Query T0591 YP_354942.1, , 406 residues
Match_columns 406
No_of_seqs 188 out of 8756
Neff 8.6
Searched_HMMs 11830
Date Mon Jul 5 09:21:53 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0591.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0591.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00155 Aminotran_1_2: Aminot 100.0 0 0 424.4 26.3 347 39-397 2-363 (363)
2 PF04864 Alliinase_C: Allinase 99.9 4.2E-26 3.6E-30 192.6 15.7 288 79-401 45-362 (362)
3 PF00266 Aminotran_5: Aminotra 99.9 1.6E-18 1.3E-22 141.3 28.2 314 53-392 11-370 (371)
4 PF01053 Cys_Met_Meta_PP: Cys/ 99.8 8.9E-16 7.6E-20 122.7 28.0 284 71-394 47-381 (386)
5 PF01041 DegT_DnrJ_EryC1: DegT 99.8 1.6E-16 1.4E-20 127.7 21.9 278 54-369 4-310 (363)
6 PF01276 OKR_DC_1: Orn/Lys/Arg 99.7 1.6E-15 1.3E-19 121.0 19.9 241 75-334 63-329 (417)
7 PF00464 SHMT: Serine hydroxym 99.6 4.8E-13 4.1E-17 104.2 19.7 335 41-401 23-399 (399)
8 PF01212 Beta_elim_lyase: Beta 99.6 2.5E-15 2.1E-19 119.7 6.5 248 53-328 7-273 (290)
9 PF00202 Aminotran_3: Aminotra 99.3 1.8E-10 1.5E-14 86.8 17.6 247 39-299 17-292 (339)
10 PF06838 Alum_res: Aluminium r 99.3 2E-10 1.7E-14 86.4 15.1 175 83-276 56-247 (403)
11 PF02347 GDC-P: Glycine cleava 99.0 1.9E-08 1.6E-12 73.0 15.9 312 43-400 70-428 (429)
12 PF00282 Pyridoxal_deC: Pyrido 99.0 5.8E-08 4.9E-12 69.8 17.2 261 59-334 58-363 (373)
13 PF03841 SelA: L-seryl-tRNA se 98.7 8E-09 6.8E-13 75.6 4.4 253 54-325 19-296 (367)
14 PF05889 SLA_LP_auto_ag: Solub 98.4 5.7E-05 4.8E-09 49.5 18.0 295 88-402 64-389 (389)
15 PF04321 RmlD_sub_bind: RmlD s 80.1 1 8.8E-05 20.7 4.4 107 165-276 37-165 (286)
16 PF00728 Glyco_hydro_20: Glyco 76.0 1.7 0.00015 19.2 5.2 22 194-215 68-89 (350)
17 PF04392 ABC_sub_bind: ABC tra 69.8 1.5 0.00013 19.5 3.1 121 73-216 38-165 (294)
18 PF00128 Alpha-amylase: Alpha 62.8 2.7 0.00023 17.9 3.3 29 196-224 50-78 (316)
19 PF05913 DUF871: Bacterial pro 60.4 3.1 0.00026 17.5 3.2 20 195-214 153-172 (357)
20 PF04002 DUF2466: Protein of u 60.0 3.6 0.00031 17.0 3.6 49 165-215 50-104 (123)
21 PF05114 DUF692: Protein of un 59.4 3.7 0.00032 16.9 4.4 63 182-248 135-202 (274)
22 PF03786 UxuA: D-mannonate deh 56.5 2.4 0.0002 18.3 2.0 35 178-212 25-59 (351)
23 PF04794 YdjC: YdjC-like prote 45.9 6 0.00051 15.5 2.8 51 165-215 98-153 (261)
24 PF11977 RNase_Zc3h12a: Zc3h12 41.9 6.9 0.00059 15.1 5.7 91 110-225 23-116 (155)
25 PF04016 DUF364: Domain of unk 40.5 7.3 0.00061 15.0 5.3 86 122-215 109-194 (232)
26 PF10609 ParA: ParA/MinD ATPas 37.2 8.2 0.00069 14.6 2.8 34 177-215 24-57 (81)
27 PF00150 Cellulase: Cellulase 36.9 8.2 0.0007 14.6 4.7 11 144-154 37-47 (287)
28 PF02679 ComA: (2R)-phospho-3- 33.0 7.9 0.00066 14.7 1.7 50 81-153 55-104 (244)
29 PF03460 NIR_SIR_ferr: Nitrite 32.1 9.7 0.00082 14.1 2.0 21 190-211 17-37 (69)
30 PF08886 GshA: Glutamate-cyste 30.5 10 0.00088 13.9 6.4 73 143-216 33-113 (404)
31 PF07745 Glyco_hydro_53: Glyco 29.8 11 0.0009 13.8 4.0 37 188-224 47-84 (332)
32 PF02662 FlpD: Methyl-viologen 29.0 11 0.00093 13.7 5.2 56 147-210 29-89 (124)
33 PF00448 SRP54: SRP54-type pro 28.7 11 0.00094 13.7 2.1 43 177-220 82-125 (196)
34 PF01791 DeoC: DeoC/LacD famil 25.3 13 0.0011 13.3 3.7 52 168-220 79-133 (236)
35 PF08543 Phos_pyr_kin: Phospho 25.1 13 0.0011 13.3 2.9 12 79-90 71-82 (246)
36 PF12138 Spherulin4: Spherulat 22.3 15 0.0012 12.9 6.1 48 168-215 18-71 (251)
37 PF01408 GFO_IDH_MocA: Oxidore 20.8 16 0.0013 12.7 7.4 21 196-216 98-118 (120)
No 1
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 1u08_A 1v2f_A 1v2d_A 1v2e_B 2r5c_A 2r5e_B 1yiz_B 1yiy_A 3fvx_B 3fvs_B ....
Probab=100.00 E-value=0 Score=424.40 Aligned_cols=347 Identities=28% Similarity=0.437 Sum_probs=301.6
Q ss_pred CCEEECCCCCCCCC---CCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH
Q ss_conf 83341567867887---88899999999-998087888878888988999999999986488678867078824872789
Q T0591 39 RPVDFSHGDVDAHE---PTPGAFDLFSA-GVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 114 (406)
Q Consensus 39 ~~i~ls~G~pd~~~---p~~~~~~~~~~-~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l 114 (406)
..|||+.|+|+... +.|.+.+++.+ ........+|++..|.++||+++++|+.+.+|++.+++.+|++|+|+++++
T Consensus 2 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLSSGDPLFDSQNPPLPEALKALLDGAADGSSILQYGPPQGYPELREALADFLGRRRGIPLDPDSNILITSGAQAAL 81 (363)
T ss_dssp EEEBESSSSTSSTTTHHHHHHHHHHHHHHHHHHGGGTSS--TTHHHHHHHHHHHHHHHHHHHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEE
T ss_conf 76998598799744444659999999876554444254899421199999999978760597657762289616762233
Q ss_pred HHHHHHH-HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC------CCEEEECCCC
Q ss_conf 9999999-72001010131055138999998299699986044666776667788999998502------5403421566
Q T0591 115 FLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNP 187 (406)
Q Consensus 115 ~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P 187 (406)
..++.++ +++||.|++++|+|+.|...++..|.++++++++.. ++|++|++++++.+++ ++++++++||
T Consensus 82 ~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~----~~~~~d~~~l~~~l~~~~~~~~~~~~i~i~~p 157 (363)
T PF00155_consen 82 FLLFRLLKLDPGDVVLVPEPTYPSYIRIARLAGAEVVPVPLDSE----DDFGLDLDALEAALEEYRKRSPRPKAILIPNP 157 (363)
T ss_dssp HHHHHHHHHTTTSEEEEEESSTTHHHHHHHHTTTEEEEEEBEET----TTTEETHHHHHHHHHTHHTTTETEEEEEEESS
T ss_pred EHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 00021011356444555577554223101036846999950455----55576612133333222223455413521465
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH
Q ss_conf 64323344378999999998637875784175023556888765223321026786899850400104631121143325
Q T0591 188 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS 267 (406)
Q Consensus 188 ~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~ 267 (406)
|||||.+++.+++++|+++|++||++||+||+|+++.+++..+.+..... ....++|+++||||.|++||+|+||++++
T Consensus 158 ~NPtG~~~s~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlR~G~v~~~ 236 (363)
T PF00155_consen 158 HNPTGSVLSAEELRELAELARKYNVLLIEDEAYSDLVYGDPDFYSILSLL-DEGPNVIVLGSFSKALGLPGLRVGFVVAP 236 (363)
T ss_dssp -STT-B---HHHHHHHHHHHHHTTSEEEEEETTTTGSSSSSHTHHHGGGH-HTTTTEEEEEESTTTTTBGGGT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCCCHHC
T ss_conf 45631455477655588763022023430441355543897777542235-78841899413322333343466640013
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECC
Q ss_conf 8999999987520367612457999999985652---5899999999999999999997279945535887307877668
Q T0591 268 RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP 344 (406)
Q Consensus 268 ~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~ 344 (406)
+++++.++.++..... +++.|.++..++.+.. .++.++++.++++++.+.+.|++. ++.+..+++|+|+|+++.
T Consensus 237 ~~~~~~l~~~~~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~ 313 (363)
T PF00155_consen 237 PELIAALRKLSRPWII--SSPLQQAAAAALADPQFYDRHLRELRRRLRERRDRLREALEEL-GISVLPPPGGFFLWLDLD 313 (363)
T ss_dssp HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSEEEHHSSSEEEEEEET
T ss_pred HHHHHHHHHHCCCCCC--CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCEEEEEECC
T ss_conf 4666544300012232--0245789987532543222110025678878999999877620-624303688528999656
Q ss_pred CCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE-CCCHHHHHHHHHHH
Q ss_conf 878898999999998689189616102679998589985-09979999999999
Q T0591 345 KLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF-SQDHEAAVAAARRI 397 (406)
Q Consensus 345 ~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~-~~~~e~l~~al~rl 397 (406)
.. ++.+|++.|++++||.++||+.|+. ++|+|+++ ..++++++++++||
T Consensus 314 ~~--~~~~~~~~L~~~~gi~v~~g~~f~~--~~~iRi~~a~~~~~~~~~~~~~l 363 (363)
T PF00155_consen 314 PL--DAMELAQKLLEEHGILVVPGSYFGV--PGFIRISLAGLTPEEIEEAVERL 363 (363)
T ss_dssp HH--HHHHHHHHHHHHHTEEEBEGGTTSS--TTEEEEESSSSHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHCCEEEEECCCCCC--CCEEEEEEEECCHHHHHHHHCCC
T ss_conf 51--6999999999849999983777899--99899996109999999983469
No 2
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system .; GO: 0016846 carbon-sulfur lyase activity; PDB: 2hor_A 2hox_C 1lk9_A 3bwo_E 3bwn_B.
Probab=99.94 E-value=4.2e-26 Score=192.58 Aligned_cols=288 Identities=18% Similarity=0.219 Sum_probs=207.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC--C----HHHHHHHCCCHHHHHHHHHHCCEEEEE
Q ss_conf 9889999999999864886788670788248727899999999720--0----101013105513899999829969998
Q T0591 79 DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVAR--G----DKVAIVQPDYFANRKLVEFFEGEMVPV 152 (406)
Q Consensus 79 ~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~p--G----d~Vl~~~P~y~~~~~~~~~~g~~~v~v 152 (406)
.++|-+.|. .|++.-|-.++-...|++++|+||.++.++.+|..+ . -.|+...|+|+.|..+...+..
T Consensus 45 s~eLe~~Ir-~LH~~VGNAvtdgr~IV~GtGsTQL~~AavyALSp~~~~~~~p~~VVa~aPyY~~y~~qT~~~~s----- 118 (362)
T PF04864_consen 45 SPELERHIR-RLHRVVGNAVTDGRYIVFGTGSTQLLNAAVYALSPPATNSSPPASVVAAAPYYSVYKEQTDFFDS----- 118 (362)
T ss_dssp -HHHHHHHH-HHHHH---B--TTSEEE-----HHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-B-----
T ss_pred CHHHHHHHH-HHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCC-----
T ss_conf 699999999-99987345201673799927799999999997088878889963157448867432888876146-----
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 60446667766677889999985025403421566643233443789999999986378757841750235568887652
Q T0591 153 QLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH 232 (406)
Q Consensus 153 ~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~ 232 (406)
..-.|.-|.......-+..+-+-++|+||||.|.. ++.++ +..+..+|.|-+|.+ +.+++
T Consensus 119 -------~~y~w~Gda~~~~~~~~~~~~IElVTSPNNPDG~l-----r~aV~---~g~~~k~I~D~AYYW-----PhyTp 178 (362)
T PF04864_consen 119 -------GLYKWAGDASTFVNSDTPGPYIELVTSPNNPDGQL-----REAVL---NGSSGKAIHDLAYYW-----PHYTP 178 (362)
T ss_dssp ---------EEE---GGGGTT-S-GGGEEEEEESS-S-------------S-----TTEEEEEEE-TT-S-----TTTS-
T ss_pred -------CCCEECCCHHHHCCCCCCCCEEEEEECCCCCCCCH-----HHHHC---CCCCCCEEEEEEEEC-----CCCCC
T ss_conf -------68334257899657899887389983899985102-----14540---699753143200005-----55566
Q ss_pred HHHHHCCCCCCEEEEEECCHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---------CH
Q ss_conf 23321026786899850400104631121143-325899999998752036761245799999998565---------25
Q T0591 233 LRAEAAVDAENVVTIMGPSKTESLSGYRLGVA-FGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---------PG 302 (406)
Q Consensus 233 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~-~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---------~~ 302 (406)
+...+..| |.++|+||.-|.+|-|+||. +-++++.++|..+....+.++|.-+|.-++.+|..- ..
T Consensus 179 I~~~aD~D----iMLFTlSK~TGHAGsR~GWAlVKD~~Va~km~~y~~lnt~GvS~dsQLRa~kiLk~v~~~~~~~~g~~ 254 (362)
T PF04864_consen 179 ITAPADHD----IMLFTLSKLTGHAGSRFGWALVKDEEVAKKMLKYMELNTIGVSRDSQLRALKILKVVLDGYKTNPGTE 254 (362)
T ss_dssp --S-B--S----EEE--HHHH----------EEES-HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHCCHHSTTT
T ss_pred CCCCCCCC----EEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 57766675----58999731357664511046762399999999999761555768899999999999985116788624
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEE--------------ECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 8999999999999999999972799455--------------35887307877668878898999999998689189616
Q T0591 303 WMEDRIARHQAIRDELLHVLRGCEGVFA--------------RTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPG 368 (406)
Q Consensus 303 ~~~~~~~~~~~~r~~l~~~L~~~~g~~~--------------~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG 368 (406)
..+--++.+++|...|.+.+..-..++. ..|+. -|.|+++...... -|...++++||....|
T Consensus 255 ~F~fg~~~m~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psP-afaWlkCe~eed~---DC~~~L~~~~Iitr~G 330 (362)
T PF04864_consen 255 IFEFGYEVMRERWERLRAAVSNSDRFSLQEIPPQYCNFFGKVREPSP-AFAWLKCEWEEDE---DCYAVLREAKIITRSG 330 (362)
T ss_dssp TTT---HHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTEEEE----SEEEEEE-SCGGS---SHHHHHHTTTEEEB--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHCHHCCCCCCCCC-CEEEEECCCCCCH---HHHHHHHHCCCCCCCC
T ss_conf 78999999999999999999637847558788221200053148998-7688863864410---5999998688105788
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 102679998589985099799999999999999
Q T0591 369 TEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 401 (406)
Q Consensus 369 ~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~ 401 (406)
..||.+ +.|+|+|+...+++++.-++||.+++
T Consensus 331 ~~Fga~-~ryvRlSll~~~d~Fd~l~~rL~~lv 362 (362)
T PF04864_consen 331 VLFGAD-SRYVRLSLLKRQDDFDQLLERLSKLV 362 (362)
T ss_dssp ----S--TTEEEEESSS-HHHHHHHHHHHHCCH
T ss_pred CCCCCC-CCEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 744888-75699871576756999999998449
No 3
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulphurases.; GO: 0008483 transaminase activity, 0008152 metabolic process; PDB: 2hzp_A 3e9k_A 1qz9_A 1n2t_B 1elu_A 1n31_A 1elq_B 2bkw_A 2yrr_B 2yri_A ....
Probab=99.86 E-value=1.6e-18 Score=141.30 Aligned_cols=314 Identities=22% Similarity=0.243 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHHCCCCCC----CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH---HHCC
Q ss_conf 88899999999998087888----8788889889999999999864886788670788248727899999999---7200
Q T0591 53 PTPGAFDLFSAGVQSGGVQA----YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT---VARG 125 (406)
Q Consensus 53 p~~~~~~~~~~~~~~~~~~~----Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l---~~pG 125 (406)
+++.+++++.+.+....... +....-..++.+.+.+.+.+..|.+. .++|++|+|+++++..++..+ +.+|
T Consensus 11 ~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~la~ll~~~~--~~~i~f~~~~t~~~~~~~~~l~~~~~~g 88 (371)
T PF00266_consen 11 LPPSVLEAISEYLEEFFGNPHSSIHHRSQEFQEIVEEAREKLARLLGAPP--PEEIAFTSNTTEALNAVLRSLRRNLKPG 88 (371)
T ss_dssp -BHHHHHHHHHHHHSTTTCTTTCSCTTSHHHHHHHHHHHHHHHHHHTSSG--TGEEEEESSHHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 97999999999998762487665675339999999999999999719985--3332322466554323300011344554
Q ss_pred HHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 10101310551389999----98299699986044666776667788999998502540342156664323344378999
Q T0591 126 DKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIG 201 (406)
Q Consensus 126 d~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~ 201 (406)
|+|++..-.|++....+ +..|.++..++.+. +..+|+++++++++++++++.++.-+|-||..++ ++
T Consensus 89 ~~il~~~~e~~s~~~~~~~~~~~~g~~v~~~~~~~------~~~~~~~~l~~~i~~~~~lv~~s~~~~~tG~~~p---i~ 159 (371)
T PF00266_consen 89 DEILVTNNEHPSNRLPWEELAERKGAEVREIPVDP------GGEVDLEELEEAIDPRTRLVSISHVETSTGVRNP---IE 159 (371)
T ss_dssp SEEEEECTSHHHHHHHHHHHHHHCCEEEEEEEBGT------TSSBSHHHHHHHHHTTEEEEEEESBETTTTEBSS---HH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC------CCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEC---HH
T ss_conf 21022233562046799875430530269941333------2101146677763468626986226777758830---58
Q ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999863787578417502355688876522332102678689985040010463112114332589999999875203
Q T0591 202 QIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIV 281 (406)
Q Consensus 202 ~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~ 281 (406)
+|.++|+++|+++++|-+++. |..+..+... ..+ +++.|.-|.+|.+| +|+++..++.++.+.......
T Consensus 160 ~i~~~~~~~g~~~~vD~~~~~----g~~~id~~~~---~~D--~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~~~~~~~ 228 (371)
T PF00266_consen 160 EIAALAREYGALVVVDAAQSA----GAIPIDLDEL---GVD--FLVFSSHKLFGPPG--LGFLYVSPRAIEKLEPPFPGW 228 (371)
T ss_dssp HHHHHHHHTTSEEEEE-TTTT----TSS---TTTT---TES--EEEEESTSTTS------EEEEEEHHHHHHHHSSTCSS
T ss_pred HHHHHHHCCCCEEEEECCCCC----CCCCCCCCCC---CCC--EEEECCCCCCCCCC--HHHHHCCHHHHHCCCCCCCCC
T ss_conf 865666206976998313566----6555555533---224--68755877778973--778770598772248745788
Q ss_pred --------------------CCCH-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-----C
Q ss_conf --------------------6761-245799999998565-258999999999999999999972799455358-----8
Q T0591 282 --------------------SLRA-AGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-----Q 334 (406)
Q Consensus 282 --------------------~~~~-~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-----~ 334 (406)
..++ +.+...++...++.. +.-++...++.++..+.+.+.|.+++++.+..| .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~f~~GT~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 308 (371)
T PF00266_consen 229 GYVDDPSLQEYGFKDDAQRFEPGTPNVPSIYALGEALKLLQEGGLEAIRERIRELAQYLREALEEIGGVRLLGPDDEPRS 308 (371)
T ss_dssp CTTTHTHHHHHHHHHTTGGSSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCSGGGGG
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 75556435442023564222355520578999999999987630478999999999999999986786699435334455
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCC------CCCCCEEEEEEC--CCHHHHHH
Q ss_conf 73078776688788989999999986891896161026------799985899850--99799999
Q T0591 335 AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS------PHTADSVRLNFS--QDHEAAVA 392 (406)
Q Consensus 335 gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg------~~~~~~iRis~~--~~~e~l~~ 392 (406)
++. +-+.++ +.+..++...|.++ ||.+..|..+. ....+.+|+|+. +++++++.
T Consensus 309 ~~i-v~~~~~--~~~~~~~~~~L~~~-gI~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dvd~ 370 (371)
T PF00266_consen 309 PSI-VSFNLP--GIDAEDLVKALKER-GIIISAGSACAGPSLRLLGLGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp TTS-EEEEET--TSSHHHHHHHHHHH-HEBEBETTTTCHHHHHHTTTTTEEEEE--TTSSHHHHHH
T ss_pred CCE-EEEEEC--CCCHHHHHHHHHCC-CCEEECCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 654-899964--56899999998528-981754664042788870799889985888899999953
No 4
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown , to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 amino acid metabolic process; PDB: 1pff_B 1e5f_A 1e5e_A 1gc0_B 1gc2_C 1ukj_C 1pg8_D 2o7c_B 1y4i_A 2rfv_A ....
Probab=99.79 E-value=8.9e-16 Score=122.69 Aligned_cols=284 Identities=22% Similarity=0.254 Sum_probs=180.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC
Q ss_conf 88878888988999999999986488678867078824872789999999972001010131055138999998----29
Q T0591 71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE 146 (406)
Q Consensus 71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g 146 (406)
+.|+- .|.|.. +++.+.+....|. +..++++.+..|+..++.+++.+||+|+++...|......++. .|
T Consensus 47 ~~Y~R-~gnPt~-~~le~~la~LEg~-----~~a~~~sSGmaAi~~~~~~ll~~Gd~vv~~~~~Yg~t~~~l~~~~~~~g 119 (386)
T PF01053_consen 47 YIYSR-YGNPTV-RALEERLAALEGG-----EAALLFSSGMAAITAALLALLRPGDHVVASDDLYGGTRRLLREFLPRFG 119 (386)
T ss_dssp -SBTT-TB-HHH-HHHHHHHHHHHT------SEEE-B----HHHHHHHHHHS----EEEEESSS-HHHHHHHHHCHHH--
T ss_pred CCEEC-CCCCHH-HHHHHHHHHHHCC-----CCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCC
T ss_conf 72408-999315-7999999998576-----5348863608999999997478999799957754317676563366788
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCCCCC
Q ss_conf 96999860446667766677889999985025403421566643233443789999999986378-75784175023556
Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLRY 225 (406)
Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~-~~ii~De~Y~~l~~ 225 (406)
.++..+. .-|+++++++++++|++|++-+|.||+-.+. ++++|+++|+++| +++++|+.+.--.+
T Consensus 120 v~v~~~d-----------~~d~~~~~~~i~~~t~~v~~EspsNP~l~v~---Di~~i~~~a~~~g~~~vvVDnT~atp~~ 185 (386)
T PF01053_consen 120 VEVTFVD-----------PSDLDALEAAIDPNTKLVFLESPSNPTLEVP---DIEAIAEIAHEHGDILVVVDNTFATPVL 185 (386)
T ss_dssp -EEEEES-----------TTSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHHST-EEEEEGTTTHTTT
T ss_pred EEEEEEC-----------CCCHHHHHHHHCCCCCEEEEECCCCCCCCCC---CHHHHHHHHHHHCCEEEEEECCCCCCCE
T ss_conf 5999968-----------8688999998535775899987887775246---7899999999859749998064227605
Q ss_pred CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 888765223321026786899850400104631-12114332--589999999875203676124579999999856525
Q T0591 226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFG--SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG 302 (406)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~--~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~ 302 (406)
..++. ..--|+++|.||.++-.| .=.|.++. +.++.+++...........+... +..++ .+-+
T Consensus 186 ----~~Pl~------~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~~G~~l~p~d---a~ll~-rgl~ 251 (386)
T PF01053_consen 186 ----QRPLE------LGADIVVHSATKYLSGHSDVMGGAVVTNGSEELIERLRFLRRLLGATLSPFD---AWLLL-RGLR 251 (386)
T ss_dssp ----S-GGG----------EEEEETTTTT----S--E-EEEESHHHHHHHHHHHHHHH---B--HHH---HHHHH----T
T ss_pred ----ECCCC------CCCCEEEEECCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHH---HHHHH-HCCC
T ss_conf ----03665------6782899847677238877435999988717889887777875388878799---99998-0589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCE-EECCC-----------------CCEEEEEECCCCCCCHHHHHHHHHHHCCEE
Q ss_conf 899999999999999999997279945-53588-----------------730787766887889899999999868918
Q T0591 303 WMEDRIARHQAIRDELLHVLRGCEGVF-ARTPQ-----------------AGSYLFPRLPKLAVAPAEFVKILRLQAGVV 364 (406)
Q Consensus 303 ~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~-----------------gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~ 364 (406)
-+.-+.++..++...+.+.|.+.+.+. +..|. ||+ +.+.+.. ..+-+.++++.-.+.
T Consensus 252 TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~-~sf~l~~----~~~~~~~f~~~l~l~ 326 (386)
T PF01053_consen 252 TLALRMERHNENALALAEFLEAHPKVKRVNYPGLPSHPQHELAKRQMTGGGGM-LSFELKG----GEEAARRFIDALKLF 326 (386)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSGG--E-EEEEESS----HHHHHHHHHHC-SSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCE-EEEEECC----CHHHHHHHHHHCCCE
T ss_conf 89999999999999999998517998889974778871588886023688833-8999288----479999999843540
Q ss_pred -------------EEECCC----CC-------CCCCCEEEEEECC-CHHHHHHHH
Q ss_conf -------------961610----26-------7999858998509-979999999
Q T0591 365 -------------VTPGTE----FS-------PHTADSVRLNFSQ-DHEAAVAAA 394 (406)
Q Consensus 365 -------------v~pG~~----Fg-------~~~~~~iRis~~~-~~e~l~~al 394 (406)
..|.+. +. .-.++.||+|++. +.|+|.+-+
T Consensus 327 ~~~~slGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~lvRlsvGlEd~~DLi~Dl 381 (386)
T PF01053_consen 327 KIAVSLGGVESLISHPASTTHRSMPEEERAAAGIPDGLVRLSVGLEDPEDLIADL 381 (386)
T ss_dssp EESS-----S-EEEETTTTTTTTSCHHHHHH----TTEEEEE-----HHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 5864678777455577523231299989975699999599994579999999999
No 5
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS . The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin .; PDB: 3gr9_D 3b8x_A 2gms_B 2gmu_B 2r0t_A 3bb8_B 3bcx_A 3dr7_C 3dr4_B 3bn1_C ....
Probab=99.77 E-value=1.6e-16 Score=127.69 Aligned_cols=278 Identities=19% Similarity=0.207 Sum_probs=183.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHH
Q ss_conf 88999999999980878888788889889999999999864886788670788248727899999999-72001010131
Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQ 132 (406)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~ 132 (406)
..+..+++.+.+.++....|++. ..++-+.+++| +|. ..++.++.+|.||.+++.++ +.|||+|++|.
T Consensus 4 ~~~~~~~v~~vl~sg~~~~~g~~--~~~fE~~~a~~----~g~-----~~av~~~sgt~AL~~al~al~~~~gdeVi~p~ 72 (363)
T PF01041_consen 4 TEEELEAVLEVLRSGWLTNYGPE--VREFEKEFAEY----FGV-----KYAVAVSSGTSALHLALRALGVGPGDEVIVPA 72 (363)
T ss_dssp HHHHHHHHHHHHHHTTCB----H--HHHHHHHHHHH----CTS-----SEEE-BSSCHHHHHHHHHH-S-BTT-EEEEES
T ss_pred CHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHH----HCC-----CEEEEECCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 89999999999980996269989--99999999998----497-----96999679999999999984178999899788
Q ss_pred CCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 05513899999829969998604466677666778899999850254034215666432334437899999999863787
Q T0591 133 PDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA 212 (406)
Q Consensus 133 P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~ 212 (406)
-+|......+...|++++.+.++ .+.+.+|++.++++++++||+|++++. -|... ++++|.++|++||+
T Consensus 73 ~t~~at~~ai~~~G~~pv~~Dvd-----~~t~~~d~~~~~~~i~~~t~aii~vh~---~G~~~---d~~~i~~~~~~~~i 141 (363)
T PF01041_consen 73 FTFPATASAILQAGAKPVFVDVD-----PDTLNIDPEALEKAITPKTKAIIPVHL---FGQPA---DMDEIREIARKHGI 141 (363)
T ss_dssp SS-THHHHHHHHTT-EEEEE-BE-----TTTSSB-HHHHHHHHHTTEEEEEEE--------------HHHHHHHHHHCT-
T ss_pred CCCHHHHHHHHHCCCEEEEEECC-----CCCCCCCHHHHHHHHHCCCEEEEEECC---CCCCC---CHHHHHHHHHHHCC
T ss_conf 65577799999829989998269-----898983999999762169879999888---67814---89999999999599
Q ss_pred EEEECCCCCCC-CCCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHCC------
Q ss_conf 57841750235-568887652233210267868998504--0010463112114332-5899999998752036------
Q T0591 213 TVIADQLYSRL-RYAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQAIVS------ 282 (406)
Q Consensus 213 ~ii~De~Y~~l-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~~------ 282 (406)
+||+|-+.+.- .|.|...-++ .+ +.++|| +|.+... --|.++. ++++.++++.++.+-.
T Consensus 142 ~vIEDaa~a~g~~~~g~~~G~~-------gd--~~~fSF~~~K~i~~g--eGG~v~t~d~~~~~~~~~lr~~G~~~~~~~ 210 (363)
T PF01041_consen 142 PVIEDAAQALGATYKGKKVGTF-------GD--AGVFSFHPTKNITTG--EGGAVVTNDEELAERARSLRNHGRSRDSFD 210 (363)
T ss_dssp EEEEE-TT----EETTEB-----------SS--BEE---STTSSS-S-------EEES-HHHHHHHHHHCBTCEETSSSS
T ss_pred EEEECCCCCCCCEECCEECCCC-------CC--EEEEECCCCCCCEEC--CCCCEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9987175765672599755688-------88--899968998766106--998065374999998657774587656665
Q ss_pred -----------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCE-EEE----EECCC
Q ss_conf -----------761245799999998565258999999999999999999972799455-3588730-787----76688
Q T0591 283 -----------LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA-RTPQAGS-YLF----PRLPK 345 (406)
Q Consensus 283 -----------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~gg~-~~w----~~~~~ 345 (406)
...+.+ |.+ -.+.+ -+.+.+..++.+++.+.+.+.|.+++++.. ..|.+.. ..| +.+++
T Consensus 211 ~~~~~~~~G~n~rm~~~-~AA--ig~~Q-L~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 286 (363)
T PF01041_consen 211 RYEHELPIGYNYRMSEL-QAA--IGLAQ-LKRLDEIIARRRENAERYREALADLPGLRPLPIPPGNSEHSYHRYPIRLPE 286 (363)
T ss_dssp TTB-S-S---B-B-BHH-HHH--HHHHH-HHCHHHHHHHHHHHHHHHHHHHTTGSSEEEEGCGTTTEEEEESSEEEEETT
T ss_pred CEEEEECCCCCCCCCHH-HHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf 23321058655676689-999--99999-999999999999999999998558999656777888765212799999545
Q ss_pred C-CCCHHHHHHHHHHHCCEEEEECC
Q ss_conf 7-88989999999986891896161
Q T0591 346 L-AVAPAEFVKILRLQAGVVVTPGT 369 (406)
Q Consensus 346 ~-~~~~~~~~~~Ll~~~gV~v~pG~ 369 (406)
. ..+..++.+.| .+.||-+.+..
T Consensus 287 ~~~~~Rd~l~~~L-~~~GI~t~~~y 310 (363)
T PF01041_consen 287 EALADRDELIEAL-RARGIETRVHY 310 (363)
T ss_dssp TCHHCHHHHHHHH-HHTTEB-BSST
T ss_pred CCHHHHHHHHHHH-HHCCCCEECCC
T ss_conf 3225799999999-98799634115
No 6
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates . One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 2vyc_G 1ord_A 1c4k_A.
Probab=99.71 E-value=1.6e-15 Score=121.03 Aligned_cols=241 Identities=18% Similarity=0.222 Sum_probs=149.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEE
Q ss_conf 88889889999999999864886788670788248727899999999720010101310551389999982996999860
Q T0591 75 EYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL 154 (406)
Q Consensus 75 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~ 154 (406)
...|...= .-+...+.||.+ .-.+++||+|.++..++++++.|||.|+++..++-+....+.+.|++++++..
T Consensus 63 ~p~G~I~e---aq~~aA~~fgad----~t~f~vnGsT~~n~a~i~a~~~~gd~vLv~RN~HKSv~~alil~ga~Pvyl~p 135 (417)
T PF01276_consen 63 DPEGIIKE---AQELAARAFGAD----RTYFLVNGSTGGNQAMIMALCRPGDKVLVDRNCHKSVYHALILSGAKPVYLYP 135 (417)
T ss_dssp TT---HHH---HHHHHHHHHT-S----EEEEE----HHHHHHHHHHH--TT-EEEEETT--HHHHHHTTT---EEEEE--
T ss_pred CCCCHHHH---HHHHHHHHCCCC----CEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEECC
T ss_conf 88719999---999999863998----37999578218999999984289998997076489999999987997899437
Q ss_pred CCCCCCCCCCCCCH-----HHHHHHHCC--CCEE---EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CC
Q ss_conf 44666776667788-----999998502--5403---4215666432334437899999999863787578417502-35
Q T0591 155 DYVSADETRAGLDL-----TGLEEAFKA--GARV---FLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RL 223 (406)
Q Consensus 155 ~~~~~~~~~~~~d~-----~~l~~~~~~--~~k~---i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l 223 (406)
. .....--.++++ +.++++++. ..|+ ++|+||+- -|.++. +++|+++|+++++.|++|||++ ++
T Consensus 136 ~-~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~ka~~~vvlt~pTY-~G~~~d---~~~i~~~~h~~~~~llvDEAhGah~ 210 (417)
T PF01276_consen 136 E-RNEYGIIGGIPPSEFTPESIEKALAEHPDAKAPRAVVLTSPTY-DGVCYD---LKEIADICHKYGIPLLVDEAHGAHF 210 (417)
T ss_dssp -------------GGGCSHHHHHHHHHHGCCCHCECEEEEESS------EE----HHHHHHHHTTTECEEEEE-TT---C
T ss_pred C-CCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC-CEEEEC---HHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 8-6678860477836437999999998486435831899977986-637408---9999999854599599978576765
Q ss_pred CCCCCCCCCHHHHHCC--CCCCEEEEEECCHHCCCCCCCCH-HHHH-------HHHHHHHHHHHHHHCCCCHHHHH---H
Q ss_conf 5688876522332102--67868998504001046311211-4332-------58999999987520367612457---9
Q T0591 224 RYAGASYTHLRAEAAV--DAENVVTIMGPSKTESLSGYRLG-VAFG-------SRAIIARMEKLQAIVSLRAAGYS---Q 290 (406)
Q Consensus 224 ~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~GlRiG-~~~~-------~~~~i~~l~~~~~~~~~~~~~~~---q 290 (406)
.|..-+.+.+ ...++ +...++++.|..|++ |++.=+ ++-. .+.+-+.+..++ +.++|.+. .
T Consensus 211 ~F~~lp~~a~-~~gaD~~~~~~~~vvqS~HKtL--~alTQ~S~LH~~~~~~vd~~~~~~al~~~q---TTSPSY~LmASL 284 (417)
T PF01276_consen 211 RFHPLPKSAL-AMGADDPEDPAILVVQSTHKTL--PALTQASMLHVKGDRIVDHERVNEALMMLQ---TTSPSYLLMASL 284 (417)
T ss_dssp CCSGGGCCCS-STT-------EEEEEEEHHHHS--S--TT-EEEEEE-GGG--HHHHHHHHHHCS----SS--CHHHHHH
T ss_pred CCCCCCCCHH-HCCCCCCCCCCEEEEEEHHHCC--CCCCHHEEEEECCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_conf 5386754775-6479655676326886221125--674600377877997777999999999875---888389999999
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 9999998--5652589999999999999999999727994553588
Q T0591 291 AVLRGWF--DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 334 (406)
Q Consensus 291 ~a~~~~l--~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 334 (406)
.++..++ ..+.+.+++..+....-|+.+.+ ++++.++++..|+
T Consensus 285 D~A~~~m~~~~G~~l~~~~i~~a~~~R~~l~~-~~~~~~f~~~~~e 329 (417)
T PF01276_consen 285 DVARAMMEAEEGRELLEEAIELAIDFRKKLAR-LNDIWGFKPWGPE 329 (417)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHH-HH----SEESS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCHH
T ss_conf 99999975045199999999999999997513-3568867747853
No 7
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) . The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme . The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer , . PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) , . In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3ecd_D 2dkj_A 2a7v_A 1bj4_A 1eji_C 1rv3_A 1ls3_C 1cj0_B 1rvu_A 1rvy_A ....
Probab=99.57 E-value=4.8e-13 Score=104.20 Aligned_cols=335 Identities=17% Similarity=0.155 Sum_probs=195.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCCH--HHHHHHH-HHHHHHCCCCCC-CCCEEEEECCCCHH
Q ss_conf 341567867887888999999999980878888788---8898--8999999-999986488678-86707882487278
Q T0591 41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RGDL--GIRDLLA-PRLAAFTGAPVD-ARDGLIITPGTQGA 113 (406)
Q Consensus 41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G~~--~Lr~aia-~~~~~~~g~~~~-~~~~I~it~G~~~~ 113 (406)
|+|-..+ ...+|.+.+++...+...-..+|+-. .|.. +..|.+| ++.++.+|.+-+ +--+|=.-+| +++
T Consensus 23 l~LIASE---N~~S~~v~~algS~ltnkYaeG~pg~ryy~G~~~vD~iE~la~~ra~~lF~a~~~~w~anVqp~SG-s~A 98 (399)
T PF00464_consen 23 LNLIASE---NFTSPAVLEALGSDLTNKYAEGYPGKRYYGGCEYVDEIEELAIERAKKLFGAEPKEWYANVQPHSG-SQA 98 (399)
T ss_dssp EB--TT--------HHHHHH---GGGGS--------------HHHHHHHHHHHHHHHHHTT--TTT-EEE--------HH
T ss_pred EEEECCC---CCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-HHH
T ss_conf 6575575---658999999863713044778889867768877499999999999999859985455378845875-899
Q ss_pred HHHHHHHHHHCCHHHHHHHCCCHHHHHHH----------HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEE
Q ss_conf 99999999720010101310551389999----------9829969998604466677666778899999850-254034
Q T0591 114 LFLAVAATVARGDKVAIVQPDYFANRKLV----------EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVF 182 (406)
Q Consensus 114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~----------~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i 182 (406)
...++.+|++|||+|+..++...+|..-- ....++.++++++ .+...+|.|++++..+ .++|+|
T Consensus 99 n~av~~ALl~pgD~im~l~l~~GGHlthg~~~~~~k~~~~g~~~~~~~Y~~d-----~~~~~IDyd~l~~~a~~~kPklI 173 (399)
T PF00464_consen 99 NLAVYFALLKPGDRIMGLSLPHGGHLTHGYKVNFKKVSASGKFYESVPYGVD-----PETGLIDYDELEKLAKEFKPKLI 173 (399)
T ss_dssp HHHHHHHHT-S-EEEE---TT----TT---TTSSSBSSHHHHHSEE----B------TTTSSB-HHHHHHHHHHH--SEE
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC-----CCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9999999753478389536556877676766665323443543799986524-----66796679999999987699999
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCC
Q ss_conf 215666432334437899999999863787578417502-3556888765223321026786899850400104631121
Q T0591 183 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL 261 (406)
Q Consensus 183 ~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 261 (406)
++-.-+.| . .-+.+++.++|.+.|.+++.|-++- .|+-.|.-+.++. . .| |+..|..|+| +|-|-
T Consensus 174 i~G~S~y~--r---~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~p~P~~-~--AD----vVt~tTHKTl--rGPrg 239 (399)
T PF00464_consen 174 ICGASAYP--R---PIDFKRFREIADEVGAYLMADIAHIAGLIAGGLFPSPLP-Y--AD----VVTTTTHKTL--RGPRG 239 (399)
T ss_dssp EE--TS-S--S------HHHHHHHHHHTT-EEEEE-TTT---TTTTSS--GTT-T--SS----EEE--SSGGG-------
T ss_pred EECCHHCC--C---CCCHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCCCCCC-C--CC----EEECCCCCCC--CCCCE
T ss_conf 98904437--7---779999999998779899961455666512777799878-7--72----8976666566--68870
Q ss_pred HHHHHH--------------HHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 143325--------------89999999875203676124579999-9998565-2589999999999999999999727
Q T0591 262 GVAFGS--------------RAIIARMEKLQAIVSLRAAGYSQAVL-RGWFDEA-PGWMEDRIARHQAIRDELLHVLRGC 325 (406)
Q Consensus 262 G~~~~~--------------~~~i~~l~~~~~~~~~~~~~~~q~a~-~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 325 (406)
|.+... +++.+.+.+..-....+.+...+.++ +..+.+. ....++..++.-++.+.|.+.|.+.
T Consensus 240 GiIl~~~g~~~~~~~~~~~~~~~~~kI~~avFPg~qggp~~h~iAa~Ava~~Ea~~~~fk~Ya~qVv~NAkaLA~~L~~~ 319 (399)
T PF00464_consen 240 GIILTNKGYKNVDKQGKEIDEELAKKIDSAVFPGLQGGPHMHRIAALAVAFKEALSPEFKEYAKQVVKNAKALAEALNER 319 (399)
T ss_dssp --EEES----EE-T---EE-HHHHHHHHHHHTTTT-----HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 69998056555555555217999998732418764346407689999999998658438999999999999999999767
Q ss_pred CCCEEECC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHH
Q ss_conf 99455358-873078776688788989999999986891896----161026799985899850--99799999999999
Q T0591 326 EGVFARTP-QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVT----PGTEFSPHTADSVRLNFS--QDHEAAVAAARRIV 398 (406)
Q Consensus 326 ~g~~~~~p-~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~ 398 (406)
|+.+... .-...+|+++...+.+..++ ++++++.||.+. |++. .+..+.-+||... +..---++-++.|+
T Consensus 320 -G~~vv~ggTdnHlvlvD~~~~g~~g~~a-~~~L~~agI~~Nkn~iP~d~-~~~~~sGiRiGT~~~T~rG~~e~dm~~iA 396 (399)
T PF00464_consen 320 -GFRVVSGGTDNHLVLVDLRSKGLTGKEA-EKLLEEAGITVNKNTIPGDK-SPFVPSGIRIGTPALTTRGMKEDDMKEIA 396 (399)
T ss_dssp ---EE------SS-EEEEGGGGT----HH-HHHHHHTTEB-B----TT-S-TTTT----EE--HHHHHTT--HHHHHHHH
T ss_pred -CCEEEECCCCCEEEEEECCCCCCCHHHH-HHHHHHCCEEEECCCCCCCC-CCCCCCEEEECCHHHHHCCCCHHHHHHHH
T ss_conf -9748616987737999755356899999-99999779476045157877-67688868968878977699989999999
Q ss_pred HHH
Q ss_conf 999
Q T0591 399 TLV 401 (406)
Q Consensus 399 ~~~ 401 (406)
+++
T Consensus 397 ~~I 399 (399)
T PF00464_consen 397 ELI 399 (399)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 549
No 8
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This family includes tryptophanase (tryptophan indole-lyase, TNase) (4.1.99.1 from EC), tyrosine phenol-lyase (TPL) (4.1.99.2 from EC), threonine aldolase (4.1.2.5 from EC).; GO: 0016829 lyase activity, 0006520 amino acid metabolic process; PDB: 1svv_B 1v72_A 1c7g_A 1tpl_B 2vlh_B 2vlf_B 2tpl_B 2ez2_A 2ez1_A 1ax4_B ....
Probab=99.55 E-value=2.5e-15 Score=119.66 Aligned_cols=248 Identities=24% Similarity=0.241 Sum_probs=157.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 88899999999998087888878888988999999999986488678867078824872789999999972001010131
Q T0591 53 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQ 132 (406)
Q Consensus 53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~ 132 (406)
|+|.+++++.++... .. .|+...-..+|.+.+++. +|.+ ..++++++|.+-.+++++++.|++.|++..
T Consensus 7 ~t~~m~~a~a~a~~g-d~-~Yg~D~~~~~le~~ia~l----~g~e-----~a~f~~sGT~AN~lal~~~~~~~~~vi~~~ 75 (290)
T PF01212_consen 7 PTPAMLEAMAAANVG-DD-AYGEDPTTNRLEERIAEL----FGKE-----AALFVPSGTMANQLALRAHCRPGQSVICHD 75 (290)
T ss_dssp --HHEEHHHHHTT----T-T----HHHHHHHHHHHHH----HTST-----EEEEE----HHHHHHHHHHHHHHHEEEEET
T ss_pred CCHHHHHHHHHCCCC-CH-HHCCCHHHHHHHHHHHHH----HCCC-----EEEECCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 679999999720345-32-206798899999999998----5998-----699968856899999999606698899745
Q ss_pred CCCHHH---HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC------CCEEEECCCCCCCC-CCCCCHHHHHH
Q ss_conf 055138---999998299699986044666776667788999998502------54034215666432-33443789999
Q T0591 133 PDYFAN---RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNNPA-GVVYSAEEIGQ 202 (406)
Q Consensus 133 P~y~~~---~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~NPT-G~~~s~~~l~~ 202 (406)
+++... .....+.|.++++++.+. +..++++++++.+.. ++++|+|+||+|-. |.++|.+++++
T Consensus 76 ~~Hi~~~E~ga~~~~~G~~~~~l~~~~------~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~gG~v~~~~el~~ 149 (290)
T PF01212_consen 76 PAHIHFDETGAPEELSGAKLVPLPGDD------DGKLTPEDLEAAIEEHGDHAPQPALVSLENTTNSAGGTVYSLEELRA 149 (290)
T ss_dssp TESSHHCHHHHHHHH---EEEEEB-GC------GT-B-HHHHHHHHHHS-TTSTTEEEEEEESS-ST-------HHHHHH
T ss_pred CCCCCEECCCHHHHHHCCEEEEECCCC------CCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEECCHHHHHH
T ss_conf 761321174689998297899707854------57769999999833566767874079998077687988588999999
Q ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCC-CCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999863787578417502355688876-522332102678689985040010463112114332589999999875203
Q T0591 203 IAALAARYGATVIADQLYSRLRYAGASY-THLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIV 281 (406)
Q Consensus 203 i~~~a~~~~~~ii~De~Y~~l~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~ 281 (406)
|.++|++||+.+..|-+= |...-... .++.... ...| ++..|+||..++|+ =+.+++++++++...+.+...
T Consensus 150 i~~~a~~~gl~lhmDGAR--l~na~~~~~~~~~e~~-~~~D--~v~~~~tK~~ga~~--Gavl~~~~~~i~~~~~~~k~~ 222 (290)
T PF01212_consen 150 ISELAREHGLPLHMDGAR--LANAAAALGCTLAELA-AGAD--SVSFSLTKGGGAPG--GAVLAGSDDFIEEARRQRKRL 222 (290)
T ss_dssp HHHHHHHTT-EEEEE-TT--HHHHHSHHHHHHHHHH-GG-S--EEEE-TTSTT-SS---EEEEEESSGHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEHHH--HHHHHHCCCCCHHHHH-CCCC--EEEEEEEECCCCCC--CEEEECCHHHHHHHHHHHHHH
T ss_conf 999999829989997233--7765433057999996-0789--99996170476664--459982789999999999996
Q ss_pred CCCHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 676124--------57999999985652589999999999999999999727994
Q T0591 282 SLRAAG--------YSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGV 328 (406)
Q Consensus 282 ~~~~~~--------~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 328 (406)
..+... +.|.++...++.. .. ...+..++.+++.+.|...++.
T Consensus 223 Gg~m~q~G~laa~~~~~~~~l~~le~~---~~-~~~~~~~~A~~la~~l~~~~~~ 273 (290)
T PF01212_consen 223 GGGMRQAGILAAAELYQEAGLRALELW---LE-RLAHDHAMAKRLAEGLEELGGA 273 (290)
T ss_dssp H-HHHHTHHCBCHHHHHHHHHBCEEEC---CT-THHHHSHHHHHHHHSHHEEEEE
T ss_pred CCCEEECCCEEEECHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHCCCE
T ss_conf 587020561133101268888888741---68-8999999999999999978981
No 9
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2pb2_A 2pb0_B 1wkg_A 1wkh_B 1vef_B 2can_A 1gbn_B 1oat_C 2byj_A 2byl_B ....
Probab=99.31 E-value=1.8e-10 Score=86.77 Aligned_cols=247 Identities=15% Similarity=0.151 Sum_probs=149.4
Q ss_pred CCEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 8334156--78678878889999999999808788887888898899999999998648867886707882487278999
Q T0591 39 RPVDFSH--GDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406)
Q Consensus 39 ~~i~ls~--G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406)
+.|||.. |...+-+-.|.+.+++.+.+...... .......+.+..+++++....+. ..+.++++++++++...
T Consensus 17 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~--~~~~~~~~~~~~lae~L~~~~p~---~~~~v~f~~SGseAve~ 91 (339)
T PF00202_consen 17 EYLDFTSGYGVVNLGHNHPEVVEAIKEQLERLNHV--SFFGFPHPPAVELAEKLAELAPP---GLDRVFFANSGSEAVEA 91 (339)
T ss_dssp EEEBSSHHHHTT------HHHHHHHHHHHHHCSHH--STTTSEEHHHHHHHHHHHHHS-T---TESEEEEE----HHHHH
T ss_pred EEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHCCC---CCCEEEEECCCCHHHHH
T ss_conf 99986655230057888199999999999753234--32245767999999999710899---75679875688579999
Q ss_pred HHHHHH-------HCC-HHHHHHHCCCHHHHHHHHHH-CC------------EEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999997-------200-10101310551389999982-99------------6999860446667766677889999985
Q T0591 117 AVAATV-------ARG-DKVAIVQPDYFANRKLVEFF-EG------------EMVPVQLDYVSADETRAGLDLTGLEEAF 175 (406)
Q Consensus 117 ~~~~l~-------~pG-d~Vl~~~P~y~~~~~~~~~~-g~------------~~v~v~~~~~~~~~~~~~~d~~~l~~~~ 175 (406)
+++.-. .+| +.|+...-+|++........ +. ..+.+|...... +.......+.+++.+
T Consensus 92 AiklAr~y~~~~~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~ 170 (339)
T PF00202_consen 92 AIKLARQYHKKRGYTGRSKIISFEGSYHGRTLGALSVTGNPGYRKPFGPLLPGVIFVPFPDLYA-DEEEQACLEYLEELI 170 (339)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEECT------HHHCTTTTSHHHHGCCSSSSS-EEEEETTEHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHH
T ss_conf 9999866400247888747999368657787461565578755566545676530013797134-567888899999999
Q ss_pred ----CCCCEEEECCCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE
Q ss_conf ----025403421566-643233-44378999999998637875784175023556888765223321026786899850
Q T0591 176 ----KAGARVFLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG 249 (406)
Q Consensus 176 ----~~~~k~i~l~~P-~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S 249 (406)
.+++.++++ -| ..-.|. ..+++.++++.++|++||+++|.||+...|.-.|.-+.. .. ....|| |+ +
T Consensus 171 ~~~~~~~iAAvii-EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~-~~-~gv~PD--iv--~ 243 (339)
T PF00202_consen 171 AALGPDDIAAVII-EPIQGEGGVIPPPPGYLQALRELCREHGILLIFDEVQTGFGRTGKMFAF-EH-FGVEPD--IV--T 243 (339)
T ss_dssp HHHCCTTEEEEEE-ESEE-----EEB-HHHHHHHHHHHHHTT-EEEEE-S------SSTTSGG-GG-GT--SS--EE--E
T ss_pred HHHCCCCEEEEEE-EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHH-HC-CCCCCH--HH--H
T ss_conf 9747997899999-4012468962689899985898735672799997688676576786220-02-487114--99--9
Q ss_pred CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 40010463112114332589999999875203676124579999999856
Q T0591 250 PSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE 299 (406)
Q Consensus 250 ~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 299 (406)
+||.++ .|+-+|.+++.+++.+.+.......+++.+.++..++.+.|+.
T Consensus 244 ~gK~l~-gG~P~sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~ 292 (339)
T PF00202_consen 244 FGKGLG-GGLPISAVVGREEIMDAFDPGSHGSTFGGNPLACAAALATLDI 292 (339)
T ss_dssp E-TTT--E-EEEEEEEEEHHHHTTCTTTSS--TTTT-HHHHHHHHHHHHH
T ss_pred HHHHCC-CCCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 876426-8613422440488887751488666467896999889999999
No 10
>PF06838 Alum_res: Aluminium resistance protein ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria .; PDB: 3ht4_A 3gwp_B 3fd0_B.
Probab=99.25 E-value=2e-10 Score=86.44 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHCCHHHHHHH-CCCHHHHHHHHHH----------CCEEE
Q ss_conf 999999999864886788-67078824872789999999972001010131-0551389999982----------99699
Q T0591 83 RDLLAPRLAAFTGAPVDA-RDGLIITPGTQGALFLAVAATVARGDKVAIVQ-PDYFANRKLVEFF----------EGEMV 150 (406)
Q Consensus 83 r~aia~~~~~~~g~~~~~-~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~-P~y~~~~~~~~~~----------g~~~v 150 (406)
|+.+-+-+.+-+|.+.-- .-| +.+| |++|..++..++.|||+.+..+ .-|.+....+... |..-.
T Consensus 56 Rd~Le~vyA~vfgaE~ALVR~q--~vSG-THAi~~aLfg~LrPGD~ll~itG~PYDTL~eVIGi~g~~~GSL~e~GI~Y~ 132 (403)
T PF06838_consen 56 RDKLERVYADVFGAEDALVRPQ--FVSG-THAIATALFGVLRPGDELLSITGKPYDTLEEVIGIRGSGQGSLKEFGIKYD 132 (403)
T ss_dssp -HHHHHHHHHHCT-S--B-STT--S-----HHHHHHH--------EEEE------CCHHHH----S-----TGGGT-EEE
T ss_pred HHHHHHHHHHHHCCHHHHHCCC--CCCH-HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCHHHHCCCEE
T ss_conf 8999999999956355530120--0440-889999997367899868871699707679872879999888899397528
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCCCCC
Q ss_conf 98604466677666778899999850254034215-6664323344378999999998637--87578417502355688
Q T0591 151 PVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS-NPNNPAGVVYSAEEIGQIAALAARY--GATVIADQLYSRLRYAG 227 (406)
Q Consensus 151 ~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~-~P~NPTG~~~s~~~l~~i~~~a~~~--~~~ii~De~Y~~l~~~~ 227 (406)
.|++. ++..+|++.++++++++||+++|- |..--+=.+++.+++++++++.++. ++++++|+||++|+-..
T Consensus 133 ~v~L~------~dg~~D~~~i~~~i~~~tk~v~IQRS~GYs~R~slsi~~I~~~i~~ik~~~p~~ivfVDNCYGEFvE~~ 206 (403)
T PF06838_consen 133 EVDLT------EDGEIDYEAIKKAIKPKTKMVLIQRSRGYSWRPSLSIEEIKEIIKFIKEINPDVIVFVDNCYGEFVETK 206 (403)
T ss_dssp E--B-----------B-HHHHHHHHHTTEEEEEEE------SS----HHHHHHHHHHHHHH-TTSEEEEE------SSSS
T ss_pred EEEEC------CCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 99753------799828999998617565599995278876789859999999999999758983999978861201565
Q ss_pred CCCCCHHHHHCCCCCCEEEEEECCHHCCCCCC-C-CHHHHHHHHHHHHHHH
Q ss_conf 87652233210267868998504001046311-2-1143325899999998
Q T0591 228 ASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-R-LGVAFGSRAIIARMEK 276 (406)
Q Consensus 228 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R-iG~~~~~~~~i~~l~~ 276 (406)
+++..- .| ++.+|+=|.-| .|+ . -||+++.+++++....
T Consensus 207 -EP~~vG----AD----liaGSLIKNpG-GgiAptGGYIaGr~dlVe~aa~ 247 (403)
T PF06838_consen 207 -EPTEVG----AD----LIAGSLIKNPG-GGIAPTGGYIAGRKDLVEQAAY 247 (403)
T ss_dssp --GGG------------EEE--TTS-------------BB--HHHHHHHHH
T ss_pred -CCCCCC----HH----HEECCCEECCC-CCCCCCCCEEECHHHHHHHHHH
T ss_conf -853016----44----40120124798-8736757778536999999864
No 11
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating); PDB: 1wyv_A 1wyu_E 1wyt_C.
Probab=99.00 E-value=1.9e-08 Score=73.01 Aligned_cols=312 Identities=18% Similarity=0.148 Sum_probs=161.4
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 156786788788899999999998087-888878-----88898899999999998648867886707882487278999
Q T0591 43 FSHGDVDAHEPTPGAFDLFSAGVQSGG-VQAYTE-----YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 116 (406)
Q Consensus 43 ls~G~pd~~~p~~~~~~~~~~~~~~~~-~~~Y~~-----~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~ 116 (406)
++.|.-+...| ..++.. -+..+. .+.|.| ++|..+..-.....+....|.++. +.-+-.|++.+-..
T Consensus 70 iG~G~y~~~~P--~~i~~~--i~~~~ef~TaytPYQpEisQG~Lq~l~e~Qt~i~eLTGmdva---naSl~d~atA~aEa 142 (429)
T PF02347_consen 70 IGLGSYTHKVP--AVIDRN--ILSRPEFYTAYTPYQPEISQGRLQALFEYQTMICELTGMDVA---NASLYDGATAAAEA 142 (429)
T ss_dssp -------------HHHHH---HHCHHHTTTS-STTSGGGB---HHHHHHHHHHHHHH----EE----SB-----HHHH--
T ss_pred CCCCCCCCEEC--HHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCHHHHHHH
T ss_conf 36651585107--777224--334621001579999478899999999999999997697855---77888606799999
Q ss_pred HHHHH---HHCCHHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 99999---720010101310551389999----98299699986044666776667788999998502540342156664
Q T0591 117 AVAAT---VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNN 189 (406)
Q Consensus 117 ~~~~l---~~pGd~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N 189 (406)
+.++. -..+++|+++.-.++.+...+ ...|.+++-++++.. + ..| .+++.++++.|||.
T Consensus 143 ~~ma~r~~~~~~~kvlv~~~~hp~~~~v~~t~a~~~g~~iv~~~~~~~-----~-~~d--------~~~~a~v~vq~Pn~ 208 (429)
T PF02347_consen 143 MLMAVRITRRKRNKVLVPDSVHPQNRAVLRTYAEGAGIEIVTVPLDDD-----G-MDD--------DDDTAAVMVQYPNT 208 (429)
T ss_dssp -HHHHHHH-----EEEEETT--HHHHHHHHHHHHHEEEEEEEE--------------------------EEEEEEESS--
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHEEECCCEEEEECCCCC-----C-CCC--------CCCEEEEEEECCCC
T ss_conf 999999837887389976888988899998404506818999763014-----7-776--------63748998746998
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC----CCCCHHHH
Q ss_conf 32334437899999999863787578417502355688876522332102678689985040010463----11211433
Q T0591 190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAF 265 (406)
Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~~ 265 (406)
.|.+-+ +++|+++++++|.++++ -+ ++ ....-+..++....| |+++ .+|.||.| |=-.|+++
T Consensus 209 -~G~~ed---~~~i~~~~h~~gal~~~-~a--n~----~Al~~l~~Pge~GAD--I~vg-~~Q~fgiP~g~GGP~~G~~a 274 (429)
T PF02347_consen 209 -FGVFED---IEEIAEIAHEAGALVYV-GA--NP----NALGGLKSPGEMGAD--IAVG-EHQTFGIPHGFGGPGAGFFA 274 (429)
T ss_dssp ------T---HHHHHHHHHH---EEEE-E----C----CCT--B-----------EEE--TTTTT-------------BE
T ss_pred -CEEEEE---HHHHHHHHHHCCCEEEE-EE--CH----HHHCCCCCHHHCCCC--EEEE-CCCCCCCCCCCCCCCHHHHH
T ss_conf -747801---99999999985999999-95--87----887087883116766--7940-79877767678887601676
Q ss_pred HHHHHHH----------------------------HHHHHHHHCCCCHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 2589999----------------------------999875203676124579--9999998565258999999999999
Q T0591 266 GSRAIIA----------------------------RMEKLQAIVSLRAAGYSQ--AVLRGWFDEAPGWMEDRIARHQAIR 315 (406)
Q Consensus 266 ~~~~~i~----------------------------~l~~~~~~~~~~~~~~~q--~a~~~~l~~~~~~~~~~~~~~~~~r 315 (406)
..+++++ .+++.|....+|++.... .+...+.-.+.+=+++.-.....+.
T Consensus 275 ~~~~l~r~lPGRiVG~t~D~~G~~~~~LtLqtREQhIrReKAtSNIctnqaL~A~~A~~Y~~~~Gp~GL~~iA~~~~~~A 354 (429)
T PF02347_consen 275 VRKELVRQLPGRIVGVTKDADGKRAYRLTLQTREQHIRREKATSNICTNQALLALAAAMYASYHGPEGLKEIAERIHLNA 354 (429)
T ss_dssp E-GGGGGGS-S-EEEB--BE------EEE-GGGTCHHHGGCSS----S--HHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 58988866898845531136677136753256765210000000024418999999999999879789999999999999
Q ss_pred HHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 99999997279945535887307877668878898999999998689189616102679998589985099799999999
Q T0591 316 DELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAAR 395 (406)
Q Consensus 316 ~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~ 395 (406)
..+.+.|.++.+.. .++.-||=++.... .+ .. +..++++ ++. .|-.|.....+.+-+|+. +-.-++-++
T Consensus 355 ~yl~~~L~~~~~~~--~~~~~f~e~v~~~~--~~-~~-~~~l~~~-~~~--~gl~~~~~~~~~~~i~~t--E~~t~~~id 423 (429)
T PF02347_consen 355 NYLAKRLKEIFGLP--FPGPFFFEFVTVFP--KD-KK-VEELLKR-GIA--GGLNLRYPDDGALLICVT--ETRTKEDID 423 (429)
T ss_dssp HHHHHHHCC--BEC--TS-SS-SSEEEEES--S--HH-HHHHHH---------EEETT----EEEEE----TT--HHHHH
T ss_pred HHHHHHHHHHCCCC--CCCCCCEEEEEECC--CC-HH-HHHHHHH-HHH--CCCCCCCCCCCEEEEEEC--CCCCHHHHH
T ss_conf 99999988753866--67978111442128--73-66-9999999-996--698754058997999834--799999999
Q ss_pred HHHHH
Q ss_conf 99999
Q T0591 396 RIVTL 400 (406)
Q Consensus 396 rl~~~ 400 (406)
+|.++
T Consensus 424 ~l~~~ 428 (429)
T PF02347_consen 424 ALVQA 428 (429)
T ss_dssp HHHH-
T ss_pred HHHHC
T ss_conf 99853
No 12
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group , . Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine ; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine . These enzymes belong to the group II decarboxylases , .; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 2qma_B 2okk_A 1es0_B 2okj_A 2jis_B 1xey_B 2dgk_D 1pmm_F 3fz6_E 2dgl_C ....
Probab=98.96 E-value=5.8e-08 Score=69.78 Aligned_cols=261 Identities=17% Similarity=0.245 Sum_probs=147.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCCEEEEECCCCHHHHHHHHHHHH--------CC-
Q ss_conf 99999998087888878888988999999999986488678----867078824872789999999972--------00-
Q T0591 59 DLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVD----ARDGLIITPGTQGALFLAVAATVA--------RG- 125 (406)
Q Consensus 59 ~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~----~~~~I~it~G~~~~l~~~~~~l~~--------pG- 125 (406)
+.+...+. .....|....+..++-+.+.+|+.+..|.+.. ++..=++|+|++++...++.+.-+ .|
T Consensus 58 d~l~~~~n-~n~~~~~~sP~~t~iE~~vi~wl~~l~g~~~~~~~~~~~~G~~tsGgs~anl~al~aAR~~~~~~~~~~~~ 136 (373)
T PF00282_consen 58 DLLASALN-QNGLTWESSPAATEIEREVIDWLAELLGLPASFYDSGEAGGIFTSGGSEANLTALLAARDRALPRVKAEGV 136 (373)
T ss_dssp HHHHHHHT--BTT-TTTSHHHHHHHHHHHHHHHHHTT--GGG-TTTT-B--EE--HHHHHHHHHHHHHHHHHHHHHCH-T
T ss_pred HHHHHHHC-CCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998613-56435467861243189999999999589742002578842883553899999999999998665421466
Q ss_pred ----H-HHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC-----CEEEECC-CCCCCCCCC
Q ss_conf ----1-0101310551389999982996999860446667766677889999985025-----4034215-666432334
Q T0591 126 ----D-KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG-----ARVFLFS-NPNNPAGVV 194 (406)
Q Consensus 126 ----d-~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~-----~k~i~l~-~P~NPTG~~ 194 (406)
. .|++..=++++....+...|..++.||++. ++.+|+++|++.+.+. +-++++. -..-.||.
T Consensus 137 ~~~~~~~i~~s~~aH~s~~Kaa~~lGlgv~~Vp~d~------~~~md~~~L~~~i~~~~~~G~~p~~VvataGtT~~Ga- 209 (373)
T PF00282_consen 137 REIGRPVIYCSEQAHYSIKKAARILGLGVRVVPTDE------NGRMDVDALEKAIEEDRAAGKTPFAVVATAGTTNTGA- 209 (373)
T ss_dssp TTSSSEEEEEETTS-THHHHHHHHTT-EEEEE-B-T------TSSB-HHHHHHHHHHHHHT--EEEEEEEE---TTT---
T ss_pred CCCCCEEEEEECHHHHHHHHHHHHCCCCEEEECCCC------CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-
T ss_conf 556760587621214799999985797328932386------6573899999998873025665358885268866553-
Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHH-
Q ss_conf 437899999999863787578417502355688876522332102678689985040010463112114332-589999-
Q T0591 195 YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIA- 272 (406)
Q Consensus 195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~- 272 (406)
-+.+++|.++|+++++|+-+|-+|+...+--+....+ ......-..|. ....|.+.+| +-+|++.. +++...
T Consensus 210 --iD~l~~i~~i~~~~~~wlHVDaA~GG~~~~~~~~r~~--~~gle~aDSit-~d~HK~l~~p-~~~~~ll~r~~~~l~~ 283 (373)
T PF00282_consen 210 --IDPLEEIADICRKYNLWLHVDAAYGGSALLSPFYRHL--LFGLERADSIT-IDPHKWLYVP-YGCGVLLVRDKELLRS 283 (373)
T ss_dssp -----HHHHHHHHHHHT-EEEEEES----GGGHTTTGGG--GTTSTTESEEE-E-TTSTTS---SS-EEEEESSGGGHHG
T ss_pred --HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCHH--HCCCCCCEEEE-ECHHHHCCCC-CCCEEEEECCHHHHHH
T ss_conf --2009999889863697568623545524430231011--04874440588-8828845666-1465777447777777
Q ss_pred HHHHHHHHC----------------CCCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 999875203----------------6761245799999998---565258999999999999999999972799455358
Q T0591 273 RMEKLQAIV----------------SLRAAGYSQAVLRGWF---DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP 333 (406)
Q Consensus 273 ~l~~~~~~~----------------~~~~~~~~q~a~~~~l---~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p 333 (406)
.+..-..+. ++..+. ...++..|+ .-+.+-.++...+.-+..+.+.+.+++.+.++...|
T Consensus 284 ~~~~~a~Yl~~~~~~~~~~~d~~~~tl~~sR-~~~alk~W~~l~~~G~~g~~~~i~~~~~~A~~~~~~i~~~~~~el~~~ 362 (373)
T PF00282_consen 284 AFSINADYLFHPDRESDDSYDYGDWTLEGSR-RFRALKLWASLRSLGREGYREMIERCIELARYFAELIRASPDFELVNP 362 (373)
T ss_dssp GG-EEBTTSS-S-SSS-GGGSBCCTSS--S--B-CHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTTTEEESST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 6526923025741004477773675689983-237999999999968998999999999999999999974889799758
Q ss_pred C
Q ss_conf 8
Q T0591 334 Q 334 (406)
Q Consensus 334 ~ 334 (406)
.
T Consensus 363 ~ 363 (373)
T PF00282_consen 363 P 363 (373)
T ss_dssp -
T ss_pred C
T ss_conf 9
No 13
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2aeu_A 2aev_A.
Probab=98.66 E-value=8e-09 Score=75.61 Aligned_cols=253 Identities=19% Similarity=0.234 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 88999999999980878888788889889999-99999986488678867078824872789999999972001010131
Q T0591 54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDL-LAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQ 132 (406)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~a-ia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~ 132 (406)
++.+++++.+.+.......|--..|...-|.. +...+.+..| .++ .+++|....++++++.++.. |.+|++..
T Consensus 19 s~~a~~a~~~~~~~y~nLE~dL~~G~RG~R~~~v~~ll~~ltg----AEa-A~VVNNNAAAV~L~L~~la~-~kEVIVSR 92 (367)
T PF03841_consen 19 SEEAIDAVKEVASGYSNLEYDLETGKRGSRYSHVEELLCELTG----AEA-ALVVNNNAAAVLLALNTLAA-GKEVIVSR 92 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 2222222222222222222222222222222222222222222----222-22222222222222222222-22222222
Q ss_pred CCC------HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC--CCCCCHHHHHHHH
Q ss_conf 055------13899999829969998604466677666778899999850254034215666432--3344378999999
Q T0591 133 PDY------FANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPA--GVVYSAEEIGQIA 204 (406)
Q Consensus 133 P~y------~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPT--G~~~s~~~l~~i~ 204 (406)
=-- +-...+++..|++++.|... ..-.+.+++++++++|.+++...++|-. |-+- .-.+++++
T Consensus 93 GelVeiGg~FRIpdvm~~sGa~LvEVGtT--------N~T~~~Dye~AI~e~Ta~llkVh~Sn~~i~GFt~-~~~~~el~ 163 (367)
T PF03841_consen 93 GELVEIGGSFRIPDVMRQSGAKLVEVGTT--------NRTHLRDYENAINENTAALLKVHTSNFRIQGFTE-EVSLEELA 163 (367)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHH
T ss_conf 22222222222222222222222222222--------2222222222222222222222222222222234-44799999
Q ss_pred HHHHHCCCEEEECCCCCCCC---CCCCC-CCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99863787578417502355---68887-652233210267868998504001046311211433258999999987520
Q T0591 205 ALAARYGATVIADQLYSRLR---YAGAS-YTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAI 280 (406)
Q Consensus 205 ~~a~~~~~~ii~De~Y~~l~---~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~ 280 (406)
++|++|++++++|..-+.+. ..+-+ -+.+......- --++++|-.|.++-| ..|.++|.+++|+++++....
T Consensus 164 ~la~~~~ip~i~DlgSG~l~dl~~~gl~~Ep~v~~~l~~G--aDlV~fSGdKlLgGP--QAGiI~Gkk~lI~~lk~~~l~ 239 (367)
T PF03841_consen 164 ELAKEHGIPVIVDLGSGSLVDLSKYGLPDEPTVQEALAAG--ADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKHPLG 239 (367)
T ss_dssp HHHHHHT--EEEE------HHHHTT----------CCC------EEE--TTSS----------EE--HHHHHHHHH----
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCC--CCEEEEECCEECCCC--CCEEEEEHHHHHHHHHHCCCC
T ss_conf 9986659988998999865477512463025599999779--998998899817899--836995139999999777876
Q ss_pred CCCCHHHHHHHHHHH----HHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 367612457999999----98565--------2589999999999999999999727
Q T0591 281 VSLRAAGYSQAVLRG----WFDEA--------PGWMEDRIARHQAIRDELLHVLRGC 325 (406)
Q Consensus 281 ~~~~~~~~~q~a~~~----~l~~~--------~~~~~~~~~~~~~~r~~l~~~L~~~ 325 (406)
-.+-+....-.++.. +++.. ...+....+.++.+.+.+.+.|...
T Consensus 240 RalrvdK~tlaaL~atL~~y~~~~~~~~~ip~l~mL~~~~~~l~~rA~~L~~~l~~~ 296 (367)
T PF03841_consen 240 RALRVDKETLAALEATLRLYLDPDKAAEEIPTLRMLTESLEELRARAERLAAALKAA 296 (367)
T ss_dssp ------HHHH---HHHHHH--------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 400479999999999999999860122212222222222222222222222222222
No 14
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis . The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway . The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; PDB: 2e7j_B 2e7i_B 2z67_B 3bcb_A 3bc8_A 3bca_A.
Probab=98.37 E-value=5.7e-05 Score=49.55 Aligned_cols=295 Identities=16% Similarity=0.138 Sum_probs=152.5
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCCHH-HHHHHHHHH--HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCC
Q ss_conf 99998648867886707882487278-999999997--200101013105513899999829969998604466677666
Q T0591 88 PRLAAFTGAPVDARDGLIITPGTQGA-LFLAVAATV--ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRA 164 (406)
Q Consensus 88 ~~~~~~~g~~~~~~~~I~it~G~~~~-l~~~~~~l~--~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~ 164 (406)
+++ +..|++-. . ..++.+-+|.- |.+.+.++- ..++.|+.+.-...+-..++..+|.+++-||... .++..
T Consensus 64 d~~-~~~G~~~~-~-~~~~vP~aTGm~l~l~l~a~~~~~~a~~ViwsridqkSc~kai~~AGl~~~vV~~~~---~~d~l 137 (389)
T PF05889_consen 64 DAL-RIAGLRSC-K-SCFVVPMATGMSLTLCLLALRKRPKADYVIWSRIDQKSCFKAIERAGLEPVVVPTVL---EGDEL 137 (389)
T ss_dssp HHH-HH---CCH-C--EECHSS----HHHHHHHHHHHHCC--EEEEEEEETHHHHHHHHH---EEEEE-BEE---TTT-E
T ss_pred HHH-HHCCCCCC-C-EEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCC---CCCCC
T ss_conf 999-97498510-3-068840334232999999974357886799950365206899996697279965356---78700
Q ss_pred CCCHHHHHHHHCC---CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH-HCCC
Q ss_conf 7788999998502---54034215666432334437899999999863787578417502355688876522332-1026
Q T0591 165 GLDLTGLEEAFKA---GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE-AAVD 240 (406)
Q Consensus 165 ~~d~~~l~~~~~~---~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~-~~~~ 240 (406)
..|.+.+++.+.+ ...+.++++++=--+.. .+++.+|+++|+++|++.|+..+|+-- ........ .+..
T Consensus 138 ~td~~~ie~~ie~~g~~~ilcvltttscfapr~--~D~i~~Iaklc~~~~IPhlvNnAYgvQ-----~~~~~~~l~~a~~ 210 (389)
T PF05889_consen 138 ITDEEAIEKAIEELGADNILCVLTTTSCFAPRN--PDDIEEIAKLCKEYDIPHLVNNAYGVQ-----SSYIMHLLEKAWR 210 (389)
T ss_dssp E-HHHHHHHHHHHCH-TCEEEEEEESS--TTB------HHHHHHHHHHHT--EEEE---TTT------HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHHCCCCEEECCCCHHH-----HHHHHHHHHHHHH
T ss_conf 585899999999728887689998047658888--741999999999819976972511112-----5989999987644
Q ss_pred CCC-EEEEEECCHHCCCCCCCCH--HHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH----HHHHHHHHHH
Q ss_conf 786-8998504001046311211--4332-589999999875203676124579999999856525----8999999999
Q T0591 241 AEN-VVTIMGPSKTESLSGYRLG--VAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG----WMEDRIARHQ 312 (406)
Q Consensus 241 ~~~-~i~~~S~SK~~~~~GlRiG--~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~----~~~~~~~~~~ 312 (406)
..| -+++.|.-|.|=.| +| .+++ ++..+..+.+.--...+.++... ....++.-+.. .+.++.+.+.
T Consensus 211 ~GRvD~~vqStDKNFlVp---vGgai~as~~~~~v~~is~~YpgRas~s~~ld--~fitLlsLG~tg~~~ll~~r~~~f~ 285 (389)
T PF05889_consen 211 VGRVDAVVQSTDKNFLVP---VGGAIMASSDPSGVLAISKEYPGRASRSPILD--LFITLLSLGCTGYGALLKERMASFP 285 (389)
T ss_dssp S---SEEECTHHHHHC---------CEEES-HHHHHHHCCCGHHHHTSHHHHH--HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCEEEE---CCCCEEEECCHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 132223787359886820---49838882587899999866799541565079--9999998605567789999999999
Q ss_pred HHHHHHHHHHHHCCCCEE-ECCCCCEEEEEECCCCC----CCHHHHHHHHHHHCCEE----EEECCCCCCC-----CCCE
Q ss_conf 999999999972799455-35887307877668878----89899999999868918----9616102679-----9985
Q T0591 313 AIRDELLHVLRGCEGVFA-RTPQAGSYLFPRLPKLA----VAPAEFVKILRLQAGVV----VTPGTEFSPH-----TADS 378 (406)
Q Consensus 313 ~~r~~l~~~L~~~~g~~~-~~p~gg~~~w~~~~~~~----~~~~~~~~~Ll~~~gV~----v~pG~~Fg~~-----~~~~ 378 (406)
...+++.+.-.+. +-.. ..|..-.-+-+.++... .+...|...| ...||. |+|+..+... ...|
T Consensus 286 ~l~erl~~~a~e~-~e~l~~~p~N~is~aitl~~l~~~~~k~~~~lgs~L-~~RgVsG~RvV~~~~~~~ts~~~~~~~~Y 363 (389)
T PF05889_consen 286 YLKERLKKWAEEV-GERLLETPRNHISIAITLPTLDEISQKDITFLGSML-FSRGVSGIRVVTPTWKKQTSHLDEYPVPY 363 (389)
T ss_dssp HHHHHHHHHHHHC-CEEB---TT-SSEEEEE-CCCHHHCCSHHHHHHHHH-HHTTEE--E-EETT---EESSSS--SSSE
T ss_pred HHHHHHHHHHHHH-HCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCCCCEECCCCCCCCCCCCCCCCHH
T ss_conf 9999999999986-031431578972689965654323211088999999-74887555110468885534677777316
Q ss_pred EEEE--ECCCHHHHHHHHHHHHHHHH
Q ss_conf 8998--50997999999999999999
Q T0591 379 VRLN--FSQDHEAAVAAARRIVTLVE 402 (406)
Q Consensus 379 iRis--~~~~~e~l~~al~rl~~~~~ 402 (406)
+-++ ++.++|+++..++||.+.++
T Consensus 364 l~~asaiG~t~eevd~~~~~l~k~~~ 389 (389)
T PF05889_consen 364 LTAASAIGLTREEVDYFVDRLDKILK 389 (389)
T ss_dssp EEEEE-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 68888808989999999999988649
No 15
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 1n2s_A 1kbz_A 1kc1_A 1kc3_A 2ggs_A 1vl0_B.
Probab=80.12 E-value=1 Score=20.70 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHCC-CCEEEECCCC-C-------CCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 7788999998502-5403421566-6-------43233-44378999999998637875784175023556888765223
Q T0591 165 GLDLTGLEEAFKA-GARVFLFSNP-N-------NPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLR 234 (406)
Q Consensus 165 ~~d~~~l~~~~~~-~~k~i~l~~P-~-------NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~ 234 (406)
.-|.+++++.+.. ++..|+-|-- + ||-.. .....--..|+++|+++++.+|.=- .+.+|+|....+..
T Consensus 37 ~~~~~~v~~~~~~~~pd~VIn~Aa~t~~d~~e~~~~~a~~vN~~~~~~la~~~~~~~~~li~iS--Td~VFdG~~~~py~ 114 (286)
T PF04321_consen 37 LTDPEAVEKLLEDVKPDVVINCAAYTNVDACESNPEEAYLVNVEAPKNLAEACKEHGARLIHIS--TDYVFDGTSGGPYD 114 (286)
T ss_dssp TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHTTT--EEEEEE--EGGG-----SS-B-
T ss_pred CCCHHHHHHHHHHCCCCEEEECHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC--CEEEECCCCCCCCC
T ss_conf 9898999999996299989954011366555318798998899999999999996599099953--30477688899888
Q ss_pred HHHCCCCCCEEEEEECCHHCC----------CCCCCCHHHHHH--HHHHHHHHH
Q ss_conf 321026786899850400104----------631121143325--899999998
Q T0591 235 AEAAVDAENVVTIMGPSKTES----------LSGYRLGVAFGS--RAIIARMEK 276 (406)
Q Consensus 235 ~~~~~~~~~~i~~~S~SK~~~----------~~GlRiG~~~~~--~~~i~~l~~ 276 (406)
......+ +..++-||.-+ ..=+|++|+.++ ..++..+.+
T Consensus 115 E~d~~~P---~~~YG~sK~~~E~~v~~~~~~~~IlR~~~v~g~~~~~f~~~~~~ 165 (286)
T PF04321_consen 115 EDDEPNP---LNVYGRSKLEAEQAVLAANPDALILRTSWVYGPGGRNFLTWLLR 165 (286)
T ss_dssp TTS-------SS----TTT---HHHHHH-SSEEEEEE-SEES-----HHHHHHH
T ss_pred CCCCCCC---CCHHHHHHHHHHHHHHHHCCCEEEEECEEECCCCCCCHHHHHHH
T ss_conf 9999999---89999999988899998579879995628708888879999998
No 16
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside .; PDB: 2epk_X 2epo_A 2epn_B 2epl_X 2epm_X 1yht_A 1hp5_A 1m01_A 1hp4_A 1m03_A ....
Probab=75.99 E-value=1.7 Score=19.18 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 4437899999999863787578
Q T0591 194 VYSAEEIGQIAALAARYGATVI 215 (406)
Q Consensus 194 ~~s~~~l~~i~~~a~~~~~~ii 215 (406)
.||++++++|++.|+++|+-||
T Consensus 68 ~YT~~di~eiv~yA~~~gI~vI 89 (350)
T PF00728_consen 68 YYTKEDIREIVAYAKERGIEVI 89 (350)
T ss_dssp EB-HHHHHHHHHHHHHTT-EEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEE
T ss_conf 6199999999999998499898
No 17
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 2qh8_A.
Probab=69.76 E-value=1.5 Score=19.53 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHH---HHHCCCHHHHHHHHHHCCEE
Q ss_conf 878888988999999999986488678867078824872789999999972001010---13105513899999829969
Q T0591 73 YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVA---IVQPDYFANRKLVEFFEGEM 149 (406)
Q Consensus 73 Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl---~~~P~y~~~~~~~~~~g~~~ 149 (406)
|-..+|.++...++++.+... . .| ++++.|+..+.. +.....+ +-.|+ +.+|............|..+
T Consensus 38 ~~~a~~d~~~~~~i~~~l~~~-----~-~D-lIva~gt~aa~~-l~~~~~~-~iPIVf~~V~dp~~~glv~s~~~pg~nv 108 (294)
T PF04392_consen 38 YRNANGDPERLAAIARKLVAD-----K-PD-LIVAIGTPAAQA-LAKAIKD-DIPIVFSGVSDPVGAGLVPSLDRPGGNV 108 (294)
T ss_dssp EEE----HHHHHHHHHHH-----------S-EEE---HHHHHH-HHHH-SS--S-EEEEEES------S-S-SS-----E
T ss_pred EECCCCCHHHHHHHHHHHHHC-----C-CC-EEEEECCHHHHH-HHHHHCC-CCCEEEEECCCHHHCCCCCCCCCCCCCE
T ss_conf 934788999999999999756-----9-99-999918499999-9973078-8649999716834335665566899988
Q ss_pred EEEEECCCCCCCCCCCCCHHHHH---HHHCCCC-EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 99860446667766677889999---9850254-0342156664323344378999999998637875784
Q T0591 150 VPVQLDYVSADETRAGLDLTGLE---EAFKAGA-RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 216 (406)
Q Consensus 150 v~v~~~~~~~~~~~~~~d~~~l~---~~~~~~~-k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~ 216 (406)
.+|- + ..+.+..- +.+.|.. ++-++.+|+++.+ ....+.+-+.+++.|+-++.
T Consensus 109 TGv~-~---------~~~~~~~l~ll~~l~P~~k~igvly~~~~~~~----~~~~~~~~~~a~~~gi~l~~ 165 (294)
T PF04392_consen 109 TGVS-E---------PVPVEKQLELLKELLPDAKRIGVLYDPSEPNS----VAQVEELKAAAKELGIELVE 165 (294)
T ss_dssp E-EE--------------HHHHHHHHHHHSTT--EE-EEE----HHH----HHHHHHHHHHHHH---EEEE
T ss_pred EEEE-E---------CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHCCCEEEE
T ss_conf 9999-1---------57899999999986878868999978988546----99999999999986987999
No 18
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain . More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 2dh3_A 2dh2_A 3dhu_D 1gju_A 1gjw_A 3edf_B 3edd_A 3edk_A 3ede_B 3edj_B ....
Probab=62.75 E-value=2.7 Score=17.85 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 37899999999863787578417502355
Q T0591 196 SAEEIGQIAALAARYGATVIADQLYSRLR 224 (406)
Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406)
+.++++++++-|+++|+.||.|-++.+..
T Consensus 50 t~~d~~~lv~~~H~~Gi~vi~D~V~NH~~ 78 (316)
T PF00128_consen 50 TEDDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEEEETSBEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 38999999999983656499826406655
No 19
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 1x7f_A 2p0o_A.
Probab=60.41 E-value=3.1 Score=17.51 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHHCCCEE
Q ss_conf 43789999999986378757
Q T0591 195 YSAEEIGQIAALAARYGATV 214 (406)
Q Consensus 195 ~s~~~l~~i~~~a~~~~~~i 214 (406)
+|.+...+--++.+++|+.+
T Consensus 153 Ls~~~f~~~n~~~k~~gi~t 172 (357)
T PF05913_consen 153 LSLEFFIEKNRWFKEYGIRT 172 (357)
T ss_dssp --HHHHHHHHHHHHH---EE
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 79999999999999769967
No 20
>PF04002 DUF2466: Protein of unknown function (DUF2466); InterPro: IPR001405 RadC is a DNA repair protein found in many bacteria. They share a region of similarity at the C-terminus that contains two perfectly conserved histidine residues.; GO: 0006281 DNA repair; PDB: 2qlc_H.
Probab=59.96 E-value=3.6 Score=17.00 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=28.6
Q ss_pred CCCHHH-HHHHHCCCCEEEECCCCCC-CCCCCC-CHHHH---HHHHHHHHHCCCEEE
Q ss_conf 778899-9998502540342156664-323344-37899---999999863787578
Q T0591 165 GLDLTG-LEEAFKAGARVFLFSNPNN-PAGVVY-SAEEI---GQIAALAARYGATVI 215 (406)
Q Consensus 165 ~~d~~~-l~~~~~~~~k~i~l~~P~N-PTG~~~-s~~~l---~~i~~~a~~~~~~ii 215 (406)
..++-+ ++.+++.+...++++ || |+|..- |.+++ +++.+.++.-|+.++
T Consensus 50 ~v~pReI~~~Al~~~A~~vIl~--HNHPSG~~~PS~~D~~~T~~l~~a~~~l~I~ll 104 (123)
T PF04002_consen 50 SVDPREIFRRALKHNASAVILA--HNHPSGDPEPSQEDIELTRRLKEAGQLLGIRLL 104 (123)
T ss_dssp GCSHHHHHHHHHHTT-SEEEEE--EE------S--HHHHHHHHHHHH---TTS-EEE
T ss_pred CCCHHHHHHHHHHHCCCEEEEE--EECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 5258999999998189869999--712689898888899999999999998699798
No 21
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 This family consists of uncharacterised bacterial proteins.; PDB: 3bww_A.
Probab=59.35 E-value=3.7 Score=16.93 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=31.3
Q ss_pred EECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCEEEEC--CCCCCCCCCCCCCCCHHHHHCCCCCCEEEEE
Q ss_conf 42156664---3233443789999999986378757841--7502355688876522332102678689985
Q T0591 182 FLFSNPNN---PAGVVYSAEEIGQIAALAARYGATVIAD--QLYSRLRYAGASYTHLRAEAAVDAENVVTIM 248 (406)
Q Consensus 182 i~l~~P~N---PTG~~~s~~~l~~i~~~a~~~~~~ii~D--e~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 248 (406)
+++-||+- ..+..|+ +.+-+.+++++.|+.++.| .+|..-...|.. +.........++|..++
T Consensus 135 lllEN~s~Y~~~~~~~m~--E~eFl~el~~rtgc~LLLDvnNvyvna~N~g~D--p~~yl~~lPlerV~eiH 202 (274)
T PF05114_consen 135 LLLENPSSYLPFPDSEMS--EPEFLAELVERTGCGLLLDVNNVYVNAVNHGFD--PYEYLDRLPLERVVEIH 202 (274)
T ss_dssp -EEB----S-B-TT-SS---HHHHHHHHHHHHT---EEEHHHHHHHHHH------HHHHHHHS-GGG--EEE
T ss_pred EEEECHHHHCCCCCCCCC--HHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC--HHHHHHHCCHHHEEEEE
T ss_conf 698370764488857679--999999999973998899722302320107989--99999738997928888
No 22
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 3dbn_A 3bdk_B 3ban_A 1tz9_A.
Probab=56.46 E-value=2.4 Score=18.28 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=16.4
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 54034215666432334437899999999863787
Q T0591 178 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA 212 (406)
Q Consensus 178 ~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~ 212 (406)
+...|+-.-+++|.|-+|+.++++++.+.+.++|+
T Consensus 25 G~~gIV~aLh~ip~GevW~~e~I~~~k~~ie~~GL 59 (351)
T PF03786_consen 25 GATGIVTALHDIPNGEVWPLEEIQALKAQIEAAGL 59 (351)
T ss_dssp -----EE--SSS-------HHHHHHHHHHHHC---
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97660014878999994899999999999997697
No 23
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This is a family of YdjC-like proteins. It is possibly involved in the the cleavage of cellobiose-phosphate .; PDB: 2e67_C 2i5i_B.
Probab=45.86 E-value=6 Score=15.52 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHCCCCEEEEC--CCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 77889999985025403421--566643---2334437899999999863787578
Q T0591 165 GLDLTGLEEAFKAGARVFLF--SNPNNP---AGVVYSAEEIGQIAALAARYGATVI 215 (406)
Q Consensus 165 ~~d~~~l~~~~~~~~k~i~l--~~P~NP---TG~~~s~~~l~~i~~~a~~~~~~ii 215 (406)
.++.++++..++.+...+.- ..|.-= -+...-+..++.++++++++++.++
T Consensus 98 ~~~~~~v~~El~AQi~~f~~~G~~p~hiD~H~h~h~~p~v~~~~~~~a~~y~lp~~ 153 (261)
T PF04794_consen 98 RADPEEVRAELRAQIDRFLAMGIPPDHIDGHQHVHQLPGVRDALLRLAKEYGLPWV 153 (261)
T ss_dssp C--HHHHHHHHHHHHHHHCCS---ECEEEEGGG-TTSCCCHHHHHHHHHHCT-EB-
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999999999998198988665565110577799999999998299721
No 24
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease domain
Probab=41.86 E-value=6.9 Score=15.11 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHCCH-HHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC-
Q ss_conf 72789999999972001-0101310551389999982996999860446667766677889999985025403421566-
Q T0591 110 TQGALFLAVAATVARGD-KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNP- 187 (406)
Q Consensus 110 ~~~~l~~~~~~l~~pGd-~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P- 187 (406)
+..+|..++..|...|- .+++..|.|. +.. ...-.-+.+.|+++.+. ..+++ +|
T Consensus 23 ~~~~i~~~v~~f~~rG~~~i~v~~~~~~-~~~--------------------~~~~~~~~~~L~~L~~~--~~l~~-tP~ 78 (155)
T PF11977_consen 23 SCRGIAAAVEYFKKRGHEVIVVFPPNYR-YKK--------------------PDDKSDNQHLLEKLIRL--GLLYF-TPS 78 (155)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECHHH-HCC--------------------CCCCCCCHHHHHHHHHC--CEEEE-ECC
T ss_conf 9899999999999859984799904132-024--------------------66888729999999878--94998-079
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf -64323344378999999998637875784175023556
Q T0591 188 -NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 225 (406)
Q Consensus 188 -~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~ 225 (406)
+|+.....+-++ .-|+++|.+.+..||+-|=|.+..+
T Consensus 79 ~~~~g~~~~~ydD-~~iL~~A~~~~~~IVSND~~RD~~~ 116 (155)
T PF11977_consen 79 GSNDGSRIRCYDD-RYILYAAEEKDGVIVSNDRYRDHRF 116 (155)
T ss_pred CCCCCCCCCCCCH-HHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 9876763321247-9999999982988980717888875
No 25
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a family of bacterial and archaeal proteins of unknown function.
Probab=40.48 E-value=7.3 Score=14.97 Aligned_cols=86 Identities=21% Similarity=0.204 Sum_probs=49.4
Q ss_pred HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 72001010131055138999998299699986044666776667788999998502540342156664323344378999
Q T0591 122 VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIG 201 (406)
Q Consensus 122 ~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~ 201 (406)
..+|++|.+.-- |..+...++..|.++.-+.++........... .+.....+-+...++++ ||+++-...+.
T Consensus 109 ~~~~~kV~vVG~-~~P~v~~l~~~g~~~~v~e~~~~~~~~~~~~~-~~~~~~~~l~~~D~v~i------TGsTlvN~Tl~ 180 (232)
T PF04016_consen 109 IYPGKKVAVVGY-FQPIVKRLRERGAELRVLERNPENIGPQEGDL-PDEAAEELLPWADVVLI------TGSTLVNGTLD 180 (232)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHCCCCEEEE------EECCEECCCHH
T ss_conf 479998999917-71889999863995799978875456666787-72677776344888999------96730228999
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99999863787578
Q T0591 202 QIAALAARYGATVI 215 (406)
Q Consensus 202 ~i~~~a~~~~~~ii 215 (406)
+|++.|++....++
T Consensus 181 ~lL~~~~~~~~vvl 194 (232)
T PF04016_consen 181 RLLALAKRAAPVVL 194 (232)
T ss_pred HHHHHCCCCCEEEE
T ss_conf 99973866885999
No 26
>PF10609 ParA: ParA/MinD ATPase like; PDB: 2ph1_A.
Probab=37.18 E-value=8.2 Score=14.63 Aligned_cols=34 Identities=3% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 254034215666432334437899999999863787578
Q T0591 177 AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI 215 (406)
Q Consensus 177 ~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii 215 (406)
+...++++++|++ ++..+.++.++++++.++.|+
T Consensus 24 ~~~g~iiVTTPq~-----~a~~dv~r~i~~~~k~~ipil 57 (81)
T PF10609_consen 24 PIDGAIIVTTPQE-----VALADVRRAIDMFRKLNIPIL 57 (81)
T ss_dssp -----EEEE-SSS-------HHHHHHHHHHHHTTT----
T ss_pred CCCEEEEEECCHH-----HHHHHHHHHHHHHHHCCCCEE
T ss_conf 8860999979838-----899999999999997399679
No 27
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A or as the glycosyl hydrolases family 5 . One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1h1n_B 1gzj_B 2whj_A 2whl_A 1wky_A 3man_A 1bqc_A 2man_A 1vrx_A 1ece_A ....
Probab=36.90 E-value=8.2 Score=14.60 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=4.3
Q ss_pred HHCCEEEEEEE
Q ss_conf 82996999860
Q T0591 144 FFEGEMVPVQL 154 (406)
Q Consensus 144 ~~g~~~v~v~~ 154 (406)
..|++.|.+|+
T Consensus 37 ~~G~n~VRipv 47 (287)
T PF00150_consen 37 AAGFNTVRIPV 47 (287)
T ss_dssp HHHHHEEEEEE
T ss_pred HHCCCEEEECC
T ss_conf 82999898781
No 28
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds . Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) . Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate , which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) . Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde . Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1u83_A 1qwg_A.
Probab=33.04 E-value=7.9 Score=14.74 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEE
Q ss_conf 8999999999986488678867078824872789999999972001010131055138999998299699986
Q T0591 81 GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQ 153 (406)
Q Consensus 81 ~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~ 153 (406)
.||+.|.- .+.+ +|.+..|++- +..+..+| .+..|...++..|++.+.+-
T Consensus 55 ~l~eki~l--~~~~--------~V~v~~GGtl-----fe~~~~~~--------~~~~y~~~~k~lGf~~iEiS 104 (244)
T PF02679_consen 55 ILREKIDL--AHDH--------GVYVYTGGTL-----FEIAISQG--------KFDEYLRECKDLGFDAIEIS 104 (244)
T ss_dssp HHHHHHHH--HHCT--------T-EEE----H-----HHHHHHTT---------HHHHHHHHHH----EEEE-
T ss_pred HHHHHHHH--HHHC--------CCEEECCCHH-----HHHHHHCC--------HHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999--9986--------9817079549-----99998207--------49999999998599789975
No 29
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure . SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity . This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity; PDB: 2v4j_D 3c7b_D 5aop_A 6gep_A 1aop_A 2gep_A 3geo_A 4aop_A 7gep_A 8gep_A ....
Probab=32.09 E-value=9.7 Score=14.13 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3233443789999999986378
Q T0591 190 PAGVVYSAEEIGQIAALAARYG 211 (406)
Q Consensus 190 PTG~~~s~~~l~~i~~~a~~~~ 211 (406)
|.|.+ +.+.++.|++++++|+
T Consensus 17 ~~G~l-t~~~l~~la~ia~~yg 37 (69)
T PF03460_consen 17 PGGRL-TAEQLRKLADIAEKYG 37 (69)
T ss_dssp --SCB-EHHHHHHHHHHHHHHS
T ss_pred CCEEE-CHHHHHHHHHHHHHCC
T ss_conf 88898-9999999999999658
No 30
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=30.53 E-value=10 Score=13.92 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHHCCEEEEEEECCCCCCCCCCCCCHHHHH-----HHHC---CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 982996999860446667766677889999-----9850---25403421566643233443789999999986378757
Q T0591 143 EFFEGEMVPVQLDYVSADETRAGLDLTGLE-----EAFK---AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATV 214 (406)
Q Consensus 143 ~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~-----~~~~---~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~i 214 (406)
+.+|+++.||.....+..=++..++...|. +++. +..|-++| -|-|-|-..+=.+-+..|.++.++.|+-+
T Consensus 33 RNaGfKlAPVDtNLFPaGfNNL~~~~~plavqa~~~aiek~cp~a~~iLl-IpEnHTRN~fYl~nv~~L~~I~~~AG~~V 111 (404)
T PF08886_consen 33 RNAGFKLAPVDTNLFPAGFNNLNPEFLPLAVQAAMAAIEKICPEAKNILL-IPENHTRNTFYLENVAALKRILRQAGFNV 111 (404)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 24686216653556765103688678999999999999986825241899-32766621889999999999999759558
Q ss_pred EE
Q ss_conf 84
Q T0591 215 IA 216 (406)
Q Consensus 215 i~ 216 (406)
-+
T Consensus 112 ri 113 (404)
T PF08886_consen 112 RI 113 (404)
T ss_pred EE
T ss_conf 96
No 31
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. This domain is found in family 53 of the glycosyl hydrolase classification . These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 2gft_A 1r8l_B 2j74_A 1ur4_B 1ur0_A 2ccr_A 1hjq_A 1hju_A 1hjs_C 1fob_A ....
Probab=29.81 E-value=11 Score=13.84 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=25.5
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 64323-34437899999999863787578417502355
Q T0591 188 NNPAG-VVYSAEEIGQIAALAARYGATVIADQLYSRLR 224 (406)
Q Consensus 188 ~NPTG-~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~ 224 (406)
+||+. .....+...++++-|++.|.-|+.|-=|+++.
T Consensus 47 vnP~~~G~~dl~~~~~~AkrAk~~GmkvllDFHYSD~W 84 (332)
T PF07745_consen 47 VNPYDGGYNDLEDVLKLAKRAKAAGMKVLLDFHYSDFW 84 (332)
T ss_dssp SS-S-----SHHHHHHHHHHHHH---EEEEEE-SSSS-
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 77764455778999999999998699599976013467
No 32
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) . No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis
Probab=28.97 E-value=11 Score=13.75 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=37.6
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEC--CCC---CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 96999860446667766677889999985025403421--566---64323344378999999998637
Q T0591 147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF--SNP---NNPAGVVYSAEEIGQIAALAARY 210 (406)
Q Consensus 147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l--~~P---~NPTG~~~s~~~l~~i~~~a~~~ 210 (406)
.+++.||+. ..+|+.-+.+++..+...+++ |.| |+.+|..+...+...+-++..+-
T Consensus 29 vriIrVpC~--------GrV~~~~il~A~~~GADGV~v~GC~~gdChy~~Gn~~a~~Rv~~~~~~L~~~ 89 (124)
T PF02662_consen 29 VRIIRVPCS--------GRVDPSFILDAFEKGADGVLVAGCHPGDCHYLKGNYWARRRVARAKKLLEEL 89 (124)
T ss_pred EEEEECCCC--------CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 389971577--------7669999999998399989995889987817554699999999999999980
No 33
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins . These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homolog of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0016020 membrane; PDB: 2q9a_A 2q9c_B 2cnw_F 2q9b_B 2iyl_D 1rj9_A 1okk_D 2j7p_E 2px0_A 2px3_A ....
Probab=28.66 E-value=11 Score=13.71 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=22.6
Q ss_pred CCCEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 254034215666-43233443789999999986378757841750
Q T0591 177 AGARVFLFSNPN-NPAGVVYSAEEIGQIAALAARYGATVIADQLY 220 (406)
Q Consensus 177 ~~~k~i~l~~P~-NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y 220 (406)
.+...+++-+|. ||.-. --.++++++.+.+....++++.|-..
T Consensus 82 ~~~d~VLIDTaGr~~~~~-~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 82 RGFDLVLIDTAGRSPRDE-ELMEELRKLLRVIEPDEVLLVLSATT 125 (196)
T ss_dssp TTSSEEEEEE-S-GSTHH-HHHHHHHHHHHHHTTSEEEEEEETTB
T ss_pred CCCCEEEEECCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 799999996888775769-99999999841169987999963655
No 34
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 1o0y_A 1n7k_A 1to3_A 2qjh_T 2qji_N 2qjg_N 1w8r_D 1w8s_I 1ojx_J 1ok6_G ....
Probab=25.31 E-value=13 Score=13.32 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=30.7
Q ss_pred HHHHHHHHCCCCEEEE-CCCCC--CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 8999998502540342-15666--43233443789999999986378757841750
Q T0591 168 LTGLEEAFKAGARVFL-FSNPN--NPAGVVYSAEEIGQIAALAARYGATVIADQLY 220 (406)
Q Consensus 168 ~~~l~~~~~~~~k~i~-l~~P~--NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y 220 (406)
..+.+.+++.+...+- +.|+. .+--...-.+++.++.+.|+++++.+|.- .|
T Consensus 79 ~~~v~~A~~~GAdevd~v~~~~~~~s~~~~~~~~ei~~v~~~~~~~~l~vIlE-~~ 133 (236)
T PF01791_consen 79 VAEVEEAVRLGADEVDVVVNIGALGSGDEDEVLEEIAEVVEECRRWGLKVILE-GY 133 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHTTTTHHHHHHHHHHHHHHHHTSEEEEEEE-GG
T ss_pred HHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-EE
T ss_conf 89999999869986456646631167649999999999999985279889999-93
No 35
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes . ; PDB: 1ub0_A 2ddw_A 2ddo_B 2ddm_A 1vi9_C 1td2_B 3h74_A 3hyo_A 2i5b_A 2php_D ....
Probab=25.14 E-value=13 Score=13.30 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=5.0
Q ss_pred CHHHHHHHHHHH
Q ss_conf 988999999999
Q T0591 79 DLGIRDLLAPRL 90 (406)
Q Consensus 79 ~~~Lr~aia~~~ 90 (406)
..+.-+.|++|+
T Consensus 71 s~~~i~~v~~~l 82 (246)
T PF08543_consen 71 SAEQIEVVADFL 82 (246)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 879999999998
No 36
>PF12138 Spherulin4: Spherulation-specific family 4
Probab=22.27 E-value=15 Score=12.93 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHHHHCC--CCEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHCCCEEE
Q ss_conf 8999998502--54034215666432334----437899999999863787578
Q T0591 168 LTGLEEAFKA--GARVFLFSNPNNPAGVV----YSAEEIGQIAALAARYGATVI 215 (406)
Q Consensus 168 ~~~l~~~~~~--~~k~i~l~~P~NPTG~~----~s~~~l~~i~~~a~~~~~~ii 215 (406)
++.|..++.. .....+|.||+|=-|.. ....-.++|-++-+..|+.+|
T Consensus 18 W~~L~~~i~~~p~~~~~vIiNP~~GPG~~~~~~pd~~y~~ai~~L~~~~nv~vl 71 (251)
T PF12138_consen 18 WDPLYDAITAYPDVQFTVIINPNNGPGSSPEYLPDPNYTAAIPRLNRYANVRVL 71 (251)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 278887764289986899987898998666778877899998876315787069
No 37
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 3cea_A 3ec7_D 3euw_A 3ezy_B 3e18_A 2p2s_A 3dty_B 1tlt_B 1xea_D 3bio_A ....
Probab=20.81 E-value=16 Score=12.74 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEE
Q ss_conf 378999999998637875784
Q T0591 196 SAEEIGQIAALAARYGATVIA 216 (406)
Q Consensus 196 s~~~l~~i~~~a~~~~~~ii~ 216 (406)
+.++.++|++.+++++..+.+
T Consensus 98 ~~~e~~~l~~~a~~~~~~~~v 118 (120)
T PF01408_consen 98 SLEEAEELLEAAKKKGVIVMV 118 (120)
T ss_dssp SHHHHHHHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHHCCEEEE
T ss_conf 999999999999980997998
Done!