_A 106 GNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP------DGTLQLETLPTLFDEKTRLLAITHVSNVLGT 179 (406) T ss_dssp HHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT------TSCBCGGGHHHHCCTTEEEEEEESBCTTTCC T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCC------CCCCCHHHHHHHCCCCCEEEEEECCCCCCCE T ss_conf 0120478988999706312269999999997496899986699------9848899999745799669999778878750 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 44378999999998637875784175023556888765223321026786899850400104631121143325899999 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIAR 273 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~ 273 (406) ..+ +++|+++|+++|+++++|-+.+- |.-+..+... ..+ +++.|..|.+|-+| +|++...+++.+. T Consensus 180 ~~p---v~~i~~~~~~~g~~~~vDa~q~~----g~~~id~~~~---~~D--~~~~s~hK~~GP~G--~G~l~v~~~~~~~ 245 (406) T 1kmj_A 180 ENP---LAEMITLAHQHGAKVLVDGAQAV----MHHPVDVQAL---DCD--FYVFSGHKLYGPTG--IGILYVKEALLQE 245 (406) T ss_dssp BCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHH---TCS--EEEEEGGGTTSCTT--CEEEEECHHHHHH T ss_pred ECC---HHHHHHHHHHCCCEEEEEECCEE----CEECCCCCCC---CCC--EEEEEHHHCCCCCC--CCCEEECCCHHHH T ss_conf 575---89999999874986999752330----1116862227---987--89980265369997--6130665213630 Q ss_pred HHHHHH---------------------HCCCCHHH-HHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 998752---------------------03676124-579999999856525-8999999999999999999972799455 Q T0591 274 MEKLQA---------------------IVSLRAAG-YSQAVLRGWFDEAPG-WMEDRIARHQAIRDELLHVLRGCEGVFA 330 (406) Q Consensus 274 l~~~~~---------------------~~~~~~~~-~~q~a~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 330 (406) +..... ....+++. +...++...++-... -.++..++.+...+.+.+.+..+++... T Consensus 246 ~~p~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~n~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~~~~~~~~~~ 325 (406) T 1kmj_A 246 MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL 325 (406) T ss_dssp CCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 79611689865664534455545425655277876435999999999999709499999999999999987621896352 Q ss_pred ECCC--CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCC------CCCCEEEEEEC--CCHHHHHHHHHHHHHH Q ss_conf 3588--730787766887889899999999868918961610267------99985899850--9979999999999999 Q T0591 331 RTPQ--AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP------HTADSVRLNFS--QDHEAAVAAARRIVTL 400 (406) Q Consensus 331 ~~p~--gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~------~~~~~iRis~~--~~~e~l~~al~rl~~~ 400 (406) ..|+ ++... +.++ +.++.++... +.++||.+..|+.+.. ..++.+|+|+. ++.|+++..++.|+++ T Consensus 326 ~~~~~~~~ivs-f~~~--~~~~~~v~~~-L~~~gI~v~~G~~ca~~~~~~~~~~g~vRiS~~~ynt~eDid~l~~~l~~i 401 (406) T 1kmj_A 326 YGPQNRLGVIA-FNLG--KHHAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI 401 (406) T ss_dssp ESCTTCCSEEE-EEET--TCCHHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCEEE-EECC--CCCHHHHHHH-HHHCCCEEECCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 58866675799-9738--9899999999-977895997560322567886189978999788989999999999999999 Q ss_pred HH Q ss_conf 99 Q T0591 401 VE 402 (406) Q Consensus 401 ~~ 402 (406) .+ T Consensus 402 ~k 403 (406) T 1kmj_A 402 HR 403 (406) T ss_dssp HH T ss_pred HH T ss_conf 98 No 87 >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Probab=99.88 E-value=2.1e-19 Score=149.17 Aligned_cols=320 Identities=13% Similarity=0.104 Sum_probs=195.0 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCC-CCH----------HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 8889999999999808788887888-898----------89999999999864886788670788248727899999999 Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYR-GDL----------GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT 121 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~-G~~----------~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l 121 (406) +++.+++++.+.+.+. |+++. ++. +.|+.|+++ .|. +| ++|++|+|+|+++++++..+ T Consensus 30 ~~~~v~~a~~~~~~~~----~~Np~s~~~~~~~a~~~ie~aR~~ia~~----lga--~~-~eIvft~~aTea~n~v~~~~ 98 (432) T 3a9z_A 30 LEPEVIQAVTEAMKEA----WGNPSSSYVAGRKAKDIINTARASLAKM----IGG--KP-QDIIFTSGGTESNNLVIHST 98 (432) T ss_dssp CCHHHHHHHHHHHHHC----CSCTTCSSHHHHHHHHHHHHHHHHHHHH----HTC--CG-GGEEEESCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHC----CCCCCCCCHHHHHHHHHHHHHHHHHHHH----HCC--CC-CCEEEECCHHHHHHHHHHHH T ss_conf 9999999999999873----7997642199999999999999999998----199--97-86899088799999999999 Q ss_pred H---------------------HCCHHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC Q ss_conf 7---------------------20010101310551389999----9829969998604466677666778899999850 Q T0591 122 V---------------------ARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 176 (406) Q Consensus 122 ~---------------------~pGd~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~ 176 (406) . .+||+|++..--|++....+ +..|.+++.+|.+ ..+..+|++.++++++ T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~s~~Eh~s~~~~~~~~~~~~g~~v~~~~~~-----~~~g~id~~~l~~~i~ 173 (432) T 3a9z_A 99 VRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVS-----KVNGQVEVEDILAAVR 173 (432) T ss_dssp HHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCC-----TTTSSCCHHHHHHTCC T ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-----CCCCCCCHHHHHHHCC T ss_conf 99875402434431000033237888799815532055579999986287399975643-----7888287999997368 Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----------CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEE Q ss_conf 2540342156664323344378999999998637----------875784175023556888765223321026786899 Q T0591 177 AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY----------GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVT 246 (406) Q Consensus 177 ~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~----------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~ 246 (406) ++|+++.++..||.||...+ +++|+++|+++ ++++++|-++.. |.-+..+... ..+ ++ T Consensus 174 ~~t~lv~~~~vsn~tG~~~p---l~~I~~l~~~~~~~~~~~~~~gi~~~vDaaq~~----g~~~~d~~~~---~~D--~~ 241 (432) T 3a9z_A 174 PTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQAL----GKRRVDVEDL---GVD--FL 241 (432) T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTT----TTSCCCHHHH---CCS--EE T ss_pred CCCEEEEEECCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHC----CCCCCCHHHH---CCC--EE T ss_conf 99528998668878761679---999999998765556650688528997503325----8756577890---898--89 Q ss_pred EEECCHHCCCCCCCCHHHHHHHHHHHHHHHHH------HHCCCCHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 85040010463112114332589999999875------2036761245799-9999985652589999999999999999 Q T0591 247 IMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ------AIVSLRAAGYSQA-VLRGWFDEAPGWMEDRIARHQAIRDELL 319 (406) Q Consensus 247 ~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~------~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~r~~l~ 319 (406) +.|..|.++ ||. .|.++........+.... .....+++.+... ++..+++-....++....+.+..++.+. T Consensus 242 ~~s~hK~~g-p~~-~gl~~~~~~~~~~l~p~~~~g~~~~~~e~GT~n~~~~~~l~~Al~~~~~g~~~i~~~~~~l~~~l~ 319 (432) T 3a9z_A 242 TIVGHKFYG-PRI-GALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319 (432) T ss_dssp EEEGGGTTC-CSC-EEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EECCCEECC-CCC-EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 811655348-982-499997110104578856688766774788855889999999999999889999999999999999 Q ss_pred HHHHHCCCCEEE----CCC----CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC----------------- Q ss_conf 999727994553----588----7307877668878898999999998689189616102679----------------- Q T0591 320 HVLRGCEGVFAR----TPQ----AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH----------------- 374 (406) Q Consensus 320 ~~L~~~~g~~~~----~p~----gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~----------------- 374 (406) +.|....+..+. .+. .+. +-+.++. .+..++. .++..+||.+..|+.+... T Consensus 320 ~~L~~~~~~~i~~~~~~~~~~~~~~i-~~f~~~~--~~~~~~~-~~l~~~gI~v~~G~aC~~~~~~~~s~vL~~~g~~~~ 395 (432) T 3a9z_A 320 ERLEAEFGKRIHLNSRFPGVERLPNT-CNFSIQG--SQLRGYM-VLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVD 395 (432) T ss_dssp HHHHHHHGGGEEESSCCTTCCBCTTE-EEEEECS--TTCCHHH-HHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHH T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCE-EEEEECC--CCHHHHH-HHHCCCCCEEECCHHHCCCCCCCCCHHHHHCCCCHH T ss_conf 99871469589956888654465877-9999679--9989999-983529979977132178998876699997599877 Q ss_pred -CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHCC Q ss_conf -9985899850--9979999999999999998569 Q T0591 375 -TADSVRLNFS--QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 375 -~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ra 406 (406) ..+.||+||. +++++++..++.|++.++++|+ T Consensus 396 ~~~g~vRvS~~~~nt~~dId~li~al~~~v~~L~~ 430 (432) T 3a9z_A 396 VARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432) T ss_dssp HHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 81978999768999999999999999999998669 No 88 >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase, transferase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Probab=99.87 E-value=9.7e-19 Score=144.64 Aligned_cols=324 Identities=13% Similarity=0.087 Sum_probs=206.0 Q ss_pred CEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCH----HHHHHHHHHHHHHCCCCCCCCCEEEEECCCC Q ss_conf 334156786-78878889999999999808788887---888898----8999999999986488678867078824872 Q T0591 40 PVDFSHGDV-DAHEPTPGAFDLFSAGVQSGGVQAYT---EYRGDL----GIRDLLAPRLAAFTGAPVDARDGLIITPGTQ 111 (406) Q Consensus 40 ~i~ls~G~p-d~~~p~~~~~~~~~~~~~~~~~~~Y~---~~~G~~----~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~ 111 (406) .+||+.-+- .+ .-+|.+.+++.+++.+-+.. .+ -..|.. +|-+.+|+| +|. + ..++.+.+. T Consensus 41 ~~~f~s~dYLGL-~~~p~v~~a~~~a~~~~G~~-~~~sr~~~g~~~~~~~LE~~lA~~----~g~----e-~al~~~SG~ 109 (384) T 1bs0_A 41 YLNFSSNDYLGL-SHHPQIIRAWQQGAEQFGIG-SGGSGHVSGYSVVHQALEEELAEW----LGY----S-RALLFISGF 109 (384) T ss_dssp EEECSCCCTTSG-GGCHHHHHHHHHHHHHHCSC-CCSBTTTTCCCHHHHHHHHHHHHH----HTC----S-EEEEESCHH T ss_pred EEEEECCCCCCC-CCCHHHHHHHHHHHHHHCCC-CCCCCHHCCCHHHHHHHHHHHHHH----HCC----C-CEEEECCCC T ss_conf 999876541355-78989999999999983898-765320126619999999999998----399----8-389960540 Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---CCCCEEEECCCCC Q ss_conf 7899999999720010101310551389999982996999860446667766677889999985---0254034215666 Q T0591 112 GALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF---KAGARVFLFSNPN 188 (406) Q Consensus 112 ~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~---~~~~k~i~l~~P~ 188 (406) .+...++.+++.++|.|++..-.+......++..+.+.+..+ ..|++.+++.+ .++++++++.... T Consensus 110 ~an~~~~~al~~~~~~i~~d~~~h~s~~~g~~~~~~~~~~~~-----------hnd~~~le~~l~~~~~~~~~iv~e~v~ 178 (384) T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFA-----------HNDVTHLARLLASPCPGQQMVVTEGVF 178 (384) T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEEC-----------TTCHHHHHHHHHSCCSSCEEEEEESBC T ss_pred HHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCEEEEEC-----------CCCHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 357899999725787210332004999863522786289957-----------898999998754038997699981898 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHH Q ss_conf 43233443789999999986378757841750235568887652233210267868998504001046311211433258 Q T0591 189 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR 268 (406) Q Consensus 189 NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~ 268 (406) |.+|.+.+ +++|+++|++|++++++||+|+...+...-.. ..... .....|++.|+||.++.+| |+++++. T Consensus 179 sm~G~i~p---l~~l~~l~~~y~~~livDeAh~~gv~G~~g~G-~~~~~--~~~~~i~~~t~~ka~g~~g---g~v~~~~ 249 (384) T 1bs0_A 179 SMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG-SCWLQ--KVKPELLVVTFGKGFGVSG---AAVLCSS 249 (384) T ss_dssp TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCC-HHHHT--TCCCSEEEEESSSTTSSCC---EEEEECH T ss_pred CCCCCCCC---HHHHHHHHHHCCCEEEEECCCEECEECCCCCC-CHHHH--CCCEEEEECCHHHHCCCCC---CEEECCC T ss_conf 88887416---99999999975978998343111003688876-08770--8730466435544056666---6043451 Q ss_pred HHHHHHHHHH-HHCCCCHHHHHHH-HHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCC Q ss_conf 9999999875-2036761245799-999998565-258999999999999999999972799455358873078776688 Q T0591 269 AIIARMEKLQ-AIVSLRAAGYSQA-VLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK 345 (406) Q Consensus 269 ~~i~~l~~~~-~~~~~~~~~~~q~-a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~ 345 (406) ++++.+.... ......+.++... ++.+.++-. .....+.+++++++...+.+.|.++ |+.+...+ +..+-+.+.+ T Consensus 250 ~~~~~l~~~~~~~~~s~~~~p~~~aa~~~al~~l~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~-s~I~~v~~g~ 327 (384) T 1bs0_A 250 TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLADSC-SAIQPLIVGD 327 (384) T ss_dssp HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCC-SSBCCEEEES T ss_pred HHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC-CCEEEEEECC T ss_conf 347999871535554347438999999999999984605678989999999998767753-98657999-8879999798 Q ss_pred CCCCHHHHHHHHHHHCCEEEEECCCCCC---CCCCEEEEEEC--CCHHHHHHHHHHHHHH Q ss_conf 7889899999999868918961610267---99985899850--9979999999999999 Q T0591 346 LAVAPAEFVKILRLQAGVVVTPGTEFSP---HTADSVRLNFS--QDHEAAVAAARRIVTL 400 (406) Q Consensus 346 ~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~~~~~iRis~~--~~~e~l~~al~rl~~~ 400 (406) .....++.+.|+ ++||.+.|-. | | .+..-+|+++. .++|++++.++-|... T Consensus 328 -~~~a~~~~~~L~-~~Gi~v~~i~-~-PtVp~g~~~lRi~i~a~ht~edId~l~~~L~~~ 383 (384) T 1bs0_A 328 -NSRALQLAEKLR-QQGCWVTAIR-P-PTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384) T ss_dssp -HHHHHHHHHHHH-HTTEECCEEC-T-TSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHHHH-HCCEEEEEEC-C-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC T ss_conf -899999999999-7790699976-8-978999845999978779999999999999864 No 89 >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Probab=99.87 E-value=6.6e-19 Score=145.76 Aligned_cols=322 Identities=14% Similarity=0.140 Sum_probs=205.0 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHC Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999720010101310 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQP 133 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P 133 (406) ++.++++ +.....+++++. ..++-+.+.+.+.+..|.+ ..+.|+++.|+|.++..++..++.+||+|++..- T Consensus 31 ~~~V~~a----m~~~~~~hr~~~--f~~~~~~~r~~l~~ll~~~--~~~~i~~~gsgT~a~~a~~~~~~~~g~~vl~~~~ 102 (393) T 2huf_A 31 PQRVLDA----MSRPILGHLHPE--TLKIMDDIKEGVRYLFQTN--NIATFCLSASGHGGMEATLCNLLEDGDVILIGHT 102 (393) T ss_dssp CHHHHHH----TTSCCCCTTSHH--HHHHHHHHHHHHHHHHTCC--CSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEES T ss_pred CHHHHHH----HCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCC--CCCEEEEECCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999997----476778878899--9999999999999995999--9868999282899999999983689998999607 Q ss_pred CCHHH--HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 55138--999998299699986044666776667788999998-502540342156664323344378999999998637 Q T0591 134 DYFAN--RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA-FKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY 210 (406) Q Consensus 134 ~y~~~--~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~-~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~ 210 (406) .+.+. ...++..|..++.++.+. +..+|+++++++ .+++++++.++.-+|.||...+ +++|.++|+++ T Consensus 103 g~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~V~i~h~~t~tG~i~p---i~~I~~~~~~~ 173 (393) T 2huf_A 103 GHWGDRSADMATRYGADVRVVKSKV------GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG---LEGVGALCHQH 173 (393) T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT T ss_pred CHHHHHHHHHHHHHCCEEEEEECCC------CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---HHHHHHHHHHC T ss_conf 6288899999998399157630378------88658799999863389649999876777654278---99999999866 Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHC-CCCCCCCHHHHHHHHHHHHHHHHHHH--------- Q ss_conf 87578417502355688876522332102678689985040010-46311211433258999999987520--------- Q T0591 211 GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGSRAIIARMEKLQAI--------- 280 (406) Q Consensus 211 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~~~~~~~i~~l~~~~~~--------- 280 (406) |+++++|.+.+.- ..+-.+... .--+++.|-.|.+ +.+| +|+++..++.++.+...... T Consensus 174 g~~~~vDa~qs~g----~~pid~~~~-----g~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (393) T 2huf_A 174 NCLLIVDTVASLG----GAPMFMDRW-----EIDAMYTGSQKVLGAPPG--ITPVSFSHRAVERYKRRNTKVKVYYWDMS 242 (393) T ss_dssp TCEEEEECTTTBT----TBCCCTTTT-----TCSEEECCSSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHH T ss_pred CCEEEEECCHHCC----CCCCCHHCC-----CCCEEEECCCCCCCCCCC--EEEECCCHHHHHHHHCCCCCCCCCCCCHH T ss_conf 9769987532116----753232115-----773686035542579982--55420388999876304876530132066 Q ss_pred -------------CCCCHHHHH-HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC--CCEEEEEEC Q ss_conf -------------367612457-99999998565-2589999999999999999999727994553588--730787766 Q T0591 281 -------------VSLRAAGYS-QAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ--AGSYLFPRL 343 (406) Q Consensus 281 -------------~~~~~~~~~-q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~--gg~~~w~~~ 343 (406) ...+++... ..+....+... ..-++...+++++..+.+.+.|.++....+..|+ ...-+.+.+ T Consensus 243 ~~~~~~~~~~~~~~~~~t~~~~~~~~l~~a~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~ 322 (393) T 2huf_A 243 LVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKV 322 (393) T ss_dssp HHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEEC T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHCCCEEEEEEC T ss_conf 65320013578875564451679999999999999616999999999999999999996698433595770872899989 Q ss_pred CCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE-EC--CCHHHHHHHHHHHHHHHHHHCC Q ss_conf 887889899999999868918961610267999858998-50--9979999999999999998569 Q T0591 344 PKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN-FS--QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 344 ~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-~~--~~~e~l~~al~rl~~~~~~~ra 406 (406) |+ +.+..++...|+++++|.+..|.. ....+.+|+| ++ .++|+++..++.|+++++++|. T Consensus 323 p~-g~~~~~~~~~l~~~~~i~v~~g~~--~~~~~~~Ris~~G~~~t~edid~li~al~e~l~~l~~ 385 (393) T 2huf_A 323 PQ-GVDWLKAAQYAMKTYLVEISGGLG--PTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393) T ss_dssp CT-TCCHHHHHHHHHHHHCEECBCCCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC T ss_pred CC-CCCHHHHHHHHHHCCCEEEECCCC--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 99-999999999998549999976671--1029989983787779999999999999999998488 No 90 >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Probab=99.86 E-value=1.2e-17 Score=137.24 Aligned_cols=324 Identities=15% Similarity=0.181 Sum_probs=209.3 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCC-H------HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH---- Q ss_conf 888999999999980878888788889-8------89999999999864886788670788248727899999999---- Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRGD-L------GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT---- 121 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~-~------~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l---- 121 (406) ++..+++++.+.+..... .+..|. . ++.+...+.+.+..|.+ .+++|++++++++++.+++..+ T Consensus 40 ~p~~v~~~~~~~~~~~~~---n~~~~~~~~~~~~~~~~e~aR~~ia~~lga~--~~~~ii~~~~tt~a~~~~~~~~~~~~ 114 (420) T 1t3i_A 40 KPRAVLEKLMHYYENDNA---NVHRGAHQLSVRATDAYEAVRNKVAKFINAR--SPREIVYTRNATEAINLVAYSWGMNN 114 (420) T ss_dssp CCHHHHHHHHHHHHHTCC---CC--CCSHHHHHHHHHHHHHHHHHHHHTTCS--CGGGEEEESSHHHHHHHHHHHTHHHH T ss_pred CCHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCEEEECCCHHHHHHHHHHCCCCC T ss_conf 999999999999986689---8762251999999999999999999970979--84356985261789999986400012 Q ss_pred HHCCHHHHHHHCCCHHH----HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 72001010131055138----99999829969998604466677666778899999850254034215666432334437 Q T0591 122 VARGDKVAIVQPDYFAN----RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 122 ~~pGd~Vl~~~P~y~~~----~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) ..+||+|++..-.|++. ....+..|+++..+|.+. ....+.+.+++.++++|+++.++.-+|-||..++ T Consensus 115 ~~~g~~i~~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~------~~~~~~~~l~~~i~~~t~lv~i~~~~~~~G~~~p- 187 (420) T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE------QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP- 187 (420) T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT------TSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC- T ss_pred CCCCCEEEECCCCCCCEEEHHHHHHCCCCCEEEEECCCC------CCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCH- T ss_conf 689986771035550101104332202682577531212------2310498874402789569999712456543580- Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89999999986378757841750235568887652233210267868998504001046311211433258999999987 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 277 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~ 277 (406) +++|.++|+++|+++++|-+.+- |.-+..+... ..+ +++.|..|.+|-+| +|+++..+++...+... T Consensus 188 --~~~i~~~~~~~g~~~~vDaaq~~----g~~~ld~~~~---~~D--~~~~s~hK~~gp~G--~g~l~v~~~~~~~~~p~ 254 (420) T 1t3i_A 188 --AEEIAQLAHQAGAKVLVDACQSA----PHYPLDVQLI---DCD--WLVASGHKMCAPTG--IGFLYGKEEILEAMPPF 254 (420) T ss_dssp --HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHH---TCS--EEEEEGGGTTSCTT--CEEEEECHHHHHHSCCC T ss_pred --HHHHHHHHHCCCCCEEEEEEEEE----EEEEECCCCC---CCC--EEECCCCCCCCCCC--CCCEEEEHHHHHCCCCC T ss_conf --88888887505863687521130----0676422246---875--46423544558985--32400100134228853 Q ss_pred HH--------------------HCCCCHHHHH-HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC- Q ss_conf 52--------------------0367612457-9999999856525-89999999999999999999727994553588- Q T0591 278 QA--------------------IVSLRAAGYS-QAVLRGWFDEAPG-WMEDRIARHQAIRDELLHVLRGCEGVFARTPQ- 334 (406) Q Consensus 278 ~~--------------------~~~~~~~~~~-q~a~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~- 334 (406) .. ....++..+. ..++...++...+ -.++...+.....+.+.+.+.+.+++....|. T Consensus 255 ~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 334 (420) T 1t3i_A 255 FGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNP 334 (420) T ss_dssp SCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCG T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 27865555544555546774343247857899999999999999970879999999988899987640021113435775 Q ss_pred -----CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCC------CCCCEEEEEEC--CCHHHHHHHHHHHHHHH Q ss_conf -----730787766887889899999999868918961610267------99985899850--99799999999999999 Q T0591 335 -----AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP------HTADSVRLNFS--QDHEAAVAAARRIVTLV 401 (406) Q Consensus 335 -----gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~------~~~~~iRis~~--~~~e~l~~al~rl~~~~ 401 (406) ++. +-+.++ +.++.++...| .++||.+..|+.|.. ..++++|+|+. +++++++..++.|++.+ T Consensus 335 ~~~~~~~i-v~f~~~--~~~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRvS~~~ynt~~Did~lv~~L~~~l 410 (420) T 1t3i_A 335 KHGDRAAL-ASFNVA--GLHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420) T ss_dssp GGSCBCSE-EEEEET--TBCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH T ss_pred CCCCCCEE-EEEEEC--CCCHHHHHHHH-HHCCCEEECCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 44675418-999969--98999999999-669969966743255878860689629997989999999999999999999 Q ss_pred HHHC Q ss_conf 9856 Q T0591 402 ERYR 405 (406) Q Consensus 402 ~~~r 405 (406) +.++ T Consensus 411 ~~~~ 414 (420) T 1t3i_A 411 RFFS 414 (420) T ss_dssp HHTC T ss_pred HHHH T ss_conf 9963 No 91 >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Probab=99.85 E-value=1.2e-17 Score=137.28 Aligned_cols=324 Identities=15% Similarity=0.156 Sum_probs=202.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCC--CCC--HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-H Q ss_conf 67887888999999999980878888788--889--889999999999864886788670788248727899999999-7 Q T0591 48 VDAHEPTPGAFDLFSAGVQSGGVQAYTEY--RGD--LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-V 122 (406) Q Consensus 48 pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~--~G~--~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~ 122 (406) |..+.......+++.+.+.++....++.. .|- .++-+++|+++ |.. ..+.++.+|.||.+++.++ + T Consensus 9 p~~P~~~~~~~~~v~~~l~sg~~~~~~~~~~~g~~~~~fE~~~a~~~----g~k-----~ai~~~sgT~Al~lal~~l~~ 79 (418) T 2c81_A 9 PEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN----GVP-----YCVPTTSGSTALMLALEALGI 79 (418) T ss_dssp CCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH----TCS-----EEEEESCHHHHHHHHHHHTTC T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CCC-----EEEEECCHHHHHHHHHHHCCC T ss_conf 88999899999999999970980034740588979999999999987----979-----599976889999999998598 Q ss_pred HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHH Q ss_conf 20010101310551389999982996999860446667766677889999985025403421566643233443789999 Q T0591 123 ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQ 202 (406) Q Consensus 123 ~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~ 202 (406) .+||+|+++..+|.+....+...|++++.+.++ ++.+.+|++.+++.++++|++++++ |..|.... +++ T Consensus 80 ~~gdeVi~p~~t~~a~~~~i~~~g~~pv~~Di~-----~~~~~~~~~~~~~~~~~~t~ai~~v---~~~G~~~d---~~~ 148 (418) T 2c81_A 80 GEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-----ADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDE 148 (418) T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-----TTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHH T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHHHCCCCCCCCCEEE---ECCCCCCH---HHH T ss_conf 984999969976665102221233332223433-----2212355202332125530121345---31765215---999 Q ss_pred HHHHHHHCCCEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHHHHHHHHHH Q ss_conf 9999863787578417502355-688876522332102678689985040010463112114332-58999999987520 Q T0591 203 IAALAARYGATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEKLQAI 280 (406) Q Consensus 203 i~~~a~~~~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~ 280 (406) |.++|++||++||+|.+++... +++.... ...+ +.++||+..-.+++-.-|.++. ++++.+.++.++.. T Consensus 149 I~~ia~k~~i~vIeDaa~a~g~~~~~~~~g-------~~gd--~~~fSf~~~K~i~~geGG~i~t~d~~l~~~~~~lr~~ 219 (418) T 2c81_A 149 INEIAQEHNLFVIEDCAQSHGSVWNNQRAG-------TIGD--IGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRAD 219 (418) T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETTEETT-------SSSS--EEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBT T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCEECC-------CCCE--EEECCCCCCEEEEECCCCCCCCCCCCCCCCHHCEEEC T ss_conf 999998639668636431357515881424-------4642--4202455645786667732442232310010000423 Q ss_pred C------------------------CC--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC-C Q ss_conf 3------------------------67--6124579999999856525899999999999999999997279945535-8 Q T0591 281 V------------------------SL--RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART-P 333 (406) Q Consensus 281 ~------------------------~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p 333 (406) . .. ..+. .|.++ .+.+ -+.+.+..++.+++.+.+.+.|++++++.+.. | T Consensus 220 g~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm~~-i~Aai--g~~q-L~~l~~~~~~R~~~a~~y~~~L~~~~~i~~~~~~ 295 (418) T 2c81_A 220 SRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSE-FQSAI--LLDQ-LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRP 295 (418) T ss_dssp TEEECSCGGGCCTTCBSEEECCSSCCCBCCCCH-HHHHH--HHHH-HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHH--HHHH-HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 544566543223234443212100022223321-20234--5545-5432121011101455554332134312344433 Q ss_pred -C---CCEEEE-EECCC---CCCCHHHHHHHHHHHC---CEEEEECC-------CC---CCC-----------------C Q ss_conf -8---730787-76688---7889899999999868---91896161-------02---679-----------------9 Q T0591 334 -Q---AGSYLF-PRLPK---LAVAPAEFVKILRLQA---GVVVTPGT-------EF---SPH-----------------T 375 (406) Q Consensus 334 -~---gg~~~w-~~~~~---~~~~~~~~~~~Ll~~~---gV~v~pG~-------~F---g~~-----------------~ 375 (406) . .++|.+ +.++. .+.+..++.+.|.++. ++...|+. .| +.. - T Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~Rd~l~~~L~~~~~~~~~~~~~~~~Plh~qP~y~~~~~~~~~~~~~~~~~~~~~~~~ 375 (418) T 2c81_A 296 PQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHY 375 (418) T ss_dssp TTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCC T ss_pred CCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCCCCCCC T ss_conf 33344430378999843541667999999999837799817978774502128333213543332210223202556888 Q ss_pred -------CCEEEEEEC---CCHHHHHHHHHHHHHHHHHH Q ss_conf -------985899850---99799999999999999985 Q T0591 376 -------ADSVRLNFS---QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 376 -------~~~iRis~~---~~~e~l~~al~rl~~~~~~~ 404 (406) ...+.|..- +++++++.-++.|.+++++| T Consensus 376 P~ae~l~~~~i~LP~~~~lt~~~~i~~ii~~i~kv~kk~ 414 (418) T 2c81_A 376 PVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418) T ss_dssp HHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 679999709699538988897999999999999999986 No 92 >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Probab=99.85 E-value=6.3e-19 Score=145.90 Aligned_cols=336 Identities=13% Similarity=0.095 Sum_probs=196.7 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCCHH--HHHHHH-HHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 3341567867887888999999999980878888788---88988--999999-99998648867886707882487278 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RGDLG--IRDLLA-PRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G~~~--Lr~aia-~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) -|+|-..+ ...+|.+.+++...+...-..+|+-. .|... ..|.+| +...+.+|.+ ..+|.+++| +++ T Consensus 32 ~l~l~ase---n~~s~~~~~~~~~~~~~~y~~g~~~~r~~~G~~~~~~~E~la~e~~~~lfga~---~a~v~~~SG-t~A 104 (420) T 3gbx_A 32 HIELIASE---NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD---YANVQPHSG-SQA 104 (420) T ss_dssp SEECCTTC---CCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCS---EEECCCSSH-HHH T ss_pred CEEEECCC---CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CEEEEECCH-HHH T ss_conf 85786068---87999999998577625366889976355764879999999999999983999---648981888-999 Q ss_pred HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHH-----CCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC Q ss_conf 99999999720010101310551389999982-----9969998604466677666778899999850254034215666 Q T0591 114 LFLAVAATVARGDKVAIVQPDYFANRKLVEFF-----EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPN 188 (406) Q Consensus 114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~-----g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~ 188 (406) ...++.++++|||+|++....+..+....... ..+.++.+. ...+.+|++++++.+.+.++.++++.+| T Consensus 105 n~~~~~al~~pgd~il~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iD~~~l~~~~~~~~~~vii~~~s 178 (420) T 3gbx_A 105 NFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI------DESGKIDYDEMAKLAKEHKPKMIIGGFS 178 (420) T ss_dssp HHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEE------CTTCSCCHHHHHHHHHHHCCSEEEECCT T ss_pred HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCC------CCCCCCCHHHHHHHCCCCCCEEEEECCC T ss_conf 9999999708998254466247999999999975487457865797------7223538999998544369879996478 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH Q ss_conf 4323344378999999998637875784175023-556888765223321026786899850400104631121143325 Q T0591 189 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSR-LRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 189 NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~-l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~ 267 (406) |..+.. ++++|.++|+++|+++++|+++.. +.+.+....+. . .. -++.+|++|.++.|| -|.++.. T Consensus 179 ~~~~~~----dl~~i~~ia~~~g~~l~~D~Ah~~G~~~~~~~~~~~---~--~a--Di~s~s~hK~l~~~~--Gg~i~~~ 245 (420) T 3gbx_A 179 AYSGVV----DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV---P--HA--HVVTTTTHKTLAGPR--GGLILAK 245 (420) T ss_dssp TCCSCC----CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST---T--TS--SEEEEESSGGGCSCS--CEEEEES T ss_pred CCCCCC----CHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCCCC---C--EE--EEEEEECCCCCCCCC--CEEEEEE T ss_conf 788752----899999778776978980123331451468778863---3--34--699932642357997--5699982 Q ss_pred ---HHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCEEEEE Q ss_conf ---8999999987520367612457-999999985-6525899999999999999999997279945535-887307877 Q T0591 268 ---RAIIARMEKLQAIVSLRAAGYS-QAVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFART-PQAGSYLFP 341 (406) Q Consensus 268 ---~~~i~~l~~~~~~~~~~~~~~~-q~a~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~gg~~~w~ 341 (406) ................+.+... ..+...++. .......+..++...+.+.+.+.+... ++.+.. +.....+|+ T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~v~~~~~~~~~v~~ 324 (420) T 3gbx_A 246 GGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLL 324 (420) T ss_dssp SCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEE T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEEE T ss_conf 508899887404516733378569999999999999847448999999999999999888754-9764689987748999 Q ss_pred ECCCCCCCHHHHHHHHHHHCCEEEEEC----CCCCCCCCCEEEEEEC------CCHHHHHHHHHHHHHHHHH Q ss_conf 668878898999999998689189616----1026799985899850------9979999999999999998 Q T0591 342 RLPKLAVAPAEFVKILRLQAGVVVTPG----TEFSPHTADSVRLNFS------QDHEAAVAAARRIVTLVER 403 (406) Q Consensus 342 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG----~~Fg~~~~~~iRis~~------~~~e~l~~al~rl~~~~~~ 403 (406) ++...+.+..++.. +|+++||.+..+ ..-.+..+..+|+++. ..++++++..+.|.++++. T Consensus 325 ~~~~~~~~~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~lRig~~~~tt~G~~e~d~~~ia~~i~~~l~~ 395 (420) T 3gbx_A 325 DLVDKNLTGKEADA-ALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420) T ss_dssp ECGGGTCCHHHHHH-HHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT T ss_pred EECCCCCCHHHHHH-HHHHCCCEECCCCCCCCCCCCCCCCCEEECCCHHHCCCCCHHHHHHHHHHHHHHHHC T ss_conf 83788989999999-999778988757777986776677742404606540799989999999999999961 No 93 >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate- loop, pyridoxal phosphate, selenocysteine synthase (SECS; HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Probab=99.84 E-value=3.7e-19 Score=147.49 Aligned_cols=312 Identities=12% Similarity=0.043 Sum_probs=188.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH-HHHHHHH---HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEEC Q ss_conf 889999999999864886788670788248727899-9999997---200101013105513899999829969998604 Q T0591 80 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF-LAVAATV---ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLD 155 (406) Q Consensus 80 ~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~-~~~~~l~---~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~ 155 (406) ..+...+..|+.+..|.+.. . ..++++|++++-. +++.++. ..++.|+++...+.+....+..+|++++.|+.. T Consensus 97 ~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~tg~~~~~~l~a~~~~~~~~~~vi~~~~~h~s~~k~~~~~g~~~~~v~~~ 174 (450) T 3bc8_A 97 NKITNSLVLNVIKLAGVHSV-A-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 174 (450) T ss_dssp HHHHHHHHHHHHHHHTCTTC-C-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE T ss_pred HHHHHHHHHHHHHHCCCCCC-C-CEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEEE T ss_conf 99999999999985299745-6-654607337999999999999837999989987411699999999849968999755 Q ss_pred CCCCCCCCCCCCHHHHHHHHCC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC Q ss_conf 4666776667788999998502----540342156664323344378999999998637875784175023556888765 Q T0591 156 YVSADETRAGLDLTGLEEAFKA----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYT 231 (406) Q Consensus 156 ~~~~~~~~~~~d~~~l~~~~~~----~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~ 231 (406) . ++..+.+|+++|++++++ .+.+++.++|+|++|..- ++++|.++|++||+++++|+||+.... ... T Consensus 175 ~---~~~~~~~d~~~l~~~i~~~~~~~~~~v~~~~~~~~~g~~~---~l~~i~~i~~~~~~~l~vD~A~g~~~~---~~~ 245 (450) T 3bc8_A 175 L---EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSS---KCM 245 (450) T ss_dssp E---ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCH---HHH T ss_pred E---CCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEH---HHHHHHHHHHHHCCEEEEECCCHHHHH---HHH T ss_conf 0---4744565999999999874556707999807988886142---699999999985987999657677755---403 Q ss_pred CHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 22332102678689985040010463112114332589999999875203676124579999999856525899999999 Q T0591 232 HLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARH 311 (406) Q Consensus 232 ~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 311 (406) ...........--++..|.+|.++.|+...+.+..++++++.+...........+...+.+....+. ..-........ T Consensus 246 ~~~~~~~~~~~~d~~~~s~hK~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lg--~~~~~~~~~~~ 323 (450) T 3bc8_A 246 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG--CSGYRKLLKER 323 (450) T ss_dssp HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH--HHHHHHHHHHH T ss_pred HCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHH T ss_conf 1264556647612899528765667988515886698999999987167666762489999999998--86317899999 Q ss_pred HHHHHHHHHHHHHC---CCCEEE-CCCC--CEEEEEE-CC-CCCCCHHHHHHHHHHHCCEEE----EEC----------C Q ss_conf 99999999999727---994553-5887--3078776-68-878898999999998689189----616----------1 Q T0591 312 QAIRDELLHVLRGC---EGVFAR-TPQA--GSYLFPR-LP-KLAVAPAEFVKILRLQAGVVV----TPG----------T 369 (406) Q Consensus 312 ~~~r~~l~~~L~~~---~g~~~~-~p~g--g~~~w~~-~~-~~~~~~~~~~~~Ll~~~gV~v----~pG----------~ 369 (406) .++.+.+.+.|..+ .+.... .|.. .+.+++. +. ..+.+..++...| .+.||.. .++ . T Consensus 324 ~~~a~~l~~~L~~l~~~~~~~~l~~~~~~~s~~~~l~~~~~~~~~~~~~l~~~L-~~~gI~g~~v~~~~~~~~~~~~~~~ 402 (450) T 3bc8_A 324 KEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSML-FTRQVSGARAVPLGNVQTVSGHTFR 402 (450) T ss_dssp HHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHH-HHTTCCSCEEECSCCEEEETTEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH-HHCCCCEEEEECCHHHCEECCEEEC T ss_conf 999999999999888751825357877764268998740677877999999999-9539750233211201612435420 Q ss_pred CCCCCC----CCEEEEEEC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 026799----985899850--997999999999999999856 Q T0591 370 EFSPHT----ADSVRLNFS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 370 ~Fg~~~----~~~iRis~~--~~~e~l~~al~rl~~~~~~~r 405 (406) .|+... ..++|++++ .++|+++..+++|+++++++| T Consensus 403 ~~~~~~~~~~~~~i~i~~s~~~T~edID~~v~~L~kvl~~~r 444 (450) T 3bc8_A 403 GFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450) T ss_dssp TTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 345556667787699983489999999999999999999986 No 94 >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Probab=99.84 E-value=4.8e-17 Score=133.16 Aligned_cols=290 Identities=15% Similarity=0.123 Sum_probs=176.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH----HHHC Q ss_conf 888788889889999999999864886788670788248727899999999720010101310551389999----9829 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLV----EFFE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~----~~~g 146 (406) +-|+- .|.|. ++++.+.+....|. + ..++++.++.|+..++.+++.|||+|++....|......+ ...| T Consensus 54 ~~Y~R-~~nPt-~~~LE~~lA~leg~----e-~al~~sSGmaAi~~al~all~~GD~vv~~~~~~~~t~~~~~~~~~~~g 126 (404) T 1e5e_A 54 YIYTR-LGNPT-VSNLEGKIAFLEKT----E-ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG 126 (404) T ss_dssp CCBTT-TCCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT T ss_pred CEECC-CCCHH-HHHHHHHHHHHHCC----C-EEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCC T ss_conf 61338-98868-99999999998699----8-299977999999999999857999899827975068999998763468 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCC Q ss_conf 9699986044666776667788999998502540342156664323344378999999998637-875784175023556 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY-GATVIADQLYSRLRY 225 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~-~~~ii~De~Y~~l~~ 225 (406) .++..++ .-|++++++++++++|+|++.+|+||+|.+.+ +++|+++|+++ ++++++|+.+..-. T Consensus 127 v~v~~~d-----------~~d~e~i~~ai~~~tklV~~E~psnp~~~v~D---i~~ia~iA~~~~g~~vvvD~t~a~~~- 191 (404) T 1e5e_A 127 IQVDFIN-----------TAIPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPM- 191 (404) T ss_dssp CEEEEEC-----------TTSTTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTT- T ss_pred EEEEECC-----------CCCHHHHHHHCCCCCCEEEEECCCCCCCCCCC---HHHHHHHHHHCCCCEEEEECCCCCCE- T ss_conf 6999759-----------99999999746778868999689898875148---99999996342695899978978752- Q ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCH Q ss_conf 888765223321026786899850400104631-1211433258999999987520--3676124579999999856525 Q T0591 226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAI--VSLRAAGYSQAVLRGWFDEAPG 302 (406) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~ 302 (406) ...++ ..+ .| |+++|+||.++-.| .-.|+++++++++..++..... .....+.. .+..++.. -+ T Consensus 192 ---~~~p~-~~G-aD----ivv~S~tK~l~Gh~d~~gG~v~~~~~~i~~~r~~~~~~~~G~~l~p~---~A~ll~rg-l~ 258 (404) T 1e5e_A 192 ---ITNPV-DFG-VD----VVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH---DAWLITRG-LS 258 (404) T ss_dssp ---TCCGG-GGT-CS----EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHH---HHHHHHHH-HT T ss_pred ---ECCCC-CCC-EE----EEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHCC-CC T ss_conf ---12543-013-37----99825733367888843589724231599999999863668858989---99999805-89 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-EEECCC-----------------CCEEEEEECCCCCCCHHHHHHHHHHHCCEE Q ss_conf 89999999999999999999727994-553588-----------------730787766887889899999999868918 Q T0591 303 WMEDRIARHQAIRDELLHVLRGCEGV-FARTPQ-----------------AGSYLFPRLPKLAVAPAEFVKILRLQAGVV 364 (406) Q Consensus 303 ~~~~~~~~~~~~r~~l~~~L~~~~g~-~~~~p~-----------------gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~ 364 (406) -+..+.++..++...+.+.|.+.+.+ ++..|. ||++.+ .+. ++.+.+.++++.-.+. T Consensus 259 tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yp~l~s~p~~~~~~~~~~g~g~~~sf-~~~----~~~~~a~~f~~~l~l~ 333 (404) T 1e5e_A 259 TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILK----SGFEGAKKLLDNLKLI 333 (404) T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EET----THHHHHHHHHHTCSSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEE-EEC----CCHHHHHHHHHCCCCC T ss_conf 78999999999999999999849993167468888883199999756689861388-876----8699999999728855 Q ss_pred EEECCCCCC-------------------------CCCCEEEEEECC-CHH----HHHHHHHHHHHHH Q ss_conf 961610267-------------------------999858998509-979----9999999999999 Q T0591 365 VTPGTEFSP-------------------------HTADSVRLNFSQ-DHE----AAVAAARRIVTLV 401 (406) Q Consensus 365 v~pG~~Fg~-------------------------~~~~~iRis~~~-~~e----~l~~al~rl~~~~ 401 (406) - .|..+|. -.++.||||++. +.| ++++|+++|.+.. T Consensus 334 ~-~~~slG~~~sLi~~~a~~~h~~~~~~~~~~~Gi~~~liRlSvGlE~~~dLi~Dl~~AL~a~~~~~ 399 (404) T 1e5e_A 334 T-LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLRSH 399 (404) T ss_dssp E-ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHCC- T ss_pred E-EEECCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC T ss_conf 4-85567777504448620055338999999769893949999256999999999999999998640 No 95 >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal phosphate dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Probab=99.84 E-value=6e-17 Score=132.52 Aligned_cols=336 Identities=13% Similarity=0.075 Sum_probs=198.7 Q ss_pred CEEECCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 334156786-78878889999999999808788887--888898899999999998648867886707882487278999 Q T0591 40 PVDFSHGDV-DAHEPTPGAFDLFSAGVQSGGVQAYT--EYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 40 ~i~ls~G~p-d~~~p~~~~~~~~~~~~~~~~~~~Y~--~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) .++|+.-+- .+. -.|.+.+++.++++.-+....+ -..|...+-+.+-+.+.+.+|. ++-+++++| -.+-.. T Consensus 48 ~~~FsSndYLGL~-~~p~v~~a~~~a~~~~G~g~~~Sr~~~G~~~~h~~LE~~lA~~~g~----e~al~~~sG-~~an~~ 121 (401) T 2bwn_A 48 ITVWCGNDYLGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK----EAALVFSSA-YNANDA 121 (401) T ss_dssp EEECSCSCTTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC----SEEEEESCH-HHHHHH T ss_pred EEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCCCCC-HHHHHH T ss_conf 9998852001768-9999999999999985898746523328857899999999997699----850101221-477888 Q ss_pred HHHHH--HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---CCCCEEEECC-CCCCC Q ss_conf 99999--720010101310551389999982996999860446667766677889999985---0254034215-66643 Q T0591 117 AVAAT--VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF---KAGARVFLFS-NPNNP 190 (406) Q Consensus 117 ~~~~l--~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~---~~~~k~i~l~-~P~NP 190 (406) ++.++ ..+||.|+...-.+.+....+++.+++.+...- -|++.+++.+ .+..+.++++ .--.- T Consensus 122 ~i~~l~~~~~~d~i~~D~~~HaSi~~g~~ls~a~~~~f~H-----------nd~~~l~~~~~~~~~~~~~~iv~egvySm 190 (401) T 2bwn_A 122 TLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-----------NDVAHLRELIAADDPAAPKLIAFESVYSM 190 (401) T ss_dssp HHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT-----------TCHHHHHHHHHHSCTTSCEEEEEESBCTT T ss_pred HHHHHHHCCCCCCEECHHHHHHHCCHHHHHCCCCEEEEEC-----------CCHHHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 9998872568984443524144112044305685367406-----------72676677666404656506999753057 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 23344378999999998637875784175023556888765223321026786899850400104631121143325899 Q T0591 191 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) +|.+.+ +.+|++++++|+.++++||+|+.-++...-........ ...+..|++.||||.||..| ||+++++++ T Consensus 191 dGdiap---L~~l~~l~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~g-~~~~vdi~~~tlsKA~Gs~G---G~v~g~~~~ 263 (401) T 2bwn_A 191 DGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDG-LMHRIDIFNGTLAKAYGVFG---GYIAASARM 263 (401) T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHT-CGGGCSEEEEESSSTTCSCC---EEEEECHHH T ss_pred CCCCCC---HHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCHHHCC-CCCCCCEECCCCCCCCCCCC---CCCCHHHHH T ss_conf 643364---38776654125328998432024410378874045409-85101200024555553356---412003789 Q ss_pred HHHHHHHHH-HCCCCHHHHHHHH-HHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCC Q ss_conf 999998752-0367612457999-9999856-525899999999999999999997279945535887307877668878 Q T0591 271 IARMEKLQA-IVSLRAAGYSQAV-LRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA 347 (406) Q Consensus 271 i~~l~~~~~-~~~~~~~~~~q~a-~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~ 347 (406) ++.++.... ++.+.+.++.+.+ +...++- ......+.+..++.+.+.+...+... |+.+...+ +--+-+-+.+ . T Consensus 264 i~~l~~~~~~~ifS~~lpp~~~aa~~~~l~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~-spI~pi~~g~-~ 340 (401) T 2bwn_A 264 VDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHG-SHIVPVVIGD-P 340 (401) T ss_dssp HHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCS-SSCEEEECCC-H T ss_pred HHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC-CCEEEEEECC-H T ss_conf 9998740313441456878999999998766303117788887678999999999967-99868999-9979999699-9 Q ss_pred CCHHHHHHHHHHHCCEEEEECCCC--CCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH Q ss_conf 898999999998689189616102--6799985899850--9979999999999999998 Q T0591 348 VAPAEFVKILRLQAGVVVTPGTEF--SPHTADSVRLNFS--QDHEAAVAAARRIVTLVER 403 (406) Q Consensus 348 ~~~~~~~~~Ll~~~gV~v~pG~~F--g~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~ 403 (406) ....+++++|++++||.+.|-. | =+.+...+|+++. .++++++..++.|+++..| T Consensus 341 ~~~~~~~~~lL~e~Gi~v~~i~-yPtVp~g~~rlRi~lsa~ht~~dId~l~~~L~~~~~~ 399 (401) T 2bwn_A 341 VHTKAVSDMLLSDYGVYVQPIN-FPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401) T ss_dssp HHHHHHHHHHHHHHCEECCEEC-TTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHCCEEEEEEC-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999996898999976-8978999727999747668999999999999999985 No 96 >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Probab=99.83 E-value=7.9e-20 Score=152.03 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=155.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEE---EECCCCHHHHHHHHHHHHCCHHHHHHH-CCCHHHHHHHHH----------HCC Q ss_conf 999999999986488678867078---824872789999999972001010131-055138999998----------299 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLI---ITPGTQGALFLAVAATVARGDKVAIVQ-PDYFANRKLVEF----------FEG 147 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~---it~G~~~~l~~~~~~l~~pGd~Vl~~~-P~y~~~~~~~~~----------~g~ 147 (406) -|+++-+.+.+.+|.+ +-++ +++| ++++..++.+++.|||+|++.+ +.|..+...+.. .|. T Consensus 66 gre~LE~~~A~l~GaE----aAlvrp~f~SG-t~Ai~~al~alL~pGDeVI~~~g~~y~tl~~vig~~~~~~~~L~~~Gi 140 (431) T 3ht4_A 66 GRDTLEKVYADVFGAE----AGLVRPQIISG-THAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI 140 (431) T ss_dssp HHHHHHHHHHHHTTCS----EECCBTTSCSH-HHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC T ss_pred HHHHHHHHHHHHHCCC----CEEEECCCCCH-HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCHHHHHHHHCCC T ss_conf 4999999999972986----16763465776-999999999717899989993498763021002410112566886394 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCC Q ss_conf 699986044666776667788999998502540342156664-323344378999999998637--87578417502355 Q T0591 148 EMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNN-PAGVVYSAEEIGQIAALAARY--GATVIADQLYSRLR 224 (406) Q Consensus 148 ~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N-PTG~~~s~~~l~~i~~~a~~~--~~~ii~De~Y~~l~ 224 (406) +...+++. .+...|++.++++++++||++++.+|+| +++.+++.+++++|+++|+++ ++++++|++|..+. T Consensus 141 ~~~~v~~~------~~~~~Dle~l~~aI~~~TklV~Ie~s~ny~~~p~~~i~dI~~I~~lak~~~~~viv~vDn~~g~~~ 214 (431) T 3ht4_A 141 GYNAVPLT------EGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431) T ss_dssp EEEECCBC------TTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS T ss_pred EEEECCCC------CCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 45511456------677448999997338878679998257767899777877999999999758998899546655532 Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 68887652233210267868998504001046311211-43325899999998752036761245799999998565258 Q T0591 225 YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG-VAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGW 303 (406) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG-~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 303 (406) ....+ +. .. . -++++|+||.++..|.++| |+++++++++++.........+...-........+-.+-.. T Consensus 215 ~~~~P---l~--~G--a--Div~~SlsK~lgG~gap~GG~I~G~keLIe~~~~~ltapg~g~~~g~~~~~~~~~~~gl~~ 285 (431) T 3ht4_A 215 EEQEP---CH--VG--A--DLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL 285 (431) T ss_dssp SSCCG---GG--TT--C--SEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH T ss_pred CCCCC---HH--HC--C--CEEEEEEHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHH T ss_conf 24560---76--47--7--7799970341677766655999828999999999842887554431377899998615788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 99999999999999999997279945535 Q T0591 304 MEDRIARHQAIRDELLHVLRGCEGVFART 332 (406) Q Consensus 304 ~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 332 (406) ..++..+..+.+..+.+.|.++ |+.+.+ T Consensus 286 ap~~~~~a~k~a~~~a~~le~l-G~~v~P 313 (431) T 3ht4_A 286 APHVAGQALKGAIFTAAFLEKL-GMNTSP 313 (431) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCEES T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEECC T ss_conf 9999999999899999999976-983079 No 97 >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, joint center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 1h0c_A* 1j04_A* Probab=99.83 E-value=4.2e-17 Score=133.56 Aligned_cols=321 Identities=12% Similarity=0.088 Sum_probs=203.0 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHC Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999720010101310 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQP 133 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P 133 (406) +|.+++++ .....+++++. ..++-+.+.+.+.+..|.+- ...|++|.|+|.++..++..++.+||+|++..- T Consensus 35 ~~~Vl~am----~~~~i~hrs~e--f~~i~~~~r~~l~~l~~~~~--~~~iif~gsgT~a~~a~~~~~~~~~~~vl~~~~ 106 (393) T 3kgw_A 35 APRVLAAG----SLRMIGHMQKE--MLQIMEEIKQGIQYVFQTRN--PLTLVVSGSGHCAMETALFNLLEPGDSFLTGTN 106 (393) T ss_dssp CHHHHHHT----TCCCCCTTSHH--HHHHHHHHHHHHHHHHTCCC--SEEEEESCCTTTHHHHHHHHHCCTTCEEEEEES T ss_pred CHHHHHHH----CCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCC--CCEEEECCCHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 99999974----76888878889--99999999999999968999--858997796899999999970277882443215 Q ss_pred CCHHHH--HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 551389--9999829969998604466677666778899999850-2540342156664323344378999999998637 Q T0591 134 DYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY 210 (406) Q Consensus 134 ~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~ 210 (406) .++... ......+...+.+..+. +...|.++.+..+. .++++++++.-+|.||...+ +++|.++|+++ T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~p---i~~I~~~~~~~ 177 (393) T 3kgw_A 107 GIWGMRAAEIADRIGARVHQMIKKP------GEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRY 177 (393) T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT T ss_pred CHHHHHHHHHHHHHCCCEEEECCCC------CCCCCHHHHHHHHHCCCCCEEEEECEEEEEEECCC---HHHHHHHHHHC T ss_conf 5146689999998099502204788------88779899999874599738998331331231377---99999999874 Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC-CCCCHHHHHHHHHHHHHHHHHH---------- Q ss_conf 87578417502355688876522332102678689985040010463-1121143325899999998752---------- Q T0591 211 GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS-GYRLGVAFGSRAIIARMEKLQA---------- 279 (406) Q Consensus 211 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-GlRiG~~~~~~~~i~~l~~~~~---------- 279 (406) ++.+++|.+.+.- .....+. ..+--+++.|-.|.++.| | +|+++..+...+....... T Consensus 178 g~~~~vD~~~s~g----~~~~~~~-----~~~~d~~~~s~~K~l~~p~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393) T 3kgw_A 178 QCLLLVDSVASLG----GVPIYMD-----QQGIDIMYSSSQKVLNAPPG--ISLISFNDKAKYKVYSRKTKPVSFYTDIT 246 (393) T ss_dssp TCEEEEECTTTTT----TSCCCTT-----TTTCCEEEEESSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCSTTCHH T ss_pred CCEEEEEECCCCC----CEEECCC-----CCCCCEEEECCHHHCCCCCC--EEEEEECHHHHHHHHHCCCCCCCCCCCHH T ss_conf 9807997134655----0000012-----36875897434132279986--79999767887533201246743222011 Q ss_pred -----H-------CCCCH-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCC--CCEEEEEE Q ss_conf -----0-------36761-245799999998565-2589999999999999999999727994553-588--73078776 Q T0591 280 -----I-------VSLRA-AGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFAR-TPQ--AGSYLFPR 342 (406) Q Consensus 280 -----~-------~~~~~-~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~--gg~~~w~~ 342 (406) . ...++ +.....++...+... ..-+....++.+++.+.+.+.+......... .|. ....+-+. T Consensus 247 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~g~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~rs~~i~~~~ 326 (393) T 3kgw_A 247 YLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVT 326 (393) T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEE T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCEEEEE T ss_conf 13444300024676478773668989999999999703068999999999999999985587000588676588089998 Q ss_pred CCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE-EC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 6887889899999999868918961610267999858998-50--997999999999999999856 Q T0591 343 LPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN-FS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 343 ~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-~~--~~~e~l~~al~rl~~~~~~~r 405 (406) +|+ +.++.++...|++++||.+..|... ...+.+|+| ++ ++.|+++..++.|++++++++ T Consensus 327 ~p~-~~~~~~~~~~l~~~~~I~v~~G~~~--~~~~~~Ris~~g~~~t~edi~~lv~alk~~l~~l~ 389 (393) T 3kgw_A 327 VPA-GYNWRDIVSYVLDHFSIEISGGLGP--TEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393) T ss_dssp CCT-TBCHHHHHHHHHHHHCEECBCCCGG--GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC T ss_pred CCC-CCCHHHHHHHHHHCCCEEEECCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 899-9899999999974399899567723--45998999577565999999999999999999876 No 98 >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Probab=99.82 E-value=1.9e-16 Score=129.19 Aligned_cols=283 Identities=18% Similarity=0.208 Sum_probs=179.8 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH---- Q ss_conf 7888878888988999999999986488678867078824872789999999972001010131055138999998---- Q T0591 69 GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF---- 144 (406) Q Consensus 69 ~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~---- 144 (406) ..+.|+- .|.|. ++++.+.+....|. + ..++++.+..|+..++.+++.+||+|++....|......+.. T Consensus 42 ~~~~Y~R-~~nPt-~~~le~~la~LEg~----~-~a~~fsSGMAAi~~~l~~ll~~gd~vv~~~~~yg~t~~~~~~~~~~ 114 (386) T 1cs1_A 42 RAHDYSR-RGNPT-RDVVQRALAELEGG----A-GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386) T ss_dssp CSCSBTT-TCCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT T ss_pred CCCCCCC-CCCHH-HHHHHHHHHHHHCC----C-CEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCC T ss_conf 6874308-98878-99999999998399----8-3788357799999999972379988996167547548887520346 Q ss_pred HCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 29969998604466677666778899999850254034215666432334437899999999863787578417502355 Q T0591 145 FEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 145 ~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) .|.+...+. ..|.+.+++.++++||+||+-+|.|||..+.. +++|+++|+++|+++++|+.+.--. T Consensus 115 ~gi~~~~~d-----------~~d~~~~~~~~~~~t~~i~~EtpsNP~l~v~D---i~~i~~ia~~~g~~~vVDnT~atP~ 180 (386) T 1cs1_A 115 GCYRVLFVD-----------QGDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPA 180 (386) T ss_dssp TSCEEEEEC-----------TTCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTT T ss_pred CEEEEEEEC-----------CCCHHHHHHHCCCCCEEEEECCCCCCCCCCCC---HHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 549999702-----------89889999860888608997168997543355---8999888987498699978855813 Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH Q ss_conf 6888765223321026786899850400104631-12114332-589999999875203676124579999999856525 Q T0591 225 YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG 302 (406) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~ 302 (406) + ..++ ..+ .| |+++|.||.++-.| .=.|.+++ ++++.+.+...+.......+......+..-++ T Consensus 181 ~----~~Pl-~~G-aD----ivvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~~~p~da~ll~rgl~---- 246 (386) T 1cs1_A 181 L----QNPL-ALG-AD----LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---- 246 (386) T ss_dssp T----CCGG-GGT-CS----EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT---- T ss_pred C----CCCC-CCC-CC----EEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC---- T ss_conf 3----4441-148-98----99972551106887655675456846766566665412465454232899974213---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCE-EECC-----------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCEE Q ss_conf 899999999999999999997279945-5358-----------------8730787766887889899999999868918 Q T0591 303 WMEDRIARHQAIRDELLHVLRGCEGVF-ARTP-----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVV 364 (406) Q Consensus 303 ~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p-----------------~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~ 364 (406) -+..+.++..++...+.+.|.+.+.+. +..| -||++.+. +. .+.+-+.++++.-.+. T Consensus 247 TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~l~~~~~~g~gg~~sf~-~~----~~~~~a~~f~~~l~l~ 321 (386) T 1cs1_A 247 TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE-LD----GDEQTLRRFLGGLSLF 321 (386) T ss_dssp THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ES----SCHHHHHHHHHTCSSS T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEEEE-EC----CCHHHHHHHHHHCCCC T ss_conf 203189999999999999985089876885789888803777863158985277642-05----9899999999708826 Q ss_pred EEECCCCCC-------------------------CCCCEEEEEECC-CHHHHHH Q ss_conf 961610267-------------------------999858998509-9799999 Q T0591 365 VTPGTEFSP-------------------------HTADSVRLNFSQ-DHEAAVA 392 (406) Q Consensus 365 v~pG~~Fg~-------------------------~~~~~iRis~~~-~~e~l~~ 392 (406) . .|..+|. -.++.||+|++. +.|+|.+ T Consensus 322 ~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlSvGlEd~eDLi~ 374 (386) T 1cs1_A 322 T-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIA 374 (386) T ss_dssp E-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHH T ss_pred E-ECCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHH T ss_conf 4-5636687651430673124522799999866989296999970199999999 No 99 >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* Probab=99.82 E-value=4.6e-16 Score=126.50 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=184.5 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHH----HHC Q ss_conf 8887888898899999999998648867886707882487278999999997200101013105513899999----829 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE----FFE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~----~~g 146 (406) +.|+-. |.|. ++++.+.+....|. + ..++++.+..|+..++.+++.+||+|+++...|..-...+. ..| T Consensus 56 ~~YsR~-gnPT-~~~LE~~la~LEg~----~-~a~~~sSGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~~~~~~l~~~G 128 (398) T 2rfv_A 56 YIYTRL-GNPT-TDALEKKLAVLERG----E-AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG 128 (398) T ss_dssp CSBTTT-CCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTT T ss_pred CEEECC-CCHH-HHHHHHHHHHHHCC----C-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 665289-8878-99999999998698----4-066666789999999962568999899853124304577776521387 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC Q ss_conf 96999860446667766677889999985025403421566643233443789999999986378757841750235568 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYA 226 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~ 226 (406) .++..+. .-|+++++++++++||+||+-+|.|||..+.. +++|+++|+++|+.+++|..+..-. T Consensus 129 i~~~~~d-----------~~d~~~~~~~i~~~Tklv~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vvDNT~atP~-- 192 (398) T 2rfv_A 129 INVRFVD-----------AAKPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPY-- 192 (398) T ss_dssp CEEEEEC-----------TTSHHHHHHHCCTTEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTT-- T ss_pred EEEEECC-----------CCCHHHHHHHCCCCCCEEEECCCCCCCCCCCC---CHHHHHHHHHCCCEEECCCCCCCCE-- T ss_conf 4787328-----------99999999747777608994289998565256---5999998732297697148631731-- Q ss_pred CCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 88765223321026786899850400104631-12114332589999999--8752036761245799999998565258 Q T0591 227 GASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARME--KLQAIVSLRAAGYSQAVLRGWFDEAPGW 303 (406) Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~--~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 303 (406) -..++ ..+ .| |+++|.||.++-.| .=.|.+++..+.+...+ .++.......++.....+..-| +- T Consensus 193 --~~~Pl-~~G-aD----ivihS~TKyi~GhsD~l~G~v~~~~~~~~~~r~~~~r~~~G~~~~p~~a~l~~rgL----~T 260 (398) T 2rfv_A 193 --CQQPL-QLG-AD----IVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGV----KT 260 (398) T ss_dssp --TCCGG-GGT-CS----EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHH----TT T ss_pred --ECCCH-HCC-CC----EEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC----CC T ss_conf --32313-228-98----89981443426887545432347899999999999998338988989999997681----75 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-EEECC-----------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE Q ss_conf 9999999999999999999727994-55358-----------------87307877668878898999999998689189 Q T0591 304 MEDRIARHQAIRDELLHVLRGCEGV-FARTP-----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVV 365 (406) Q Consensus 304 ~~~~~~~~~~~r~~l~~~L~~~~g~-~~~~p-----------------~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v 365 (406) +.-+.++..++...+.+.|.+.+.+ .+..| .||++.| .+. ++.+-+.++++.-.+.- T Consensus 261 L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf-~l~----~~~e~~~~f~~~L~l~~ 335 (398) T 2rfv_A 261 LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISF-EIA----GGLEAGRRMINSVELCL 335 (398) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EET----THHHHHHHHHTTCSSSE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEEEE-EEC----CCHHHHHHHHHCCCCCC T ss_conf 8999999999999999999749996767378867883255665217898859999-966----98999999997188250 Q ss_pred EECCCCCC-------------------------CCCCEEEEEECC-CHHHHHHHHHHHHHHHHH Q ss_conf 61610267-------------------------999858998509-979999999999999998 Q T0591 366 TPGTEFSP-------------------------HTADSVRLNFSQ-DHEAAVAAARRIVTLVER 403 (406) Q Consensus 366 ~pG~~Fg~-------------------------~~~~~iRis~~~-~~e~l~~al~rl~~~~~~ 403 (406) .+..+|. -.++.||||++. +.|+|.+ -|.+++++ T Consensus 336 -~a~SlGg~eSLi~~pa~~~h~~~~~e~r~~~Gi~~~liRlSvGlEd~~DLi~---Dl~~AL~~ 395 (398) T 2rfv_A 336 -LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIIN---DLEHAIRK 395 (398) T ss_dssp -ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHH---HHHHHHHH T ss_pred -EEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHH---HHHHHHHH T ss_conf -3136375230534753126656999999965979296999850099999999---99999997 No 100 >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} SCOP: c.67.1.9 Probab=99.82 E-value=8.5e-18 Score=138.27 Aligned_cols=302 Identities=15% Similarity=0.047 Sum_probs=175.7 Q ss_pred HHHHHH-HHHHHHCCCCCCCCCEEEEECCCCHH-HHHHHHHHH--HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCC Q ss_conf 999999-99998648867886707882487278-999999997--20010101310551389999982996999860446 Q T0591 82 IRDLLA-PRLAAFTGAPVDARDGLIITPGTQGA-LFLAVAATV--ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYV 157 (406) Q Consensus 82 Lr~aia-~~~~~~~g~~~~~~~~I~it~G~~~~-l~~~~~~l~--~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~ 157 (406) +.+.++ .|+ +..|.+. ..+++++++++ +.+++.++- .+++.|+++.-.+.+....+.++|++++.|+... T Consensus 134 ~~~~~~~~~~-~~~g~~~----~~~~~~~~tG~~~~l~l~a~~~~~~~~~Vi~~~~~H~S~~kai~~aG~~~v~v~~~~- 207 (456) T 2z67_A 134 LTNKILESFF-KQLGLNV----HAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL- 207 (456) T ss_dssp HHHHHHHHHH-HHTTCCC----EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE- T ss_pred HHHHHHHHHH-HHHCCCC----CEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECEE- T ss_conf 9999999999-9848996----078747674999999999963168999899726216779999998699799983622- Q ss_pred CCCCCCCCCCHHHHHHHHCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHH Q ss_conf 6677666778899999850254--03421566643233443789999999986378757841750235568887652233 Q T0591 158 SADETRAGLDLTGLEEAFKAGA--RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA 235 (406) Q Consensus 158 ~~~~~~~~~d~~~l~~~~~~~~--k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 235 (406) ++..+.+|+++|++++++.+ +.+++..|.||+......+++++|+++|++||+++++|++|+.+... ...... T Consensus 208 --~~~~~~~d~~~le~~i~~~~~~~~i~~v~~t~~~~~~g~~ddi~eIa~l~~~~gi~livD~A~g~~~~~---~~~~~~ 282 (456) T 2z67_A 208 --DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNY---YLEKLK 282 (456) T ss_dssp --ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH---HHHHHH T ss_pred --CCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCHHCCC---CCCCCC T ss_conf --362357699999999985735482699982689878886247999999999809979998987100103---444541 Q ss_pred HHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 21026786899850400104631121143325899999998752036761245799999998565258999999999999 Q T0591 236 EAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIR 315 (406) Q Consensus 236 ~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r 315 (406) . .....--+++.|+.|.+..|.-..++.+.++++++.+.+.........+.....+....+ +....++..++..+++ T Consensus 283 ~-~~~~gvD~vv~S~hK~l~~p~G~g~v~~~~~~~~~~v~~~~~~~~~~s~~~~~~a~l~~~--g~~~~~~~~~~~~~~~ 359 (456) T 2z67_A 283 K-AFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSM--GSKNYLELVKNQKNSK 359 (456) T ss_dssp H-HHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH T ss_pred C-HHHCCCCEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH T ss_conf 0-221687589971876666787813999778779999998722688872799999999999--8861056899999999 Q ss_pred HHHHHHHHHC---CCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE----EECCCCC-----CCCCCEEEEEE Q ss_conf 9999999727---9945535887307877668878898999999998689189----6161026-----79998589985 Q T0591 316 DELLHVLRGC---EGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVV----TPGTEFS-----PHTADSVRLNF 383 (406) Q Consensus 316 ~~l~~~L~~~---~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v----~pG~~Fg-----~~~~~~iRis~ 383 (406) +.+.+.|+++ .|..+.....-....+.+ ..+..++...| .+.||.. .+...++ .....++|+++ T Consensus 360 ~~l~~~L~~l~~~~g~~i~~~~~~i~~~i~~---~~d~~~l~~~L-~~~gVsG~~v~~~~~~~g~~~~~~~~~~yl~~~~ 435 (456) T 2z67_A 360 KLLDELLNDLSKKTGGKFLDVESPIASCISV---NSDPVEIAAKL-YNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNA 435 (456) T ss_dssp HHHHHHHHHHHHHSSCCBCCCCCSSEEEEEC---SSCHHHHHHHH-HHTTEESCEEECTTCHHHHTCSSCCSCCEEEEEC T ss_pred HHHHHHHHHHHCCCCCEECCCCCCCEEEEEC---CCCHHHHHHHH-HHCCCCHHHHHHHCCCCCCEEECCCCCCEEEEEC T ss_conf 9999999740344780536788875010112---66889999999-9759815788763210480685215778089982 Q ss_pred C--CCHHHHHHHHHHHHHHH Q ss_conf 0--99799999999999999 Q T0591 384 S--QDHEAAVAAARRIVTLV 401 (406) Q Consensus 384 ~--~~~e~l~~al~rl~~~~ 401 (406) + .++|+++.-+++|++++ T Consensus 436 sig~T~eDId~~v~~L~kiL 455 (456) T 2z67_A 436 AIGVRTEDIVNSVSKLEKIL 455 (456) T ss_dssp CTTCCHHHHHHHHHHHHTC- T ss_pred CCCCCHHHHHHHHHHHHHHH T ss_conf 48999999999999998975 No 101 >2pb2_A Acetylornithine/succinyldiaminopimelate aminotransferase; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis; HET: PLP; 1.91A {Salmonella typhimurium LT2} PDB: 2pb0_A* Probab=99.82 E-value=2.8e-16 Score=127.98 Aligned_cols=333 Identities=13% Similarity=0.113 Sum_probs=204.5 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.|||..| ...+-+-.|.+.+++.+++.... ..+... ..+.+..+|+++....+ .+.+..+++++++... T Consensus 58 ~ylD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~--~~~~~~-~~~~~~~lae~L~~~~~-----~~~~~f~~sGsea~e~ 129 (420) T 2pb2_A 58 EYIDFAGGIAVTALGHCHPALVEALKSQGETLW--HTSNVF-TNEPALRLGRKLIDATF-----AERVLFMNSGTEANET 129 (420) T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC--CCCTTS-CCHHHHHHHHHHHHHSS-----CSEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCC-CCHHHHHHHHHHHCCCC-----CCCEEECCCCCHHHHH T ss_conf 999953088877645896999999999986677--776631-38999999999861067-----0006542565278789 Q ss_pred HHHHH---H----HC-CHHHHHHHCCCHHHHHHHH-HHCC------------EEEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 99999---7----20-0101013105513899999-8299------------6999860446667766677889999985 Q T0591 117 AVAAT---V----AR-GDKVAIVQPDYFANRKLVE-FFEG------------EMVPVQLDYVSADETRAGLDLTGLEEAF 175 (406) Q Consensus 117 ~~~~l---~----~p-Gd~Vl~~~P~y~~~~~~~~-~~g~------------~~v~v~~~~~~~~~~~~~~d~~~l~~~~ 175 (406) ++... . .+ ...|+....+|++...... ..|- ....+| ..|.+.+++.+ T Consensus 130 a~~~a~~~~~~~~~~~r~~ii~~~g~yHG~t~~~~~~tg~~~~~~~~~~~~~~~~~~p-----------~~~~~~~~~~~ 198 (420) T 2pb2_A 130 AFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVP-----------FNDLHAVKAVM 198 (420) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEEC-----------TTCHHHHHHHC T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-----------CCCHHHHHHHC T ss_conf 9999998776427999867999968806885554246799544578889999869954-----------88328999844 Q ss_pred CCCCEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHH Q ss_conf 025403421566--643233443789999999986378757841750235568887652233210267868998504001 Q T0591 176 KAGARVFLFSNP--NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKT 253 (406) Q Consensus 176 ~~~~k~i~l~~P--~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 253 (406) ++++.++++ -| .|---...+++.+++|.++|++||+++|.||++..|.-.|..+..- .....|| +-++||. T Consensus 199 ~~~iAavii-EPi~g~~G~~~~~~~yl~~l~~lc~~~gillI~DEV~tGfGRtG~~~~~~--~~~v~PD----i~~~gK~ 271 (420) T 2pb2_A 199 DDHTCAVVV-EPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYM--HYGVTPD----ILTSAKA 271 (420) T ss_dssp CTTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHH--HHTCCCS----EEEECGG T ss_pred CCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCC--CCCCCCC----EEEEEEC T ss_conf 897689999-64568889816999999999999998499899615550778226765333--6772334----4788320 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 04631121143325899999998752036761245799999998565--2589999999999999999999727994553 Q T0591 254 ESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFAR 331 (406) Q Consensus 254 ~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~ 331 (406) ++ .|+-+|.+++.+++.+.+.......+++.++++..++.+.|+.. +...++..+.-+..++.+.+...+.+.+... T Consensus 272 l~-gG~p~~av~~~~~i~~~~~~~~~~~T~~g~pla~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~i~~V 350 (420) T 2pb2_A 272 LG-GGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI 350 (420) T ss_dssp GG-TTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE T ss_pred CC-CCCCCCCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 35-87655431223767624477776778899815666667778888755799999999999999999998648981677 Q ss_pred CCCCCEEEEEECCC-CCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 58873078776688-7889899999999868918961610267999858998--509979999999999999998569 Q T0591 332 TPQAGSYLFPRLPK-LAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 332 ~p~gg~~~w~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~~~~ra 406 (406) ...| ++.-+.+.. ......+++..++ ++|+++.|. +.+.+|++ +..+++++++++++|.+.+++.-| T Consensus 351 rg~G-lm~~i~~~~~~~~~~~~~~~~~~-e~Gll~~~~------g~~~ir~~PpL~it~~eId~~l~~l~~al~~vlA 420 (420) T 2pb2_A 351 RGMG-LLIGAELKPKYKGRARDFLYAGA-EAGVMVLNA------GADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 420 (420) T ss_dssp EEET-TEEEEEECGGGTTCHHHHHHHHH-HTTEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC T ss_pred EEEC-EEEEEEEECCCHHHHHHHHHHHH-HCCCEEECC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 6435-49999984783579999999999-789489427------9998999389778999999999999999999729 No 102 >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), structural genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Probab=99.81 E-value=5.2e-17 Score=132.92 Aligned_cols=325 Identities=11% Similarity=0.054 Sum_probs=193.0 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---C----- Q ss_conf 88899999999998087888878888988999999999986488678867078824872789999999972---0----- Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA---R----- 124 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---p----- 124 (406) ++|...+++...+.. ....+....|...+-+.+.+|+.+..|.+ +...++|+|+|++...++.+..+ . T Consensus 42 ~~~~a~~~~~~~~~~-n~~~~~~~p~~~~le~~v~~~la~l~g~~---~a~g~ftsGgT~an~~al~~ar~~~~~~~~~~ 117 (397) T 3f9t_A 42 VLPITRKIVDIFLET-NLGDPGLFKGTKLLEEKAVALLGSLLNNK---DAYGHIVSGGTEANLMALRCIKNIWREKRRKG 117 (397) T ss_dssp CCTHHHHHHHHHTTC-CTTSGGGBHHHHHHHHHHHHHHHHHTTCT---TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 279999999999986-69983117889999999999999982999---77079845762888999999887521222002 Q ss_pred -----CHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCE-EEECCCCCCCCCCCCCHH Q ss_conf -----01010131055138999998299699986044666776667788999998502540-342156664323344378 Q T0591 125 -----GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGAR-VFLFSNPNNPAGVVYSAE 198 (406) Q Consensus 125 -----Gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k-~i~l~~P~NPTG~~~s~~ 198 (406) ...|+++.-.+.+....++..|.+++.++++ .++.+|++.+++.+.+.++ +++.+.++|+||.+.+ T Consensus 118 ~~~~~~~~il~~~~~H~s~~kaa~~~G~~~~~v~~~------~~~~id~~~l~~~~~~~~~~~vv~~~~~t~~G~~~~-- 189 (397) T 3f9t_A 118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK------EDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN-- 189 (397) T ss_dssp CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC------TTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC-- T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEEEC------CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEC-- T ss_conf 257868679984631667777777508614787304------554468888754431012342101443156551221-- Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCC--CCCCCCCCH--HHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH-HHHHHH Q ss_conf 99999999863787578417502355--688876522--3321026786899850400104631121143325-899999 Q T0591 199 EIGQIAALAARYGATVIADQLYSRLR--YAGASYTHL--RAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIAR 273 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii~De~Y~~l~--~~~~~~~~~--~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~-~~~i~~ 273 (406) +++|.++|++||+++++|.+|+... |........ .........--.+..|.+|.++.| ..+|+++.. +.+.+. T Consensus 190 -l~~I~~i~~~~g~~l~vD~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~D~~~~s~hK~l~~p-~g~g~~~~r~~~~~~~ 267 (397) T 3f9t_A 190 -IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCP-IPSGGILFKDIGYKRY 267 (397) T ss_dssp -HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCC-SSCEEEEESSGGGGGG T ss_pred -CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCEECCHHHHHH T ss_conf -54221211233322211434215746554315551587323455678647994443234666-7875540167899997 Q ss_pred HHHHHHHC------C-CCH-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECC Q ss_conf 99875203------6-761-24579999999856-525899999999999999999997279945535887307877668 Q T0591 274 MEKLQAIV------S-LRA-AGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP 344 (406) Q Consensus 274 l~~~~~~~------~-~~~-~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~ 344 (406) +..-..+. + .+. +...-.++...+.. +..-.++..++..++.+.+.+.|++.+...+..|..++..+ + T Consensus 268 ~~~~~~y~~~~~~~~~~gsr~~~~~~~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~p~~~iv~~-~-- 344 (397) T 3f9t_A 268 LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAI-E-- 344 (397) T ss_dssp TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEE-E-- T ss_pred HHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEE-C-- T ss_conf 4205640002344553344044443378899987667779999999999999999998708998970795448983-5-- Q ss_pred CCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH Q ss_conf 8788989999999986891896161026799985899850--997999999999999999 Q T0591 345 KLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 345 ~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~ 402 (406) ..+..++.++| .++||.+.. ..++..+|+++. ++.|++++.++.|+++.+ T Consensus 345 --~~~~~~l~~~L-~~~Gi~v~~-----~~~~~~lRi~~~~~~t~e~id~l~~~l~~i~k 396 (397) T 3f9t_A 345 --DEDYKEVCKKL-RDRGIYVSV-----CNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397) T ss_dssp --CTTHHHHHHHH-HHTTCBCEE-----CSSSSEEEEECCTTCCHHHHHHHHHHHHHHC- T ss_pred --CCCHHHHHHHH-HHCCCEEEC-----CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC T ss_conf --89999999999-977988972-----78997799997499999999999999999865 No 103 >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Probab=99.81 E-value=2.1e-16 Score=128.83 Aligned_cols=288 Identities=18% Similarity=0.157 Sum_probs=178.9 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC Q ss_conf 88878888988999999999986488678867078824872789999999972001010131055138999998----29 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g 146 (406) +.|+- .|.|. ++++.+.+....|. + ..++++.+..|+.. +.+++.+||+|+++...|..-...++. .| T Consensus 125 ~~YsR-~gnPT-~~~LE~~la~LE~g----~-~allfsSGMAAIsa-ll~ll~~Gd~vv~~~~~YggT~~l~~~~l~~~G 196 (464) T 1ibj_A 125 YDYTR-SGNPT-RDALESLLAKLDKA----D-RAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 196 (464) T ss_dssp CSBTT-TCCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT T ss_pred CEECC-CCCHH-HHHHHHHHHHHHCC----C-CEEEECCHHHHHHH-HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC T ss_conf 62508-98878-99999999998599----7-09995569999999-999857999999968979718999999985158 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC Q ss_conf 96999860446667766677889999985025403421566643233443789999999986378757841750235568 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYA 226 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~ 226 (406) .+...+. ..|.+.++++++++||+||+-+|+||+..+.+ +++|+++|+++|+++|+|..+.--.+ T Consensus 197 v~~~f~d-----------~~d~e~~e~~i~~~tklI~~EspsNP~l~v~D---i~~ia~iA~~~gi~vVVDNT~atP~~- 261 (464) T 1ibj_A 197 VVVKRVN-----------TTKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL- 261 (464) T ss_dssp CEEEEEC-----------TTSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT- T ss_pred CCCCCCC-----------CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCC---HHHHHHHHCCCCCEEEEECCCCCCCE- T ss_conf 7520153-----------21135666403767149996588986444466---68999874226513998466445324- Q ss_pred CCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH Q ss_conf 88765223321026786899850400104631-12114332-58999999987520367612457999999985652589 Q T0591 227 GASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWM 304 (406) Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 304 (406) ..++. . ..| |+++|.||.++-.| .=.|.++. ++.+...+...+.......+......+..-+ +-+ T Consensus 262 ---~~Pl~-~-GAD----IVihS~TKYi~GhsDv~~G~vv~~~~~~~~~l~~~~~~~G~~lsP~dA~Ll~RGL----~TL 328 (464) T 1ibj_A 262 ---SRPLE-L-GAD----IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI----KTM 328 (464) T ss_dssp ---CCGGG-T-TCS----EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH----TTH T ss_pred ---ECCCC-C-CCC----EEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----HHH T ss_conf ---20344-5-887----8983145422257555586476261777788876315778848989999998415----789 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCE-EECC-----------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE Q ss_conf 9999999999999999997279945-5358-----------------873078776688788989999999986891896 Q T0591 305 EDRIARHQAIRDELLHVLRGCEGVF-ARTP-----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVT 366 (406) Q Consensus 305 ~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p-----------------~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~ 366 (406) ..+.++..++...+.+.|.+.+.+. +..| -||++-+ .+ .+.+.+.++++.-.+.- T Consensus 329 ~lRm~~~~~NA~~vA~~L~~hp~V~~V~YPgL~s~p~~~~a~~~~~G~GgmlSf-~~-----~~~e~a~~f~d~L~lf~- 401 (464) T 1ibj_A 329 ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-IT-----GSVALSKHLVETTKYFS- 401 (464) T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEE-EC-----SCHHHHHHHHHHCSSSE- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEE-EE-----CCHHHHHHHHHCCCCCE- T ss_conf 999999999999999998608976265566533103599998569994089999-96-----99999999997069164- Q ss_pred ECCCCC------------------C-------CCCCEEEEEECC-CHHHHHHHHHHHHHHHHHH Q ss_conf 161026------------------7-------999858998509-9799999999999999985 Q T0591 367 PGTEFS------------------P-------HTADSVRLNFSQ-DHEAAVAAARRIVTLVERY 404 (406) Q Consensus 367 pG~~Fg------------------~-------~~~~~iRis~~~-~~e~l~~al~rl~~~~~~~ 404 (406) .|..+| . -.++.||+|++. +.|+|. +.|.++++++ T Consensus 402 ~a~SlGg~eSLi~~pas~th~~~~~e~r~~~Gi~~~liRlSVGLEd~eDLi---~DL~qALk~~ 462 (464) T 1ibj_A 402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLI---SDLDIAFKTF 462 (464) T ss_dssp ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHH---HHHHHHHHSC T ss_pred ECCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHH---HHHHHHHHHC T ss_conf 623578754032376211362489999997597969599985239999999---9999999667 No 104 >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Probab=99.81 E-value=3.6e-16 Score=127.22 Aligned_cols=283 Identities=22% Similarity=0.265 Sum_probs=180.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC Q ss_conf 88878888988999999999986488678867078824872789999999972001010131055138999998----29 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g 146 (406) +-|+-. |.|. ++++.+.+....|. + ..++++.+..|+..++.+++.+||+|++.+..|......++. .| T Consensus 57 ~~YsR~-~nPt-~~~le~~la~Legg----~-~a~~~sSGmaAi~~~l~~~~~~gd~vi~~~~~Yg~t~~l~~~~~~~~g 129 (398) T 1gc0_A 57 HFYSRI-SNPT-LNLLEARMASLEGG----E-AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG 129 (398) T ss_dssp -------CCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT T ss_pred CEECCC-CCHH-HHHHHHHHHHHHCC----C-EEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC T ss_conf 501289-8868-99999999998399----7-079972635887744303478999799703567726899887653125 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC Q ss_conf 96999860446667766677889999985025403421566643233443789999999986378757841750235568 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYA 226 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~ 226 (406) .++..+. .-|+++++++++++||+|++-+|.|||..+.+ +++|+++|+++|+++++|+.+..-.+ T Consensus 130 i~~~~~d-----------~~d~~~~~~~i~~~tklI~~EspsNP~l~v~D---i~~i~~iA~~~g~~lvVDnT~atP~~- 194 (398) T 1gc0_A 130 VKLRHVD-----------MADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYL- 194 (398) T ss_dssp CEEEEEC-----------TTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHH- T ss_pred CCCCCCC-----------CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCC---HHHHHHHHHHCCCCEEEECCCCCCCE- T ss_conf 5445689-----------77899999865877618999467886656557---69999999981992884055345450- Q ss_pred CCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 88765223321026786899850400104631-12114332589999999--8752036761245799999998565258 Q T0591 227 GASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARME--KLQAIVSLRAAGYSQAVLRGWFDEAPGW 303 (406) Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~--~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 303 (406) ..++ .. ..| |+++|.+|.++-.| .=.|.++++++.+.+++ .++.......++.....+..-+ +- T Consensus 195 ---~~Pl-~~-GaD----iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~da~ll~rgl----~T 261 (398) T 1gc0_A 195 ---QRPL-EL-GAD----LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGI----KT 261 (398) T ss_dssp ---CCGG-GG-TCS----EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHH----TT T ss_pred ---ECCC-CC-CCC----EEEEECCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC----CH T ss_conf ---0565-35-577----79950325531466268762467789999999999998048878868889987073----07 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCE-EECC-----------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE Q ss_conf 99999999999999999997279945-5358-----------------87307877668878898999999998689189 Q T0591 304 MEDRIARHQAIRDELLHVLRGCEGVF-ARTP-----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVV 365 (406) Q Consensus 304 ~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p-----------------~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v 365 (406) +..+.++..++...+.+.|.+.+.+. +..| .||++. ..+. .+.+-+.++++.-.+ + T Consensus 262 l~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~s-f~l~----~~~~~a~~f~d~L~l-~ 335 (398) T 1gc0_A 262 LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIA-FELK----GGIGAGRRFMNALQL-F 335 (398) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEE-EEET----THHHHHHHHHHHCSS-S T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEE-EEEC----CCHHHHHHHHHHCCC-C T ss_conf 899999998889999999974766443355223678157798632799998789-8653----999999999983894-6 Q ss_pred EECCCCCC-------------------------CCCCEEEEEECC-CHHHHHHHH Q ss_conf 61610267-------------------------999858998509-979999999 Q T0591 366 TPGTEFSP-------------------------HTADSVRLNFSQ-DHEAAVAAA 394 (406) Q Consensus 366 ~pG~~Fg~-------------------------~~~~~iRis~~~-~~e~l~~al 394 (406) ..|..+|. -.++.||||++. +.|+|.+-+ T Consensus 336 ~~a~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlE~~~DLi~Dl 390 (398) T 1gc0_A 336 SRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADV 390 (398) T ss_dssp EECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHH T ss_pred EECCCCCCCCCEEECCHHCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHH T ss_conf 6645678767220175210520189999986697949599997019999999999 No 105 >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma- family, lyase; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Probab=99.81 E-value=5.7e-16 Score=125.92 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=155.7 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC Q ss_conf 88878888988999999999986488678867078824872789999999972001010131055138999998----29 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g 146 (406) +.|+- .|.| -++++.+.+....|. + ..++++.+..|+..++.+++.+||+|++....|..-...++. .| T Consensus 106 ~~YsR-~~NP-T~~~LE~~lA~LEgg----~-~al~fsSGMAAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~~~~~G 178 (445) T 1qgn_A 106 FEYGR-YGNP-TTVVLEEKISALEGA----E-STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG 178 (445) T ss_dssp CCBGG-GCCH-HHHHHHHHHHHHHTC----S-EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT T ss_pred CEECC-CCCH-HHHHHHHHHHHHHCC----C-EEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCC T ss_conf 35539-9886-799999999998399----7-389965899999999996178999799756664246677753202467 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHH-HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC Q ss_conf 969998604466677666778899999-8502540342156664323344378999999998637875784175023556 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEE-AFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~-~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406) .+...+. ..+.++.++ ..+++||+||+-+|.||+..+.. +++|+++|+++|+++++|+.+.--.+ T Consensus 179 i~~~~~d-----------~~~~~~~~~~~~~~~t~lv~~EspsNP~l~v~D---i~~ia~iA~~~g~~lvVDNT~atP~~ 244 (445) T 1qgn_A 179 ITATVID-----------PADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN 244 (445) T ss_dssp CEEEEEC-----------SSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT T ss_pred CEEEECC-----------CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---HHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 2465337-----------774277887640466408995068997765567---79999999872997998778426155 Q ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH Q ss_conf 8887652233210267868998504001046311-211433258999999987520367612457999999985652589 Q T0591 226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-RLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWM 304 (406) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 304 (406) ..++ ..+ .| |+++|+||.++-.|= =.|.++++++++..++..+.......++.....+.. . -+-+ T Consensus 245 ----~~PL-~~G-AD----IVvhS~TKyi~Ghsdv~gG~v~~~~~~~~~~~~~~~~~G~~lsp~da~lllr---G-L~TL 310 (445) T 1qgn_A 245 ----QKAL-ALG-AD----LVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIR---G-MKTL 310 (445) T ss_dssp ----CCTT-TTT-CS----EEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHH---H-GGGH T ss_pred ----CCCH-HHC-CC----EEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHH---H-CHHH T ss_conf ----8752-317-76----8998622304788763123133114577788763056676279899999985---1-5389 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCE-EECC Q ss_conf 9999999999999999997279945-5358 Q T0591 305 EDRIARHQAIRDELLHVLRGCEGVF-ARTP 333 (406) Q Consensus 305 ~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p 333 (406) ..+.++..++...+.+.|.+.+.+. +..| T Consensus 311 ~lRm~r~~~nA~~vA~~L~~hp~V~~V~yP 340 (445) T 1qgn_A 311 HLRVQQQNSTALRMAEILEAHPKVRHVYYP 340 (445) T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 999999999999999999609985279788 No 106 >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Probab=99.80 E-value=1.4e-16 Score=130.11 Aligned_cols=282 Identities=16% Similarity=0.188 Sum_probs=171.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC Q ss_conf 88878888988999999999986488678867078824872789999999972001010131055138999998----29 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g 146 (406) +.|+-. |.|. .+++.+.+....|. ++-+++ +.++.++.. +.+++.|||+|+++...|......+.. .| T Consensus 59 ~~Y~R~-~nPt-~~~LE~~lA~leg~----e~al~~-sSGmAA~~a-il~ll~~GD~VI~~~~~y~~t~~~~~~~~~~~g 130 (403) T 3cog_A 59 FEYSRS-GNPT-RNCLEKAVAALDGA----KYCLAF-ASGLAATVT-ITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 130 (403) T ss_dssp --------CHH-HHHHHHHHHHHHTC----SEEEEE-SCHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGT T ss_pred CEECCC-CCHH-HHHHHHHHHHHHCC----CEEEEE-CCHHHHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 513189-8866-99999999998499----839996-649999999-999857999899927863589999999986068 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCCCCC Q ss_conf 96999860446667766677889999985025403421566643233443789999999986378-75784175023556 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLRY 225 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~-~~ii~De~Y~~l~~ 225 (406) .++..+. ..|++.++++++++||+|++.+|+||||.+.+ +++|+++|++|| +++++|..+..-.+ T Consensus 131 v~v~~~d-----------~~D~~~le~ai~~~tklV~vEspsNp~g~v~D---i~~I~~ia~~~G~i~lvvDnt~a~~~~ 196 (403) T 3cog_A 131 LKISFVD-----------CSKIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403) T ss_dssp CEEEEEC-----------TTSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTT T ss_pred EEEEEEC-----------CCCHHHHHHHCCCCCCEEEEECCCCCCCEECC---HHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 5999859-----------99899999746568868999788898886376---799999998718971762045336400 Q ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 888765223321026786899850400104631-1211433-25899999998752036761245799999998565258 Q T0591 226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAF-GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGW 303 (406) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~-~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 303 (406) ..++ ... .| |+++|+||.++-.| .-.|.++ .++++.++++..+.......+...-..+..- -+- T Consensus 197 ----~~pl-~~G-AD----ivv~S~tKyl~Gh~d~~gG~vv~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rg----l~T 262 (403) T 3cog_A 197 ----QRPL-ALG-AD----ISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRG----LKT 262 (403) T ss_dssp ----CCTT-TTT-CS----EEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----HTT T ss_pred ----CCCC-CCC-EE----EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC----CCC T ss_conf ----2354-456-46----998503134457887200531478599999999887435774899999999756----985 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCE-EECCC-----------------CCEEEEEECCCCCCCHHHHHHHHHHHCCEEE Q ss_conf 99999999999999999997279945-53588-----------------7307877668878898999999998689189 Q T0591 304 MEDRIARHQAIRDELLHVLRGCEGVF-ARTPQ-----------------AGSYLFPRLPKLAVAPAEFVKILRLQAGVVV 365 (406) Q Consensus 304 ~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~-----------------gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v 365 (406) +..+.++..++...+.+.|...+.+. +..|. ||+ +.+.+.+ +.+-+.++++.-.+.. T Consensus 263 l~~R~~~~~~nA~~lA~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~-~sf~l~~----~~~~~~~f~~~l~l~~ 337 (403) T 3cog_A 263 LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGM-VTFYIKG----TLQHAEIFLKNLKLFT 337 (403) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSE-EEEEESS----CHHHHHHHHHHCSSSE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHCCCCCEE-EEEEECC----CHHHHHHHHHCCCCCE T ss_conf 7889999999999999999968993579758988882199999618998706-7989769----8999999997389355 Q ss_pred EECCCCCC-------------------------CCCCEEEEEECC-CHHHHHHHH Q ss_conf 61610267-------------------------999858998509-979999999 Q T0591 366 TPGTEFSP-------------------------HTADSVRLNFSQ-DHEAAVAAA 394 (406) Q Consensus 366 ~pG~~Fg~-------------------------~~~~~iRis~~~-~~e~l~~al 394 (406) .|..+|. -.++.||||++. +.|+|.+-+ T Consensus 338 -~a~SlG~~~SLi~~pa~~sh~~~~~~~r~~~Gi~~~liRlsvGlE~~eDLi~Dl 391 (403) T 3cog_A 338 -LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDL 391 (403) T ss_dssp -ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHH T ss_pred -ECCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHH T ss_conf -546777756240076522432289999997598949599995859999999999 No 107 >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Probab=99.80 E-value=1.9e-16 Score=129.10 Aligned_cols=327 Identities=15% Similarity=0.128 Sum_probs=193.9 Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCC---- Q ss_conf 9999999808788887888898899999999998648867886707882487278999999997200101013105---- Q T0591 59 DLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPD---- 134 (406) Q Consensus 59 ~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~---- 134 (406) +.+..++.. +...|+...+..+|.+.+++++ |. +.++.|++++++...++.+++.+||.+++.... T Consensus 57 ~~~~a~~~~-gd~~y~~~~~~~~le~~~a~~~----g~-----~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~~~ 126 (467) T 2oqx_A 57 QSMQAAMMR-GDEAYSGSRSYYALAESVKNIF----GY-----QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVA 126 (467) T ss_dssp HHHHHHTTS-CCCCSSSCHHHHHHHHHHHHHH----CC-----SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEE T ss_pred HHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHH----CC-----CEEEECCCCHHHHHHHHHHHHHHCCEECCCCCCCEEE T ss_conf 999986045-8610158931999999999986----99-----8799999719999999999986174144778775798 Q ss_pred -----CHHHHHHHHHHCCEEEEEEECCCCC----CCCCCCCCHHHHHHHHCC----CCEEEECCCCCCCC-CCCCCHHHH Q ss_conf -----5138999998299699986044666----776667788999998502----54034215666432-334437899 Q T0591 135 -----YFANRKLVEFFEGEMVPVQLDYVSA----DETRAGLDLTGLEEAFKA----GARVFLFSNPNNPA-GVVYSAEEI 200 (406) Q Consensus 135 -----y~~~~~~~~~~g~~~v~v~~~~~~~----~~~~~~~d~~~l~~~~~~----~~k~i~l~~P~NPT-G~~~s~~~l 200 (406) |..........|++.+.++.+.... ......+|++++++.+++ +++++++.++||.. |..++.+++ T Consensus 127 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 206 (467) T 2oqx_A 127 FSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANL 206 (467) T ss_dssp EESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHH T ss_pred EECCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHH T ss_conf 50776602379999819855214652345665445445665999999886336866412799855420275044799999 Q ss_pred HHHHHHHHHCCCEEEECCCCCCC----------CCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 99999986378757841750235----------56888765223321026786899850400104631121143325899 Q T0591 201 GQIAALAARYGATVIADQLYSRL----------RYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 201 ~~i~~~a~~~~~~ii~De~Y~~l----------~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) ++|.++|++||+++++|+++... .|.+.....+..... ...-++..|++|.++ +.+.|+++.+++. T Consensus 207 ~~i~~~a~~~~~~l~~D~a~~~~~~~~~~~~~~~~~g~~~~~i~~~~~--~~~d~~s~s~~K~~~--~~~gG~i~~~~~~ 282 (467) T 2oqx_A 207 KAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY--KYADMLAMSAKKDAM--VPMGGLLCMKDDS 282 (467) T ss_dssp HHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG--GGCSEEEEESSSTTC--CSSCEEEEECSGG T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCCCHHHCCCCCC--CCCCEEEECCCCCCC--CCCCCEEECCCHH T ss_conf 999999998499899967455530010124542226875311145555--678889946877666--6776513127177 Q ss_pred HH-HHHHHHH-------HC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEE Q ss_conf 99-9998752-------03-676124579999999856525899999999999999999997279945535887307877 Q T0591 271 IA-RMEKLQA-------IV-SLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFP 341 (406) Q Consensus 271 i~-~l~~~~~-------~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~ 341 (406) +. ..+..+. .. ..+.......+....+.... ..+..++..++.+.+.+.|.+. ++.+. |.++..+++ T Consensus 283 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~r~~~a~~L~~~L~~~-~~~v~-~~~~~~~~~ 358 (467) T 2oqx_A 283 FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM--NLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFV 358 (467) T ss_dssp GHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEE T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-CCCCC-CCCCCEEEE T ss_conf 7777765420365456650011356679999999988777--7799999999999999999866-99545-777641464 Q ss_pred EC----CC---CCCCHHHHHHHHHHHCCEEEE-ECCCC-------C---CCCCCEEEEEEC---CCHHHHHHHHHHHHHH Q ss_conf 66----88---788989999999986891896-16102-------6---799985899850---9979999999999999 Q T0591 342 RL----PK---LAVAPAEFVKILRLQAGVVVT-PGTEF-------S---PHTADSVRLNFS---QDHEAAVAAARRIVTL 400 (406) Q Consensus 342 ~~----~~---~~~~~~~~~~~Ll~~~gV~v~-pG~~F-------g---~~~~~~iRis~~---~~~e~l~~al~rl~~~ 400 (406) +. +. .......+...++.+.||... .|..+ + +.....+|+++. .++|+++..++.|+++ T Consensus 359 d~~~~~~~~~~~~~~~~~~~~~l~~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRl~ip~~~~T~eeiD~vve~l~~v 438 (467) T 2oqx_A 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467) T ss_dssp EHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH T ss_pred EHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 23765688766554248899999997294201376654454555686566766607986788889999999999999999 Q ss_pred HHH Q ss_conf 998 Q T0591 401 VER 403 (406) Q Consensus 401 ~~~ 403 (406) .++ T Consensus 439 ~~~ 441 (467) T 2oqx_A 439 KEN 441 (467) T ss_dssp HHS T ss_pred HHH T ss_conf 997 No 108 >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Probab=99.80 E-value=5.1e-17 Score=132.97 Aligned_cols=317 Identities=15% Similarity=0.160 Sum_probs=193.9 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 34156786788788899999999998087888878888988999999999986488678867078824872789999999 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAA 120 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~ 120 (406) |.|+ .|.... .-.+++.+.+.++-..+.++. ..++.+.+++++ |.. .++.++.+|.|+.+++.+ T Consensus 27 i~~~--~p~~~~---~e~~~~~~~~~~~~~~~~G~~--~~~fE~~~a~~~----g~~-----~av~~~SGT~Al~lal~~ 90 (391) T 3dr4_A 27 ISVA--APRLDG---NERDYVLECMDTTWISSVGRF--IVEFEKAFADYC----GVK-----HAIACNNGTTALHLALVA 90 (391) T ss_dssp -CCC--CCCCCS---SHHHHHHHHHHHTCCSSCSHH--HHHHHHHHHHHH----TCS-----EEEEESSHHHHHHHHHHH T ss_pred CCCC--CCCCCH---HHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHH----CCC-----EEEEECCHHHHHHHHHHH T ss_conf 0566--999998---999999999975971789979--999999999986----969-----599966899999999998 Q ss_pred H-HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH Q ss_conf 9-720010101310551389999982996999860446667766677889999985025403421566643233443789 Q T0591 121 T-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEE 199 (406) Q Consensus 121 l-~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~ 199 (406) + +.+||+|+++..+|.+....+...|++++.+.++ +..+.+|+++++++++++||+|++++ +.|... + T Consensus 91 l~~~~gdeVI~~~~~~~~~~~~~~~~g~~~v~~Di~-----~~~~~id~~~le~~i~~ktkaIi~vh---~~G~~~---d 159 (391) T 3dr4_A 91 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-----PRTFNLDAAKLEALITPRTKAIMPVH---LYGQIC---D 159 (391) T ss_dssp HTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-----TTTCSBCGGGSGGGCCTTEEEECCBC---GGGCCC---C T ss_pred HCCCCCCEEEEECCCCCCCCCHHHHCEEEEEECCCC-----CCCCCCCHHHHHHHCCCCCCEEEEEC---CCCCHH---C T ss_conf 288997989983143322221011100389613577-----53468899999984589981999979---877710---7 Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEECC--HHCCCCCCCCHHHH-HHHHHHHHHH Q ss_conf 9999999863787578417502355-688876522332102678689985040--01046311211433-2589999999 Q T0591 200 IGQIAALAARYGATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGPS--KTESLSGYRLGVAF-GSRAIIARME 275 (406) Q Consensus 200 l~~i~~~a~~~~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~GlRiG~~~-~~~~~i~~l~ 275 (406) +++|.++|+++|++||+|.+++... +.+... .... .+.+.||. |... .|- -|+++ -++++...++ T Consensus 160 ~~~i~~iakk~~i~lIeD~A~a~G~~~~~~~~-------g~~g--d~~~~Sf~~~k~~~-~g~-GG~i~t~~~~~~~~~~ 228 (391) T 3dr4_A 160 MDPILEVARRHNLLVIEDAAEAVGATYRGKKS-------GSLG--DCATFSFFGNAIIT-TGE-GGMITTNDDDLAAKMR 228 (391) T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEET-------TSSS--SEEEEECBTTSSSC-CBS-CEEEEESCHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEEECHHHHCCCCCCEEC-------CCCC--CCEEECCCCCCEEE-CCC-CCCEEEECCCCCCCCC T ss_conf 99999999984999999771120776388113-------4578--70585367752132-267-6630233022221101 Q ss_pred HHHHHC------------CC--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-----CCC Q ss_conf 875203------------67--61245799999998565258999999999999999999972799455358-----873 Q T0591 276 KLQAIV------------SL--RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-----QAG 336 (406) Q Consensus 276 ~~~~~~------------~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-----~gg 336 (406) ..+... .. ..+.+....+...+ ..+.+..++.++..+.+.+.|.+++++..... ... T Consensus 229 ~~~~~g~~~~~~~~~~~~g~n~r~s~i~Aaigl~ql----~~l~~~~~~R~~i~~~y~~~L~~~~~~~~~~~~~~~~~~~ 304 (391) T 3dr4_A 229 LLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL----ERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHV 304 (391) T ss_dssp HHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 222466632123321237877667779999989988----7514421123121123322233333334576422222220 Q ss_pred EEE-EEECCC-CCCCHHHHHHHHHHHCCEEEEECCC-------CCC--CC---------CCEEEEEEC--CCHHHHHHHH Q ss_conf 078-776688-7889899999999868918961610-------267--99---------985899850--9979999999 Q T0591 337 SYL-FPRLPK-LAVAPAEFVKILRLQAGVVVTPGTE-------FSP--HT---------ADSVRLNFS--QDHEAAVAAA 394 (406) Q Consensus 337 ~~~-w~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~-------Fg~--~~---------~~~iRis~~--~~~e~l~~al 394 (406) ++. .+.+.+ ...+..++.+.| .+.||.+.|... |.. .. ...+.|.+- .++++++.-+ T Consensus 305 ~~~~~i~l~~~~~~~rd~l~~~L-~~~GI~~r~~~~plh~~~~~~~~~~~~~p~ae~i~~~~i~LP~~~~lt~~di~~Ii 383 (391) T 3dr4_A 305 FWMYTVRLGEGLSTTRDQVIKDL-DALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVI 383 (391) T ss_dssp CSSEEEEECSSCSSCHHHHHHHH-HHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCHHHCHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHH T ss_conf 01100023332345599999999-98799767738564549777746889997999998298991588999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q T0591 395 RRIVTL 400 (406) Q Consensus 395 ~rl~~~ 400 (406) +.|+++ T Consensus 384 ~~ik~i 389 (391) T 3dr4_A 384 AALDQV 389 (391) T ss_dssp HHHHTT T ss_pred HHHHHH T ss_conf 999998 No 109 >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} Probab=99.79 E-value=1.8e-16 Score=129.21 Aligned_cols=318 Identities=14% Similarity=0.075 Sum_probs=188.1 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHH Q ss_conf 888999999999980878888788889889999999999864886788670788248727899999999-7200101013 Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIV 131 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~ 131 (406) |..+.++.+.+.+.++...+++|. ..+|.+.++++ ++.. ...++.++++|.||.++++++ +.+||+|++| T Consensus 14 ~~~~~~~~~~~~~~s~~~~~~G~~--~~~fE~~~a~~----~~~~---~~~~~~~~sgt~al~~al~~l~~~~gdeVi~p 84 (377) T 3ju7_A 14 PVIEYLDELKEIDASHIYTNYGPI--NQRFEQTIMSG----FFQN---RGAVTTVANATLGLMAAIQLKKRKKGKYALMP 84 (377) T ss_dssp CGGGGHHHHHHHHHHTCCSSSCHH--HHHHHHHHHHH----TSTT---CSEEEEESCHHHHHHHHHHHHSCTTCCEEEEE T ss_pred CHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHH----HCCC---CCEEEEECHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 669999999999966986579979--99999999997----5899---99999812499999999998098989989984 Q ss_pred HCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 10551389999982996999860446667766677889999985025403421566643233443789999999986378 Q T0591 132 QPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG 211 (406) Q Consensus 132 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~ 211 (406) ..+|.+....+..+|++++.+.++ .+.+.+|++.+++++++.|+.+.+..|.|+.|.....++ |.++| +++ T Consensus 85 ~~t~~a~~~~i~~~G~~pvfvDvd-----~~~~~id~~~l~~~I~~~t~~~~~ii~~~~~G~~~d~~~---i~~i~-k~~ 155 (377) T 3ju7_A 85 SFTFPATPLAAIWCGLEPYFIDIS-----IDDWYMDKTVLWDKIEELKEEVAIVVPYATFGSWMNLEE---YEELE-KKG 155 (377) T ss_dssp SSSCTHHHHHHHHTTCEEEEECBC-----TTTCSBCHHHHHHHHHHHGGGEEEECCBCGGGBCCCCHH---HHHHH-HTT T ss_pred ECCCCCCCCHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---HHHHC-CCC T ss_conf 035632101134534332113333-----332222222333322233344433333333322110024---66541-344 Q ss_pred CEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHC-------- Q ss_conf 7578417502355-68887652233210267868998504001046311211433-2589999999875203-------- Q T0591 212 ATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF-GSRAIIARMEKLQAIV-------- 281 (406) Q Consensus 212 ~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~-~~~~~i~~l~~~~~~~-------- 281 (406) ++||+|.+++... +.+... +....+ +.++||...-.+++..-|.++ .++++.+.++..+... T Consensus 156 i~lIeD~a~a~g~~~~~~~~------g~~~gd--~~~fSf~~~K~l~~g~GG~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 227 (377) T 3ju7_A 156 VPVVVDAAPGFGLMNGGMHY------GQDFSG--MIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECT 227 (377) T ss_dssp CCBEEECTTCTTCEETTEET------TTTCSS--EEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBC T ss_pred CCCCCCCCCHHCCCCCCCCC------CCCHHH--HHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 33233322000013322233------431144--4311320000122234320002205777666553012223322233 Q ss_pred ----CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE--ECC--CCC--EEEEEECCCCCCCHH Q ss_conf ----6761245799999998565258999999999999999999972799455--358--873--078776688788989 Q T0591 282 ----SLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA--RTP--QAG--SYLFPRLPKLAVAPA 351 (406) Q Consensus 282 ----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~--~~p--~gg--~~~w~~~~~~~~~~~ 351 (406) ....+.+....+..-|+. +.+..++.++..+...+.|.+.+.... ..+ ... +|+.+-++. ..+.. T Consensus 228 ~~G~n~~~~~l~Aaigl~qL~~----ld~~~~~R~~ia~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~r~ 302 (377) T 3ju7_A 228 MMGFNCKMSEYAAAIGIATMKK----WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE-EVRNK 302 (377) T ss_dssp SSCCBCCCCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-TSCHH T ss_pred CCCCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHH T ss_conf 4433211112331033446776----777754445356677776530334321122232333333222223410-56599 Q ss_pred HHHHHHHHHCCEEEEECC--------CCCC--CC---------CCEEEEEEC--CCHHHHHHHHHHHHHHHH Q ss_conf 999999986891896161--------0267--99---------985899850--997999999999999999 Q T0591 352 EFVKILRLQAGVVVTPGT--------EFSP--HT---------ADSVRLNFS--QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 352 ~~~~~Ll~~~gV~v~pG~--------~Fg~--~~---------~~~iRis~~--~~~e~l~~al~rl~~~~~ 402 (406) ++.+.| .++||-+.+.. .|-. .+ ...++|.+- .++++++..++.|++.+- T Consensus 303 ~l~~~L-~~~gI~~~~~y~p~~~~~~~~~~~~~~~~p~a~~i~~~~l~LP~~~~lt~~di~~I~~~l~~~v~ 373 (377) T 3ju7_A 303 QVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVV 373 (377) T ss_dssp HHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC--- T ss_pred HHHHHH-HHCCCCEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999-98799856558972001788706997899899999848898879999899999999999999998 No 110 >3e6g_A Xometc, cystathionine gamma-lyase-like protein; bacterial blight, cystathionine lyase, reverse transsulfuration pathway; 2.80A {Xanthomonas oryzae PV} Probab=99.79 E-value=1.2e-15 Score=123.60 Aligned_cols=282 Identities=16% Similarity=0.138 Sum_probs=172.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHH-----HH Q ss_conf 8887888898899999999998648867886707882487278999999997200101013105513899999-----82 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FF 145 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~-----~~ 145 (406) +-|+-. |.|. .+++.+.+....|. ++-++ ++.+..++.. +..++.+||+|++..+.|......+. .. T Consensus 59 ~~Y~R~-~nPt-~~~le~~la~Leg~----~~a~~-~sSGmAa~~~-~l~~l~~Gd~vv~~~~~yg~t~~~~~~~~~~~~ 130 (400) T 3e6g_A 59 FEYSRT-HNPT-RFAYERCVAALEGG----TRAFA-FASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTA 130 (400) T ss_dssp -----C-CCHH-HHHHHHHHHHHHTC----SEEEE-ESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHHHHHHH T ss_pred CCCCCC-CCHH-HHHHHHHHHHHHCC----CEEEE-CCCHHHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCHHHCCCC T ss_conf 765289-8877-99999999997398----53665-3646779999-987515898899747987871011500002464 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC Q ss_conf 99699986044666776667788999998502540342156664323344378999999998637875784175023556 Q T0591 146 EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406) Q Consensus 146 g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406) |.++..+. .-|+++++++++++||+|++-+|.||+..+.. +++|+++|+++|+++|+|+.+..-.+ T Consensus 131 gi~~~~~d-----------~~d~~~~~~ai~~~t~li~~EspsNP~l~v~D---i~~i~~iA~~~gi~~vVDnT~atP~~ 196 (400) T 3e6g_A 131 GLDFSFVD-----------LTDPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPML 196 (400) T ss_dssp CCEEEEEC-----------TTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECSSSCTTT T ss_pred EEEEEEEC-----------CCCHHHHHHHCCCCCEEEEECCCCCCCEEECC---HHHHHHHHHHCCCEEEEECCCCCHHC T ss_conf 17999816-----------99989999753768559995178997400056---69999999875986998156443000 Q ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCC-HHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH Q ss_conf 888765223321026786899850400104631121-1433--2589999999875203676124579999999856525 Q T0591 226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL-GVAF--GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG 302 (406) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~~~--~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~ 302 (406) ..++ ..+ .| |+++|+||.++-.|=-+ |.++ ..+.+.+.+...+.......+......+..-++ T Consensus 197 ----~~Pl-~~G-aD----iVvhS~TKyi~Gh~d~~~G~vv~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~---- 262 (400) T 3e6g_A 197 ----QRPL-SLG-AD----LVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK---- 262 (400) T ss_dssp ----CCGG-GGT-CS----EEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT---- T ss_pred ----CCCH-HCC-CC----EEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC---- T ss_conf ----5750-207-99----899955502268885321225317718889999999987178688789999985407---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCE-EECCC-----------------CCEEEEEECCCCCCCHHHHHHHHHHHCCEE Q ss_conf 899999999999999999997279945-53588-----------------730787766887889899999999868918 Q T0591 303 WMEDRIARHQAIRDELLHVLRGCEGVF-ARTPQ-----------------AGSYLFPRLPKLAVAPAEFVKILRLQAGVV 364 (406) Q Consensus 303 ~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~-----------------gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~ 364 (406) -+..+.++..++...+.+.|...+.+. +..|. ||++.+ .+. .+.+-+.++++.-.+. T Consensus 263 TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~l~~~~~~g~gg~~sf-~l~----~~~~~~~~f~d~L~lf 337 (400) T 3e6g_A 263 TLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSI-VLK----GGFDAAKRFCEKTELF 337 (400) T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EET----THHHHHHHHHHHCSSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEEEE-EEC----CCHHHHHHHHHHCCCC T ss_conf 29999999999999999999768882669899999992099998618998517999-981----8999999999709935 Q ss_pred EEECCCCCC-------------------------CCCCEEEEEECC-CHHHHHHHH Q ss_conf 961610267-------------------------999858998509-979999999 Q T0591 365 VTPGTEFSP-------------------------HTADSVRLNFSQ-DHEAAVAAA 394 (406) Q Consensus 365 v~pG~~Fg~-------------------------~~~~~iRis~~~-~~e~l~~al 394 (406) ..|..+|. -.++.||||++. +.|+|.+-+ T Consensus 338 -~~a~SlG~~~SLi~~pa~~th~~~~~~~r~~~Gi~~~liRlSvGlEd~~DLi~Dl 392 (400) T 3e6g_A 338 -TLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDL 392 (400) T ss_dssp -EECSCCCCSSCEEECTTTTTTCSSCCTTTTTSSCCSSEEEEECCSSCHHHHHHHH T ss_pred -EEEECCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCEEEEEEECCCHHHHHHHH T ss_conf -4602678776166475221454499999996597929699987019999999999 No 111 >3jzl_A Putative cystathionine beta-lyase involved in aluminum resistance; YP_013912.1, structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Probab=99.79 E-value=2.6e-17 Score=134.95 Aligned_cols=227 Identities=14% Similarity=0.084 Sum_probs=147.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEE--ECCCCHHHHHHHHHHHHCCHHHHHHH-CCCHHHHHHHH----------HHCCE Q ss_conf 9999999999864886788670788--24872789999999972001010131-05513899999----------82996 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLII--TPGTQGALFLAVAATVARGDKVAIVQ-PDYFANRKLVE----------FFEGE 148 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~i--t~G~~~~l~~~~~~l~~pGd~Vl~~~-P~y~~~~~~~~----------~~g~~ 148 (406) =|+++-+.+.+.+|. |+-++. .+.+++++..++.+++.|||+|++.. +.|......+. ..|.+ T Consensus 60 gr~~LE~~~A~LfGa----EaALvrp~fsSGT~Ai~~AL~all~PGDeVI~~~g~~Y~tl~~vig~~~~~~~sL~~~GV~ 135 (409) T 3jzl_A 60 GRDTLERVYATVFKT----EAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIG 135 (409) T ss_dssp HHHHHHHHHHHHHTC----SEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCE T ss_pred CHHHHHHHHHHHHCC----CEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCE T ss_conf 699999999988398----2068636876699999999998568999899846996377999865541224358873956 Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCCC Q ss_conf 9998604466677666778899999850254034215-6664323344378999999998637--875784175023556 Q T0591 149 MVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS-NPNNPAGVVYSAEEIGQIAALAARY--GATVIADQLYSRLRY 225 (406) Q Consensus 149 ~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~-~P~NPTG~~~s~~~l~~i~~~a~~~--~~~ii~De~Y~~l~~ 225 (406) ...+++. .+..+|+++++++++++||++++. ++++|++.+++.+++++|+++|+++ ++++++|++|..+.+ T Consensus 136 ~~~v~l~------~~g~id~e~ie~aI~p~TKlV~Ie~S~~y~~~p~l~i~dI~~I~~lak~~~~~viv~vDn~yg~~v~ 209 (409) T 3jzl_A 136 YSSVPLL------ENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409) T ss_dssp EEECCCC------TTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS T ss_pred EEECCCC------CCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH T ss_conf 3524887------6564589999974467673799994478889997759999999999876189988998588754342 Q ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHCC Q ss_conf 888765223321026786899850400104631-1211433258999999987520367----61245799999998565 Q T0591 226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSL----RAAGYSQAVLRGWFDEA 300 (406) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~~~~~~~~~----~~~~~~q~a~~~~l~~~ 300 (406) ...+ + ... .| ++++|+||.++-.+ .--||+++++++|++...-...-.. +++.-. ...++. + T Consensus 210 ~~~P---~-~~G-AD----lV~~SltK~LGG~~ap~GG~IaGkkelIe~a~~rltapg~g~~~ga~~~~---~~~~~q-G 276 (409) T 3jzl_A 210 YQEP---P-EVG-AD----IIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYS---LLEMYQ-G 276 (409) T ss_dssp SCCS---G-GGT-CS----EEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTC---HHHHHH-H T ss_pred CCCH---H-HHC-CC----EEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCH---HHHHHH-H T ss_conf 0686---7-858-78----89999851268987765789971899999999887289643334758552---479864-4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 25899999999999999999997279945535 Q T0591 301 PGWMEDRIARHQAIRDELLHVLRGCEGVFART 332 (406) Q Consensus 301 ~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 332 (406) --...+...+-.+.+......|.++ |+.+.+ T Consensus 277 ~f~ap~~v~~a~k~~~~~a~~l~~~-g~~v~P 307 (409) T 3jzl_A 277 FFLAPHVTAQAIKGARFTAAMLAEF-GVEADP 307 (409) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEES T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC T ss_conf 2440799999999999999999967-996589 No 112 >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Probab=99.78 E-value=7e-17 Score=132.07 Aligned_cols=299 Identities=11% Similarity=0.090 Sum_probs=182.1 Q ss_pred HHHHHHHHHHHHHCCCCCC-CCCEEEEECCCCHHHHHHHHHHH---HCCHHHHHHHCCCHHH--HHHHHHHCCEEEEEEE Q ss_conf 8999999999986488678-86707882487278999999997---2001010131055138--9999982996999860 Q T0591 81 GIRDLLAPRLAAFTGAPVD-ARDGLIITPGTQGALFLAVAATV---ARGDKVAIVQPDYFAN--RKLVEFFEGEMVPVQL 154 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~~~-~~~~I~it~G~~~~l~~~~~~l~---~pGd~Vl~~~P~y~~~--~~~~~~~g~~~v~v~~ 154 (406) ++-+.+.+.+++.++.... ..+.|++|.++|.++..++..++ .|||+|++..-++++. ...++.+|.++..+.. T Consensus 38 ~~~~~~~~~lr~~~~~~~~~~~~~v~~tgsgT~a~e~~~~~l~~~~~~gd~vlv~~~g~~~~~~~~~a~~~g~~~~~v~~ 117 (385) T 2bkw_A 38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP 117 (385) T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999998201588872999938689999999998632237998268984203556777776654311333223 Q ss_pred CCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCCCC Q ss_conf 4466677666778899999850-25403421566643233443789999999986378--75784175023556888765 Q T0591 155 DYVSADETRAGLDLTGLEEAFK-AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG--ATVIADQLYSRLRYAGASYT 231 (406) Q Consensus 155 ~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~--~~ii~De~Y~~l~~~~~~~~ 231 (406) .+.+..+|++++++.++ ++++++.++..+|.||...+ +++|.++|++|+ +++++|.+.+. ...+ - T Consensus 118 -----~~~g~~~~~~~l~~~i~~~~~~~v~~~h~etstG~~~p---i~~I~~~~~~~g~~~l~vvDa~~s~---G~~p-i 185 (385) T 2bkw_A 118 -----LKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI---GCEE-F 185 (385) T ss_dssp -----SSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT---TTSC-C T ss_pred -----CCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCC---CHHHHHHHHHCCCCEEEEEECCCCH---HEEE-C T ss_conf -----45787576467999740577439999622112220367---2023455540476036773022320---0232-0 Q ss_pred CHHHHHCCCCCCEEEEEECCHHCC-CCCCCCHHHHHHHHHHHHHHHHH--------------------H-----HCCCCH Q ss_conf 223321026786899850400104-63112114332589999999875--------------------2-----036761 Q T0591 232 HLRAEAAVDAENVVTIMGPSKTES-LSGYRLGVAFGSRAIIARMEKLQ--------------------A-----IVSLRA 285 (406) Q Consensus 232 ~~~~~~~~~~~~~i~~~S~SK~~~-~~GlRiG~~~~~~~~i~~l~~~~--------------------~-----~~~~~~ 285 (406) .+.. ..--+++.|-.|.++ .|| +|+++.+++.++++.... . ..+.++ T Consensus 186 d~~~-----~~iD~~~~s~~K~l~gP~G--~g~l~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~T 258 (385) T 2bkw_A 186 EFDE-----WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFAT 258 (385) T ss_dssp CTTT-----TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSC T ss_pred CCCC-----CCEEEEEECCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 3555-----5338999547764457875--00677429987422201358888742010100357776420256777777 Q ss_pred HHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC--CC----CCEEEEEECCCCCCCHHHHHHHH Q ss_conf 245-7999999985652-5899999999999999999997279945535--88----73078776688788989999999 Q T0591 286 AGY-SQAVLRGWFDEAP-GWMEDRIARHQAIRDELLHVLRGCEGVFART--PQ----AGSYLFPRLPKLAVAPAEFVKIL 357 (406) Q Consensus 286 ~~~-~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p~----gg~~~w~~~~~~~~~~~~~~~~L 357 (406) +.. .-.++..+++... .-++...+++++..+.+.+.|.+-.++.... |+ .+. .-+.+| +..++.+. T Consensus 259 p~v~~i~~l~~al~~i~~~G~~~~~~r~~~l~~~l~~~L~~~l~~~~~~~~~~~~~~~~v-~~~~~p----~~~d~~~~- 332 (385) T 2bkw_A 259 PPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGL-TAVYVA----DPPDVIAF- 332 (385) T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSC-EEEECS----CHHHHHHH- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE-EEEECC----CHHHHHHH- T ss_conf 887999999999999986666776599999999999733320354332358544567756-987179----87999999- Q ss_pred HHHCCEEEEECCCCCCCCCCEEEEE-EC--CC---HHHHHHHHHHHHHHHHHHC Q ss_conf 9868918961610267999858998-50--99---7999999999999999856 Q T0591 358 RLQAGVVVTPGTEFSPHTADSVRLN-FS--QD---HEAAVAAARRIVTLVERYR 405 (406) Q Consensus 358 l~~~gV~v~pG~~Fg~~~~~~iRis-~~--~~---~e~l~~al~rl~~~~~~~r 405 (406) ++++||.+.+|.. +.-+...+||+ ++ .. .+.+..+++-|+..+++.| T Consensus 333 L~~~gi~i~~G~~-~~~~~~~~RIg~mG~~~~~~~i~~~~~~l~~l~~~L~~~k 385 (385) T 2bkw_A 333 LKSHGVVIAGGIH-KDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRKK 385 (385) T ss_dssp HHHTTEECBCCCC-TTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-- T ss_pred HHHCCEEEECCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9978939976676-0017998988188588857799999999999999997567 No 113 >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to P3F inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Probab=99.77 E-value=1.6e-15 Score=122.87 Aligned_cols=284 Identities=15% Similarity=0.182 Sum_probs=176.7 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC Q ss_conf 88878888988999999999986488678867078824872789999999972001010131055138999998----29 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g 146 (406) +-|+- .|.|.- +++.+.+....|. + ..++++.+..|+..++.+++.+||+|++..+.|......+.. .| T Consensus 74 ~~Y~R-~~nPt~-~~le~~la~LE~~----~-~a~~~sSGMaAI~~~~~~ll~~Gd~iv~~~~~Yg~T~~ll~~~l~~~G 146 (415) T 2fq6_A 74 LFYGR-RGTLTH-FSLQQAMCELEGG----A-GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 146 (415) T ss_dssp CCCTT-TCCHHH-HHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGT T ss_pred EEEEC-CCCHHH-HHHHHHHHHHHCC----C-EEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 66658-998659-9999999998298----6-189844879999999874057999476478786479999999877338 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEECCCCCCCC Q ss_conf 969998604466677666778899999850254034215666432334437899999999863--787578417502355 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAAR--YGATVIADQLYSRLR 224 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~--~~~~ii~De~Y~~l~ 224 (406) .+...+. .-|++++++++++++|++++-+|.||+..+.. +++++++|++ +++++|+|+.+.--. T Consensus 147 i~~~~~d-----------~~d~e~~~~~i~~~t~~v~~EspsNP~l~v~D---i~~i~~~a~~~~~g~~vvVDnT~atp~ 212 (415) T 2fq6_A 147 VTTSWFD-----------PLIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGV 212 (415) T ss_dssp CEEEEEC-----------TTCGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTT T ss_pred CEEEECC-----------CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCC---CHHHHHHHHHCCCCCEEEEECCCCCCE T ss_conf 0446359-----------99989999762755139997258887642136---299999987505796699977865510 Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 6888765223321026786899850400104631-121143325899999998752036761245799999998565258 Q T0591 225 YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGW 303 (406) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 303 (406) + ..++ .. ..| |+++|.+|.++-.+ .=.|.++++++..+.+...........+......+.. +-+- T Consensus 213 ~----~~Pl-~~-GaD----ivvhS~TKy~~Ghsdv~gG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r----gl~T 278 (415) T 2fq6_A 213 L----FKAL-DF-GID----VSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSR----GLRT 278 (415) T ss_dssp S----SCGG-GG-TCS----EEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHH----HHHH T ss_pred E----EECC-CC-CCE----EEEEECCCEECCCCCCCCCCEECCCHHHHHHHHHEECCCCCCCHHHHHHHHH----HHHH T ss_conf 1----1102-48-862----8997065012688888788550030233320011011576678278999984----4768 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEE-ECC-----------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE Q ss_conf 999999999999999999972799455-358-----------------87307877668878898999999998689189 Q T0591 304 MEDRIARHQAIRDELLHVLRGCEGVFA-RTP-----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVV 365 (406) Q Consensus 304 ~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p-----------------~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v 365 (406) +..+.++..++...+.+.|.+.+.+.. ..| .+|.+.+ .+.. ..+..+ +.+.++.-++. T Consensus 279 L~~R~~r~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~g~~G~~sf-~l~~-~~~~e~-~~~f~~~L~lf- 354 (415) T 2fq6_A 279 LGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSF-VLKK-KLNNEE-LANYLDNFSLF- 354 (415) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EESS-CCCHHH-HHHHHTTCSSC- T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE-EEEC-CCCHHH-HHHHHHCCCCC- T ss_conf 9999999999999999998518985545677767886699998615799874478-9943-689999-99999728906- Q ss_pred EECCCCCC-----------------------CCCCEEEEEECC-CHHHHHHH Q ss_conf 61610267-----------------------999858998509-97999999 Q T0591 366 TPGTEFSP-----------------------HTADSVRLNFSQ-DHEAAVAA 393 (406) Q Consensus 366 ~pG~~Fg~-----------------------~~~~~iRis~~~-~~e~l~~a 393 (406) ..|..||. -.++.||||++. +.|+|.+- T Consensus 355 ~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGlEd~~DLi~D 406 (415) T 2fq6_A 355 SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIAD 406 (415) T ss_dssp EECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHH T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHH T ss_conf 5866778876664078443544579237659996979998542999999999 No 114 >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (acoat), structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Probab=99.77 E-value=6.7e-16 Score=125.43 Aligned_cols=341 Identities=11% Similarity=0.081 Sum_probs=199.9 Q ss_pred CC-CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 89-83341567--8678878889999999999808788887888898899999999998648867886707882487278 Q T0591 37 EG-RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 37 ~~-~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) ++ +.|||..| ...+.+-.|.+.+++.+++.+... ....-.-+++..+++++.+..+ .+.+..++++++| T Consensus 38 dG~~yiD~~~g~g~~~lGh~~p~v~~Av~~q~~~~~~---~~~~~~~~~~~~lae~l~~~~~-----~~~~~~~~SGseA 109 (397) T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH---CSNLFWNRPQMELAELLSKNTF-----GGKVFFANTGTEA 109 (397) T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC---CCTTSEEHHHHHHHHHHHHTTT-----SCEEEEESSHHHH T ss_pred CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCC-----CCEEEEECCCHHH T ss_conf 9799998553888610168979999999999974567---6674126699999999887588-----6628874776289 Q ss_pred HHHHHHHHHH------C-CHHHHHHHCCCHHHHHHH-HHHCCEEEEEEECCC-CCCCCCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 9999999972------0-010101310551389999-982996999860446-667766677889999985025403421 Q T0591 114 LFLAVAATVA------R-GDKVAIVQPDYFANRKLV-EFFEGEMVPVQLDYV-SADETRAGLDLTGLEEAFKAGARVFLF 184 (406) Q Consensus 114 l~~~~~~l~~------p-Gd~Vl~~~P~y~~~~~~~-~~~g~~~v~v~~~~~-~~~~~~~~~d~~~l~~~~~~~~k~i~l 184 (406) ...++..... + ...++....+|++..... ...|......+.... +.......-+++++++.+.+++.++++ T Consensus 110 ~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~iaavIi 189 (397) T 2ord_A 110 NEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFL 189 (397) T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEE T ss_conf 99999999997376787764488313887788655401368843457888999984344866099999736897679999 Q ss_pred CCC-CCCCCCC-CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCH Q ss_conf 566-6432334-43789999999986378757841750235568887652233210267868998504001046311211 Q T0591 185 SNP-NNPAGVV-YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG 262 (406) Q Consensus 185 ~~P-~NPTG~~-~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG 262 (406) .| .+..|.. .+++.+++|.++|++||+++|.||++..|.-.|.-.. .. .....+| +.++||.++ .|+-+| T Consensus 190 -Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~-~~-~~gv~PD----i~~~gK~lg-gg~p~~ 261 (397) T 2ord_A 190 -EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFA-YQ-KYGVVPD----VLTTAKGLG-GGVPIG 261 (397) T ss_dssp -CSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSH-HH-HHTCCCS----EEEECGGGG-TTSCCE T ss_pred -ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHH-HC-CCCCCCC----CEEECHHHC-CCCCEE T ss_conf -615678897709989999999999872968997132407865574522-04-7898944----133122435-997237 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEE Q ss_conf 43325899999998752036761245799999998565--2589999999999999999999727994553588730787 Q T0591 263 VAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLF 340 (406) Q Consensus 263 ~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w 340 (406) .+++..++. .+.......+++.++++..++.+.|+.. +...+...+.-+..++.+.+.+.+.+-+.-.... |..+- T Consensus 262 a~~~~~~~~-~~~~~~~~~T~~g~p~a~AAa~a~L~~i~~~~~~~~v~~~g~~l~~~l~~l~~~~~~v~~vrg~-G~~~~ 339 (397) T 2ord_A 262 AVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGM-GLMIG 339 (397) T ss_dssp EEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEE T ss_pred EEEEHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-CEEEE T ss_conf 888813453-1778781878860699999999999999867869999999999999999999868984778775-51999 Q ss_pred EECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHH Q ss_conf 766887889899999999868918961610267999858998--509979999999999999998 Q T0591 341 PRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 341 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~~~ 403 (406) +.+.+ .....+++.++++ +||.+.|. +.+.+|++ +..+++++++++++|.+++++ T Consensus 340 i~~~~-~~~~~~~~~~~~~-~Gll~~~~------g~~~i~~~Ppl~it~~eid~~i~~l~~alk~ 396 (397) T 2ord_A 340 IQFRE-EVSNREVATKCFE-NKLLVVPA------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397) T ss_dssp EEECT-TSCHHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT T ss_pred EEECC-CCCHHHHHHHHHH-CCCEEEEC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 99768-7766999999997-89899727------9998999798688999999999999999955 No 115 >3ffr_A Phosphoserine aminotransferase SERC; YP_677612.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Probab=99.77 E-value=7.9e-16 Score=124.95 Aligned_cols=326 Identities=10% Similarity=0.060 Sum_probs=192.0 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 341567867887888999999999980878--888788889889999999999864886788670788248727899999 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGV--QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 118 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~ 118 (406) +.|+-| +..-++.+.+++.+.+..... .+.++ -..++-+...+.+++..|.+- ...|++|.|+|+++..++ T Consensus 6 ~~f~pG---P~~~~~~V~~a~~~~~~~~~~~~~HRs~--~f~~i~~~~r~~l~~ll~~~~--~~~iif~~~gT~a~~~~~ 78 (362) T 3ffr_A 6 IYFTPG---PSELYPTVRQHMITALDEKIGVISHRSK--KFEEVYKTASDNLKTLLELPS--NYEVLFLASATEIWERII 78 (362) T ss_dssp EEECSS---SCCCCTTHHHHHHHHHHTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCCT--TEEEEEESCHHHHHHHHH T ss_pred EEECCC---CCCCCHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHHHHHHHHHHCCCC--CCEEEEECCHHHHHHHHH T ss_conf 410179---9288999999999987744898777788--999999999999999967999--978999587699999999 Q ss_pred HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH Q ss_conf 99972001010131055138999998299699986044666776667788999998502540342156664323344378 Q T0591 119 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 198 (406) Q Consensus 119 ~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~ 198 (406) ..+.++++.+++...+-......++.+|.++..+..+. +..+|+++++ ..++++++.++.-+|.||...+ T Consensus 79 ~~l~~~~~~~i~~g~~~~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~~--~~~~~~~v~~~h~~t~tG~~~p-- 148 (362) T 3ffr_A 79 QNCVEKKSFHCVNGSFSKRFYEFAGELGREAYKEEAAF------GKGFYPADIT--VPADAEIICLTHNETSSGVSMP-- 148 (362) T ss_dssp HHHCSSEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT------TCCCCGGGCC--CCTTCCEEEEESEETTTTEECC-- T ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCC------CCCCCHHHHH--CCCCCCEEEEECCCCCCCEEEC-- T ss_conf 72002550588468137899999975185004862676------7546876752--3778765888534587654633-- Q ss_pred HHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCC-CCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999863-78757841750235568887652233210267868998504001046-31121143325899999998 Q T0591 199 EIGQIAALAAR-YGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL-SGYRLGVAFGSRAIIARMEK 276 (406) Q Consensus 199 ~l~~i~~~a~~-~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~GlRiG~~~~~~~~i~~l~~ 276 (406) +++|.++|++ +|+++++|-+.+... .+ +.. .. -+ +++.|-.|.++. || +|+++..+++++.+.. T Consensus 149 -i~~I~~~~~k~~~~l~~vDa~qs~g~---~~---iD~-~~--iD--~~~~s~~K~l~~P~G--~g~l~~~~~~l~~~~~ 214 (362) T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLPY---PK---FDW-TK--ID--SVFFSVQKCFGLPAG--LGVWILNDRVIEKSKA 214 (362) T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTTS---SC---CCT-TS--CS--EEEEETTSTTCCCSC--CEEEEEEHHHHHHHHH T ss_pred -HHHHHHHHHCCCCCEEEECCCCCCCC---CC---CCC-HH--CC--EEEECCCCCCCCCCC--EEEEEECHHHHHHHHC T ss_conf -15441111025782475256544343---45---320-11--54--357236655668986--2478987999975431 Q ss_pred HHHH--------------------CCCCHHH-HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 7520--------------------3676124-57999999985652-589999999999999999999727994553588 Q T0591 277 LQAI--------------------VSLRAAG-YSQAVLRGWFDEAP-GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 334 (406) Q Consensus 277 ~~~~--------------------~~~~~~~-~~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 334 (406) .... .+.+++. ....++...++... .-++...++.+++.+.+.+.+.+.++..+...+ T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~~l~~al~~~~~~g~e~i~~~~~~~~~~l~~~l~~~~~~~~~~~~ 294 (362) T 3ffr_A 215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVED 294 (362) T ss_dssp HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSC T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCC T ss_conf 26898760144667899986531577757579999999999998876362258999999999999999968891137788 Q ss_pred CCE--EEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHH Q ss_conf 730--78776688788989999999986891896161026799985899850--99799999999999999 Q T0591 335 AGS--YLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLV 401 (406) Q Consensus 335 gg~--~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~ 401 (406) ... ..-+.++. +.+..++. .+++++||.+.+|.. ....+.+|++.. .+.|+++..++.|++.+ T Consensus 295 ~~~~s~~~i~~~~-~~~~~~~~-~~l~~~~i~i~~g~g--~~~~~~~Ris~~~~~t~edI~~lv~alke~l 361 (362) T 3ffr_A 295 AKLRSMTTIVANT-TMLPGEIN-KILEPFDMAVGAGYG--SKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362) T ss_dssp GGGBCSSEEEEEE-SSCHHHHH-HHHGGGTEEEEECSG--GGTTTEEEEECCTTSCHHHHHHHHHHHHHHT T ss_pred CCCCCEEEEECCC-CCCHHHHH-HHHHHCCCEEECCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 2017668998999-98989999-999968965214885--6689899887589999999999999999974 No 116 >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 Probab=99.77 E-value=1.8e-15 Score=122.55 Aligned_cols=341 Identities=15% Similarity=0.111 Sum_probs=195.8 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.|||..| ...+.+-.|.+.+++.+.+...... ...-.....+..++.+....| .+.++.+++++++... T Consensus 66 ~yiD~~~g~~~~~lGh~hp~v~~Ai~~q~~~~~~~---~~~~~~~~~~~~e~ll~~~~~-----~~~v~f~~sGseA~e~ 137 (433) T 1z7d_A 66 RYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC---SRAFFSVPLGICERYLTNLLG-----YDKVLMMNTGAEANET 137 (433) T ss_dssp EEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC---CTTSEEHHHHHHHHHHHHHHT-----CSEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHCCC-----CCEEEEEECCCCHHHH T ss_conf 99984418886714059899999999999855875---465540799999997645678-----6415774112421567 Q ss_pred HHHHHHHCCH----------HHHHHHCCCHHHHHHHHH-HCCEE---EEEEECCCCCCCCCCCCCHHHHHHHHCC-CCEE Q ss_conf 9999972001----------010131055138999998-29969---9986044666776667788999998502-5403 Q T0591 117 AVAATVARGD----------KVAIVQPDYFANRKLVEF-FEGEM---VPVQLDYVSADETRAGLDLTGLEEAFKA-GARV 181 (406) Q Consensus 117 ~~~~l~~pGd----------~Vl~~~P~y~~~~~~~~~-~g~~~---v~v~~~~~~~~~~~~~~d~~~l~~~~~~-~~k~ 181 (406) ++.....-+. .++...-+|+........ .+... ...|.... ...--..|.+++++.+++ ++.+ T Consensus 138 a~klar~~~~~~~~~~~~~~~i~~~~~~yhG~t~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~d~~~le~~l~~~~iAa 215 (433) T 1z7d_A 138 AYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQ--FSKVPYDDLEALEEELKDPNVCA 215 (433) T ss_dssp HHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------C--EEEECTTCHHHHHHHHTSTTEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--EECCCCCHHHHHHHHCCCCCEEE T ss_conf 9999988763234433333432467632688743110267885556688888873--01237775999998648998699 Q ss_pred EECCCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC- Q ss_conf 421566-643233-44378999999998637875784175023556888765223321026786899850400104631- Q T0591 182 FLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG- 258 (406) Q Consensus 182 i~l~~P-~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G- 258 (406) +++ -| ..-.|. ..+++.+++|.++|++||+++|.||++..|.-.|.-... .. ....|| |+ +++|.++ .| T Consensus 216 vi~-EPv~g~~G~~~~~~~~l~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~-e~-~gv~PD--iv--~~gK~l~-gG~ 287 (433) T 1z7d_A 216 FIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV-HH-YNVKPD--VI--LLGKALS-GGH 287 (433) T ss_dssp EEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG-GG-GTCCCS--EE--EECGGGG-TTS T ss_pred EEE-EEECCCCCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCH-HH-CCCCCC--EE--EECCCCC-CCC T ss_conf 999-7574888985099999999999998819689994576588852343325-44-399987--88--7310034-887 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 12114332589999999875203676124579999999856--5258999999999999999999972799455358873 Q T0591 259 YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAG 336 (406) Q Consensus 259 lRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg 336 (406) +-+|.+++.+++.+.+.......+++.+++...++.+.++. .+...+...+.-+..++.+.+.+.+.+.+......| T Consensus 288 ~p~~av~~~~~i~~~~~~~~~~~Tf~g~pl~~aAa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~~~~~~~~v~~vrg~G- 366 (433) T 1z7d_A 288 YPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKG- 366 (433) T ss_dssp SCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEET- T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC- T ss_conf 7642114519886157899867788989245577676655553112577766535899999999975699707986158- Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 0787766887889899999999868918961610267999858998--50997999999999999999856 Q T0591 337 SYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 337 ~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~~~~r 405 (406) +.+-+.+.+......+++..++ +.||++.|. +.+.||++ +..+++++++++++|.+.++++. T Consensus 367 lm~~i~f~~~~~~~~~~~~~l~-~~Gll~~~~------~~~~ir~~Ppl~it~~did~~~~~l~~alk~ld 430 (433) T 1z7d_A 367 LLCAIEFKNELVNVLDICLKLK-ENGLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 430 (433) T ss_dssp TEEEEEECTTTCCHHHHHHHHH-HTTEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC T ss_pred EEEEEEECCCCCCHHHHHHHHH-HCCEEEECC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 0899997488668999999999-699489327------999899979847899999999999999999997 No 117 >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Probab=99.76 E-value=2e-15 Score=122.18 Aligned_cols=309 Identities=14% Similarity=0.154 Sum_probs=195.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHHC Q ss_conf 8999999999980878888788889889999999999864886788670788248727899999999-720010101310 Q T0591 55 PGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQP 133 (406) Q Consensus 55 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~P 133 (406) ++-++++.+.+.++... .++. ..+|.+.+|++ +|. + ..+.++.+|.||.+++.++ +.+||+|+++.. T Consensus 20 ~~e~~~v~~~l~sg~~~-~G~~--v~~fE~~~a~~----~g~----~-~av~~~Sgt~Al~~al~al~~~~gdeVi~p~~ 87 (393) T 1mdo_A 20 AEELAAVKTVLDSGWIT-TGPK--NQELEAAFCRL----TGN----Q-YAVAVSSATAGMHIALMALGIGEGDEVITPSM 87 (393) T ss_dssp HHHHHHHHHHHHHTCCS-SSHH--HHHHHHHHHHH----HCC----S-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESS T ss_pred HHHHHHHHHHHHCCCCC-CCHH--HHHHHHHHHHH----HCC----C-EEEEECCHHHHHHHHHHHCCCCCCCEEECCCC T ss_conf 99999999999759876-8988--99999999999----782----9-59996788999999999819999898957996 Q ss_pred CCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE Q ss_conf 55138999998299699986044666776667788999998502540342156664323344378999999998637875 Q T0591 134 DYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT 213 (406) Q Consensus 134 ~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ 213 (406) +|.+....+...|++++.+.++ .+.+.+|++.+++.++++||+|+++ +..|.... +++|.++|+++|++ T Consensus 88 t~~~~~~ai~~~g~~pv~~Di~-----~~~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~d---~~~i~~i~~~~~i~ 156 (393) T 1mdo_A 88 TWVSTLNMIVLLGANPVMVDVD-----RDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERYGIP 156 (393) T ss_dssp SCHHHHHHHHHTTCEEEEECBC-----TTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHHTCC T ss_pred EEHHHHHHHHHCCCEEEEECCC-----CCCCCCCHHHHHHHHCCCCEEEEEE---CCCCCCCC---HHHHHHHHHHCCCE T ss_conf 4033103653359888994143-----3234688999997517785089702---78587214---88999999974976 Q ss_pred EEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHCC------- Q ss_conf 78417502355-68887652233210267868998504--0010463112114332-5899999998752036------- Q T0591 214 VIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQAIVS------- 282 (406) Q Consensus 214 ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~~------- 282 (406) ||+|.+.+... |.+... + ..+ ..++|| +|.++ +| .-|.++. ++++.+.++.++.... T Consensus 157 lIeD~a~a~g~~~~~~~~------g--~~g--~~~fSf~~~K~l~-~g-eGG~i~t~~~~l~~~~~~l~~~g~~~~~~~~ 224 (393) T 1mdo_A 157 VIEDAAHATGTSYKGRHI------G--ARG--TAIFSFHAIKNIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDR 224 (393) T ss_dssp BCEECTTCTTCEETTEET------T--SSS--EEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC---- T ss_pred EEECCCCCCCCCCCCCCC------C--CCC--EEEEECCCCCCCC-CC-CCEEEEEEHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 997583202670089214------7--887--1898698866787-88-9618995129999999987755977543533 Q ss_pred -----------------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC----CEEEEE Q ss_conf -----------------76124579999999856525899999999999999999997279945535887----307877 Q T0591 283 -----------------LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQA----GSYLFP 341 (406) Q Consensus 283 -----------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g----g~~~w~ 341 (406) +..+.+.......-| +.+.+..++.++..+.+.+.|.+++++....+.. .++.++ T Consensus 225 ~~~~~~~~~~~~~~G~N~rmsel~Aaig~~qL----~~l~~~i~~R~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~ 300 (393) T 1mdo_A 225 QSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFI 300 (393) T ss_dssp -------CCEESSCCCBCCCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEE T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE T ss_conf 23333321123568756463257887752001----00489999999999999998605898656663212432104542 Q ss_pred E-CC--CCCCCHHHHHHHHHHHCCEEEEECC-----------CCCCC--------CCCEEEEEEC--CCHHHHHHHHHHH Q ss_conf 6-68--8788989999999986891896161-----------02679--------9985899850--9979999999999 Q T0591 342 R-LP--KLAVAPAEFVKILRLQAGVVVTPGT-----------EFSPH--------TADSVRLNFS--QDHEAAVAAARRI 397 (406) Q Consensus 342 ~-~~--~~~~~~~~~~~~Ll~~~gV~v~pG~-----------~Fg~~--------~~~~iRis~~--~~~e~l~~al~rl 397 (406) - +. ....+..++.+.| .+.||-+.+.. .|... ....+.|.+- .++++++..++.| T Consensus 301 ~~~~~~~~~~~Rd~l~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~p~ae~~~~~~l~LP~~~~lt~~di~~Ii~~i 379 (393) T 1mdo_A 301 IRVDEARCGITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL 379 (393) T ss_dssp EECCHHHHSSCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHH T ss_pred EECCHHHCCCCHHHHHHHH-HHCCCCEEEECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHH T ss_conf 2043222413599999999-987998221585123189989638778998999998497986489999999999999999 Q ss_pred HHHHHH Q ss_conf 999998 Q T0591 398 VTLVER 403 (406) Q Consensus 398 ~~~~~~ 403 (406) ++++++ T Consensus 380 ~~i~~~ 385 (393) T 1mdo_A 380 HQIAGQ 385 (393) T ss_dssp HHHHC- T ss_pred HHHHHC T ss_conf 999966 No 118 >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus VF5} Probab=99.76 E-value=2.2e-15 Score=121.95 Aligned_cols=334 Identities=11% Similarity=0.087 Sum_probs=204.6 Q ss_pred CC-CCEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 89-8334156--78678878889999999999808788887888898899999999998648867886707882487278 Q T0591 37 EG-RPVDFSH--GDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 37 ~~-~~i~ls~--G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) ++ +.||+.. |...+.+-.|.+.+++.+++..... .+..... +....+++.+....+ ..+.+..+++++++ T Consensus 26 dG~~yiD~~~g~g~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~-~~~~~l~~~l~~~~~----~~~~~~f~~sGseA 98 (375) T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH--VSNLYEN-PWQEELAHKLVKHFW----TEGKVFFANSGTES 98 (375) T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSC--CCTTBCC-HHHHHHHHHHHHTSS----SCEEEEEESSHHHH T ss_pred CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCCCC-HHHHHHHHHHHHCCC----CCCEEEECCCCCCH T ss_conf 9899998652888620178959999999999865377--6654257-699999874221265----32201223786326 Q ss_pred HHHHHHHHH------HCC-HHHHHHHCCCHHHHHHHH-HHCCEEEEEEECCC-CCCCCCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 999999997------200-101013105513899999-82996999860446-667766677889999985025403421 Q T0591 114 LFLAVAATV------ARG-DKVAIVQPDYFANRKLVE-FFEGEMVPVQLDYV-SADETRAGLDLTGLEEAFKAGARVFLF 184 (406) Q Consensus 114 l~~~~~~l~------~pG-d~Vl~~~P~y~~~~~~~~-~~g~~~v~v~~~~~-~~~~~~~~~d~~~l~~~~~~~~k~i~l 184 (406) ...++.... ..| ..|+..+.+|++...... ..|-....-+.... .........+++++.+.+.+++.++++ T Consensus 99 ~e~Aikla~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iAavi~ 178 (375) T 2eh6_A 99 VEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDEETAGIII 178 (375) T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCCTTEEEEEE T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEE T ss_conf 99999999999985089967899988986997455523568813345778999983322344799999964898369999 Q ss_pred CCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCH Q ss_conf 566-643233-443789999999986378757841750235568887652233210267868998504001046311211 Q T0591 185 SNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG 262 (406) Q Consensus 185 ~~P-~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG 262 (406) .| .+-.|. ..+++.+++|.++|++||+++|.||++..|.-.|.-+.. .. ....|| |+ .+||.++ .|+-+| T Consensus 179 -Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~gRtG~~~a~-~~-~gv~PD--i~--~~gK~l~-~G~p~~ 250 (375) T 2eh6_A 179 -EVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY-QH-FNLKPD--VI--ALAKGLG-GGVPIG 250 (375) T ss_dssp -CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GG-GTCCCS--EE--EECGGGG-TTSCCE T ss_pred -ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHH-HH-CCCCCC--EE--EECCCCC-CCCEEE T ss_conf -6446778974799899999999999819889966564087655477404-44-299843--01--1042345-674136 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEE Q ss_conf 43325899999998752036761245799999998565258999999999999999999972799455358873078776 Q T0591 263 VAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPR 342 (406) Q Consensus 263 ~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~ 342 (406) .+++.+++.+.+.......+++.++++..++.+.++. +++...+.++..+.+.+.|+++.--.+. .. |++.-+. T Consensus 251 a~~~~~~~~~~~~~~~~~~T~~g~p~a~aaa~a~l~~----~e~~~~~~~~~~~~~~~~L~~l~~~~vr-g~-Gl~~~ie 324 (375) T 2eh6_A 251 AILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE----VEKLLPHVREVGNYFKEKLKELGKGKVK-GR-GLMLGLE 324 (375) T ss_dssp EEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTSSEEE-EE-TTEEEEE T ss_pred EEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHCCCCEE-EC-CEEEEEE T ss_conf 6886288762426898564728892788999999999----9661367889999999998873579740-02-3699999 Q ss_pred CCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHH Q ss_conf 6887889899999999868918961610267999858998--5099799999999999999 Q T0591 343 LPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLV 401 (406) Q Consensus 343 ~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~ 401 (406) +.. +..+++.++++ .|+++.+. +.+.+|++ +..+++++++++++|.+.+ T Consensus 325 ~~~---~~~~~~~~~~~-~Gv~~~~~------~~~~ir~~Ppl~it~~~id~~~~~l~~~L 375 (375) T 2eh6_A 325 LER---ECKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375) T ss_dssp CSS---CCHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHC T ss_pred ECC---CHHHHHHHHHH-CCCEEECC------CCCEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 656---07999999997-89289028------99989995896889999999999999869 No 119 >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Probab=99.76 E-value=6.3e-15 Score=118.82 Aligned_cols=353 Identities=15% Similarity=0.085 Sum_probs=200.1 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.||+..| ...+-+-.|.+.+++.+.+...... ......-+.+..+|+.+.+..+.+ .+.++.++++++|... T Consensus 30 ~ylD~~~g~g~~~lGh~~p~i~~ai~~q~~~~~~~--~~~~~~~~~~~~lae~L~~~~~~~---~~~v~~~~sGseA~e~ 104 (430) T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAARLPFV--HGSQFSSDVLEEYAGRLARFVGLP---TFRFWAVSGGSEATES 104 (430) T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCC--CTTTCEEHHHHHHHHHHHHHTTCT---TCEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCHHHHHHH T ss_conf 99988633898870899699999999998656875--667546099999999999866998---1459942865899999 Q ss_pred HHHHHH-------HCC-HHHHHHHCCCHHHHHHHH-HHCCEE-----EEEEEC------CCCCCCCCCCCCHHHHHHHHC Q ss_conf 999997-------200-101013105513899999-829969-----998604------466677666778899999850 Q T0591 117 AVAATV-------ARG-DKVAIVQPDYFANRKLVE-FFEGEM-----VPVQLD------YVSADETRAGLDLTGLEEAFK 176 (406) Q Consensus 117 ~~~~l~-------~pG-d~Vl~~~P~y~~~~~~~~-~~g~~~-----v~v~~~------~~~~~~~~~~~d~~~l~~~~~ 176 (406) +++.-- .+| ..|+....+|++...... ..+-.. .+++.. ...........+.+.+++.+. T Consensus 105 AiklAr~~~~~~~~tgr~~Ii~~~~~yHG~t~~a~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (430) T 3i4j_A 105 AVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLE 184 (430) T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999997886389998889998688687988864336887555555676667766777764101231357999999999 Q ss_pred ----CCCEEEECCCCCC-CCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEC Q ss_conf ----2540342156664-3233-443789999999986378757841750235568887652233210267868998504 Q T0591 177 ----AGARVFLFSNPNN-PAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGP 250 (406) Q Consensus 177 ----~~~k~i~l~~P~N-PTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~ 250 (406) +++.++++.-+.. -.|. ..+++.++++.++|++||+++|.||++..|...+..... .......|| +-++ T Consensus 185 ~~~~~~iaavi~Ep~~~~~~G~~~p~~~~l~~lr~lc~~~gillI~DEV~tGfgr~g~~~~~-~~~~gv~PD----iv~~ 259 (430) T 3i4j_A 185 REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLAL-SRWSGVTPD----IAVL 259 (430) T ss_dssp HHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGTTTCCCS----EEEE T ss_pred HHCCCCEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHH-HHHCCCCCC----CEEE T ss_conf 72998747999635455789866898799999999985259648852664367757763278-886398987----1566 Q ss_pred CHHCCCCC-CCCHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00104631-12114332589999999875----2036761245799999998565--25899999999999999999997 Q T0591 251 SKTESLSG-YRLGVAFGSRAIIARMEKLQ----AIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLR 323 (406) Q Consensus 251 SK~~~~~G-lRiG~~~~~~~~i~~l~~~~----~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~ 323 (406) +|.++ .| .-++.+++.+++.+.+..-. ...+.+.+.++..++.+.|+.. +...++..+.-++.++.+.+.+. T Consensus 260 gK~l~-~G~~p~~~v~~~~~i~~~~~~~~~~~~h~~T~~g~pl~~aaa~a~L~~i~~~~~~~~v~~~g~~l~~~l~~l~~ 338 (430) T 3i4j_A 260 GKGLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQA 338 (430) T ss_dssp CGGGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 43003-67665112320699998644787666406788998699999999999852445999999997778999999997 Q ss_pred HCCCCEEECCCCCEEEEEECCCC--------CCCHHHHHHHHHHHCCEEEEECCCCCCC-CCCEEEEE--ECCCHHHHHH Q ss_conf 27994553588730787766887--------8898999999998689189616102679-99858998--5099799999 Q T0591 324 GCEGVFARTPQAGSYLFPRLPKL--------AVAPAEFVKILRLQAGVVVTPGTEFSPH-TADSVRLN--FSQDHEAAVA 392 (406) Q Consensus 324 ~~~g~~~~~p~gg~~~w~~~~~~--------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~~~~iRis--~~~~~e~l~~ 392 (406) +.+.+.-.... |+++-+.+.+. ..-...+...++ ++||++.|+...... ..+++|++ +..+++++++ T Consensus 339 ~~~~i~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~~~~~~~~~~~~ir~~Ppl~it~~eid~ 416 (430) T 3i4j_A 339 RFPQMMQVRGT-GLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDG 416 (430) T ss_dssp HCTTEEEEEEE-TTEEEEEEC------------CHHHHHHHHH-HTTEECC-----------CEEEECCCTTCCHHHHHH T ss_pred HCCCEEEEECC-CEEEEEEEECCCCCCCCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH T ss_conf 68985899536-7599999732555755458899999999999-789789425665667878889995898889999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999985 Q T0591 393 AARRIVTLVERY 404 (406) Q Consensus 393 al~rl~~~~~~~ 404 (406) ++++|.+.+++. T Consensus 417 ~~~~l~~al~ev 428 (430) T 3i4j_A 417 LLALLAGALEDV 428 (430) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999986 No 120 >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomics; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Probab=99.76 E-value=1e-14 Score=117.42 Aligned_cols=286 Identities=18% Similarity=0.116 Sum_probs=171.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHH----HHC Q ss_conf 8887888898899999999998648867886707882487278999999997200101013105513899999----829 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE----FFE 146 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~----~~g 146 (406) +-|+-. |.|. ++++.+.+....|. + ..++++.+..|+..++.+++.+||+|++..+.|......+. ..| T Consensus 50 ~~Y~R~-~nPt-~~~le~~la~Le~~----~-~a~~fsSGMaAi~~~~l~l~~~Gd~ii~~~~~Yg~t~~l~~~~~~~~g 122 (421) T 2ctz_A 50 NIYSRI-MNPT-VDVLEKRLAALEGG----K-AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122 (421) T ss_dssp GSCBTT-BCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT T ss_pred CEECCC-CCHH-HHHHHHHHHHHHCC----C-EEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCC T ss_conf 632289-8878-99999999998399----7-388761769999999875054666213326667642689999874223 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC Q ss_conf 96999860446667766677889999985025403421566643233443789999999986378757841750235568 Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYA 226 (406) Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~ 226 (406) .+...+.. .-+.+..++.++++||+||+-+|.|||..+.. +++|+++|+++|+++++|+.++.--+ T Consensus 123 i~~~~~d~----------~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~- 188 (421) T 2ctz_A 123 IEVRFTSR----------EERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGY- 188 (421) T ss_dssp CEEEECCT----------TCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGT- T ss_pred CCCCCCCC----------CCCCCCCCCCCCCCCEEEEEECCCCCEEEECC---HHHHHHHHHHCCCCEEECCCCCCCCE- T ss_conf 01100355----------55730000224776248997147864366444---89999998644973674253233620- Q ss_pred CCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCC-CCHHHHHH-------------------------------HHHHHHH Q ss_conf 887652233210267868998504001046311-21143325-------------------------------8999999 Q T0591 227 GASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-RLGVAFGS-------------------------------RAIIARM 274 (406) Q Consensus 227 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RiG~~~~~-------------------------------~~~i~~l 274 (406) -..+ ...+ .| |+++|.||.++--|= =.|.++++ ..++.+. T Consensus 189 --~~~P-l~~G-aD----iVvhS~TKyl~GHsDvl~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (421) T 2ctz_A 189 --LLRP-LAWG-AA----LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKA 260 (421) T ss_dssp --SCCG-GGGT-CS----EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHH T ss_pred --ECCH-HHCC-CC----EEEEEHHHHCCCCCCEEEEEEECCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHCCHHHHHHH T ss_conf --1562-3418-85----58974033336888726788752773056533450210132000101499885227999999 Q ss_pred H-HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EECCC------------------ Q ss_conf 9-875203676124579999999856525899999999999999999997279945-53588------------------ Q T0591 275 E-KLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVF-ARTPQ------------------ 334 (406) Q Consensus 275 ~-~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~------------------ 334 (406) + ..........++.....+..-| +-+.-+.++..++...+.+.|.+.+.+. +..|. T Consensus 261 ~~~~~~~~G~~~sp~~a~lllRGL----~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~a~~~~~g~~ 336 (421) T 2ctz_A 261 RVDGLRDQGQALGPFEAWVVLLGM----ETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKP 336 (421) T ss_dssp HHTHHHHHCCCCCHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCC T ss_conf 999998636879979989874589----8347779999998999987551389735996587578813999986347996 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCC-------------------------CCCCEEEEEECC-CHH Q ss_conf 730787766887889899999999868918961610267-------------------------999858998509-979 Q T0591 335 AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP-------------------------HTADSVRLNFSQ-DHE 388 (406) Q Consensus 335 gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-------------------------~~~~~iRis~~~-~~e 388 (406) |++ +.+.+. .+.+-+.++++.-.+. ..|..+|. -.++.||+|++. +.| T Consensus 337 G~~-~sf~l~----~~~~~a~~f~d~L~l~-~~a~SlGg~eSLi~~pa~~th~~~~~e~~~~~GI~~~liRlSvGlEd~e 410 (421) T 2ctz_A 337 GAV-LTFGLK----GGYEAAKRFISRLKLI-SHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVE 410 (421) T ss_dssp CSE-EEEEET----THHHHHHHHHHTCSSS-EECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHH T ss_pred CEE-EEEEEC----CCHHHHHHHHHCCCCC-EECCCCCCCCCEEECCCCCCCHHCCHHHHHHCCCCCCEEEEEECCCCHH T ss_conf 328-999943----9999999999738847-6645665345330283102310089999986698939799975239999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q T0591 389 AAVAAAR 395 (406) Q Consensus 389 ~l~~al~ 395 (406) +|.+-++ T Consensus 411 DLi~DL~ 417 (421) T 2ctz_A 411 DLKAELK 417 (421) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 121 >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Probab=99.76 E-value=4.5e-15 Score=119.83 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=196.7 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.|||..| ...+.+-.|.+.+++.+.+...... .+.....+....+++.+...... +..+.++.+++++++... T Consensus 42 ~ylD~~~g~g~~~lGh~~p~i~~av~~q~~~~~~~--~~~~~~~~~~~~la~~l~~~~p~--~~~~~v~~~~sGseA~e~ 117 (426) T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHT--CFQVLAYEPYLELCEIMNQKVPG--DFAKKTLLVTTGSEAVEN 117 (426) T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCC--CTTTEECHHHHHHHHHHHHHSSC--SSCEEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEECCCCCHHHHH T ss_conf 99985728886400489699999999998646776--66533560799999998755431--145334421465203455 Q ss_pred HHHHH---HHCCHHHHHHHCCCHHHHHHH-HHHCCE-------------EEEEEECCCCCCCCCCCCCHHHHHHH-H--- Q ss_conf 99999---720010101310551389999-982996-------------99986044666776667788999998-5--- Q T0591 117 AVAAT---VARGDKVAIVQPDYFANRKLV-EFFEGE-------------MVPVQLDYVSADETRAGLDLTGLEEA-F--- 175 (406) Q Consensus 117 ~~~~l---~~pGd~Vl~~~P~y~~~~~~~-~~~g~~-------------~v~v~~~~~~~~~~~~~~d~~~l~~~-~--- 175 (406) +++.. .+ ...++...-+|++..... ...+.. ....+............. ....++. . T Consensus 118 Aik~ar~~t~-r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 195 (426) T 1sff_A 118 AVKIARAATK-RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDA-IASIHRIFKNDA 195 (426) T ss_dssp HHHHHHHHHT-CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHH-HHHHHHHHHHTC T ss_pred HHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHC T ss_conf 4344443423-34168436887788542100014567765788988887535677621235321001-467777776404 Q ss_pred C-CCCEEEECCCC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECC Q ss_conf 0-25403421566--643233-4437899999999863787578417502355688876522332102678689985040 Q T0591 176 K-AGARVFLFSNP--NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 251 (406) Q Consensus 176 ~-~~~k~i~l~~P--~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~S 251 (406) . .++.++++ -| ++ .|. ..+++.+++|.++|++||+++|.||++..+.-.|.-... .. ....|| +-++| T Consensus 196 ~~~~iaaviv-Epi~~~-~G~~~~~~~~l~~lr~lc~~~gillI~DEV~tG~gRtg~~~~~-~~-~~v~PD----i~~~g 267 (426) T 1sff_A 196 APEDIAAIVI-EPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM-EQ-MGVAPD----LTTFA 267 (426) T ss_dssp CGGGEEEEEE-CSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GG-TTSCCS----EEEEC T ss_pred CCCCEEEEEE-CCCCCC-CCCCCCCHHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCHH-HH-CCCCCC----CEEEC T ss_conf 6771789996-675378-8960587899999999998719389854413356666443146-55-697831----30001 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 0104631121143325899999998752036761245799999998565--25899999999999999999997279945 Q T0591 252 KTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVF 329 (406) Q Consensus 252 K~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~ 329 (406) |.++ .|+-+|.+++.+++.+.........+++.++++..++.+.|+.- +....+....-.+.++.+.+.+.+.+-+. T Consensus 268 K~lg-gG~P~~av~~~~~i~~~~~~~~~~~T~~g~p~~~aAa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~ 346 (426) T 1sff_A 268 KSIA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIG 346 (426) T ss_dssp GGGG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEE T ss_pred HHCC-CCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCCCEE T ss_conf 1115-886528999825643033799998798988789999999999998721101221001234566678898689637 Q ss_pred EECCCCCEEEEEECCCC---C-CC---HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHH Q ss_conf 53588730787766887---8-89---899999999868918961610267999858998--509979999999999999 Q T0591 330 ARTPQAGSYLFPRLPKL---A-VA---PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTL 400 (406) Q Consensus 330 ~~~p~gg~~~w~~~~~~---~-~~---~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~ 400 (406) -.... |..+-+.+.+. . .+ ..+++.+++ +.||.+.++. . ..+.+|++ +..++++++++++++.+. T Consensus 347 ~VrG~-Gl~~~ief~~~~~~~~~d~~~~~~~~~~l~-~~Gll~~~~g---~-~~n~ir~~PpL~it~~eid~~l~~l~~a 420 (426) T 1sff_A 347 DVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCG---P-YYNVLRILVPLTIEDAQIRQGLEIISQC 420 (426) T ss_dssp EEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEES---T-TSCEEEECCCTTCCHHHHHHHHHHHHHH T ss_pred EEEEE-CEEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCEEECCC---C-CCCEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 89744-549999994266667756999999999999-7898895247---8-8888999799888999999999999999 Q ss_pred HHHHC Q ss_conf 99856 Q T0591 401 VERYR 405 (406) Q Consensus 401 ~~~~r 405 (406) ++++| T Consensus 421 l~eik 425 (426) T 1sff_A 421 FDEAK 425 (426) T ss_dssp HHHHC T ss_pred HHHHC T ss_conf 99962 No 122 >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Probab=99.76 E-value=1.5e-14 Score=116.20 Aligned_cols=282 Identities=21% Similarity=0.183 Sum_probs=167.1 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHH--- Q ss_conf 78888788889889999999999864886788670788248727899999999720010101310551389999982--- Q T0591 69 GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF--- 145 (406) Q Consensus 69 ~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~--- 145 (406) .-+-|+-. |.|. ++++.+.+....|. + ..++++.+..|+..++.+++.+||+|+++.+.|......+... T Consensus 46 ~~~~Y~R~-~nPt-~~~lE~~la~leg~----~-~a~~~~SGmaAi~~~~~~~~~~gd~vv~~~~~y~~t~~~~~~~~~~ 118 (412) T 2cb1_A 46 EGYVYARQ-KDPT-AKALEERLKALEGA----L-EAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412) T ss_dssp CSCSBTTT-CCHH-HHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT T ss_pred CCCEECCC-CCHH-HHHHHHHHHHHHCC----C-EEEEECCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCC T ss_conf 89534089-8878-99999999998599----6-2899748899999987530345531211577523022331004443 Q ss_pred -CCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf -9969998604466677666778899999850254034215666432334437899999999863787578417502355 Q T0591 146 -EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 146 -g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) |.+...+ -.|.+.++++++++||+|++.+|.||++.+.+ +++|+++|+++++++++|+.+...- T Consensus 119 ~~~~~~~~------------d~d~e~~~~ai~~~tk~i~~EspsNP~l~v~D---i~~i~~~a~~~g~~~vvDnT~~atp 183 (412) T 2cb1_A 119 MGVTVRYV------------DPEPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGAAG 183 (412) T ss_dssp TTCEEEEE------------CSSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGTTT T ss_pred CCCCCCCC------------CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCH---HHHHHHHHHHHCCCEEEECCEECCC T ss_conf 34323114------------89999999875448639999878864444441---8888777776055514523242033 Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHH-H--------------------------HHHHHHH Q ss_conf 6888765223321026786899850400104631-1211433258-9--------------------------9999998 Q T0591 225 YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSR-A--------------------------IIARMEK 276 (406) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~-~--------------------------~i~~l~~ 276 (406) + -..++ ..+ .| |+++|+||.++--| .=.|.+++++ + ...+++. T Consensus 184 ~---~~~Pl-~~G-aD----iVvhS~TKyi~GhsDv~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412) T 2cb1_A 184 A---LCRPL-AWG-AH----VVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRT 254 (412) T ss_dssp T---SCCGG-GGT-CS----EEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHH T ss_pred C---CCCCC-CCC-CC----EEEECCEEECCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 3---36653-468-87----899623551256776224799807178776655530123234203776676778999998 Q ss_pred HHH-HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-ECC-----------------CCCE Q ss_conf 752-036761245799999998565258999999999999999999972799455-358-----------------8730 Q T0591 277 LQA-IVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA-RTP-----------------QAGS 337 (406) Q Consensus 277 ~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p-----------------~gg~ 337 (406) ... ......+... +..++.. -+-+.-+.++..++...+.+.|.+.+.+.. ..| .||+ T Consensus 255 ~~~~~~G~~~~p~~---a~l~lrg-l~TL~lRm~~~~~nA~~la~~L~~hp~V~~V~yPgl~~~~~~~~~~~~~~g~Gg~ 330 (412) T 2cb1_A 255 LGLSLCGMALSPFN---AYLLFQG-LETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPI 330 (412) T ss_dssp HHTTTTCCCCCHHH---HHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSE T ss_pred HHHHCCCCCCCHHH---HHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE T ss_conf 76501555788788---9999745-0765123211014466677642469856542123333322322123333566734 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCC-------------------------CCCCEEEEEECC-CHHHHH Q ss_conf 787766887889899999999868918961610267-------------------------999858998509-979999 Q T0591 338 YLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP-------------------------HTADSVRLNFSQ-DHEAAV 391 (406) Q Consensus 338 ~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-------------------------~~~~~iRis~~~-~~e~l~ 391 (406) +.+.+. +.+-+.+.++.-.+.- +..+|. -.++.||||++. +.|+|. T Consensus 331 -~sf~l~-----~~e~a~~f~~~l~l~~--~~SlGg~eSLi~~P~~~~h~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi 402 (412) T 2cb1_A 331 -LTLDLG-----DLERASRFLGAIRLLK--AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLL 402 (412) T ss_dssp -EEEECS-----SHHHHHHHHHHCSSEE--CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHH T ss_pred -EEEEEC-----CHHHHHHHHHHCCEEE--EEEECCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHH T ss_conf -689968-----9999999996371888--76675766235577310331289999986697959699997209999999 Q ss_pred HH Q ss_conf 99 Q T0591 392 AA 393 (406) Q Consensus 392 ~a 393 (406) +- T Consensus 403 ~D 404 (412) T 2cb1_A 403 AL 404 (412) T ss_dssp HH T ss_pred HH T ss_conf 99 No 123 >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Probab=99.75 E-value=2.8e-15 Score=121.24 Aligned_cols=321 Identities=13% Similarity=0.111 Sum_probs=194.5 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH Q ss_conf 15678678878889999999999808788887888898899999999998648867886707882487278999999997 Q T0591 43 FSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV 122 (406) Q Consensus 43 ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~ 122 (406) +-.+.|.+. +..+.++++.+.+.++-..+.+|. ..+|-+.+++++ |.. .++.++.+|.||.+++.++ T Consensus 21 ~~~~~p~~~-~~~~~~~~~~~~l~s~~~s~~G~~--v~~fE~~~a~~~----g~k-----~av~~~SGT~AL~lal~al- 87 (424) T 2po3_A 21 LLVGRPNRI-DRARLYERLDRALDSQWLSNGGPL--VREFEERVAGLA----GVR-----HAVATCNATAGLQLLAHAA- 87 (424) T ss_dssp EETTCCCCC-CHHHHHHHHHHHHHHTCCSSSCHH--HHHHHHHHHHHH----TSS-----EEEEESCHHHHHHHHHHHH- T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHH----CCC-----EEEEECCHHHHHHHHHHHC- T ss_conf 676799999-789999999999966986789978--999999999997----849-----2999677799999999977- Q ss_pred HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHH Q ss_conf 20010101310551389999982996999860446667766677889999985025403421566643233443789999 Q T0591 123 ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQ 202 (406) Q Consensus 123 ~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~ 202 (406) +.||+|+++.-+|......+...|++++.+.++ .+.+.+|++.+++.++++|+++++++. -|.... +++ T Consensus 88 ~~~deVivps~t~~at~~ai~~~G~~pvfvDid-----~~t~~~d~~~i~~~it~~tkaIi~vh~---~G~~~d---~~~ 156 (424) T 2po3_A 88 GLTGEVIMPSMTFAATPHALRWIGLTPVFADID-----PDTGNLDPDQVAAAVTPRTSAVVGVHL---WGRPCA---ADQ 156 (424) T ss_dssp TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-----TTTSSBCHHHHGGGCCTTEEEEEEECG---GGCCCC---HHH T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCEEEEEEEE-----CCCCCCCHHHHHHHHCCCCEEEEEECC---CCCCCC---HHH T ss_conf 997989988974182399999779989999752-----342358899998752357539998457---787653---045 Q ss_pred HHHHHHHCCCEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHH Q ss_conf 9999863787578417502355-68887652233210267868998504--0010463112114332-589999999875 Q T0591 203 IAALAARYGATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQ 278 (406) Q Consensus 203 i~~~a~~~~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~ 278 (406) |.++|+++|+.||+|.+.+... |+|....+ ..+ +.++|| +|.++. | --|.++. ++++.+.++.++ T Consensus 157 i~~i~k~~~i~lIEDaA~a~Ga~~~gk~~Gs-------~Gd--~~~fSF~~~K~itt-G-eGG~i~t~d~~l~~~~r~~r 225 (424) T 2po3_A 157 LRKVADEHGLRLYFDAAHALGCAVDGRPAGS-------LGD--AEVFSFHATKAVNA-F-EGGAVVTDDADLAARIRALH 225 (424) T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETTEETTS-------SSS--EEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEECHHHHCCCCCCEEECC-------CCC--EEEECCHHHCCCCC-C-CCCEEECCCHHHHHHHHHHH T ss_conf 5546775297699603143166329988434-------644--22155411033651-7-98924057999999999987 Q ss_pred HHC------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-C----EEEEE Q ss_conf 203------------676124579999999856525899999999999999999997279945535887-3----07877 Q T0591 279 AIV------------SLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQA-G----SYLFP 341 (406) Q Consensus 279 ~~~------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g-g----~~~w~ 341 (406) ... .+..+.+.......-| +.+.+..++.++..+.+.+.|.+++++.+..... + .|..+ T Consensus 226 ~~G~~~~~~~~~~g~n~rmsel~Aaigl~qL----~~l~~~~~~R~~~a~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~i 301 (424) T 2po3_A 226 NFGFDLPGGSPAGGTNAKMSEAAAAMGLTSL----DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIV 301 (424) T ss_dssp BTTTTCTTCCTTCCCBCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEE T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 2686756554456742200699999999987----364899999999999999987338984366776567642368999 Q ss_pred ECCC--CCCCHHHHHHHHHHHCCEEEEECC--------CCC--CCC---------CCEEEEEEC--CCHHHHHHHHHHHH Q ss_conf 6688--788989999999986891896161--------026--799---------985899850--99799999999999 Q T0591 342 RLPK--LAVAPAEFVKILRLQAGVVVTPGT--------EFS--PHT---------ADSVRLNFS--QDHEAAVAAARRIV 398 (406) Q Consensus 342 ~~~~--~~~~~~~~~~~Ll~~~gV~v~pG~--------~Fg--~~~---------~~~iRis~~--~~~e~l~~al~rl~ 398 (406) .+.. ...+..++.+.| .++||-+.+.. .|. ..+ ...+-|.+- .++++++..++.|+ T Consensus 302 ~~~~~~~~~~Rd~l~~~L-~~~GI~~~~~y~p~l~~~~~y~~~~~~~~P~ae~l~~~~l~LP~~~~Lt~~di~~Ii~~IK 380 (424) T 2po3_A 302 EIDEATTGIHRDLVMEVL-KAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLR 380 (424) T ss_dssp EECHHHHSSCHHHHHHHH-HHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHH T ss_pred EECCCCCCCCHHHHHHHH-HHCCCCEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH T ss_conf 961212524699999999-9879988502697300097761899899989999985979897899989999999999999 Q ss_pred HHHHH Q ss_conf 99998 Q T0591 399 TLVER 403 (406) Q Consensus 399 ~~~~~ 403 (406) ....+ T Consensus 381 ~~~~~ 385 (424) T 2po3_A 381 LCATR 385 (424) T ss_dssp HHHHH T ss_pred HHHHC T ss_conf 99864 No 124 >3bv0_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; biotin biosynthesis, pyridoxal phosphate, S-adenosyl-L-methionine; HET: PLP; 2.21A {Mycobacterium tuberculosis} Probab=99.75 E-value=3.1e-15 Score=120.94 Aligned_cols=335 Identities=13% Similarity=0.109 Sum_probs=198.4 Q ss_pred CEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 3341567--86788788899999999998087888878888-98899999999998648867886707882487278999 Q T0591 40 PVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRG-DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 40 ~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) .||+..| ...+-+-.|.+.+++.+.+.... |....+ ..+....+|+++....... -+.++++++++++... T Consensus 57 ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---~~~~~~~~~~~~~~la~~L~~~~p~~---~~~v~f~~sGseA~e~ 130 (437) T 3bv0_A 57 VLDAMSSWWTAIHGHGHPALDQALTTQLRVMN---HVMFGGLTHEPAARLAKLLVDITPAG---LDTVFFSDSGSVSVEV 130 (437) T ss_dssp EEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS---CCCSSSEECHHHHHHHHHHHHHSSTT---EEEEEEESSHHHHHHH T ss_pred EEEECCCHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCHHHHHH T ss_conf 98750278977408998999999999997527---86478757699999999999867755---3158724860289999 Q ss_pred HHHHHH-------HCC-HHHHHHHCCCHHHH-HHHHHHCC-------------EEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 999997-------200-10101310551389-99998299-------------699986044666776667788999998 Q T0591 117 AVAATV-------ARG-DKVAIVQPDYFANR-KLVEFFEG-------------EMVPVQLDYVSADETRAGLDLTGLEEA 174 (406) Q Consensus 117 ~~~~l~-------~pG-d~Vl~~~P~y~~~~-~~~~~~g~-------------~~v~v~~~~~~~~~~~~~~d~~~l~~~ 174 (406) +++... .+| ..|+...-+|++.. ......+. .....|... ......+.+.+++. T Consensus 131 AlklAr~~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~le~~ 206 (437) T 3bv0_A 131 AAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVP----RDYDPAYSAAFEAQ 206 (437) T ss_dssp HHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCC----SSCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHH T ss_conf 99999999875289999779998288777762011213566776777888777765678898----75434455789999 Q ss_pred HC---CCCEEEECCCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE Q ss_conf 50---25403421566-64323344-378999999998637875784175023556888765223321026786899850 Q T0591 175 FK---AGARVFLFSNP-NNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG 249 (406) Q Consensus 175 ~~---~~~k~i~l~~P-~NPTG~~~-s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S 249 (406) +. ++..++++.-+ ++--|... +++.+++|.++|++||+++|.||++..|...|.-+.. .. ....|| | -+ T Consensus 207 l~~~~~~iaAviiep~i~~~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~-~gv~PD--i--vt 280 (437) T 3bv0_A 207 LAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAA-DH-AGVSPD--I--MC 280 (437) T ss_dssp HHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GG-TTCCCS--E--EE T ss_pred HHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEE-EC-CCCCCC--H--HH T ss_conf 986078645999855625789976799799999999999729848976677689887774201-02-786886--4--41 Q ss_pred CCHHCCCCC-CCCHHHHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH Q ss_conf 400104631-12114332589999999875-----2036761245799999998565--258999999999999999999 Q T0591 250 PSKTESLSG-YRLGVAFGSRAIIARMEKLQ-----AIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHV 321 (406) Q Consensus 250 ~SK~~~~~G-lRiG~~~~~~~~i~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~ 321 (406) +||.++ .| +-+|.+++.+++.+.+..-. ...+++.+.++..++.+.|+.. +... ++.++.-+.+.+. T Consensus 281 ~~K~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~----~~~~~~g~~l~~~ 355 (437) T 3bv0_A 281 VGKALT-GGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWR----TRITELAAGLTAG 355 (437) T ss_dssp ECGGGG-TTSSCCEEEEEEHHHHHHHHCC--------CTTTTCHHHHHHHHHHHHHHHTTTHH----HHHHHHHHHHHHH T ss_pred HHCCCC-CCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHH T ss_conf 102145-67765588877499997514688876210565678879999999999999601499----9999999999999 Q ss_pred HH---HCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHH Q ss_conf 97---27994553588730787766887889899999999868918961610267999858998--50997999999999 Q T0591 322 LR---GCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARR 396 (406) Q Consensus 322 L~---~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~r 396 (406) |+ +.+.+.-... .|+++.+.+.+ ..+..++...++ ++||++.|+ .+.+|++ +..+++++++++++ T Consensus 356 L~~l~~~p~V~~vRg-~Gl~~~ie~~~-~~~~~~~~~~~~-~~Gvl~~~~-------~~~l~~~Ppl~it~~eid~~~~~ 425 (437) T 3bv0_A 356 LDTARALPAVTDVRV-CGAIGVIECDR-PVDLAVATPAAL-DRGVWLRPF-------RNLVYAMPPYICTPAEITQITSA 425 (437) T ss_dssp HGGGGGCTTEEEEEE-ETTEEEEEESS-CCCHHHHHHHHH-TTTEECCCB-------TTEEEECCCTTCCHHHHHHHHHH T ss_pred HHHHCCCCCEEEEEE-CCEEEEEEECC-CCCHHHHHHHHH-HCCCEEECC-------CCEEEEECCCCCCHHHHHHHHHH T ss_conf 997524998897741-45399999478-131999999999-699189416-------99899979988989999999999 Q ss_pred HHHHHHHHC Q ss_conf 999999856 Q T0591 397 IVTLVERYR 405 (406) Q Consensus 397 l~~~~~~~r 405 (406) |.+++++.. T Consensus 426 l~e~l~~v~ 434 (437) T 3bv0_A 426 MVEVARLVG 434 (437) T ss_dssp HHHHHHTC- T ss_pred HHHHHHHHC T ss_conf 999999864 No 125 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=99.75 E-value=4.5e-15 Score=119.85 Aligned_cols=310 Identities=19% Similarity=0.200 Sum_probs=193.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHH Q ss_conf 899999999998087888878888--9889999999999864886788670788248727899999999-7200101013 Q T0591 55 PGAFDLFSAGVQSGGVQAYTEYRG--DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIV 131 (406) Q Consensus 55 ~~~~~~~~~~~~~~~~~~Y~~~~G--~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~ 131 (406) ++..+++.+.+.++.. . .| ..+|-+.++ +..|.. ..+.++.+|.||.++++++ +.+||+|+++ T Consensus 44 ~~~~~~~~~vl~sg~~---~--~G~~v~~fE~~~a----~~~g~k-----~ai~v~SGT~AL~lal~al~i~~gdeVi~p 109 (399) T 2oga_A 44 AETDAAIARVLDSGRY---L--LGPELEGFEAEFA----AYCETD-----HAVGVNSGMDALQLALRGLGIGPGDEVIVP 109 (399) T ss_dssp HHHHHHHHHHHHHTCC---S--SSHHHHHHHHHHH----HHTTSS-----EEEEESCHHHHHHHHHHHTTCCTTCEEEEE T ss_pred HHHHHHHHHHHHCCCC---C--CCHHHHHHHHHHH----HHHCCC-----EEEEECCHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 9999999999857997---7--8976999999999----997869-----699967889999999998699993999979 Q ss_pred HCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 10551389999982996999860446667766677889999985025403421566643233443789999999986378 Q T0591 132 QPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG 211 (406) Q Consensus 132 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~ 211 (406) .-+|.+....+...|++++.+.++ ++.+.+|++.+++.++++||+|++++ .-|... ++.+|.++|++++ T Consensus 110 ~~t~~at~~ai~~~g~~pvf~Di~-----~~t~~id~~~l~~~i~~~tkaIi~vh---l~G~~~---d~~~i~~i~~~~~ 178 (399) T 2oga_A 110 SHTYIASWLAVSATGATPVPVEPH-----EDHPTLDPLLVEKAITPRTRALLPVH---LYGHPA---DMDALRELADRHG 178 (399) T ss_dssp SSSCTHHHHHHHHTTCEEEEECBC-----SSSSSBCHHHHHHHCCTTEEEECCBC---GGGCCC---CHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHCCCEEEECCC-----CCCCCCCHHHHHHHHCCCCEEEEEEC---CCCCCC---CHHHHHHHHHHCC T ss_conf 957375688999715771872143-----22125888999987276651898507---779834---5389999898749 Q ss_pred CEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHC------ Q ss_conf 7578417502355-68887652233210267868998504--0010463112114332-589999999875203------ Q T0591 212 ATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQAIV------ 281 (406) Q Consensus 212 ~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~------ 281 (406) ++||+|.+.+.-. |.|..... ..+ +.++|| +|.++..|- -|.++. ++++.+.++.++.+- T Consensus 179 i~vIEDaAqa~Ga~~~gk~~G~-------~gd--~~~fSF~~~K~l~~~Ge-GG~i~t~d~~l~~~~~~lr~~G~~~~~~ 248 (399) T 2oga_A 179 LHIVEDAAQAHGARYRGRRIGA-------GSS--VAAFSFYPGKNLGCFGD-GGAVVTGDPELAERLRMLRNYGSRQKYS 248 (399) T ss_dssp CEECEECTTCTTCEETTEETTC-------TTC--EEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHHBTTCSSTTC T ss_pred CEEEEECCCHHHHCCCCEECCC-------CCC--CEEEECCCCCCCCCCCC-CEEEECCCHHHHHHHHHHHHHCCCCCCC T ss_conf 7799968665551036441477-------443--01351368851443588-4466259999999999999809986657 Q ss_pred ------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC-CCEEEEEECCCCCCCHHHHH Q ss_conf ------67612457999999985652589999999999999999999727994553588-73078776688788989999 Q T0591 282 ------SLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ-AGSYLFPRLPKLAVAPAEFV 354 (406) Q Consensus 282 ------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-gg~~~w~~~~~~~~~~~~~~ 354 (406) .+..+.+....+..-|+. +.+..++.++..+...+.|.+..++....+. ...+.|..+.-...+..++. T Consensus 249 ~~~~G~N~rm~~lqAAigl~qL~~----ld~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~~l~ 324 (399) T 2oga_A 249 HETKGTNSRLDEMQAAVLRIRLAH----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELR 324 (399) T ss_dssp CCSCCCBCCCCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 556775136768999999999999----8999999999999999846467870067668743210000002343199999 Q ss_pred HHHHHHCCEEEEECCC--------C---CCC-CC---------CEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf 9999868918961610--------2---679-99---------85899850--99799999999999999985 Q T0591 355 KILRLQAGVVVTPGTE--------F---SPH-TA---------DSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 355 ~~Ll~~~gV~v~pG~~--------F---g~~-~~---------~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) +.| .+.||-+.+... | +.. +. ..+.|.+- .++++++.-++.|+++++++ T Consensus 325 ~~L-~~~GI~t~~~y~~plh~~p~~~~~~~~~~~~p~ae~l~~~~l~LP~~~~Lt~~di~~Ii~~I~~f~~ki 396 (399) T 2oga_A 325 SHL-DARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399) T ss_dssp HHH-HHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC T ss_pred HHH-HHCCCCEEEECCCCHHHCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999-977998655178604439887735998799989999984979785899989999999999999999986 No 126 >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Probab=99.74 E-value=1.5e-14 Score=116.38 Aligned_cols=340 Identities=9% Similarity=-0.024 Sum_probs=206.2 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CEEEEECCCCHHHHHHHHHHHH------- Q ss_conf 8889999999999808788887888898899999999998648867886--7078824872789999999972------- Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDAR--DGLIITPGTQGALFLAVAATVA------- 123 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~--~~I~it~G~~~~l~~~~~~l~~------- 123 (406) +.|.+.+.+.+.+.... ..+.......++-+.+.+|+.+.+|.+.... -.=.+|.|+++++.+++.+.-. T Consensus 54 ~~~~a~~l~~~~~~~N~-~~~~~~P~~~~lE~~v~~~la~L~g~p~~~~~~~~G~~t~G~sea~l~a~~aar~~~~~~~~ 132 (452) T 2dgk_A 54 DDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452) T ss_dssp CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999999984378-88543732999999999999997099953257865731143689999999999999987765 Q ss_pred ----C-CHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH Q ss_conf ----0-01010131055138999998299699986044666776667788999998502540342156664323344378 Q T0591 124 ----R-GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 198 (406) Q Consensus 124 ----p-Gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~ 198 (406) + ...++++...+.+....++.+|.+++.||++ +.++.+|+++|+++++++|.+++.+.++|.||.+-+.+ T Consensus 133 ~~g~~~~~~~~~s~~~H~s~~Kaa~~~gi~~~~vp~~-----~~~~~~d~~~l~~~i~~~t~~vv~~~gtt~tG~~dpi~ 207 (452) T 2dgk_A 133 AAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMR-----PGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQ 207 (452) T ss_dssp HTTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCB-----TTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHH T ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCHH T ss_conf 4068877617997763199999999849954298453-----88873279999998653655357745760678757710 Q ss_pred HHHHHHHH---HHHCCCEEEECCCCCCCC--CCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH-HHHHH Q ss_conf 99999999---863787578417502355--6888765223321026786899850400104631121143325-89999 Q T0591 199 EIGQIAAL---AARYGATVIADQLYSRLR--YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIA 272 (406) Q Consensus 199 ~l~~i~~~---a~~~~~~ii~De~Y~~l~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~-~~~i~ 272 (406) ++.+|++. |+++|+|+.+|-+|+.+. |.......... ...--....|..|.+..| .-+|+++.. ++... T Consensus 208 ~i~~i~~~~~~a~~~~i~~HVDaA~gg~~~~~~~~~~~~~~~----~~~~DSi~~s~HK~~~~P-~g~g~l~~r~~~~~~ 282 (452) T 2dgk_A 208 PLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFR----LPRVKSISASGHKFGLAP-LGCGWVIWRDEEALP 282 (452) T ss_dssp HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT----STTEEEEEEETTTTTCCC-SSCEEEEESSGGGSC T ss_pred HHHHHHHHHHHHHHCCCEEEEECHHCCCEEEEEHHHHHHHCC----CCCCCEEECCCCCCCCCC-CCEEEEEECCHHHHH T ss_conf 567899999887505926998602304323532222555425----546641213633247888-871688863645533 Q ss_pred HHHHHH-HH-------CCCCHHH-HHHHHH-HHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC---CC--C Q ss_conf 999875-20-------3676124-579999-9998-565258999999999999999999972799455358---87--3 Q T0591 273 RMEKLQ-AI-------VSLRAAG-YSQAVL-RGWF-DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP---QA--G 336 (406) Q Consensus 273 ~l~~~~-~~-------~~~~~~~-~~q~a~-~~~l-~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p---~g--g 336 (406) ...... .+ .+...+. ..+.+. ...+ .-+..-.++...+..+..+.+.+.|++++++++..| +. . T Consensus 283 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~el~~~~~p~~~~~ 362 (452) T 2dgk_A 283 QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIP 362 (452) T ss_dssp GGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSS T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE T ss_conf 32123456447777776555677730133445667761530689999999999999999998689849997788875258 Q ss_pred EEEEEECC--CCCCCHHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 07877668--878898999999998689189616102679--9985899850--997999999999999999856 Q T0591 337 SYLFPRLP--KLAVAPAEFVKILRLQAGVVVTPGTEFSPH--TADSVRLNFS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 337 ~~~w~~~~--~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~--~~~~iRis~~--~~~e~l~~al~rl~~~~~~~r 405 (406) .+.|--.+ ..+.+..++...| .+.|+.+ |+..+.+. ....+|+++. .+.+++++.++.|++.+++++ T Consensus 363 ~v~f~~~~~~~~~~~~~~la~~L-~~~G~~v-~a~~~p~~~~~~~vlRv~v~~~~t~e~id~~v~dl~~~v~~l~ 435 (452) T 2dgk_A 363 AVCFKLKDGEDPGYTLYDLSERL-RLRGWQV-PAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452) T ss_dssp EEEEEECTTCCCSCCHHHHHHHH-HHTTCBC-CEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCHHHHHHHH-HHCCCEE-ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99995457556897899999999-9759832-2256787666857999984699999999999999999999999 No 127 >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Probab=99.74 E-value=5.4e-14 Score=112.52 Aligned_cols=312 Identities=18% Similarity=0.206 Sum_probs=194.9 Q ss_pred CCHHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHH Q ss_conf 8889999999999808788-88788889889999999999864886788670788248727899999999-720010101 Q T0591 53 PTPGAFDLFSAGVQSGGVQ-AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAI 130 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~ 130 (406) .....++++.+.+.++... ..++. ..++.+.++++ +|. ...+.++.+|.||.+++.++ +.+||+|++ T Consensus 15 ~~~~e~~~~~~~l~sg~~~~~~G~~--v~~fE~~~a~~----~g~-----k~av~~~SgT~Al~lal~~l~~~~gdeVi~ 83 (388) T 1b9h_A 15 YDDAERNGLVRALEQGQWWRMGGDE--VNSFEREFAAH----HGA-----AHALAVTNGTHALELALQVMGVGPGTEVIV 83 (388) T ss_dssp CCHHHHHHHHHHHHTSCCBTTTCSH--HHHHHHHHHHH----TTC-----SEEEEESCHHHHHHHHHHHTTCCTTCEEEE T ss_pred CCHHHHHHHHHHHHCCCEEECCCHH--HHHHHHHHHHH----HCC-----CEEEEECCHHHHHHHHHHHCCCCCCCEEEE T ss_conf 7999999999999749924358989--99999999999----787-----959995788999999999849998399997 Q ss_pred HHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 31055138999998299699986044666776667788999998502540342156664323344378999999998637 Q T0591 131 VQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY 210 (406) Q Consensus 131 ~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~ 210 (406) +.-+|+.....+...|++++.+.++ +..+.+|++.+++.+++++|++++++. .|... ++.++.++|+++ T Consensus 84 p~~t~~a~~~~i~~~g~~pv~~Dv~-----~~~~~~d~~~~~~~~~~~tk~i~~v~~---~g~~~---d~~~i~~~~~~~ 152 (388) T 1b9h_A 84 PAFTFISSSQAAQRLGAVTVPVDVD-----AATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMA---DMDALAKISADT 152 (388) T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBC-----TTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCC---CHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHCCCEEEEECCC-----CCCCCCCHHHHHHHHHCCCCCCCCCCC---CCCCC---CHHHHHHHHHHH T ss_conf 8984734257897569889985044-----454568999999885056424534356---67654---577889999980 Q ss_pred CCEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHC----- Q ss_conf 87578417502355-68887652233210267868998504--0010463112114332-589999999875203----- Q T0591 211 GATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQAIV----- 281 (406) Q Consensus 211 ~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~----- 281 (406) ++++|+|.+.+... ++|... . ...+ +.+.|| +|.++. | .-|.++. ++++.+.++.++.+. T Consensus 153 ~i~lIeD~a~a~g~~~~g~~~---G----~~gd--~~~~Sf~~~K~i~~-g-~GG~i~t~d~~~~~~~~~~~~~g~~~~~ 221 (388) T 1b9h_A 153 GVPLLQDAAHAHGARWQGKRV---G----ELDS--IATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPR 221 (388) T ss_dssp TCCBCEECTTCTTCEETTEEG---G----GSSS--CEEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCT T ss_pred CCEEEECCCCCCCCEECCEEE---C----CCCC--EEEECCCCCCCCCC-C-CCEEEEECCHHHHHHHHHHHHCCCCCCC T ss_conf 982331212113815899871---3----5534--23213665546767-6-7817872898999999999973899788 Q ss_pred ----------CC--CHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC-----CCEEE-EEE Q ss_conf ----------67--612457999-999985652589999999999999999999727994553588-----73078-776 Q T0591 282 ----------SL--RAAGYSQAV-LRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ-----AGSYL-FPR 342 (406) Q Consensus 282 ----------~~--~~~~~~q~a-~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~-----gg~~~-w~~ 342 (406) .. ..+.+ |++ +..-|+ .+.+..+..+++.+.+.+.|.+++++...... ..+|. .+. T Consensus 222 ~~~~~~~~~~G~n~rm~~l-~Aaig~~qL~----~l~~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~ 296 (388) T 1b9h_A 222 DDRRYFHKIAGSNMRLNEF-SASVLRAQLA----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFR 296 (388) T ss_dssp TCSSCCCCSCCCBCBCBHH-HHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEE T ss_pred CCCCEEECCCCCCCCCCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE T ss_conf 7642010236666664246-6999999999----9999999999999999997037998404665766552000100023 Q ss_pred CCCCC-CCHHHHHHHHHHHCCEEEEECC-------C---CCCCC-----------------CCEEEEEEC--C-CHHHHH Q ss_conf 68878-8989999999986891896161-------0---26799-----------------985899850--9-979999 Q T0591 343 LPKLA-VAPAEFVKILRLQAGVVVTPGT-------E---FSPHT-----------------ADSVRLNFS--Q-DHEAAV 391 (406) Q Consensus 343 ~~~~~-~~~~~~~~~Ll~~~gV~v~pG~-------~---Fg~~~-----------------~~~iRis~~--~-~~e~l~ 391 (406) ++... .+..++.+.| .+.||-+.... . ++... +..+.|.+- . ++++++ T Consensus 297 ~~~~~~~~R~~l~~~L-~~~gI~~~~~y~plh~~~~f~~~~~~~~~~~~~~~~~Pna~~i~~~~l~LP~~~~Lt~e~di~ 375 (388) T 1b9h_A 297 IPGLTEERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELH 375 (388) T ss_dssp CTTCCHHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHH T ss_pred EECCCHHHHHHHHHHH-HHCCCCEEECCCCHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCEEECCCCCCCCCHHHHH T ss_conf 3012246899999999-987998753684221397888649874444333467989999982989864899999899999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999998 Q T0591 392 AAARRIVTLVER 403 (406) Q Consensus 392 ~al~rl~~~~~~ 403 (406) ..++.|++++++ T Consensus 376 ~I~~~i~~~l~~ 387 (388) T 1b9h_A 376 ATAEIIADAVAR 387 (388) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHC T ss_conf 999999999961 No 128 >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Probab=99.73 E-value=1.5e-14 Score=116.23 Aligned_cols=324 Identities=13% Similarity=0.100 Sum_probs=198.5 Q ss_pred CCEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 8334156--78678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSH--GDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~--G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.||+.. |...+.+-.|.+.+++.+++...... +..... +.+..+++.+....+. .-+.+..+++++++... T Consensus 46 ~~iD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~--~~~~~~-~~~~~la~~l~~~~~~---~~~~v~f~~sGseAve~ 119 (395) T 1vef_A 46 EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQTLPT-PMRGEFYRTLTAILPP---ELNRVFPVNSGTEANEA 119 (395) T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--CTTSCC-HHHHHHHHHHHHTSCT---TEEEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCCCCC-CHHHHHHHHCCCCCCC---CCCEEEECCCCCHHHHH T ss_conf 99985607876645179699999999999750324--664564-0566766530332334---44303421575348999 Q ss_pred HHHHH---HHCCHHHHHHHCCCHHHHHHHHHHCCE-------------EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 99999---720010101310551389999982996-------------99986044666776667788999998502540 Q T0591 117 AVAAT---VARGDKVAIVQPDYFANRKLVEFFEGE-------------MVPVQLDYVSADETRAGLDLTGLEEAFKAGAR 180 (406) Q Consensus 117 ~~~~l---~~pGd~Vl~~~P~y~~~~~~~~~~g~~-------------~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k 180 (406) +++.. .+ ...|+...-+|++........... .+.+| ..|++.|++.+.+++. T Consensus 120 Alk~ar~~t~-r~~ii~~~~~yHG~t~~a~~~s~~~~~~~~~~p~~~~~~~~p-----------~nd~~~l~~~~~~~ia 187 (395) T 1vef_A 120 ALKFARAHTG-RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP-----------YNDVEALKRAVDEETA 187 (395) T ss_dssp HHHHHHHHHS-CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC-----------TTCHHHHHHHCCTTEE T ss_pred HHHHHHHHCC-CCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEC-----------CCCHHHHHHHCCCCEE T ss_conf 9999887133-422312246789986433763478655678878899826867-----------8979999975689747 Q ss_pred EEECCCC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC Q ss_conf 3421566--643233-4437899999999863787578417502355688876522332102678689985040010463 Q T0591 181 VFLFSNP--NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS 257 (406) Q Consensus 181 ~i~l~~P--~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 257 (406) ++++ -| .| .|. ..+++.++++.++|++||+++|.||+...|.-.|.-+.. .. ....|| + -.++|.++ . T Consensus 188 avi~-EPi~g~-~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tGfgRtG~~~~~-~~-~gv~PD--i--~~~gK~l~-~ 258 (395) T 1vef_A 188 AVIL-EPVQGE-GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAF-EH-FGIVPD--I--LTLAKALG-G 258 (395) T ss_dssp EEEE-CSEETT-TTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH-HH-HTCCCS--E--EEECGGGG-T T ss_pred EEEE-ECCCCC-CCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC-CC-CCCCCC--E--EEEEECCC-C T ss_conf 9999-787787-7885499899999999999869169841121157736777542-25-786777--7--89703477-8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECCCC Q ss_conf 1121143325899999998752036761245799999998565258999999999999999999972799--45535887 Q T0591 258 GYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEG--VFARTPQA 335 (406) Q Consensus 258 GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g--~~~~~p~g 335 (406) |+-++.+++..++++.+.......+++.++++..++.+.|+... -.+..++.+++-+.+.+.|+++.. +.-.... T Consensus 259 G~~~~a~~~~~~~~~~~~~~~~~~T~~gnpla~aAa~a~L~~i~--~~~~~~~~~~~g~~l~~~L~~l~~~~v~~vrg~- 335 (395) T 1vef_A 259 GVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE--RTRLWERAAELGPWFMEKLRAIPSPKIREVRGM- 335 (395) T ss_dssp TSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEE- T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC- T ss_conf 67775433310232022368735537998620021010122212--322014799974899999996179857985245- Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHH Q ss_conf 30787766887889899999999868918961610267999858998--5099799999999999999 Q T0591 336 GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLV 401 (406) Q Consensus 336 g~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~ 401 (406) |++.-+.+.+. ....+.. ++.++|+++.+. +++.+|++ +..+++++++++++|.+++ T Consensus 336 G~m~~i~~~~~--~~~~~~~-~~~~~g~l~~~~------g~~~i~~~PpL~it~~eid~~l~~l~~aL 394 (395) T 1vef_A 336 GLMVGLELKEK--AAPYIAR-LEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395) T ss_dssp TTEEEEEESSC--SHHHHHH-HHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH T ss_pred CEEEEEEECCC--CHHHHHH-HHHHCCCEEEEC------CCCEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 48999997177--5689999-999789769942------89999997972499999999999999985 No 129 >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Probab=99.72 E-value=4e-14 Score=113.38 Aligned_cols=316 Identities=17% Similarity=0.126 Sum_probs=185.8 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHC Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999720010101310 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQP 133 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P 133 (406) ++.++++ +.....++..+. ..++-+.+.+.+++.++.+ + +.|+++.|+|.++..++..++.|||+|++..- T Consensus 13 ~~~V~~A----m~~~~~~hr~~~--f~~~~~~~~~~l~~ll~~~--~-~~i~~~gsgT~a~e~~~~nl~~~g~~vl~~~~ 83 (352) T 1iug_A 13 HPKALEA----LARPQLHHRTEA--AREVFLKARGLLREAFRTE--G-EVLILTGSGTLAMEALVKNLFAPGERVLVPVY 83 (352) T ss_dssp CHHHHHH----HHSCCCCTTSHH--HHHHHHHHHHHHHHHHTCS--S-EEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC T ss_pred CHHHHHH----HCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCC--C-CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 8999998----667878978899--9999999999999996899--9-68999684699999999974356885699842 Q ss_pred CCHH--HHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 5513--89999982996999860446667766677889999985025403421566643233443789999999986378 Q T0591 134 DYFA--NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG 211 (406) Q Consensus 134 ~y~~--~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~ 211 (406) ++.+ ....++.+|.+++.+..+. +..++.++ ...++++.++++...|.||...+ +++|.++|++++ T Consensus 84 G~fg~~~~~~a~~~~~~~~~~~~~~------g~~~~~~~---~~~~~~~~v~~~h~etstG~~~~---i~~i~~~~~~~~ 151 (352) T 1iug_A 84 GKFSERFYEIALEAGLVVERLDYPY------GDTPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKN 151 (352) T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT------TCCCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHC T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCC------CCCCCHHH---HCCCCCCEEEEEECCCCCEEECC---HHHHHHHHHHHC T ss_conf 7148789999998088642231225------76554133---03678874899931686413343---788999876300 Q ss_pred --CEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHC-CCCCCCCHHHHHHHHHHHHHH------------- Q ss_conf --7578417502355688876522332102678689985040010-463112114332589999999------------- Q T0591 212 --ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGSRAIIARME------------- 275 (406) Q Consensus 212 --~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~~~~~~~i~~l~------------- 275 (406) .++++|.+-+.. ..+ -.+... ..+ +++.|--|.+ +.|| +|+++.+++.++++. T Consensus 152 ~~~l~~vDavss~g---~~~-~~~d~~---~iD--~~~~s~qK~l~gp~G--~~~v~~s~~~le~~~~~~~~~dl~~~~~ 220 (352) T 1iug_A 152 PEGLVGADMVTSLL---VGE-VALEAM---GVD--AAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELK 220 (352) T ss_dssp TTCEEEEECTTTBT---TBC-CCSGGG---TCS--EEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHH T ss_pred CCCCEECHHHCCCC---CCC-CCCCCC---CCC--EEEECCCCCCCCCCC--CCCHHCCHHHHHHHCCCCCCCCHHHHHH T ss_conf 02331000111443---332-102466---888--799657664246997--0210058999986207777677999986 Q ss_pred HHHHHCCCCHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC-EEEEEECCCCCCCHHHH Q ss_conf 8752036761245-799999998565258999999999999999999972799455358873-07877668878898999 Q T0591 276 KLQAIVSLRAAGY-SQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAG-SYLFPRLPKLAVAPAEF 353 (406) Q Consensus 276 ~~~~~~~~~~~~~-~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg-~~~w~~~~~~~~~~~~~ 353 (406) ......+.+++.. .-.++..+|+.......+..++.+...+.+.+ +.+..|++......+ .-+-+.+|+ +.+..++ T Consensus 221 ~~~~g~~~~Tp~v~~i~al~~aL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~~~~~s~~v~~~~~p~-g~~~~~~ 298 (352) T 1iug_A 221 AQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYG-VGEEGGLRPVPKRFSPAVAAFYLPE-GVPYARV 298 (352) T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH-HHHHTTCEESCSSBCTTCEEEECCT-TCCHHHH T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCEEEEECCC-CCCHHHH T ss_conf 5434898876753799999999999998868999999998877777-9985686657534699469997999-9999999 Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEE-EC-CCHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999868918961610267999858998-50-9979999999999999998569 Q T0591 354 VKILRLQAGVVVTPGTEFSPHTADSVRLN-FS-QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 354 ~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-~~-~~~e~l~~al~rl~~~~~~~ra 406 (406) ...| +++||.+.+|. ++-....+||+ ++ .++++++..++.|++++++.+. T Consensus 299 ~~~l-~~~gi~i~~G~--~~l~~~~~RIg~mG~~~~~di~~~~~~l~~~l~~~~~ 350 (352) T 1iug_A 299 KEAF-AQRGAVIAGGQ--GPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352) T ss_dssp HHHH-HTTTEECEECC--GGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC- T ss_pred HHHH-HHCCEEEECCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9999-97792997677--3137968988689999999999999999999999727 No 130 >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyridoxal phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Probab=99.72 E-value=3.9e-14 Score=113.50 Aligned_cols=347 Identities=14% Similarity=0.059 Sum_probs=192.7 Q ss_pred CCEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 8334156--786788788899999999998087888878888-9889999999999864886788670788248727899 Q T0591 39 RPVDFSH--GDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRG-DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 39 ~~i~ls~--G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) +.|||.. |...+-+-.|.+.+++.+++.... |....+ .-+....+++.+......+ ..+.++.+++++++.. T Consensus 57 ~ylD~~~g~~~~~lGh~hP~i~~Ai~~q~~~~~---~~~~~~~~~~~~~~lae~L~~~~p~~--~~~~v~f~~sGseAve 131 (452) T 3dxv_A 57 ELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA---GATILSASNAPAVTLAERLLASFPGE--GTHKIWFGHSGSDANE 131 (452) T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS---CSCSSSSEEHHHHHHHHHHHHTTTCT--TTEEEEEESSHHHHHH T ss_pred EEEEECHHHHHHHHCCCCHHHHHHHHHHHHCCC---CCCCCCCCCHHHHHHHHHHHHHCCCC--CCCEEEECCCHHHHHH T ss_conf 998802218889856997899999999974205---84468768889999999999867735--7898998596599999 Q ss_pred HHHHHHHH-C-CHHHHHHHCCCHHHHHHHHH-HCC----------EEEEEEECCCCCCCCCCCCC----HHHHHHHHC-- Q ss_conf 99999972-0-01010131055138999998-299----------69998604466677666778----899999850-- Q T0591 116 LAVAATVA-R-GDKVAIVQPDYFANRKLVEF-FEG----------EMVPVQLDYVSADETRAGLD----LTGLEEAFK-- 176 (406) Q Consensus 116 ~~~~~l~~-p-Gd~Vl~~~P~y~~~~~~~~~-~g~----------~~v~v~~~~~~~~~~~~~~d----~~~l~~~~~-- 176 (406) .+++.... . .+.|+..+-+|++....... .|. ....++....... ....+. .+.+++.+. T Consensus 132 ~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~e~~~~~ 210 (452) T 3dxv_A 132 AAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP-YRNDPTGDAILTLLTEKLAAV 210 (452) T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHTTCC------------EEEECCCCSSSC-BTTBTTSHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCCHHHHHHHHHHHHHHHC T ss_conf 9999999975899699963577887410244357876566667778322588987667-788716899999999999723 Q ss_pred --CCCEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCH Q ss_conf --25403421566--64323344378999999998637875784175023556888765223321026786899850400 Q T0591 177 --AGARVFLFSNP--NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 252 (406) Q Consensus 177 --~~~k~i~l~~P--~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 252 (406) +++.++++ -| .+--....+++.+++|.++|++||+++|.||++..|...|..... . .....|| |++ ++| T Consensus 211 ~~~~iaAvii-EPv~g~~G~~~p~~~~L~~l~~lc~~~gillI~DEV~tG~gRtG~~~~~-~-~~gv~PD--iv~--~gK 283 (452) T 3dxv_A 211 PAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCF-E-HEGFVPD--ILV--LGK 283 (452) T ss_dssp CTTCEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGG-G-GTTCCCS--EEE--ECG T ss_pred CCCCEEEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCE-E-CCCCCCC--EEE--ECC T ss_conf 6887689999-3745788953789999999999999809479954653247777683210-0-0698887--787--413 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 104631121143325899999998752036761245799999998565--258999999999999999999972799455 Q T0591 253 TESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFA 330 (406) Q Consensus 253 ~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~ 330 (406) ..+ .|+-+|.+++.+++.+..... ...+++.+.++..++.+.|+.. +...+.....-+..++.+.+...+.+.+.- T Consensus 284 ~~~-gg~Pi~av~~~~ei~~~~~~~-~~~t~~g~p~~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~ 361 (452) T 3dxv_A 284 GLG-GGLPLSAVIAPAEILDCASAF-AMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGD 361 (452) T ss_dssp GGG-TTSCCEEEEEEHHHHTSCSSS-SCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE T ss_pred CCC-CCCCCCCCCCHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 466-777751224518875056766-667678986999999999999981777999999999999999999974898689 Q ss_pred ECCCCCEEEEEEC--C-CCCC-C---HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHH Q ss_conf 3588730787766--8-8788-9---899999999868918961610267999858998--5099799999999999999 Q T0591 331 RTPQAGSYLFPRL--P-KLAV-A---PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLV 401 (406) Q Consensus 331 ~~p~gg~~~w~~~--~-~~~~-~---~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~ 401 (406) ....| +++=+.+ + .... + ...++.++++ .||++.+.. . ..+.+|+. +..+++++++++++|.+.+ T Consensus 362 vrG~G-l~~gie~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~---~-~~~~ir~~Ppl~~t~~eid~~~~~l~~al 435 (452) T 3dxv_A 362 IRGRG-LACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVG---M-NGNVLEFTPPLTITETDIHKALDLLDRAF 435 (452) T ss_dssp EEEET-TEEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEES---T-TSCEEEECCCTTCCHHHHHHHHHHHHHHH T ss_pred EEECC-EEEEEEEEECCCCCCCCHHHHHHHHHHHHH-CCCEEECCC---C-CCCEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 96113-499999950566567448999999999997-898883246---8-89999996988889999999999999999 Q ss_pred HHHCC Q ss_conf 98569 Q T0591 402 ERYRA 406 (406) Q Consensus 402 ~~~ra 406 (406) +++.| T Consensus 436 ~~l~a 440 (452) T 3dxv_A 436 SELSA 440 (452) T ss_dssp HTGGG T ss_pred HHHHH T ss_conf 99987 No 131 >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippurate, 3-hydroxyhippuric acid; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Probab=99.71 E-value=6.4e-15 Score=118.79 Aligned_cols=318 Identities=13% Similarity=0.081 Sum_probs=181.0 Q ss_pred HHHHHHHHHHHHC-------CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH--- Q ss_conf 8999999999980-------878888788-88988999999999986488678867078824872789999999972--- Q T0591 55 PGAFDLFSAGVQS-------GGVQAYTEY-RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA--- 123 (406) Q Consensus 55 ~~~~~~~~~~~~~-------~~~~~Y~~~-~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~--- 123 (406) ....+++.+.+.. +...+..+. .....+|+.+|+++ |.+ + ++|++|+|+|++++.++.++.. T Consensus 81 ~~~~~~i~~~l~~w~~~~~~~~~~~~~~w~~~~e~~r~~iA~li----GA~--~-~EVv~t~s~T~~l~~~l~~~~~~~~ 153 (465) T 3e9k_A 81 KMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----GAN--E-KEIALMNALTVNLHLLMLSFFKPTP 153 (465) T ss_dssp TTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----TCC--G-GGEEECSCHHHHHHHHHHHHCCCCS T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH----CCC--C-CCEEEECCCHHHHHHHHHHHHHHCC T ss_conf 89999999999999863647776676535579999999998870----949--7-8589978807999999974244337 Q ss_pred CCHHHHHHHCCCHHHHHHH----HHHCCEEE--EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 0010101310551389999----98299699--98604466677666778899999850254034215666432334437 Q T0591 124 RGDKVAIVQPDYFANRKLV----EFFEGEMV--PVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 124 pGd~Vl~~~P~y~~~~~~~----~~~g~~~v--~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) .+++|++..-.|++-...+ +..|.++. .+.......+......|++++.+.++++|+++.++.-||-||.+++ T Consensus 154 ~~~~Ii~~~~efps~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~t~lV~ls~V~~~tG~~~d- 232 (465) T 3e9k_A 154 KRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN- 232 (465) T ss_dssp SSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC- T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEECC- T ss_conf 8852553100265349999999998099751333314777876644554199999626899769999576777754676- Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCC-CCCCCCHHHHHHHHHHHHHH- Q ss_conf 8999999998637875784175023556888765223321026786899850400104-63112114332589999999- Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTES-LSGYRLGVAFGSRAIIARME- 275 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlRiG~~~~~~~~i~~l~- 275 (406) +++|.++|+++|+++++|-+++- |.-+..+.... .+ +++.|..|.+. -|| =+|++...+++.+.+. T Consensus 233 --i~~I~~~a~~~g~~v~vD~aqa~----G~~pidv~~~~---vD--f~~~s~hK~l~~GP~-G~g~lyv~~~~~~~~~p 300 (465) T 3e9k_A 233 --IPAITKAGQAKGCYVGFDLAHAV----GNVELYLHDWG---VD--FACWCSYKYLNAGAG-GIAGAFIHEKHAHTIKP 300 (465) T ss_dssp --HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHT---CC--EEEECSSSTTCCCTT-CCCEEEECGGGTTTSCC T ss_pred --HHHHHHHHHHCCCEEEEECCCCC----CCCCCCHHHHC---CC--EEEEECCCCCCCCCC-EEEEEEECHHHHHHHHC T ss_conf --99999998545967999873442----00265477745---78--189763556357997-38999845677765213 Q ss_pred ------------HHH------------HHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHC----- Q ss_conf ------------875------------20367612457999999985652-589999999999999999999727----- Q T0591 276 ------------KLQ------------AIVSLRAAGYSQAVLRGWFDEAP-GWMEDRIARHQAIRDELLHVLRGC----- 325 (406) Q Consensus 276 ------------~~~------------~~~~~~~~~~~q~a~~~~l~~~~-~~~~~~~~~~~~~r~~l~~~L~~~----- 325 (406) ++. .......+.....+....++... .-+.+.+++.....+.+.+.+... T Consensus 301 ~~~g~~~~~~~~~f~~~~~~~~~~~~~~~~~gt~~~~~~~~~~a~l~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~ 380 (465) T 3e9k_A 301 ALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDK 380 (465) T ss_dssp SSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--- T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 56687653354000101345655304555405764014678999999987536999999999999999999875437422 Q ss_pred -----CCCEEECCC-----CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHHHHHH Q ss_conf -----994553588-----73078776688788989999999986891896161026799985899850---99799999 Q T0591 326 -----EGVFARTPQ-----AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVA 392 (406) Q Consensus 326 -----~g~~~~~p~-----gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~l~~ 392 (406) .++.+..|. |+. +-+.++.. +.++.+. |.++||++. |. .++.||+|++ ++.++++. T Consensus 381 ~~~~~~~~~i~tP~~~~~Rg~~-vs~~~~~~---~~~v~~~-L~~~gIi~d----~R--~~~~iRis~~~~Ynt~edId~ 449 (465) T 3e9k_A 381 AATKKPVVNIITPSHVEERGCQ-LTITFSVP---NKDVFQE-LEKRGVVCD----KR--NPNGIRVAPVPLYNSFHDVYK 449 (465) T ss_dssp ------CEEECSCSSGGGBCSC-EEEEECCT---TCCHHHH-HHTTTEECE----EE--TTTEEEEBCCTTTCCHHHHHH T ss_pred CCCCCCCEEEECCCCHHHCCCE-EEEECCCC---HHHHHHH-HHHCCCEEC----CC--CCCEEEEECCCCCCCHHHHHH T ss_conf 3346786257467767353047-99975898---7999999-998798862----45--889799968977899999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999998 Q T0591 393 AARRIVTLVER 403 (406) Q Consensus 393 al~rl~~~~~~ 403 (406) +++.|+++++. T Consensus 450 ~i~~L~~il~~ 460 (465) T 3e9k_A 450 FTNLLTSILDS 460 (465) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHHH T ss_conf 99999999850 No 132 >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent enzyme, pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Probab=99.71 E-value=4.5e-14 Score=113.02 Aligned_cols=338 Identities=14% Similarity=0.106 Sum_probs=195.1 Q ss_pred CEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 3341567--86788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 40 PVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 40 ~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) .+||..| ...+-+-.|.+.+++.+.+........... .++...+++.+.+..+ .+.++.+++++++...+ T Consensus 78 ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~---~~~~~~la~~l~~~~~-----~~~v~f~~SGseA~e~A 149 (439) T 2oat_A 78 YFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFY---NNVLGEYEEYITKLFN-----YHKVLPMNTGVEAGETA 149 (439) T ss_dssp EEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSE---ESSHHHHHHHHHHHHT-----CSEEEEESSHHHHHHHH T ss_pred EEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHH T ss_conf 998157898775457999999999999875114675434---4699999999986258-----77699706732356899 Q ss_pred HHHHHH---------C-CHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCC---CCCCCHHHHHHHHCC-CCEEEE Q ss_conf 999972---------0-01010131055138999998299699986044666776---667788999998502-540342 Q T0591 118 VAATVA---------R-GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADET---RAGLDLTGLEEAFKA-GARVFL 183 (406) Q Consensus 118 ~~~l~~---------p-Gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~---~~~~d~~~l~~~~~~-~~k~i~ 183 (406) +..... . ...++...-.|++................ ...+.... --.-|++++++.+.+ ++.+++ T Consensus 150 iklar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~s~~~~~~~~~-~~~p~~~~~~~~~~~d~~~l~~~l~~~~iAavi 228 (439) T 2oat_A 150 CKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD-GFGPFMPGFDIIPYNDLPALERALQDPNVAAFM 228 (439) T ss_dssp HHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT-TSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEE T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCHHHHHHHCCCCCEEEEE T ss_conf 9999988875078677750267436787877643444778865555-778888880574477799999854899869999 Q ss_pred CCCCCCCC-CC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CC Q ss_conf 15666432-33-44378999999998637875784175023556888765223321026786899850400104631-12 Q T0591 184 FSNPNNPA-GV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YR 260 (406) Q Consensus 184 l~~P~NPT-G~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR 260 (406) + -|-.=. |. ..+++.+++|.++|++||+++|.||+...|.-.|.-+..- . ....|| +-+++|.++ .| +- T Consensus 229 ~-EPiqg~gG~~~p~~~fl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~-~-~gv~PD----ivt~gK~l~-~G~~p 300 (439) T 2oat_A 229 V-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD-Y-ENVRPD----IVLLGKALS-GGLYP 300 (439) T ss_dssp E-CSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG-G-GTCCCS----EEEECGGGG-TTSSC T ss_pred E-CCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH-H-CCCCCC----EEEECCHHH-CCCCC T ss_conf 7-88328889843999999999999986383798335330668558851577-6-499999----999686656-89845 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECCCCCEE Q ss_conf 1143325899999998752036761245799999998565258999999999999999999972799--45535887307 Q T0591 261 LGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEG--VFARTPQAGSY 338 (406) Q Consensus 261 iG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g--~~~~~p~gg~~ 338 (406) +|.+++.+++.+.+.......+++.++++..++.+.++.-++ ++..++.+++-+.+.+.|+++.. +.-.... |++ T Consensus 301 ~~av~~~~~i~~~~~~~~~~~Tf~gnp~~~Aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~v~~vRG~-Gl~ 377 (439) T 2oat_A 301 VSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVRGK-GLL 377 (439) T ss_dssp CEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEE-TTE T ss_pred CEEEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCCCCCEEECCC-CCE T ss_conf 213530188996347888677888798999989999999870--36116999999999999985523662220357-628 Q ss_pred EEEECCCC-CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHHH Q ss_conf 87766887-889899999999868918961610267999858998--5099799999999999999985 Q T0591 339 LFPRLPKL-AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 339 ~w~~~~~~-~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~~~~~~ 404 (406) +=+.+.+. ..+..+++..++ +.||++.| .+.+.+|++ +..+++++++++++|.+.+++| T Consensus 378 ~~i~l~~~~~~~~~~~~~~~~-~~Gll~~~------~~~~~irl~PpL~it~~eid~~~~~l~~al~~f 439 (439) T 2oat_A 378 NAIVIKETKDWDAWKVCLRLR-DNGLLAKP------THGDIIRFAPPLVIKEDELRESIEIINKTILSF 439 (439) T ss_dssp EEEEECCCSSCCHHHHHHHHH-HTTEECCB------SSSSEEEECCCTTCCHHHHHHHHHHHHHHHHTC T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCEEEEC------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 999982688601999999999-69938933------799989997996889999999999999999719 No 133 >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, structural genomics, JCSG, PSI, protein structure initiative; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Probab=99.70 E-value=1.3e-14 Score=116.74 Aligned_cols=317 Identities=14% Similarity=0.109 Sum_probs=183.9 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHC Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999720010101310 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQP 133 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P 133 (406) +|.++++ +......++++ ...++-+.+.+.+++..|.+- ...|+++.|+|.+++.++..++.+|+.+++... T Consensus 46 ~~~Vl~A----m~~~~~~HR~~--~f~~l~~ear~~L~~ll~~~~--~~~i~~~g~gT~a~~a~i~~l~~~~~~~~~~~~ 117 (393) T 1vjo_A 46 HPSVLQA----MNVSPVGHLDP--AFLALMDEIQSLLRYVWQTEN--PLTIAVSGTGTAAMEATIANAVEPGDVVLIGVA 117 (393) T ss_dssp CHHHHHH----HSSCCCCTTSH--HHHHHHHHHHHHHHHHHTCCC--SCEEEESSCHHHHHHHHHHHHCCTTCEEEEEES T ss_pred CHHHHHH----HCCCCCCCCCH--HHHHHHHHHHHHHHHHHCCCC--CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 8999997----57689997868--999999999999999958999--828998882999999999976403566453101 Q ss_pred CCHHHHHHH--HHHCCEEEEEEECCCCCCCCCCCCCHHHHH-HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 551389999--982996999860446667766677889999-98502540342156664323344378999999998637 Q T0591 134 DYFANRKLV--EFFEGEMVPVQLDYVSADETRAGLDLTGLE-EAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY 210 (406) Q Consensus 134 ~y~~~~~~~--~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~-~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~ 210 (406) ++....... ...+.....+... .+...+.+..+ ....++++++.+++-+|.||...+ +++|.++|+++ T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~ 188 (393) T 1vjo_A 118 GYFGNRLVDMAGRYGADVRTISKP------WGEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF 188 (393) T ss_dssp SHHHHHHHHHHHHTTCEEEEEECC------TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCEECCCC------CCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCC---HHHHHHHHHCC T ss_conf 100001245665422221000357------787441135567650686400266664320223465---36543234205 Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHH----------- Q ss_conf 875784175023556888765223321026786899850400104631121143325899999998752----------- Q T0591 211 GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQA----------- 279 (406) Q Consensus 211 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~----------- 279 (406) |+++++|.+.+. |.....+. ..+-.+++.|-.|.++.|+ -+|+++..+..++....... T Consensus 189 g~~~ivDa~~s~----g~~~~~~d-----~~~~D~~~~s~~K~~~gp~-G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 258 (393) T 1vjo_A 189 GTLLLVDTVTSL----GGVPIFLD-----AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNL 258 (393) T ss_dssp TCEEEEECTTTT----TTSCCCTT-----TTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHH T ss_pred CCEEEEEECCCC----CCEEECCC-----CCCCCEEEECCCCCCCCCC-EEEEEECCHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 650789701355----40100122-----4567256302222457997-4783423045776542147886643301344 Q ss_pred -------HCC-CC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC---CCEEEEEECCCC Q ss_conf -------036-76-1245799999998565-2589999999999999999999727994553588---730787766887 Q T0591 280 -------IVS-LR-AAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ---AGSYLFPRLPKL 346 (406) Q Consensus 280 -------~~~-~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~---gg~~~w~~~~~~ 346 (406) ... .. ++.....+....+... ..-.....++.+++.+.+.+.+... |+....+. ....+-+.+|+ T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~- 336 (393) T 1vjo_A 259 LGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPD- 336 (393) T ss_dssp HHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCT- T ss_pred HHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCEEECCHHHHCCEEEEEECCC- T ss_conf 44311545666887634323336788887764263355442011334345454237-8168268387097599998999- Q ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE-EC--CCHHHHHHHHHHHHHHH Q ss_conf 889899999999868918961610267999858998-50--99799999999999999 Q T0591 347 AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN-FS--QDHEAAVAAARRIVTLV 401 (406) Q Consensus 347 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-~~--~~~e~l~~al~rl~~~~ 401 (406) +.++.++...|++++||.+..|... ...+.||+| ++ ++.|+++..++.|++++ T Consensus 337 ~~~~~~l~~~L~~~~gI~v~~G~~~--~~g~~~Ris~~g~~~t~edv~~lv~aL~~vL 392 (393) T 1vjo_A 337 GVDGKAVARRLLNEHNIEVGGGLGE--LAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393) T ss_dssp TCCHHHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCEEEECCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH T ss_conf 9899999999986499899668612--2699899836667899999999999999985 No 134 >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1; HET: MSE; 1.81A {Vibrio parahaemolyticus rimd 2210633} Probab=99.70 E-value=1.1e-13 Score=110.31 Aligned_cols=319 Identities=12% Similarity=0.098 Sum_probs=182.8 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH----------------C----C Q ss_conf 8087888878888988999999999986488678867078824872789999999972----------------0----0 Q T0591 66 QSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA----------------R----G 125 (406) Q Consensus 66 ~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~----------------p----G 125 (406) .......|--+.+..++-+.+.+|+.+.+|.+-.. .=++|+|+|++...++.+--+ | . T Consensus 125 ~n~~~~~~~~sp~~t~lE~~vi~wl~~~~g~~~~~--~G~~tsGGT~aNl~al~~AR~~~~~~~~~~~~~~~g~~~~~~~ 202 (497) T 2qma_A 125 LNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADK 202 (497) T ss_dssp HCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGG T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC T ss_conf 57565444455789999999999999983959888--8799281799999999999999987733343000266445687 Q ss_pred HHHHHHHCCCHHHHHHHHHHCC---EEEEEEECCCCCCCCCCCCCHHHHHHHHCCC------CEEEECCCCCCCCCCCCC Q ss_conf 1010131055138999998299---6999860446667766677889999985025------403421566643233443 Q T0591 126 DKVAIVQPDYFANRKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYS 196 (406) Q Consensus 126 d~Vl~~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPTG~~~s 196 (406) -.|++.+=.+++....+...|. .++.||.+. ++.+|+++|++.+.+. +-+++.+-.++.||.+=+ T Consensus 203 ~~i~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~------~g~md~~~L~~~i~~~~~~G~~p~~VvataGTT~~GaiDp 276 (497) T 2qma_A 203 LRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA------DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD 276 (497) T ss_dssp EEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT------TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC------CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC T ss_conf 3999877116999999998188970489855687------8857899999999988864996299983377656202467 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHHHHH Q ss_conf 7899999999863787578417502355688876522332102678689985040010463112114332-589999999 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARME 275 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~~l~ 275 (406) +++|.++|++||+|+.+|-+|+....-......+..... . .. +..+++|.++.| .-+|.+.. ++...+.+. T Consensus 277 ---l~eIa~i~~~~~~wlHVDaA~gg~~l~~~~~~~~~gie~--a-DS-it~d~HK~l~~P-~~~g~llvrd~~~l~~~~ 348 (497) T 2qma_A 277 ---LDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVER--A-HS-ISVDFHKLFYQT-ISCGALLVNDKSNFKFLL 348 (497) T ss_dssp ---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGG--C-SE-EEEETTTTTCCC-SSCEEEEESCGGGGGGGC T ss_pred ---HHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHCCCCC--E-EE-EEECCCCCCCCC-CCCCEEEEECHHHHHHHH T ss_conf ---999999997504357885043443210000033258651--0-58-863542136778-775158873377787761 Q ss_pred HHHHH-------------CCCCHHH-HH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCEEE Q ss_conf 87520-------------3676124-57-9999999856525899999999999999999997279945535-8873078 Q T0591 276 KLQAI-------------VSLRAAG-YS-QAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART-PQAGSYL 339 (406) Q Consensus 276 ~~~~~-------------~~~~~~~-~~-q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~gg~~~ 339 (406) ....+ .++..+. .. -.....+..-+..-+.+...+..+..+.+.+.|++.+++++.. |+-+..+ T Consensus 349 ~~~~yl~~~~~~~~~~~~~~l~~sRr~~aLklw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~~el~~~p~l~iV~ 428 (497) T 2qma_A 349 HHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVL 428 (497) T ss_dssp C--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE T ss_conf 35652367776678742356666865136899999986339999999999999999999997369996996798768999 Q ss_pred EEECCCCCCCHHH----HHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHH Q ss_conf 7766887889899----99999986891896161026799985899850---99799999999999999985 Q T0591 340 FPRLPKLAVAPAE----FVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 340 w~~~~~~~~~~~~----~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~l~~al~rl~~~~~~~ 404 (406) | ++.....+..+ +..++..+ |..+...+.. .+..++|++++ ++++++++.++.|.++-+++ T Consensus 429 F-r~~~~~~~~d~ln~~l~~~l~~~-G~~~~~~t~~--~g~~~lR~~v~np~tt~~did~l~~~i~~~a~eL 496 (497) T 2qma_A 429 F-RATHETADLDELNKALRLEALTR-GIAVLGETIV--DGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497) T ss_dssp E-EECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEE--TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC T ss_pred E-EECCCCCCHHHHHHHHHHHHHHC-CCEEEECCEE--CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9-82786216899999999999946-9899940259--9967999996899999999999999999999975 No 135 >3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A Probab=99.70 E-value=2.6e-14 Score=114.72 Aligned_cols=310 Identities=15% Similarity=0.182 Sum_probs=189.8 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH---------HHC Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999---------720 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT---------VAR 124 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l---------~~p 124 (406) ..+-++++.+.+.++-.+. ++. ..++-+.++++ .|.. .++.++.+|.||++++.++ +.| T Consensus 42 ~~~e~~~v~~~l~sg~~~~-G~~--v~~fE~~~a~~----~g~k-----~~v~~~sgT~Al~lal~al~~~~~~~~gl~~ 109 (437) T 3bb8_A 42 GTKELQLMVEASLDGWLTT-GRF--NDAFEKKLGEY----LGVP-----YVLTTTSGSSANLLALTALTSPKLGVRALKP 109 (437) T ss_dssp CHHHHHHHHHHHHHCCCBS-CHH--HHHHHHHHHHH----HTCS-----EEEEESCHHHHHHHHHHHTTCGGGGGGSCCT T ss_pred CHHHHHHHHHHHHCCCCCC-CHH--HHHHHHHHHHH----HCCC-----EEEEECCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9999999999997598757-987--99999999999----7989-----2999578899999999974212100036799 Q ss_pred CHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 01010131055138999998299699986044666776667788999998502540342156664323344378999999 Q T0591 125 GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIA 204 (406) Q Consensus 125 Gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~ 204 (406) ||+|++|.-+|+.....+..+|++++.+.++ .+.+.+|++.+++.++++||+|++++- -|... ++.+|. T Consensus 110 gdeVi~p~~t~~at~~ai~~~G~~pvfvDid-----~~t~~~d~~~l~~~it~~tkaIi~vh~---~G~~~---d~~~i~ 178 (437) T 3bb8_A 110 GDEVITVAAGFPTTVNPTIQNGLIPVFVDVD-----IPTYNVNASLIEAAVSDKTKAIMIAHT---LGNLF---DLAEVR 178 (437) T ss_dssp TCEEEECSSSCHHHHHHHHHTTCEEEECCEE-----TTTTEECGGGHHHHCCTTEEEEEEECG---GGCCC---CHHHHH T ss_pred CCEEEECCCCHHHHHHHHHHCCCEEEEECCC-----CCCCCCCHHHHHHHHCCCCCEEEEECC---CCCCC---CHHHHH T ss_conf 8999983974799999999859989997056-----663201099999872369838998437---77766---608899 Q ss_pred HHHHHCCCEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEECC--HHCCCCCCCCHHHHH-HHHHHHHHHHHHHH Q ss_conf 99863787578417502355-688876522332102678689985040--010463112114332-58999999987520 Q T0591 205 ALAARYGATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGPS--KTESLSGYRLGVAFG-SRAIIARMEKLQAI 280 (406) Q Consensus 205 ~~a~~~~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~GlRiG~~~~-~~~~i~~l~~~~~~ 280 (406) ++|+++|+.||+|-+++... |+|....+ ..+ +.++||. |.+...+ -|.++. ++++.+.++.++.. T Consensus 179 ~i~~~~~i~vIED~A~a~ga~~~g~~~G~-------~gd--~~~fSF~~~K~ittge--GG~i~tnd~~l~~~~~~lr~~ 247 (437) T 3bb8_A 179 RVADKYNLWLIEDCCDALGSTYDGKMAGT-------FGD--IGTVSFYPAKHITMGE--GGAVFTQSAELKSIIESFRDW 247 (437) T ss_dssp HHHHHHTCEEEEECTTCTTCEETTEETTS-------SSS--EEEEECSTTSSSCCSS--CEEEEESCHHHHHHHHHHHBT T ss_pred HHHHHCCCEEEECCHHHHCCEECCEECCC-------CCC--EEEEECCCCCCCCCCC--CCEEECCCHHHHHHHHHHHHH T ss_conf 99998597488033143077069986136-------766--3579676774245688--754643899999999999984 Q ss_pred CC---------------------------------------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 36---------------------------------------761245799999998565258999999999999999999 Q T0591 281 VS---------------------------------------LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHV 321 (406) Q Consensus 281 ~~---------------------------------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~ 321 (406) .. ...+.+....+..-| +.+.+..++.++..+.+.+. T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~~G~n~rmsei~Aaigl~QL----~rl~~~~~~Rr~~~~~y~~~ 323 (437) T 3bb8_A 248 GRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL----ERIEEFVEKRKANFKYLKDA 323 (437) T ss_dssp TBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHH T ss_conf 83533332222200011233444333688622689743852047699997580566----42038999999999999998 Q ss_pred HHHCCCCEEE-C-CCC---CEEEE-EECCC-CCCCHHHHHHHHHHHCCEEEEECCC--------CCC-----CC--C--- Q ss_conf 9727994553-5-887---30787-76688-7889899999999868918961610--------267-----99--9--- Q T0591 322 LRGCEGVFAR-T-PQA---GSYLF-PRLPK-LAVAPAEFVKILRLQAGVVVTPGTE--------FSP-----HT--A--- 376 (406) Q Consensus 322 L~~~~g~~~~-~-p~g---g~~~w-~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~--------Fg~-----~~--~--- 376 (406) |.+.++.... . +.+ .++.+ +.++. ...+..++...| .++||-+.+... |.. .+ + T Consensus 324 l~~~~~~~~l~~~~~~~~~~~~~f~i~l~~~~~~~Rd~l~~~L-~~~gI~t~~~y~~~l~~~p~~~~~~~~~~~~lpna~ 402 (437) T 3bb8_A 324 LQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFL-DEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTD 402 (437) T ss_dssp GGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHH-HHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHH T ss_pred HCCCCCCEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH-HHCCCCEEEECCCHHHCCHHHHHCCCCCCCCCHHHH T ss_conf 3378884782566889864524789998356601199999999-977997455258713318888856988768898999 Q ss_pred ----CEEEEEE--CCCHHHHHHHHHHHHHHHH Q ss_conf ----8589985--0997999999999999999 Q T0591 377 ----DSVRLNF--SQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 377 ----~~iRis~--~~~~e~l~~al~rl~~~~~ 402 (406) ..+.|.+ ..++++++.-++.|++++. T Consensus 403 ~i~~~~l~LP~~~~Lt~~di~~Iv~~ik~f~~ 434 (437) T 3bb8_A 403 RIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437) T ss_dssp HHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT T ss_pred HHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 99839498638999999999999999999966 No 136 >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Probab=99.70 E-value=2.6e-14 Score=114.69 Aligned_cols=308 Identities=14% Similarity=0.075 Sum_probs=175.4 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCH-HHHHHHHHH--HHC-CHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCC Q ss_conf 9999999999864886788670788248727-899999999--720-010101310551389999982996999860446 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLIITPGTQG-ALFLAVAAT--VAR-GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYV 157 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~-~l~~~~~~l--~~p-Gd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~ 157 (406) +-..+..|+.+..|.+... ..++++|+++ .+.+++.++ ..| ++.|+++.-.+.+....+.++|++++.|+... T Consensus 117 le~~~v~~~~~l~g~~~~~--~~~~~~~~t~~~l~~~l~a~~~~~~~~~~ii~~~~aH~S~~ka~~~~G~~~v~v~~~~- 193 (501) T 3hl2_A 117 ITNSLVLDIIKLAGVHTVA--NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL- 193 (501) T ss_dssp HHHHHHHHHHHHTTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE- T ss_pred HHHHHHHHHHHHCCCCCCC--CEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEEEEC- T ss_conf 9999999999971999888--6576166259999999999998388999899977214899999998099468997312- Q ss_pred CCCCCCCCCCHHHHHHHHCC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC-CCCCCCCC Q ss_conf 66776667788999998502----54034215666432334437899999999863787578417502355-68887652 Q T0591 158 SADETRAGLDLTGLEEAFKA----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR-YAGASYTH 232 (406) Q Consensus 158 ~~~~~~~~~d~~~l~~~~~~----~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~-~~~~~~~~ 232 (406) +++.+.+|++++++++++ ++-+++.+.|+++.|.+-+ +++|+++|++||+++++|+||+-.. +.. . T Consensus 194 --~~~~~~~d~~~le~~i~~~~~~~~~~v~~t~~~~~~g~~d~---i~~I~~l~~~~~i~~~~d~a~g~~~~~~~----~ 264 (501) T 3hl2_A 194 --EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCM----H 264 (501) T ss_dssp --ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHH----H T ss_pred --CHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC---HHHHHHHHHHHCCEEEEECCCHHHHHHCC----C T ss_conf --50104638999999997613457179996689988866654---99999999996995999677577642015----5 Q ss_pred HHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 233210267868998504001046311211433-2589999999875203676124579999999856525899999999 Q T0591 233 LRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF-GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARH 311 (406) Q Consensus 233 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~-~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 311 (406) ..........--+++.|.+|.+..| .-.|++. .++++++.+.+.- .....+.+.-...+.++.-+.....+..+.. T Consensus 265 ~~~~~~~~g~~D~v~~s~hK~l~~p-~gg~il~~~~~~~~~~i~~~y--~g~~s~~p~~~~~asl~~~g~~~~~~~~~~~ 341 (501) T 3hl2_A 265 LIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMY--PGRASASPSLDVLITLLSLGSNGYKKLLKER 341 (501) T ss_dssp HHHHHHHHSCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTS--CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHCCCCCCCEEEECCCCCCCCC-CCCCEEECCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6332025688337980288646678-887655228867888787535--8987626779999999999998899999999 Q ss_pred HHHHHHHHHHHHHC---CCCEEEC-CCCCEEEEEECCC---C-CCCHHHHHHHHHHHCCEE----EEEC----------C Q ss_conf 99999999999727---9945535-8873078776688---7-889899999999868918----9616----------1 Q T0591 312 QAIRDELLHVLRGC---EGVFART-PQAGSYLFPRLPK---L-AVAPAEFVKILRLQAGVV----VTPG----------T 369 (406) Q Consensus 312 ~~~r~~l~~~L~~~---~g~~~~~-p~gg~~~w~~~~~---~-~~~~~~~~~~Ll~~~gV~----v~pG----------~ 369 (406) .+..+.+.+.|+++ .+..... |......-+.+.. . ..+..++.. .+.+.||. +.|. . T Consensus 342 ~~~~~~l~~~L~~i~~~~~~~~l~~~~n~~~~~i~~~~~~~~~~~d~~~l~~-~L~~~gi~g~~v~~~~~~~~i~~~~~~ 420 (501) T 3hl2_A 342 KEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGS-MLFTRQVSGARVVPLGSMQTVSGYTFR 420 (501) T ss_dssp HHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHH-HHHHTTCCSCEEECTTCCEEETTEEES T ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 9999999999999876428163357988526887313346555668899999-999759876311046765420221000 Q ss_pred CCCCCC----CCEEEEEE--CCCHHHHHHHHHHHHHHHHHHC Q ss_conf 026799----98589985--0997999999999999999856 Q T0591 370 EFSPHT----ADSVRLNF--SQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 370 ~Fg~~~----~~~iRis~--~~~~e~l~~al~rl~~~~~~~r 405 (406) .|+... ..|+.+.. +.+.+++++-+++|.+.+++++ T Consensus 421 ~~g~~~e~~~~~~i~~~~siG~~kediD~~v~~L~ki~~~~~ 462 (501) T 3hl2_A 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVR 462 (501) T ss_dssp STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 158655557776189980278999999999999999999998 No 137 >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Probab=99.69 E-value=3e-13 Score=107.50 Aligned_cols=341 Identities=14% Similarity=0.128 Sum_probs=199.2 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.|||..| ...+.+-.|.+.+++.+.+.......++ ....++. ..+++.+....... .+.+..+++++++... T Consensus 44 ~ylD~~~g~g~~~lGh~~p~i~~Ai~~q~~~~~~~~~~-~~~~~~~-~~l~~~l~~~~~~~---~~~v~~~~sGseA~e~ 118 (429) T 1s0a_A 44 RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG-GITHAPA-IELCRKLVAMTPQP---LECVFLADSGSVAVEV 118 (429) T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCS-SEECHHH-HHHHHHHHHHSCTT---CCEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHH-HHHHHHHHHHCCCC---CCEEEECCCCCCHHHH T ss_conf 99987627987751589799999999999755675467-7676688-99999986420467---6136631455410134 Q ss_pred HHHHHH----H---CCHHHHHHHCCCHHHHHH-HHHHC-------------CEEEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 999997----2---001010131055138999-99829-------------96999860446667766677889999985 Q T0591 117 AVAATV----A---RGDKVAIVQPDYFANRKL-VEFFE-------------GEMVPVQLDYVSADETRAGLDLTGLEEAF 175 (406) Q Consensus 117 ~~~~l~----~---pGd~Vl~~~P~y~~~~~~-~~~~g-------------~~~v~v~~~~~~~~~~~~~~d~~~l~~~~ 175 (406) ++.... . +...|+....+|++.... ....+ ......|.............+++.+++.+ T Consensus 119 A~k~ar~~~~~kg~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (429) T 1s0a_A 119 AMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLM 198 (429) T ss_dssp HHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHH T ss_pred HHHHHHHEEECCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 45554310000246776799997876366513333058852334555543334422357632222102567889888899 Q ss_pred C---CCCEEEECCCC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE Q ss_conf 0---25403421566--643233-44378999999998637875784175023556888765223321026786899850 Q T0591 176 K---AGARVFLFSNP--NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG 249 (406) Q Consensus 176 ~---~~~k~i~l~~P--~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S 249 (406) . .++.++++. | .+--|. ..+++.+++|.++|++||+++|.||++..|...|.-...-. ....|| +-+ T Consensus 199 ~~~~~~iaavivE-Pv~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~~~--~~v~PD----iv~ 271 (429) T 1s0a_A 199 AAHRHEIAAVIIE-PIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH--AEIAPD----ILC 271 (429) T ss_dssp HHHTTTEEEEEEC-SSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG--GTCCCS----EEE T ss_pred HHCCCCCCEEEEE-CEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECEEECCCCCCCCCCCCC--EEECCC----CEE T ss_conf 8658862215761-202277876789989999999999980978872011113550222354422--043464----000 Q ss_pred CCHHCCCCCCCCHHHHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 40010463112114332589999999875-----2036761245799999998565258999999999999999999972 Q T0591 250 PSKTESLSGYRLGVAFGSRAIIARMEKLQ-----AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG 324 (406) Q Consensus 250 ~SK~~~~~GlRiG~~~~~~~~i~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~ 324 (406) ++|.++-.+.-+|.+++.+++.+.+..-. ...+++.++++..++.+.|+..++ ++...+.+++-+.+.+.|++ T Consensus 272 ~gK~l~gG~~p~~~~~~~~~i~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~L~~l~~--~~~~~~~~~~g~~l~~~L~~ 349 (429) T 1s0a_A 272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAP 349 (429) T ss_dssp ECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGG T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHHH T ss_conf 0133321000232114579998523788876333068778887553553102532113--46531256899999999998 Q ss_pred C---CCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHH Q ss_conf 7---994553588730787766887889899999999868918961610267999858998--50997999999999999 Q T0591 325 C---EGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIVT 399 (406) Q Consensus 325 ~---~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~~ 399 (406) + +.+.-.... |++.-+.+.+ ..+...+...++ ++||.+.|. .+.+|++ +..+++++++++++|.+ T Consensus 350 l~~~~~v~~vrg~-Gl~~~i~~~~-~~~~~~l~~~~~-~~Gll~~~~-------gn~i~l~Ppl~it~~eid~~i~~l~~ 419 (429) T 1s0a_A 350 ARDAEMVADVRVL-GAIGVVETTH-PVNMAALQKFFV-EQGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVNR 419 (429) T ss_dssp GGGCTTEEEEEEE-TTEEEEEESS-CBCHHHHHHHHH-HTTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHH T ss_pred HCCCCCEEEEEEC-CCEEEEEECC-CCCHHHHHHHHH-HCCCEEEEC-------CCEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 5469966777212-6289999158-465999999999-789779854-------99999928847889999999999999 Q ss_pred HHHH Q ss_conf 9998 Q T0591 400 LVER 403 (406) Q Consensus 400 ~~~~ 403 (406) .+++ T Consensus 420 al~e 423 (429) T 1s0a_A 420 AVQD 423 (429) T ss_dssp HTSS T ss_pred HHHH T ss_conf 9976 No 138 >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Probab=99.68 E-value=6.7e-14 Score=111.88 Aligned_cols=320 Identities=12% Similarity=0.089 Sum_probs=185.5 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHC Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999720010101310 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQP 133 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P 133 (406) ++.+++++ .....+++++. ..++-+.+.+.+++.+|.+- ...|+++.|+|.++..++..++.+|+++++..- T Consensus 30 ~~~V~~Am----~~~~~~Hrs~e--f~~~~~~~r~~L~~ll~~~~--~~~v~~~gsgT~a~ea~~~~~~~~~~~~l~~~~ 101 (396) T 2ch1_A 30 SKRVLTAM----TNTVLSNFHAE--LFRTMDEVKDGLRYIFQTEN--RATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVN 101 (396) T ss_dssp CHHHHHHT----TSCCCCTTCHH--HHHHHHHHHHHHHHHHTCCC--SCEEEESSCHHHHHHHHHHHHCCTTCEEEEEES T ss_pred CHHHHHHH----CCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCC--CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 99999975----76778878999--99999999999999968999--719997684899999999974557870111013 Q ss_pred CCHHH--HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 55138--9999982996999860446667766677889999985-02540342156664323344378999999998637 Q T0591 134 DYFAN--RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY 210 (406) Q Consensus 134 ~y~~~--~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~ 210 (406) +..+. ...+..++...+.+.... +...+.++++... ..+++++.+++-+|.||...+.+ ++.++|+++ T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tg~~~~~~---~i~~~~~~~ 172 (396) T 2ch1_A 102 GIWAERAVEMSERYGADVRTIEGPP------DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLE---GVGQICHQH 172 (396) T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT------TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT---THHHHHHHT T ss_pred CHHHCCCHHHHHHHHCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHH---HHHHHHHCC T ss_conf 2011001245555320333345654------5663100000101368751046541112533232023---342112036 Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHC-------- Q ss_conf 8757841750235568887652233210267868998504001046-3112114332589999999875203-------- Q T0591 211 GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL-SGYRLGVAFGSRAIIARMEKLQAIV-------- 281 (406) Q Consensus 211 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~GlRiG~~~~~~~~i~~l~~~~~~~-------- 281 (406) ++++++|.+.+... .+..+.. ..--+++.|--|.++. +| +|+++..++..+.+....... T Consensus 173 ~~~~~vDavss~g~----~~id~~~-----~~iD~~~~s~~K~l~gp~G--~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (396) T 2ch1_A 173 DCLLIVDAVASLCG----VPFYMDK-----WEIDAVYTGAQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLL 241 (396) T ss_dssp TCEEEEECTTTBTT----BCCCTTT-----TTCCEEECCCC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHH T ss_pred CCEEEEECHHHHCC----CCCCHHC-----CCCEEEEECCCCCCCCCCE--EEEECCCHHHHHHHHHHCCCCCCCCCCHH T ss_conf 74499984243115----6500112-----4664899448765369987--98744567899876530245431125357 Q ss_pred -------------CC-C-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC----CCEEEEE Q ss_conf -------------67-6-1245799999998565-2589999999999999999999727994553588----7307877 Q T0591 282 -------------SL-R-AAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ----AGSYLFP 341 (406) Q Consensus 282 -------------~~-~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----gg~~~w~ 341 (406) .. . .....-.+....+... .........+.+.....+...+... +.....++ ...-+.+ T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~v~s~ 320 (396) T 2ch1_A 242 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGI 320 (396) T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEE T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHCCCEEEEE T ss_conf 676642011100123453246788888878889987643468999999888888765420-1233357746519848999 Q ss_pred ECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE-EC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 66887889899999999868918961610267999858998-50--997999999999999999856 Q T0591 342 RLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN-FS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 342 ~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-~~--~~~e~l~~al~rl~~~~~~~r 405 (406) .+|+ +.+..++...|++++||.+.+|.. ....+.|||+ ++ ++.|+++..++.|+++++... T Consensus 321 ~~p~-~~~~~~l~~~L~~~~gI~i~~G~~--~~~~~~~RIs~~g~~~~~edId~l~~al~e~L~~~~ 384 (396) T 2ch1_A 321 MIPK-GVDWWKVSQYAMNNFSLEVQGGLG--PTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396) T ss_dssp ECCT-TCCHHHHHHHHHHHHCBCCBCCCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC T ss_pred ECCC-CCCHHHHHHHHHHCCCEEEECCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 8999-999999999996159989968876--656988997077077999999999999999999829 No 139 >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Probab=99.68 E-value=1.8e-13 Score=108.91 Aligned_cols=340 Identities=14% Similarity=0.141 Sum_probs=185.6 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.||+..| ...+-+-.|.+.+++.+++.......+ .....+.+++.+....+. .+.|..+++++++... T Consensus 53 ~ylD~~~~~~~~~lGh~~p~v~~A~~~q~~~~~~~~~-----~~~~~~~la~~~~~~~~~----~~~v~f~~sGseAve~ 123 (427) T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA-----PCALENVLAEMVNDAVPS----IEMVRFVNSGTEACMA 123 (427) T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS-----CCHHHHHHHHHHHHHSTT----CSEEEEESSHHHHHHH T ss_pred EEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHCCCC----CCCCEECCCCHHHHHH T ss_conf 9997062089773168959999999999984576553-----045799999987640876----5544015870689999 Q ss_pred HHHHHH--HCCHHHHHHHCCCHHHHHHH-HHH-------CCEEE-EEEECCCCCCCCCCCCCHHHHHHHHCC---CCEEE Q ss_conf 999997--20010101310551389999-982-------99699-986044666776667788999998502---54034 Q T0591 117 AVAATV--ARGDKVAIVQPDYFANRKLV-EFF-------EGEMV-PVQLDYVSADETRAGLDLTGLEEAFKA---GARVF 182 (406) Q Consensus 117 ~~~~l~--~pGd~Vl~~~P~y~~~~~~~-~~~-------g~~~v-~v~~~~~~~~~~~~~~d~~~l~~~~~~---~~k~i 182 (406) ++..-. ...+.|+...-+|++..... ... +.... .+.............-|++++++.+++ +..++ T Consensus 124 Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~iaav 203 (427) T 3fq8_A 124 VLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGV 203 (427) T ss_dssp HHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 99999984089879999466557875122106886434689988898766666310367103999999997389976999 Q ss_pred ECCCC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCC Q ss_conf 21566--643233-443789999999986378757841750235568887652233210267868998504001046311 Q T0591 183 LFSNP--NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGY 259 (406) Q Consensus 183 ~l~~P--~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 259 (406) ++ .| .+ .|. ..+++.+++|.++|++||+++|.||++..+.. +..+ . .......|| + -.++|.++ .|+ T Consensus 204 i~-Epi~g~-~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~~~-~~~~-a-~~~~gi~PD--i--v~~gK~l~-gG~ 273 (427) T 3fq8_A 204 IL-EPIVGN-SGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRI-AYGG-V-QEKFGVTPD--L--TTLGKIIG-GGL 273 (427) T ss_dssp EE-CSSBCT-TSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT-BTTH-H-HHHTTCCCS--E--EEECGGGG-TTS T ss_pred EE-ECCCCC-CCCEECCHHHHHHHHHHHHHHCEEEEECCCCEECCC-CCCC-C-HHHCCCCHH--H--HHHHCCCC-CCC T ss_conf 98-023688-885638999999999999975406884466523133-2467-4-232388727--7--66410357-972 Q ss_pred CCHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 2114332589999999875---2036761245799999998565--2589999999999999999999727994553588 Q T0591 260 RLGVAFGSRAIIARMEKLQ---AIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 334 (406) Q Consensus 260 RiG~~~~~~~~i~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 334 (406) -+|.+++.+++.+.+.... ...+++.+++...++.+.|+.. +...++..+.-+..++.+.+...+.+.......- T Consensus 274 p~~av~~~~~i~~~~~~~~~~~~~~T~~~npl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~v~~v 353 (427) T 3fq8_A 274 PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQV 353 (427) T ss_dssp SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE T ss_pred EEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCC T ss_conf 14666421999976331467766678688834777777665554211466650114566667778777655997177551 Q ss_pred CCEE-EEE-ECC-C-----CCCCH---HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 7307-877-668-8-----78898---99999999868918961610267999858998509979999999999999998 Q T0591 335 AGSY-LFP-RLP-K-----LAVAP---AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 335 gg~~-~w~-~~~-~-----~~~~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~ 403 (406) ++++ ++. +-+ . ...+. ..+...|+ ++||.+.|+. + .. +-++++.++++|++.++.+++++++ T Consensus 354 g~m~gi~f~~~~v~~~~~~~~~d~~~~~~~~~~ll-~~GI~l~p~~-~----~~-~f~sl~~te~dId~~l~al~~al~~ 426 (427) T 3fq8_A 354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQ-F----EA-GFTSLAHTEEDIDATLAAARTVMSA 426 (427) T ss_dssp TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST-T----SC-EECCTTCCHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHH-HCCEEECCCC-C----CC-EECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 87689997246777978861264999999999999-7998988888-7----36-5277778899999999999999973 Q ss_pred H Q ss_conf 5 Q T0591 404 Y 404 (406) Q Consensus 404 ~ 404 (406) + T Consensus 427 L 427 (427) T 3fq8_A 427 L 427 (427) T ss_dssp C T ss_pred C T ss_conf 9 No 140 >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin B6, lyase; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* Probab=99.68 E-value=1e-12 Score=103.93 Aligned_cols=319 Identities=11% Similarity=0.071 Sum_probs=187.5 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCC------CCCEEEEECCCCHHHHHHHHHHHH---C-------C--------H Q ss_conf 88878888988999999999986488678------867078824872789999999972---0-------0--------1 Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVD------ARDGLIITPGTQGALFLAVAATVA---R-------G--------D 126 (406) Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~------~~~~I~it~G~~~~l~~~~~~l~~---p-------G--------d 126 (406) ..|..+.....+-+.+.+|+.+..|.+.. ....-++|+|++++...++.+--+ + | + T Consensus 103 ~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~gg~~tsGgs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~ 182 (486) T 1js3_A 103 FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEK 182 (486) T ss_dssp SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 76122704899999999999998569811104788998827886489999999999999877641444667544466676 Q ss_pred -HHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC------CEEEECCCCCCCCCCCCCHHH Q ss_conf -0101310551389999982996999860446667766677889999985025------403421566643233443789 Q T0591 127 -KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEE 199 (406) Q Consensus 127 -~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPTG~~~s~~~ 199 (406) .|++++=++++....+...|..++.||++ .++.+|+++|++.+.+. +-+|+.+.....||.+=+ T Consensus 183 ~vv~~s~~aH~Si~Kaa~~lGl~~~~V~~d------~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtT~~Ga~Dp--- 253 (486) T 1js3_A 183 LVAYASDQAHSSVERAGLIGGVKLKAIPSD------GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN--- 253 (486) T ss_dssp EEEEEETTCCHHHHHHHHHHTCEEEEECCC------TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC--- T ss_pred EEEEECHHHHHHHHHHHHHCCCCEEEECCC------CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--- T ss_conf 599965054699999998579982674138------88785999999999987636998669994058855311267--- Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHHHHHH-- Q ss_conf 9999999863787578417502355688876522332102678689985040010463112114332-5899999998-- Q T0591 200 IGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEK-- 276 (406) Q Consensus 200 l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~~l~~-- 276 (406) +++|.++|++|++|+.+|-+|+.+..--.....+.. ....-..| ..++.|.+..| .-+|++.. +++....... T Consensus 254 l~~I~~i~~~~~~wlHVDaA~Gg~~~~~~~~~~~~~--gi~~aDSi-t~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~ 329 (486) T 1js3_A 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLN--GVEFADSF-NFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLD 329 (486) T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGT--TGGGCSEE-EECHHHHSSCC-SSCEEEEESCHHHHHGGGC-- T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHC--CCCCCCEE-EECCCCCCCCC-CCCEEEEEECHHHHHHHHHCC T ss_conf 999999997527806860103421440801067646--99887241-02743226768-874278994278889987304 Q ss_pred ------HHH---------HCCCCHHHHHH-HHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCEE Q ss_conf ------752---------03676124579-999-999856525899999999999999999997279945535-887307 Q T0591 277 ------LQA---------IVSLRAAGYSQ-AVL-RGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART-PQAGSY 338 (406) Q Consensus 277 ------~~~---------~~~~~~~~~~q-~a~-~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~-p~gg~~ 338 (406) ... ..+...+.... ..+ ..+..-+..-.++...+.-+..+.+.+.|.+.+++++.. |+-+. T Consensus 330 ~~y~~~~~~~~~~~~~~~~~tl~~sR~~~al~lw~~l~~~G~~G~~~~i~~~~~~A~~l~~~l~~~~~fel~~~p~~~i- 408 (486) T 1js3_A 330 PVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGL- 408 (486) T ss_dssp ----------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSE- T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEE- T ss_conf 5764365335666777433566667523699999999986088999999999999999999985499969967995589- Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHCC Q ss_conf 8776688788989999999986891896161026799985899850---9979999999999999998569 Q T0591 339 LFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 339 ~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~l~~al~rl~~~~~~~ra 406 (406) +-.++.....-..++.+++.++.++.+.+.. + .+..++|+++. +++++++..++.|++..+++.| T Consensus 409 V~Fr~~~~d~~n~~l~~~l~~~g~~~~s~t~-~--~g~~~lR~~~~n~~t~~~dvd~l~~~i~~~a~~l~a 476 (486) T 1js3_A 409 VCFRLKGSDGLNEALLERINSARKIHLVPCR-L--RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486) T ss_dssp EEEEESSCHHHHHHHHHHHHHHTSCBCEEEE-E--TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEE-E--CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9998169808899999999850989996546-9--999899999689999999999999999999999985 No 141 >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Probab=99.68 E-value=3e-13 Score=107.48 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=106.6 Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHH-HHHHHHCCEEEEEEECCCCCCCCC-- Q ss_conf 99999864886788670788248727899999999720010101310551389-999982996999860446667766-- Q T0591 87 APRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANR-KLVEFFEGEMVPVQLDYVSADETR-- 163 (406) Q Consensus 87 a~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~-~~~~~~g~~~v~v~~~~~~~~~~~-- 163 (406) -+...+.||.+ .-.+++||++++...++.+++.|||.|++..-++-+.. ..+.+.|+.+++++..... ...- T Consensus 179 q~~aA~~fgAd----~t~FlvNGTS~~N~avi~al~~pGD~VLvdRn~HkSv~~~gl~LsGa~Pvyl~p~~n~-~G~i~~ 253 (730) T 1c4k_A 179 EKHAARVYNAD----KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP-YGFIGG 253 (730) T ss_dssp HHHHHHHTTCS----EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT-TCCEEE T ss_pred HHHHHHHHCCC----CEEEECCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCC T ss_conf 99999984999----1799897289999999996569879999836147999999999779976995883766-665079 Q ss_pred ---CCCCHHHHHHH---------HCC-CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCC Q ss_conf ---67788999998---------502-54034215666432334437899999999863787578417502-35568887 Q T0591 164 ---AGLDLTGLEEA---------FKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGAS 229 (406) Q Consensus 164 ---~~~d~~~l~~~---------~~~-~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~ 229 (406) ..++.+.+... ... ..+++++++|+ =.|.+++ +++|+++|++++..|++||+++ ++.|.+.. T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vvit~pt-Y~G~i~d---l~~I~~~~~~~~~~llvDeAhga~~~f~p~~ 329 (730) T 1c4k_A 254 IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMM 329 (730) T ss_dssp ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGG T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCC-CCCCCCC---HHHHHHHHHHCCCEEEEECHHCCCCCCCCCC T ss_conf 88288848987613201148877334887289997798-8754259---9999999986399799930111131058888 Q ss_pred CCCHHHHHCC---CCCCEEEEEECCHHCCCCCCCCHH Q ss_conf 6522332102---678689985040010463112114 Q T0591 230 YTHLRAEAAV---DAENVVTIMGPSKTESLSGYRLGV 263 (406) Q Consensus 230 ~~~~~~~~~~---~~~~~i~~~S~SK~~~~~GlRiG~ 263 (406) ..+....... +....+++.|++|++ +|+.-|. T Consensus 330 ~~~~~~~~~d~~~~~~~d~vvqS~HKtL--~altQ~S 364 (730) T 1c4k_A 330 RNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTS 364 (730) T ss_dssp GGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCE T ss_pred CCCHHHHCCCCCCCCCCCEEEEECCCCC--CCCCCEE T ss_conf 7414440022377666536997131025--5540006 No 142 >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA; HET: PLP; 1.90A {Sulfolobus tokodaii str} Probab=99.67 E-value=3.9e-13 Score=106.72 Aligned_cols=337 Identities=11% Similarity=0.114 Sum_probs=193.4 Q ss_pred CCEEECCC--CCCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH Q ss_conf 83341567--867887-88899999999998087888878888-988999999999986488678867078824872789 Q T0591 39 RPVDFSHG--DVDAHE-PTPGAFDLFSAGVQSGGVQAYTEYRG-DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 114 (406) Q Consensus 39 ~~i~ls~G--~pd~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l 114 (406) +.|||..| ...+.+ ..|.+.+++.+.+..... ....+ .-+.+..+++.+........ .+.++.+++++++. T Consensus 43 ~ylD~~~g~g~~~lGh~~hP~v~~a~~~ql~~~~~---~~~~~~~~~~~~~lae~L~~~~p~~~--~~~v~f~~sgsea~ 117 (419) T 2eo5_A 43 KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH---AAANDFYNIPQLELAKKLVTYSPGNF--QKKVFFSNSGTEAI 117 (419) T ss_dssp EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC---CSCSCSCCHHHHHHHHHHHHHSSCSS--CEEEEEESSHHHHH T ss_pred EEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEECCCCHHHH T ss_conf 99986611898854887889999999999975256---46564368799999999886478764--40799617848999 Q ss_pred HHHHHHHHHC-CHHHHHHHCCCHHHH-HHHHHHCC-------------EEEEEEE--CCCCCCCCCCCCCHHHHHH---- Q ss_conf 9999999720-010101310551389-99998299-------------6999860--4466677666778899999---- Q T0591 115 FLAVAATVAR-GDKVAIVQPDYFANR-KLVEFFEG-------------EMVPVQL--DYVSADETRAGLDLTGLEE---- 173 (406) Q Consensus 115 ~~~~~~l~~p-Gd~Vl~~~P~y~~~~-~~~~~~g~-------------~~v~v~~--~~~~~~~~~~~~d~~~l~~---- 173 (406) ..++..-... ...|+...-+|++.. ......|. ..+.+|. ............+.++... T Consensus 118 ~~a~k~a~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419) T 2eo5_A 118 EASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIE 197 (419) T ss_dssp HHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999755414662288867646865203443179633445678999997456788720002345665666765556777 Q ss_pred -------HH---CCCCEEEECCCC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf -------85---025403421566--643233-44378999999998637875784175023556888765223321026 Q T0591 174 -------AF---KAGARVFLFSNP--NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 240 (406) Q Consensus 174 -------~~---~~~~k~i~l~~P--~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 240 (406) .. .+++.++++ -| +| .|. ..+++.+++|.++|++||+++|.||++..|.-.|.-+.. .. .... T Consensus 198 ~~~~~~~~~~~~~~~iaavi~-EPi~g~-~G~~~~~~~fl~~l~~lc~~~gillI~DEV~tGfGRtG~~~~~-~~-~~v~ 273 (419) T 2eo5_A 198 FIEDYIFVNLVPPEEVAGIFF-EPIQGE-GGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAI-EN-FNTV 273 (419) T ss_dssp HHHHTHHHHTCCGGGEEEEEE-CSSBTT-TTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GG-GTCC T ss_pred HHHHHHHHHHCCCCCEEEEEE-CCCCCC-CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCC-CC-CCCC T ss_conf 667789886337886569997-886378-8875189999999999999849888624665468766677620-15-6754 Q ss_pred CCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 78689985040010463112114332589999999875203676124579999999856525899999999999999999 Q T0591 241 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~ 320 (406) ++ + -+++|.++..+.-+|.++..+++..... . ...+++.+.++..++.+.|+.. ++..++.+++-+++.+ T Consensus 274 PD--i--v~~gK~l~~g~~~~~~~~~~~~~~~~~~-~-~~~T~~g~p~~~aaa~a~L~~i----e~~~~~~~~~g~~l~~ 343 (419) T 2eo5_A 274 PD--V--ITLAKALGGGIMPIGATIFRKDLDFKPG-M-HSNTFGGNALACAIGSKVIDIV----KDLLPHVNEIGKIFAE 343 (419) T ss_dssp CS--E--EEECGGGGTTTSCCEEEEEEGGGCCC--------CCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH T ss_pred CC--C--EECCCCCCCCCCCEEEEEEHHHHCCCCC-C-CCCCCCCCCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHH T ss_conf 23--1--0013334577663378987223145776-6-5878899961057899999999----7122679999999999 Q ss_pred HHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHH Q ss_conf 99727994553588730787766887889899999999868918961610267999858998--5099799999999999 Q T0591 321 VLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAARRIV 398 (406) Q Consensus 321 ~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al~rl~ 398 (406) .|+++.+ .+. .. |+++-+.+.+. ....+++..++ ++||++.|. +++.+|++ +..+++++++++++|. T Consensus 344 ~L~~l~~-~vr-g~-Gl~~~i~~~~~-~~~~~~~~~~~-~~Gll~~~~------g~~~ir~~Ppl~it~~~id~~l~~l~ 412 (419) T 2eo5_A 344 ELQGLAD-DVR-GI-GLAWGLEYNEK-KVRDRIIGESF-KRGLLLLPA------GRSAIRVIPPLVISEEEAKQGLDILK 412 (419) T ss_dssp HHTTSSS-EEE-EE-TTEEEEECSCH-HHHHHHHHHHH-HTTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHH T ss_pred HHHHHHH-HHC-CC-CEEEEEEECCH-HHHHHHHHHHH-HCCCEEEEC------CCCEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9998776-636-00-36999995777-88999999999-789799646------99989997997889999999999999 Q ss_pred HHHHHHC Q ss_conf 9999856 Q T0591 399 TLVERYR 405 (406) Q Consensus 399 ~~~~~~r 405 (406) +.++++| T Consensus 413 ~~l~~v~ 419 (419) T 2eo5_A 413 KVIKVVK 419 (419) T ss_dssp HHHHHC- T ss_pred HHHHHHC T ss_conf 9999759 No 143 >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resistance, structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi NT} PDB: 3gwp_A* Probab=99.67 E-value=1.1e-14 Score=117.08 Aligned_cols=227 Identities=13% Similarity=0.047 Sum_probs=140.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEE--ECCCCHHHHHHHHHHHHCCHHHHHHHCC-CHHHHHHH-----------HHHCC Q ss_conf 9999999999864886788670788--2487278999999997200101013105-51389999-----------98299 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLII--TPGTQGALFLAVAATVARGDKVAIVQPD-YFANRKLV-----------EFFEG 147 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~i--t~G~~~~l~~~~~~l~~pGd~Vl~~~P~-y~~~~~~~-----------~~~g~ 147 (406) -|+++-+.+.+.+|. ++-++. .+.++.++..++.+++.|||+|++.+.. |..+.... ...|. T Consensus 74 ~r~~LE~~~A~l~G~----E~ALv~p~f~SGt~An~~aL~all~pGDeIl~~~~~~~~t~~~v~g~t~~~~~~~l~~~Gi 149 (427) T 3i16_A 74 GRDSLDAVYARVFNT----ESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI 149 (427) T ss_dssp HHHHHHHHHHHHHTC----SEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC T ss_pred CHHHHHHHHHHHHCC----CCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 389999999998499----5467306765099999999998379999899777876652053044688999988987391 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHC--CCEEEECCCCCC Q ss_conf 69998604466677666778899999850254034215666432---3344378999999998637--875784175023 Q T0591 148 EMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPA---GVVYSAEEIGQIAALAARY--GATVIADQLYSR 222 (406) Q Consensus 148 ~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPT---G~~~s~~~l~~i~~~a~~~--~~~ii~De~Y~~ 222 (406) +...++.. .+..+|++++++++++++|.+++.+++||. +.+++.+++++++++++++ ++++++|++|.. T Consensus 150 ~~~~vd~~------~~~~~D~~~l~~aI~~~tk~~~v~~~~s~~~~~~~~~~i~dI~~i~~~~k~~~~~i~v~vDn~~g~ 223 (427) T 3i16_A 150 NYKQVDLK------EDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGE 223 (427) T ss_dssp EEEECCCC------TTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTT T ss_pred EEEEECCC------CCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 79985798------766669999998725457769999706987667774249999999999985146866982487665 Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHH Q ss_conf 55688876522332102678689985040010463112-114332589999999875203676----1245799999998 Q T0591 223 LRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR-LGVAFGSRAIIARMEKLQAIVSLR----AAGYSQAVLRGWF 297 (406) Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR-iG~~~~~~~~i~~l~~~~~~~~~~----~~~~~q~a~~~~l 297 (406) +.....+ +. . ..| ++++|+||.++--|-- -|+++++++++++.+........+ .+..... .++ T Consensus 224 ~~~~~~P---l~-~-GaD----iv~~SltK~lgG~~a~~GG~IaG~kelIe~a~~~l~a~g~~~~~g~~~~~~r---~~~ 291 (427) T 3i16_A 224 FMDTKEP---TD-V-GAD----LIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVR---SMY 291 (427) T ss_dssp TSSSSCG---GG-G-TCS----EEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHH---HHH T ss_pred CCCCCCC---HH-H-CCC----EEEEEEHHCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHH T ss_conf 2224454---54-3-788----7999981016898675479997369999998777528876776423778999---996 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 56525899999999999999999997279945535 Q T0591 298 DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART 332 (406) Q Consensus 298 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 332 (406) .+-.....+.....+....+.+.|..+ |+.+.+ T Consensus 292 -qGl~~~p~~v~~a~k~a~~~a~~le~~-g~~~~P 324 (427) T 3i16_A 292 -QGLFLAPHISMEALKGAILCSRIMELA-GFEVMP 324 (427) T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEES T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC T ss_conf -572253899999999999999999976-998799 No 144 >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Probab=99.67 E-value=9.9e-14 Score=110.73 Aligned_cols=294 Identities=16% Similarity=0.140 Sum_probs=168.7 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHH--HHHHHHHHCCEEEEEEECCCCCCC Q ss_conf 999999998648867886707882487278999999997200101013105513--899999829969998604466677 Q T0591 84 DLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLDYVSADE 161 (406) Q Consensus 84 ~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~--~~~~~~~~g~~~v~v~~~~~~~~~ 161 (406) +.+.+.+.+..|.+-+ +..|++|+|+|+++..++..+..+++.+++..-.+.. ........+.....+.... . T Consensus 40 ~~~r~~l~~ll~~~~~-~~~v~~t~s~T~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 114 (366) T 1m32_A 40 EQIRQQLTALATASEG-YTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE----V 114 (366) T ss_dssp HHHHHHHHHHHCSSSS-EEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT----T T ss_pred HHHHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCC----C T ss_conf 9999999998098999-8899989879999999999877523521355426216689999998477753444577----8 Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCC Q ss_conf 66677889999985025403421566643233443789999999986378757841750235568887652233210267 Q T0591 162 TRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 241 (406) Q Consensus 162 ~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 241 (406) .....+.........++++++.++.-+|-||...+ ++++.++|+++|+++++|-+.+.-. .+..+.. . T Consensus 115 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---v~~i~~~~~~~g~~~~vDa~qs~G~----~~~d~~~-----~ 182 (366) T 1m32_A 115 ARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGG----IPMDIAA-----L 182 (366) T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTT----SCCCTTT-----T T ss_pred CCCCHHHHHHHHHCCCCCEEEEEECEECHHCEEEE---HHHHHHHHHCCCCEEEEECCCCCCC----CCEEEEC-----C T ss_conf 77770267888606988159999650331035341---1134443313697068863124576----3201100-----1 Q ss_pred CCEEEEEECCHHC-CCCCCCCHHHHHHHHHHHHHHH------------------HHHHCCCCHHHHHHHHHHHHHHCC-- Q ss_conf 8689985040010-4631121143325899999998------------------752036761245799999998565-- Q T0591 242 ENVVTIMGPSKTE-SLSGYRLGVAFGSRAIIARMEK------------------LQAIVSLRAAGYSQAVLRGWFDEA-- 300 (406) Q Consensus 242 ~~~i~~~S~SK~~-~~~GlRiG~~~~~~~~i~~l~~------------------~~~~~~~~~~~~~q~a~~~~l~~~-- 300 (406) .--+++.|..|.+ +-+| +|++...++..+.... ........++...-.+....+... T Consensus 183 ~~D~~~~~~~K~l~gP~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~ 260 (366) T 1m32_A 183 HIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK 260 (366) T ss_dssp TCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHCCCCCCCCCC--EEEEHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 000211221567789998--886130499998440568986631122220122356765676742677899999999998 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC----CCEEEEEECCC-CCCCHHHHHHHHHHHCCEEEEECCCCCCCC Q ss_conf 2589999999999999999999727994553588----73078776688-788989999999986891896161026799 Q T0591 301 PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ----AGSYLFPRLPK-LAVAPAEFVKILRLQAGVVVTPGTEFSPHT 375 (406) Q Consensus 301 ~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----gg~~~w~~~~~-~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~ 375 (406) +.......++.+...+.+.+.+... |.....+. .+. +-+.+|+ ...+..++...| .+.||.+.+|... . T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~s~~v-~~~~~p~~~~~~~~~~~~~L-~~~giiv~~G~~~---~ 334 (366) T 1m32_A 261 EGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPII-TAFYSPEDPQYRFSEFYRRL-KEQGFVIYPGKVS---Q 334 (366) T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSE-EEEECCCCTTCCHHHHHHHH-HHTTEECEECCCS---S T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHCCCCE-EEEECCCCCCCCHHHHHHHH-HHCCEEEECCCCC---C T ss_conf 4359999999999998888788715-986357835539967-99989998887899999999-9789099789868---8 Q ss_pred CCEEEEEE-C-CCHHHHHHHHHHHHHHHH Q ss_conf 98589985-0-997999999999999999 Q T0591 376 ADSVRLNF-S-QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 376 ~~~iRis~-~-~~~e~l~~al~rl~~~~~ 402 (406) .+.+|+++ . .++++++..++.|++.+. T Consensus 335 ~~~~Ris~~g~~~~~di~~~~~al~~~L~ 363 (366) T 1m32_A 335 SDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366) T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHHHCT T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHC T ss_conf 99899837888999999999999999844 No 145 >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, csgid, cytoplasm, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Probab=99.67 E-value=1.4e-13 Score=109.61 Aligned_cols=341 Identities=14% Similarity=0.123 Sum_probs=189.4 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.+||..| ...+.+-.|.+.+++.+++.....+. .+ .......++..... .. ..+.++.+++++++... T Consensus 56 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~----~~~~~~~~~~~~~~-~~---~~~~v~f~~sGseA~e~ 126 (434) T 3l44_A 56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYG-TP----TALEVKFAKMLKEA-MP---ALDKVRFVNSGTEAVMT 126 (434) T ss_dssp EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCS-SC----CHHHHHHHHHHHHH-CT---TCSEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCC-CC----CHHHHHHHHHHHHH-CC---CCEEEEECCCCCHHHHH T ss_conf 999856589871234795999999999997388546-77----25799999999752-66---43046633884089999 Q ss_pred HHHHHHH-C-CHHHHHHHCCCHHHHHHHH-HHCCEEEE--EEECC------CCCCCCCCCCCHHHHHHHHCC---CCEEE Q ss_conf 9999972-0-0101013105513899999-82996999--86044------666776667788999998502---54034 Q T0591 117 AVAATVA-R-GDKVAIVQPDYFANRKLVE-FFEGEMVP--VQLDY------VSADETRAGLDLTGLEEAFKA---GARVF 182 (406) Q Consensus 117 ~~~~l~~-p-Gd~Vl~~~P~y~~~~~~~~-~~g~~~v~--v~~~~------~~~~~~~~~~d~~~l~~~~~~---~~k~i 182 (406) +++..-. . ...|+...-+|++...... ..+..... .|... .........-+++.+++.+++ ++.++ T Consensus 127 AlklAr~~t~r~~vi~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~iaav 206 (434) T 3l44_A 127 TIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAI 206 (434) T ss_dssp HHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEE T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 99999885299969999788668877575503798765799986799876566554677454999999998479974799 Q ss_pred ECCCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCC Q ss_conf 21566-643233-4437899999999863787578417502355688876522332102678689985040010463112 Q T0591 183 LFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR 260 (406) Q Consensus 183 ~l~~P-~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 260 (406) ++ -| ..-.|. ..+++.+++|.++|++||+++|.||++..+.. +.-+.. . .....|| | -+++|.++ .|+- T Consensus 207 ii-EPi~g~~G~~~p~~~yl~~lr~lc~~~gilLI~DEV~tG~~~-g~~~~~-~-~~gv~PD--i--v~~gK~lg-gG~p 277 (434) T 3l44_A 207 LV-EPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF-MYGGAQ-D-LLGVTPD--L--TALGKVIG-GGLP 277 (434) T ss_dssp EE-CSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTS-SSSCHH-H-HHTCCCS--E--EEEEGGGG-TTSS T ss_pred EE-CCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCCCCH-H-HCCCCCH--H--HEECCCCC-CCCC T ss_conf 96-864266995889899999999999862977998657312344-355545-5-3288833--4--30103567-8763 Q ss_pred CHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCC Q ss_conf 114332589999999875---203676124579999999856--5258999999999999999999972799-4553588 Q T0591 261 LGVAFGSRAIIARMEKLQ---AIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDELLHVLRGCEG-VFARTPQ 334 (406) Q Consensus 261 iG~~~~~~~~i~~l~~~~---~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~g-~~~~~p~ 334 (406) +|.+++.+++.+.+.... ...+++.+.++..++.+.|+. .+...+...+.-+..++.+.+.+.+.+. +.... - T Consensus 278 ~~av~~~~~i~~~~~~~~~~~~~sT~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~v~~~~-~ 356 (434) T 3l44_A 278 IGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNR-L 356 (434) T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-E T ss_pred CEEEEEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-C T ss_conf 111445299999861268874668999870666899999999971678999999999999999999987799889972-4 Q ss_pred CCEEEEEECCCCCCC--------H---HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 730787766887889--------8---99999999868918961610267999858998509979999999999999998 Q T0591 335 AGSYLFPRLPKLAVA--------P---AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 335 gg~~~w~~~~~~~~~--------~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~ 403 (406) +|++...-..+...+ . ..|...++ ++||.+.|+ +..-++++...++|+++++++.|.+.+++ T Consensus 357 ~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l-~~Gv~~~p~------~~~~~~is~~~t~eeid~~~~~l~~al~~ 429 (434) T 3l44_A 357 KGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML-QEGVNLAPS------KYEAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434) T ss_dssp TTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH-HTTEECCSS------TTCCEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHH-HCCEEECCC------CCCCEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 87789998057767878761365999999999999-799398268------98425588888299999999999999999 Q ss_pred HC Q ss_conf 56 Q T0591 404 YR 405 (406) Q Consensus 404 ~r 405 (406) ++ T Consensus 430 l~ 431 (434) T 3l44_A 430 LA 431 (434) T ss_dssp HH T ss_pred HH T ss_conf 97 No 146 >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Probab=99.67 E-value=3e-13 Score=107.47 Aligned_cols=338 Identities=13% Similarity=0.064 Sum_probs=195.5 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CEEEEECCCCHHHHHHHHHHHH---C--- Q ss_conf 8889999999999808788887888898899999999998648867886--7078824872789999999972---0--- Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDAR--DGLIITPGTQGALFLAVAATVA---R--- 124 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~--~~I~it~G~~~~l~~~~~~l~~---p--- 124 (406) +.|.+-+.+...+.. ....+....+..++-+.+.+|+.+..|.+.... ..=.+|+|+++++.+++.+..+ + T Consensus 68 ~~~~a~~~~~~~~~~-n~~~~~~~p~~~~lE~~~~~~la~l~g~p~~~~~~~~G~~t~Ggs~a~l~a~~aar~~~~~~~~ 146 (502) T 3hbx_A 68 MEPECDKLIMSSINK-NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502) T ss_dssp CCHHHHHHHHHTTTC-BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999998526-8888420677999999999999998688943257975577452799999999999999999876 Q ss_pred --C-----HHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf --0-----101013105513899999829969998604466677666778899999850254034215666432334437 Q T0591 125 --G-----DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 125 --G-----d~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) | -.|++++-.+.+....++.+|.+++.|+++ ++++.+|+++|++++.+++.+++++.++|+||.+-+. T Consensus 147 ~~g~~~~~~~i~~s~~aH~s~~kaa~~~Gi~~~~V~~~-----~~~~~~D~~~L~~~i~~~t~~v~~~~~tt~tg~~d~i 221 (502) T 3hbx_A 147 AEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-----EGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDV 221 (502) T ss_dssp HTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-----TTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCH T ss_pred HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEC-----CCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCH T ss_conf 22788778479975887779999999728961899878-----9887318999999851587269986466077543439 Q ss_pred HHHHHHHHHH---HHCCCEEEECCCCCCCC--CCCCCCCCHHHHHCCCCCCE-EEEEECCHHCCCCCCCCHHHHH-HHHH Q ss_conf 8999999998---63787578417502355--68887652233210267868-9985040010463112114332-5899 Q T0591 198 EEIGQIAALA---ARYGATVIADQLYSRLR--YAGASYTHLRAEAAVDAENV-VTIMGPSKTESLSGYRLGVAFG-SRAI 270 (406) Q Consensus 198 ~~l~~i~~~a---~~~~~~ii~De~Y~~l~--~~~~~~~~~~~~~~~~~~~~-i~~~S~SK~~~~~GlRiG~~~~-~~~~ 270 (406) +++.+|++.. ..+++++.+|-+|..+. |........ ...+++ ....+..|.+..| .-+|++.. ++.. T Consensus 222 ~~I~~i~~~~~~~~~~d~~~HvDaA~~g~~~~~~~~~~~~~-----~~~~~~dSi~~~~HK~~~~p-~g~g~~~~r~~~~ 295 (502) T 3hbx_A 222 KLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-----FRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKED 295 (502) T ss_dssp HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-----TTSTTEEEEEEETTTTTCCC-SSCEEEEESSGGG T ss_pred HHHHHHHHHHCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHH-----CCCCCCCEEEECCCCCCCCC-CCEEEEEEECHHH T ss_conf 99999999957543553221241321353124460022443-----47888776864653226888-7858999977566 Q ss_pred HHHHHHHH-HH-------CCCCHHH-HHHH-HHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CC-CE Q ss_conf 99999875-20-------3676124-5799-999998-565258999999999999999999972799455358-87-30 Q T0591 271 IARMEKLQ-AI-------VSLRAAG-YSQA-VLRGWF-DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-QA-GS 337 (406) Q Consensus 271 i~~l~~~~-~~-------~~~~~~~-~~q~-a~~~~l-~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~g-g~ 337 (406) ........ .+ .+...+. .... .+...+ .-+..-+++..++...+.+.+.+.|.+++++++..+ .+ +. T Consensus 296 l~~~~~~~~~y~~~~~~~~~~~~sr~~~~~~~~~~~l~~lG~~G~~~~~~~~~~~A~yl~~~L~~~~~~el~~~p~~~~i 375 (502) T 3hbx_A 296 LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPL 375 (502) T ss_dssp SCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEE T ss_conf 02223346775678777635677775466999999999957599999999999999999999974899599827998408 Q ss_pred EEEEECC-CCCCCHHHHHHHHHHHCCEEEEECCCCCCCC--CCEEEEEEC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 7877668-8788989999999986891896161026799--985899850--997999999999999999856 Q T0591 338 YLFPRLP-KLAVAPAEFVKILRLQAGVVVTPGTEFSPHT--ADSVRLNFS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 338 ~~w~~~~-~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~--~~~iRis~~--~~~e~l~~al~rl~~~~~~~r 405 (406) .. .+++ ..+.+..+++.+| .++|..+ |...|-+.+ ...+|+.+. .+.+++++-++-|++.+++++ T Consensus 376 V~-F~~~~~~~~~~~dia~~L-~~~G~~~-~~~~~pp~~~~~~~lrv~~~~~~t~~~id~fv~dl~~i~~el~ 445 (502) T 3hbx_A 376 VA-FSLKDSSCHTEFEISDML-RRYGWIV-PAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD 445 (502) T ss_dssp EE-EEESSCSSCCHHHHHHHH-HTTTCBC-CEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH T ss_pred EE-EECCCCCCCCHHHHHHHH-HHCCCEE-ECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99-974799887899999999-9859874-1577898645635788882189999999999999999999999 No 147 >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Probab=99.67 E-value=8.7e-15 Score=117.87 Aligned_cols=347 Identities=15% Similarity=0.125 Sum_probs=182.3 Q ss_pred CEEECCC--CCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 3341567--86788788899999999998087--8888788889889999999999864886788670788248727899 Q T0591 40 PVDFSHG--DVDAHEPTPGAFDLFSAGVQSGG--VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 40 ~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) .|||..| ...+.+-.|.+.+++.+.+.... ........-.......+++.+.+..+-+. -+.++.+++++++.. T Consensus 56 ylD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~v~f~~SGsEAve 133 (449) T 2cjg_A 56 YLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA--LPHLFFVEGGALAVE 133 (449) T ss_dssp EEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT--CCEEEEESSHHHHHH T ss_pred EEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEECCCCCCHHH T ss_conf 888553188755067989999999999999999870567752023999999999998648866--686996378870788 Q ss_pred HHHHHH---HHC-C----------HHHHHHHCCCHHHHHHHH-HHC-------------CEEEEEEECCCCCCCC----C Q ss_conf 999999---720-0----------101013105513899999-829-------------9699986044666776----6 Q T0591 116 LAVAAT---VAR-G----------DKVAIVQPDYFANRKLVE-FFE-------------GEMVPVQLDYVSADET----R 163 (406) Q Consensus 116 ~~~~~l---~~p-G----------d~Vl~~~P~y~~~~~~~~-~~g-------------~~~v~v~~~~~~~~~~----~ 163 (406) .+++.- .+. + -.|+...-+|++...... ..+ ...++.|......+.. . T Consensus 134 ~AlKlAr~~t~~~~~~~~~~~~~~~~ii~~~gsyHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 213 (449) T 2cjg_A 134 NALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAAL 213 (449) T ss_dssp HHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 99999988874036655567666758999247515765631104578865445656655676554333222222103344 Q ss_pred CCCCHHHHHHHHC---CCCEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHC Q ss_conf 6778899999850---25403421566--643233443789999999986378757841750235568887652233210 Q T0591 164 AGLDLTGLEEAFK---AGARVFLFSNP--NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAA 238 (406) Q Consensus 164 ~~~d~~~l~~~~~---~~~k~i~l~~P--~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 238 (406) ..-+++++++.+. +++.++++ .| ++--+...+++.++++.++|++||+++|.||++..|...|..+..-. .. T Consensus 214 ~~~~l~~l~~~l~~~~~~iAAvi~-EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfgrtG~~~~~~~--~~ 290 (449) T 2cjg_A 214 EAEALRQARAAFETRPHDIACFVA-EPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQ--LD 290 (449) T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEE-CSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHH--HT T ss_pred HHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEHHCCCCCCCCCCCCCCCCC--CC T ss_conf 566777766666417875468994-034555544430677777899999876145003115432334665442123--44 Q ss_pred CCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH Q ss_conf 26786899850400104631121143325899999998752036761245799999998565--2589999999999999 Q T0591 239 VDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRD 316 (406) Q Consensus 239 ~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~ 316 (406) ..|| + -+++|.++..+.-+|.++................+++.+.++..++.+.++.. +...+...+.-+..++ T Consensus 291 v~PD--i--v~~gK~l~~G~~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~~~~~~~~~~~~~~g~~l~~ 366 (449) T 2cjg_A 291 VAPD--I--VAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRA 366 (449) T ss_dssp CCCS--E--EEECGGGSSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH T ss_pred CCCC--H--HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 3552--5--65531024442012456666665403677432233344432222203332100000257789999999999 Q ss_pred HHHHHHHHCCC-CEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHH Q ss_conf 99999972799-4553588730787766887889899999999868918961610267999858998--50997999999 Q T0591 317 ELLHVLRGCEG-VFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAA 393 (406) Q Consensus 317 ~l~~~L~~~~g-~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~a 393 (406) .+.+...+.+. +.-.... |+++-+.++.. ....+++..++ ++||++.|+ +.+.+|++ ++.++++++++ T Consensus 367 ~L~~l~~~~p~~v~~vrG~-Gl~~~ie~~~~-~~~~~~~~~~~-~~Gl~~~~~------g~~~ir~~Ppl~it~~~id~~ 437 (449) T 2cjg_A 367 RLDELAADFPAVVLDPRGR-GLMCAFSLPTT-ADRDELIRQLW-QRAVIVLPA------GADTVRFRPPLTVSTAEIDAA 437 (449) T ss_dssp HHHHHHHHSTTTSEEEEEE-TTEEEEECSSH-HHHHHHHHHHH-HTTEECEEE------TTTEEEECCCTTCCHHHHHHH T ss_pred HHHHHHHHCCCCEEEEECC-CEEEEEEECCC-CCHHHHHHHHH-HCCCEEEEC------CCCEEEEECCCCCCHHHHHHH T ss_conf 9999985688834776304-57999993783-02999999999-789489116------999899969847899999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999985 Q T0591 394 ARRIVTLVERY 404 (406) Q Consensus 394 l~rl~~~~~~~ 404 (406) +++|.+.++.. T Consensus 438 l~~l~~al~~v 448 (449) T 2cjg_A 438 IAAVRSALPVV 448 (449) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999986 No 148 >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'- phosphate, hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Probab=99.66 E-value=2.5e-14 Score=114.78 Aligned_cols=334 Identities=16% Similarity=0.133 Sum_probs=179.0 Q ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC Q ss_conf 037898334156786788788899999999998087888---87888898899999999998648867886707882487 Q T0591 34 APIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA---YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGT 110 (406) Q Consensus 34 ~~~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~---Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~ 110 (406) .+.....+-|..+... .++..+.+++.+.+.+..... +.......++-+.+.+.+.+..|. +| ++|++|.|+ T Consensus 23 F~~~~~~~YLd~as~~--~~p~~v~~a~~~~l~~~~~n~~~~~~~~~~~~~~~e~aR~~ia~ll~a--~~-~ei~~~~~~ 97 (416) T 1qz9_A 23 FALPEGVIYLDGNSLG--ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA--RD-GEVVVTDTT 97 (416) T ss_dssp BCCCTTCEECCTTTSC--CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC--CT-TSEEECSCH T ss_pred CCCCCCCEECCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CC-CCEEEECCC T ss_conf 8999999985685004--367999999999999986245756555133899999999999998197--97-588997585 Q ss_pred CHHHHHHHHHH------HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 27899999999------720010101310551389999982996999860446667766677889999985025403421 Q T0591 111 QGALFLAVAAT------VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF 184 (406) Q Consensus 111 ~~~l~~~~~~l------~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l 184 (406) |++++.++..+ ..+|+.|++..-.++.........+.++..++.+ .....+++.++++++++|+++.+ T Consensus 98 T~~~~~~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~T~lV~v 171 (416) T 1qz9_A 98 SINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT------LRLVDSPEELPQAIDQDTAVVML 171 (416) T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE------EEEESSGGGHHHHCSTTEEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEECCCCC------CCCCCCHHHHHHHCCCCCEEEEE T ss_conf 278777766678764046899779996443015679999710223202211------34568999999746888359999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCC-CHH Q ss_conf 5666432334437899999999863787578417502355688876522332102678689985040010463112-114 Q T0591 185 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR-LGV 263 (406) Q Consensus 185 ~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR-iG~ 263 (406) +.-+|-||.+++ +++|+++|+++++++++|-+..- |..+..+.... . -+++.|.+|.+..+ .. +|+ T Consensus 172 ~~v~n~tG~~~p---i~~i~~~~~~~~~~~~vDa~q~~----g~~~~d~~~~~---~--d~~~~s~~K~~~~~-~g~~g~ 238 (416) T 1qz9_A 172 THVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQAG---A--DYAIGCTYKYLNGG-PGSQAF 238 (416) T ss_dssp ESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHHT---C--SEEEECSSSTTCCC-TTCCCE T ss_pred EEECCCCCCEEC---HHHHHHHHHHCCCEEEEECCCCC----CCCCCCCCCCC---C--CEEEECCCCCCCCC-CCEEEE T ss_conf 752488774616---99999886205742898513320----12454332448---8--67750233533679-955999 Q ss_pred HHHHHHHHHHHHHH-----------------------HHHCCCCHHHHHHHHH---HHHHH-CCCHHHHHHHHHHHHHHH Q ss_conf 33258999999987-----------------------5203676124579999---99985-652589999999999999 Q T0591 264 AFGSRAIIARMEKL-----------------------QAIVSLRAAGYSQAVL---RGWFD-EAPGWMEDRIARHQAIRD 316 (406) Q Consensus 264 ~~~~~~~i~~l~~~-----------------------~~~~~~~~~~~~q~a~---~~~l~-~~~~~~~~~~~~~~~~r~ 316 (406) +...+.+.+..... ................ ...+. .+...++........... T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (416) T 1qz9_A 239 VWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFI 318 (416) T ss_dssp EEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH T ss_pred EEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 99747877327787776788776521222210013402331158307899987767899874019999999999999999 Q ss_pred HHHHHHHHCCCCEEECCC-----CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHH Q ss_conf 999999727994553588-----73078776688788989999999986891896161026799985899850---9979 Q T0591 317 ELLHVLRGCEGVFARTPQ-----AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHE 388 (406) Q Consensus 317 ~l~~~L~~~~g~~~~~p~-----gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e 388 (406) .+.+.+....++....|. ++. +-+..+ ++.++.+.| .++||.+. + ..++.||+|++ ++++ T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~r~~~-vs~~~~----~~~~v~~~L-~~~gI~~~----~--r~~~~iRvS~~h~ynt~~ 386 (416) T 1qz9_A 319 ELVEQRCAAHELTLVTPREHAKRGSH-VSFEHP----EGYAVIQAL-IDRGVIGD----Y--REPRIMRFGFTPLYTTFT 386 (416) T ss_dssp HHHHHHHTTSCCEECSCSSGGGBCSE-EEEECT----THHHHHHHH-HTTTEECE----E--ETTTEEEEECCTTTCCHH T ss_pred HHHHHHCCCCCEEEECCCCCCCCEEE-EEECCC----CHHHHHHHH-HHCCCEEE----C--CCCCEEEEECCCCCCCHH T ss_conf 99974125788256258873322469-998379----999999999-87898973----2--699879997997789999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999998 Q T0591 389 AAVAAARRIVTLVER 403 (406) Q Consensus 389 ~l~~al~rl~~~~~~ 403 (406) +++..++.|++++++ T Consensus 387 dId~~i~~L~~~l~~ 401 (416) T 1qz9_A 387 EVWDAVQILGEILDR 401 (416) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999970 No 149 >3hvy_A Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog; NP_348457.1; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Probab=99.66 E-value=7.6e-15 Score=118.30 Aligned_cols=230 Identities=11% Similarity=0.021 Sum_probs=136.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEE-E-ECCCCHHHHHHHHHHHHCCHHHHHHH-CCCHHHHHHH-----------H Q ss_conf 8988999999999986488678867078-8-24872789999999972001010131-0551389999-----------9 Q T0591 78 GDLGIRDLLAPRLAAFTGAPVDARDGLI-I-TPGTQGALFLAVAATVARGDKVAIVQ-PDYFANRKLV-----------E 143 (406) Q Consensus 78 G~~~Lr~aia~~~~~~~g~~~~~~~~I~-i-t~G~~~~l~~~~~~l~~pGd~Vl~~~-P~y~~~~~~~-----------~ 143 (406) |.|.+.+.. .+.+|.+ +-.+ + ++.+++|+..++.+++.|||+|++.. +.|......+ . T Consensus 75 Gnptle~l~----A~l~g~E----~Alv~~~f~SGtaAI~~aLlalLrPGDeIL~~~g~~Ydtl~~v~G~t~~~~~~~L~ 146 (427) T 3hvy_A 75 GRDSLDRVY----ANIFNTE----SAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLR 146 (427) T ss_dssp HHHHHHHHH----HHHHTCS----EEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTG T ss_pred CCHHHHHHH----HHHHCCC----CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHH T ss_conf 998999999----9985626----87033686588999999999975799989991488775420230456677763688 Q ss_pred HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHC--CCEEEECC Q ss_conf 8299699986044666776667788999998502540342156664323---344378999999998637--87578417 Q T0591 144 FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAG---VVYSAEEIGQIAALAARY--GATVIADQ 218 (406) Q Consensus 144 ~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG---~~~s~~~l~~i~~~a~~~--~~~ii~De 218 (406) .+|.+...++. .+...|++++++++++++|..++..++||.. -.++..++++++++++++ ++++++|+ T Consensus 147 ~~GI~~~~vd~-------~d~~~d~~~i~~ai~~~tkt~lV~~e~~~~~~~~p~~~i~dI~~i~~~ak~~~~~viv~vDN 219 (427) T 3hvy_A 147 EYGVKYKMVDL-------KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDN 219 (427) T ss_dssp GGTCEEEECCC-------BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEEC T ss_pred HCCEEEEECCC-------CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 70917774598-------87344399999861656774999957888777786377999999999999856898899716 Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 50235568887652233210267868998504001046311-21143325899999998752036761245799999998 Q T0591 219 LYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-RLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWF 297 (406) Q Consensus 219 ~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l 297 (406) +|..+.....+ + ... .| ++++|++|.++-.|- --|+++++++++++.+........+.+...-.....-+ T Consensus 220 t~~~p~~~~eP---l-~~G-AD----iV~~SltK~lgGh~d~~GG~IvG~kelIe~~~~rl~~~G~g~~~g~~~~~lRgl 290 (427) T 3hvy_A 220 CYGEFVEEKEP---T-DVG-AD----IIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSL 290 (427) T ss_dssp TTCTTTSSSCG---G-GGT-CS----EEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHH T ss_pred CCCCHHHCCCC---H-HHC-CC----EEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 76541104686---2-207-95----899973104788877647999828999999999974898677862489998787 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 56525899999999999999999997279945535 Q T0591 298 DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART 332 (406) Q Consensus 298 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~ 332 (406) ....-..++....-.+....+.+.|..+ |+.+.+ T Consensus 291 ~tl~~r~~~~~~nA~k~A~flA~~~e~~-g~~v~P 324 (427) T 3hvy_A 291 YEGLFMAPHVTIEAVKGAVFCARIMELA-GFDVLP 324 (427) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEES T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC T ss_conf 5526448999999999999999999975-981489 No 150 >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} Probab=99.66 E-value=3.4e-13 Score=107.09 Aligned_cols=337 Identities=17% Similarity=0.104 Sum_probs=201.1 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC---C---CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 833415678678878889999999999808788887888---8---9889999999999864886788670788248727 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR---G---DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~---G---~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .-|+|-..+ ...+|.+.+++...+...-.-|||-.+ | ..++-+...+..++.+|... -+|=.-+| +. T Consensus 33 ~~l~LiaSE---N~~S~~v~~a~gS~l~nkYaeG~pg~ryy~G~~~iD~iE~la~~ra~~lF~a~~---anvqp~SG-s~ 105 (425) T 3ecd_A 33 SQVELIASE---NIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH---ANVQPHSG-AQ 105 (425) T ss_dssp HSEECCTTC---CCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE---EECCCSSH-HH T ss_pred CCCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCH-HH T ss_conf 687486378---867999999856842264668899963658874399999999999998549975---36766855-99 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHHH---H--HHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCC Q ss_conf 8999999997200101013105513899---9--99829969998604466677666778899999850-2540342156 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANRK---L--VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSN 186 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~~---~--~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~ 186 (406) +...++.+++.|||+|+..++...+|.. . +...+.+.++++++ .+.+.+|.+++++..+ .++|+|++.. T Consensus 106 An~av~~all~pGD~il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~~-----~~~~~IDyd~~~~~a~~~kPklIi~G~ 180 (425) T 3ecd_A 106 ANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS-----RDTMLIDYDQVEALAQQHKPSLIIAGF 180 (425) T ss_dssp HHHHHHHHHCCTTCEEEEECC------------------CEEEEECCC-----TTTSSCCHHHHHHHHHHHCCSEEEEEC T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEC-----CCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 999999985699998998553458875756666654217887885452-----466750199999998651998799676 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH Q ss_conf 66432334437899999999863787578417502-35568887652233210267868998504001046311211433 Q T0591 187 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 265 (406) Q Consensus 187 P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~ 265 (406) -..|- .+ +.+++.++|.+.|.+++.|-++- .|+-.|.-+.++.. .+ |+.+|..|+| +|-|-|.+. T Consensus 181 S~y~r--~~---d~~~~reIad~vga~l~~D~aH~~GLIa~g~~pnPl~~-----aD--vvt~tTHKTL--rGPrgGiIl 246 (425) T 3ecd_A 181 SAYPR--KL---DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH-----AH--VVTSTTHKTL--RGPRGGFVL 246 (425) T ss_dssp SCCCS--CC---CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-----CS--EEEEESSGGG--CCCSCEEEE T ss_pred CCCCC--CC---CHHHHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCC-----CC--EEECCCCCCC--CCCCCEEEE T ss_conf 25766--35---79999977886396786034557777525678992002-----40--5865245456--788842898 Q ss_pred HH-HHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEEEE Q ss_conf 25-89999999875203676124579999-999856-5258999999999999999999972799455358-87307877 Q T0591 266 GS-RAIIARMEKLQAIVSLRAAGYSQAVL-RGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-QAGSYLFP 341 (406) Q Consensus 266 ~~-~~~i~~l~~~~~~~~~~~~~~~q~a~-~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~gg~~~w~ 341 (406) .. +++.+++....-....+.+...+.++ +..+.+ .....++..++.-++.+.|.+.|.+. |+.+... .-.-.+|+ T Consensus 247 ~~~~~~~~kI~~avfPg~qggph~~~iAa~aval~Ea~~~~f~~Ya~qVv~NAkaLa~~L~~~-G~~vv~ggTdnH~vlv 325 (425) T 3ecd_A 247 TNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLV 325 (425) T ss_dssp ESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEE T ss_pred ECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCEEEE T ss_conf 467789999865519654567126679999999999708889999999999999999887518-9279717987656999 Q ss_pred ECCCCCCCHHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEE------CCCHHHHHHHHHHHHHHHHH Q ss_conf 6688788989999999986891896----16102679998589985------09979999999999999998 Q T0591 342 RLPKLAVAPAEFVKILRLQAGVVVT----PGTEFSPHTADSVRLNF------SQDHEAAVAAARRIVTLVER 403 (406) Q Consensus 342 ~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~------~~~~e~l~~al~rl~~~~~~ 403 (406) ++...+.+..+. +..+++.||.+. |++.=.+..+.-+||.. +..++++++-.+-|.++++. T Consensus 326 d~~~~~~~g~~a-~~~Le~~gI~vNkn~iP~d~~~~~~~sGiRlGT~a~TtrG~~e~dm~~iA~lI~~~l~~ 396 (425) T 3ecd_A 326 DLRPKGLKGAQV-EQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425) T ss_dssp ECGGGTCCHHHH-HHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH T ss_pred EECCCCCCHHHH-HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 706778879999-99987489897578588999889999852657789984899889999999999999997 No 151 >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Probab=99.66 E-value=2.2e-12 Score=101.57 Aligned_cols=349 Identities=14% Similarity=0.092 Sum_probs=192.3 Q ss_pred CCC-CEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 898-3341567--8678878889999999999808788887888898899999999998648867886707882487278 Q T0591 37 EGR-PVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 37 ~~~-~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) +|+ .||+..| ...+.+-.|.+.+++.+.+..... .......+.+..+|+.+....... -+.++.+++++++ T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~~~la~~L~~~~~~~---~~~v~f~~sGseA 114 (433) T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH---LFSEMLSRPVVDLATRLANITPPG---LDRALLLSTGAES 114 (433) T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC---CCTTCCCHHHHHHHHHHHHHSCTT---CCEEEEESCHHHH T ss_pred CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCH T ss_conf 9699998552888663168989999999999863455---445411689999999788747844---1314530465520 Q ss_pred HHHHHHHHH-HCC-HHHHHHHCCCHHHHHHH-HHHCC-----------EEEEEEECCCCCCCCC---CCCC---HHHHHH Q ss_conf 999999997-200-10101310551389999-98299-----------6999860446667766---6778---899999 Q T0591 114 LFLAVAATV-ARG-DKVAIVQPDYFANRKLV-EFFEG-----------EMVPVQLDYVSADETR---AGLD---LTGLEE 173 (406) Q Consensus 114 l~~~~~~l~-~pG-d~Vl~~~P~y~~~~~~~-~~~g~-----------~~v~v~~~~~~~~~~~---~~~d---~~~l~~ 173 (406) ...+++..- -.| ..|+...-.|++..... ...+. ....++.......... .... .++++. T Consensus 115 ~e~AlklAr~~t~r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (433) T 1zod_A 115 NEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFD 194 (433) T ss_dssp HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 89999999984299622203433454100000346762102457865674122322344665333443114677889888 Q ss_pred HH----CCCCEEEECCCCC-CCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 85----0254034215666-43233-443789999999986378757841750235568887652233210267868998 Q T0591 174 AF----KAGARVFLFSNPN-NPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTI 247 (406) Q Consensus 174 ~~----~~~~k~i~l~~P~-NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~ 247 (406) .+ ..++.++++ -|= .--|. ..+++.+++|.++|++||+++|.||++..|.-.|.-+.. .. ....|| + T Consensus 195 ~~~~~~~~~iaavi~-EPi~g~gG~~~~~~~yl~~l~~lc~~~gillI~DEV~tGfGRtG~~~a~-~~-~gv~PD----i 267 (433) T 1zod_A 195 LIDRQSSGNLAAFIA-EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC-QR-DGVTPD----I 267 (433) T ss_dssp HHHHHCCSCEEEEEE-CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH-HH-HTCCCS----E T ss_pred HHHHHCCCCCCCEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC-CC-CCCCCC----H T ss_conf 877514665443244-4322678876799999999999997648579843511267566687655-56-898876----3 Q ss_pred EECCHHCCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5040010463112114332589999999875--203676124579999999856--525899999999999999999997 Q T0591 248 MGPSKTESLSGYRLGVAFGSRAIIARMEKLQ--AIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDELLHVLR 323 (406) Q Consensus 248 ~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~--~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~ 323 (406) ..++|.++ .|+-++.+++.++++..+..-. ...+.+.+.+...++.+.++. .+...++....-+..++.+.+.+. T Consensus 268 ~~~gK~l~-~G~p~~av~~~~~~~~~~~~~~~~~~~T~~~~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~l~~~~~ 346 (433) T 1zod_A 268 LTLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLME 346 (433) T ss_dssp EEECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 10344345-66532204553102223454333346776777406678777657652003556677765568888766665 Q ss_pred HCCCCEEECCCCCEEEEEECC---CC----CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHH Q ss_conf 279945535887307877668---87----889899999999868918961610267999858998--509979999999 Q T0591 324 GCEGVFARTPQAGSYLFPRLP---KL----AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FSQDHEAAVAAA 394 (406) Q Consensus 324 ~~~g~~~~~p~gg~~~w~~~~---~~----~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~l~~al 394 (406) +.+.+.-....|.++- +.+. .. ......+.+.++ +.|+... ........+.+|++ +..+++++++++ T Consensus 347 ~~~~v~~vrG~Glm~~-ie~~~d~~~~~~~~~~~~~l~~~~~-~~gl~~~--~~~~~~~~~~i~~~PpL~it~~eid~~~ 422 (433) T 1zod_A 347 RFDCIGDVRGRGLLLG-VEIVKDRRTKEPADGLGAKITRECM-NLGLSMN--IVQLPGMGGVFRIAPPLTVSEDEIDLGL 422 (433) T ss_dssp HCTTEEEEEEETTEEE-EEEEEETTTTEECTTHHHHHHHHHH-HTTEECC--EECCTTSCCEEEECCCTTCCHHHHHHHH T ss_pred CCCCEEEEEECCEEEE-EEEECCCCCCCCCHHHHHHHHHHHH-HHCCHHC--EEEECCCCCEEEEECCCCCCHHHHHHHH T ss_conf 0897478872141899-9992377656723899999999999-8472107--0640689998999799788999999999 Q ss_pred HHHHHHHHH Q ss_conf 999999998 Q T0591 395 RRIVTLVER 403 (406) Q Consensus 395 ~rl~~~~~~ 403 (406) ++|.+.+++ T Consensus 423 ~~l~~al~~ 431 (433) T 1zod_A 423 SLLGQAIER 431 (433) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999998 No 152 >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Probab=99.65 E-value=4.3e-13 Score=106.42 Aligned_cols=215 Identities=18% Similarity=0.155 Sum_probs=137.8 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCC Q ss_conf 9999999999864886788670788248727899999999720010101310551389999----982996999860446 Q T0591 82 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYV 157 (406) Q Consensus 82 Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~ 157 (406) |.+.+|.. .|. + ..++++.+..|+..++.++++|||+|++..+.|..-...+ ...|.++..+. T Consensus 3 LE~~la~L----eg~----~-~a~~~sSGmaAi~~~l~~ll~~Gd~vv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d---- 69 (331) T 1pff_A 3 LEGKIAKL----EHA----E-ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID---- 69 (331) T ss_dssp HHHHHHHH----HTC----S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC---- T ss_pred HHHHHHHH----HCC----C-EEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEC---- T ss_conf 89999998----599----8-6999667899999999997299999999289801699999999876486899955---- Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCHHHH Q ss_conf 6677666778899999850254034215666432334437899999999-863787578417502355688876522332 Q T0591 158 SADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAAL-AARYGATVIADQLYSRLRYAGASYTHLRAE 236 (406) Q Consensus 158 ~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~-a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 236 (406) .-|++.+++++++++|++++.+|.||+-.+.. ++.++++ ++++++++|+|+.+....+- .++ .. T Consensus 70 -------~~d~~~~~~~i~~~t~~i~~Es~~np~l~v~d---l~~~~~~~a~~~~~~~vvDnT~atp~~~----~Pl-~~ 134 (331) T 1pff_A 70 -------MAVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----NPL-DL 134 (331) T ss_dssp -------TTSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC----CGG-GG T ss_pred -------CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCC---HHHHHHHHHCCCCCEEEEECEEECCCCC----CCC-CC T ss_conf -------68979999986138718984267787763121---4666666540378489985749875314----665-24 Q ss_pred HCCCCCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 1026786899850400104631-1211433258999999987--520367612457999999985652589999999999 Q T0591 237 AAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKL--QAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQA 313 (406) Q Consensus 237 ~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 313 (406) + .| |+++|.||.++-.+ .=.|.++++++........ +.......+... +..++. +-+-+..+.++..+ T Consensus 135 G-aD----ivv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~d---a~ll~r-gl~Tl~~Rm~~~~~ 205 (331) T 1pff_A 135 G-VD----IVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHD---AWLITR-GTLTLDMRVKRAAE 205 (331) T ss_dssp T-CS----EEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHH---HHHHHH-HHHHHHHHHHHHHH T ss_pred C-CC----EEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHC-CCHHHHHHHHHHHH T ss_conf 7-87----798604356448987767743333056899986420103688689899---999974-55288899999999 Q ss_pred HHHHHHHHHHHCCCCE-EECC Q ss_conf 9999999997279945-5358 Q T0591 314 IRDELLHVLRGCEGVF-ARTP 333 (406) Q Consensus 314 ~r~~l~~~L~~~~g~~-~~~p 333 (406) +...+.+.|++.+.+. +..| T Consensus 206 nA~~lA~~L~~hp~V~~V~yP 226 (331) T 1pff_A 206 NAQKVAEFLHEHKAVKKVYYP 226 (331) T ss_dssp HHHHHHHHHHHCTTCCCEECT T ss_pred HHHHHHHHHHHCCCEEECCCC T ss_conf 999999978758984341168 No 153 >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} Probab=99.65 E-value=4.6e-13 Score=106.23 Aligned_cols=162 Identities=13% Similarity=0.080 Sum_probs=110.3 Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCC----CC Q ss_conf 99999864886788670788248727899999999720010101310551389999982996999860446667----76 Q T0591 87 APRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSAD----ET 162 (406) Q Consensus 87 a~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~----~~ 162 (406) -+...+.+|.+ .-.+++||++.+...++.+++.|||.|+++.-|+-+....+.+.|++++++........ -. T Consensus 211 E~~aA~~fGAd----~t~fvvNGTS~~N~avi~a~~~pGD~VlvdRn~HkSv~~gl~lsGA~Pvyl~p~~n~~giig~i~ 286 (755) T 2vyc_A 211 EKYAARVFGAD----RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIY 286 (755) T ss_dssp HHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCC T ss_pred HHHHHHHHCCC----CEEEECCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC T ss_conf 99999982999----17998787899999999973899898997773399999999987997999478445555637777 Q ss_pred CCCCCHHHHHHHHCCC----------CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCC Q ss_conf 6677889999985025----------4034215666432334437899999999863787578417502-3556888765 Q T0591 163 RAGLDLTGLEEAFKAG----------ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYT 231 (406) Q Consensus 163 ~~~~d~~~l~~~~~~~----------~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~ 231 (406) ...++.+.+++.+... ++++++++|+= .|.+++ +++|+++|++++..|++||+++ ++.|.+.-.. T Consensus 287 ~~~~~~e~i~~~I~~~p~~k~~~~~~~~~vvit~~TY-dG~~~d---l~~I~~l~~~~~~~LlvDEAhga~~~f~p~~~~ 362 (755) T 2vyc_A 287 PQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD 362 (755) T ss_dssp GGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCT-TSEEEC---HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTT T ss_pred CCCCCHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCC-CCCCCC---HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC T ss_conf 2438999999999858033444147872999957865-874169---999999998629959983332133434788730 Q ss_pred CHH---HHHCCCCCCEEEEEECCHHCCC Q ss_conf 223---3210267868998504001046 Q T0591 232 HLR---AEAAVDAENVVTIMGPSKTESL 256 (406) Q Consensus 232 ~~~---~~~~~~~~~~i~~~S~SK~~~~ 256 (406) +.. .....+....+++.|++|.++. T Consensus 363 ~~~~~g~~~~~~~~~~ivtqS~HK~L~a 390 (755) T 2vyc_A 363 HYAMRGEPGDHNGPTVFATHSTHKLLNA 390 (755) T ss_dssp SSSSCSCCCCCSSBEEEEEEETTTSSSC T ss_pred HHHCCCCCCCCCCCEEEEEEECCCCCCC T ss_conf 1102588531347704999856656656 No 154 >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Probab=99.65 E-value=9.1e-13 Score=104.22 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=140.9 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHH---- Q ss_conf 8888788889889999999999864886788670788248727899999999720010101310551389999982---- Q T0591 70 VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF---- 145 (406) Q Consensus 70 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~---- 145 (406) .+.|+-. |.|. .+++.+.+....|. ++ .++++++..++.. +..++.+||+|++....|......+... T Consensus 46 ~~~YsR~-~nPT-~~~lE~~la~LEg~----~~-a~~~sSGmAAi~~-~l~~l~~gd~iv~~~~~Yg~t~~~~~~~l~~~ 117 (393) T 1n8p_A 46 TYEYSRS-QNPN-RENLERAVAALENA----QY-GLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAH 117 (393) T ss_dssp SCCBTTT-CCHH-HHHHHHHHHHHTTC----SE-EEEESCHHHHHHH-HHHTSCSSCEEEEESSCCHHHHHHHHHTSTTT T ss_pred CEEEECC-CCHH-HHHHHHHHHHHHCC----CE-EEECCCHHHHHHH-HHHCCCCCCEEEEEECCCCCCHHHHHHHHHCC T ss_conf 7356489-9878-99999999998399----62-7753776789999-97325899979997045565213444444117 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH----CCCEEEECCCCC Q ss_conf 9969998604466677666778899999850254034215666432334437899999999863----787578417502 Q T0591 146 EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAAR----YGATVIADQLYS 221 (406) Q Consensus 146 g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~----~~~~ii~De~Y~ 221 (406) |.++..+ -.+.++++++++++||+|++-+|.||+..+.. +++|+++|++ +++++|+|+.+. T Consensus 118 gi~~~~~------------~~~~~~~~~~i~~~tkli~~EspsNP~l~v~D---i~~ia~~a~~~~~~~~i~lvVDNT~a 182 (393) T 1n8p_A 118 GVETSFT------------NDLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFL 182 (393) T ss_dssp CSCCEEE------------SSHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTT T ss_pred CEEEEEE------------ECCHHHHHHHHCCCCEEEEECCCCCCCCEECC---HHHHHHHHHHCCCCCCCEEEEECCCC T ss_conf 4499998------------35868999873778608992168995444233---46656554311235784699956544 Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 3556888765223321026786899850400104631-1211433-2589999999875203676124579999999856 Q T0591 222 RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAF-GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE 299 (406) Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~-~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 299 (406) --.+ ..++ ..+ .| |+++|++|.++-.| .=.|.++ .++++.+.++..+.......++.....+..-+ T Consensus 183 tP~~----~~Pl-~~G-aD----iVvhS~TKyi~GhsDvl~G~vv~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl-- 250 (393) T 1n8p_A 183 SPYI----SNPL-NFG-AD----IVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGL-- 250 (393) T ss_dssp HHHH----CCGG-GGT-CS----EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-- T ss_pred CCCC----CCCC-CCC-CC----EEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-- T ss_conf 6145----8742-128-98----9997155101688864264220564779999999987437879979999997368-- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 52589999999999999999999727 Q T0591 300 APGWMEDRIARHQAIRDELLHVLRGC 325 (406) Q Consensus 300 ~~~~~~~~~~~~~~~r~~l~~~L~~~ 325 (406) +-+..+.++..++...+.+.|... T Consensus 251 --~Tl~lR~~~~~~nA~~lA~~L~~~ 274 (393) T 1n8p_A 251 --KTLHLRVRQAALSANKIAEFLAAD 274 (393) T ss_dssp --TTHHHHHHHHHHHHHHHHHHHTSC T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHC T ss_conf --705689999999999999999856 No 155 >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Probab=99.63 E-value=9.9e-12 Score=97.18 Aligned_cols=322 Identities=10% Similarity=0.070 Sum_probs=181.0 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC------CCCEEEEECCCCHHHHHHHHHHHH----------C----- Q ss_conf 8087888878888988999999999986488678------867078824872789999999972----------0----- Q T0591 66 QSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVD------ARDGLIITPGTQGALFLAVAATVA----------R----- 124 (406) Q Consensus 66 ~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~------~~~~I~it~G~~~~l~~~~~~l~~----------p----- 124 (406) .+.....|..+.....+-+.+.+|+.+..|.+.+ +...-++|+|++++...++.+--+ + T Consensus 98 ~n~n~~~~~~sp~~t~~E~~v~~wl~~l~g~p~~~~~~~~~~~~g~~t~Ggs~anl~al~~AR~~~~~~~~~~~~~~~~~ 177 (475) T 3k40_A 98 IACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEH 177 (475) T ss_dssp HCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 36764242447632899999999999985697676356888777731678999999999999999878865318663222 Q ss_pred ---CH-HHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC----C--CEEEECCCCCCCCCCC Q ss_conf ---01-010131055138999998299699986044666776667788999998502----5--4034215666432334 Q T0591 125 ---GD-KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----G--ARVFLFSNPNNPAGVV 194 (406) Q Consensus 125 ---Gd-~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~----~--~k~i~l~~P~NPTG~~ 194 (406) +. .|++.+-++++....+...|.....++. .++.+|++.|++.+.+ + +-+++.+-..-.||.+ T Consensus 178 ~~~~~~vv~~S~~aH~Sv~Kaa~~lGi~~~~~~~-------~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~tGai 250 (475) T 3k40_A 178 TILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQS-------ENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAF 250 (475) T ss_dssp HHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECC-------BTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB T ss_pred CCCCCEEEEECHHHHHHHHHHHHHCCCCEEECCC-------CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC T ss_conf 4667669997333389999999867971450458-------887567899999999877469975377731587667543 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHH-HH Q ss_conf 437899999999863787578417502355688876522332102678689985040010463112114332-5899-99 Q T0591 195 YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAI-IA 272 (406) Q Consensus 195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~-i~ 272 (406) +.+.+|.++|++|++|+-+|-+|+.+..--.....+. .....-..| ...++|.+++| .=+|++.. ++.. .. T Consensus 251 ---D~l~~I~~i~~~~~~wlHVDaA~Gg~~~~~~~~r~~~--~gi~~aDSi-t~d~HK~l~~P-~~~~~~l~rd~~~~~~ 323 (475) T 3k40_A 251 ---DYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLM--KGIESADSF-NFNPHKWMLVN-FDCSAMWLKDPSWVVN 323 (475) T ss_dssp ---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGG--TTGGGCSEE-EECHHHHSSCC-SSCEEEEESSGGGC-- T ss_pred ---CCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHH--CCCCHHEEE-EECCCCCCCCC-CCCEEEEECCHHHHHH T ss_conf ---7599999999874864997023157776401014654--388611055-55630113567-6641567437888767 Q ss_pred HHHH----HH----------HHCCCCHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CC Q ss_conf 9998----75----------2036761245799--999998565258999999999999999999972799455358-87 Q T0591 273 RMEK----LQ----------AIVSLRAAGYSQA--VLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-QA 335 (406) Q Consensus 273 ~l~~----~~----------~~~~~~~~~~~q~--a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~g 335 (406) .+.. +. ...++..+..... ....+..-+..-.++...+..+..+.+.+.|.+.+++++..| +- T Consensus 324 ~~~~~~~Yl~~~~~~~~~~~~~~~~~~sR~~~al~lw~~l~~~G~~g~~~~i~~~~~~A~~l~~~l~~~~~fel~~~~~~ 403 (475) T 3k40_A 324 AFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINM 403 (475) T ss_dssp -------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBT T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCE T ss_conf 62267121065533566673334642365236899998874307688999999999999999999835999799679855 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHC Q ss_conf 3078776688788989999999986891896161026799985899850---997999999999999999856 Q T0591 336 GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 336 g~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~l~~al~rl~~~~~~~r 405 (406) +.-+ .++........++.++|.++-.+.+.+... .+..++|++++ +++++++..++.|.+..+++. T Consensus 404 ~iV~-Fr~~~~~~~n~~l~~~l~~~G~~~~s~t~~---~g~~~lR~~i~n~~t~~~did~~~~~i~~~a~~l~ 472 (475) T 3k40_A 404 GLVC-FRLKGSNERNEALLKRINGRGHIHLVPAKI---KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475) T ss_dssp TEEE-EEESSCHHHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH T ss_pred EEEE-EEECCCCHHHHHHHHHHHHCCCEEEEEEEE---CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7999-982698588999999998459899830259---99989999968999999999999999999999998 No 156 >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix K1} PDB: 2zsl_A* 2zsm_A* Probab=99.63 E-value=2.8e-13 Score=107.68 Aligned_cols=340 Identities=14% Similarity=0.111 Sum_probs=184.7 Q ss_pred CEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 3341567--86788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 40 PVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 40 ~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) .+|+..| ...+.+-.|.+.+++.+++.....+. ... ..- ........... .+.+.+..+++++++...+ T Consensus 58 ylD~~sg~~~~~lGh~~p~v~~Ai~~ql~~~~~~~--~~~--~~~-~~~~~~~~~~~----~~~~~v~f~~sGseAve~A 128 (434) T 2epj_A 58 IVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYG--APG--EAE-VLLAEKILGYV----KRGGMIRFVNSGTEATMTA 128 (434) T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCS--SCC--HHH-HHHHHHHHHHH----CTTCEEEEESSHHHHHHHH T ss_pred EEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC--CCC--HHH-HHHHHHHHHHC----CCCCEEEECCCCHHHHHHH T ss_conf 99867418866417896999999999985456767--863--689-99999754036----8644377427643899999 Q ss_pred HHHH-HHC-CHHHHHHHCCCHHHHHHHHHH-CCEE--EEEEECCCCC------CCCCCCCCHHHHHHHHCC---CCEEEE Q ss_conf 9999-720-010101310551389999982-9969--9986044666------776667788999998502---540342 Q T0591 118 VAAT-VAR-GDKVAIVQPDYFANRKLVEFF-EGEM--VPVQLDYVSA------DETRAGLDLTGLEEAFKA---GARVFL 183 (406) Q Consensus 118 ~~~l-~~p-Gd~Vl~~~P~y~~~~~~~~~~-g~~~--v~v~~~~~~~------~~~~~~~d~~~l~~~~~~---~~k~i~ 183 (406) +..- .-. ...|+...-+|++........ +-.. ...|...... ......-|+++|++.+++ ++.+++ T Consensus 129 iklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~iAavI 208 (434) T 2epj_A 129 IRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVI 208 (434) T ss_dssp HHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 99998630897799995777874144653157543346899877877666676405673419999999986799868999 Q ss_pred CCCCCCC-CCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCC Q ss_conf 1566643-233-44378999999998637875784175023556888765223321026786899850400104631121 Q T0591 184 FSNPNNP-AGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL 261 (406) Q Consensus 184 l~~P~NP-TG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 261 (406) + -|=-= .|. ..+++.+++|.++|++||+++|.||++..+. .|.... .. .....|| |+ +++|.++ .|.-+ T Consensus 209 ~-EPi~g~~G~~~p~~~yl~~l~~lc~~~gillI~DEV~tG~r-~G~~~~-~~-~~gv~PD--iv--~~gK~l~-gG~p~ 279 (434) T 2epj_A 209 V-EPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFR-LGLEGA-QG-YFNIEGD--II--VLGKIIG-GGFPV 279 (434) T ss_dssp E-CSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTT-SSTTHH-HH-HHTCCCS--EE--EEEGGGG-TTSSC T ss_pred E-EECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCE-ECCCCC-HH-HHCCCCC--HH--HHHHHCC-CCCCC T ss_conf 9-50303689526898999999999998698899865545740-036876-24-3098864--75--6535326-99751 Q ss_pred HHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCCC Q ss_conf 14332589999999875---2036761245799999998565--258999999999999999999972799-45535887 Q T0591 262 GVAFGSRAIIARMEKLQ---AIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEG-VFARTPQA 335 (406) Q Consensus 262 G~~~~~~~~i~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g-~~~~~p~g 335 (406) |.+++.+++.+.+..-. ...+++.++++..++.+.|+-. +..+++.++.-+..++.+.+.+.+... ..+....+ T Consensus 280 ~a~~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~~~ 359 (434) T 2epj_A 280 GAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVES 359 (434) T ss_dssp EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETT T ss_pred EEEEECHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 21455199998618788764235789984114778999999867189999999999999999999977699975702477 Q ss_pred --CEEEEEECCCC-----CCC---HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf --30787766887-----889---8999999998689189616102679998589985099799999999999999985 Q T0591 336 --GSYLFPRLPKL-----AVA---PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 336 --g~~~w~~~~~~-----~~~---~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) |+++-+++... ..+ ..+++..++ ++||.+.|+. ...++.++..+++++++++++|++.+++. T Consensus 360 ~~gl~~~~e~v~~~~~~~~~d~~~~~~~~~~~~-~~Gv~l~p~~------~~~~~p~l~~t~~~id~~~~~~~~~l~~v 431 (434) T 2epj_A 360 MMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPSN------LEAVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434) T ss_dssp EEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST------TSCEECCTTCSHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEECCCHHHHCCCCHHHHHHHHHHHH-HCCEEECCCC------CEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 257999766237867713577999999999999-7996887899------87897468888999999999999999998 No 157 >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Probab=99.62 E-value=2.1e-13 Score=108.59 Aligned_cols=342 Identities=14% Similarity=0.088 Sum_probs=192.7 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.||+..| ...+.+-.|.+.+++.+.+.....+.+ ....+..+++.+....+ . -+.++.+++++++... T Consensus 54 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-----~~~~~~~la~~l~~~~~-~---~~~v~f~~sGseAvE~ 124 (429) T 3k28_A 54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGA-----PTEIENKLAKLVIERVP-S---IEIVRMVNSGTEATMS 124 (429) T ss_dssp EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSS-----CCHHHHHHHHHHHHHST-T---CSEEEEESSHHHHHHH T ss_pred EEEEECCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHHCC-C---CCEEEECCCCHHHHHH T ss_conf 9998440787506787979999999999974676667-----60478999999986488-7---7669861884389999 Q ss_pred HHHHHH-HCC-HHHHHHHCCCHHHHHHH-HHHCC--EEEEEEECCCC------CCCCCCCCCHHHHHHHH---CCCCEEE Q ss_conf 999997-200-10101310551389999-98299--69998604466------67766677889999985---0254034 Q T0591 117 AVAATV-ARG-DKVAIVQPDYFANRKLV-EFFEG--EMVPVQLDYVS------ADETRAGLDLTGLEEAF---KAGARVF 182 (406) Q Consensus 117 ~~~~l~-~pG-d~Vl~~~P~y~~~~~~~-~~~g~--~~v~v~~~~~~------~~~~~~~~d~~~l~~~~---~~~~k~i 182 (406) ++..-- -.| ..|+....+|++..... ...+- ...+.|..... .......-+++.+++.. .+++.++ T Consensus 125 AlKlAr~~tgr~~il~~~~~yHG~t~~~~~~t~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaav 204 (429) T 3k28_A 125 ALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACV 204 (429) T ss_dssp HHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE T ss_conf 99999870389859999798179868899844576434699999999887577764301224877678998548864389 Q ss_pred ECCCC-CCCCC-CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCC Q ss_conf 21566-64323-34437899999999863787578417502355688876522332102678689985040010463112 Q T0591 183 LFSNP-NNPAG-VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR 260 (406) Q Consensus 183 ~l~~P-~NPTG-~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 260 (406) ++. | ..-.| ...+++.+++|.++|++||+++|.||++..+... .-+ ........|| |+ .++|.++ .|+- T Consensus 205 i~E-Pi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gr~-~~~--a~~~~~v~PD--iv--~~gK~lg-gG~p 275 (429) T 3k28_A 205 IVE-PVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVA-YNC--GQGYYGVTPD--LT--CLGKVIG-GGLP 275 (429) T ss_dssp EEC-SSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSS-TTH--HHHHHTCCCS--EE--EECGGGG-TTSC T ss_pred EEC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCC--CCCCCCCCCC--EE--EEEEECC-CCCC T ss_conf 977-313788865789899999999999829899981465445643-335--5101598986--68--8834515-8774 Q ss_pred CHHHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 11433258999999987---5203676124579999999856525-8999999999999999999972799455358873 Q T0591 261 LGVAFGSRAIIARMEKL---QAIVSLRAAGYSQAVLRGWFDEAPG-WMEDRIARHQAIRDELLHVLRGCEGVFARTPQAG 336 (406) Q Consensus 261 iG~~~~~~~~i~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg 336 (406) ++.+++.+++.+.+..- ....+++.+.+...++.+.|+..++ .+.+....-...++.+.+.+.+.+-+...... | T Consensus 276 ~~av~~~~ei~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~VrG~-G 354 (429) T 3k28_A 276 VGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRA-G 354 (429) T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-T T ss_pred CEEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-C T ss_conf 401445799999743247775357888786999999999999743426889999999999999999758997699624-6 Q ss_pred EEEEEECCCCCC---------CH---HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH Q ss_conf 078776688788---------98---999999998689189616102679998589985099799999999999999985 Q T0591 337 SYLFPRLPKLAV---------AP---AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 337 ~~~w~~~~~~~~---------~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~~~~ 404 (406) +++-+.+.+... +. ..++..++ ++||.+.|+. + ..+.++++.+++++++++++|.++++++ T Consensus 355 l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gv~l~p~~-~-----~~~~~~l~it~~~id~~~~~l~~al~~l 427 (429) T 3k28_A 355 SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ-F-----EGLFLSTVHSDADIEATIAAAEIAMSKL 427 (429) T ss_dssp TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST-T-----SCBCCCTTCCHHHHHHHHHHHHHHHHTC T ss_pred CEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHH-HCCEEECCCC-C-----EEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 2899998368777867760254999999999999-7998977888-7-----1076677787999999999999999985 Q ss_pred CC Q ss_conf 69 Q T0591 405 RA 406 (406) Q Consensus 405 ra 406 (406) || T Consensus 428 kA 429 (429) T 3k28_A 428 KA 429 (429) T ss_dssp C- T ss_pred CC T ss_conf 59 No 158 >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Probab=99.62 E-value=5.8e-12 Score=98.76 Aligned_cols=338 Identities=17% Similarity=0.162 Sum_probs=184.3 Q ss_pred CEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 3341567--86788788899999999998087888878888988999999999986488678867078824872789999 Q T0591 40 PVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 117 (406) Q Consensus 40 ~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~ 117 (406) .|||..| ...+.+-.|.+.+++.+++...... ... . ......++.+..... ..+.++.+++++++...+ T Consensus 59 ylD~~~g~~~~~lGh~~p~v~~A~~~ql~~~~~~--~~~--~-~~~~~~~~~~~~~~~----~~~~~~~~~sg~eA~~~A 129 (453) T 2cy8_A 59 YLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQY--AAS--H-PLEVRWAERIVAAFP----SIRKLRFTGSGTETTLLA 129 (453) T ss_dssp EEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSS--CSS--C-HHHHHHHHHHHHHCT----TCSEEEEESCHHHHHHHH T ss_pred EEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCC--C-CHHHHHHHHHHHHCC----CCHHHCCCCCCCCHHHHH T ss_conf 9983632887855689899999999999745674--545--3-202444555542001----110100133333111111 Q ss_pred HHHH-HHCC-HHHHHHHCCCHHHHHHHHH-HCCEEE------EEEECCCCCCCCCCCCCHHHHHHHHCC---CCEEEECC Q ss_conf 9999-7200-1010131055138999998-299699------986044666776667788999998502---54034215 Q T0591 118 VAAT-VARG-DKVAIVQPDYFANRKLVEF-FEGEMV------PVQLDYVSADETRAGLDLTGLEEAFKA---GARVFLFS 185 (406) Q Consensus 118 ~~~l-~~pG-d~Vl~~~P~y~~~~~~~~~-~g~~~v------~v~~~~~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~ 185 (406) +... ...| ..|+...-.|+++...... .+.... ..+.... ....-..-|++.+++.+.. ++.++++ T Consensus 130 ~~~ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~~iaavi~- 207 (453) T 2cy8_A 130 LRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTA-NTLLIRPDDIEGMREVFANHGSDIAAFIA- 207 (453) T ss_dssp HHHHHHHHCCCEEEEECC----------------------------CGG-GEEEECTTCHHHHHHHHHHHGGGEEEEEE- T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCCEEEEEE- T ss_conf 0101245431038743113467432100145776455777666674344-45455612179999999847898689999- Q ss_pred CCCCC-CC-CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHH Q ss_conf 66643-23-34437899999999863787578417502355688876522332102678689985040010463112114 Q T0591 186 NPNNP-AG-VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGV 263 (406) Q Consensus 186 ~P~NP-TG-~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~ 263 (406) -|-.. .| ...+++.+++|.++|++||+++|.||++..+...+ .+. .......|| | -+++|.++ .|+-+|. T Consensus 208 Epi~g~~G~~~p~~~~l~~lr~lc~~~~illI~DEV~tG~r~~~-~fa--~~~~~v~PD--i--vt~gK~lg-G~~P~~a 279 (453) T 2cy8_A 208 EPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGN-HGM--QALLDVQPD--L--TCLAKASA-GGLPGGI 279 (453) T ss_dssp CSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCT-THH--HHHHTCCCS--E--EEEEGGGG-TTSSCEE T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEE-CCC--CCCEEEEEC--C--CCCCCCCC-CCCCCCC T ss_conf 60344468522563100223323321152034200044303420-366--521047421--2--01334566-6432311 Q ss_pred HHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCC Q ss_conf 3325899999998-----752036761245799999998565--25899999999999999999997279-945535887 Q T0591 264 AFGSRAIIARMEK-----LQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCE-GVFARTPQA 335 (406) Q Consensus 264 ~~~~~~~i~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~-g~~~~~p~g 335 (406) +++.+++++.+.. +....+++.++++..++.+.|+.- +...++..+.-+..++.|.+...+.+ -+.+...-. T Consensus 280 v~~~~~i~~~~~~~~~~~~~h~~T~~g~p~~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~~~~g~~~ 359 (453) T 2cy8_A 280 LGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFS 359 (453) T ss_dssp EEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTT T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 13330244454330243443334543211120334444312101015677887548999999999987499706998778 Q ss_pred CEEEEEECCCC------------CCCHH----HHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH Q ss_conf 30787766887------------88989----999999986891896161026799985899850997999999999999 Q T0591 336 GSYLFPRLPKL------------AVAPA----EFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVT 399 (406) Q Consensus 336 g~~~w~~~~~~------------~~~~~----~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~ 399 (406) |+.++..++.. ...+. .+...++ +.||.+.|. +.+.+++..++++++++++++.+ T Consensus 360 G~gl~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~Gv~~~~~--------~~~~~s~~~teedId~~~~al~~ 430 (453) T 2cy8_A 360 GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGR--------GSVFLSAQHEREHVEHLVTTFDR 430 (453) T ss_dssp EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTT--------TEEECCTTCCHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH-HCCCEECCC--------CCEEEECCCCHHHHHHHHHHHHH T ss_conf 777885365345654433368773220999999999999-779288777--------88575089989999999999999 Q ss_pred HHHHHC Q ss_conf 999856 Q T0591 400 LVERYR 405 (406) Q Consensus 400 ~~~~~r 405 (406) ++++++ T Consensus 431 al~~l~ 436 (453) T 2cy8_A 431 VLDRLA 436 (453) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 159 >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* 2vmr_A* 2vms_A* 2vmt_A* 2vmu_A* 2vmq_A* ... Probab=99.62 E-value=3.4e-13 Score=107.11 Aligned_cols=335 Identities=15% Similarity=0.105 Sum_probs=204.4 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCCH--HHHHHHH-HHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 3341567867887888999999999980878888788---8898--8999999-99998648867886707882487278 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RGDL--GIRDLLA-PRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G~~--~Lr~aia-~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) -|+|-..+ ...+|.+.+++...+...-.-+|+.. .|.. +-.|.+| +..++.+|... -+|=..+| +.+ T Consensus 25 ~l~LiaSE---N~~S~~v~~a~~S~l~nkYaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~---anvqp~SG-s~A 97 (405) T 2vi8_A 25 KIELIASE---NFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH---ANVQPHSG-AQA 97 (405) T ss_dssp SEECCTTC---CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSH-HHH T ss_pred CCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCC-HHH T ss_conf 93587278---757899999855742476768899834337762499999999999999818985---55446763-788 Q ss_pred HHHHHHHHHHCCHHHHHHHCCCHHHHH-----HHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCC Q ss_conf 999999997200101013105513899-----999829969998604466677666778899999850-25403421566 Q T0591 114 LFLAVAATVARGDKVAIVQPDYFANRK-----LVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSNP 187 (406) Q Consensus 114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~-----~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~P 187 (406) ...++.++++|||+|+..++...+|.. .......+.++++++ ...+.+|.+++++..+ .++|+|++..- T Consensus 98 n~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d-----~~~~~iD~d~~~~~a~~~kPklIi~G~S 172 (405) T 2vi8_A 98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-----PETHVIDYDDVREKARLHRPKLIVAAAA 172 (405) T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC-----TTTCSBCHHHHHHHHHHHCCSEEEECCS T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC-----CCCCEECHHHHHHHHHHCCCCEEEECCC T ss_conf 99999986079987998415778733455545555457886765555-----4558362899999998439845763134 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH Q ss_conf 6432334437899999999863787578417502-355688876522332102678689985040010463112114332 Q T0591 188 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 266 (406) Q Consensus 188 ~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~ 266 (406) ..|- .-+++++.++|++.|.+++.|-++- .|+-.|.-+.++.. + | |+..|..|+| +|-|-|.+.. T Consensus 173 ~y~~-----~~d~~~~~eiad~vga~l~~D~sHi~GLIa~g~~~~Pl~~--a-d----vvt~sTHKTl--~GPrgGiI~~ 238 (405) T 2vi8_A 173 AYPR-----IIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY--A-H----FVTTTTHKTL--RGPRGGMILC 238 (405) T ss_dssp SCCS-----CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT--C-S----EEEEESSSTT--CCCSCEEEEE T ss_pred CCCC-----CCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCHHHH--H-C----CEECCCCCCC--CCCCCCEEEE T ss_conf 6888-----7789999999877296987103456665356643997876--1-5----2312125656--6888736885 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEEEEEC Q ss_conf 5899999998752036761245799999-99856-5258999999999999999999972799455358-8730787766 Q T0591 267 SRAIIARMEKLQAIVSLRAAGYSQAVLR-GWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-QAGSYLFPRL 343 (406) Q Consensus 267 ~~~~i~~l~~~~~~~~~~~~~~~q~a~~-~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~gg~~~w~~~ 343 (406) .+++.+.+.+.......+.+...+.++. ..+.+ .....++..++..++.+.|.+.|.+. |+.+... .-.-.+|+++ T Consensus 239 ~~~~~~~i~~avfPg~qg~~h~~~iaa~aval~ea~~~~~~~Ya~qvv~NA~aLa~~L~~~-G~~v~~ggTd~H~vlvdl 317 (405) T 2vi8_A 239 QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDL 317 (405) T ss_dssp CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEC T ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCCCEEEEEC T ss_conf 5346788886508776677415778999999999718689999999999999999999738-977971898774652002 Q ss_pred CCCCCCHHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEEC------CCHHHHHHHHHHHHHHHH Q ss_conf 88788989999999986891896----161026799985899850------997999999999999999 Q T0591 344 PKLAVAPAEFVKILRLQAGVVVT----PGTEFSPHTADSVRLNFS------QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 344 ~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~~------~~~e~l~~al~rl~~~~~ 402 (406) ...+.+..+. +++|++.||.+. |++.-.+..+.-+||... ..++++++-.+-|.++++ T Consensus 318 ~~~~~~g~~a-~~~Le~agI~vNkn~iP~d~~~~~~~sGiRiGT~~~T~rG~~e~dm~~iA~~I~~~l~ 385 (405) T 2vi8_A 318 RPQQLTGKTA-EKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405) T ss_dssp GGGTCCHHHH-HHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT T ss_pred CCCCCCHHHH-HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 3456739999-9999983928777858899999998872165688998489988999999999999995 No 160 >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} Probab=99.62 E-value=7.6e-13 Score=104.72 Aligned_cols=337 Identities=16% Similarity=0.067 Sum_probs=202.1 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCHH--HHHHHH-HHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 8334156786788788899999999998087888878---888988--999999-9999864886788670788248727 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE---YRGDLG--IRDLLA-PRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~--Lr~aia-~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .-|+|-..+ ...+|.+.+++...+...-..+|+- ..|... -.|.+| +..++.+|... -+|-..+| +. T Consensus 24 ~~l~LiaSE---N~~S~~v~~al~S~l~nkYaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~---anVqp~SG-s~ 96 (407) T 2dkj_A 24 EGLELIASE---NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW---ANVQPHSG-SQ 96 (407) T ss_dssp TSEECCTTC---CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSH-HH T ss_pred CCCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE---ECCCCCCC-HH T ss_conf 791587066---658999999861700153768899855556662699999999999999719973---33463233-17 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHH-----HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCC Q ss_conf 899999999720010101310551389-----9999829969998604466677666778899999850-2540342156 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANR-----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSN 186 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~-----~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~ 186 (406) +...++.++++|||+|+..++...+|. ..+.....+.+.++++ .+...+|.+++++..+ .++|+|++-. T Consensus 97 An~av~~all~pgd~il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~~-----~~~~~IDyd~~~~~a~~~kPklIi~G~ 171 (407) T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVR-----PDTELIDLEEVRRLALEHRPKVIVAGA 171 (407) T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCC-----TTTSSCCHHHHHHHHHHHCCSEEEECC T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC-----CCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 999999997389987874156677764446666655415421243666-----667744899999999863999898255 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH Q ss_conf 66432334437899999999863787578417502-35568887652233210267868998504001046311211433 Q T0591 187 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 265 (406) Q Consensus 187 P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~ 265 (406) -++| ..+ +.+++.++|++.|.+++.|-++- .|+-.|.-+.++. . .| |+.+|..|+| +|-|-|.+. T Consensus 172 S~y~--~~~---d~~~~reiad~vga~l~~D~sH~~GLIa~g~~~~Pl~--~-aD----vvt~sTHKTl--rGPrggiI~ 237 (407) T 2dkj_A 172 SAYP--RFW---DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP--Y-AH----VVTSTTHKTL--RGPRGGLIL 237 (407) T ss_dssp SSCC--SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT--T-CS----EEEEESSGGG--CCCSCEEEE T ss_pred CCCC--CCC---CHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCC--C-CC----EEEEECCCCC--CCCCCCCEE T ss_conf 4565--555---7899998763118578712232444420453688555--5-52----4885334335--688765013 Q ss_pred HH-HHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCEEEEE Q ss_conf 25-899999998752036761245799999-998565-258999999999999999999972799455358-87307877 Q T0591 266 GS-RAIIARMEKLQAIVSLRAAGYSQAVLR-GWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-QAGSYLFP 341 (406) Q Consensus 266 ~~-~~~i~~l~~~~~~~~~~~~~~~q~a~~-~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~gg~~~w~ 341 (406) .. +++.+++.+..-....+.+...+.++. .++.+. ....++..+..-++.+.|.+.|.+. |+.+... .-+-.+|+ T Consensus 238 ~~~~~~~~kI~~avfPg~qggp~~~~iAa~aval~Ea~~~~fk~Ya~qVv~NA~~La~~L~~~-G~~vv~ggTdnH~vlv 316 (407) T 2dkj_A 238 SNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLV 316 (407) T ss_dssp ESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEE T ss_pred ECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHC-CCCCCCCCCCCCEEEE T ss_conf 154789999998618634678527788999987888528789999999999998271278628-9741358887763652 Q ss_pred ECCCCCCCHHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEEC------CCHHHHHHHHHHHHHHHHH Q ss_conf 6688788989999999986891896----161026799985899850------9979999999999999998 Q T0591 342 RLPKLAVAPAEFVKILRLQAGVVVT----PGTEFSPHTADSVRLNFS------QDHEAAVAAARRIVTLVER 403 (406) Q Consensus 342 ~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~~------~~~e~l~~al~rl~~~~~~ 403 (406) ++...+.++.++. ..|++.||.+. |++.-.+-.+.-+||... ..++++++-.+-|.+++.+ T Consensus 317 dl~~~g~~g~~a~-~~Le~agI~vNkn~iP~d~~~~~~~sGiRiGT~a~TtrG~~e~dm~~ia~~i~~~l~~ 387 (407) T 2dkj_A 317 DLRPKGLTGKEAE-ERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407) T ss_dssp ECGGGTCCHHHHH-HHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHH-HHHHHCCEEECCCCCCCCCCCCCCCCCCEECCHHHHHCCCCHHHHHHHHHHHHHHHHC T ss_conf 1445675199999-9999809387357488999999889740647789985799889999999999999964 No 161 >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Probab=99.61 E-value=7.2e-13 Score=104.91 Aligned_cols=311 Identities=10% Similarity=0.086 Sum_probs=188.2 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCH--HHHH Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999-72001--0101 Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGD--KVAI 130 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd--~Vl~ 130 (406) +....+++.+.+.++... .++ -..+|-+.+|++ +|. ..++.++.+|.|+.++++++ ..+|| +|++ T Consensus 12 ~~~~~~~v~~~l~~~~~~-~G~--~v~~fE~~~a~~----~g~-----~~ai~~~Sgt~Al~~al~~l~~~~~~~~eVi~ 79 (375) T 2fnu_A 12 DKEDKKAVLEVLNSKQLT-QGK--RSLLFEEALCEF----LGV-----KHALVFNSATSALLTLYRNFSEFSADRNEIIT 79 (375) T ss_dssp CHHHHHHHHHHHTSSCCS-SSH--HHHHHHHHHHHH----HTC-----SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEE T ss_pred CHHHHHHHHHHHHCCCCC-CCH--HHHHHHHHHHHH----HCC-----CEEEEECCHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 999999999998089867-897--799999999999----780-----95999737899999999984787899886982 Q ss_pred HHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 31055138999998299699986044666776667788999998502540342156664323344378999999998637 Q T0591 131 VQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY 210 (406) Q Consensus 131 ~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~ 210 (406) |.-+|......+...|++++.+.++.. ...+.+.+++.++++|+++++++ .-|.... +.+|.++|+++ T Consensus 80 p~~t~~a~~~ai~~~G~~pvfvDid~~------~~~~~~~~~~~~~~~tkaii~vh---~~G~~~d---~~~i~~~~~~~ 147 (375) T 2fnu_A 80 TPISFVATANMLLESGYTPVFAGIKND------GNIDELALEKLINERTKAIVSVD---YAGKSVE---VESVQKLCKKH 147 (375) T ss_dssp CSSSCTHHHHHHHHTTCEEEECCBCTT------SSBCGGGSGGGCCTTEEEEEEEC---GGGCCCC---HHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC------CCCCHHHHHHHCCCCCEEEEEEC---CCCCCCC---HHHHHHHHHHC T ss_conf 597337527999857998999652333------55898999986488873999935---7555556---78999998751 Q ss_pred CCEEEECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHCC---- Q ss_conf 87578417502355-68887652233210267868998504--001046311211433-25899999998752036---- Q T0591 211 GATVIADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAF-GSRAIIARMEKLQAIVS---- 282 (406) Q Consensus 211 ~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~-~~~~~i~~l~~~~~~~~---- 282 (406) ++.||+|.+.+... +.+... ....+ +.++|| +|.++. |- -|.++ -++++.+.++.++.... T Consensus 148 ~i~vIEDaa~a~Ga~~~~~~~-------G~~gd--~~~fSf~~~K~l~~-ge-GG~i~t~~~~~~~~~~~~~~~g~~~~~ 216 (375) T 2fnu_A 148 SLSFLSDSSHALGSEYQNKKV-------GGFAL--ASVFSFHAIKPITT-AE-GGAVVTNDSELHEKMKLFRSHGMLKKD 216 (375) T ss_dssp TCEEEEECTTCTTCEETTEET-------TSSSS--EEEEECCTTSSSCC-SS-CEEEEESCHHHHHHHHHHTBTTEEESS T ss_pred CCCCCCCHHHCCCCEECCCCC-------CCCCC--CCEECCCCCCEECC-CC-CCEEEECCHHHHHHHHHHHHHCCCCCC T ss_conf 531202534436963313007-------66644--42212466600024-55-513771899999877688773557776 Q ss_pred ------------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC----CCE--E-EEEEC Q ss_conf ------------7612457999999985652589999999999999999999727994553588----730--7-87766 Q T0591 283 ------------LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ----AGS--Y-LFPRL 343 (406) Q Consensus 283 ------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----gg~--~-~w~~~ 343 (406) +..+.+....+..-|+ .+.+..+..++..+...+.|.+.+++....|. ..+ | ++++ T Consensus 217 ~~~~~~~~~G~n~r~~el~Aai~~~qL~----~l~~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~i~~~- 291 (375) T 2fnu_A 217 FFEGEVKSIGHNFRLNEIQSALGLSQLK----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMH- 291 (375) T ss_dssp SSCEEESSCCCBCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEEC- T ss_pred CCCCCCCCCCCEECCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEE- T ss_conf 6544533356410142467889999987----64799999999999999875128871346654333444405899993- Q ss_pred CCCCCCHHHHHHHHHHHCCEEEEECCC-------C---CCCCC---------CEEEEEEC--CCHHHHHHHHHHHHHHHH Q ss_conf 887889899999999868918961610-------2---67999---------85899850--997999999999999999 Q T0591 344 PKLAVAPAEFVKILRLQAGVVVTPGTE-------F---SPHTA---------DSVRLNFS--QDHEAAVAAARRIVTLVE 402 (406) Q Consensus 344 ~~~~~~~~~~~~~Ll~~~gV~v~pG~~-------F---g~~~~---------~~iRis~~--~~~e~l~~al~rl~~~~~ 402 (406) ........++...| .+.||-+..... | ...++ ..+.|.+. .++++++.-++.|.++++ T Consensus 292 ~~~~~~r~~l~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~p~ae~l~~~~l~LP~~~~lt~~di~~I~~~I~~~~~ 370 (375) T 2fnu_A 292 QKFFTCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375) T ss_dssp GGGGGGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH-HHCCCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 24304489999999-98799851446662118988841666899899999849498978999899999999999999999 Q ss_pred HHC Q ss_conf 856 Q T0591 403 RYR 405 (406) Q Consensus 403 ~~r 405 (406) +|| T Consensus 371 ~~~ 373 (375) T 2fnu_A 371 SFK 373 (375) T ss_dssp HHC T ss_pred HHC T ss_conf 857 No 162 >3gju_A Putative aminotransferase; NP_107505.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti MAFF303099} PDB: 3fcr_A* Probab=99.61 E-value=3.4e-11 Score=93.60 Aligned_cols=344 Identities=12% Similarity=0.042 Sum_probs=188.3 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.||+..| ...+-+-.|.+.+++.+++......+....... +....+++.+....... .+.+.++++++++... T Consensus 52 ~ylD~~~g~g~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~-~~~~~~a~~l~~~~p~~---~~~v~f~~SGseA~e~ 127 (460) T 3gju_A 52 KSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGT-EASITLAKMIIDRAPKG---MSRVYFGLSGSDANET 127 (460) T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCC-HHHHHHHHHHHHHSCTT---EEEEEEESSHHHHHHH T ss_pred EEEECCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHCCCCH---HCEEEECCCHHHHHHH T ss_conf 9998573888545678988999999999964786015666567-99999999865308630---0537852660789999 Q ss_pred HHHHHH----H---CC-HHHHHHHCCCHHHH-HHHHHHC--------------CEEEEEEECCCCCCCCCCCCC------ Q ss_conf 999997----2---00-10101310551389-9999829--------------969998604466677666778------ Q T0591 117 AVAATV----A---RG-DKVAIVQPDYFANR-KLVEFFE--------------GEMVPVQLDYVSADETRAGLD------ 167 (406) Q Consensus 117 ~~~~l~----~---pG-d~Vl~~~P~y~~~~-~~~~~~g--------------~~~v~v~~~~~~~~~~~~~~d------ 167 (406) ++...- . ++ ..|+...-+|++.. ......+ ....+.|......+ ...+ T Consensus 128 Aik~Ar~~~~~~g~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~ 204 (460) T 3gju_A 128 NIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTD---RSMSEEQFSQ 204 (460) T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSC---TTCCHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHH T ss_conf 9999999888509998628999808723885200121566223456565554455567885445676---6668889999 Q ss_pred --HHHHHHHHC----CCCEEEECCCCCCC-CCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCC Q ss_conf --899999850----25403421566643-233-4437899999999863787578417502355688876522332102 Q T0591 168 --LTGLEEAFK----AGARVFLFSNPNNP-AGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 239 (406) Q Consensus 168 --~~~l~~~~~----~~~k~i~l~~P~NP-TG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 239 (406) ++.+++.+. +++.++++ -|--- .|. ..+++.+++|.++|++||+++|.||+...|.-.|.-+.. .. ... T Consensus 205 ~~~~~l~~~i~~~~~~~iAavi~-EPi~g~~G~~~p~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~a~-~~-~gv 281 (460) T 3gju_A 205 HCADKLEEMILAEGPETIAAFIG-EPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGS-DH-YGI 281 (460) T ss_dssp HHHHHHHHHHHHHCGGGEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHH-HH-HTC T ss_pred HHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCEEECCCCCCCCCCH-HH-CCC T ss_conf 99999999999709997799998-5766888984599999999999999809888741106455414685553-22-498 Q ss_pred CCCCEEEEEECCHHCCCCCCCC-HHHHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHH Q ss_conf 6786899850400104631121-14332589999999875-------2036761245799999998565--258999999 Q T0591 240 DAENVVTIMGPSKTESLSGYRL-GVAFGSRAIIARMEKLQ-------AIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIA 309 (406) Q Consensus 240 ~~~~~i~~~S~SK~~~~~GlRi-G~~~~~~~~i~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~ 309 (406) .|| +.+++|.++ .|+-. +.++..+++.+.+..-. ...+++.++++..++.+.|+.. +...++..+ T Consensus 282 ~PD----i~~~gK~l~-gG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~ 356 (460) T 3gju_A 282 KPD----LITIAKGLT-SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGE 356 (460) T ss_dssp CCS----EEEECGGGT-TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH T ss_pred CCC----CEEECCCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 754----133046455-356763210206999975347875456650234789972424457888664100129999999 Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEE Q ss_conf 9999999999999727994553588730787766887----------889899999999868918961610267999858 Q T0591 310 RHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL----------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSV 379 (406) Q Consensus 310 ~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~----------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~i 379 (406) .-++.++.+.+.+.+.+.+......|.+ .=+.+... ......+...+ .++||++.++. . .+.+ T Consensus 357 ~g~~l~~~L~~l~~~~~~v~~vrG~Gl~-~~ie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gll~~~~~----~-gn~i 429 (460) T 3gju_A 357 TGAYFRAELAKAVGGHKNVGEVRGDGML-AAVEFVADKDDRVFFDASQKIGPQVATAL-AASGVIGRAMP----Q-GDIL 429 (460) T ss_dssp HHHHHHHHHHHHHTTSTTEEEEEEETTE-EEEEECSBTTTTBCCCGGGCHHHHHHHHH-HHTTEECEECS----S-SCEE T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCEE-EEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEECCC----C-CCEE T ss_conf 9999999999998549985787411379-99999427654444434589999999999-97898894268----9-9889 Q ss_pred EEE--ECCCHHHHHHHHHHHHHHHHHH Q ss_conf 998--5099799999999999999985 Q T0591 380 RLN--FSQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 380 Ris--~~~~~e~l~~al~rl~~~~~~~ 404 (406) |++ +..++++++++++++.+.+++. T Consensus 430 ~~~PpL~it~~~id~~i~~l~~al~~v 456 (460) T 3gju_A 430 GFAPPLCLTREQADIVVSKTADAVKSV 456 (460) T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 997995898999999999999999999 No 163 >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Probab=99.60 E-value=2.3e-12 Score=101.43 Aligned_cols=337 Identities=15% Similarity=0.083 Sum_probs=200.0 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCH--HHHHHH-HHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 8334156786788788899999999998087888878---88898--899999-99999864886788670788248727 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE---YRGDL--GIRDLL-APRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~~--~Lr~ai-a~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .-|+|-..+ ...+|.+.+++...+...-.-|||- ..|.. +-.|.+ .+..++.+|... -+|=..+| +. T Consensus 46 ~~l~LIaSE---N~~S~~v~~a~~S~l~nkYaEG~pg~Ryy~G~~~iD~iE~la~~rak~lF~a~~---anVqp~SG-s~ 118 (447) T 3h7f_A 46 DTLEMIASE---NFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF---ANVQPHSG-AQ 118 (447) T ss_dssp HSEECCTTC---CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSH-HH T ss_pred CCCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCC-HH T ss_conf 795487577---768999999846732364668899854426755799999999999999838875---34345753-67 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHH-----HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECCC Q ss_conf 899999999720010101310551389-----9999829969998604466677666778899999850-2540342156 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANR-----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFSN 186 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~-----~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~~ 186 (406) +...++.++++|||+|+..++...+|. ..+....++.++++++ .....+|.|++++..+ .++|+|++-. T Consensus 119 AN~av~~all~PGD~il~~~l~~GGHlshg~~~~~~~~~~~~~~y~~d-----~~~~~ID~d~~~~~a~~~kPklIi~G~ 193 (447) T 3h7f_A 119 ANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD-----PATHLIDMDAVRATALEFRPKVIIAGW 193 (447) T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC-----TTTCSCCHHHHHHHHHHHCCSEEEEEC T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 899999986288970123304667744555544555553213445666-----034331046899997633675698656 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH Q ss_conf 66432334437899999999863787578417502-35568887652233210267868998504001046311211433 Q T0591 187 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 265 (406) Q Consensus 187 P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~ 265 (406) -.+|- .+ +.+++.++|.+.|.+++.|-++- .|+-.|.-+.++.. + | |+..|..|+| +|-|-|.+. T Consensus 194 S~y~r--~~---d~~~~reIad~vga~l~~D~aHi~GLIAgg~~~~Pl~~--a-D----vvT~sTHKTl--~GPrgGiI~ 259 (447) T 3h7f_A 194 SAYPR--VL---DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPH--A-D----VVSTTVHKTL--GGGRSGLIV 259 (447) T ss_dssp SSCCS--CC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT--C-S----EEEEESSGGG--CCCSCEEEE T ss_pred CCCEE--CC---CHHHHHHHHHHCCCEEECCCCCCHHHEECCCCCCCCCC--C-C----EEEEEECCHH--CCCCCEEEE T ss_conf 45320--25---68999998763041586234230231113212564011--0-4----4764302100--367751576 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHH----CCCCEEECC-CCCEE Q ss_conf 2589999999875203676124579999-999856-5258999999999999999999972----799455358-87307 Q T0591 266 GSRAIIARMEKLQAIVSLRAAGYSQAVL-RGWFDE-APGWMEDRIARHQAIRDELLHVLRG----CEGVFARTP-QAGSY 338 (406) Q Consensus 266 ~~~~~i~~l~~~~~~~~~~~~~~~q~a~-~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~----~~g~~~~~p-~gg~~ 338 (406) ..+++.+++.+.......+.+...+.++ +.++.+ ......+..++..++.+.|.+.|.. ..|+++... .-.-. T Consensus 260 ~~~~~~~~i~~avfPg~qg~~h~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAk~La~~L~~~~~~~~G~~vv~GgTdnH~ 339 (447) T 3h7f_A 260 GKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHL 339 (447) T ss_dssp ECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSE T ss_pred ECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCE T ss_conf 25177888877518664565256678887777643377318889999999999999987545787559146318887663 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEE----EECCCCCCCCCCEEEEEE------CCCHHHHHHHHHHHHHHHH Q ss_conf 877668878898999999998689189----616102679998589985------0997999999999999999 Q T0591 339 LFPRLPKLAVAPAEFVKILRLQAGVVV----TPGTEFSPHTADSVRLNF------SQDHEAAVAAARRIVTLVE 402 (406) Q Consensus 339 ~w~~~~~~~~~~~~~~~~Ll~~~gV~v----~pG~~Fg~~~~~~iRis~------~~~~e~l~~al~rl~~~~~ 402 (406) +|+++...+.+..+. +.+|++.||.+ +|++.=.+-.+.-+||.. +..++++++..+-|.+++. T Consensus 340 vlvdl~~~g~~g~~a-~~~Le~agI~vNkn~iP~D~~~~~~~SGIRlGT~alT~rG~~e~em~~IA~lI~~aL~ 412 (447) T 3h7f_A 340 VLVDLRDSPLDGQAA-EDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447) T ss_dssp EEEECTTSSCCHHHH-HHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH T ss_pred EECCCCCCCCCHHHH-HHHHHHCCEEECCCCCCCCCCCCCCCCCCEECCHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 501112367878999-9999983918788889999999988985066888998589988999999999999985 No 164 >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; biotin biosynthesis, pyridoxal phosphate, S-adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Probab=99.60 E-value=3.7e-12 Score=100.08 Aligned_cols=345 Identities=12% Similarity=0.065 Sum_probs=184.0 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 83341567--867887888999999999980878888788889-889999999999864886788670788248727899 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGD-LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~-~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) +.|||..| ...+-+-.|.+.+++.+.+.... |....+. .+.+..+++.+...... +.+.+..+++++++.. T Consensus 45 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~~~~~~~~~~~~a~~l~~~~~~---~~~~~~~~~sGsea~e 118 (448) T 3dod_A 45 EYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA---HSTLLGMTNVPATQLAETLIDISPK---KLTRVFYSDSGAEAME 118 (448) T ss_dssp EEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCS---CCCCSSSEEHHHHHHHHHHHHHSCT---TEEEEEEESSHHHHHH T ss_pred EEEECHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHCCCC---CCCEEEEECCCCHHHH T ss_conf 999820158754447896999999999986637---7567655778999999987640786---6686885158741899 Q ss_pred HHHHHHH---H----CC-HHHHHHHCCCHHHHHHH-HHHCCEE------------EEEEECCCC-CCCCC----CCCCHH Q ss_conf 9999997---2----00-10101310551389999-9829969------------998604466-67766----677889 Q T0591 116 LAVAATV---A----RG-DKVAIVQPDYFANRKLV-EFFEGEM------------VPVQLDYVS-ADETR----AGLDLT 169 (406) Q Consensus 116 ~~~~~l~---~----pG-d~Vl~~~P~y~~~~~~~-~~~g~~~------------v~v~~~~~~-~~~~~----~~~d~~ 169 (406) .++.... . ++ ..|+...-+|+...... ...+-.. ...+..... .+..+ ..-+++ T Consensus 119 ~Aik~ar~~~~~~g~~~r~~ii~~~~~yHG~t~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (448) T 3dod_A 119 IALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLR 198 (448) T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999999887538988647999807858986775424567443357777543332345311125677983778999999 Q ss_pred HHHHHHC---CCCEEEECCCC-C-CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCE Q ss_conf 9999850---25403421566-6-43233443789999999986378757841750235568887652233210267868 Q T0591 170 GLEEAFK---AGARVFLFSNP-N-NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENV 244 (406) Q Consensus 170 ~l~~~~~---~~~k~i~l~~P-~-NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 244 (406) .+++.+. +++-++++..| . +.--...+++.+++|.++|++||+++|.||++..|...|.-+..-. ....|| T Consensus 199 ~l~~~~~~~~~~iaAviie~~i~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~~~--~gv~PD-- 274 (448) T 3dod_A 199 ELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEH--ENVQPD-- 274 (448) T ss_dssp HHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGG--GTCCCS-- T ss_pred HHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCCCCHHC--CCCCCC-- T ss_conf 9999998548983279998666348897579989999999997555821772032006401367740420--899999-- Q ss_pred EEEEECCHHCCCCCCCCHH-HHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH Q ss_conf 9985040010463112114-3325899999998-------752036761245799999998565--25899999999999 Q T0591 245 VTIMGPSKTESLSGYRLGV-AFGSRAIIARMEK-------LQAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAI 314 (406) Q Consensus 245 i~~~S~SK~~~~~GlRiG~-~~~~~~~i~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~ 314 (406) +-+++|.++ .|+-.+. ++..+++...... .....+++.+.++..++.+.|+.. +...+ ..+...++ T Consensus 275 --iv~~gK~l~-~G~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~atl~~i~~~~~~~-~~~~~g~~ 350 (448) T 3dod_A 275 --LMAAGKGIT-GGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVE-QVAEKSKK 350 (448) T ss_dssp --EEEECGGGG-TTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHH T ss_pred --EEEECCHHH-CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHH T ss_conf --898675121-79875368974388876502676323456677676877299999998776664035577-88889999 Q ss_pred HHHHHHHHHHCCCCEEECCCCCEEEEEECCCC----------CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE-- Q ss_conf 99999999727994553588730787766887----------889899999999868918961610267999858998-- Q T0591 315 RDELLHVLRGCEGVFARTPQAGSYLFPRLPKL----------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN-- 382 (406) Q Consensus 315 r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~----------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis-- 382 (406) .....+.|.+.+.+.-....| ++.=+.+... ......+...+ .++||++.|. .+.+|++ T Consensus 351 l~~~l~~l~~~~~v~~vrG~G-l~~~~el~~~~~~~~~~~~~~~~~~~i~~~~-~~~Gll~~~~-------~~~l~~~Pp 421 (448) T 3dod_A 351 LHFLLQDLHALPHVGDIRQLG-FMCGAELVRSKETKEPYPADRRIGYKVSLKM-RELGMLTRPL-------GDVIAFLPP 421 (448) T ss_dssp HHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHHHHH-HHTTEECCEE-------TTEEEECCC T ss_pred HHHHHHHHHCCCCEEEEECCC-EEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEC-------CCEEEEECC T ss_conf 999999986299878984142-5999998237654666630389999999999-9689389514-------999999799 Q ss_pred ECCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 509979999999999999998569 Q T0591 383 FSQDHEAAVAAARRIVTLVERYRA 406 (406) Q Consensus 383 ~~~~~e~l~~al~rl~~~~~~~ra 406 (406) ++.+++++++++++|.+++++..+ T Consensus 422 L~~t~~did~~~~~l~~al~~v~~ 445 (448) T 3dod_A 422 LASTAEELSEMVAIMKQAIHEVTS 445 (448) T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 488899999999999999999862 No 165 >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Probab=99.59 E-value=8.2e-12 Score=97.75 Aligned_cols=344 Identities=14% Similarity=0.103 Sum_probs=185.3 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.|||..| ...+-+-.|.+.+++.+.+...... ....-..+.+..+|+.+....+.. .+.++.+++++++... T Consensus 55 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~--~~~~~~~~~~~~lae~L~~~~p~~---~~~v~f~~sGseA~e~ 129 (476) T 3i5t_A 55 RLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYA--SPWYMATSPAARLAEKIATLTPGD---LNRIFFTTGGSTAVDS 129 (476) T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCC--CTTTCBCHHHHHHHHHHHTTSSTT---CCEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCHHHHHHH T ss_conf 99987630876662699599999999999755873--678668889999999999857988---5869850876889999 Q ss_pred HHHHHH-------HCC-HHHHHHHCCCHHHHHHHHHH-CC------------EEEEEEECCCCCCCCCC-----CCCHHH Q ss_conf 999997-------200-10101310551389999982-99------------69998604466677666-----778899 Q T0591 117 AVAATV-------ARG-DKVAIVQPDYFANRKLVEFF-EG------------EMVPVQLDYVSADETRA-----GLDLTG 170 (406) Q Consensus 117 ~~~~l~-------~pG-d~Vl~~~P~y~~~~~~~~~~-g~------------~~v~v~~~~~~~~~~~~-----~~d~~~ 170 (406) +++.-. .++ ..++...-+|+......... +. ....++........... .-+.++ T Consensus 130 Alklar~~~~~~g~~~~~~i~~~~~g~hG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (476) T 3i5t_A 130 ALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQE 209 (476) T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99997667886299750699999579878753000103665443453222223334457752235777614678889999 Q ss_pred HHHHHC---C-CCEEEECCCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCE Q ss_conf 999850---2-5403421566-643233-443789999999986378757841750235568887652233210267868 Q T0591 171 LEEAFK---A-GARVFLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENV 244 (406) Q Consensus 171 l~~~~~---~-~~k~i~l~~P-~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 244 (406) +++.+. + .+.++++ -| ..-.|. ..+++.++++.++|++||+++|.||++..+...|....... .....|| T Consensus 210 l~~~i~~~~~~~iAavi~-Epi~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~~~~~-~~gv~PD-- 285 (476) T 3i5t_A 210 FEDRIESLGPDTIAAFLA-EPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEK-VFGVVPD-- 285 (476) T ss_dssp HHHHHHHHCGGGEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHH-TTCCCCS-- T ss_pred HHHHHHHCCCCCEEEEEE-CCCCCCCCCEECCHHHHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCHHH-HCCCCCC-- T ss_conf 999998549997699997-762167854568899999999999997978885143112665778740343-1598988-- Q ss_pred EEEEECCHHCCCCC-CCCHHHHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 99850400104631-12114332589999999875-------20367612457999999985652589999999999999 Q T0591 245 VTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQ-------AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRD 316 (406) Q Consensus 245 i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~ 316 (406) | -.++|.++ .| .=++.++..+++.+.+..-. ...+++.++++..++.+.|+..++ .+..+..+++-+ T Consensus 286 i--v~~gK~L~-~G~~p~~~~~~~~~v~~~~~~~~~~~~~~~~g~T~~gnpla~aaa~a~L~~i~~--~~~~~~~~~~g~ 360 (476) T 3i5t_A 286 I--ITFAKGVT-SGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER--EGIVDQAREMAD 360 (476) T ss_dssp E--EEECGGGG-TTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHH T ss_pred E--EEECCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH T ss_conf 8--85211146-885630010113999965358775544355556889886999999999999997--137999999999 Q ss_pred HHHHHHHHC---CCCEEECCCCCEEEEEECCCC-----CC-C----HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE- Q ss_conf 999999727---994553588730787766887-----88-9----899999999868918961610267999858998- Q T0591 317 ELLHVLRGC---EGVFARTPQAGSYLFPRLPKL-----AV-A----PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN- 382 (406) Q Consensus 317 ~l~~~L~~~---~g~~~~~p~gg~~~w~~~~~~-----~~-~----~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis- 382 (406) ++.+.|+++ +.+.-.... |+++-+.+-.. .. . ...+...+ .+.||++.|. + +.+|++ T Consensus 361 ~l~~~L~~L~~~~~i~~vrg~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~l~~~~-~~~Glli~~~------G-n~l~~~P 431 (476) T 3i5t_A 361 YFAAALASLRDLPGVAETRSV-GLVGCVQCLLDPTRADGTAEDKAFTLKIDERC-FELGLIVRPL------G-DLCVISP 431 (476) T ss_dssp HHHHHHHTTTTSTTEEEEEEE-TTEEEEEECCC-----CCHHHHHHHHHHHHHH-HHTTEECEEE------T-TEEEECC T ss_pred HHHHHHHHHHCCCCEEEEECC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEC------C-CEEEEEC T ss_conf 999999987159974677426-64899998414555555521079999999999-9789289754------9-8899989 Q ss_pred -ECCCHHHHHHHHHHHHHHHHHHC Q ss_conf -50997999999999999999856 Q T0591 383 -FSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 383 -~~~~~e~l~~al~rl~~~~~~~r 405 (406) +..+++++++++++|.+.+++.. T Consensus 432 pl~it~~eid~~~~~l~~al~ev~ 455 (476) T 3i5t_A 432 PLIISRAQIDEMVAIMRQAITEVS 455 (476) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 957899999999999999999998 No 166 >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 Probab=99.59 E-value=1.2e-11 Score=96.60 Aligned_cols=341 Identities=11% Similarity=0.032 Sum_probs=195.7 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC---CC---CHHHHHHHHHHHHHHCCCCCCCCC--EEEEECCCC Q ss_conf 3341567867887888999999999980878888788---88---988999999999986488678867--078824872 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RG---DLGIRDLLAPRLAAFTGAPVDARD--GLIITPGTQ 111 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G---~~~Lr~aia~~~~~~~g~~~~~~~--~I~it~G~~ 111 (406) -|+|-..+ ...+|.+.+++...+...-.-+||-. .| ..++-....++..+.++.+.. +. ||=.-+| + T Consensus 56 ~l~LIaSE---N~~S~~v~~a~gS~ltnkYaEG~Pg~RyY~G~~~iD~iE~la~~ra~~lF~~~~a-~~~vNVqp~SG-s 130 (490) T 2a7v_A 56 GLELIASE---NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA-QWGVNVQPYSG-S 130 (490) T ss_dssp SEECCTTC---CCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT-TEEEECCCSSH-H T ss_pred CCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH-HCCCCCCCCCC-H T ss_conf 83587676---6479999998568211544478998543577668999999999999998488500-12668786872-8 Q ss_pred HHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH-----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEEECC Q ss_conf 7899999999720010101310551389999-----9829969998604466677666778899999850-254034215 Q T0591 112 GALFLAVAATVARGDKVAIVQPDYFANRKLV-----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFS 185 (406) Q Consensus 112 ~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~-----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~ 185 (406) .+-..++.+++.|||+|+..+....+|..-- ...++....+.......+.....+|.+++++..+ .++|+|++- T Consensus 131 ~AN~av~~all~pGD~im~l~l~~GGHlsHg~~~~~~~~~~~~~~~~~~~Y~~d~~~~~IDyd~l~~~a~~~kPklIi~G 210 (490) T 2a7v_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 210 (490) T ss_dssp HHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEEC T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEC T ss_conf 99999999761778659863366677654553356666521456766677753278885848999999864077658843 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHH Q ss_conf 666432334437899999999863787578417502-3556888765223321026786899850400104631121143 Q T0591 186 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA 264 (406) Q Consensus 186 ~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~ 264 (406) .-..|- .+ +.+++.++|.+.|.+++.|-++- .|+-.|.-+.++.. .+ |+.+|..|+| +|-|-|.+ T Consensus 211 ~Say~r--~~---d~~~~reIad~vgA~l~~D~aHiaGLIA~g~~~sPl~~-----aD--vVtttTHKTl--rGPrgGiI 276 (490) T 2a7v_A 211 TSAYAR--LI---DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-----AD--IVTTTTHKTL--RGARSGLI 276 (490) T ss_dssp CSSCCS--CC---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-----CS--EEEEESSGGG--CSCSCEEE T ss_pred CCCCCC--CC---CHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCHHHH-----HC--EEEEEECCCC--CCCCCEEE T ss_conf 200334--46---68999988740476188210111221116541686664-----11--1222203211--58876389 Q ss_pred HHHH---------------HHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3258---------------9999999875203676124579999-999856-5258999999999999999999972799 Q T0591 265 FGSR---------------AIIARMEKLQAIVSLRAAGYSQAVL-RGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEG 327 (406) Q Consensus 265 ~~~~---------------~~i~~l~~~~~~~~~~~~~~~q~a~-~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~g 327 (406) ...+ ++.+++.+.--....+.+...+.++ +..+.+ .....++..++.-++.+.|.+.|.+. | T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~kId~avFPg~qggph~h~iAa~Ava~~Ea~~~~fk~Ya~qVv~NAkaLA~~L~~~-G 355 (490) T 2a7v_A 277 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-G 355 (490) T ss_dssp EEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-T T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-C T ss_conf 971542224554575302568998875658530234321368899999987458068899999999999999999857-9 Q ss_pred CEEECC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEE------CCCHHHHHHHHHH Q ss_conf 455358-873078776688788989999999986891896----16102679998589985------0997999999999 Q T0591 328 VFARTP-QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVT----PGTEFSPHTADSVRLNF------SQDHEAAVAAARR 396 (406) Q Consensus 328 ~~~~~p-~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~------~~~~e~l~~al~r 396 (406) +.+... .....+|+++...+.+..+.. .+|++.||.+. |++. .+-.+.-+||.. +..++++++-.+- T Consensus 356 ~~vv~ggTdnHlvlvdl~~~g~~G~~ae-~~Le~~gI~vNkn~iP~D~-s~~~~sGiRiGT~alTtrG~~e~dm~~IA~~ 433 (490) T 2a7v_A 356 YSLVSGGTDNHLVLVDLRPKGLDGARAE-RVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDF 433 (490) T ss_dssp CEEGGGSCSSSEEEEECTTTTCCHHHHH-HHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHH T ss_pred CEEECCCCCCEEEEEECCCCCCCHHHHH-HHHHHCCCEECCCCCCCCC-CCCCCCCEEECCHHHHHCCCCHHHHHHHHHH T ss_conf 7232488886269986355688668999-9999869177877478999-8899984476688998589988999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q T0591 397 IVTLVE 402 (406) Q Consensus 397 l~~~~~ 402 (406) |.+++. T Consensus 434 I~~al~ 439 (490) T 2a7v_A 434 IDEGVN 439 (490) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 167 >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus HB8} Probab=99.59 E-value=2.6e-13 Score=107.94 Aligned_cols=336 Identities=15% Similarity=0.131 Sum_probs=189.0 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH Q ss_conf 83341567--8678878889999999999808788887888898899999999998648867886707882487278999 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406) +.+|+..| ...+-+-+|.+.+++.+.+.......+. ......+++.+.+..+. .+.++.++++++|... T Consensus 53 ~ylD~~sg~~~~~lGh~~p~i~~ai~~ql~~~~~~~~~-----~~~~~~lae~l~~~~~~----~~~v~f~~SGseAvE~ 123 (424) T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAP-----SPLEVALAKKVKRAYPF----VDLVRFVNSGTEATMS 123 (424) T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSC-----CHHHHHHHHHHHHHCTT----CCEEEEESSHHHHHHH T ss_pred EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHHHCCC----CCEEEECCCHHHHHHH T ss_conf 99985708897710789699999999998632656664-----02789999999975899----8979863963999999 Q ss_pred HHHHHH--HCCHHHHHHHCCCHHHHHHH-HHHCCEE--EEEEEC------CCCCCCCCCCCCHHHHHHHHCC---CCEEE Q ss_conf 999997--20010101310551389999-9829969--998604------4666776667788999998502---54034 Q T0591 117 AVAATV--ARGDKVAIVQPDYFANRKLV-EFFEGEM--VPVQLD------YVSADETRAGLDLTGLEEAFKA---GARVF 182 (406) Q Consensus 117 ~~~~l~--~pGd~Vl~~~P~y~~~~~~~-~~~g~~~--v~v~~~------~~~~~~~~~~~d~~~l~~~~~~---~~k~i 182 (406) ++..-. .....|+...-+|++..... ...|... ..+|.. ..........-|+++|++.++. ++.++ T Consensus 124 AiKlAr~~t~r~~ii~~~~~yHG~t~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~iaai 203 (424) T 2e7u_A 124 ALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAI 203 (424) T ss_dssp HHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEE T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 99999755477979999687178864677737886444689987899865456565657689999999997379967999 Q ss_pred ECCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCC Q ss_conf 21566--6432334437899999999863787578417502355688876522332102678689985040010463112 Q T0591 183 LFSNP--NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR 260 (406) Q Consensus 183 ~l~~P--~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 260 (406) ++ -| .+ .|...+.+.+.++.++|++||+++|.||++..+... .-+. . ......|| +-+++|.++ .|+= T Consensus 204 i~-Epv~g~-gg~~~~~~~~~~~~~~c~~~gillI~DEv~tG~gr~-~~~a-~-e~~gv~PD----iv~~gK~l~-gG~~ 273 (424) T 2e7u_A 204 IF-EPVVGN-AGVLVPTEDFLKALHEAKAYGVLLIADEVMTGFRLA-FGGA-T-ELLGLKPD----LVTLGKILG-GGLP 273 (424) T ss_dssp EE-CSSBCT-TSCBCCCHHHHHHHHHGGGGTCEEEEECTTTTTTSS-TTHH-H-HHHTCCCS----EEEECGGGG-TTSS T ss_pred EE-ECCCCC-CCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCC-CCCH-H-HHHCCCCC----EEEEEHHHH-CCCC T ss_conf 99-747888-896368778988888764068699996586554301-5653-4-65399985----999703774-9831 Q ss_pred CHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHH-HHHHHHHHHHHHCCCCEEECCC Q ss_conf 1143325899999998752---036761245799999998565--258999999999-9999999999727994553588 Q T0591 261 LGVAFGSRAIIARMEKLQA---IVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQ-AIRDELLHVLRGCEGVFARTPQ 334 (406) Q Consensus 261 iG~~~~~~~~i~~l~~~~~---~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~-~~r~~l~~~L~~~~g~~~~~p~ 334 (406) +|.+++.+++++.+..... ..+++.+.++..++.+.|+-. ...+.+...... ..++.+.+.+.+.+-+.-.... T Consensus 274 ~~av~~~~ei~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~~~e~~~l~~~~~~~g~~~~~~l~~~~~~~~~v~~VrG~ 353 (424) T 2e7u_A 274 AAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRV 353 (424) T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE T ss_pred CEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 08988969999876226987645788878413689999999999574378999999999999999999768998799606 Q ss_pred CCEEEEEECCCCC---------CCH---HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 7307877668878---------898---999999998689189616102679998589985099799999999999999 Q T0591 335 AGSYLFPRLPKLA---------VAP---AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 401 (406) Q Consensus 335 gg~~~w~~~~~~~---------~~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~ 401 (406) |+++-+.+.+.. .+. ..+...|+ +.||.+.|+ +...+++++..++++++++++.|.+++ T Consensus 354 -Glm~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Gv~~~p~------~~~~~~~~l~it~~eid~~~~~l~~al 424 (424) T 2e7u_A 354 -GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPS------NFEAAFLSVAHREEDVEKTLEALRKAL 424 (424) T ss_dssp -TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSS------SSSCEECCTTCCHHHHHHHHHHHHHHC T ss_pred -CCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHH-HCCEEECCC------CCEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf -73899998268777878772141999999999999-789286788------973597478781999999999999769 No 168 >3ke3_A Putative serine-pyruvate aminotransferase; structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Probab=99.57 E-value=2.7e-12 Score=100.97 Aligned_cols=285 Identities=14% Similarity=0.156 Sum_probs=169.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHH--HHHHHH--HCCEEEEEEECCCCCC---CCCCCCCHHHHHHH Q ss_conf 7078824872789999999972001010131055138--999998--2996999860446667---76667788999998 Q T0591 102 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFAN--RKLVEF--FEGEMVPVQLDYVSAD---ETRAGLDLTGLEEA 174 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~--~~~~~~--~g~~~v~v~~~~~~~~---~~~~~~d~~~l~~~ 174 (406) +.++++.|+|.++..++..+. +||.+++..-+.++. ...+.. .+.++..++.+..... +..--.|++++.+. T Consensus 52 ~~v~~~gsgT~a~ea~~~~l~-~~d~~lv~~~G~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 130 (379) T 3ke3_A 52 AAVIIPGSGTYGMEAVARQLT-IDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAK 130 (379) T ss_dssp EEEEEESCHHHHHHHHHHHHC-TTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHH T ss_pred CEEEEECCHHHHHHHHHHHCC-CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 779996877999999999718-8985799667718899999999718886169970244322455677885538999986 Q ss_pred H-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHH Q ss_conf 5-025403421566643233443789999999986378757841750235568887652233210267868998504001 Q T0591 175 F-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKT 253 (406) Q Consensus 175 ~-~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 253 (406) + ++++++++++.-+|-||...+.+.+.++++.++.+++++++|.+-. |..+..+... ..+ +++.|-.|. T Consensus 131 ~~~~~~~~v~~~h~etstG~~~~~~~i~~~~~~~~~~~~~~v~~~~s~-----g~~~~~~d~~---~iD--~~~~ssqK~ 200 (379) T 3ke3_A 131 IKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-----GCVWLDMKEL---GID--VLISAPQKG 200 (379) T ss_dssp HHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-----TTCCCCHHHH---TCS--EEEECTTTT T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCCCCCHHHC---CCE--EEEEECCCC T ss_conf 232586089983210255400124443210011245563478731145-----5333231004---864--999826786 Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHH-------------------C--CCCHHH-HHHHHHHHHHHCC-CHHHHHHHH Q ss_conf 0-46311211433258999999987520-------------------3--676124-5799999998565-258999999 Q T0591 254 E-SLSGYRLGVAFGSRAIIARMEKLQAI-------------------V--SLRAAG-YSQAVLRGWFDEA-PGWMEDRIA 309 (406) Q Consensus 254 ~-~~~GlRiG~~~~~~~~i~~l~~~~~~-------------------~--~~~~~~-~~q~a~~~~l~~~-~~~~~~~~~ 309 (406) + +.|| +|+++.+++.++++...... . ...++. ....+....++.. ..-..+.++ T Consensus 201 l~gp~G--lg~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tp~~~~~~al~~~l~~~~~~g~~~~~~ 278 (379) T 3ke3_A 201 WSSTPC--AGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRD 278 (379) T ss_dssp TCSCCC--EEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH T ss_pred CCCCCC--EEEECCCHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 438998--501004499996222569996402202013333310366533553056899999999898765434566689 Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCC----CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC---CCCEEEEE Q ss_conf 9999999999999727994553588----7307877668878898999999998689189616102679---99858998 Q T0591 310 RHQAIRDELLHVLRGCEGVFARTPQ----AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH---TADSVRLN 382 (406) Q Consensus 310 ~~~~~r~~l~~~L~~~~g~~~~~p~----gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~---~~~~iRis 382 (406) +.++..+.+.+.+... ++....+. .+. +....|+ +.+....++.++||.+..|-..... ..+.+||+ T Consensus 279 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~s~~v-~~~~~~~----~~~~~~~~l~~~gi~i~~G~~~~~g~~~~~~~~RI~ 352 (379) T 3ke3_A 279 AQWELGNRVRKVLTDK-GIESVAAEGFEAPGV-VVSYTER----DDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLG 352 (379) T ss_dssp HHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSE-EEEECSC----HHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEE T ss_pred HHHHHHHHHHHHHHCC-CCCCCCCCHHCCCEE-EEEECCC----CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEE T ss_conf 9999876654211013-443034815409759-9980898----879999999977979970765357866789999996 Q ss_pred EC--CCHHHHHHHHHHHHHHHHHHC Q ss_conf 50--997999999999999999856 Q T0591 383 FS--QDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 383 ~~--~~~e~l~~al~rl~~~~~~~r 405 (406) .. ++.++++..++.|++++++.- T Consensus 353 ~~g~~t~~di~~~l~al~~~L~e~~ 377 (379) T 3ke3_A 353 LFGLDKLTDIDGTVERFEKALDEVL 377 (379) T ss_dssp CCSHHHHTCHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7677999999999999999999985 No 169 >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Probab=99.55 E-value=1.9e-11 Score=95.23 Aligned_cols=340 Identities=13% Similarity=0.065 Sum_probs=197.9 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCCH--HHHHHHH-HHHHHHCCCCCCCC-CEEEEECC Q ss_conf 898334156786788788899999999998087888878---88898--8999999-99998648867886-70788248 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE---YRGDL--GIRDLLA-PRLAAFTGAPVDAR-DGLIITPG 109 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~~--~Lr~aia-~~~~~~~g~~~~~~-~~I~it~G 109 (406) +..-|+|...+ ...+|.+.+++...+...-.-+|+. ..|.. +-.|.+| ++..+.+|.+.+.. -+|=. .. T Consensus 43 q~~~l~LiaSE---N~~S~~v~~al~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp-~S 118 (483) T 1rv3_A 43 QRVGLELIASE---NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP-YS 118 (483) T ss_dssp HHSSEECCTTC---CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-SS T ss_pred HHCCCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC-CC T ss_conf 97596686467---767999999856721275557899974657760699999999999999848873347125368-86 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHCCCHHHHH----------HHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CC Q ss_conf 7278999999997200101013105513899----------999829969998604466677666778899999850-25 Q T0591 110 TQGALFLAVAATVARGDKVAIVQPDYFANRK----------LVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AG 178 (406) Q Consensus 110 ~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~----------~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~ 178 (406) ++.+-..++.++++|||+|+..+..-.+|.. .+....++.+.++++ .+...+|.+++++..+ .+ T Consensus 119 Gs~An~av~~all~pgD~im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d-----~~~~~IDyd~l~~~a~~~k 193 (483) T 1rv3_A 119 GSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVN-----PDTGYIDYDRLEENARLFH 193 (483) T ss_dssp HHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBC-----TTTCSBCHHHHHHHHHHHC T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-----CCCCCCCHHHHHHHHHHHC T ss_conf 28888998886048998775315233555445654567776412425776689875-----1257644999999987406 Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC Q ss_conf 4034215666432334437899999999863787578417502-355688876522332102678689985040010463 Q T0591 179 ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS 257 (406) Q Consensus 179 ~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 257 (406) +|+|++-.-++| ..+ +.+++.++|++.|.+++.|-++- .|+-.|.-+.++. .+ | |+..|..|+| + T Consensus 194 PklIi~G~S~y~--r~~---d~~~~reIad~vga~l~~D~sHiaGLIagg~~~sPl~--~a-D----vvt~sTHKTl--r 259 (483) T 1rv3_A 194 PKLIIAGTSCYS--RNL---DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--HC-H----VVTTTTHKTL--R 259 (483) T ss_dssp CSEEEECCSSCC--SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--TC-S----EEEEESSGGG--C T ss_pred CCEEEECHHHCC--CCC---CHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCHHH--HE-E----EEEEECCCCC--C T ss_conf 654883134412--546---7799988786449759702200133210455698566--21-1----3431204212--5 Q ss_pred CCCCHHHHHHH---------------HHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHC-CCHHHHHHHHHHHHHHHHHHH Q ss_conf 11211433258---------------99999998752036761245799999-99856-525899999999999999999 Q T0591 258 GYRLGVAFGSR---------------AIIARMEKLQAIVSLRAAGYSQAVLR-GWFDE-APGWMEDRIARHQAIRDELLH 320 (406) Q Consensus 258 GlRiG~~~~~~---------------~~i~~l~~~~~~~~~~~~~~~q~a~~-~~l~~-~~~~~~~~~~~~~~~r~~l~~ 320 (406) |-|-|.+...+ ++.+.+....-....+.+...+.++. .++.+ ......+..++.-++.+.|.+ T Consensus 260 GPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~iaa~Aval~ea~~~efk~Ya~qvv~NAk~LA~ 339 (483) T 1rv3_A 260 GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSA 339 (483) T ss_dssp CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 77733899704423355011004679999998644386643220056789999999997086889999999999999999 Q ss_pred HHHHCCCCEEECC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE----EECCCCCCCCCCEEEEEEC------CCHHH Q ss_conf 9972799455358-87307877668878898999999998689189----6161026799985899850------99799 Q T0591 321 VLRGCEGVFARTP-QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVV----TPGTEFSPHTADSVRLNFS------QDHEA 389 (406) Q Consensus 321 ~L~~~~g~~~~~p-~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v----~pG~~Fg~~~~~~iRis~~------~~~e~ 389 (406) .|.+. |+.+... .....+++++...+.+..+. +.+|++.||.+ +||+.. +-.+.-+||... ..+++ T Consensus 340 ~L~~~-G~~v~~GgTdnHlvlvdl~~~g~~g~~a-~~~Le~~gI~~Nkn~iP~D~~-~~~~sGiRiGT~alTtrG~~e~d 416 (483) T 1rv3_A 340 ALVEL-GYKIVTGGSDNHLILVDLRSKGTDGGRA-EKVLEACSIACNKNTCPGDKS-ALRPSGLRLGTPALTSRGLLEKD 416 (483) T ss_dssp HHHHT-TCEEGGGSCSSSEEEEEGGGGTCCHHHH-HHHHHHTTEECEEECCSSCSC-TTSCCEEEEECHHHHHTTCCHHH T ss_pred HHHHC-CCEEECCCCCCCEEEEEEHHCCCCHHHH-HHHHHHCCCEECCCCCCCCCC-CCCCCEEEECCHHHHHCCCCHHH T ss_conf 99968-9675269887663787522118879999-999998295778785789999-99998048667899858998899 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q T0591 390 AVAAARRIVTLVE 402 (406) Q Consensus 390 l~~al~rl~~~~~ 402 (406) +++-.+-|.++++ T Consensus 417 m~~iA~~I~~~l~ 429 (483) T 1rv3_A 417 FQKVAHFIHRGIE 429 (483) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 170 >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- aminobutyric acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Probab=99.55 E-value=2.6e-12 Score=101.12 Aligned_cols=343 Identities=11% Similarity=0.089 Sum_probs=177.8 Q ss_pred CCEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 8334156--78678878889999999999808788---887888898899999999998648867886707882487278 Q T0591 39 RPVDFSH--GDVDAHEPTPGAFDLFSAGVQSGGVQ---AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 39 ~~i~ls~--G~pd~~~p~~~~~~~~~~~~~~~~~~---~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) +.|||.. |...+-+-+|.+.+++.+.+...... .+. ......+.+.+++.+...... ..+.++.++.++++ T Consensus 64 ~ylD~~~g~~~~~lGH~~p~v~~ai~~q~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~---~~~~v~f~~sGsEA 139 (472) T 1ohv_A 64 RMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALG-ILPPENFVEKLRESLLSVAPK---GMSQLITMACGSCS 139 (472) T ss_dssp EEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTT-TSCBTTHHHHHHHTGGGGCCT---TCCEEEEESSHHHH T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCHH T ss_conf 99986338997766289399999999997351521143225-554699999999999864776---70248870575057 Q ss_pred HHHHHHHHH----------------------------HCCHHHHHHHCCCHHHH-HHHHHHCC-----------EEEEEE Q ss_conf 999999997----------------------------20010101310551389-99998299-----------699986 Q T0591 114 LFLAVAATV----------------------------ARGDKVAIVQPDYFANR-KLVEFFEG-----------EMVPVQ 153 (406) Q Consensus 114 l~~~~~~l~----------------------------~pGd~Vl~~~P~y~~~~-~~~~~~g~-----------~~v~v~ 153 (406) ...++.... .+...|+...-+|++.. ......+- .....+ T Consensus 140 ~e~AlklAr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~~yHG~T~gals~t~~~~~~~~~~~~~~~~~~~ 219 (472) T 1ohv_A 140 NENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAP 219 (472) T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEEC T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 78999999999875046754211000122110024578885599967861799876433568744444554566777667 Q ss_pred ECCCCCCCCCC--------CCCHHHHHHHHC------CCCEEEECCCC-CCCCC-CCCCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 04466677666--------778899999850------25403421566-64323-3443789999999986378757841 Q T0591 154 LDYVSADETRA--------GLDLTGLEEAFK------AGARVFLFSNP-NNPAG-VVYSAEEIGQIAALAARYGATVIAD 217 (406) Q Consensus 154 ~~~~~~~~~~~--------~~d~~~l~~~~~------~~~k~i~l~~P-~NPTG-~~~s~~~l~~i~~~a~~~~~~ii~D 217 (406) ..........+ ..+++++++.+. .++.++++ -| ..-.| ...+++.+++|.++|++||+++|.| T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv-EPiqg~gG~~~~~~~fl~~lr~lc~~~gillI~D 298 (472) T 1ohv_A 220 FPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV-EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVD 298 (472) T ss_dssp CCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE-CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE T ss_conf 776445532235553046789999999999997517885689997-4542568867764577899999999738815762 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 75023556888765223321026786899850400104631121143325899999998752036761245799999998 Q T0591 218 QLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWF 297 (406) Q Consensus 218 e~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l 297 (406) |++..|...|.-+..- ... ..++ ..+-+++|.++..|+=.+-++.+ ........+++.+.++..++.+.| T Consensus 299 EV~tG~GRtG~~~a~e-~~g-v~pd--pdi~~~gkgl~~g~~~~~~~~~~------~~~~~~~~T~~gnpl~~aaa~a~L 368 (472) T 1ohv_A 299 EVQTGGGSTGKFWAHE-HWG-LDDP--ADVMTFSKKMMTGGFFHKEEFRP------NAPYRIFNTWLGDPSKNLLLAEVI 368 (472) T ss_dssp CTTTTTTTTSSSSGGG-GGC-CSSC--CSEEEECGGGSSEEEEECGGGSC------SSSSSSCCSSSSCHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHH-HCC-CCCC--CCCCCCCCCCCCCCEEEEEEECC------CCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 4645787665732233-238-6514--66401013554232245541035------555433345788779987553377 Q ss_pred HCC--CHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCC Q ss_conf 565--258999999999999999999972799-45535887307877668878898999999998689189616102679 Q T0591 298 DEA--PGWMEDRIARHQAIRDELLHVLRGCEG-VFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH 374 (406) Q Consensus 298 ~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g-~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~ 374 (406) +.. +..++...+.-+..++.+.+...+.+. +.-... -|+++=+.+++. ....+++..++ ++||++.+. T Consensus 369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VRG-~Gl~~~ie~~~~-~~~~~~~~~~~-~~Gll~~~~------ 439 (472) T 1ohv_A 369 NIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPDE-SIRNKLISIAR-NKGVMLGGC------ 439 (472) T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSSH-HHHHHHHHHHH-HTTEECEEE------ T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEEEEEEECCCH-HHHHHHHHHHH-HCCEEEEEC------ T ss_conf 787052699999999999999999998568883677762-238999982887-99999999999-699599517------ Q ss_pred CCCEEEEE--ECCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99858998--50997999999999999999856 Q T0591 375 TADSVRLN--FSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 375 ~~~~iRis--~~~~~e~l~~al~rl~~~~~~~r 405 (406) +++.||+. +..+++++++++++|.+++.++| T Consensus 440 g~~~lr~~PpL~it~~ei~~~l~~l~~~l~el~ 472 (472) T 1ohv_A 440 GDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472 (472) T ss_dssp TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC- T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 999899949977899999999999999999609 No 171 >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Probab=99.54 E-value=1.8e-10 Score=88.68 Aligned_cols=325 Identities=11% Similarity=0.112 Sum_probs=185.7 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---C-----C------H Q ss_conf 999998087888878888988999999999986488678867078824872789999999972---0-----0------1 Q T0591 61 FSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA---R-----G------D 126 (406) Q Consensus 61 ~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---p-----G------d 126 (406) +...+.......|--+....++-+.+.+|+.+..|.+.... .=++|+|++++...++.+.-+ | | = T Consensus 112 ~l~~~~n~n~~~~~~sP~~t~lE~~vi~wl~~l~g~~~~~~-~G~~tsGgT~anl~al~~AR~~~~~~~~~~~~~~~~~~ 190 (504) T 2okj_A 112 WLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKL 190 (504) T ss_dssp HHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCE T ss_pred HHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCC-CEEEECCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCE T ss_conf 99998465776631080469999999999999839998888-88980864899999999999985735553175778873 Q ss_pred HHHHHHCCCHHHHHHHHHHCC---EEEEEEECCCCCCCCCCCCCHHHHHHHHCCC------CEEEECCCCCCCCCCCCCH Q ss_conf 010131055138999998299---6999860446667766677889999985025------4034215666432334437 Q T0591 127 KVAIVQPDYFANRKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 127 ~Vl~~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPTG~~~s~ 197 (406) .|++++=++++....+...|. .++.||++ .++.+|+++|++++.+. +-+|+.+-....||++=+ T Consensus 191 ~v~~S~~aH~Sv~Kaa~~lGlg~~~v~~v~~d------~~~~md~~~L~~~i~~~~~~g~~p~~VvataGTT~~GaiDp- 263 (504) T 2okj_A 191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCN------ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP- 263 (504) T ss_dssp EEEEETTSCTHHHHHHHHTTSCGGGEEEECBC------TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC- T ss_pred EEEECCCCHHHHHHHHHHCCCCCEEEEEECCC------CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECC- T ss_conf 89933622289999999749985247873458------76672899999999998856997559983278866321044- Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC-HHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHHHHH Q ss_conf 89999999986378757841750235568887652-2332102678689985040010463112114332-589999999 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTH-LRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARME 275 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~~l~ 275 (406) +++|.++|++|++|+-+|-+|+.+..--..... +... ..-..| ..++.|.+..| +=+|++.. ++....... T Consensus 264 --l~~I~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi---~~aDSi-t~d~HK~l~~p-~~~g~~l~r~~~~~~~~~ 336 (504) T 2okj_A 264 --IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI---ERANSV-TWNPHKMMGVL-LQCSAILVKEKGILQGCN 336 (504) T ss_dssp --HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG---GGCSEE-EECTTSTTCCC-SCCEEEEESSTTHHHHHH T ss_pred --HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHCCC---CCCCEE-EECCCCCCCCC-CCCEEEECCCHHHHHHHH T ss_conf --99999999981986997241224200374433644796---400255-46665446757-776100137899988764 Q ss_pred HHH-HHC----------------CCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE--- Q ss_conf 875-203----------------67612----457999999985652589999999999999999999727994553--- Q T0591 276 KLQ-AIV----------------SLRAA----GYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR--- 331 (406) Q Consensus 276 ~~~-~~~----------------~~~~~----~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~--- 331 (406) ... .+. ++..+ .+...+.... -+.+-+++...+.-+..+.+.+.|.+.+++++. T Consensus 337 ~~~~~YL~~~~~~~~~~~~~~~~~~~~sR~~~alklw~~l~~--~G~~g~~~~i~~~~~lA~~l~~~l~~~~~felv~~~ 414 (504) T 2okj_A 337 QMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA--KGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG 414 (504) T ss_dssp CCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSS T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 147201166654567777756566666731569999998731--488679999999999999999998508984897569 Q ss_pred CCCCCEEEEEECCCCC--C-C-----------HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHHHHHHHH Q ss_conf 5887307877668878--8-9-----------89999999986891896161026799985899850---9979999999 Q T0591 332 TPQAGSYLFPRLPKLA--V-A-----------PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVAAA 394 (406) Q Consensus 332 ~p~gg~~~w~~~~~~~--~-~-----------~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~l~~al 394 (406) .|+-+.-+|--.|+.. . + ..++..+|.++ |..+...+.. ..+..++|++++ +++++++..+ T Consensus 415 ~p~~~~V~Fr~~p~~l~~~~~~~~~~~~~~~~n~~l~~~l~~~-G~~~~~~~~~-~~~~~~lR~~~~n~~tt~~did~l~ 492 (504) T 2okj_A 415 EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQ-GDKANFFRMVISNPAATQSDIDFLI 492 (504) T ss_dssp CCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEECCCCTTCCHHHHHHHH T ss_pred CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHH T ss_conf 9855799997127100456653345999999999999999945-9899974170-6992899999699999999999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999985 Q T0591 395 RRIVTLVERY 404 (406) Q Consensus 395 ~rl~~~~~~~ 404 (406) +.|.++-+++ T Consensus 493 ~~i~~~a~el 502 (504) T 2okj_A 493 EEIERLGQDL 502 (504) T ss_dssp HHHHHHHTC- T ss_pred HHHHHHHHHH T ss_conf 9999999884 No 172 >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Probab=99.53 E-value=1.5e-11 Score=95.96 Aligned_cols=343 Identities=12% Similarity=0.032 Sum_probs=185.6 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 83341567--8678878889999999999808788887888898-89999999999864886788670788248727899 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDL-GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~-~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) +.|||..| ...+.+-.|.+.+++.+.+...... +...+.+ .....+++.+...... +.+.+..+++++++.. T Consensus 56 ~ylD~~~g~g~~~lGH~~p~i~~ai~~q~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~---~~~~v~~~~SGseA~e 130 (472) T 3hmu_A 56 EILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY--NTFFKTTHVPAIALAQKLAELAPG---DLNHVFFAGGGSEAND 130 (472) T ss_dssp EEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC--CSSSSEECHHHHHHHHHHHHHSCT---TEEEEEEESSHHHHHH T ss_pred EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHCCC---CCCEEEECCCCCHHHH T ss_conf 99986549997760799899999999998555773--576456679999999997764787---7587997188627999 Q ss_pred HHHHHHH----H---CC-HHHHHHHCCCHHHH-HHHHHHCC-----------EEEEEEECCCCCCCCCCCC--------C Q ss_conf 9999997----2---00-10101310551389-99998299-----------6999860446667766677--------8 Q T0591 116 LAVAATV----A---RG-DKVAIVQPDYFANR-KLVEFFEG-----------EMVPVQLDYVSADETRAGL--------D 167 (406) Q Consensus 116 ~~~~~l~----~---pG-d~Vl~~~P~y~~~~-~~~~~~g~-----------~~v~v~~~~~~~~~~~~~~--------d 167 (406) .++...- . ++ ..|+....+|++.. ......|. .....+..... ...... + T Consensus 131 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~~g~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~ 208 (472) T 3hmu_A 131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWW--AEGGDMDPEEFGLAR 208 (472) T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHH--HHCTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHH T ss_conf 999999986775499886499998368788865454457875344677888877667888754--566788837788999 Q ss_pred HHHHHHHHC----CCCEEEECCCCCC-CCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCC Q ss_conf 899999850----2540342156664-3233-443789999999986378757841750235568887652233210267 Q T0591 168 LTGLEEAFK----AGARVFLFSNPNN-PAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 241 (406) Q Consensus 168 ~~~l~~~~~----~~~k~i~l~~P~N-PTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 241 (406) ++++++.+. +++.+|++ -|=. =.|. ..+++.++.|.++|+++|+++|.||++..|.-.|.-+..- . ....| T Consensus 209 ~~~l~~~i~~~~~~~vAAvi~-EPi~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~-~-~~v~P 285 (472) T 3hmu_A 209 ARELEEAILELGENRVAAFIA-EPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQ-T-MGIRP 285 (472) T ss_dssp HHHHHHHHHHHCGGGEEEEEE-CSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHH-H-HTCCC T ss_pred HHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCC-C-CCCCC T ss_conf 999999999738998799998-27778889835998999999999998298999603332577577787100-2-79979 Q ss_pred CCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH Q ss_conf 868998504001046311211433258999999987--52036761245799999998565--25899999999999999 Q T0591 242 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL--QAIVSLRAAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDE 317 (406) Q Consensus 242 ~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~ 317 (406) | +-+++|.++....-+|.++..+.+.+....- ....+++.+.++..++.+.|+.- +......+..-++..+. T Consensus 286 D----iv~~gK~l~gG~~p~a~~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~ 361 (472) T 3hmu_A 286 H----IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKE 361 (472) T ss_dssp S----EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHH T ss_pred C----EEEECCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 9----898898265598652115658999985167877625588999689999999999874234999999999999999 Q ss_pred HHHHHHHCCCCEEECCCCCEEEEEECCCCC-------CC----HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE--EC Q ss_conf 999997279945535887307877668878-------89----899999999868918961610267999858998--50 Q T0591 318 LLHVLRGCEGVFARTPQAGSYLFPRLPKLA-------VA----PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN--FS 384 (406) Q Consensus 318 l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~-------~~----~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~ 384 (406) +.+.+.+.+.+.-.... |++.=+.+.... .. ...+...+ .+.|+++.|+ .+.+|++ +. T Consensus 362 l~~~~~~~~~i~~vrG~-Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gl~~~~~-------g~~l~~~PpL~ 432 (472) T 3hmu_A 362 KWEALTDHPLVGEAKIV-GMMASIALTPNKASRAKFASEPGTIGYICRERC-FANNLIMRHV-------GDRMIISPPLV 432 (472) T ss_dssp HHHGGGGSTTEEEEEEE-TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHH-HHTTBCCEEE-------TTEEEECCCTT T ss_pred HHHHHHHCCCEEEEEEC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HHCCEEEEEC-------CCEEEEECCCC T ss_conf 99999628983479720-638999971574201233332238999999999-9789189525-------98899969988 Q ss_pred CCHHHHHHHHHHHHHHHHHH Q ss_conf 99799999999999999985 Q T0591 385 QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 385 ~~~e~l~~al~rl~~~~~~~ 404 (406) .+++++++++++|.+++++. T Consensus 433 it~~eid~~l~~l~~aL~ev 452 (472) T 3hmu_A 433 ITPAEIDEMFVRIRKSLDEA 452 (472) T ss_dssp CCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999 No 173 >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridoxal phosphate; HET: PLP; 1.40A {Pseudomonas putida} Probab=99.53 E-value=1.1e-11 Score=96.97 Aligned_cols=341 Identities=13% Similarity=0.089 Sum_probs=189.2 Q ss_pred CCEEECCC--CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH Q ss_conf 83341567--86788788899999999998087888878888-9889999999999864886788670788248727899 Q T0591 39 RPVDFSHG--DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRG-DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 115 (406) Q Consensus 39 ~~i~ls~G--~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G-~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~ 115 (406) +.||+..| ...+.+-.|.+.+++.+.+..... ....+ .-+....+|+.+....+. ..+.+..+++++++.. T Consensus 51 ~ylD~~~g~g~~~lGh~~p~v~~Ai~~q~~~~~~---~~~~~~~~~~~~~la~~l~~~~p~---~~~~~~~~~sGseA~e 124 (449) T 3a8u_X 51 KVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDY---SPGFQYGHPLSFQLAEKITDLTPG---NLNHVFFTDSGSECAL 124 (449) T ss_dssp EEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSC---CCSSSCCCHHHHHHHHHHHTTSST---TEEEEEEESSHHHHHH T ss_pred EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHCCCC---CCCEEEECCCHHHHHH T ss_conf 9998534898753479959999999999965787---567755887799999977630887---6515762363367999 Q ss_pred HHHHHHHH--------CCHHHHHHHCCCHHHHH-HHHHHCC------------EEEEEEECCC-CCCCCC--CCCC---- Q ss_conf 99999972--------00101013105513899-9998299------------6999860446-667766--6778---- Q T0591 116 LAVAATVA--------RGDKVAIVQPDYFANRK-LVEFFEG------------EMVPVQLDYV-SADETR--AGLD---- 167 (406) Q Consensus 116 ~~~~~l~~--------pGd~Vl~~~P~y~~~~~-~~~~~g~------------~~v~v~~~~~-~~~~~~--~~~d---- 167 (406) .+++.... ..+.|+...-+|++... .....+. ....+|.... ...... .... T Consensus 125 ~Aiklar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (449) T 3a8u_X 125 TAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIAL 204 (449) T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHH T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 99999999987510567637999257878863331220578777666567788865555433334334544332037889 Q ss_pred HHHHHHHH----CCCCEEEECCCC--CCCCC-CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf 89999985----025403421566--64323-344378999999998637875784175023556888765223321026 Q T0591 168 LTGLEEAF----KAGARVFLFSNP--NNPAG-VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 240 (406) Q Consensus 168 ~~~l~~~~----~~~~k~i~l~~P--~NPTG-~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 240 (406) ...+++.+ .+++.++++ -| +| .| ...+++.+++|.++|++||+++|.||++..|.-.|..... . ..... T Consensus 205 ~~~~~~~~~~~~~~~iAavi~-EPi~g~-~G~~~~~~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~~~-~-~~gv~ 280 (449) T 3a8u_X 205 ADELLKLIELHDASNIAAVFV-EPLAGS-AGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGA-D-SFGVT 280 (449) T ss_dssp HHHHHHHHHHHCGGGEEEEEE-CSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHH-H-HHTCC T ss_pred HHHHHHHHHHHCCCCEEEEEE-CCCCCC-CCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEECCCC-C-CCCCC T ss_conf 999999999727886259997-124577-7981399899999999999839999982334234621002550-0-37989 Q ss_pred CCCEEEEEECCHHCCCCC-CCCHHHHHHHHHHHHHHHHH---------HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 786899850400104631-12114332589999999875---------20367612457999999985652589999999 Q T0591 241 AENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQ---------AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIAR 310 (406) Q Consensus 241 ~~~~i~~~S~SK~~~~~G-lRiG~~~~~~~~i~~l~~~~---------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 310 (406) || | -+++|.++ .| .-++.+++.+++.+.+..-. ...+++.++++..++.+.|+...+ ++..++ T Consensus 281 PD--i--v~~gK~l~-gG~~p~a~~~~~~~i~~~~~~~~~~~~~~~~~h~~T~~gnpl~~aAa~atL~~l~~--~~~~~~ 353 (449) T 3a8u_X 281 PD--L--MCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK--ENLVQS 353 (449) T ss_dssp CS--E--EEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHH T ss_pred CC--H--HHHHHHHC-CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC--CCCHHH T ss_conf 51--5--42343314-87364432235589998750377543245666565778986320024320111101--120057 Q ss_pred HHHHHHHHHHHHHHC---CCCEEECCCCCEEEEEECCCCC-C-C--HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEE- Q ss_conf 999999999999727---9945535887307877668878-8-9--899999999868918961610267999858998- Q T0591 311 HQAIRDELLHVLRGC---EGVFARTPQAGSYLFPRLPKLA-V-A--PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLN- 382 (406) Q Consensus 311 ~~~~r~~l~~~L~~~---~g~~~~~p~gg~~~w~~~~~~~-~-~--~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis- 382 (406) .++.-+.+.+.|+++ ..+.-.... |+..-+.+.... . . ..+... ++.+.||.+.++ .+.+|++ T Consensus 354 ~~~~g~~l~~~l~~l~~~~~V~~vrg~-Glm~~i~~~~~~~~~~~~~~~~~~-~l~~~Gl~~~~~-------gn~i~~~P 424 (449) T 3a8u_X 354 VAEVAPHFEKALHGIKGAKNVIDIRNF-GLAGAIQIAPRDGDAIVRPFEAGM-ALWKAGFYVRFG-------GDTLQFGP 424 (449) T ss_dssp HHHHHHHHHHHHHTTTTSTTEEEEEEE-TTEEEEEECCBTTBSSHHHHHHHH-HHHHHTEECEEE-------TTEEEECC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECC-CEEEEEEEECCCCHHHHHHHHHHH-HHHHCCCEEECC-------CCEEEEEC T ss_conf 788999999999986058983786036-719999995587369999999999-999889388117-------99899969 Q ss_pred -ECCCHHHHHHHHHHHHHHHHHHC Q ss_conf -50997999999999999999856 Q T0591 383 -FSQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 383 -~~~~~e~l~~al~rl~~~~~~~r 405 (406) +..+++++++++++|.++++++. T Consensus 425 pL~~s~~did~~l~~l~~al~~l~ 448 (449) T 3a8u_X 425 TFNSKPQDLDRLFDAVGEVLNKLL 448 (449) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHCC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 857899999999999999999985 No 174 >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* Probab=99.52 E-value=2.4e-12 Score=101.37 Aligned_cols=309 Identities=12% Similarity=0.119 Sum_probs=178.5 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHHCCC Q ss_conf 99999999980878888788889889999999999864886788670788248727899999999-72001010131055 Q T0591 57 AFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDY 135 (406) Q Consensus 57 ~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~P~y 135 (406) -++++.+.+.++...+++|. ..+|-+.++++ +|.+ ..+.++.+|.||.++++++ +.+||+|+++.-+| T Consensus 14 e~~~v~~~l~s~~~~~~G~~--v~~fE~~~a~~----~~~~-----~av~~~SgT~Al~lal~al~~~~gdeVi~p~~t~ 82 (394) T 1o69_A 14 ELKYIEEVFKSNYIAPLGEF--VNRFEQSVKDY----SKSE-----NALALNSATAALHLALRVAGVKQDDIVLASSFTF 82 (394) T ss_dssp HHHHHHHHHHHTTTSCTTHH--HHHHHHHHHHH----HCCS-----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC T ss_pred HHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHH----HCCC-----EEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCH T ss_conf 99999999952985789989--99999999999----7839-----6999778799999999986988829999499760 Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 13899999829969998604466677666778899999850254034215666432334437899999999863787578 Q T0591 136 FANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI 215 (406) Q Consensus 136 ~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii 215 (406) ......+...|++++.+.++.. ....-.+.++.....+++++++++++.. |.. .++++|.++|++++++|| T Consensus 83 ~~~~~~~~~~g~~pv~~d~~~~---~~~~~~~~~~~~~~~~~~~~aii~~~~~---g~~---~d~~~i~~i~~~~~i~vI 153 (394) T 1o69_A 83 IASVAPICYLKAKPVFIDCDET---YNIDVDLLKLAIKECEKKPKALILTHLY---GNA---AKMDEIVEICKENDIVLI 153 (394) T ss_dssp GGGTHHHHHTTCEEEEECBCTT---SSBCHHHHHHHHHHCSSCCCEEEEECGG---GCC---CCHHHHHHHHHHTTCEEE T ss_pred HHHHHHHHHCCEEEEEECCCCC---CCCCHHHHHHHHHHCCCCCEEEEEECCC---CCC---CHHHHHHHHHHHCCCEEE T ss_conf 6421467636607887236665---3222033555541035686799982467---886---058999999997596079 Q ss_pred ECCCCCCCC-CCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHCC--------- Q ss_conf 417502355-68887652233210267868998504--0010463112114332-5899999998752036--------- Q T0591 216 ADQLYSRLR-YAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQAIVS--------- 282 (406) Q Consensus 216 ~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~~--------- 282 (406) +|.+.+... |.+.... ...+ +.++|| +|.+... --|+++. ++++.+.++.++.... T Consensus 154 ED~Aqa~Ga~~~~k~~G-------~~gd--~~~fSF~~~K~l~~g--~GG~i~t~d~~~~~~~~~~~~~~~~~~~~~~~~ 222 (394) T 1o69_A 154 EDAAEALGSFYKNKALG-------TFGE--FGVYSYNGNKIITTS--GGGMLIGKNKEKIEKARFYSTQARENCLHYEHL 222 (394) T ss_dssp EECTTCTTCEETTEETT-------SSSS--EEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCS T ss_pred EECCCHHCCEECCEECC-------CCCC--EEEEECCCCCCCCCC--CCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 60443211723884236-------6765--368846788602147--896341589999999998765188886555422 Q ss_pred -----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC------EEEEEECCC------ Q ss_conf -----761245799999998565258999999999999999999972799455358873------078776688------ Q T0591 283 -----LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAG------SYLFPRLPK------ 345 (406) Q Consensus 283 -----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg------~~~w~~~~~------ 345 (406) +..+.+.-.....-|+. +.+..+..++..+.+.+.|.+.... ...+... +++.+.... T Consensus 223 ~~G~n~rm~~~~Aaig~~qL~~----l~~~~~~r~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 297 (394) T 1o69_A 223 DYGYNYRLSNVLGAIGVAQMEV----LEQRVLKKREIYEWYKEFLGEYFSF-LDELENSRSNRWLSTALINFDKNELNAC 297 (394) T ss_dssp SCCCBCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTTTEEC-CCCCTTEECCCSSEEEEESCCGGGSCCC T ss_pred CCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCEEEEEEEECCCCCCCCHH T ss_conf 4785313461377889999999----9999999999999999972476655-7888999664057899971552200024 Q ss_pred ------------CCCCHHHHHHHHHHHCCEEEEECCC-------CCC----CC-------CCEEEEEE--CCCHHHHHHH Q ss_conf ------------7889899999999868918961610-------267----99-------98589985--0997999999 Q T0591 346 ------------LAVAPAEFVKILRLQAGVVVTPGTE-------FSP----HT-------ADSVRLNF--SQDHEAAVAA 393 (406) Q Consensus 346 ------------~~~~~~~~~~~Ll~~~gV~v~pG~~-------Fg~----~~-------~~~iRis~--~~~~e~l~~a 393 (406) ...+..++.+.| .+.||-+.++.. |.. .. ...+.|.+ ..++++++.- T Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~l~~~~~~~~~~~~~~pna~~l~~~~i~LP~~~~lt~~di~~I 376 (394) T 1o69_A 298 QKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEI 376 (394) T ss_dssp CEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHCCCCEEEECCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHH T ss_conf 443012111102411499999999-9779987861864342965515788899899999839798979987799999999 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q T0591 394 ARRIVTLVE 402 (406) Q Consensus 394 l~rl~~~~~ 402 (406) ++.|.++++ T Consensus 377 ~~~i~~~~k 385 (394) T 1o69_A 377 SKLILKSIK 385 (394) T ss_dssp HHHHHHHHC T ss_pred HHHHHHHHH T ss_conf 999999998 No 175 >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} Probab=99.50 E-value=2.4e-10 Score=87.79 Aligned_cols=327 Identities=11% Similarity=0.087 Sum_probs=179.3 Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 833415678678878889999999999808788887------88889889999999999864886788670788248727 Q T0591 39 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYT------EYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 39 ~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) +.++|+-| +..-++.+++++.+.+.+....+.+ -+.-..++-+.+.+.+++.++.+-+ ..|+++.|++. T Consensus 5 ~~~~F~pG---P~~lp~~V~~~~~~~~~~~~~~~~~~leisHRs~eF~~l~~~~~~~L~~l~~~p~~--y~v~~~~~g~t 79 (361) T 3m5u_A 5 RKINFSAG---PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD--YEVLFLQGGAS 79 (361) T ss_dssp CCEECCSS---SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT--EEEEEESSHHH T ss_pred CCCCCCCC---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CEEEEECCCHH T ss_conf 56761789---99999999999998753212468632244768878999999999999999689998--68999689569 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHH--HHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 8999999997200101013105513--89999982996999860446667766677889999985025403421566643 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNP 190 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~--~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NP 190 (406) +...++..++.+||+|++..-++.+ ....++.+|.....+..... ..+++++++.. ......+.+++-++. T Consensus 80 ~~e~ai~~~~~~~~~vl~~~nG~fg~r~~~~a~~~g~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (361) T 3m5u_A 80 LQFAMIPMNLALNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEE------SNFDHIPRVEF-SDNADYAYICSNNTI 152 (361) T ss_dssp HHHHHHHHHHCCSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTT------TTSCSCCCCCC-CTTSSEEEEESEETT T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCC------CCCCCCHHHCC-CCCCEEEEEECCCCC T ss_conf 99999986456787058842775887999999872986300023445------78776022204-666507985133467 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 23344378999999998637875784175023556888765223321026786899850400104631121143325899 Q T0591 191 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) ||.... .+++++..+|+|-+=+. .+.+. .. .+--+.+.|-+|.++.|| +++++..++. T Consensus 153 ~~~~~~---------~~~~~~~l~ivDavSs~---g~~~i---d~-----~~~dv~~~s~qk~~~ppG--~~~v~~~~~a 210 (361) T 3m5u_A 153 YGTQYQ---------NYPKTKTPLIVDASSDF---FSRKV---DF-----SNIALFYGGVQKNAGISG--LSCIFIRKDM 210 (361) T ss_dssp TTEECS---------SCCCCSSCEEEECGGGT---TSSCC---CC-----TTEEEEEEETTTTSSCTT--CEEEEEEHHH T ss_pred CCCCCC---------CCCCCCCCEEEECCCCC---CCCCC---CH-----HHCCEEEEECCCCCCCCC--HHHHHCCHHH T ss_conf 676542---------25667875588645321---14555---78-----894567776232468853--1012105999 Q ss_pred HHHHHHH------------HHHCCCC-HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 9999987------------5203676-124579999999856--525899999999999999999997279945535887 Q T0591 271 IARMEKL------------QAIVSLR-AAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQA 335 (406) Q Consensus 271 i~~l~~~------------~~~~~~~-~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g 335 (406) +++.... +.....+ +++.....+..++.. .....+....++++++..+...+....++.....+. T Consensus 211 le~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (361) T 3m5u_A 211 LERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADK 290 (361) T ss_dssp HHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCG T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 97542456751767889876244466887521888999999998716617899999999999999997277754467687 Q ss_pred C----EEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHHH Q ss_conf 3----07877668878898999999998689189616102679998589985--099799999999999999985 Q T0591 336 G----SYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF--SQDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 336 g----~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~~~e~l~~al~rl~~~~~~~ 404 (406) . .-+-+.+|+ +.+........++++|+....|. +..+ + +|++. +.++|+++.-++-|+++.+|| T Consensus 291 ~~rS~tv~~~~~~~-~~~~~~~f~~~l~~~Gi~~~~G~--~~~g-~-~RIs~~~~~~~e~v~~L~~~~~ef~~~~ 360 (361) T 3m5u_A 291 KDRSLMNVSFNIAK-NKDLEPLFVKEAEEAGMIGLKGH--RILG-G-IRASIYNALNLDQVKTLCEFMKEFQGKY 360 (361) T ss_dssp GGBCSSEEEEEESS-CTTHHHHHHHHHHHTTEECCBCC--TTTC-S-EEEECCTTSCHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCEEEEEECC-CHHHHHHHHHHHHHCCCEEECCC--CCCC-E-EEEECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 65776279999389-77589999999998898752177--7567-0-4888058899999999999999999864 No 176 >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis H37RV} Probab=99.49 E-value=1.8e-11 Score=95.37 Aligned_cols=323 Identities=15% Similarity=0.118 Sum_probs=177.5 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHHHHHHHHHCCCCCCCCCEEEEEC-CCCH Q ss_conf 8983341567867887888999999999980878888788889889---99999999986488678867078824-8727 Q T0591 37 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGI---RDLLAPRLAAFTGAPVDARDGLIITP-GTQG 112 (406) Q Consensus 37 ~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~L---r~aia~~~~~~~g~~~~~~~~I~it~-G~~~ 112 (406) .+..++|+-| | ..-+|++++++.. ....-..-+.=.+++ -+.+.+.+++.+|.+-+ .+|+++. |++. T Consensus 38 ~p~~~nF~~G-P--s~~p~~Vl~a~~~----~~~~~~eisHRs~ef~~i~~~~~~~L~~l~~~p~~--y~v~~~~GsgT~ 108 (398) T 2fyf_A 38 KPRDGRFGSG-P--SKVRLEQLQTLTT----TAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG--YEVILGNGGATA 108 (398) T ss_dssp SCSSCBCCSS-S--CCCCHHHHHGGGT----TTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT--CEEEEEETCHHH T ss_pred CCCCCCCCCC-C--CCCCHHHHHHHHC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CEEEEECCHHHH T ss_conf 7899996899-8--5889999999864----27653457778879999999999999999689998--679997880899 Q ss_pred HHHHHHHHHHHCCHHHHHHHCCCHHHH--HHHHHHCC--EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC Q ss_conf 899999999720010101310551389--99998299--69998604466677666778899999850254034215666 Q T0591 113 ALFLAVAATVARGDKVAIVQPDYFANR--KLVEFFEG--EMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPN 188 (406) Q Consensus 113 ~l~~~~~~l~~pGd~Vl~~~P~y~~~~--~~~~~~g~--~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~ 188 (406) ++..++..+.+++ +++...++.+.. ...+.++. +....+.+.. . .+. ....+.++++.++.-. T Consensus 109 ~~ea~~~nl~~~k--~l~~~~G~fg~r~~~~~~~~~~~~~~~~~~~~~~--~----~~~-----~~~~~~~~~v~~~h~e 175 (398) T 2fyf_A 109 FWDAAAFGLIDKR--SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPG--S----APE-----PQTDPSVDVIAWAHNE 175 (398) T ss_dssp HHHHHHHHTCSSC--EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTT--C----CCC-----CCCCTTCSEEEEESEE T ss_pred HHHHHHHHCCCCC--CEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCC--C----CCC-----CCCCCCCCEEEEEEEC T ss_conf 9999997404777--4598724688789987775065304566225766--6----656-----2236666716999623 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCC-CCCCCHHHHHH Q ss_conf 43233443789999999986378757841750235568887652233210267868998504001046-31121143325 Q T0591 189 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL-SGYRLGVAFGS 267 (406) Q Consensus 189 NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~GlRiG~~~~~ 267 (406) |-||...+.+ ++++.+++++++|-+-+... .+ +.. ...+ +++.|-.|.++. || +|+++.. T Consensus 176 TstGv~~~~~------~i~~~~~~l~vvD~~ss~~~---~~---id~---~~id--v~~~ssqK~l~~ppG--l~~v~~s 236 (398) T 2fyf_A 176 TSTGVAVAVR------RPEGSDDALVVIDATSGAGG---LP---VDI---AETD--AYYFAPQKNFASDGG--LWLAIMS 236 (398) T ss_dssp TTTTEECCCC------CCTTCC-CEEEEECTTTTTT---SC---CCG---GGCS--EEEECTTSTTCSCSS--EEEEEEC T ss_pred CCCCEEEEEC------CCCCCCCCEEEEECCCCCCC---CC---CCC---CCEE--EEEEECCCCCCCCCC--EEEEEEC T ss_conf 8764033202------00367882699842422467---55---560---0168--899751223546897--4999987 Q ss_pred HHHHHHHHHHHHH--------------------CCCCHHHHHH-HHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999987520--------------------3676124579-9999998565--258999999999999999999972 Q T0591 268 RAIIARMEKLQAI--------------------VSLRAAGYSQ-AVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRG 324 (406) Q Consensus 268 ~~~i~~l~~~~~~--------------------~~~~~~~~~q-~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~ 324 (406) +++++++...... ...+++.... .++..++... ..-+....++.+.+.+.+.+.+.. T Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~a~~l~~~l~~ 316 (398) T 2fyf_A 237 PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE 316 (398) T ss_dssp HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 89996544027887777510123567663023774788727899999999999987034379999999999999999986 Q ss_pred CCCCEEECCCCC----EEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHH Q ss_conf 799455358873----078776688788989999999986891896161026799985899850--99799999999999 Q T0591 325 CEGVFARTPQAG----SYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIV 398 (406) Q Consensus 325 ~~g~~~~~p~gg----~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~ 398 (406) .+++....++-+ .-+-+.+|+ +.+..+|.+. ++++||.+.+|.. .-++..+|+|+- .+.|+++.-++-|. T Consensus 317 ~~~~~~~~~~~~~rS~~v~~~~~p~-~~~~~~~~~~-l~~~gi~~~~Gh~--~l~~~~~Ris~~~~v~~edv~~Li~~le 392 (398) T 2fyf_A 317 RPYTTPFVTDPGLRSQVVGTIDFVD-DVDAGTVAKI-LRANGIVDTEPYR--KLGRNQLRVAMFPAVEPDDVSALTECVD 392 (398) T ss_dssp STTEEESCCSGGGBCSSEEEEEECT-TSCHHHHHHH-HHHTTCBCCSCCT--TTCSSEEEEECCTTSCHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHCCCEEEEEECCC-CCCHHHHHHH-HHHCCCEECCCCH--HCCCCEEEEEECCCCCHHHHHHHHHHHH T ss_conf 7983247799877397189997688-4699999999-9978887602841--0289869997589899999999999999 Q ss_pred HHHHHH Q ss_conf 999985 Q T0591 399 TLVERY 404 (406) Q Consensus 399 ~~~~~~ 404 (406) .+++++ T Consensus 393 ~~~~~l 398 (398) T 2fyf_A 393 WVVERL 398 (398) T ss_dssp HHHHTC T ss_pred HHHHHC T ss_conf 999739 No 177 >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Probab=99.48 E-value=1.1e-09 Score=83.43 Aligned_cols=323 Identities=13% Similarity=0.101 Sum_probs=178.9 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---C-----C------HHH Q ss_conf 9998087888878888988999999999986488678867078824872789999999972---0-----0------101 Q T0591 63 AGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA---R-----G------DKV 128 (406) Q Consensus 63 ~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---p-----G------d~V 128 (406) ..+.......|--+....++-+.+.+|+.+..|.+- . .-++|+|++++...++.+.-+ | | -.| T Consensus 130 ~~~~n~n~~~~~~sP~~t~~E~~vi~~l~~l~G~~~--~-~G~~t~GGS~aNl~al~~AR~~~~~~~~~~g~~~~~~~vv 206 (515) T 2jis_A 130 TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSS--G-DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLAL 206 (515) T ss_dssp HHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSS--C-EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEE T ss_pred HHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC--C-CCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 986365655532376899999999999999819998--7-8625688089999999999998643556506467998189 Q ss_pred HHHHCCCHHHHHHHHHHCCE---EEEEEECCCCCCCCCCCCCHHHHHHHHCCC------CEEEECCCCCCCCCCCCCHHH Q ss_conf 01310551389999982996---999860446667766677889999985025------403421566643233443789 Q T0591 129 AIVQPDYFANRKLVEFFEGE---MVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEE 199 (406) Q Consensus 129 l~~~P~y~~~~~~~~~~g~~---~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPTG~~~s~~~ 199 (406) ++++-++++....+...|.. ++.||++ .++.+|++.|++.+.+. +-+|+.+...-.||++ +. T Consensus 207 ~~S~~aH~Sv~KAa~~lGlg~~~v~~v~~d------~~~~md~~~L~~~I~~~~~~G~~p~~VvataGTT~~Ga~---Dp 277 (515) T 2jis_A 207 FTSKECHYSIQKGAAFLGLGTDSVRVVKAD------ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF---DP 277 (515) T ss_dssp EEETTSCTHHHHHHHHTTSCGGGEEEECBC------TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CC T ss_pred EECCCCHHHHHHHHHHCCCCCCCEEEECCC------CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CC T ss_conf 976866299999999807542425885678------665769999999999998659984699995688776252---50 Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-H-HHHHHHHHHH Q ss_conf 9999999863787578417502355688876522332102678689985040010463112114332-5-8999999987 Q T0591 200 IGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-S-RAIIARMEKL 277 (406) Q Consensus 200 l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~-~~~i~~l~~~ 277 (406) +++|.++|++|++|+-+|-+|+.+..--.....+.. ....-..| ...+.|.++.| +=+|.+.. + ..+....... T Consensus 278 l~eIa~i~~~~~~WlHVDaA~GG~~~~~~~~r~~~~--gi~~aDSi-t~d~HK~l~~p-~~~s~~l~r~~~~l~~~~~~~ 353 (515) T 2jis_A 278 LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLD--GIQRADSV-AWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGS 353 (515) T ss_dssp HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGT--TGGGCSEE-EECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCHHHC--CCCCCCEE-EECCCCCCCCC-CCCEEEEECCHHHHHHHHHCC T ss_conf 999999998638748862432024542744311344--86532313-45643024768-885046642778888775325 Q ss_pred -------H-HH---------CCCCHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCE Q ss_conf -------5-20---------3676124579--99999985652589999999999999999999727994553-588730 Q T0591 278 -------Q-AI---------VSLRAAGYSQ--AVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR-TPQAGS 337 (406) Q Consensus 278 -------~-~~---------~~~~~~~~~q--~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~gg~ 337 (406) . .. .++..+.-.. .+...+..-+.+-.++...+.-+..+.+.+.+++.+++++. .|+-+. T Consensus 354 ~a~YL~~~~~~~~~~~d~~~~t~~~sRr~~alklW~~l~~~G~~G~~~~i~~~~~~A~~l~~~i~~~~~fel~~~p~~~~ 433 (515) T 2jis_A 354 QASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN 433 (515) T ss_dssp ---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEE T ss_conf 76501346766666657333445667662069999999760887899999999999999999983599979967986579 Q ss_pred EEEEECCCC------CCCH--------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHH Q ss_conf 787766887------8898--------9999999986891896161026799985899850---9979999999999999 Q T0591 338 YLFPRLPKL------AVAP--------AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS---QDHEAAVAAARRIVTL 400 (406) Q Consensus 338 ~~w~~~~~~------~~~~--------~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~l~~al~rl~~~ 400 (406) -+|--+|.. ..+. ..+.++|.++ |..+......+. ...++|++++ +++++++..++.|.++ T Consensus 434 VcFr~~p~~l~~~~~~~~~~~~l~~~~~~i~~~l~~~-G~~~v~~t~~~~-~~~~lR~~i~np~tt~~did~l~~~I~~l 511 (515) T 2jis_A 434 VCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPHGT-RGNFFRVVVANSALTCADMDFLLNELERL 511 (515) T ss_dssp EEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEETT-EEEEEEEECCCTTCCHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEECC-CEEEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 9998107444654334468999999999999999961-999998768899-33799999699999999999999999998 Q ss_pred HHH Q ss_conf 998 Q T0591 401 VER 403 (406) Q Consensus 401 ~~~ 403 (406) -++ T Consensus 512 g~~ 514 (515) T 2jis_A 512 GQD 514 (515) T ss_dssp HTT T ss_pred HCC T ss_conf 630 No 178 >1bjn_A PSAT, phosphoserine aminotransferase; L-serine biosynthesis; HET: LLP; 2.30A {Escherichia coli} SCOP: c.67.1.4 PDB: 1bjo_A* Probab=99.43 E-value=1.3e-11 Score=96.31 Aligned_cols=326 Identities=12% Similarity=0.052 Sum_probs=167.3 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----C--CHH---HHHHHHHHHHHHCCCCCCCCCEEEEECCC Q ss_conf 3415678678878889999999999808788887888-----8--988---99999999998648867886707882487 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR-----G--DLG---IRDLLAPRLAAFTGAPVDARDGLIITPGT 110 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~-----G--~~~---Lr~aia~~~~~~~g~~~~~~~~I~it~G~ 110 (406) -||+-| +..-+|.+++++.+.+.+-. .... | .++ +-+.+.+.+.+..|.+- +.+|++++|+ T Consensus 3 ~~F~pG---P~~~p~~V~~a~~~~~~~~~----~~~~s~~~~~HRs~~f~~l~~~~r~~l~~ll~~~~--~~~v~~~~gs 73 (360) T 1bjn_A 3 FNFSSG---PAMLPAEVLKQAQQELRDWN----GLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS--NYKVLFCHGG 73 (360) T ss_dssp EECCSS---SCCCCHHHHHHHHHTSSSGG----GSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT--TEEEEEESSH T ss_pred EEECCC---CCCCCHHHHHHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCEEEEECCH T ss_conf 774698---83889999999999976212----57865444576788999999999999999968999--9789997880 Q ss_pred CHHHHHHHHHHH-HCCHHHHHHHCCCHHHHHHHH--HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC Q ss_conf 278999999997-200101013105513899999--82996999860446667766677889999985025403421566 Q T0591 111 QGALFLAVAATV-ARGDKVAIVQPDYFANRKLVE--FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNP 187 (406) Q Consensus 111 ~~~l~~~~~~l~-~pGd~Vl~~~P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P 187 (406) +++...+..... .+++.+++..-.+........ ..|...+.+... .....+.+.+++.++.+++++.++.. T Consensus 74 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (360) T 1bjn_A 74 GRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKV------TVDGLRAVKPMREWQLSDNAAYMHYC 147 (360) T ss_dssp HHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEE------EETTEEEECCGGGCCCCSSCSCEEEC T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCEEEEHHHHHHHHCCCEEEECCC------CCCCCCCHHHHHHCCCCCCEEEEEEC T ss_conf 899999999850246543135305603532366677626611332035------66776511447760668876999931 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH Q ss_conf 64323344378999999998637875784175023556888765223321026786899850400104631121143325 Q T0591 188 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 188 ~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~ 267 (406) ||-||...+...+ .|+.+++++++|-+-+. .+.+ ..+. ..+ +.+.++||..+.++.=.+++... T Consensus 148 ~~~tg~~~~~~~i-----~~~~~~~~~~VDavqs~---g~~~-idv~-----~~~--~d~~~~~~~k~~~~~~~~~~~~~ 211 (360) T 1bjn_A 148 PNETIDGIAIDET-----PDFGADVVVAADFSSTI---LSRP-IDVS-----RYG--VIYAGAQKNIGPAGLTIVIVRED 211 (360) T ss_dssp SEETTTTEECCCC-----CCCCTTCCEEEECTTTT---TSSC-CCGG-----GCS--EEEEETTTTTSSTTCEEEEEEGG T ss_pred CCCCCCCCCCCCC-----CCCCCCCEEEEEEECCC---CCCC-CCCC-----CCE--EEEEECCCCCCCCCCCCEEEEHH T ss_conf 4665535410200-----13566532688650233---3111-1003-----324--89984244446788752135255 Q ss_pred HH-----------HHHHHHHHHHHCCCCHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 89-----------999999875203676124579999999--85652589999999999999999999727994553588 Q T0591 268 RA-----------IIARMEKLQAIVSLRAAGYSQAVLRGW--FDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 334 (406) Q Consensus 268 ~~-----------~i~~l~~~~~~~~~~~~~~~q~a~~~~--l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 334 (406) .. .......... .....+......+... ............++.+++...+...+..........+. T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360) T 1bjn_A 212 LLGKANIACPSILDYSILNDNGS-MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAK 290 (360) T ss_dssp GCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCG T ss_pred HHHHHCCCCCCCCCHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC T ss_conf 45531022222210345543011-36788764046677888888861118999999999999999985326743158882 Q ss_pred C---CEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf 7---3078776688788989999999986891896161026799985899850--99799999999999999985 Q T0591 335 A---GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 335 g---g~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) . ..-+-+.+++ +.+..++...| .++||.+..|.. . -+.+|+|+. .++|+++.-++-|+++.++| T Consensus 291 ~~rs~~vv~f~~~~-~~~~~~~~~~l-~~~Gi~~~~Gh~--~--~g~~Ris~~~~~t~edi~~Li~~l~e~~~~~ 359 (360) T 1bjn_A 291 RNRSRMNVPFQLAD-SALDKLFLEES-FAAGLHALKGHR--V--VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360) T ss_dssp GGBCSSEEEEEESS-GGGHHHHHHHH-HHTTEECCBCCT--T--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH T ss_pred HHCCCEEEEEECCC-CCCHHHHHHHH-HHCCCEEECCCC--C--CCEEEEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 10083599997899-63599999999-978998742877--5--5758898458999999999999999999963 No 179 >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* Probab=99.31 E-value=1.4e-09 Score=82.57 Aligned_cols=325 Identities=13% Similarity=0.079 Sum_probs=153.0 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC----CCC--CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH Q ss_conf 334156786788788899999999998087888878----888--98899999999998648867886707882487278 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE----YRG--DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 113 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~----~~G--~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~ 113 (406) ..+|+-| +-.-++.+++++.+.+.+-...+=+. ..+ ..++-+.+.+.+.+.+|.+- +..|++++|++.+ T Consensus 4 ~~nF~pG---P~~~p~~Vlea~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~e~r~~l~~~~~~~~--~~~i~~~~gt~~~ 78 (360) T 1w23_A 4 VFNFNAG---PSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPN--DYQILFLQGGASL 78 (360) T ss_dssp CEECCSS---SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT--TEEEEEESSHHHH T ss_pred EEEECCC---CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCEEEEECCCHHH T ss_conf 3570798---8588999999999999764047865444676788999999999999999968999--8789994887899 Q ss_pred HHHHHHHH-HHCCHHHHHHHCCCHHHHHHHH--HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 99999999-7200101013105513899999--82996999860446667766677889999985025403421566643 Q T0591 114 LFLAVAAT-VARGDKVAIVQPDYFANRKLVE--FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNP 190 (406) Q Consensus 114 l~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NP 190 (406) ...+.... ..+++.+++......+...... ..+...+....+. ....+++.+ ...++...++.-+|- T Consensus 79 ~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~n~ 148 (360) T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKA------NSYQSIPDF----SEFQLNENDAYLHIT 148 (360) T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGG------GTSCSCCCG----GGCCCCTTEEEEEEE T ss_pred HHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHCCCEEECCCC------CCCCCCCCC----CCCCCCCCCCCEEEE T ss_conf 9999976412578865155312044334788887640321102344------576630000----123433432100352 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHH Q ss_conf 23344378999999998637875784175023556888765223321026786899850400104631121143325899 Q T0591 191 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 270 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~ 270 (406) ||.+.+ +.+|.++|+++|+++|+|-+-+.. +.+ +... .. -+.+.|++|.++.||. .|.++..+.. T Consensus 149 tG~~~~---i~~I~~i~~~~~~l~ivDavqs~g---~~~---id~~---~~--~~d~~~~~k~~~~~~~-~~~~~~~~~~ 213 (360) T 1w23_A 149 SNNTIY---GTQYQNFPEINHAPLIADMSSDIL---SRP---LKVN---QF--GMIYAGAQKNLGPSGV-TVVIVKKDLL 213 (360) T ss_dssp SEETTT---TEECSSCCCCCSSCEEEECTTTTT---SSC---CCGG---GC--SEEEEETTTTTSCTTC-EEEEEEHHHH T ss_pred CCEEEC---CCCEEEECCCCCEEEEEEECCCCC---CCC---CCCC---CC--CEEEEECCCCCCCCCC-CCEEEECHHH T ss_conf 667722---431232013442158761011335---554---3223---44--2035402433345665-4035601334 Q ss_pred ------------HHHHHHHHHHCCCCHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE--C Q ss_conf ------------999998752036761245799999----9985652589999999999999999999727994553--5 Q T0591 271 ------------IARMEKLQAIVSLRAAGYSQAVLR----GWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR--T 332 (406) Q Consensus 271 ------------i~~l~~~~~~~~~~~~~~~q~a~~----~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~--~ 332 (406) ........+... ..+.....++. ....... ......+.+..+................ . T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360) T 1w23_A 214 NTKVEQVPTMLQYATHIKSDSLYN-TPPTFSIYMLRNVLDWIKDLGG--AEAIAKQNEEKAKIIYDTIDESNGFYVGHAE 290 (360) T ss_dssp CSCCTTCCGGGCHHHHHHTTTCSS-CCCHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHTTTTSSEESSC T ss_pred HCCCCCCCCCHHHHHHHHHHCCCC-CCCCEEEHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 224631122123566764210022-1001000113567766541100--3789999999987778887744554147788 Q ss_pred CCC--CEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH Q ss_conf 887--3078776688788989999999986891896161026799985899850--9979999999999999998 Q T0591 333 PQA--GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVER 403 (406) Q Consensus 333 p~g--g~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~ 403 (406) ++. -.-+.+.+++ +..+.++... ++++||.+..|... . +-+|+|+- .+.|+++.-++-|++|.++ T Consensus 291 ~~~rS~~vv~f~~~~-~~~~~~~~~~-l~~~Gi~~~~Ghr~--~--g~vRiS~~~~~t~e~v~~L~~~~~~~~~~ 359 (360) T 1w23_A 291 KGSRSLMNVTFNLRN-EELNQQFLAK-AKEQGFVGLNGHRS--V--GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360) T ss_dssp GGGBCSSEEEEECSS-HHHHHHHHHH-HHHTTEESCBCCTT--T--CSEEEECCTTSCHHHHHHHHHHHHHHHHH T ss_pred HHHCCEEEEEEECCC-CCCHHHHHHH-HHHCCCEEECCCCC--C--CEEEEEECCCCCHHHHHHHHHHHHHHHHC T ss_conf 423614799998699-7468999999-99789866307776--6--70789943899999999999999999856 No 180 >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomics initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus HB8} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Probab=99.23 E-value=1.8e-08 Score=75.11 Aligned_cols=318 Identities=17% Similarity=0.165 Sum_probs=170.6 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 56786788788899999999998087888878-----8889889999999999864886788670788248727899999 Q T0591 44 SHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE-----YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 118 (406) Q Consensus 44 s~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~-----~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~ 118 (406) +.|.-+...| | .++.+.. +..-.+.|+| ++|..++.-....++....|.++.. .-.-.|++.....++ T Consensus 70 g~G~~~~~~p-~-~i~~~~~--~~~~~t~ytPyq~E~sQG~Lq~l~e~q~~l~eltGmd~~n---~s~~~ga~~~~~~~~ 142 (438) T 1wyu_A 70 GGGVRSHHVP-P-VVQALAA--RGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIAN---ASMYDGATALAEGVL 142 (438) T ss_dssp CSSCCCCCCC-H-HHHHHHT--SHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEEC---SCBSSHHHHHHHHHH T ss_pred CCCCCCCEEC-H-HHHHHHH--CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHH T ss_conf 7776784117-8-9998875--9355754898406677999999999999999852876246---685078899999999 Q ss_pred HHHHH-CCHHHHHHHCCCHHHHHH----HHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 99972-001010131055138999----9982996999860446667766677889999985025403421566643233 Q T0591 119 AATVA-RGDKVAIVQPDYFANRKL----VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGV 193 (406) Q Consensus 119 ~~l~~-pGd~Vl~~~P~y~~~~~~----~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~ 193 (406) .+.-. ....+++..-.++.+... +...|.+++.++.+.. ..+. ..+.+++.++++.||| -.|. T Consensus 143 ~~~~~~~~~~~~~~~~~~p~~~~v~~a~a~~~g~~vv~~~~~~~-------~~~~----~~~~~~~A~vmit~Pn-t~G~ 210 (438) T 1wyu_A 143 LALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGG-------RTPL----PEVGEEVGAVVVQNPN-FLGA 210 (438) T ss_dssp HHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTT-------BCCC----CCCCTTEEEEEEESSC-TTSB T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-------CCHH----HHCCCCEEEEEECCCC-CCCE T ss_conf 87631133220234657878898877666533854776210246-------3124----5427765999963677-7563 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC----CCCCHHHHHHHH Q ss_conf 4437899999999863787578417502355688876522332102678689985040010463----112114332589 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAFGSRA 269 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~~~~~~ 269 (406) . ++++++++++++.|.+++.| +. +. ...-+..++....| |++++ .|.|+.| |=-.|++++.++ T Consensus 211 ~---e~~~~i~~~~h~~g~l~~~~-an--~~----al~~l~~Pge~GaD--iv~g~-~q~fg~p~~~GGP~~G~~a~~~~ 277 (438) T 1wyu_A 211 L---EDLGPFAEAAHGAGALFVAV-AD--PL----SLGVLKPPGAYGAD--IAVGD-GQSLGLPMGFGGPHFGFLATKKA 277 (438) T ss_dssp C---CCHHHHHHHHHHTTCEEEEE-CC--TT----GGGTBCCHHHHTCS--EEEEE-CTTTTCCCGGGCSCCEEEEECGG T ss_pred E---CCHHHHHHHHHCCCCEEEEH-HH--HH----HHCCCCCCCCCCCC--EEEEC-CCEECCCCCCCCCCCCCCCCCCH T ss_conf 0---33489999860256247530-04--77----64264366656765--58723-63121565567676543013324 Q ss_pred HH----------------------------HHHHHHHHHCCCCHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99----------------------------9999875203676124--57999999985652589999999999999999 Q T0591 270 II----------------------------ARMEKLQAIVSLRAAG--YSQAVLRGWFDEAPGWMEDRIARHQAIRDELL 319 (406) Q Consensus 270 ~i----------------------------~~l~~~~~~~~~~~~~--~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~ 319 (406) +. +..++-+....++.+. ..-.+...+.-.+.+=+++.-++...+...+. T Consensus 278 ~~r~lPgrivg~~~d~~G~~~~~l~lqtreqhirrekatsnict~q~l~al~a~~Y~~~~G~eGL~~ia~~a~~~A~yl~ 357 (438) T 1wyu_A 278 FVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLH 357 (438) T ss_dssp GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 32158764455543347862201111445554555433100336778999999998765042139999999999999999 Q ss_pred HHHHHCCCCEEECCCCCEE--EEEECCCCCCCHHHHHHHHHHHCCEEEEECCC-CCCCCCCEEEEEEC--CCHHHHHHHH Q ss_conf 9997279945535887307--87766887889899999999868918961610-26799985899850--9979999999 Q T0591 320 HVLRGCEGVFARTPQAGSY--LFPRLPKLAVAPAEFVKILRLQAGVVVTPGTE-FSPHTADSVRLNFS--QDHEAAVAAA 394 (406) Q Consensus 320 ~~L~~~~g~~~~~p~gg~~--~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~-Fg~~~~~~iRis~~--~~~e~l~~al 394 (406) +.|.+++|+....+. .+| +-+++ +.+..+++++|+ ++|+.. |.. |....++.+-+++. .+.++|+.-+ T Consensus 358 ~~L~~~~g~~~~~~~-~~f~Ef~~~~---~~~a~di~k~l~-d~G~~~--~~~~~~~~~~~~lli~~TEt~tkeeiD~~i 430 (438) T 1wyu_A 358 ALLLEVPGVRPFTPK-PFFNEFALAL---PKDPEAVRRALA-ERGFHG--ATPVPREYGENLALFAATELHEEEDLLALR 430 (438) T ss_dssp HHHTTSTTCEECSCS-SBCSEEEEEC---SSCHHHHHHHHH-HTTCCC--CEECCTTSCSSEEEEECCTTCCHHHHHHHH T ss_pred HHHHHCCCCEECCCC-CEEEEEEEEC---CCCHHHHHHHHH-HCCCCC--CCCCCCCCCCCEEEEECCCCCCHHHHHHHH T ss_conf 986544890404899-7115899978---999999999999-679988--866656779995999479899999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q T0591 395 RRIVTL 400 (406) Q Consensus 395 ~rl~~~ 400 (406) +.|++. T Consensus 431 ~al~ei 436 (438) T 1wyu_A 431 EALKEV 436 (438) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 181 >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* Probab=99.22 E-value=1.7e-09 Score=82.04 Aligned_cols=323 Identities=14% Similarity=0.123 Sum_probs=163.7 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCC-------CHH---HHHHHHHHHHHHCCCCCCCCCEEEEEC Q ss_conf 334156786788788899999999998087888878-888-------988---999999999986488678867078824 Q T0591 40 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE-YRG-------DLG---IRDLLAPRLAAFTGAPVDARDGLIITP 108 (406) Q Consensus 40 ~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~-~~G-------~~~---Lr~aia~~~~~~~g~~~~~~~~I~it~ 108 (406) ..+|+-| +-.-++.+++++.+.+.. |.. ..| .++ +-+.+.+.+++.++.+- +..|++++ T Consensus 5 ~~~F~PG---P~~~p~~V~~a~~~~~~~-----~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~--~~~v~~~~ 74 (362) T 2c0r_A 5 AYNFNAG---PAALPLEVLERAQAEFVD-----YQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPT--GYKVLFIQ 74 (362) T ss_dssp CEECCSS---SCCCCHHHHHHHHHTSSS-----STTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCS--SEEEEEES T ss_pred CCCCCCC---CCCCCHHHHHHHHHHHHH-----HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCEEEEEC T ss_conf 7575589---889999999999998652-----2046864334477898999999999999999968999--87899966 Q ss_pred CCCHHH-HHHHHHHHHCCHHHHHHHCCCH--HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECC Q ss_conf 872789-9999999720010101310551--3899999829969998604466677666778899999850254034215 Q T0591 109 GTQGAL-FLAVAATVARGDKVAIVQPDYF--ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS 185 (406) Q Consensus 109 G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~--~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 185 (406) |+..+. ..+...+..+|+.|++..-... .....++..|..+..+..... ...+.+.+++.....+ ...+ T Consensus 75 gsgt~~~ea~~~~l~~~~~~v~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~- 146 (362) T 2c0r_A 75 GGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEAS------NYMTLPKLQEIQLQDN-AAYL- 146 (362) T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGG------TTCSCCCGGGCCCCTT-EEEE- T ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCEECHHHHHHHHCCCCEEEECCCCC------CCCCHHHHHHHHCCCC-CCEE- T ss_conf 8841899999861456787322662262002026766532750011012333------3452342676513577-5069- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHH Q ss_conf 66643233443789999999986378757841750235568887652233210267868998504001046311211433 Q T0591 186 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 265 (406) Q Consensus 186 ~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~ 265 (406) +|-||.+.+.. ++.++|+++++++++|.+-+. .+.+. ... ..+ +.+.|.+|.++.||. .++++ T Consensus 147 --~~~t~~~~~~~---~i~~~~~~~~~l~~vDa~ss~---~~~~i---d~~---~~d--v~~~~sqK~~~~p~g-~~~~~ 209 (362) T 2c0r_A 147 --HLTSNETIEGA---QFKAFPDTGSVPLIGDMSSDI---LSRPF---DLN---QFG--LVYAGAQKNLGPSGV-TVVIV 209 (362) T ss_dssp --EEESEETTTTE---ECSSCCCCTTSCEEEECTTTT---TSSCC---CGG---GCS--EEEEETTTTTCCSSC-EEEEE T ss_pred --EEECCCCCCCE---EEEEECCCCCCEEEEEECCCC---CCCCC---CCC---CCC--EEEEECCCCCCCCCC-CEEEE T ss_conf --96025444221---686511467833898522543---21034---444---453--379960422003787-17997 Q ss_pred HHHHHHH------------HHHHHHHHCCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE- Q ss_conf 2589999------------99987520367612457999999985--65258999999999999999999972799455- Q T0591 266 GSRAIIA------------RMEKLQAIVSLRAAGYSQAVLRGWFD--EAPGWMEDRIARHQAIRDELLHVLRGCEGVFA- 330 (406) Q Consensus 266 ~~~~~i~------------~l~~~~~~~~~~~~~~~q~a~~~~l~--~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~- 330 (406) .++++.+ ...+... ....+++....+....+. ....-......++++++..+............ T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (362) T 2c0r_A 210 REDLVAESPKHLPTMLRYDTYVKNNS-LYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG 288 (362) T ss_dssp EGGGSSSCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE T ss_pred EHHHHHHCCCCCCCCCCHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 78987516555323230355531000-14554220112221367666402428899998888887665554215654345 Q ss_pred -ECCC--CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH Q ss_conf -3588--73078776688788989999999986891896161026799985899850--99799999999999999985 Q T0591 331 -RTPQ--AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 404 (406) Q Consensus 331 -~~p~--gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~~~~~~~ 404 (406) ..++ ...-+-+.+|+ +.+..++...| ++.||.+..|. +..+ .+|+|+. .++|++++-++.|+++.+++ T Consensus 289 ~~~~~~rS~~v~~f~~~~-~~~~~~~~~~l-~~~Gi~~~~G~--~~~g--~~Ris~~~~~t~edv~~Li~~l~~~~~~~ 361 (362) T 2c0r_A 289 CVDVDSRSDMNITFRLAS-EELEKEFVKAS-EQEGFVGLKGH--RSVG--GLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362) T ss_dssp SSCGGGBCSSEEEEECSC-HHHHHHHHHHH-HHTTEESCBCC--TTTC--SEEEECCTTSCHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHCCCEEEEEECCC-CCCHHHHHHHH-HHCCCEECCCC--CCCC--EEEEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 668432564389997688-22599999999-97888732698--8578--38898148899999999999999999965 No 182 >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomics initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus HB8} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Probab=99.04 E-value=2.5e-07 Score=67.43 Aligned_cols=366 Identities=15% Similarity=0.134 Sum_probs=180.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC----- Q ss_conf 46888714666615789988788999996303-789833415678678878889999999999808788887888----- Q T0591 4 EAKFKKLGTDNAPGQEVRQSAAGLEALIRGAP-IEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR----- 77 (406) Q Consensus 4 ~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~----- 77 (406) ++.+++-.....|..+-.+..+.+..+++... .....+-++.+ +...+ |.+.+.+.+ -.+.|.|.+ T Consensus 31 P~~~~~~~~~~LP~~sE~El~r~l~~la~kN~~~~~~~~g~G~~--~~hy~-P~v~~~~~~-----~yTaYTPYQPaEiS 102 (474) T 1wyu_B 31 PKEHLREVPPRLPEVDELTLVRHYTGLSRRQVGVDTTFYPLGSC--TMKYN-PKLHEEAAR-----LFADLHPYQDPRTA 102 (474) T ss_dssp CGGGBCSSCCCCCCCCHHHHHHHHHHHHTTCCCTTTSCCCBTTT--CCCCC-CHHHHHHHH-----TTSSCCTTSCGGGC T ss_pred CHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCC-CCCCCHHHH-----HHHCCCCCCCHHHH T ss_conf 99887179999999899999999999995777844353677232--56537-302215788-----87454989985775 Q ss_pred -CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH---HHCCH----HHHHHHCCCHH-HHHHHHHHCCE Q ss_conf -89889999999999864886788670788248727899999999---72001----01013105513-89999982996 Q T0591 78 -GDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT---VARGD----KVAIVQPDYFA-NRKLVEFFEGE 148 (406) Q Consensus 78 -G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l---~~pGd----~Vl~~~P~y~~-~~~~~~~~g~~ 148 (406) |..+..-.-...+....|.++. |.-.-.|+|..-..+.++. -..|. .+....+.+.. ........+.. T Consensus 103 QG~LQalfEfQtmi~eLTGMdva---NaS~yDgatA~aEA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (474) T 1wyu_B 103 QGALRLMWELGEYLKALTGMDAI---TLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQ 179 (474) T ss_dssp HHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEE T ss_conf 99999999999999999588855---667611899999999987777764377532444567753101001122024405 Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC Q ss_conf 99986044666776667788999998502540342156664323344378999999998637875784175023556888 Q T0591 149 MVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA 228 (406) Q Consensus 149 ~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~ 228 (406) .+.++.+ .....+.+.+.......+.++++.+||+ .|..- +..+.+.+++++++..+++|-+-.-+. T Consensus 180 ~v~~~~~------~~~~~~~~~~~~~~~~~~a~~~v~~p~~-~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 246 (474) T 1wyu_B 180 VREIPSG------PEGEVDLEALKRELGPHVAALMLTNPNT-LGLFE--RRILEISRLCKEAGVQLYYDGANLNAI---- 246 (474) T ss_dssp EEEECBC------TTSSBCHHHHHHHCSTTEEEEEECSSCT-TSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGT---- T ss_pred EECCCCC------CCCHHHHHHHHHHHHHCCCCCEECCCCC-CCCCC--CHHHHHHHHHHHCCCCEEEEECCHHHH---- T ss_conf 6303431------0000012456665410133521025787-77544--218899999875077504542122443---- Q ss_pred CCCCHHHHHCCCCCCEEEEEECCHHCCCC----CCCCHHHHHHHHHHHHHH----------------HHHHH--CCCCHH Q ss_conf 76522332102678689985040010463----112114332589999999----------------87520--367612 Q T0591 229 SYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAFGSRAIIARME----------------KLQAI--VSLRAA 286 (406) Q Consensus 229 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~~~~~~~i~~l~----------------~~~~~--~~~~~~ 286 (406) ..+...+.... .+++.+..+.||+| |--+|+++..+++++.+- +-+.. ...|++ T Consensus 247 --l~l~~pg~~g~--d~iv~g~~q~~G~p~g~GGP~~G~~a~~~~l~R~~PGRivg~g~~~~~ltlqreq~i~~~~~ctn 322 (474) T 1wyu_B 247 --MGWARPGDMGF--DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYG 322 (474) T ss_dssp --TTTCCHHHHTC--SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTS T ss_pred --HCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCEECCCHH T ss_conf --10446765346--64212211000333566745530433103340258887420477444446887665530042230 Q ss_pred H-HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEE--EEEECCCCCCCHHHHHHHHHHHCC Q ss_conf 4-5799999998-56525899999999999999999997279945535887307--877668878898999999998689 Q T0591 287 G-YSQAVLRGWF-DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSY--LFPRLPKLAVAPAEFVKILRLQAG 362 (406) Q Consensus 287 ~-~~q~a~~~~l-~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~--~w~~~~~~~~~~~~~~~~Ll~~~g 362 (406) . +.-.++..++ -.+.+=+++.-.....+..++.+.|.. .|++... ++-|| +-++++ .+.+..++.++|++ +| T Consensus 323 qaL~al~a~vYl~~lG~~GL~~iA~~~~~~A~Yl~~~L~~-~G~~~~~-~~~ff~EFv~~~~-~~v~~~~i~k~L~~-~G 398 (474) T 1wyu_B 323 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPY-DGPSMHEFVAQPP-EGFRALDLAKGLLE-LG 398 (474) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSS-CSSCCSCEEEBCS-TTCCHHHHHHHHHH-TT T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCC-CCCEEEEEEECCC-CCCCHHHHHHHHHH-CC T ss_conf 4999999999998818566767579999999999998765-4933155-6652467522378-89989999999986-59 Q ss_pred EEEEECCCCCCC-CCCEEEEEEC--CCHHHHHHHHHHHHHHHHH Q ss_conf 189616102679-9985899850--9979999999999999998 Q T0591 363 VVVTPGTEFSPH-TADSVRLNFS--QDHEAAVAAARRIVTLVER 403 (406) Q Consensus 363 V~v~pG~~Fg~~-~~~~iRis~~--~~~e~l~~al~rl~~~~~~ 403 (406) +. +|....+. .++.+=++.. .+.++|+.-++.|++++++ T Consensus 399 ~~--~~~~~~P~~~~~~lli~vTE~~tkeeID~lv~aL~~i~~e 440 (474) T 1wyu_B 399 FH--PPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474) T ss_dssp CC--CCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS T ss_pred CC--CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 98--8756676778996999727889999999999999999984 No 183 >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomics, structural genomics consortium, SGC, alternative splicing, amino-acid biosynthesis; HET: PLP; 2.50A {Homo sapiens} Probab=98.74 E-value=4.5e-06 Score=58.86 Aligned_cols=333 Identities=11% Similarity=0.049 Sum_probs=155.9 Q ss_pred EEECCCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCC---CCCCHHH---HHHHHHHHHHHCCCCCCCCCEEEEE-CCCC Q ss_conf 34156786788--788899999999998087888878---8889889---9999999998648867886707882-4872 Q T0591 41 VDFSHGDVDAH--EPTPGAFDLFSAGVQSGGVQAYTE---YRGDLGI---RDLLAPRLAAFTGAPVDARDGLIIT-PGTQ 111 (406) Q Consensus 41 i~ls~G~pd~~--~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~L---r~aia~~~~~~~g~~~~~~~~I~it-~G~~ 111 (406) +||+.-+.-+. .|. .+++.+.+.+.+-.-.|.+- +.=.+++ -+.+.+.++..++++-+ -+|++. .|+| T Consensus 11 ~~~~~~~~~~~s~lP~-~vl~~~~~~~~~~~~~g~sileisHRs~eF~~l~~~~~~~Lr~ll~~p~~--y~vl~l~GsgT 87 (377) T 3e77_A 11 VDLGTENLYFQSMLPH-SVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN--YKVIFLQGGGC 87 (377) T ss_dssp ----CCCEECSCCCCH-HHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT--EEEEEESSHHH T ss_pred CCCCCHHHHHHCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CEEEEECCCHH T ss_conf 5656134444113989-99999999986137988531126889878999999999999999689999--77999888589 Q ss_pred HHHHHHHHHHHHCC--HHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCC Q ss_conf 78999999997200--1010131055138999998299699986044666776667788999998502540342156664 Q T0591 112 GALFLAVAATVARG--DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNN 189 (406) Q Consensus 112 ~~l~~~~~~l~~pG--d~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N 189 (406) .++..++..++.++ +.+.+..-+.... ..+..++.....+.... .+......++..+....+....+..++.+. T Consensus 88 ~a~ea~~~nl~~~~~~~~v~~~~~G~~~~-k~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 163 (377) T 3e77_A 88 GQFSAVPLNLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHP---KLGSYTKIPDPSTWNLNPDASYVYYCANET 163 (377) T ss_dssp HHHHHHHHHHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSC---CCSSSCSCCCGGGCCCCTTCSCEEEESEET T ss_pred HHHHHHHHHCCCCCCCCEEEEEEECHHHH-HHHHHHHHHCCCCCCCC---CCCCCCCCCCHHHHCCCCCCEEEECCCCEE T ss_conf 99999999632446776889997886999-99999987286531342---001465567767643687744764045503 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHH Q ss_conf 32334437899999999863787578417502355688876522332102678689985040010463112114332589 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRA 269 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~ 269 (406) -+|.... ..++.++..+|+|-+=+.. +.+. .+. ..+ +++.|-.|.+++||. +++++.++. T Consensus 164 ~~~~~~~--------~~~~~~~~~liVD~vSs~g---~~pi-d~~-----~~D--v~~a~sQK~lg~pgg-~~~i~~s~~ 223 (377) T 3e77_A 164 VHGVEFD--------FIPDVKGAVLVCDMSSNFL---SKPV-DVS-----KFG--VIFAGAQKNVGSAGV-TVVIVRDDL 223 (377) T ss_dssp TTTEECS--------SCCCCTTCCEEEECTTTTT---SSCC-CGG-----GCS--EEEEEGGGTTSCTTC-EEEEEETTS T ss_pred EECCEEE--------EECCCCCCEEEEECCCHHC---CCCC-CCC-----CEE--EEEEECCCCCCCCCC-EEEEEEHHH T ss_conf 6513033--------2037888627763252003---6666-677-----403--999833101488884-599986475 Q ss_pred ----------HHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC--CC Q ss_conf ----------999999875203676-1245799999998565--25899999999999999999997279945535--88 Q T0591 270 ----------IIARMEKLQAIVSLR-AAGYSQAVLRGWFDEA--PGWMEDRIARHQAIRDELLHVLRGCEGVFART--PQ 334 (406) Q Consensus 270 ----------~i~~l~~~~~~~~~~-~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~--p~ 334 (406) ........+.....+ +++..-.++..+++.. +.-++...++.+++...+.+.+....++.... |. T Consensus 224 ~~~~~~~~~~~~~y~~~~~~~s~~~Tpp~~~i~~l~~~L~~~~~~Gg~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 303 (377) T 3e77_A 224 LGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQ 303 (377) T ss_dssp CSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGG T ss_pred HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH T ss_conf 32113457603667776532221578876459999999999876076789999999999999999862576445778965 Q ss_pred --CCEEEEEECCCCCCCH---HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHHHC Q ss_conf --7307877668878898---999999998689189616102679998589985--0997999999999999999856 Q T0591 335 --AGSYLFPRLPKLAVAP---AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF--SQDHEAAVAAARRIVTLVERYR 405 (406) Q Consensus 335 --gg~~~w~~~~~~~~~~---~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~~~e~l~~al~rl~~~~~~~r 405 (406) .-.-+-.+++....++ ..|... +.++|+....|.. ..+ + +|++. +.+.|+++.-++-|++|.+++| T Consensus 304 ~RS~t~v~f~~~~~~~~~~l~~~fl~~-~~~~G~~~lkGhr--~vg-g-~RIs~~~ai~~e~v~~L~~~m~~f~~~~~ 376 (377) T 3e77_A 304 NRSKMNIPFRIGNAKGDDALEKRFLDK-ALELNMLSLKGHR--SVG-G-IRASLYNAVTIEDVQKLAAFMKKFLEMHQ 376 (377) T ss_dssp GBCSSEEEEEESSTTCCHHHHHHHHHH-HHHTTEESCBCCT--TTC-S-EEEECCTTSCHHHHHHHHHHHHHHHHHHC T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHH-HHHCCCCCCCCCC--CCC-E-EEEEECCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 578887899717986537899999999-9977882466877--577-6-78982687899999999999999999708 No 184 >3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* Probab=91.15 E-value=0.68 Score=23.82 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=57.8 Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHH---CCH---H-----------H-HHHHCCCHHHHHHHHHHCCEEEEEEEC Q ss_conf 488678867078824872789999999972---001---0-----------1-013105513899999829969998604 Q T0591 94 TGAPVDARDGLIITPGTQGALFLAVAATVA---RGD---K-----------V-AIVQPDYFANRKLVEFFEGEMVPVQLD 155 (406) Q Consensus 94 ~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---pGd---~-----------V-l~~~P~y~~~~~~~~~~g~~~v~v~~~ 155 (406) |-+.+++ +.|.|+..+..|++..+++|.. .+. . + +...|-| ...++.+| T Consensus 124 Y~L~i~~-~~i~I~a~~~~G~~yg~~Tl~QL~~~~~~~~~~~~~~~~~lp~~~I~D~P~f------------~~RG~mlD 190 (525) T 3gh5_A 124 YDLITTS-NQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEY------------EYRGLMLD 190 (525) T ss_dssp EEEEECS-SEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSC------------SEEEEEEE T ss_pred EEEEEEC-CEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC------------CEECCEEC T ss_conf 4999708-9489997669999999999999976301345323465433453588877887------------72063531 Q ss_pred CCCCCCCCCCCCHHHHHHHHCC------CCEEEECC-----------CC-----------CCCCCCCCCHHHHHHHHHHH Q ss_conf 4666776667788999998502------54034215-----------66-----------64323344378999999998 Q T0591 156 YVSADETRAGLDLTGLEEAFKA------GARVFLFS-----------NP-----------NNPAGVVYSAEEIGQIAALA 207 (406) Q Consensus 156 ~~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~-----------~P-----------~NPTG~~~s~~~l~~i~~~a 207 (406) .. +.-+.++.+++.++. +.--+-++ .| .+..|..||.+++++|++.| T Consensus 191 ~a-----R~~~~~~~ik~~Id~ma~~K~N~lhlHl~D~~~~~~e~~~~p~l~~~~~~~~~~~~~~g~yT~~d~~~lv~yA 265 (525) T 3gh5_A 191 VA-----RHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQEQFKDIVSYA 265 (525) T ss_dssp CS-----SSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHH T ss_pred CC-----CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 68-----7779999999999999972898689999705664201330077775311157688888704699999999999 Q ss_pred HHCCCEEE Q ss_conf 63787578 Q T0591 208 ARYGATVI 215 (406) Q Consensus 208 ~~~~~~ii 215 (406) +++++-|| T Consensus 266 ~~~gI~iI 273 (525) T 3gh5_A 266 AERYIEVI 273 (525) T ss_dssp HTTTCEEE T ss_pred HHCCCEEE T ss_conf 98699996 No 185 >2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A* Probab=91.13 E-value=0.67 Score=23.85 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=61.4 Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHH---CC-H-HH------HHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCC Q ss_conf 488678867078824872789999999972---00-1-01------0131055138999998299699986044666776 Q T0591 94 TGAPVDARDGLIITPGTQGALFLAVAATVA---RG-D-KV------AIVQPDYFANRKLVEFFEGEMVPVQLDYVSADET 162 (406) Q Consensus 94 ~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---pG-d-~V------l~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~ 162 (406) |.+.+++ +.|.|+..+..|++-.+++|.. .. + .+ +...|.| ...++.+|.. T Consensus 94 Y~L~i~~-~~i~I~a~~~~G~~yg~~TL~QL~~~~~~~~~~~p~~~I~D~P~f------------~~RG~mlD~a----- 155 (507) T 2gjx_A 94 YTLTIND-DQCLLLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRF------------PHRGLLLDTS----- 155 (507) T ss_dssp EEEEESS-SCEEEEESSHHHHHHHHHHHHHHEEECTTCCEEEECEEEEECCSC------------SEEEEEEETT----- T ss_pred EEEEEEC-CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCCC------------CCCCEEEECC----- T ss_conf 4999827-948999688999999999999998735478553055589854788------------7125478637----- Q ss_pred CCCCCHHHHHHHHCC------CCEEEEC-----------CCC-------CCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 667788999998502------5403421-----------566-------64323344378999999998637875784 Q T0591 163 RAGLDLTGLEEAFKA------GARVFLF-----------SNP-------NNPAGVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 163 ~~~~d~~~l~~~~~~------~~k~i~l-----------~~P-------~NPTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) +..+.++.+++.++. ++--+-+ ..| .+|.+..||.+++++|++.|+++++-||- T Consensus 156 R~~~~~~~ik~~id~ma~~KlN~lhlHl~Dd~~~r~e~~~~P~l~~~ga~~~~~~~YT~~di~elv~yA~~rgI~vIP 233 (507) T 2gjx_A 156 RHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507) T ss_dssp TSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 675589999999999998289569999730566545555562121147768888884999999999999975978986 No 186 >1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A* Probab=89.92 E-value=0.87 Score=23.11 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=56.1 Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHH---CC---HH-----------HHHHHCCCHHHHHHHHHHCCEEEEEEECC Q ss_conf 488678867078824872789999999972---00---10-----------10131055138999998299699986044 Q T0591 94 TGAPVDARDGLIITPGTQGALFLAVAATVA---RG---DK-----------VAIVQPDYFANRKLVEFFEGEMVPVQLDY 156 (406) Q Consensus 94 ~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---pG---d~-----------Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~ 156 (406) |-+.+++ +.|.|+.++..|++-.+++|.. .+ +. .+...|-| ...++.+|. T Consensus 100 Y~L~i~~-~~i~I~a~~~~G~~yg~~Tl~Qll~~~~~~~~~~~~~~~ip~~~I~D~P~~------------~~RG~mLD~ 166 (512) T 1jak_A 100 YRLDSGP-AGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRY------------AWRSAMLDV 166 (512) T ss_dssp EEEEEET-TEEEEEESSHHHHHHHHHHHHHHSCGGGGCSSCCCCCCEECCEEEEECCSC------------SEEEEEEEC T ss_pred EEEEEEC-CEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC------------CCCCEEEEC T ss_conf 4999818-918999767999999999999997765404655566420253478765787------------611547874 Q ss_pred CCCCCCCCCCCHHHHHHHHCC--CCE----EEECC-----------CC-----------CCCCCCCCCHHHHHHHHHHHH Q ss_conf 666776667788999998502--540----34215-----------66-----------643233443789999999986 Q T0591 157 VSADETRAGLDLTGLEEAFKA--GAR----VFLFS-----------NP-----------NNPAGVVYSAEEIGQIAALAA 208 (406) Q Consensus 157 ~~~~~~~~~~d~~~l~~~~~~--~~k----~i~l~-----------~P-----------~NPTG~~~s~~~l~~i~~~a~ 208 (406) . +..+..+.|++.++. .-| -+-++ .| .++.+..||.+++++|++.|+ T Consensus 167 a-----R~f~~~~~lk~~id~ma~~KlN~lh~HltDd~~~r~e~~~~p~l~~~~~~~~~~~~~~~~YT~~di~elv~yA~ 241 (512) T 1jak_A 167 S-----RHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAA 241 (512) T ss_dssp S-----SSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHH T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 7-----88768999999999999808945899962687632343356345312665556888777358999999999999 Q ss_pred HCCCEEEE Q ss_conf 37875784 Q T0591 209 RYGATVIA 216 (406) Q Consensus 209 ~~~~~ii~ 216 (406) ++++-||- T Consensus 242 ~rgI~vIP 249 (512) T 1jak_A 242 SRHLEVVP 249 (512) T ss_dssp HTTCEEEE T ss_pred HHCCCCCC T ss_conf 80986232 No 187 >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Probab=86.88 E-value=1.3 Score=21.81 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=29.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC Q ss_conf 323344378999999998637875784175023556 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406) |....-+.++++++++-|+++|+-||.|-+|.+..- T Consensus 195 ~d~~yGt~~dfk~LV~~aH~~GI~VIlDvV~NHt~~ 230 (618) T 3m07_A 195 PHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP 230 (618) T ss_dssp ECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSCCCS T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 788889999999999999877999998323455668 No 188 >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Probab=85.97 E-value=1.5 Score=21.50 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=59.8 Q ss_pred HHCCH--HHHHHHCCCHHHHHHHHHHCCEE--EEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 72001--01013105513899999829969--998604466677666778899999850254034215666432334437 Q T0591 122 VARGD--KVAIVQPDYFANRKLVEFFEGEM--VPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 122 ~~pGd--~Vl~~~P~y~~~~~~~~~~g~~~--v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) ++||. .-+.--|+|.+...+....+.++ +.||-+ .-++.++++...++|.+++.+=+ +++ T Consensus 38 VnP~kgG~~v~G~pvy~sV~d~p~~~d~d~avI~VP~~----------~v~~a~~e~~~~Gik~~viis~G------f~e 101 (288) T 2nu8_A 38 VTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAP----------FCKDSILEAIDAGIKLIITITEG------IPT 101 (288) T ss_dssp ECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGG----------GHHHHHHHHHHTTCSEEEECCCC------CCH T ss_pred ECCCCCCCEEECCCCCCCHHHHHHCCCCCEEEEECCCH----------HHHHHHHHHHHCCCCEEEEECCC------CCH T ss_conf 67996763553874657599986334876699705837----------88999999997799689997089------871 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 899999999863787578417502355 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) .+-+++.++|+++|+.||==++++.+. T Consensus 102 ~~~~~l~~~a~~~g~riiGPNc~Gii~ 128 (288) T 2nu8_A 102 LDMLTVKVKLDEAGVRMIGPNTPGVIT 128 (288) T ss_dssp HHHHHHHHHHHHHTCEEECSSCCEEEE T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCC T ss_conf 127999987520497897799876517 No 189 >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Probab=83.30 E-value=2 Score=20.72 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=55.7 Q ss_pred HHCCH--HHHHHHCCCHHHHHHHHH--HCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 72001--010131055138999998--29969998604466677666778899999850254034215666432334437 Q T0591 122 VARGD--KVAIVQPDYFANRKLVEF--FEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 122 ~~pGd--~Vl~~~P~y~~~~~~~~~--~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) ++|+. .-+.--|+|++...+-.- ...-++.||-+ .-++.++++...++|.+++.+- =+++ T Consensus 38 VnP~~~G~ev~G~p~y~sv~dlp~~~~vDlavi~vPa~----------~v~~~~~e~~~~Gvk~~viis~------Gf~E 101 (288) T 1oi7_A 38 VTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAP----------AAADAALEAAHAGIPLIVLITE------GIPT 101 (288) T ss_dssp ECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHH----------HHHHHHHHHHHTTCSEEEECCS------CCCH T ss_pred ECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEECCHH----------HHHHHHHHHHHCCCCEEEEECC------CCCC T ss_conf 64898863787920347467743467876799962789----------9999999998679988999679------9873 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 89999999986378757841750235 Q T0591 198 EEIGQIAALAARYGATVIADQLYSRL 223 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~~l 223 (406) ..-+++.++|+++++.|+==++++.+ T Consensus 102 ~~~~~l~~~a~~~giriiGPNc~Gi~ 127 (288) T 1oi7_A 102 LDMVRAVEEIKALGSRLIGGNCPGII 127 (288) T ss_dssp HHHHHHHHHHHHHTCEEEESSSCEEE T ss_pred CCHHHHHHHHHCCCCEEECCCCCCEE T ss_conf 35678998651569578768865146 No 190 >3l6e_A Oxidoreductase, short-chain dehydrogenase/reductase family; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Probab=82.34 E-value=2.1 Score=20.48 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=56.0 Q ss_pred CEEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC--- Q ss_conf 7078824872789-999999972001010131055138999998299699986044666776667788999998502--- Q T0591 102 DGLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--- 177 (406) Q Consensus 102 ~~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~--- 177 (406) ..|+|| |++.|| ..+.+.|...|..|++..-.-..........+.+...+++|.. |.+.+++.++. T Consensus 4 ~~VlIT-GassGIG~a~A~~la~~G~~V~l~~R~~~~l~~~~~~~~~~~~~~~~Dv~---------~~~~~~~~~~~~~~ 73 (235) T 3l6e_A 4 GHIIVT-GAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLA---------HHEDVDVAFAAAVE 73 (235) T ss_dssp CEEEEE-STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTT---------SHHHHHHHHHHHHH T ss_pred CEEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCC---------CHHHHHHHHHHHHH T ss_conf 989998-88549999999999987998999989899999999973996699985689---------99999999999999 Q ss_pred ---CCEEEECCCC-CCCCCCC--CCHHHHHHHHHHH Q ss_conf ---5403421566-6432334--4378999999998 Q T0591 178 ---GARVFLFSNP-NNPAGVV--YSAEEIGQIAALA 207 (406) Q Consensus 178 ---~~k~i~l~~P-~NPTG~~--~s~~~l~~i~~~a 207 (406) ... ++++|- -++.+.. .+.++++++.++- T Consensus 74 ~~g~~d-ilin~ag~~~~~~~~~~~~e~~~~~~~~N 108 (235) T 3l6e_A 74 WGGLPE-LVLHCAGTGEFGPVGVYTAEQIRRVMESN 108 (235) T ss_dssp HHCSCS-EEEEECCCC------CCCHHHHHHHHHHH T ss_pred HCCCCE-EEEECCCCCCCCCHHHCCHHHHHHHHHHH T ss_conf 769967-99979977789882769999999999998 No 191 >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Probab=81.94 E-value=2.2 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHHCCCCCC Q ss_conf 88999999999986488678 Q T0591 80 LGIRDLLAPRLAAFTGAPVD 99 (406) Q Consensus 80 ~~Lr~aia~~~~~~~g~~~~ 99 (406) .+|++.|. -.+++ |+.+- T Consensus 65 ~df~~lV~-~aH~~-GI~Vi 82 (448) T 1g94_A 65 AQFIDMVN-RCSAA-GVDIY 82 (448) T ss_dssp HHHHHHHH-HHHHT-TCEEE T ss_pred HHHHHHHH-HHHHC-CCEEE T ss_conf 99999999-99988-99999 No 192 >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Probab=81.80 E-value=2.2 Score=20.35 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=30.1 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC Q ss_conf 323344378999999998637875784175023556 Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406) Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406) |+...-+.++++++++-|+++|+-||.|-+|.++.. T Consensus 305 ~d~~yGt~edfk~LV~~aH~~GI~VIlDvV~NHt~~ 340 (722) T 3k1d_A 305 PTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPK 340 (722) T ss_dssp ECGGGCCHHHHHHHHHHHHHTTCEEEEEECTTCCCC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 687889999999999999765968999874567788 No 193 >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, hydrolase; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Probab=81.02 E-value=1 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 7899999999863787578417502355 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) .++++++++-|+++|+-||.|-+|.+.. T Consensus 315 ~~dfk~LV~~aH~~GI~VIlDvV~NH~~ 342 (718) T 2e8y_A 315 KTELKQMINTLHQHGLRVILDVVFNHVY 342 (718) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC T ss_conf 9999999999987799899857423676 No 194 >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Probab=80.67 E-value=2.4 Score=20.09 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=28.6 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 66432334437899999999863787578417502355 Q T0591 187 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 187 P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) |+.+-| +.++++++++-|+++|+-||.|-+|.+.. T Consensus 185 ~~~~~G---~~~dfk~lV~~~H~~GI~VilDvV~NH~~ 219 (602) T 2bhu_A 185 PYAPYG---RPEDLMALVDAAHRLGLGVFLDVVYNHFG 219 (602) T ss_dssp ECGGGC---CHHHHHHHHHHHHHTTCEEEEEECCSCCC T ss_pred CCCCCC---CHHHHHHHHHHHHHCCCEEECCCCCCCCC T ss_conf 347788---89999999999976396896245655556 No 195 >3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} Probab=80.23 E-value=2.5 Score=20.00 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=9.3 Q ss_pred HHHHHHHCCEEEEEEECCC Q ss_conf 9999982996999860446 Q T0591 139 RKLVEFFEGEMVPVQLDYV 157 (406) Q Consensus 139 ~~~~~~~g~~~v~v~~~~~ 157 (406) ...++..|+..|.+|+... T Consensus 58 i~~ik~~Gfn~VRiPv~w~ 76 (353) T 3l55_A 58 MTFLMQNGFNAVRIPVTWY 76 (353) T ss_dssp HHHHHHTTEEEEEECCCCG T ss_pred HHHHHHCCCCEEEECCCHH T ss_conf 9999986998699677788 No 196 >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} Probab=79.35 E-value=2.7 Score=19.81 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=50.5 Q ss_pred HHHHCCCHHHHHHHHHH-CC--EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 01310551389999982-99--6999860446667766677889999985025403421566643233443789999999 Q T0591 129 AIVQPDYFANRKLVEFF-EG--EMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAA 205 (406) Q Consensus 129 l~~~P~y~~~~~~~~~~-g~--~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~ 205 (406) +.--|+|++...+.... .. -++.||-+ .-++.++++...++|.+++.+-. ++++.-+++.+ T Consensus 53 V~G~p~y~sv~di~~~~~~vDlavi~vPa~----------~v~~~v~e~~~~Gvk~~vIis~G------f~E~~e~~l~~ 116 (297) T 2yv2_A 53 VHGVPVYDSVKEALAEHPEINTSIVFVPAP----------FAPDAVYEAVDAGIRLVVVITEG------IPVHDTMRFVN 116 (297) T ss_dssp ETTEEEESSHHHHHHHCTTCCEEEECCCGG----------GHHHHHHHHHHTTCSEEEECCCC------CCHHHHHHHHH T ss_pred EECEECCCCHHHHHCCCCCCCEEEEECCHH----------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHH T ss_conf 849663583888730789977899924889----------99999999997599689997899------99789999999 Q ss_pred HHHHCCCEEEECCCCCC Q ss_conf 98637875784175023 Q T0591 206 LAARYGATVIADQLYSR 222 (406) Q Consensus 206 ~a~~~~~~ii~De~Y~~ 222 (406) +|+++++-|+==++.+. T Consensus 117 ~A~~~giri~GPNclGi 133 (297) T 2yv2_A 117 YARQKGATIIGPNCPGA 133 (297) T ss_dssp HHHHHTCEEECSSSCEE T ss_pred HHHHCCCEEECCCCCCC T ss_conf 98745987865898862 No 197 >1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6 Probab=79.31 E-value=2.1 Score=20.46 Aligned_cols=22 Identities=5% Similarity=0.040 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHCCCE-EEECCC Q ss_conf 8999999998637875-784175 Q T0591 198 EEIGQIAALAARYGAT-VIADQL 219 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~-ii~De~ 219 (406) ..+.++.++++++|.. ++.+|+ T Consensus 197 ~~~~~l~~~~~~~Gk~~~~W~D~ 219 (367) T 1yht_A 197 TYANKLSYFLEKKGLKTRMWNDG 219 (367) T ss_dssp HHHHHHHHHHHHTTCEEEEESTT T ss_pred HHHHHHHHHHHHCCCEEEEEEHH T ss_conf 99999999999779989997134 No 198 >1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, hydrolase; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 1o7a_A* 2gk1_B* Probab=78.90 E-value=2.7 Score=19.72 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=58.6 Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHH---C-CHH------H-HHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCC Q ss_conf 488678867078824872789999999972---0-010------1-0131055138999998299699986044666776 Q T0591 94 TGAPVDARDGLIITPGTQGALFLAVAATVA---R-GDK------V-AIVQPDYFANRKLVEFFEGEMVPVQLDYVSADET 162 (406) Q Consensus 94 ~g~~~~~~~~I~it~G~~~~l~~~~~~l~~---p-Gd~------V-l~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~ 162 (406) |-+.+++ +.|.|+..+..|++-.+++|.. . ++. + +...|-| ...++.+|.. T Consensus 100 Y~L~i~~-~~i~I~a~~~~G~~yg~~TL~QL~~~~~~~~~~~p~~~I~D~P~~------------~~RG~mlD~a----- 161 (507) T 1now_A 100 YTLLVKE-PVAVLKANRVWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRF------------SHRGILIDTS----- 161 (507) T ss_dssp EEEEECS-SEEEEEESSHHHHHHHHHHHHHHCEECTTSCEEEEEEEEEECCSC------------SEEEEEEESS----- T ss_pred EEEEECC-CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCCC------------CCCCEEEECC----- T ss_conf 3999748-848999789999999999999984216788555344468754787------------7346689837----- Q ss_pred CCCCCHHHHHHHHCC------CCEEEECC-----------CCC--C----CCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 667788999998502------54034215-----------666--4----323344378999999998637875784 Q T0591 163 RAGLDLTGLEEAFKA------GARVFLFS-----------NPN--N----PAGVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 163 ~~~~d~~~l~~~~~~------~~k~i~l~-----------~P~--N----PTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) +..+.++.+++.++. +.--+-++ .|. + ..+..||.+++++|++.|+++++-||- T Consensus 162 R~f~~~~~lk~~id~ma~~KlN~lhlHltDd~~fr~e~~~~p~l~~~~~~~~~~~YT~~ei~eiv~yA~~rgI~vIP 238 (507) T 1now_A 162 RHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLP 238 (507) T ss_dssp SSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 88607999999999998707577999962042102204456421335776778876999999999999974988986 No 199 >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Probab=78.56 E-value=2.8 Score=19.66 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=28.7 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC Q ss_conf 23344378999999998637875784175023556 Q T0591 191 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406) ....-+.++++++++-|+++|+-||.|-+|.+... T Consensus 198 d~~yGt~edfk~LV~~aH~~GI~VilDvV~NHt~~ 232 (617) T 1m7x_A 198 TRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPT 232 (617) T ss_dssp CGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCC T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 86668889999999998654877998576566778 No 200 >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Probab=78.54 E-value=2.5 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=24.0 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 378999999998637875784175023 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) +.++++++++-|+++|+-||.|-++.+ T Consensus 154 T~ed~k~Lv~~~H~~GI~VilD~V~NH 180 (644) T 3czg_A 154 SNDDLVALTSRLREAGISLCADFVLNH 180 (644) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSE T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999999999987998999978786 No 201 >1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3ij8_A* 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* ... Probab=77.96 E-value=2.9 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHHHCCCCCC Q ss_conf 88999999999986488678 Q T0591 80 LGIRDLLAPRLAAFTGAPVD 99 (406) Q Consensus 80 ~~Lr~aia~~~~~~~g~~~~ 99 (406) .+|++.|. -.+++ |+.+- T Consensus 77 ~dfk~Lv~-~aH~~-GI~Vi 94 (496) T 1hx0_A 77 NEFRDMVT-RCNNV-GVRIY 94 (496) T ss_dssp HHHHHHHH-HHHHT-TCEEE T ss_pred HHHHHHHH-HHHHC-CCEEE T ss_conf 99999999-99988-99899 No 202 >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Probab=77.06 E-value=3.1 Score=19.37 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=15.3 Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECC Q ss_conf 873078776688788989999999986891896161 Q T0591 334 QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGT 369 (406) Q Consensus 334 ~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~ 369 (406) .+|+|+|--=.+. ...+++- .++ ++|++=-|-+ T Consensus 363 ~~GW~FWtwKte~-~~~Wd~~-~~~-~~g~~P~~~~ 395 (408) T 1h4p_A 363 RGGWIIWCYKTES-SLEWDAQ-RLM-FNGLFPQPLT 395 (408) T ss_dssp TTEEEESCSCCSS-CSTTCHH-HHH-HTTSSCSSTT T ss_pred CCCEEEEEEECCC-CCCCCHH-HHH-HCCCCCCCCC T ss_conf 9948997055699-9877889-999-7898789974 No 203 >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} Probab=76.49 E-value=3.2 Score=19.27 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=64.0 Q ss_pred CCCCCCCEEEEECCC--CHHHHHHHHHH---------HHCCH--HHHHHHCCCHHHHHHHHHHCCE--EEEEEECCCCCC Q ss_conf 867886707882487--27899999999---------72001--0101310551389999982996--999860446667 Q T0591 96 APVDARDGLIITPGT--QGALFLAVAAT---------VARGD--KVAIVQPDYFANRKLVEFFEGE--MVPVQLDYVSAD 160 (406) Q Consensus 96 ~~~~~~~~I~it~G~--~~~l~~~~~~l---------~~pGd--~Vl~~~P~y~~~~~~~~~~g~~--~v~v~~~~~~~~ 160 (406) +-++..+.|++ -|. .++.+..-..+ ++|+. +-+.--|+|++...+.+..+.+ ++.+|-+ T Consensus 8 ~~~~~~t~v~v-~G~tg~~g~~~~~~~~~~gt~~v~gVnP~~~G~ev~Gvp~y~sv~e~~~~~~vDlavI~vPa~----- 81 (294) T 2yv1_A 8 ILLDENTKAIV-QGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAP----- 81 (294) T ss_dssp CSSCTTCCEEE-ETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH----- T ss_pred EEECCCCEEEE-ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECEECCCHHHHHHCCCCCCEEEEECCHH----- T ss_conf 99869987999-899972767999999974998888878998842884951407099974187998899947889----- Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 7666778899999850254034215666432334437899999999863787578417502 Q T0591 161 ETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 161 ~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) .-++.++++...+.|.+++.+= =+++.+.++|.++|+++++.||==++.+ T Consensus 82 -----~v~~~v~ea~~~Gvk~~viis~------Gf~e~~~~~l~~~A~~~g~riiGPNc~G 131 (294) T 2yv1_A 82 -----FAKDAVFEAIDAGIELIVVITE------HIPVHDTMEFVNYAEDVGVKIIGPNTPG 131 (294) T ss_dssp -----HHHHHHHHHHHTTCSEEEECCS------CCCHHHHHHHHHHHHHHTCEEECSSCCE T ss_pred -----HHHHHHHHHHHCCCCEEEEECC------CCCCCCHHHHHHHHHHCCCEEECCCCCC T ss_conf -----9999999999769987999889------9681419999999997298887799874 No 204 >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* Probab=73.63 E-value=2.9 Score=19.56 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 78999999998637875784175023 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) .++++++++-|+++|+-||.|-+|.+ T Consensus 74 ~~dfk~LV~~aH~~GI~VilD~V~NH 99 (471) T 1jae_A 74 ESAFTDMTRRCNDAGVRIYVDAVINH 99 (471) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSB T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999999999987998999963454 No 205 >1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A* Probab=71.34 E-value=4.2 Score=18.44 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=63.5 Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHH--C--CHH----H-HHHHCCCH-------------------HHHHHHHHH Q ss_conf 488678867078824872789999999972--0--010----1-01310551-------------------389999982 Q T0591 94 TGAPVDARDGLIITPGTQGALFLAVAATVA--R--GDK----V-AIVQPDYF-------------------ANRKLVEFF 145 (406) Q Consensus 94 ~g~~~~~~~~I~it~G~~~~l~~~~~~l~~--p--Gd~----V-l~~~P~y~-------------------~~~~~~~~~ 145 (406) |-+.+++ +.|.|+..+..|++-.+++|.. + ++. + +-..|-|. .+......+ T Consensus 262 Y~L~I~~-~~I~I~a~~~~G~fyGlqTL~QLl~~~~~~~lp~~~I~D~Prf~~RGlmLDvaR~F~s~~~Ik~~ID~MA~y 340 (858) T 1c7s_A 262 YELKIGK-KEAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAY 340 (858) T ss_dssp EEEEECS-SCEEEEESSHHHHHHHHHHHHHHSCTTSCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHHT T ss_pred EEEEEEC-CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 4999807-948999665789989999999974642687421068866788870354797277666899999999999970 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCC-EEE-----ECCCC---C--CCCCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 9969998604466677666778899999850254-034-----21566---6--43233443789999999986378757 Q T0591 146 EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGA-RVF-----LFSNP---N--NPAGVVYSAEEIGQIAALAARYGATV 214 (406) Q Consensus 146 g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~-k~i-----~l~~P---~--NPTG~~~s~~~l~~i~~~a~~~~~~i 214 (406) .....+.++. |+.+|++....+.++..-.. +.- ....| + ++.|..||.+++++|++.|+++++-| T Consensus 341 KlN~lHlHLt----DDqgWRlEi~~~PeLt~~Ga~r~~~~~e~~~~~p~~~~~~~~~~GyYT~eDi~eIv~YA~~RgI~V 416 (858) T 1c7s_A 341 KLNKFHFHLS----DDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEV 416 (858) T ss_dssp TCCEEEEECE----ETTEECBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTCCSSCEECCBCHHHHHHHHHHHHTTTCEE T ss_pred CCCEEEEEEE----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 9927999986----577652214667541010212234434544446655788877787116999999999999849988 Q ss_pred EE Q ss_conf 84 Q T0591 215 IA 216 (406) Q Consensus 215 i~ 216 (406) |= T Consensus 417 IP 418 (858) T 1c7s_A 417 IP 418 (858) T ss_dssp EE T ss_pred EE T ss_conf 44 No 206 >1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1eha_A Probab=71.05 E-value=4.3 Score=18.40 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 34437899999999863787578417502355 Q T0591 193 VVYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 193 ~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) ..-+.++++++++-|+++|+-||.|-++.+.. T Consensus 163 ~~Gt~~dfk~LV~~aH~~GI~VilDvV~NHts 194 (558) T 1eh9_A 163 SYGGPEGFRKLVDEAHKKGLGVILDVVYNHVG 194 (558) T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEECCSCCC T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC T ss_conf 89999999999999987699899985025667 No 207 >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Probab=70.41 E-value=4.4 Score=18.31 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCC Q ss_conf 378999999998637875784175023556 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406) +.++++++++-|+++|+-||.|-+|.+... T Consensus 271 t~~dfk~LV~~aH~~GI~VIlDvV~NHt~~ 300 (750) T 1bf2_A 271 PTAEFQAMVQAFHNAGIKVYMDVVYNHTAE 300 (750) T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCSSCTT T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEECCCCC T ss_conf 999999999999978998999887545667 No 208 >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Probab=70.17 E-value=4.5 Score=18.28 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.0 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 37899999999863787578417502355 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) +.++++++++-|+++|+-||.|-+|.+.. T Consensus 265 t~~dfk~lV~~aH~~GI~VIlDvV~NH~~ 293 (718) T 2vr5_A 265 QVLSFKKMVNELHNAGIEVIIDVVYNHTA 293 (718) T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECCSCCS T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 99999999999986799899513223465 No 209 >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Probab=69.25 E-value=4.3 Score=18.40 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=5.6 Q ss_pred HHHHHHHHHHCCCEEEEC Q ss_conf 999999986378757841 Q T0591 200 IGQIAALAARYGATVIAD 217 (406) Q Consensus 200 l~~i~~~a~~~~~~ii~D 217 (406) ++++++-|+++|+-||.| T Consensus 77 fk~Lv~~aH~~Gi~VilD 94 (422) T 1ua7_A 77 FKEMCAAAEEYGIKVIVD 94 (422) T ss_dssp HHHHHHHHHTTTCEEEEE T ss_pred HHHHHHHHHHCCCEEEEE T ss_conf 999999986568879998 No 210 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=67.21 E-value=4.4 Score=18.35 Aligned_cols=136 Identities=10% Similarity=-0.046 Sum_probs=55.9 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 34156786788788899999999998087888878888988999999999986488678867078824872789999999 Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAA 120 (406) Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~ 120 (406) +||++- ..|.+.+.+++.+++..+-. ----+.|.++..|.-...+.+.+|+.+-.++..=+.+...... +.. T Consensus 37 ~dlavi----~vp~~~v~~~~~e~~~~Gv~-~~v~s~g~~~~de~~l~~~a~~~g~rviGPNc~G~i~~~~~l~---~~~ 108 (480) T 3dmy_A 37 ANLALI----SVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLA---FAN 108 (480) T ss_dssp CCEEEE----CSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHHTTCCEECSSCCEEEETTEEEE---SCC T ss_pred CCEEEE----EECHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC---CCC T ss_conf 998999----71788899999999977996-9998098998899999999998799999999855606898855---166 Q ss_pred HHHCCHHHHHHHCCCHH--HHHHHHHHCCEEE-EEEECCCCCCCCCCCCCHHHHHHHH--CCCCEEEEC Q ss_conf 97200101013105513--8999998299699-9860446667766677889999985--025403421 Q T0591 121 TVARGDKVAIVQPDYFA--NRKLVEFFEGEMV-PVQLDYVSADETRAGLDLTGLEEAF--KAGARVFLF 184 (406) Q Consensus 121 l~~pGd~Vl~~~P~y~~--~~~~~~~~g~~~v-~v~~~~~~~~~~~~~~d~~~l~~~~--~~~~k~i~l 184 (406) ...||..-++..-+=.. ....+...|.-.- .|-+.-....++-..+++.++-..+ ++.|++|++ T Consensus 109 ~~~~G~i~ivsqSG~~~~~~~~~~~~~g~G~s~~vs~Gn~~~~~~~~~~~~~d~l~~l~~Dp~T~vI~~ 177 (480) T 3dmy_A 109 VMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAF 177 (480) T ss_dssp CCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEE T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE T ss_conf 689984689965716999999999974898128998288666664357309999999723988608999 No 211 >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrolase, cellulose degradation; 1.60A {Clostridium cellulolyticum H10} SCOP: c.1.8.3 Probab=64.53 E-value=5.8 Score=17.54 Aligned_cols=18 Identities=6% Similarity=-0.088 Sum_probs=9.6 Q ss_pred HHHHHHHHCCEEEEEEEC Q ss_conf 899999829969998604 Q T0591 138 NRKLVEFFEGEMVPVQLD 155 (406) Q Consensus 138 ~~~~~~~~g~~~v~v~~~ 155 (406) ....++..|++.|.+|+. T Consensus 66 ~i~~ik~~Gfn~VRiPv~ 83 (380) T 1edg_A 66 MIDAIKQKGFNTVRIPVS 83 (380) T ss_dssp HHHHHHHHTCCEEEECCC T ss_pred HHHHHHHCCCCEEEEECC T ss_conf 999999869986998141 No 212 >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* Probab=62.29 E-value=4.6 Score=18.18 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=10.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHH Q ss_conf 7078824872789999999972 Q T0591 102 DGLIITPGTQGALFLAVAATVA 123 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~ 123 (406) ++|+++..|+.+...+..++.. T Consensus 116 ~rv~~~G~S~Gg~~a~~~a~~~ 137 (226) T 3cn9_A 116 ERIILAGFSQGGAVVLHTAFRR 137 (226) T ss_dssp GGEEEEEETHHHHHHHHHHHHT T ss_pred HHEEEEEECCHHHHHHHHHHHC T ss_conf 0478987782489999999848 No 213 >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Probab=61.16 E-value=5.4 Score=17.71 Aligned_cols=10 Identities=10% Similarity=-0.104 Sum_probs=4.8 Q ss_pred CCCEEEEEEC Q ss_conf 8730787766 Q T0591 334 QAGSYLFPRL 343 (406) Q Consensus 334 ~gg~~~w~~~ 343 (406) +...++|.+. T Consensus 402 ~~~v~~f~R~ 411 (480) T 1ud2_A 402 HWDVVGWTRE 411 (480) T ss_dssp SSSEEEEEEC T ss_pred CCCEEEEEEE T ss_conf 8988999994 No 214 >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Probab=60.97 E-value=5.7 Score=17.56 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 7899999999863787578417502 Q T0591 197 AEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) .++++++++-|+++|+-||.|-++. T Consensus 78 ~~dfk~LV~~~H~~GI~VilDvV~N 102 (483) T 3bh4_A 78 KSELQDAIGSLHSRNVQVYGDVVLN 102 (483) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCS T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999999999998899999997867 No 215 >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrolase, (beta/alpha)8-barrel; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* Probab=59.83 E-value=6.8 Score=17.04 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHHCCCEEEECCCC Q ss_conf 89999999986378757841750 Q T0591 198 EEIGQIAALAARYGATVIADQLY 220 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y 220 (406) ++++++++-|+++|+-||.|-++ T Consensus 87 ~df~~LV~~aH~~GIkVilD~V~ 109 (435) T 1mxg_A 87 EELVRLIQTAHAYGIKVIADVVI 109 (435) T ss_dssp HHHHHHHHHHHHTTCEEEEEECC T ss_pred HHHHHHHHHHHHCCCEEEEEECC T ss_conf 99999999999879999998334 No 216 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Probab=59.64 E-value=7 Score=16.96 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=53.7 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) .++|| |++.+| ..+...|...|-.|++.+-.-..........|.+...+.+|.. |.+++++.++. T Consensus 7 ~alIT-Gas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~Dv~---------~~~~v~~~~~~~~~~ 76 (256) T 1k2w_A 7 TALIT-GSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVT---------DQASIDRCVAELLDR 76 (256) T ss_dssp EEEEE-TCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTT---------CHHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 99994-88758999999999987998999979999999999995895599996389---------999999999999998 Q ss_pred --CCEEEECCCC-CCCCCC--CCCHHHHHHHHHH Q ss_conf --5403421566-643233--4437899999999 Q T0591 178 --GARVFLFSNP-NNPAGV--VYSAEEIGQIAAL 206 (406) Q Consensus 178 --~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~ 206 (406) +.. ++++|- -++.+. -++.++++++.++ T Consensus 77 ~g~iD-ilVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (256) T 1k2w_A 77 WGSID-ILVNNAALFDLAPIVEITRESYDRLFAI 109 (256) T ss_dssp HSCCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH T ss_pred CCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHH T ss_conf 29982-9998997889999165999999999998 No 217 >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Probab=58.48 E-value=7 Score=16.96 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=16.1 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 378999999998637875784175023 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) +.++++++++-|+++|+-||.|-++.+ T Consensus 96 t~~df~~lv~~aH~~Gi~VilD~V~NH 122 (478) T 2guy_A 96 TADDLKALSSALHERGMYLMVDVVANH 122 (478) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 999999999999767888998435677 No 218 >2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: DNA; 2.30A {Chlorobium tepidum tls} Probab=57.83 E-value=7.5 Score=16.76 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=29.1 Q ss_pred CCCHHH-HHHHHCCCCEEEECCCCCC-CCCCCCC-HHH---HHHHHHHHHHCCCEEE Q ss_conf 778899-9998502540342156664-3233443-789---9999999863787578 Q T0591 165 GLDLTG-LEEAFKAGARVFLFSNPNN-PAGVVYS-AEE---IGQIAALAARYGATVI 215 (406) Q Consensus 165 ~~d~~~-l~~~~~~~~k~i~l~~P~N-PTG~~~s-~~~---l~~i~~~a~~~~~~ii 215 (406) ..++-+ ++.++..+...++++ || |+|...+ .++ -+++.+.|+.-|+.++ T Consensus 53 ~v~pR~i~~~al~~~A~~vIla--HNHPSG~~~PS~~D~~~T~~l~~a~~~l~i~ll 107 (126) T 2qlc_A 53 LIHPREIFKAAIRESAHSIILV--HNHPSGDVQPSNADKQVTSILKKAGDLLQIELL 107 (126) T ss_dssp GCCHHHHHHHHHHTTCSEEEEE--EECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEE T ss_pred EEEHHHHHHHHHHHCCCEEEEE--EECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE T ss_conf 8719999999998179749999--757889899898999999999999976897897 No 219 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=57.72 E-value=7.5 Score=16.75 Aligned_cols=141 Identities=9% Similarity=0.016 Sum_probs=68.0 Q ss_pred CCEEEEECCCCHHHH-HHHHHHHHCCHHHHHHHCCCHHHH---HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC Q ss_conf 670788248727899-999999720010101310551389---9999829969998604466677666778899999850 Q T0591 101 RDGLIITPGTQGALF-LAVAATVARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 176 (406) Q Consensus 101 ~~~I~it~G~~~~l~-~~~~~l~~pGd~Vl~~~P~y~~~~---~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~ 176 (406) ++.|++-+|++.+|= .+...|...|-.|++.+-.-.... ..+...|.+...+.+|.. |.+++++.++ T Consensus 43 enKvalITGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs---------d~~~v~~~v~ 113 (285) T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVS---------KKEEISEVIN 113 (285) T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTT---------CHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC---------CHHHHHHHHH T ss_conf 9988999088858999999999986999999979999999999999962994899984389---------9999999999 Q ss_pred C------CCEEEECCCCC-CCCC--CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 2------54034215666-4323--3443789999999986378757841750235568887652233210267868998 Q T0591 177 A------GARVFLFSNPN-NPAG--VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTI 247 (406) Q Consensus 177 ~------~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~ 247 (406) . +.. ++++|.. ++.+ .-++.++++++.++-- .+.+.+.- ..++.+......++|.+ T Consensus 114 ~~~~~~G~iD-iLVnnAg~~~~~~~~~~~~e~~~~~~~vNl-~~~~~~~k-------------~~~p~m~~~~~G~IVni 178 (285) T 2c07_A 114 KILTEHKNVD-ILVNNAGITRDNLFLRMKNDEWEDVLRTNL-NSLFYITQ-------------PISKRMINNRYGRIINI 178 (285) T ss_dssp HHHHHCSCCC-EEEECCCCCCCCCTTTCCHHHHHHHHHHHT-THHHHHHH-------------HHHHHHHHHTCEEEEEE T ss_pred HHHHHCCCCC-EEECCCCCCCCCCCCCCCHHHHHHHHEEEE-EECCCCCC-------------CCCCCCCCCCCEEEEEE T ss_conf 9998649975-420122333332223453888653305776-41011111-------------25733125898299998 Q ss_pred EECCHHCCCCCCCCHHHHH Q ss_conf 5040010463112114332 Q T0591 248 MGPSKTESLSGYRLGVAFG 266 (406) Q Consensus 248 ~S~SK~~~~~GlRiG~~~~ 266 (406) .|.+-..+.+|. ..|.++ T Consensus 179 sS~~~~~~~~~~-~~Y~as 196 (285) T 2c07_A 179 SSIVGLTGNVGQ-ANYSSS 196 (285) T ss_dssp CCTHHHHCCTTC-HHHHHH T ss_pred CCHHHCCCCCCC-HHHHHH T ss_conf 776656789997-799999 No 220 >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, alpha-1,4-glucan-4-glucanohydrolase, thermostability, calcium, sodium; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Probab=56.74 E-value=7.5 Score=16.77 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=6.2 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 899999999998648867 Q T0591 81 GIRDLLAPRLAAFTGAPV 98 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~~ 98 (406) +|++.|.+ .+++ |+.+ T Consensus 83 df~~LV~~-aH~~-GIkV 98 (515) T 1hvx_A 83 QYLQAIQA-AHAA-GMQV 98 (515) T ss_dssp HHHHHHHH-HHHT-TCEE T ss_pred HHHHHHHH-HHHC-CCEE T ss_conf 99999999-9988-9999 No 221 >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Probab=56.65 E-value=7.8 Score=16.63 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=68.8 Q ss_pred EEEEECCCCHHHH-HHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 0788248727899-99999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGALF-LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l~-~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) -|.+-+|++.||= .+...|...|..|++.+=.=.........++.+...+.+|.. |.+++++.++. T Consensus 6 KV~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dv~---------~~~~v~~~~~~~~~~ 76 (281) T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVT---------DGERIDVVAADVLAR 76 (281) T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTT---------CHHHHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 99999088869999999999987999999989999999999976895799997379---------999999999999997 Q ss_pred --CCEEEECCCC-CCCCCC--CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCH Q ss_conf --5403421566-643233--44378999999998637875784175023556888765223321026786899850400 Q T0591 178 --GARVFLFSNP-NNPAGV--VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 252 (406) Q Consensus 178 --~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 252 (406) +... +++|- .++.+. -++.++++++.++--. +.+.+.-. .++.+......++|.+.|.+- T Consensus 77 ~g~iDi-LVnnAG~~~~~~~~~~~~~~~~~~~~vNl~-~~~~~~~~-------------~lp~m~~~~~G~IV~isS~~~ 141 (281) T 3m1a_A 77 YGRVDV-LVNNAGRTQVGAFEETTERELRDLFELHVF-GPARLTRA-------------LLPQMRERGSGSVVNISSFGG 141 (281) T ss_dssp HSCCSE-EEECCCCEEECCTTTCCHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHHTCEEEEEECCGGG T ss_pred CCCCEE-EEECCCCCCCCCHHHCCHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHHHCCCCEEEEECCHHH T ss_conf 399729-998997778888255999999999999989-99999999-------------999777649917999687553 Q ss_pred HCCCCCCCCHHHHH Q ss_conf 10463112114332 Q T0591 253 TESLSGYRLGVAFG 266 (406) Q Consensus 253 ~~~~~GlRiG~~~~ 266 (406) ..+.||. ..|..+ T Consensus 142 ~~~~~~~-~~Y~as 154 (281) T 3m1a_A 142 QLSFAGF-SAYSAT 154 (281) T ss_dssp TCCCTTC-HHHHHH T ss_pred CCCCCCC-HHHHHH T ss_conf 5789997-789999 No 222 >2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Probab=56.46 E-value=7.9 Score=16.61 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=7.2 Q ss_pred HHHHHHHHHC--CCEEEE Q ss_conf 9999998637--875784 Q T0591 201 GQIAALAARY--GATVIA 216 (406) Q Consensus 201 ~~i~~~a~~~--~~~ii~ 216 (406) +++.+..++. +.+|++ T Consensus 245 ~~~~~aIR~~d~~~~i~~ 262 (481) T 2osx_A 245 QRTTDAIRQVDQDTWVCV 262 (481) T ss_dssp HHHHHHHTTTCSSSEEEE T ss_pred HHHHHHHHHCCCCCEEEE T ss_conf 999899986089868998 No 223 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Probab=55.79 E-value=8.1 Score=16.54 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=53.0 Q ss_pred CHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHH Q ss_conf 88999999999980878---888788889889999999999864886788670788248727899999999720010101 Q T0591 54 TPGAFDLFSAGVQSGGV---QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAI 130 (406) Q Consensus 54 ~~~~~~~~~~~~~~~~~---~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~ 130 (406) .|...+...+.+...+. ..|. ..+..+++.+.+ .+. |-|+|++-...=...+. ..++.|-+|+| T Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~d~~~~l~~---------~~i-DaV~IaTP~~~H~~~~~-~al~aGkhVl~ 120 (444) T 2ixa_A 54 DPYMVGRAQEILKKNGKKPAKVFG--NGNDDYKNMLKD---------KNI-DAVFVSSPWEWHHEHGV-AAMKAGKIVGM 120 (444) T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEC--SSTTTHHHHTTC---------TTC-CEEEECCCGGGHHHHHH-HHHHTTCEEEE T ss_pred CHHHHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHCC---------CCC-CEEEECCCHHHHHHHHH-HHHHCCCEEEE T ss_conf 888999999999983886320026--545769999548---------999-88998488075899999-99862966774 Q ss_pred HHCCCHHHHHHHHH------HCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 31055138999998------2996999860446667766677889999985025 Q T0591 131 VQPDYFANRKLVEF------FEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG 178 (406) Q Consensus 131 ~~P~y~~~~~~~~~------~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~ 178 (406) +.|--.....+.++ .|.. +.|. ...+|.+....+++++..+ T Consensus 121 EKPl~~t~~e~~~l~~~a~~~g~~-~~vg------~~~R~~p~~~~~k~li~~G 167 (444) T 2ixa_A 121 EVSGAITLEECWDYVKVSEQTGVP-LMAL------ENVCYRRDVMAILNMVRKG 167 (444) T ss_dssp CCCCCSSHHHHHHHHHHHHHHCCC-EEEC------CGGGGCHHHHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-CEEC------CCCCCCHHHHHHHHHHHCC T ss_conf 178979999999999999982998-0420------0444686899999999769 No 224 >3c7b_A Sulfite reductase, dissimilatory-type subunit alpha; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Probab=55.69 E-value=5 Score=17.96 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=10.0 Q ss_pred EEEEECCCCHHHHHHHHHHH Q ss_conf 07882487278999999997 Q T0591 103 GLIITPGTQGALFLAVAATV 122 (406) Q Consensus 103 ~I~it~G~~~~l~~~~~~l~ 122 (406) +|.+..-.++-+.-++..|. T Consensus 135 ~I~l~g~~~e~l~~i~~eL~ 154 (417) T 3c7b_A 135 DIIFLGTRSEYLQPCFEDLG 154 (417) T ss_dssp CEEEEEECGGGHHHHHHHHH T ss_pred CEEEECCCHHHHHHHHHHHH T ss_conf 77982798788899999987 No 225 >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, RAW starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii h 168} PDB: 3bcd_A* 3bcf_A Probab=55.24 E-value=8.2 Score=16.51 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=14.4 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 37899999999863787578417502 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) ++++++++++-|+++|+-||.|-++. T Consensus 207 T~edlk~LV~aaH~~GI~VIlDvV~N 232 (599) T 3bc9_A 207 TKGELENAIDALHNNDIKVYFDAVLN 232 (599) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 99999999999998899899998337 No 226 >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Probab=55.10 E-value=8.3 Score=16.47 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=23.4 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 43789999999986378757841750235 Q T0591 195 YSAEEIGQIAALAARYGATVIADQLYSRL 223 (406) Q Consensus 195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~~l 223 (406) =+.++++++++-|+++|+-||.|-++.+. T Consensus 113 Gt~edfk~LV~~aH~~GikVilD~V~NHt 141 (686) T 1d3c_A 113 GTIADFQNLIAAAHAKNIKVIIDFAPNHT 141 (686) T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECTTEE T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 99999999999999889999999825653 No 227 >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Probab=55.01 E-value=8.3 Score=16.46 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 78999999998637875784175023 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) .++++++++-|+++|+-||.|-++.+ T Consensus 68 ~~d~k~Lv~~ah~~Gi~VilD~V~NH 93 (405) T 1ht6_A 68 AAELKSLIGALHGKGVQAIADIVINH 93 (405) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSB T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 99999999999988898998640478 No 228 >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Probab=54.48 E-value=8.5 Score=16.40 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=8.8 Q ss_pred CHHHHHHHHHHHHHHCCCCCC Q ss_conf 988999999999986488678 Q T0591 79 DLGIRDLLAPRLAAFTGAPVD 99 (406) Q Consensus 79 ~~~Lr~aia~~~~~~~g~~~~ 99 (406) ..+||+.|. -+++ .|+.+- T Consensus 81 ~~dfk~lV~-~~H~-~Gi~Vi 99 (488) T 1wza_A 81 LEDFHKLVE-AAHQ-RGIKVI 99 (488) T ss_dssp HHHHHHHHH-HHHH-TTCEEE T ss_pred HHHHHHHHH-HHHH-CCCEEE T ss_conf 999999999-9998-799999 No 229 >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Probab=54.24 E-value=8.6 Score=16.38 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=51.9 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) .++|| |++.+| ..+...|...|-.|++.+-.-.......+..+.+...+.+|.. |.+++++.++. T Consensus 8 ~alIT-Gas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~---------~~~~v~~~~~~~~~~ 77 (263) T 2a4k_A 8 TILVT-GAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVS---------DPKAVEAVFAEALEE 77 (263) T ss_dssp EEEEE-STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTT---------SHHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 89995-87769999999999986999999979889999999973895699981079---------999999999999998 Q ss_pred --CCEEEECCCCC-CCCC--CCCCHHHHHHHHHH Q ss_conf --54034215666-4323--34437899999999 Q T0591 178 --GARVFLFSNPN-NPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 178 --~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~ 206 (406) +... +++|-. ++.+ .-++.++++++.++ T Consensus 78 ~G~iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~v 110 (263) T 2a4k_A 78 FGRLHG-VAHFAGVAHSALSWNLPLEAWEKVLRV 110 (263) T ss_dssp HSCCCE-EEEGGGGTTTTC----CHHHHHHHHHH T ss_pred HCCCCE-EEECCCCCCCCCHHHHHHHHHHEEEEC T ss_conf 499628-995553468862454210001113211 No 230 >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas, ligand, substrate; 1.60A {Thermoanaerobacteriumthermosulfurigenes} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Probab=54.15 E-value=8.6 Score=16.37 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=22.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 3789999999986378757841750235 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRL 223 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l 223 (406) +.++++++++-|+++|+.||.|-++.+. T Consensus 115 t~~dfk~LV~~aH~~GIkVilD~V~NHt 142 (683) T 3bmv_A 115 SFTDFQNLINTAHAHNIKVIIDFAPNHT 142 (683) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTEE T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9999999999999889989999896775 No 231 >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Probab=53.89 E-value=8.7 Score=16.34 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=39.7 Q ss_pred CCCCHHHHHHHHC---C-CCEEEECC----CCCC----------CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 6778899999850---2-54034215----6664----------3233443789999999986378757841750235 Q T0591 164 AGLDLTGLEEAFK---A-GARVFLFS----NPNN----------PAGVVYSAEEIGQIAALAARYGATVIADQLYSRL 223 (406) Q Consensus 164 ~~~d~~~l~~~~~---~-~~k~i~l~----~P~N----------PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l 223 (406) ++-|+..+.+.+. + +..+|+|+ +++| +....-+.++++++++-|+++|+-||.|-++.+. T Consensus 167 ~gGd~~Gi~~kLdyLk~LGv~~I~L~Pif~~~~~~gY~~~dy~~id~~~Gt~~dfk~LV~~~H~~Gi~VilD~V~NHt 244 (583) T 1ea9_C 167 FGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583) T ss_dssp CCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 783899999858999976998899799873899999884457776845599999999999998789999999677667 No 232 >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Probab=53.89 E-value=8.7 Score=16.34 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=19.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 378999999998637875784175023 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) +.++++++++-|+++|+-||.|-++-+ T Consensus 110 t~~dfk~LV~~aH~~GikVilD~V~NH 136 (680) T 1cyg_A 110 TLSDFQRLVDAAHAKGIKVIIDFAPNH 136 (680) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTE T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999999999988999999989676 No 233 >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Probab=53.29 E-value=8.9 Score=16.28 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=7.5 Q ss_pred CCEEECCCCCEEEEEE Q ss_conf 9455358873078776 Q T0591 327 GVFARTPQAGSYLFPR 342 (406) Q Consensus 327 g~~~~~p~gg~~~w~~ 342 (406) .+++...+...++|.+ T Consensus 465 ~~~~~~~~~~v~af~R 480 (543) T 2zic_A 465 DFELLPTADKVFAYLR 480 (543) T ss_dssp CCEECCCCTTEEEEEE T ss_pred CEEEEECCCCEEEEEE T ss_conf 3699976997999999 No 234 >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Probab=53.29 E-value=8.9 Score=16.28 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=16.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 37899999999863787578417502 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) +.++++++++-|+++|+-||.|-++. T Consensus 106 t~~dfk~LV~~aH~~GIkVilD~V~N 131 (686) T 1qho_A 106 NWTTFDTLVNDAHQNGIKVIVDFVPN 131 (686) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTT T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 99999999999998799999998667 No 235 >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Probab=52.82 E-value=9 Score=16.23 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=25.0 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 37899999999863787578417502355 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) +.++++++++-|+++|+-||.|-+|.++. T Consensus 368 ~~~efk~lV~~~H~~GI~VIlDvV~NHt~ 396 (877) T 3faw_A 368 RIAELKQLIHDIHKRGMGVILDVVYNHTA 396 (877) T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCCS T ss_pred CHHHHHHHHHHHCCCCCEEEEEEEECCCC T ss_conf 89999998876412577468734430343 No 236 >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus HB8} Probab=52.33 E-value=9.2 Score=16.18 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHCCCEEEECCCC Q ss_conf 89999999986378757841750 Q T0591 198 EEIGQIAALAARYGATVIADQLY 220 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y 220 (406) ++++++++-|+++|+-||.|-++ T Consensus 97 ~d~~~lv~~aH~~Gi~VilD~V~ 119 (475) T 2z1k_A 97 EALRHLLEVAHAHGVRVILDGVF 119 (475) T ss_dssp HHHHHHHHHHHHTTCEEEEEECC T ss_pred HHHHHHHHHHHHCCCEEEEEECC T ss_conf 99999999996668689998314 No 237 >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} Probab=52.02 E-value=9.3 Score=16.14 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=15.8 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 233443789999999986378757 Q T0591 191 AGVVYSAEEIGQIAALAARYGATV 214 (406) Q Consensus 191 TG~~~s~~~l~~i~~~a~~~~~~i 214 (406) || ++.+...+--++.+++|+.+ T Consensus 153 TG--Ls~~~f~~~n~~~k~~gi~t 174 (372) T 2p0o_A 153 TG--IGTTFFNEKNRWLKELGLQV 174 (372) T ss_dssp CS--BCHHHHHHHHHHHHHTTCEE T ss_pred CC--CCHHHHHHHHHHHHHCCCCE T ss_conf 78--89999999999999779968 No 238 >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Probab=51.06 E-value=9.6 Score=16.04 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=9.4 Q ss_pred CCEEECCCCCEEEEEEC Q ss_conf 94553588730787766 Q T0591 327 GVFARTPQAGSYLFPRL 343 (406) Q Consensus 327 g~~~~~p~gg~~~w~~~ 343 (406) .+.....+.+.++|.+. T Consensus 334 ~~~~~~~~~~v~~f~R~ 350 (424) T 2dh2_A 334 DFHAFSAGPGLFSYIRH 350 (424) T ss_dssp EEEEEBCCTTEEEEEEE T ss_pred CEEEEECCCCEEEEEEE T ss_conf 56999779969999999 No 239 >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Probab=50.77 E-value=9.7 Score=16.01 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=17.0 Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECC Q ss_conf 540342156664323344378999999998637-87578417 Q T0591 178 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARY-GATVIADQ 218 (406) Q Consensus 178 ~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~-~~~ii~De 218 (406) ...+++.++|. +|.....+.+. +++.++ ++.-|-|. T Consensus 151 ~lPiiiYn~P~--~~~~~~~~~~~---~ll~~~pni~giKds 187 (344) T 2hmc_A 151 EIPAVIYNSPY--YGFATRADLFF---ALRAEHKNLVGFKEF 187 (344) T ss_dssp TSCEEEEEBGG--GTBCCCHHHHH---HHHHHCTTEEEEEEC T ss_pred CCCEEEECCCC--CCCCCCHHHHH---HHHHCCCCEEEEEEC T ss_conf 99668751665--56677889999---998429998999989 No 240 >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Probab=50.48 E-value=9.8 Score=15.98 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=16.1 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 378999999998637875784175023 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) +.++++++++-|+++|+.||.|-++.+ T Consensus 68 t~~d~~~lv~~~H~~Gi~VilD~V~nH 94 (441) T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLPIHH 94 (441) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTB T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 999999999999987998999503454 No 241 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=50.42 E-value=9.8 Score=15.98 Aligned_cols=131 Identities=12% Similarity=0.177 Sum_probs=66.3 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) .++|| |++.+| ..+...|...|-.|++.+-.-..........|.+...+.+|.. |.+++++.++. T Consensus 29 ~alVT-Gas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~lg~~~~~~~~Dv~---------~~~~v~~~~~~~~~~ 98 (266) T 3grp_A 29 KALVT-GATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLS---------DRKSIKQLAEVAERE 98 (266) T ss_dssp EEEES-STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTT---------SHHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHHHHHHHHH T ss_conf 89993-88868999999999987999999979999999999983997799980179---------999999999999997 Q ss_pred --CCEEEECCCCC-CCCC--CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCH Q ss_conf --54034215666-4323--344378999999998637875784175023556888765223321026786899850400 Q T0591 178 --GARVFLFSNPN-NPAG--VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 252 (406) Q Consensus 178 --~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 252 (406) +.. ++++|-. ++.+ .-++.++++++.++--. +.+.+.-. .++........++|.+.|.+- T Consensus 99 ~G~iD-iLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~-~~~~~~~~-------------~~~~m~~~~~G~II~isS~~~ 163 (266) T 3grp_A 99 MEGID-ILVNNAGITRDGLFVRMQDQDWDDVLAVNLT-AASTLTRE-------------LIHSMMRRRYGRIINITSIVG 163 (266) T ss_dssp HTSCC-EEEECCCCC-----CCCHHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHHTCEEEEEECCC-- T ss_pred CCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHHHCCCCEEEEECCHHH T ss_conf 39985-9998986666787101999999999998746-89999999-------------999998769918999867665 Q ss_pred HCCCCC Q ss_conf 104631 Q T0591 253 TESLSG 258 (406) Q Consensus 253 ~~~~~G 258 (406) ..+.|+ T Consensus 164 ~~~~~~ 169 (266) T 3grp_A 164 VVGNPG 169 (266) T ss_dssp -----C T ss_pred CCCCCC T ss_conf 578999 No 242 >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Probab=50.38 E-value=9.8 Score=15.97 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=41.7 Q ss_pred CCCCCHHHHHHHHCC----CCEEEECC----CCCC----CC------CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 667788999998502----54034215----6664----32------33443789999999986378757841750235 Q T0591 163 RAGLDLTGLEEAFKA----GARVFLFS----NPNN----PA------GVVYSAEEIGQIAALAARYGATVIADQLYSRL 223 (406) Q Consensus 163 ~~~~d~~~l~~~~~~----~~k~i~l~----~P~N----PT------G~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l 223 (406) .++-|+..+.+.+.. +..+|+|+ +|+| |+ ...-+.++++++++-|+++|+-||.|-++.+. T Consensus 167 ~~gGdl~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~gY~~~dy~~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHt 245 (585) T 1wzl_A 167 FYGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585) T ss_dssp CCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 6787999999999999982997799718834866568885556666877699899999999998689989997742666 No 243 >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Probab=49.80 E-value=10 Score=15.91 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 7899999999863787578417502355 Q T0591 197 AEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) .++++++++-|+++|+-||.|-+|.+.. T Consensus 531 ~~efk~LV~~aH~~GI~VIlDvV~NHt~ 558 (921) T 2wan_A 531 ITELKQLIQSLHQQRIGVNMDVVYNHTF 558 (921) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 8999999999963173589874045465 No 244 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=48.72 E-value=10 Score=15.80 Aligned_cols=139 Identities=14% Similarity=0.024 Sum_probs=65.7 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHH---HHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH--- Q ss_conf 078824872789-99999997200101013105513---89999982996999860446667766677889999985--- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFA---NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF--- 175 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~---~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~--- 175 (406) -|+|| |++.|| ..+...|...|-.|++.+=.=.. ....+...|.++..+++|.. |.+++++.+ T Consensus 9 ~vlIT-Gas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ei~~~g~~~~~~~~Dvs---------~~~~v~~~~~~i 78 (252) T 3h7a_A 9 TVAVI-GAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDAR---------NEDEVTAFLNAA 78 (252) T ss_dssp EEEEE-CCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTT---------CHHHHHHHHHHH T ss_pred EEEEE-CCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECC---------CCCCEEEEEEEC T ss_conf 99997-58369999999999987999999989999999999999862985999970023---------210001222110 Q ss_pred CC-CCEEEECCCC-CCCCCC--CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECC Q ss_conf 02-5403421566-643233--4437899999999863787578417502355688876522332102678689985040 Q T0591 176 KA-GARVFLFSNP-NNPAGV--VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 251 (406) Q Consensus 176 ~~-~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~S 251 (406) .. ...-++++|. .++.+. -++.++++++.++--. +.+.+.-. .++.+......++|.+.|.+ T Consensus 79 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~-~~~~~~~~-------------~~~~m~~~~~g~ii~isS~~ 144 (252) T 3h7a_A 79 DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACW-AGFVSGRE-------------SARLMLAHGQGKIFFTGATA 144 (252) T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHHTCEEEEEEEEGG T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHHHCCCCCCEEEECHH T ss_conf 23323340000343356755555899999999987633-23566655-------------02888742246605761464 Q ss_pred HHCCCCCCCCHHHHH Q ss_conf 010463112114332 Q T0591 252 KTESLSGYRLGVAFG 266 (406) Q Consensus 252 K~~~~~GlRiG~~~~ 266 (406) -..+.||+ ..|.++ T Consensus 145 ~~~~~~~~-~~Y~as 158 (252) T 3h7a_A 145 SLRGGSGF-AAFASA 158 (252) T ss_dssp GTCCCTTC-HHHHHH T ss_pred HCCCCCCC-HHHHHH T ss_conf 44789985-779999 No 245 >1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Enterococcus faecalis V583} SCOP: c.1.15.6 Probab=48.48 E-value=10 Score=15.78 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHCCCEEE Q ss_conf 99999999863787578 Q T0591 199 EIGQIAALAARYGATVI 215 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii 215 (406) .+++|+.+|.++|+.+- T Consensus 199 fL~~v~pvAEe~GV~la 215 (367) T 1tz9_A 199 FLERVIPVCEEENIKMG 215 (367) T ss_dssp HHHHHHHHHHHHTCEEE T ss_pred HHHHHHHHHHHCCCEEE T ss_conf 99999999998198899 No 246 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=47.75 E-value=2.4 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=11.0 Q ss_pred CCHHHHHHHHHHHHCCC Q ss_conf 88899999999998087 Q T0591 53 PTPGAFDLFSAGVQSGG 69 (406) Q Consensus 53 p~~~~~~~~~~~~~~~~ 69 (406) |.+.+.+++.++...+- T Consensus 73 p~~~v~~~~~e~~~~g~ 89 (457) T 2csu_A 73 PKRFVKDTLIQCGEKGV 89 (457) T ss_dssp CHHHHHHHHHHHHHHTC T ss_pred CHHHHHHHHHHHHHCCC T ss_conf 78998999999998499 No 247 >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Probab=47.28 E-value=11 Score=15.66 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=24.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCC Q ss_conf 3789999999986378757841750235 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRL 223 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l 223 (406) +.++++++++-|+++|+-||.|-++.+. T Consensus 161 t~~d~~~Lv~~aH~~GI~VilD~V~NHt 188 (628) T 1g5a_A 161 TIGDLREVIAALHEAGISAVVDFIFNHT 188 (628) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9999999999999886989999897768 No 248 >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Probab=47.11 E-value=11 Score=15.64 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=72.4 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) .+++-+|++.+| ..+.+.|...|-.|++.+-.-..........+.+...+++|.. |.+++++.++. T Consensus 30 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvs---------~~~~v~~~~~~~~~~ 100 (277) T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVS---------DEQQIIAMVDACVAA 100 (277) T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTT---------CHHHHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 98999388868999999999987999999978889999999983996499992079---------999999999999997 Q ss_pred --CCEEEECCCCC-CCCC--CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCH Q ss_conf --54034215666-4323--344378999999998637875784175023556888765223321026786899850400 Q T0591 178 --GARVFLFSNPN-NPAG--VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 252 (406) Q Consensus 178 --~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 252 (406) +.. ++++|-. ++.+ .-++.++++++.++=- .+.+.+.-.+ ++.+......++|.+.|.+- T Consensus 101 ~G~iD-iLVnNAG~~~~~~~~~~~~e~w~~~~~vNl-~g~~~~~~~~-------------~p~m~~~~~G~IVnisS~~~ 165 (277) T 3gvc_A 101 FGGVD-KLVANAGVVHLASLIDTTVEDFDRVIAINL-RGAWLCTKHA-------------APRMIERGGGAIVNLSSLAG 165 (277) T ss_dssp HSSCC-EEEECCCCCCCBCTTTCCHHHHHHHHHHHH-HHHHHHHHHH-------------HHHHHHTTCEEEEEECCGGG T ss_pred CCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHH-------------HHHHHHCCCCEEEEEECHHH T ss_conf 49998-999899889999904499999999999981-9999999999-------------99999859956999826554 Q ss_pred HCCCCCCCCHHHHHH Q ss_conf 104631121143325 Q T0591 253 TESLSGYRLGVAFGS 267 (406) Q Consensus 253 ~~~~~GlRiG~~~~~ 267 (406) ..+.|| ...|.++. T Consensus 166 ~~~~~~-~~~Y~asK 179 (277) T 3gvc_A 166 QVAVGG-TGAYGMSK 179 (277) T ss_dssp TSCCTT-BHHHHHHH T ss_pred CCCCCC-CHHHHHHH T ss_conf 778999-77899999 No 249 >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Probab=46.95 E-value=11 Score=15.63 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=59.5 Q ss_pred CEEECCCCCCCCCCC---HHHHHHHHHHHHCCCCCCCCCCC-----C----CHHHH---HHHHHHHHHHCCCCCCCCCEE Q ss_conf 334156786788788---89999999999808788887888-----8----98899---999999998648867886707 Q T0591 40 PVDFSHGDVDAHEPT---PGAFDLFSAGVQSGGVQAYTEYR-----G----DLGIR---DLLAPRLAAFTGAPVDARDGL 104 (406) Q Consensus 40 ~i~ls~G~pd~~~p~---~~~~~~~~~~~~~~~~~~Y~~~~-----G----~~~Lr---~aia~~~~~~~g~~~~~~~~I 104 (406) +|.+..|.|+..-|. ++.++...+.-.+.....|.... + +.+|. +.+|.+|.+. |+. +.|.| T Consensus 4 ~~~~~~~~p~~~~p~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-Gv~--~Gd~V 80 (549) T 3g7s_A 4 ELKYKIGFPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-GVR--KGEHV 80 (549) T ss_dssp CCSSCCCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-TCC--TTCEE T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHC-CCC--CCCEE T ss_conf 134678938998989999999999999789963999577775677785765999999999999999975-969--98999 Q ss_pred EEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHH--HHHHHHHHCCEEEEEE Q ss_conf 882487278999999997200101013105513--8999998299699986 Q T0591 105 IITPGTQGALFLAVAATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQ 153 (406) Q Consensus 105 ~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~--~~~~~~~~g~~~v~v~ 153 (406) .+-...+--...++.++..-|-..+..+|.+.. ....++.++.+.+-+. T Consensus 81 ai~~~n~~e~~~~~lA~~~~G~v~v~i~~~~~~~~l~~~l~~~~~~~li~~ 131 (549) T 3g7s_A 81 GVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVH 131 (549) T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEE T ss_pred EEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 999189799999999999859499987999999999999985687679960 No 250 >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Probab=46.88 E-value=11 Score=15.62 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=40.1 Q ss_pred CCCCHHHHHHHHC---C-CCEEEECC----CCCC----------CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 6778899999850---2-54034215----6664----------32334437899999999863787578417502355 Q T0591 164 AGLDLTGLEEAFK---A-GARVFLFS----NPNN----------PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 164 ~~~d~~~l~~~~~---~-~~k~i~l~----~P~N----------PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) ++-|+..+.+.+. + +..+|+|+ +|+| +....-+.++++++++-|+++|+-||.|-+|.+.. T Consensus 171 ~gGdl~Gi~~kLdyLk~LGvt~I~L~Pi~~~~~~~GY~~~dy~~vd~~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~ 249 (588) T 1j0h_A 171 FGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCG 249 (588) T ss_dssp CCCCHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 7848999998458998779988997998779887898856767758355999999999999998799899987235675 No 251 >1q7b_A 3-ketoacyl-acyl, 3-oxoacyl-[acyl-carrier protein] reductase; oxoacyl reductase, NADP+, oxidoreductase; HET: NAP; 2.05A {Escherichia coli} SCOP: c.2.1.2 PDB: 1i01_A* 1q7c_A* 2cf2_E Probab=45.92 E-value=11 Score=15.52 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=49.4 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) .++|| |++.+| ..+...|...|-.|++.+-.-..........+.+...+.+|.. |.+++++.+.. T Consensus 7 ~alIT-Gas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dv~---------~~~~v~~~~~~~~~~ 76 (244) T 1q7b_A 7 IALVT-GASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVT---------DPASIESVLEKIRAE 76 (244) T ss_dssp EEEES-SCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTT---------CHHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 99994-88878999999999986999999979889999999985788669999669---------999999999999998 Q ss_pred --CCEEEECCCC-CCCCC--CCCCHHHHHHHHHH Q ss_conf --5403421566-64323--34437899999999 Q T0591 178 --GARVFLFSNP-NNPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 178 --~~k~i~l~~P-~NPTG--~~~s~~~l~~i~~~ 206 (406) +... +++|. .++.+ .-++.++++++.++ T Consensus 77 ~g~iD~-lVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (244) T 1q7b_A 77 FGEVDI-LVNNAGITRDNLLMRMKDEEWNDIIET 109 (244) T ss_dssp TCSCSE-EEECCCCCCCCCGGGCCHHHHHHHHHH T ss_pred HCCCEE-EEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 299539-998784156753113248999999876 No 252 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Probab=45.71 E-value=12 Score=15.50 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=60.2 Q ss_pred HHHHHHHHHHHHCCCC----CCCCCEEEEECCCC-----HHHHHHHHHHHHCCHHHHHH--HCCCHHHHHHHHHHCCEEE Q ss_conf 9999999999864886----78867078824872-----78999999997200101013--1055138999998299699 Q T0591 82 IRDLLAPRLAAFTGAP----VDARDGLIITPGTQ-----GALFLAVAATVARGDKVAIV--QPDYFANRKLVEFFEGEMV 150 (406) Q Consensus 82 Lr~aia~~~~~~~g~~----~~~~~~I~it~G~~-----~~l~~~~~~l~~pGd~Vl~~--~P~y~~~~~~~~~~g~~~v 150 (406) +++.+-+.+....+.. ......|++..|.+ .-+.-+..-+...|-.|++. +.+-++...+++.++ +.+ T Consensus 74 v~k~v~e~L~~~l~~~~~~~~~~~p~VIl~vG~~G~GKTTT~aKLA~~~~~~g~kv~lva~Dt~R~aA~eQL~~~a-~~~ 152 (425) T 2ffh_A 74 ILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLG-EKV 152 (425) T ss_dssp HHHHHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHH-HHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH-HHC T ss_conf 9999999998510654334346897389997688888120699999999865982568844556464899999999-970 Q ss_pred EEEECCCCCCCCCCCCCHHHHHH-----HHCCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC Q ss_conf 98604466677666778899999-----850254034215666-43233443789999999986378757841750 Q T0591 151 PVQLDYVSADETRAGLDLTGLEE-----AFKAGARVFLFSNPN-NPAGVVYSAEEIGQIAALAARYGATVIADQLY 220 (406) Q Consensus 151 ~v~~~~~~~~~~~~~~d~~~l~~-----~~~~~~k~i~l~~P~-NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y 220 (406) .||+... ..+-|+..+.. +-..+..++++-+.. +++-. --.+++++|.+.+..+.++++.|..- T Consensus 153 ~vp~~~~-----~~~~dp~~i~~~~~~~ak~~~~DvilIDTAGR~~~d~-~lm~EL~~i~~~~~p~e~~LVlda~~ 222 (425) T 2ffh_A 153 GVPVLEV-----MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDE-PLMGELARLKEVLGPDEVLLVLDAMT 222 (425) T ss_dssp TCCEEEC-----CTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH-HHHHHHHHHHHHHCCSEEEEEEEGGG T ss_pred CCCEECC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 9841235-----6777878999999999763489879996787414289-99999999998628865999842455 No 253 >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Probab=45.61 E-value=12 Score=15.49 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=16.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 378999999998637875784175023 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) +.++++++++-|+++|+-||.|-++.+ T Consensus 82 t~~dfk~Lv~~~H~~Gi~VilD~V~NH 108 (449) T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNH 108 (449) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSE T ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 999999999999987999999863265 No 254 >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Probab=45.48 E-value=12 Score=15.48 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=26.4 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCC Q ss_conf 4437899999999863787578417502355 Q T0591 194 VYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406) Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406) .-+.++++++++-|+++|+-||.|-+|.+.. T Consensus 178 ~g~~~~~~~~v~~~h~~gi~vi~D~v~nh~~ 208 (637) T 1gjw_A 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAA 208 (637) T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEEECTTEEE T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 8899999999999998799999963234467 No 255 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=45.08 E-value=12 Score=15.44 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=48.0 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) -++|| |++.+| ..+...|...|..|++.+=.-..........+.+...+++|.. |.+++++.++. T Consensus 9 ~alIT-Gas~GIG~aiA~~la~~G~~V~~~~r~~~~l~~~~~e~~~~~~~~~~Dvt---------~~~~v~~~~~~~~~~ 78 (260) T 1nff_A 9 VALVS-GGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVT---------QPAQWKAAVDTAVTA 78 (260) T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTT---------CHHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 89993-88878999999999987998999979889999999985187079997379---------999999999999997 Q ss_pred --CCEEEECCCC-CCCCCC--CCCHHHHHHHHHH Q ss_conf --5403421566-643233--4437899999999 Q T0591 178 --GARVFLFSNP-NNPAGV--VYSAEEIGQIAAL 206 (406) Q Consensus 178 --~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~ 206 (406) +..+ +++|- .++.+. -++.++++++.++ T Consensus 79 ~G~iDi-lvnnAG~~~~~~~~~~~~e~~~~~~~v 111 (260) T 1nff_A 79 FGGLHV-LVNNAGILNIGTIEDYALTEWQRILDV 111 (260) T ss_dssp HSCCCE-EEECCCCCCCBCTTTSCHHHHHHHHHH T ss_pred CCCCCE-EEECCCCCCCCCCHHCCHHHHHHHHHH T ss_conf 499989-998999999998023999999999999 No 256 >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Probab=44.84 E-value=12 Score=15.41 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=39.9 Q ss_pred CCCCCCHHHHHHHHC----CCCEEEECCCC-CCCCC-----------------CCCCHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 666778899999850----25403421566-64323-----------------344378999999998637875784175 Q T0591 162 TRAGLDLTGLEEAFK----AGARVFLFSNP-NNPAG-----------------VVYSAEEIGQIAALAARYGATVIADQL 219 (406) Q Consensus 162 ~~~~~d~~~l~~~~~----~~~k~i~l~~P-~NPTG-----------------~~~s~~~l~~i~~~a~~~~~~ii~De~ 219 (406) ..++-|+..+.+.+. =+..+|+|+-+ -||.+ ..-+.++++++++-|+++|+-||.|-+ T Consensus 141 ~~~gGDl~GI~~kLdYLk~LGvtaIwL~Pi~e~~~~~~syhGY~~~Dy~~VDp~fGt~edf~~Lv~~aH~~GikVIlD~V 220 (601) T 3edf_A 141 GRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVV 220 (601) T ss_dssp SCCCCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEEC T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 87760799999851999975998899699837888888899957666786472449999999999999878998999971 Q ss_pred CCCC Q ss_conf 0235 Q T0591 220 YSRL 223 (406) Q Consensus 220 Y~~l 223 (406) +.+. T Consensus 221 ~NH~ 224 (601) T 3edf_A 221 LSHI 224 (601) T ss_dssp CSBC T ss_pred CCCC T ss_conf 4777 No 257 >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Probab=44.38 E-value=12 Score=15.37 Aligned_cols=94 Identities=10% Similarity=0.114 Sum_probs=45.9 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 078824872789-9999999720010101310551389999982996999860446667766677889999985025403 Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARV 181 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~ 181 (406) .++| +|++.+| ..+...|...|-.|++.+-.-..........+.....+.+|. -+.+++++.+++--++ T Consensus 16 ~alV-TGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv---------s~~~~v~~~~~~~g~i 85 (249) T 3f9i_A 16 TSLI-TGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNL---------ANKEECSNLISKTSNL 85 (249) T ss_dssp EEEE-TTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCT---------TSHHHHHHHHHTCSCC T ss_pred EEEE-ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCC---------CCHHHHHHHHHHHCCC T ss_conf 8999-38787899999999998799999997999999999998566834998789---------9999999999975999 Q ss_pred -EECCCCC-CCCC--CCCCHHHHHHHHHH Q ss_conf -4215666-4323--34437899999999 Q T0591 182 -FLFSNPN-NPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 182 -i~l~~P~-NPTG--~~~s~~~l~~i~~~ 206 (406) ++++|-. ++-+ .-++.++++++.++ T Consensus 86 DilVnnAG~~~~~~~~~~~~~~~~~~~~v 114 (249) T 3f9i_A 86 DILVCNAGITSDTLAIRMKDQDFDKVIDI 114 (249) T ss_dssp SEEEECCC-------------CHHHHHHH T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHH T ss_conf 89998997667788123999999999998 No 258 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=44.33 E-value=8.9 Score=16.25 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 7999999999999999856 Q T0591 387 HEAAVAAARRIVTLVERYR 405 (406) Q Consensus 387 ~e~l~~al~rl~~~~~~~r 405 (406) -+++++|.++..+.+++.+ T Consensus 405 G~t~~eA~~~A~~a~~~I~ 423 (451) T 2yrx_A 405 GETLAKAKEKAYEQLAAID 423 (451) T ss_dssp ESSHHHHHHHHHHHHTTCB T ss_pred ECCHHHHHHHHHHHHCCCC T ss_conf 0999999999999854667 No 259 >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Probab=44.13 E-value=12 Score=15.34 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=37.0 Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 6667788999998502540342156664323344378999999998637875784 Q T0591 162 TRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 162 ~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) .+|-+|.-++.++..-+..++++. ..+++.++++++.+.|+..|+-+++ T Consensus 107 KDFIid~~QI~ea~~~GAdaiLLI------~~~L~~~~l~~l~~~a~~lGle~Lv 155 (251) T 1i4n_A 107 KDFYIDTVQVKLASSVGADAILII------ARILTAEQIKEIYEAAEELGMDSLV 155 (251) T ss_dssp ECCCCSTHHHHHHHHTTCSEEEEE------GGGSCHHHHHHHHHHHHTTTCEEEE T ss_pred CCEEECHHHHHHHHHHCCCHHHHH------HHHCCHHHHHHHHHHHHHHCCEEEE T ss_conf 340305989999987057528899------8756999999999999985661453 No 260 >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Probab=42.93 E-value=11 Score=15.58 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=56.5 Q ss_pred CCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEE Q ss_conf 878888988--999999999986488678867078824872789999999972001010131055138999998299699 Q T0591 73 YTEYRGDLG--IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMV 150 (406) Q Consensus 73 Y~~~~G~~~--Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v 150 (406) .+...-+|+ |++.|.- .+.+ .|.+..|++ ++..+...| .+..|...+..+|++.+ T Consensus 46 ~Gt~~l~p~~~L~eKI~l--~~~~--------~V~v~~GGt-----lfE~a~~qg--------~~~~y~~~~~~lGf~~i 102 (251) T 1qwg_A 46 WGTSAVIDRDVVKEKINY--YKDW--------GIKVYPGGT-----LFEYAYSKG--------KFDEFLNECEKLGFEAV 102 (251) T ss_dssp TTGGGGSCHHHHHHHHHH--HHTT--------TCEEEECHH-----HHHHHHHTT--------CHHHHHHHHHHHTCCEE T ss_pred CCEEEECCHHHHHHHHHH--HHHC--------CCEEECCCH-----HHHHHHHCC--------CHHHHHHHHHHCCCCEE T ss_conf 756513777999999999--9985--------992757967-----999999749--------69999999998599889 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHC----CCCEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 98604466677666778899999850----2540342156664323-344378999999998637875784 Q T0591 151 PVQLDYVSADETRAGLDLTGLEEAFK----AGARVFLFSNPNNPAG-VVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 151 ~v~~~~~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~P~NPTG-~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) .+--.. -.++.++..+.++ ..-+++.=.-.-+|.. ..++.+++-+.++-+-+.|.+.|. T Consensus 103 EiSdg~-------i~i~~~~~~~~I~~a~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~Vi 166 (251) T 1qwg_A 103 EISDGS-------SDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVI 166 (251) T ss_dssp EECCSS-------SCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEE T ss_pred EECCCC-------CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 975985-------6789899999999998589989514557888866555999999999999966885899 No 261 >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Probab=42.88 E-value=13 Score=15.21 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=18.1 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 378999999998637875784175023 Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) +.++++++++-|+++|+-||.|-++.+ T Consensus 105 t~~df~~Lv~~~H~~Gi~VilD~V~NH 131 (669) T 3k8k_A 105 TESDFDRLVTEAHNRGIKIYLDYVMNH 131 (669) T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSE T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999999999987998999979786 No 262 >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Probab=42.81 E-value=13 Score=15.21 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHCCCEEEE Q ss_conf 78999999998637875784 Q T0591 197 AEEIGQIAALAARYGATVIA 216 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~ 216 (406) .++.++|++.|+++++.+.+ T Consensus 103 ~~ea~~l~~~~~~~~~~~~v 122 (336) T 2p2s_A 103 LEQLDAVQRRVAETGRKFAV 122 (336) T ss_dssp HHHHHHHHHHHHHHCCCEEE T ss_pred CCHHHHHHHHHHHCCCCCCC T ss_conf 31028999998740234422 No 263 >1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22 Probab=42.37 E-value=13 Score=15.16 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=70.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHH---HHHHCCHH--HHHHHCCCHHHHHHHHHHCCEE Q ss_conf 888898899999999998648867886707882487278999999---99720010--1013105513899999829969 Q T0591 75 EYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVA---ATVARGDK--VAIVQPDYFANRKLVEFFEGEM 149 (406) Q Consensus 75 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~---~l~~pGd~--Vl~~~P~y~~~~~~~~~~g~~~ 149 (406) ...|.|+|.+.+..-..+. |-..+.=.++.....+.+.+.+++- .+...++. |+..+|-+..|...+..+|.+. T Consensus 21 ~~~~~p~l~~~~~~~~~~~-~~~~~~l~El~l~~~~~~~l~LL~P~L~~Ls~~~~~RWi~wIaPP~~p~a~~L~~~GI~~ 99 (161) T 1oft_A 21 ASNGAPLLDDVIDSPSSAS-IEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNR 99 (161) T ss_dssp -----------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCG T ss_pred CCCCCCCHHHHHCCCCCCC-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCH T ss_conf 2679842055505898755-578650111120687375899999999998652568459998799988999999869994 Q ss_pred EEEEE-CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 99860-4466677666778899999850254034215666432334437899999999863787578 Q T0591 150 VPVQL-DYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI 215 (406) Q Consensus 150 v~v~~-~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii 215 (406) -.+-+ +.. .. .-.+-.+|++++-++-..+++-+.+ ++...++++--.|++.+...+ T Consensus 100 ~rlLiV~~~--~~---~daLWa~EqaLrsg~~~aVl~W~~~-----l~~~~~RRLQlAA~~g~t~~~ 156 (161) T 1oft_A 100 ERILLLQAK--DN---AAALALSCEALRLGRSHTVVSWLEP-----LSRAARKQLSRAAQLGQAQSL 156 (161) T ss_dssp GGEEEECCS--ST---THHHHHHHHHHHTTCEEEEEECCSS-----CCHHHHHHHHHHHHHTTCEEE T ss_pred HHEEEEECC--CH---HHHHHHHHHHHHCCCCCEEEECCCC-----CCHHHHHHHHHHHHHCCCEEE T ss_conf 158999789--84---8899999999865886389976877-----995899999999984798699 No 264 >2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Probab=42.18 E-value=13 Score=15.19 Aligned_cols=41 Identities=7% Similarity=-0.008 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHCCCC---CCCCC-EEEEECCCCHHHHHHHHHHH Q ss_conf 89999999999864886---78867-07882487278999999997 Q T0591 81 GIRDLLAPRLAAFTGAP---VDARD-GLIITPGTQGALFLAVAATV 122 (406) Q Consensus 81 ~Lr~aia~~~~~~~g~~---~~~~~-~I~it~G~~~~l~~~~~~l~ 122 (406) +....|++-..+ ||.. .+... +|.+..-.++-+..++..|. T Consensus 113 e~LR~LcDi~EK-yGsGl~~~~gstGdI~llG~~te~le~i~~eL~ 157 (437) T 2v4j_A 113 DYLRQLCDIWDL-RGSGLTNMHGSTGDIVLLGTQTPQLEEIFFELT 157 (437) T ss_dssp HHHHHHHHHHHH-HSCSEEESCCTTSCEEEECCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-HCCCEEEEECCCCCEEEECCCHHHHHHHHHHHH T ss_conf 999999999998-688826662688888995587688779999986 No 265 >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Probab=41.22 E-value=13 Score=15.05 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=16.6 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEC Q ss_conf 2156664323344378999999998637--8757841 Q T0591 183 LFSNPNNPAGVVYSAEEIGQIAALAARY--GATVIAD 217 (406) Q Consensus 183 ~l~~P~NPTG~~~s~~~l~~i~~~a~~~--~~~ii~D 217 (406) +++-|+.|++..+. +-.+++++..|.. +.+|++. T Consensus 137 l~NEP~~~~~~~~~-~~~~~~~~aIR~~dp~~~I~v~ 172 (343) T 1ceo_A 137 LLNQVVEPDSTRWN-KLMLECIKAIREIDSTMWLYIG 172 (343) T ss_dssp CCSCCCCSSSHHHH-HHHHHHHHHHHHHCSSCCEEEE T ss_pred ECCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEC T ss_conf 11023884277999-9999999999864899579967 No 266 >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Probab=41.17 E-value=13 Score=15.04 Aligned_cols=34 Identities=35% Similarity=0.271 Sum_probs=15.9 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC Q ss_conf 4323344378999999998637875784175023 Q T0591 189 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSR 222 (406) Q Consensus 189 NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~ 222 (406) ||+......++..++++.|+++|+.|+.|--|++ T Consensus 51 ~P~~~~~~l~~~~~~~~~a~~~Gm~vll~~hysd 84 (332) T 1hjs_A 51 NPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSD 84 (332) T ss_dssp SCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSS T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 7987635599999999999978996999724478 No 267 >1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Probab=41.03 E-value=14 Score=15.03 Aligned_cols=27 Identities=4% Similarity=-0.205 Sum_probs=11.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 1566643233443789999999986378 Q T0591 184 FSNPNNPAGVVYSAEEIGQIAALAARYG 211 (406) Q Consensus 184 l~~P~NPTG~~~s~~~l~~i~~~a~~~~ 211 (406) ++-|+..+...+. +-.+++++..++.+ T Consensus 131 ~NEP~~~~~~~~~-~~~~~~~~~Ir~~~ 157 (305) T 1h1n_A 131 DNEYHDMDQTLVL-NLNQAAIDGIRSAG 157 (305) T ss_dssp CSCCCSSCHHHHH-HHHHHHHHHHHHTT T ss_pred CCCCCCCCHHHHH-HHHHHHHHHHHHHC T ss_conf 3477764066899-99999999998508 No 268 >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 1g6c_A* 1g4e_A* 1g69_A* 1g4s_A* 1g4p_A* 1g67_A* Probab=40.96 E-value=14 Score=15.02 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=32.1 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEECC Q ss_conf 89999985025403421566643233443-7899999999863787578417 Q T0591 168 LTGLEEAFKAGARVFLFSNPNNPAGVVYS-AEEIGQIAALAARYGATVIADQ 218 (406) Q Consensus 168 ~~~l~~~~~~~~k~i~l~~P~NPTG~~~s-~~~l~~i~~~a~~~~~~ii~De 218 (406) ++.+++++..+.+++-+=.++.+....-. .+..+++.++|+++++.+|+++ T Consensus 34 ~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~l~~~~~~~liInd 85 (227) T 2tps_A 34 VTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVND 85 (227) T ss_dssp HHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEES T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC T ss_conf 9999999987998999867998868999999999999999998399899928 No 269 >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Probab=40.17 E-value=14 Score=14.94 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=12.5 Q ss_pred CCCCEEECCCCCCCC-CCCHHHHHHHHHHHHCCCC Q ss_conf 898334156786788-7888999999999980878 Q T0591 37 EGRPVDFSHGDVDAH-EPTPGAFDLFSAGVQSGGV 70 (406) Q Consensus 37 ~~~~i~ls~G~pd~~-~p~~~~~~~~~~~~~~~~~ 70 (406) .-..|++.+...... .+.-..++.+.+...+.++ T Consensus 52 g~N~VR~~~~~~~~~~~~~~~~~d~~v~~a~~~Gl 86 (464) T 1wky_A 52 GANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNL 86 (464) T ss_dssp TCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTC T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 99789986568875476189999999999997799 No 270 >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Probab=39.11 E-value=14 Score=14.83 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=51.9 Q ss_pred HHCCH--HHHHHHCCCHHHHHHHHHHCCEE--EEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCH Q ss_conf 72001--01013105513899999829969--998604466677666778899999850254034215666432334437 Q T0591 122 VARGD--KVAIVQPDYFANRKLVEFFEGEM--VPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 197 (406) Q Consensus 122 ~~pGd--~Vl~~~P~y~~~~~~~~~~g~~~--v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~ 197 (406) ++||. .-+.--|+|.+...+....+.+. +.||-. .-++.++++...++|++++.+-+=|. . T Consensus 45 V~P~k~G~~v~GiPvy~SV~da~~~~~~d~aiI~vPa~----------~v~~ai~ea~~~gik~~Viit~Gf~e-----~ 109 (305) T 2fp4_A 45 TTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPP----------FAAAAINEAIDAEVPLVVCITEGIPQ-----Q 109 (305) T ss_dssp ECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH----------HHHHHHHHHHHTTCSEEEECCCCCCH-----H T ss_pred ECCCCCCCEEECCCCCCCHHHHHHCCCCCEEEECCCHH----------HHHHHHHHHHHCCCCEEEEECCCCCC-----C T ss_conf 47998872542733525399997311653477514879----------98999999875557789993489874-----2 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 899999999863787578417502 Q T0591 198 EEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) +..+...+.++++++.||==++.+ T Consensus 110 ~~~~~~~~~a~~~g~riiGPNc~G 133 (305) T 2fp4_A 110 DMVRVKHRLLRQGKTRLIGPNCPG 133 (305) T ss_dssp HHHHHHHHHTTCSSCEEECSSSCE T ss_pred CHHHHHHHHHHCCCCEEECCCCCC T ss_conf 259999998753796897899876 No 271 >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} Probab=38.97 E-value=15 Score=14.82 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=8.8 Q ss_pred CCEEEEEECCHHCCCCC Q ss_conf 86899850400104631 Q T0591 242 ENVVTIMGPSKTESLSG 258 (406) Q Consensus 242 ~~~i~~~S~SK~~~~~G 258 (406) +.+|.+.|.+=.++.+| T Consensus 384 ~~iV~~SS~a~~~g~~g 400 (511) T 2z5l_A 384 DAFVLFSSVTGTWGNAG 400 (511) T ss_dssp CCEEEEEEGGGTTCCTT T ss_pred CEEEEECCCHHCCCCCC T ss_conf 88999786032368999 No 272 >2wc7_A Alpha amylase, catalytic region; debranching enzyme, CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullulanse; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Probab=38.85 E-value=15 Score=14.80 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=6.4 Q ss_pred CEEECCCCCEEEEEE Q ss_conf 455358873078776 Q T0591 328 VFARTPQAGSYLFPR 342 (406) Q Consensus 328 ~~~~~p~gg~~~w~~ 342 (406) +.+..++...++|.+ T Consensus 406 ~~~~~~~~~v~~~~R 420 (488) T 2wc7_A 406 YQVLYAQGQLYLFAR 420 (488) T ss_dssp EEEEEEETTEEEEEE T ss_pred EEEEEECCCEEEEEE T ss_conf 499982897999999 No 273 >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Probab=38.84 E-value=15 Score=14.80 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=13.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHH----HHHHC--CCEEEEC Q ss_conf 1566643233443789999999----98637--8757841 Q T0591 184 FSNPNNPAGVVYSAEEIGQIAA----LAARY--GATVIAD 217 (406) Q Consensus 184 l~~P~NPTG~~~s~~~l~~i~~----~a~~~--~~~ii~D 217 (406) ++-|+.+.....+.+.+....+ ..++. +.+|+++ T Consensus 149 ~NEP~~~~~~~~~~~~~~~~~~~~~~air~~~p~~~Iiv~ 188 (341) T 1vjz_A 149 INEPPFPDPQIMSVEDHNSLIKRTITEIRKIDPERLIIID 188 (341) T ss_dssp SSCCCCCBTTTBCHHHHHHHHHHHHHHHHHHCTTCCEEEE T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 2146777665304677999999999986503998189987 No 274 >1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A Probab=38.58 E-value=15 Score=14.78 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=36.4 Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 6667788999998502540342156664323344378999999998637875784 Q T0591 162 TRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 162 ~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) .+|-+|.-++.++..-+..++++. -.+++.++++++.+.|++.|+-.++ T Consensus 109 KDFIid~~QI~ea~~~GADavLLI------~~~L~~~~L~~l~~~a~~lgl~~Lv 157 (247) T 1a53_A 109 KDFIVKESQIDDAYNLGADTVLLI------VKILTERELESLLEYARSYGMEPLI 157 (247) T ss_dssp ESCCCSHHHHHHHHHHTCSEEEEE------GGGSCHHHHHHHHHHHHTTTCCCEE T ss_pred CCCCCCHHHHHHHHHHCCCEEEHH------HHCCCHHHHHHHHHHHHHHCCEEEE T ss_conf 345688999999998277611022------4203188889999999984995688 No 275 >1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Probab=37.93 E-value=15 Score=14.71 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=47.9 Q ss_pred CCCCCCCHHHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCHHHHHHHHHHH-HCCHHHHHHHCCCHHHHHHHHHHCCEEE Q ss_conf 8788889889999999999-8648867886707882487278999999997-2001010131055138999998299699 Q T0591 73 YTEYRGDLGIRDLLAPRLA-AFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMV 150 (406) Q Consensus 73 Y~~~~G~~~Lr~aia~~~~-~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~-~pGd~Vl~~~P~y~~~~~~~~~~g~~~v 150 (406) |-...|.-..|-+...-.. .+.|. ..+.+.|+..++++.|+.+++.+-. +-.-.|.++.-.-......++.+|++++ T Consensus 133 ~~nPtGSfKdRga~~~I~~A~~~G~-l~pg~tVveaSsGN~G~alA~~aa~~G~~~~IvmP~~~s~~k~~~lr~~GAeVi 211 (435) T 1jbq_A 133 FFNAGGSVKDRISLRMIEDAERDGT-LKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIV 211 (435) T ss_dssp GGSTTSBTHHHHHHHHHHHHHHHTC-SCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEE T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEE T ss_conf 8997668199999999999997499-889999999796799999999999819967999557662899999996297799 Q ss_pred EEEEC Q ss_conf 98604 Q T0591 151 PVQLD 155 (406) Q Consensus 151 ~v~~~ 155 (406) .++.. T Consensus 212 ~v~~~ 216 (435) T 1jbq_A 212 RTPTN 216 (435) T ss_dssp ECCC- T ss_pred EECCC T ss_conf 91687 No 276 >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (mtsase); 1.90A {Sulfolobus tokodaii str} Probab=37.32 E-value=15 Score=14.65 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=13.8 Q ss_pred CCCEEEEEECC----------CCCCCHHHHHHHHHHH Q ss_conf 87307877668----------8788989999999986 Q T0591 334 QAGSYLFPRLP----------KLAVAPAEFVKILRLQ 360 (406) Q Consensus 334 ~gg~~~w~~~~----------~~~~~~~~~~~~Ll~~ 360 (406) +-.||.|.++- ..+.+..+|-....+. T Consensus 392 dt~fyry~rl~s~nevG~~p~~~~~~~~~fh~~~~~r 428 (704) T 3hje_A 392 DTVLFIYNRLISLNEVGSDLHYYSISCDKFHEFNLKR 428 (704) T ss_dssp TTGGGTCCSCGGGCSTTCCTTCSCCCHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHH T ss_conf 3056777777664035878120289999999999870 No 277 >2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A Probab=37.27 E-value=15 Score=14.64 Aligned_cols=24 Identities=13% Similarity=0.468 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHCCC-EEEECCCC Q ss_conf 7899999999863787-57841750 Q T0591 197 AEEIGQIAALAARYGA-TVIADQLY 220 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~-~ii~De~Y 220 (406) ...+.++.++++++|. +++.||++ T Consensus 247 ~~f~~rv~~~~~~~Gk~~~~W~Dml 271 (627) T 2epl_X 247 CQHLERVLDIADKYGFNCQMWSDMF 271 (627) T ss_dssp HHHHHHHHHHHHHTTCEEEEESGGG T ss_pred HHHHHHHHHHHHHCCCEEEEECHHH T ss_conf 9999999999998899899962672 No 278 >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Probab=36.79 E-value=16 Score=14.59 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHCCCEEEECC Q ss_conf 899999999863787578417 Q T0591 198 EEIGQIAALAARYGATVIADQ 218 (406) Q Consensus 198 ~~l~~i~~~a~~~~~~ii~De 218 (406) +.++++++.|.++|+++|.|- T Consensus 90 ~~v~~vV~~a~~~g~yVIlD~ 110 (364) T 1g01_A 90 DLVYEGIELAFEHDMYVIVDW 110 (364) T ss_dssp HHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEE T ss_conf 999999999997899899984 No 279 >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Probab=36.46 E-value=16 Score=14.56 Aligned_cols=68 Identities=15% Similarity=0.032 Sum_probs=39.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH------HCCEEEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 7078824872789999999972001010131055138999998------2996999860446667766677889999985 Q T0591 102 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF------FEGEMVPVQLDYVSADETRAGLDLTGLEEAF 175 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~------~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~ 175 (406) |-|+|.+-...-...+ ...++.|-.|+|+-|--.....+-++ .|. .+.|.. ..+|.+....+++.+ T Consensus 65 DaV~I~tp~~~H~~~~-~~al~~GkhVl~EKPla~~~~e~~~l~~~a~~~~~-~~~v~~------~~Rf~p~~~~~k~~i 136 (323) T 1xea_A 65 DAVMIHAATDVHSTLA-AFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQ-PLYVGF------NRRHIPLYNQHLSEL 136 (323) T ss_dssp SEEEECSCGGGHHHHH-HHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTC-CEEEEC------GGGCCHHHHHHCHHH T ss_pred CEEEEECCCCCCCCCC-CCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCEEEE------CCCCCHHHHHHHHHH T ss_conf 9999603432112233-21123221333034533105664135666764155-311201------122599999999999 Q ss_pred CC Q ss_conf 02 Q T0591 176 KA 177 (406) Q Consensus 176 ~~ 177 (406) +. T Consensus 137 ~~ 138 (323) T 1xea_A 137 AQ 138 (323) T ss_dssp HH T ss_pred HC T ss_conf 77 No 280 >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Probab=36.28 E-value=13 Score=15.22 Aligned_cols=25 Identities=8% Similarity=-0.047 Sum_probs=14.8 Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 3344378999999998637875784 Q T0591 192 GVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 192 G~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) +...+.++.+...+...+++.-+.. T Consensus 151 ~~~~~~~R~~g~~~~~~~~~~~~~~ 175 (309) T 2fvy_A 151 GHPDAEARTTYVIKELNDKGIKTEQ 175 (309) T ss_dssp TCHHHHHHHHHHHHHHHHTTCCEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEE T ss_conf 7721889998899999851777503 No 281 >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* Probab=35.82 E-value=16 Score=14.49 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=58.8 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHH-HHH-HH--CCCH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 078824872789-9999999720010-101-31--0551---38999998299699986044666776667788999998 Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDK-VAI-VQ--PDYF---ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA 174 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~-Vl~-~~--P~y~---~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~ 174 (406) -++|| |++.+| ..+...|...|.. +++ .. |.-. .....++..|.++..+.+|. -|.+++++. T Consensus 228 t~lIt-Gg~gGIG~~la~~La~~g~~~vvL~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv---------~d~~~v~~~ 297 (486) T 2fr1_A 228 TVLVT-GGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDV---------TDRESVREL 297 (486) T ss_dssp EEEEE-TTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCT---------TCHHHHHHH T ss_pred EEEEE-CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECC---------CCHHHHHHH T ss_conf 89997-99995599999999985994125420255235789999999984298389995027---------999999999 Q ss_pred HC---CC--CEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 50---25--40342156664323--3443789999999986378757841750235568887652233210267868998 Q T0591 175 FK---AG--ARVFLFSNPNNPAG--VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTI 247 (406) Q Consensus 175 ~~---~~--~k~i~l~~P~NPTG--~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~ 247 (406) +. .. ...++.+.-....+ .-.+.++++++.+. +-.+.+.+ ++ .......+.+|.+ T Consensus 298 ~~~i~~~~~i~~vih~AG~~~~~~~~~~~~~~~~~~~~~-kv~g~~~L-~~----------------~~~~~~~~~~v~~ 359 (486) T 2fr1_A 298 LGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRA-KVLGARNL-HE----------------LTRELDLTAFVLF 359 (486) T ss_dssp HHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHH-HHHHHHHH-HH----------------HHTTSCCSEEEEE T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHH-HHHHHHHH-HH----------------HHHHCCCCEEEEE T ss_conf 999998589639998776656652554248899999988-88999999-99----------------9762058809997 Q ss_pred EECCHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 504001046311211433258999999 Q T0591 248 MGPSKTESLSGYRLGVAFGSRAIIARM 274 (406) Q Consensus 248 ~S~SK~~~~~GlRiG~~~~~~~~i~~l 274 (406) .|.+-.++.+|. ..|..++ .+++.+ T Consensus 360 SS~a~~~g~~g~-~~YaAAn-a~ld~l 384 (486) T 2fr1_A 360 SSFASAFGAPGL-GGYAPGN-AYLDGL 384 (486) T ss_dssp EEHHHHTCCTTC-TTTHHHH-HHHHHH T ss_pred CCCHHCCCCCCC-HHHHHHH-HHHHHH T ss_conf 770313689997-8899999-999999 No 282 >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Probab=35.29 E-value=17 Score=14.44 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=51.2 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC---- Q ss_conf 078824872789-999999972001010131055138999998299699986044666776667788999998502---- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~---- 177 (406) -++|| |++.+| ..+...|...|-.|++.+-.-.......+..+.+...+++|.. |.+++++.++. T Consensus 14 valIT-Gas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---------~~~~~~~~~~~~~~~ 83 (265) T 2o23_A 14 VAVIT-GGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVT---------SEKDVQTALALAKGK 83 (265) T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTT---------CHHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC---------CHHHHHHHHHHHHHH T ss_conf 89992-86878999999999987998999969878899999982896699982259---------999999877679987 Q ss_pred --CCEEEECCCC--CCC-------CCCCCCHHHHHHHHHH Q ss_conf --5403421566--643-------2334437899999999 Q T0591 178 --GARVFLFSNP--NNP-------AGVVYSAEEIGQIAAL 206 (406) Q Consensus 178 --~~k~i~l~~P--~NP-------TG~~~s~~~l~~i~~~ 206 (406) +... +++|- +++ .....+.++++++.++ T Consensus 84 ~g~id~-lv~nag~~~~~~~~~~~~~~~~~~e~~~~~~~v 122 (265) T 2o23_A 84 FGRVDV-AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDV 122 (265) T ss_dssp HSCCCE-EEECCCCCCCCCSEETTTTEECCHHHHHHHHHH T ss_pred CCCCCE-ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 288532-124455557786323343443889999999988 No 283 >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Probab=34.89 E-value=17 Score=14.39 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=28.2 Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 7788999998502540342156664323344378999999998637875784 Q T0591 165 GLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 165 ~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) ..+.+.+.+.-..-.|+++.-+|..+. ....+.++++.+.|+++|+.++. T Consensus 111 ~~sv~~~~~~GadaVK~lv~~~~de~~--~~~~~~l~~l~~~c~~~g~p~ll 160 (304) T 1to3_A 111 KINAQAVKRDGAKALKLLVLWRSDEDA--QQRLNMVKEFNELCHSNGLLSII 160 (304) T ss_dssp SCCHHHHHHTTCCEEEEEEEECTTSCH--HHHHHHHHHHHHHHHTTTCEEEE T ss_pred CCCHHHHHHCCCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCEEE T ss_conf 568999986388889998624876569--99999999999999873997389 No 284 >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Probab=34.53 E-value=17 Score=14.36 Aligned_cols=142 Identities=16% Similarity=0.064 Sum_probs=66.8 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHH-----HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC Q ss_conf 078824872789-99999997200101013105513899999-----829969998604466677666778899999850 Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 176 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~-----~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~ 176 (406) -++|| |++.|| ..+...|...|-.|++.+-.-........ ..|.++..+.+|.. |.+++++.++ T Consensus 10 valVT-Gas~GIG~aiA~~la~~G~~Vvl~~r~~~~l~~~~~~l~~~~~~~~v~~~~~Dvt---------~~~~v~~~~~ 79 (319) T 3ioy_A 10 TAFVT-GGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVA---------SREGFKMAAD 79 (319) T ss_dssp EEEEE-TTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTT---------CHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC---------CHHHHHHHHH T ss_conf 89993-8888899999999998799899998988899999999985178970899966789---------9999999999 Q ss_pred C------CCEEEECCCCC-CCCCC--CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH---HCCCCCCE Q ss_conf 2------54034215666-43233--4437899999999863787578417502355688876522332---10267868 Q T0591 177 A------GARVFLFSNPN-NPAGV--VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE---AAVDAENV 244 (406) Q Consensus 177 ~------~~k~i~l~~P~-NPTG~--~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~---~~~~~~~~ 244 (406) . +.. ++++|-. ++.|. -++.++++++.++-- .+.+.+.-.+. +.+... ......++ T Consensus 80 ~~~~~~g~iD-iLVnNAG~~~~~~~~~~~~~~~~~~~~vNl-~g~~~~~~~~~----------p~m~~~~~~~~~~~G~I 147 (319) T 3ioy_A 80 EVEARFGPVS-ILCNNAGVNLFQPIEESSYDDWDWLLGVNL-HGVVNGVTTFV----------PRMVERVKAGEQKGGHV 147 (319) T ss_dssp HHHHHTCCEE-EEEECCCCCCCCCGGGCCHHHHHHHHHHHT-HHHHHHHHHHH----------HHHHHHHHTTSCCCCEE T ss_pred HHHHHCCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHH----------HHHHHHHHHCCCCCEEE T ss_conf 9999739975-899888768998826599999868986752-75999999999----------99998765336997699 Q ss_pred EEEEECCHHCCCCCCCCHHHHHH Q ss_conf 99850400104631121143325 Q T0591 245 VTIMGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 245 i~~~S~SK~~~~~GlRiG~~~~~ 267 (406) |.+.|.+-..+.||. ..|..+. T Consensus 148 vnisS~~g~~~~~~~-~~Y~asK 169 (319) T 3ioy_A 148 VNTASMAAFLAAGSP-GIYNTTK 169 (319) T ss_dssp EEECCGGGTCCCSSS-HHHHHHH T ss_pred EEEECHHHCCCCCCC-HHHHHHH T ss_conf 998466657789987-7899999 No 285 >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Probab=34.34 E-value=17 Score=14.34 Aligned_cols=139 Identities=11% Similarity=0.047 Sum_probs=71.0 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCC-CHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC--- Q ss_conf 078824872789-99999997200101013105-5138999998299699986044666776667788999998502--- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPD-YFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~-y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~--- 177 (406) .++|| |++.+| ..+...|...|-.|++.+-. -......++..|.+...+.+|.. |.+++++.++. T Consensus 9 valIT-Gas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~g~~~~~~~~Dv~---------d~~~~~~~~~~~~~ 78 (249) T 2ew8_A 9 LAVIT-GGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS---------QPGDVEAFGKQVIS 78 (249) T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT---------CHHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCC---------CHHHHHHHHHHHHH T ss_conf 89992-888689999999999879989999799308999999965995799994189---------99999999999999 Q ss_pred ---CCEEEECCCC-CCCCCC--CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECC Q ss_conf ---5403421566-643233--4437899999999863787578417502355688876522332102678689985040 Q T0591 178 ---GARVFLFSNP-NNPAGV--VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 251 (406) Q Consensus 178 ---~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~S 251 (406) +.. ++++|- -+|.+. -++.++++++.++-- .+.+.+.-.+ ++.+......++|.+.|.+ T Consensus 79 ~~G~iD-ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl-~~~~~~~~~~-------------~p~m~~~~~G~Iv~isS~~ 143 (249) T 2ew8_A 79 TFGRCD-ILVNNAGIYPLIPFDELTFEQWKKTFEINV-DSGFLMAKAF-------------VPGMKRNGWGRIINLTSTT 143 (249) T ss_dssp HHSCCC-EEEECCCCCCCCCGGGCCHHHHHHHHHHHT-HHHHHHHHHH-------------HHHHHHHTCEEEEEECCGG T ss_pred HCCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHH-------------HHHHHHCCCCEEEEECCHH T ss_conf 759998-999899889999916699999999999973-7699999986-------------8999866996488806634 Q ss_pred HHCCCCCCCCHHHHHH Q ss_conf 0104631121143325 Q T0591 252 KTESLSGYRLGVAFGS 267 (406) Q Consensus 252 K~~~~~GlRiG~~~~~ 267 (406) =..+.++ ...|..+. T Consensus 144 ~~~~~~~-~~~Y~asK 158 (249) T 2ew8_A 144 YWLKIEA-YTHYISTK 158 (249) T ss_dssp GGSCCSS-CHHHHHHH T ss_pred HCCCCCC-CHHHHHHH T ss_conf 3468998-57899999 No 286 >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810} Probab=31.70 E-value=19 Score=14.05 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=44.6 Q ss_pred EEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCE-- Q ss_conf 78824872789-999999972001010131055138999998299699986044666776667788999998502540-- Q T0591 104 LIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGAR-- 180 (406) Q Consensus 104 I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k-- 180 (406) |+|| |++.|| ..+...|...|..|++..=.=..........+.+...+.+|. -+.+++++.+....+ T Consensus 4 vlIT-GassGIG~aiA~~la~~G~~V~l~~R~~~~l~~~~~~~~~~~~~~~~Dl---------~~~~~~~~~~~~~~~~~ 73 (230) T 3guy_A 4 IVIT-GASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDL---------ASHQEVEQLFEQLDSIP 73 (230) T ss_dssp EEEE-STTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCT---------TCHHHHHHHHHSCSSCC T ss_pred EEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEC---------CCHHHHHHHHHHHCCCC T ss_conf 9990-7886999999999998899899998999999999998444557897325---------89999999999862768 Q ss_pred EEECCCCCCCC-C--CCCCHHHHHHHHHH Q ss_conf 34215666432-3--34437899999999 Q T0591 181 VFLFSNPNNPA-G--VVYSAEEIGQIAAL 206 (406) Q Consensus 181 ~i~l~~P~NPT-G--~~~s~~~l~~i~~~ 206 (406) -++++|-.... + .-.+.++++++.++ T Consensus 74 d~linnaG~~~~~~~~~~~~~~~~~~~~v 102 (230) T 3guy_A 74 STVVHSAGSGYFGLLQEQDPEQIQTLIEN 102 (230) T ss_dssp SEEEECCCCCCCSCGGGSCHHHHHHHHHH T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHH T ss_conf 69997786667888134999999999999 No 287 >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 Probab=31.57 E-value=19 Score=14.04 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=21.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH Q ss_conf 88788889889999999999864886788670788248727 Q T0591 72 AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG 112 (406) Q Consensus 72 ~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 112 (406) .+|++.+.....+.++++..+. +.. ....|+||.|+|. T Consensus 11 ~~pep~~~~~~~~~~~~f~~~~-~~~--g~kiVLITsGgT~ 48 (313) T 1p9o_A 11 EFPQPPGAARWAEVMARFAARL-GAQ--GRRVVLVTSGGTK 48 (313) T ss_dssp ---------CHHHHHHHHHHHH-HHT--TCCEEEEEESBCE T ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHC--CCEEEEEECCCCC T ss_conf 5899766899999999997434-643--9818999068855 No 288 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=31.16 E-value=19 Score=13.99 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=17.7 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 437899999999863787578417502 Q T0591 195 YSAEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) .+.++.++++++|+++++.+.+..-+. T Consensus 106 ~~~~e~~~l~~~a~~~~~~~~v~~~~r 132 (362) T 1ydw_A 106 MNVTEFDKIVDACEANGVQIMDGTMWV 132 (362) T ss_dssp SSHHHHHHHHHHHHTTTCCEEECCCGG T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 003677889987631343321112232 No 289 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=31.10 E-value=19 Score=13.99 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=58.0 Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHH----HHHHHHHCCEEEEEEECCCCCC Q ss_conf 99999986488678867078824872789-999999972001010131055138----9999982996999860446667 Q T0591 86 LAPRLAAFTGAPVDARDGLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFAN----RKLVEFFEGEMVPVQLDYVSAD 160 (406) Q Consensus 86 ia~~~~~~~g~~~~~~~~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~----~~~~~~~g~~~v~v~~~~~~~~ 160 (406) +..|++..+.+ . ..-++|| |++.+| ..+...|...|-.|++.+-.-... .......|.++..+.+|.. T Consensus 9 ~~~~M~~lf~L--~-gK~alIT-Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dv~--- 81 (267) T 1vl8_A 9 HHHHMKEVFDL--R-GRVALVT-GGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVS--- 81 (267) T ss_dssp --------CCC--T-TCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT--- T ss_pred CHHHCCCCCCC--C-CCEEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCC--- T ss_conf 32432636378--9-9989994-898789999999999879989999798899999999999971994899984699--- Q ss_pred CCCCCCCHHHHHHHHCC------CCEEEECCCC-CCCCCC--CCCHHHHHHHHHH Q ss_conf 76667788999998502------5403421566-643233--4437899999999 Q T0591 161 ETRAGLDLTGLEEAFKA------GARVFLFSNP-NNPAGV--VYSAEEIGQIAAL 206 (406) Q Consensus 161 ~~~~~~d~~~l~~~~~~------~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~ 206 (406) +.+++++.++. +... +++|- -++.+. -++.+++++..++ T Consensus 82 ------~~~~v~~~~~~~~~~~g~iDi-LVnnAG~~~~~~~~~~~~e~~~~~~~v 129 (267) T 1vl8_A 82 ------NYEEVKKLLEAVKEKFGKLDT-VVNAAGINRRHPAEEFPLDEFRQVIEV 129 (267) T ss_dssp ------CHHHHHHHHHHHHHHHSCCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH T ss_pred ------CHHHHHHHHHHHHHHCCCCCE-EEECCCCCCCCCHHHCCHHHHHHHHHH T ss_conf ------999999999999997399989-998999899999155999999975331 No 290 >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, structural genomics; HET: NAP; 2.25A {Homo sapiens} Probab=30.99 E-value=19 Score=13.97 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=51.8 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCC----------CHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH Q ss_conf 078824872789-99999997200101013105----------5138999998299699986044666776667788999 Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPD----------YFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGL 171 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~----------y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l 171 (406) -++||. ++.+| ..+...|...|.+|++..=. .......++..|.+...+++|.. |.+++ T Consensus 47 valVTG-as~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~~Dvs---------d~~~v 116 (346) T 3kvo_A 47 TVFITG-ASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVR---------DEQQI 116 (346) T ss_dssp EEEEET-TTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTT---------CHHHH T ss_pred EEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC---------CHHHH T ss_conf 799907-88699999999999889989999797777899999999999999962984999983489---------99999 Q ss_pred HHHHCC------CCEEEECCCCC-CCCC--CCCCHHHHHHHHHH Q ss_conf 998502------54034215666-4323--34437899999999 Q T0591 172 EEAFKA------GARVFLFSNPN-NPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 172 ~~~~~~------~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~ 206 (406) ++++.. +..+ +++|-. ++.+ .-++.++++++.++ T Consensus 117 ~~~v~~~~~~~G~iDi-LVnNAG~~~~~~~~~~~~e~~~~~~~v 159 (346) T 3kvo_A 117 SAAVEKAIKKFGGIDI-LVNNASAISLTNTLDTPTKRLDLMMNV 159 (346) T ss_dssp HHHHHHHHHHHSCCCE-EEECCCCCCCCCTTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9999999998099778-998775445552101889999998888 No 291 >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Probab=30.90 E-value=19 Score=13.96 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=68.0 Q ss_pred CEEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHH---HHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 7078824872789-99999997200101013105513---8999998299699986044666776667788999998502 Q T0591 102 DGLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFA---NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA 177 (406) Q Consensus 102 ~~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~---~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~ 177 (406) +.+++-+|++.+| ..+...|...|-.|++.+-.-.. ....++..|.+...+.+|.. |.+++++.++. T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~---------~~~~v~~~~~~ 82 (256) T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVT---------DEQHREAVIKA 82 (256) T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT---------CHHHHHHHHHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC---------CHHHHHHHHHH T ss_conf 998999487868999999999987999999979889999999999964994899980189---------99999999999 Q ss_pred ------CCEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE Q ss_conf ------5403421566--64323344378999999998637875784175023556888765223321026786899850 Q T0591 178 ------GARVFLFSNP--NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG 249 (406) Q Consensus 178 ------~~k~i~l~~P--~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S 249 (406) +.. ++++|- ..|.-.-++.++++++.++--. +.+.+.-. .++.+......++|.+.| T Consensus 83 ~~~~~G~iD-iLVnnAG~~~~~~~e~~~~~~~~~~~vNl~-~~~~~~~~-------------~~~~m~~~~~G~II~isS 147 (256) T 3gaf_A 83 ALDQFGKIT-VLVNNAGGGGPKPFDMPMSDFEWAFKLNLF-SLFRLSQL-------------AAPHMQKAGGGAILNISS 147 (256) T ss_dssp HHHHHSCCC-EEEECCCCCCCCCTTCCHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHTTCEEEEEECC T ss_pred HHHHCCCCC-EEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHHHCCCCEEEEEEC T ss_conf 999749998-999899999998776999999999998749-99999999-------------999888759924999806 Q ss_pred CCHHCCCCCCCCHHHHHH Q ss_conf 400104631121143325 Q T0591 250 PSKTESLSGYRLGVAFGS 267 (406) Q Consensus 250 ~SK~~~~~GlRiG~~~~~ 267 (406) .+-..+.++. ..|.++. T Consensus 148 ~~~~~~~~~~-~~Y~asK 164 (256) T 3gaf_A 148 MAGENTNVRM-ASYGSSK 164 (256) T ss_dssp GGGTCCCTTC-HHHHHHH T ss_pred HHHCCCCCCC-HHHHHHH T ss_conf 4536789997-6899999 No 292 >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} Probab=30.77 E-value=20 Score=13.95 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCC-----HHHHHHHHHHHHHHCCCCCCCCCEEEEECC-C-CHHHHHHHHHHHHCC- Q ss_conf 9999999999808788887--88889-----889999999999864886788670788248-7-278999999997200- Q T0591 56 GAFDLFSAGVQSGGVQAYT--EYRGD-----LGIRDLLAPRLAAFTGAPVDARDGLIITPG-T-QGALFLAVAATVARG- 125 (406) Q Consensus 56 ~~~~~~~~~~~~~~~~~Y~--~~~G~-----~~Lr~aia~~~~~~~g~~~~~~~~I~it~G-~-~~~l~~~~~~l~~pG- 125 (406) +.++...+-+.+.+..+.- -..|+ .+=|+.+.+...+..+-.+ -|+.+.+ + .+++..+ +..-+-| T Consensus 33 ~~l~~~i~~l~~~Gv~Gi~i~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~----~vi~~~~~st~e~i~~a-~~a~~~G~ 107 (316) T 3e96_A 33 HHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRA----LVVAGIGYATSTAIELG-NAAKAAGA 107 (316) T ss_dssp HHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSS----EEEEEECSSHHHHHHHH-HHHHHHTC T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCC----EEEECCCCCHHHHHHHH-HHHHHCCC T ss_conf 99999999999769999996846446434899999999999999818985----28823466589999999-99997599 Q ss_pred HHHHHHHCCCH Q ss_conf 10101310551 Q T0591 126 DKVAIVQPDYF 136 (406) Q Consensus 126 d~Vl~~~P~y~ 136 (406) |.+++..|.|. T Consensus 108 d~i~v~~P~y~ 118 (316) T 3e96_A 108 DAVMIHMPIHP 118 (316) T ss_dssp SEEEECCCCCS T ss_pred CEEEECCCCCC T ss_conf 89994698567 No 293 >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, PSI, MCSG; 2.00A {Saccharomyces cerevisiae} Probab=30.55 E-value=20 Score=13.93 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=46.0 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHH--CCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC--- Q ss_conf 078824872789-999999972001010131--05513899999829969998604466677666778899999850--- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQ--PDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK--- 176 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~--P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~--- 176 (406) -++|| |++.+| ..+...|...|..|++.. -.-.....+...++.++.++++|.. +.+.+++.+. T Consensus 4 valIT-Ggs~GIG~aiA~~la~~Ga~v~i~~~~r~~~~~~~l~~~~~~~~~~~~~Dv~---------~~~~~~~~~~~~~ 73 (254) T 3kzv_A 4 VILVT-GVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDIT---------EDSVLKQLVNAAV 73 (254) T ss_dssp EEEEC-STTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTT---------SHHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC---------CHHHHHHHHHHHH T ss_conf 89994-7774999999999997799889997169999999999970995899980189---------9999999999999 Q ss_pred C---CCEEEECCCC--CCCCC--CCCCHHHHHHHHHH Q ss_conf 2---5403421566--64323--34437899999999 Q T0591 177 A---GARVFLFSNP--NNPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 177 ~---~~k~i~l~~P--~NPTG--~~~s~~~l~~i~~~ 206 (406) + +... +++|- .+|.+ ...+.++++++.++ T Consensus 74 ~~~g~id~-linnAg~~~~~~~~~~~~~~~~~~~~~v 109 (254) T 3kzv_A 74 KGHGKIDS-LVANAGVLEPVQNVNEIDVNAWKKLYDI 109 (254) T ss_dssp HHHSCCCE-EEEECCCCCCCTTTTSCCHHHHHHHHHH T ss_pred HHCCCCCE-ECCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 97599655-0135565778875334788887488874 No 294 >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Probab=30.52 E-value=14 Score=14.98 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=16.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCHHHHHHH Q ss_conf 7078824872789999999972001010131 Q T0591 102 DGLIITPGTQGALFLAVAATVARGDKVAIVQ 132 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~ 132 (406) |-|++++....++...+..+...|-.|++.+ T Consensus 59 DgIii~~~~~~~~~~~l~~a~~~gipvv~~d 89 (313) T 2h3h_A 59 NGIAIAPSDPTAVIPTIKKALEMGIPVVTLD 89 (313) T ss_dssp SEEEECCSSTTTTHHHHHHHHHTTCCEEEES T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCEEEEE T ss_conf 9999977622112599999997599869982 No 295 >2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Probab=28.86 E-value=21 Score=13.74 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHCC---CCCCCCCEEEEECCCCHHHHHHHHHHHH Q ss_conf 899999999998648---8678867078824872789999999972 Q T0591 81 GIRDLLAPRLAAFTG---APVDARDGLIITPGTQGALFLAVAATVA 123 (406) Q Consensus 81 ~Lr~aia~~~~~~~g---~~~~~~~~I~it~G~~~~l~~~~~~l~~ 123 (406) .|| .||+. .+.|| +..+...+|.+..-..+-+..++..+.. T Consensus 77 ~lr-~iadi-Adkyg~G~lr~TtRqnie~~~i~~~~l~~l~~~L~~ 120 (381) T 2v4j_B 77 HIR-EMCDI-ADKYCGGHLRFTTRNNVEFMVADEASLKALKEDLAS 120 (381) T ss_dssp HHH-HHHHH-HHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHHH T ss_pred HHH-HHHHH-HHHHCCCEEEEECCCCEEECCCCHHHHHHHHHHHHH T ss_conf 999-99999-998689834461687228566898999999999998 No 296 >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=28.80 E-value=21 Score=13.73 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=49.9 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHC-CCH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 078824872789-9999999720010101310-551---38999998299699986044666776667788999998502 Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQP-DYF---ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P-~y~---~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~ 177 (406) .++|| |++.+| ..+...|...|-.|++..= .=. .....++..|.+...+.+|.. |.+++++.++. T Consensus 10 ~alVT-Gas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs---------~~~~v~~~~~~ 79 (259) T 3edm_A 10 TIVVA-GAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLT---------NAAEVEAAISA 79 (259) T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTT---------CHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC---------CHHHHHHHHHH T ss_conf 89993-898689999999999879989998488267899999999972996899991389---------99999999999 Q ss_pred ------CCEEEECCCCC-C-CCC--CCCCHHHHHHHHHH Q ss_conf ------54034215666-4-323--34437899999999 Q T0591 178 ------GARVFLFSNPN-N-PAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 178 ------~~k~i~l~~P~-N-PTG--~~~s~~~l~~i~~~ 206 (406) +... +++|-. + |.+ .-++.++++++.++ T Consensus 80 ~~~~~G~iDi-lVnnAg~~~~~~~~~~~~~~~~~~~~~v 117 (259) T 3edm_A 80 AADKFGEIHG-LVHVAGGLIARKTIAEMDEAFWHQVLDV 117 (259) T ss_dssp HHHHHCSEEE-EEECCCCCCCCCCTTTCCHHHHHHHHHH T ss_pred HHHHHCCCCE-EEECCCCCCCCCCHHHCCHHHHHHHHHH T ss_conf 9998099989-9989987779999166999999999998 No 297 >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Probab=28.50 E-value=21 Score=13.70 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=7.5 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 88989999999986 Q T0591 347 AVAPAEFVKILRLQ 360 (406) Q Consensus 347 ~~~~~~~~~~Ll~~ 360 (406) +.+..+|-....+. T Consensus 417 ~~~~~~fh~~~~~r 430 (720) T 1iv8_A 417 KISPDQFHVFNQKR 430 (720) T ss_dssp CCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 79999999999985 No 298 >3bww_A Protein of unknown function DUF692/COG3220; YP_719350.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Haemophilus somnus 129PT} Probab=27.76 E-value=22 Score=13.61 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=32.2 Q ss_pred EECCCCC----CCCCCCCCHHHHHHHHHHHHHCCCEEEECC--CCCCCCCCCCCCCCHHHHHCCCCCCEEEEE Q ss_conf 4215666----432334437899999999863787578417--502355688876522332102678689985 Q T0591 182 FLFSNPN----NPAGVVYSAEEIGQIAALAARYGATVIADQ--LYSRLRYAGASYTHLRAEAAVDAENVVTIM 248 (406) Q Consensus 182 i~l~~P~----NPTG~~~s~~~l~~i~~~a~~~~~~ii~De--~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 248 (406) +++-||+ .| +..|++ .+=+.+++++.|+.++.|- +|..-.-.|. +.+.........++|+.++ T Consensus 136 lllEN~s~Y~~~~-~~~m~E--~eFl~~l~~~tgcgLLLDvnNvyvna~Nhg~-~Dp~~yL~~lPl~rV~eIH 204 (307) T 3bww_A 136 ISVENTSYYLHSE-TSTMNE--VEFLNAIVQEANCGIHLDVNNIYVNAVNHGL-LDPHVFIDNVDLKRVNYIH 204 (307) T ss_dssp CEEECCCCSCBCT-TCSSCH--HHHHHHHHHHHTCEEEEEHHHHHHHHHHHCC-SCHHHHHHHSCGGGEEEEE T ss_pred EEEECCHHHCCCC-CCCCCH--HHHHHHHHHHHCCEEEEEECHHHHHHHHCCC-CCHHHHHHHCCHHHHHHHH T ss_conf 6995424304788-787789--9999999996098099970156776430689-9999998738999877433 No 299 >7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside hydrolase family 5, michaelis complex, SKEW-BOAT, distortio; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Probab=27.60 E-value=22 Score=13.59 Aligned_cols=11 Identities=0% Similarity=0.093 Sum_probs=4.8 Q ss_pred HHHHHHHHHHC Q ss_conf 99999998637 Q T0591 200 IGQIAALAARY 210 (406) Q Consensus 200 l~~i~~~a~~~ 210 (406) .+++++..|+. T Consensus 155 ~~~~~~~IR~~ 165 (303) T 7a3h_A 155 AEEVIPIIRNN 165 (303) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHHC T ss_conf 99999998633 No 300 >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, schiff base, cytoplasm, diaminopimelate biosynthesis; HET: MES; 1.99A {Streptococcus pneumoniae} Probab=27.60 E-value=22 Score=13.59 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=21.9 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC Q ss_conf 034215666432334437899999999863787578417 Q T0591 180 RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQ 218 (406) Q Consensus 180 k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De 218 (406) .+++.++|.+ ||..++.+.+.+++ +..++.-|-|. T Consensus 136 pi~iYn~P~~-~g~~~~~e~l~~L~---~~~~ivgiK~s 170 (311) T 3h5d_A 136 PIIIYNIPGR-VVVELTPETMLRLA---DHPNIIGVKEC 170 (311) T ss_dssp CEEEEECHHH-HSSCCCHHHHHHHH---TSTTEEEEEEC T ss_pred CEEEEECCCC-CCCCCCHHHHHHHH---CCCCEEEEEEC T ss_conf 7899957751-37888799999985---47888877516 No 301 >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Probab=27.28 E-value=22 Score=13.55 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHCCCCCCC--CCCCCC-----HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH---HHHHHHHHHHHCC Q ss_conf 999999999980878888--788889-----889999999999864886788670788248727---8999999997200 Q T0591 56 GAFDLFSAGVQSGGVQAY--TEYRGD-----LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG---ALFLAVAATVARG 125 (406) Q Consensus 56 ~~~~~~~~~~~~~~~~~Y--~~~~G~-----~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~---~l~~~~~~l~~pG 125 (406) +.++...+-+.+.+..+. .-+.|+ .+=|..+.+...+.-+ . .-|+++.|+.. ++.++ +..-+-| T Consensus 29 ~~l~~~i~~li~~Gv~gi~v~GttGE~~~Ls~eEr~~l~~~~~~~~~-~----~~vi~gv~~~st~~~i~la-~~a~~~G 102 (313) T 3dz1_A 29 VSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAK-S----MQVIVGVSAPGFAAMRRLA-RLSMDAG 102 (313) T ss_dssp HHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCT-T----SEEEEECCCSSHHHHHHHH-HHHHHHT T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCC-C----CCEEEECCCCHHHHHHHHH-HHHHHCC T ss_conf 99999999999769998997658557344899999999988885359-9----4289953640158889999-9998668 Q ss_pred -HHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf -1010131055138999998299699986044666776667788999998502540342156664323344378999999 Q T0591 126 -DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIA 204 (406) Q Consensus 126 -d~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~ 204 (406) |.+++.-|+|......... ....+..+.....-+++.++|. .||..++.+.+.+|+ T Consensus 103 ad~~~v~pp~~~~~~~~~~~----------------------~f~~~~~a~~~~lPi~iYn~P~-~~g~~l~~~~~~~L~ 159 (313) T 3dz1_A 103 AAGVMIAPPPSLRTDEQITT----------------------YFRQATEAIGDDVPWVLQDYPL-TLSVVMTPKVIRQIV 159 (313) T ss_dssp CSEEEECCCTTCCSHHHHHH----------------------HHHHHHHHHCTTSCEEEEECHH-HHCCCCCHHHHHHHH T ss_pred CCEEECCCCCCCCCCHHHHH----------------------HHHHHHHHHCCCCCEEEECCCC-CCCCCCCHHHHHHHH T ss_conf 75674155201345415789----------------------9999997512577368863665-356565899999998 Q ss_pred HHHHHCCCEEEECCC Q ss_conf 998637875784175 Q T0591 205 ALAARYGATVIADQL 219 (406) Q Consensus 205 ~~a~~~~~~ii~De~ 219 (406) + .-.++..+-++. T Consensus 160 ~--~~pnvv~~K~~s 172 (313) T 3dz1_A 160 M--DSASCVMLKHED 172 (313) T ss_dssp H--HCSSEEEEEECC T ss_pred H--HCCCEEEEEECC T ss_conf 3--087648998578 No 302 >2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A Probab=26.51 E-value=23 Score=13.46 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=35.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH---HH---HCCEEEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 70788248727899999999720010101310551389999---98---2996999860446667766677889999985 Q T0591 102 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLV---EF---FEGEMVPVQLDYVSADETRAGLDLTGLEEAF 175 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~---~~---~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~ 175 (406) |-|+|..-...=... +...++.|-+|+|+-|.=.+...+- .. .|..+ .+.. ..+|.+....+.+.+ T Consensus 64 D~V~I~tp~~~H~~~-~~~al~~gkhV~~EKP~a~~~~ea~~l~~~a~~~~~~~-~vg~------~~r~~p~~~~~k~~i 135 (325) T 2ho3_A 64 DLVYIASPNSLHFAQ-AKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFI-FEAA------RNYHEKAFTTIKNFL 135 (325) T ss_dssp SEEEECSCGGGHHHH-HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE-EEEC------TTTTCHHHHHHHHHH T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCC------CCCCCCCHHHHHHHH T ss_conf 899992795454399-99998723413337984111101467777787613344-3221------012210022577766 Q ss_pred CCC Q ss_conf 025 Q T0591 176 KAG 178 (406) Q Consensus 176 ~~~ 178 (406) ..+ T Consensus 136 ~~g 138 (325) T 2ho3_A 136 ADX 138 (325) T ss_dssp TTS T ss_pred HHC T ss_conf 520 No 303 >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} Probab=26.38 E-value=23 Score=13.45 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.6 Q ss_pred EEEECCCCHHHHHHHHHHH Q ss_conf 7882487278999999997 Q T0591 104 LIITPGTQGALFLAVAATV 122 (406) Q Consensus 104 I~it~G~~~~l~~~~~~l~ 122 (406) ++++-|+-.-+..+++.+. T Consensus 66 lvi~iGGDGT~L~a~~~~~ 84 (292) T 2an1_A 66 LAVVVGGDGNMLGAARTLA 84 (292) T ss_dssp EEEECSCHHHHHHHHHHHT T ss_pred EEEEECCCCHHHHHHHHHC T ss_conf 8999778835988867642 No 304 >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolase, D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3jrk_A 3kao_A* Probab=25.09 E-value=24 Score=13.29 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=26.5 Q ss_pred HHHHHHHHCCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 899999850254034215666-4323344378999999998637875784 Q T0591 168 LTGLEEAFKAGARVFLFSNPN-NPAGVVYSAEEIGQIAALAARYGATVIA 216 (406) Q Consensus 168 ~~~l~~~~~~~~k~i~l~~P~-NPTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406) .+...+.-.+-.|+++.-+|. .|--..-..+.++++.+-|+++|+.++. T Consensus 116 v~~a~~~GadaVK~lv~~~pd~~~e~~~~q~~~l~~l~~~c~~~gip~ll 165 (332) T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFL 165 (332) T ss_dssp HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEE T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 99998625674799974489832889999999999999999974997299 No 305 >3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural genomics of infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A Probab=24.84 E-value=25 Score=13.26 Aligned_cols=44 Identities=14% Similarity=-0.073 Sum_probs=18.4 Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEE Q ss_conf 87278999999997200101013105513899999829969998 Q T0591 109 GTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPV 152 (406) Q Consensus 109 G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v 152 (406) .++.-+...++.+.+.|+.++++..+=.....++..+|++.+.+ T Consensus 12 ~~~~~~a~~fr~l~~~~~~l~~p~a~D~~SAri~e~aGf~ai~~ 55 (305) T 3ih1_A 12 STQEELANRFRALVEANEILQIPGAHDAMAALVARNTGFLALYL 55 (305) T ss_dssp CCHHHHHHHHHHHHHSSSCEEEEBCSSHHHHHHHHHTTCSCEEE T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEE T ss_conf 77899999999998279978982787889999999859999998 No 306 >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Probab=24.82 E-value=25 Score=13.26 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=65.1 Q ss_pred EEEEECCCCHHHH-HHHHHHHHCCHHHHHHHCCCHHHHH---HHH--HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC Q ss_conf 0788248727899-9999997200101013105513899---999--829969998604466677666778899999850 Q T0591 103 GLIITPGTQGALF-LAVAATVARGDKVAIVQPDYFANRK---LVE--FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 176 (406) Q Consensus 103 ~I~it~G~~~~l~-~~~~~l~~pGd~Vl~~~P~y~~~~~---~~~--~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~ 176 (406) .+++-+|++.+|= .+...|...|-.|++.+=.-..... .+. ..|.++..+.+|.. |.+++++.++ T Consensus 9 KvalVTGgs~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~g~~~~~~~~Dv~---------~~~~v~~~~~ 79 (265) T 3lf2_A 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVL---------DALQVRAFAE 79 (265) T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTT---------CHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC---------CHHHHHHHHH T ss_conf 9899948886999999999998799899997988999999999986468973999978889---------9999999999 Q ss_pred C------CCEEEECCCC-CCCCCC--CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 2------5403421566-643233--443789999999986378757841750235568887652233210267868998 Q T0591 177 A------GARVFLFSNP-NNPAGV--VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTI 247 (406) Q Consensus 177 ~------~~k~i~l~~P-~NPTG~--~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~ 247 (406) . +... +++|. .++.+. -++.+++++..++--. +.+.+.-. .++.+......++|.+ T Consensus 80 ~~~~~~g~iDi-lVnnag~~~~~~~~~~~~~~~~~~~~~Nl~-~~~~~~~~-------------~~p~m~~~~~g~Ii~i 144 (265) T 3lf2_A 80 ACERTLGCASI-LVNNAGQGRVSTFAETTDEAWSEELQLKFF-SVIHPVRA-------------FLPQLESRADAAIVCV 144 (265) T ss_dssp HHHHHHCSCSE-EEECCCCCCCBCTTTCCHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHTTSTTEEEEEE T ss_pred HHHHHCCCCCE-EEECCCCCCCCCHHHCCHHHHHHHHHHHHH-HHHHHHHH-------------HCHHHHHCCCCCEEEE T ss_conf 99997199719-997997789999166999999998867758-88877764-------------2546674558723898 Q ss_pred EECCHHCCCCCCCCHHHHHH Q ss_conf 50400104631121143325 Q T0591 248 MGPSKTESLSGYRLGVAFGS 267 (406) Q Consensus 248 ~S~SK~~~~~GlRiG~~~~~ 267 (406) .|..=..+.+| ...|.++. T Consensus 145 sS~~~~~~~~~-~~~Y~asK 163 (265) T 3lf2_A 145 NSLLASQPEPH-MVATSAAR 163 (265) T ss_dssp EEGGGTSCCTT-BHHHHHHH T ss_pred EEHHHCCCCCC-CHHHHHHH T ss_conf 41544678999-68899999 No 307 >3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B Probab=24.01 E-value=26 Score=13.16 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 7899999999863787578417502 Q T0591 197 AEEIGQIAALAARYGATVIADQLYS 221 (406) Q Consensus 197 ~~~l~~i~~~a~~~~~~ii~De~Y~ 221 (406) .+.-++|.+.|+++|+.+++|..-. T Consensus 26 g~~A~~I~~~A~~~gVPi~~d~~LA 50 (83) T 3bzy_B 26 DAKALQIIKLAELYDIPVIEDIPLA 50 (83) T ss_dssp THHHHHHHHHHHHTTCCEEECHHHH T ss_pred CHHHHHHHHHHHHCCCCEEECHHHH T ss_conf 7899999999998499688399999 No 308 >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Probab=23.66 E-value=26 Score=13.11 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=31.5 Q ss_pred EEEEECCCCHHHHHHHHHH-HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEE Q ss_conf 0788248727899999999-720010101310551389999982996999860 Q T0591 103 GLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL 154 (406) Q Consensus 103 ~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~ 154 (406) .|+..++++.++.++..+- .+-.-.|.++.-.-..-...++.+|++++.++- T Consensus 76 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~Ga~vi~~~~ 128 (323) T 1v71_A 76 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR 128 (323) T ss_dssp CEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT T ss_pred EEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHCCCEEEECC T ss_conf 14310343123455553202333313215653218999999982893799668 No 309 >2pc8_A Hypothetical protein XOG1; EXO-glucanase, carbohydrate binding, additional CH binding site, hydrolase; HET: BGC; 1.80A {Candida albicans} PDB: 2pb1_A* 2pbo_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Probab=23.31 E-value=26 Score=13.07 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=14.7 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECC Q ss_conf 73078776688788989999999986891896161 Q T0591 335 AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGT 369 (406) Q Consensus 335 gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~ 369 (406) .|+|.|---.. ....+.+-. + .+.|++-.|-+ T Consensus 358 ~Gw~~Ws~K~~-~~~eW~~~~-~-~~~G~ip~~~~ 389 (400) T 2pc8_A 358 GGWVFWSWKTE-NAPEWSFQT-L-TYNGLFPQPVT 389 (400) T ss_dssp TEEEESCSCCS-SCGGGCHHH-H-HHTTCSCSSTT T ss_pred CEEEEECCCCC-CCCCCCHHH-H-HHCCCCCCCCC T ss_conf 86999698639-897650377-8-73987089940 No 310 >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Probab=22.56 E-value=27 Score=12.97 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=61.1 Q ss_pred EEEECCCCHHH-HHHHHHHHHCCHHHHHHH-CCCH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC- Q ss_conf 78824872789-999999972001010131-0551---38999998299699986044666776667788999998502- Q T0591 104 LIITPGTQGAL-FLAVAATVARGDKVAIVQ-PDYF---ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA- 177 (406) Q Consensus 104 I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~-P~y~---~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~- 177 (406) |+| .|++.+| ..+.+.|...|.+|++.. -.-. .....+...|.+...+++|.. |.+.+++.++. T Consensus 4 vlI-TGas~GiG~aia~~la~~G~~vvi~~~r~~~~~~~~~~~~~~~g~~~~~~~~Dl~---------~~~~~~~~~~~~ 73 (244) T 1edo_A 4 VVV-TGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS---------KEADVEAMMKTA 73 (244) T ss_dssp EEE-TTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTT---------SHHHHHHHHHHH T ss_pred EEE-ECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCC---------CHHHHHHHHHHH T ss_conf 999-6988789999999999879989998189878999999999973991899970468---------878889999999 Q ss_pred -----CCEEEECCCCCC-CCC--CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE Q ss_conf -----540342156664-323--344378999999998637875784175023556888765223321026786899850 Q T0591 178 -----GARVFLFSNPNN-PAG--VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG 249 (406) Q Consensus 178 -----~~k~i~l~~P~N-PTG--~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S 249 (406) +.. ++++|... +.+ .-.+.+++++..++--. +.+.+... .++........++|.+.| T Consensus 74 ~~~~g~id-~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~-~~~~~~~~-------------~~~~~~~~~~g~Iv~isS 138 (244) T 1edo_A 74 IDAWGTID-VVVNNAGITRDTLLIRMKKSQWDEVIDLNLT-GVFLCTQA-------------ATKIMMKKRKGRIINIAS 138 (244) T ss_dssp HHHSSCCS-EEEECCCCCCCCCGGGCCHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHHTCEEEEEECC T ss_pred HHHCCCCC-EEEECCCCCCCCCCCCCCCHHHHHHCCCCCC-CHHHHHHH-------------HHHHHHHCCCCCEEEEEC T ss_conf 97279966-7740575654554334550022111230142-15645899-------------999754358986489845 Q ss_pred CCHHCCCCC Q ss_conf 400104631 Q T0591 250 PSKTESLSG 258 (406) Q Consensus 250 ~SK~~~~~G 258 (406) .+=..+.|| T Consensus 139 ~~~~~~~~~ 147 (244) T 1edo_A 139 VVGLIGNIG 147 (244) T ss_dssp THHHHCCTT T ss_pred HHHCCCCCC T ss_conf 766577898 No 311 >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Probab=22.38 E-value=27 Score=12.95 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHCCCCCCCCC--CCCC-----HHHHHHHHHHHHHHCCCCCCCCCEEEEECCC--CHHHHHHHHHHHHCC- Q ss_conf 99999999998087888878--8889-----8899999999998648867886707882487--278999999997200- Q T0591 56 GAFDLFSAGVQSGGVQAYTE--YRGD-----LGIRDLLAPRLAAFTGAPVDARDGLIITPGT--QGALFLAVAATVARG- 125 (406) Q Consensus 56 ~~~~~~~~~~~~~~~~~Y~~--~~G~-----~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~--~~~l~~~~~~l~~pG- 125 (406) +.++...+.+.+.+..+.-. +.|+ .+=|..+.+...+..+-. --|++..|+ .+++.++ +..-+-| T Consensus 33 ~~l~~~i~~l~~~Gv~gi~~~GstGE~~~Ls~eEr~~v~~~~~~~~~gr----~~vi~gvg~~t~~ai~la-~~a~~~Ga 107 (314) T 3d0c_A 33 KGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGR----ATVVAGIGYSVDTAIELG-KSAIDSGA 107 (314) T ss_dssp HHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTS----SEEEEEECSSHHHHHHHH-HHHHHTTC T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCC----CEEEEEECCCHHHHHHHH-HHHHHCCC T ss_conf 9999999999976999899684153743489999999999999981899----608976279899999999-99997599 Q ss_pred HHHHHHHCCCH Q ss_conf 10101310551 Q T0591 126 DKVAIVQPDYF 136 (406) Q Consensus 126 d~Vl~~~P~y~ 136 (406) |.|++..|+|. T Consensus 108 dav~v~pP~y~ 118 (314) T 3d0c_A 108 DCVMIHQPVHP 118 (314) T ss_dssp SEEEECCCCCS T ss_pred CEEEECCCCCC T ss_conf 98997378789 No 312 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=22.34 E-value=27 Score=12.94 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=49.6 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHH---HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC- Q ss_conf 078824872789-9999999720010101310551389999---98299699986044666776667788999998502- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLV---EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~---~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~- 177 (406) .+++-+|++.+| ..+...|...|-.|++.+-.-....... +..+.++..+++|.. |.+++++.++. T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~---------~~~~v~~~~~~~ 77 (257) T 3imf_A 7 KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVR---------NTDDIQKMIEQI 77 (257) T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTT---------CHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC---------CHHHHHHHHHHH T ss_conf 98999389868999999999987998999979899999999999856994899990389---------999999999999 Q ss_pred -----CCEEEECCCCC-CCCC--CCCCHHHHHHHHHH Q ss_conf -----54034215666-4323--34437899999999 Q T0591 178 -----GARVFLFSNPN-NPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 178 -----~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~ 206 (406) +.. ++++|.. ++.+ .-++.++++++.++ T Consensus 78 ~~~~G~iD-ilVnnAG~~~~~~~~~~~~~~~~~~~~v 113 (257) T 3imf_A 78 DEKFGRID-ILINNAAGNFICPAEDLSVNGWNSVINI 113 (257) T ss_dssp HHHHSCCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH T ss_pred HHHHCCCE-EEEECCCCCCCCCHHHCCHHHHHHHHHH T ss_conf 99819971-9998997778988365899999999998 No 313 >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Probab=22.05 E-value=28 Score=12.91 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHCCCEEEEC Q ss_conf 9999999986378757841 Q T0591 199 EIGQIAALAARYGATVIAD 217 (406) Q Consensus 199 ~l~~i~~~a~~~~~~ii~D 217 (406) ..+.+.+.+.+.+..++.. T Consensus 241 ~~~~~~~~a~~~~~~~~~~ 259 (487) T 2vos_A 241 VMEVLLAESVRADASVARE 259 (487) T ss_dssp HHHHHHHHHHHTTCEEEEB T ss_pred HHHHHHHHHHHCCCEEEEC T ss_conf 9999999997569626521 No 314 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=21.85 E-value=28 Score=12.88 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=67.9 Q ss_pred CEEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHH---HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 7078824872789-999999972001010131055138---999998299699986044666776667788999998502 Q T0591 102 DGLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFAN---RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA 177 (406) Q Consensus 102 ~~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~---~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~ 177 (406) ..|++-+|++.+| ..+...|...|-.|++.+-.-... ...+...|.+...+.+|.. |.+++++.++. T Consensus 28 gKvalITGas~GIG~aia~~la~~Ga~Vv~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs---------~~~~v~~~~~~ 98 (270) T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVN---------DATAVDALVES 98 (270) T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTT---------CHHHHHHHHHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECC---------CHHHHHHHHHH T ss_conf 998999287868999999999986999999979889999999999965994689997469---------99999999999 Q ss_pred ------CCEEEECCCC-CCCCC--CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEE Q ss_conf ------5403421566-64323--34437899999999863787578417502355688876522332102678689985 Q T0591 178 ------GARVFLFSNP-NNPAG--VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIM 248 (406) Q Consensus 178 ------~~k~i~l~~P-~NPTG--~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 248 (406) +.. ++++|- .++.+ .-++.++++++.++--. +.+.+.-. .++.+......++|.+. T Consensus 99 ~~~~~g~iD-iLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~-~~~~~~~~-------------~~~~m~~~~~G~II~is 163 (270) T 3ftp_A 99 TLKEFGALN-VLVNNAGITQDQLAMRMKDDEWDAVIDTNLK-AVFRLSRA-------------VLRPMMKARGGRIVNIT 163 (270) T ss_dssp HHHHHSCCC-EEEECCCCCCCBCTTTCCHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHHTCEEEEEEC T ss_pred HHHHHCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHHHHC-CHHHHHHH-------------HHHHHHHCCCCEEEEEE T ss_conf 999829966-8641463468874454489999999988712-52667999-------------99999985994899980 Q ss_pred ECCHHCCCCCCCCHHHHH Q ss_conf 040010463112114332 Q T0591 249 GPSKTESLSGYRLGVAFG 266 (406) Q Consensus 249 S~SK~~~~~GlRiG~~~~ 266 (406) |.+=..+.||. ..|.++ T Consensus 164 S~~~~~~~~~~-~~Y~as 180 (270) T 3ftp_A 164 SVVGSAGNPGQ-VNYAAA 180 (270) T ss_dssp CHHHHHCCTTB-HHHHHH T ss_pred CHHHCCCCCCC-HHHHHH T ss_conf 76764779997-899999 No 315 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=21.80 E-value=28 Score=12.87 Aligned_cols=137 Identities=21% Similarity=0.245 Sum_probs=66.5 Q ss_pred EEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHH----HHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC- Q ss_conf 78824872789-999999972001010131055138999----998299699986044666776667788999998502- Q T0591 104 LIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA- 177 (406) Q Consensus 104 I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~----~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~- 177 (406) ++|| |++.+| ..+...|...|..|++.+-.-...... .+..|.+...+.+|.. |.+++++.++. T Consensus 5 alIT-Gas~GIG~aiA~~la~~G~~V~i~~~~~~~l~~~~~~~~~~~g~~~~~~~~Dv~---------~~~~v~~~~~~~ 74 (250) T 2cfc_A 5 AIVT-GASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVA---------DEGDVNAAIAAT 74 (250) T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTT---------CHHHHHHHHHHH T ss_pred EEEC-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC---------CHHHHHHHHHHH T ss_conf 9992-889789999999999879989999898899999999999864994899981279---------999999999999 Q ss_pred -----CCEEEECCC----CCCCCCC--CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEE Q ss_conf -----540342156----6643233--44378999999998637875784175023556888765223321026786899 Q T0591 178 -----GARVFLFSN----PNNPAGV--VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVT 246 (406) Q Consensus 178 -----~~k~i~l~~----P~NPTG~--~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~ 246 (406) +.. ++++| +++|.+. -++.++++++.++--. +.+.+.-. .++.+......++|. T Consensus 75 ~~~~G~iD-iLVnnAGi~~~~~~~~~~~~~~~~~~~~~~vNl~-~~~~~~~~-------------~~~~m~~~~~G~Ii~ 139 (250) T 2cfc_A 75 MEQFGAID-VLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVR-GIFLGCRA-------------VLPHMLLQGAGVIVN 139 (250) T ss_dssp HHHHSCCC-EEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTH-HHHHHHHH-------------HHHHHHHHTCEEEEE T ss_pred HHHHCCCC-EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHH-------------CCCCCCCCCCCCCCC T ss_conf 99809987-9997553456788775211999999999999847-77766654-------------065322233344455 Q ss_pred EEECCHHCCCCCCCCHHHHH Q ss_conf 85040010463112114332 Q T0591 247 IMGPSKTESLSGYRLGVAFG 266 (406) Q Consensus 247 ~~S~SK~~~~~GlRiG~~~~ 266 (406) +.|.+-..+.||. ..|.++ T Consensus 140 isS~~~~~~~~~~-~~Y~as 158 (250) T 2cfc_A 140 IASVASLVAFPGR-SAYTTS 158 (250) T ss_dssp ECCGGGTSCCTTC-HHHHHH T ss_pred CCCCHHHCCCCCC-CHHHHH T ss_conf 5651221268985-045777 No 316 >2h1i_A Carboxylesterase; structural genomics, , PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.80A {Bacillus cereus atcc 14579} SCOP: c.69.1.14 Probab=21.62 E-value=28 Score=12.85 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=13.1 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC Q ss_conf 7886707882487278999999997200 Q T0591 98 VDARDGLIITPGTQGALFLAVAATVARG 125 (406) Q Consensus 98 ~~~~~~I~it~G~~~~l~~~~~~l~~pG 125 (406) +++ +.|++..-|+.|...+..++..|+ T Consensus 116 id~-~rv~l~G~S~Gg~~a~~~a~~~p~ 142 (226) T 2h1i_A 116 FDR-NNIVAIGYSNGANIAASLLFHYEN 142 (226) T ss_dssp CCT-TCEEEEEETHHHHHHHHHHHHCTT T ss_pred CCC-CEEEEEEECCHHHHHHHHHHHCCC T ss_conf 897-629999968138999999995655 No 317 >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Probab=21.60 E-value=28 Score=12.84 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=34.7 Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC Q ss_conf 677889999985025403421566643233443789999999986378757841750 Q T0591 164 AGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLY 220 (406) Q Consensus 164 ~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y 220 (406) +..+++.+++++..+.+++-+=.++-+..... +..+++.++|+++++.+|+++-+ T Consensus 25 ~~~~~~~i~~al~~Gv~~iqlR~k~~~~~~~~--~~a~~l~~~~~~~~~~liInd~~ 79 (215) T 1xi3_A 25 LKPEVESVREALEGGATAIQMRIKNAPTREMY--EIGKTLRQLTREYDALFFVDDRV 79 (215) T ss_dssp TSCHHHHHHHHHHTTCSEEEECCCSCCHHHHH--HHHHHHHHHHHHTTCEEEEESCH T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCHHHHH--HHHHHHHHHHHHCCCEEEECCHH T ss_conf 27789999999987998999827999999999--99999998776219379953279 No 318 >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Probab=21.25 E-value=29 Score=12.80 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHCCCCCC-CC-CCCC-----CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH---HHHHHHHHHHHCC Q ss_conf 99999999998087888-87-8888-----9889999999999864886788670788248727---8999999997200 Q T0591 56 GAFDLFSAGVQSGGVQA-YT-EYRG-----DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG---ALFLAVAATVARG 125 (406) Q Consensus 56 ~~~~~~~~~~~~~~~~~-Y~-~~~G-----~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~---~l~~~~~~l~~pG 125 (406) +.++...+.+.+.+..+ |. -..| ..+=|..+.+...+..+-. --|+++.|+.. .+..+ +..-+-| T Consensus 37 ~~l~~~i~~li~~Gv~Gi~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~r----~~vi~g~~~~s~~~~i~~a-~~a~~~G 111 (304) T 3cpr_A 37 AAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDR----AKLIAGVGTNNTRTSVELA-EAAASAG 111 (304) T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTT----SEEEEECCCSCHHHHHHHH-HHHHHTT T ss_pred HHHHHHHHHHHHCCCCEEEECEECHHHHHCCHHHHHHHHHHHHHHHCCC----CCEEECCCCCHHHHHHHHH-HHHHHCC T ss_conf 9999999999977999899784420032489999999999999983688----7677426752199999999-9999749 Q ss_pred -HHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-----CCCEEEECCCCCCCCCCCCCHHH Q ss_conf -101013105513899999829969998604466677666778899999850-----25403421566643233443789 Q T0591 126 -DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-----AGARVFLFSNPNNPAGVVYSAEE 199 (406) Q Consensus 126 -d~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-----~~~k~i~l~~P~NPTG~~~s~~~ 199 (406) |.|++..|+|.. ++-+++.+.++ .....++.++|. ++|..++.+. T Consensus 112 ad~i~v~pP~~~~----------------------------~~~~~i~~~f~~v~~~~~~pi~iyn~P~-~~g~~l~~~~ 162 (304) T 3cpr_A 112 ADGLLVVTPYYSK----------------------------PSQEGLLAHFGAIAAATEVPICLYDIPG-RSGIPIESDT 162 (304) T ss_dssp CSEEEEECCCSSC----------------------------CCHHHHHHHHHHHHHHCCSCEEEEECHH-HHSSCCCHHH T ss_pred CCEEEECCCCCCC----------------------------CCHHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCHHH T ss_conf 8999977875789----------------------------8999999999999866389813203764-3488888999 Q ss_pred HHHHHHHHHHCCCEEEECCCC Q ss_conf 999999986378757841750 Q T0591 200 IGQIAALAARYGATVIADQLY 220 (406) Q Consensus 200 l~~i~~~a~~~~~~ii~De~Y 220 (406) ++++.+ ..++.-+-|... T Consensus 163 ~~~L~~---~~~v~~iK~~~~ 180 (304) T 3cpr_A 163 MRRLSE---LPTILAVXDAKG 180 (304) T ss_dssp HHHHTT---STTEEEEEECSC T ss_pred HHHHHC---CCCEEEECCCCC T ss_conf 999853---898666136887 No 319 >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica hm-1} PDB: 3bm5_A* Probab=21.03 E-value=29 Score=12.77 Aligned_cols=79 Identities=10% Similarity=0.054 Sum_probs=42.9 Q ss_pred CCCCCHHHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEE Q ss_conf 88889889999999999-864886788670788248727899999999-7200101013105513899999829969998 Q T0591 75 EYRGDLGIRDLLAPRLA-AFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPV 152 (406) Q Consensus 75 ~~~G~~~Lr~aia~~~~-~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v 152 (406) .+.|.-..|-+...-.. ...|. ..+...|+..++++.|+.++..+- .+-.-.|.++.-.=..-...++.+|++++.+ T Consensus 52 nptGSfKdRga~~~i~~a~~~g~-~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~ 130 (343) T 2pqm_A 52 NPMSSVKDRVGFNIVYQAIKDGR-LKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILT 130 (343) T ss_dssp STTSBTHHHHHHHHHHHHHHHTS-SCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC T ss_conf 97677699999999999997187-68998899935774699999999985888746687034066764200257532134 Q ss_pred EE Q ss_conf 60 Q T0591 153 QL 154 (406) Q Consensus 153 ~~ 154 (406) +- T Consensus 131 ~~ 132 (343) T 2pqm_A 131 EG 132 (343) T ss_dssp CG T ss_pred CC T ss_conf 57 No 320 >1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Probab=20.95 E-value=29 Score=12.76 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=7.0 Q ss_pred CCCCCCCHHHHHHHH Q ss_conf 323344378999999 Q T0591 190 PAGVVYSAEEIGQIA 204 (406) Q Consensus 190 PTG~~~s~~~l~~i~ 204 (406) +.|..+|-+++.+.+ T Consensus 73 e~Gk~~sS~~fA~~l 87 (163) T 1o6d_A 73 KRGEEVSSEEFADFL 87 (163) T ss_dssp EEEEECCHHHHHHHH T ss_pred CCCCCCCHHHHHHHH T ss_conf 787877829999999 No 321 >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Probab=20.85 E-value=29 Score=12.74 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=50.7 Q ss_pred CCCHHHHHHHHH--HHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEE Q ss_conf 889889999999--999864886788670788248727899999999-72001010131055138999998299699986 Q T0591 77 RGDLGIRDLLAP--RLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQ 153 (406) Q Consensus 77 ~G~~~Lr~aia~--~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~ 153 (406) .|.-..|-+... ... +.|. ..|+..++++.++.++..+- .+-.-.|.++.-....-...++.+|++++.++ T Consensus 73 tGSfK~Rga~~~i~~a~-~~g~-----~~vv~aSsGN~g~a~A~aa~~~Gi~~~Iv~p~~~~~~k~~~l~~~GA~Vi~~~ 146 (372) T 1p5j_A 73 SGSFKIRGIGHFCKRWA-KQGC-----AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVG 146 (372) T ss_dssp GGBTTHHHHHHHHHHHH-HTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECC T ss_pred CCCHHHHHHHHHHHHHH-HCCC-----CEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHEECCCCCCEEEEEEC T ss_conf 77829999999999999-7699-----87999687789999999999859983420268884453112345742899831 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 04466677666778899999850254034215666432 Q T0591 154 LDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPA 191 (406) Q Consensus 154 ~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPT 191 (406) -+.. -..+...+...++...+++...+||. T Consensus 147 ~~~~--------~a~~~~~~la~~~~~~~~~~~~~~~~ 176 (372) T 1p5j_A 147 ELLD--------EAFELAKALAKNNPGWVYIPPFDDPL 176 (372) T ss_dssp SCHH--------HHHHHHHHHHHHSTTEEECCSSCCHH T ss_pred CCCC--------HHHHHHHHHHHHCCCEEECCCCCCCC T ss_conf 2210--------46778899986268705325667621 No 322 >3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* Probab=20.63 E-value=30 Score=12.71 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=49.6 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC- Q ss_conf 078824872789-9999999720010101310551---38999998299699986044666776667788999998502- Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYF---ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA- 177 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~---~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~- 177 (406) .++|| |++.+| ..+...|...|-.|++.+=.=. .....++..|.++..+.+|.. |.+++++.+.. T Consensus 36 valVT-Gas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvt---------~~~~v~~~~~~~ 105 (291) T 3cxt_A 36 IALVT-GASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCDVT---------DEDGIQAMVAQI 105 (291) T ss_dssp EEEEE-TCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTT---------CHHHHHHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECC---------CHHHHHHHHHHH T ss_conf 79992-87868999999999987998999979999999999999854995799980179---------999999999999 Q ss_pred -----CCEEEECCCC-CCCCC--CCCCHHHHHHHHHH Q ss_conf -----5403421566-64323--34437899999999 Q T0591 178 -----GARVFLFSNP-NNPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 178 -----~~k~i~l~~P-~NPTG--~~~s~~~l~~i~~~ 206 (406) +.. ++++|. .++.+ .-++.++++++.++ T Consensus 106 ~~~~G~iD-ilVnnAG~~~~~~~~~~~~e~~~~~~~v 141 (291) T 3cxt_A 106 ESEVGIID-ILVNNAGIIRRVPMIEMTAAQFRQVIDI 141 (291) T ss_dssp HHHTCCCC-EEEECCCCCCCCCGGGSCHHHHHHHHHH T ss_pred HHHCCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHH T ss_conf 99739986-9998998767777444569999998751 No 323 >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A Probab=20.62 E-value=30 Score=12.71 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=21.0 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 0342156664323344378999999998637875784175 Q T0591 180 RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQL 219 (406) Q Consensus 180 k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~ 219 (406) .+++.++|. .||..++.+.+.++. +..++.-+-|.. T Consensus 140 pi~iYn~P~-~~g~~~~~e~~~~l~---~~pnvvgiK~~~ 175 (301) T 1xky_A 140 PVMLYNVPG-RSIVQISVDTVVRLS---EIENIVAIKDAG 175 (301) T ss_dssp CEEEEECHH-HHSSCCCHHHHHHHH---TSTTEEEEEECS T ss_pred CEEEEECCC-CCCCCCCHHHHHHHC---CCCCEEEEECCC T ss_conf 789996787-657765988865322---489989984143 No 324 >2i5i_A UPF0249 protein EF_3048; hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} SCOP: c.6.2.8 Probab=20.18 E-value=30 Score=12.65 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=31.5 Q ss_pred CCCHHHHHHHHCCCCEEEE--CCCCCCCCCC----CCCHHHHHHHHHHHHHCCCEEE Q ss_conf 7788999998502540342--1566643233----4437899999999863787578 Q T0591 165 GLDLTGLEEAFKAGARVFL--FSNPNNPAGV----VYSAEEIGQIAALAARYGATVI 215 (406) Q Consensus 165 ~~d~~~l~~~~~~~~k~i~--l~~P~NPTG~----~~s~~~l~~i~~~a~~~~~~ii 215 (406) .++.+++++.+..+...+. --.|.-=.|. .+++...+.+.++++++++.+. T Consensus 100 ~~~~~~v~~El~AQi~~f~~~g~~P~hiDgH~hvh~~~p~i~~~~~~la~~~~ip~r 156 (263) T 2i5i_A 100 KVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGKNKKLLGVALALARKYQLPLR 156 (263) T ss_dssp TCCHHHHHHHHHHHHHHHGGGSSCCSCEEEGGGGGGSSHHHHHHHHHHHHHHTCCBC T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCEE T ss_conf 589999999999999999982899874525452003787899999999999699987 No 325 >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Probab=20.10 E-value=30 Score=12.64 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=48.2 Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCHHHHHHHCCCHHHHHHHH--------HHCCEEEEEEECCCCCCCCCCCCCHHHHHH Q ss_conf 078824872789-99999997200101013105513899999--------829969998604466677666778899999 Q T0591 103 GLIITPGTQGAL-FLAVAATVARGDKVAIVQPDYFANRKLVE--------FFEGEMVPVQLDYVSADETRAGLDLTGLEE 173 (406) Q Consensus 103 ~I~it~G~~~~l-~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~--------~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~ 173 (406) -++|| |++.+| ..+...|...|-.|++.+-.-........ ..+.++..+.+|.. |.+++++ T Consensus 20 valVT-Ggs~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs---------~~~~v~~ 89 (303) T 1yxm_A 20 VAIVT-GGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR---------NEEEVNN 89 (303) T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT---------CHHHHHH T ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC---------CHHHHHH T ss_conf 89993-8887899999999998799899997988999999999985303246965999976689---------9999999 Q ss_pred HHCC------CCEEEECCCCC-CCCC--CCCCHHHHHHHHHH Q ss_conf 8502------54034215666-4323--34437899999999 Q T0591 174 AFKA------GARVFLFSNPN-NPAG--VVYSAEEIGQIAAL 206 (406) Q Consensus 174 ~~~~------~~k~i~l~~P~-NPTG--~~~s~~~l~~i~~~ 206 (406) .++. +.. ++++|-. ++.+ .-++.++++++.++ T Consensus 90 ~v~~~~~~~G~iD-iLVnnAg~~~~~~~~~~~~~~~~~~~~v 130 (303) T 1yxm_A 90 LVKSTLDTFGKIN-FLVNNGGGQFLSPAEHISSKGWHAVLET 130 (303) T ss_dssp HHHHHHHHHSCCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCE-EEEECCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999829953-9995264555673665215789998753 No 326 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Probab=20.05 E-value=31 Score=12.63 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=18.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHH Q ss_conf 7078824872789999999972001010131055138999 Q T0591 102 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 141 (406) Q Consensus 102 ~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~ 141 (406) |-|++.+-...=...+ ...+..|-.|+|+-|.=.....+ T Consensus 69 D~V~i~tp~~~H~~~~-~~al~~gk~v~~EKP~a~~~~ea 107 (352) T 3kux_A 69 DLIVIPTPNDTHFPLA-QSALAAGKHVVVDKPFTVTLSQA 107 (352) T ss_dssp CEEEECSCTTTHHHHH-HHHHHTTCEEEECSSCCSCHHHH T ss_pred CEEEECCCHHHHHHHH-HHHHHCCCCEECCCCCCCCCCCC T ss_conf 8899928837878888-89987398760269841123321 Done!