Query         T0591 YP_354942.1, , 406 residues
Match_columns 406
No_of_seqs    188 out of 8756
Neff          8.6 
Searched_HMMs 11830
Date          Mon Jul  5 09:21:53 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0591.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0591.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF00155 Aminotran_1_2:  Aminot 100.0       0       0  424.4  26.3  347   39-397     2-363 (363)
  2 PF04864 Alliinase_C:  Allinase  99.9 4.2E-26 3.6E-30  192.6  15.7  288   79-401    45-362 (362)
  3 PF00266 Aminotran_5:  Aminotra  99.9 1.6E-18 1.3E-22  141.3  28.2  314   53-392    11-370 (371)
  4 PF01053 Cys_Met_Meta_PP:  Cys/  99.8 8.9E-16 7.6E-20  122.7  28.0  284   71-394    47-381 (386)
  5 PF01041 DegT_DnrJ_EryC1:  DegT  99.8 1.6E-16 1.4E-20  127.7  21.9  278   54-369     4-310 (363)
  6 PF01276 OKR_DC_1:  Orn/Lys/Arg  99.7 1.6E-15 1.3E-19  121.0  19.9  241   75-334    63-329 (417)
  7 PF00464 SHMT:  Serine hydroxym  99.6 4.8E-13 4.1E-17  104.2  19.7  335   41-401    23-399 (399)
  8 PF01212 Beta_elim_lyase:  Beta  99.6 2.5E-15 2.1E-19  119.7   6.5  248   53-328     7-273 (290)
  9 PF00202 Aminotran_3:  Aminotra  99.3 1.8E-10 1.5E-14   86.8  17.6  247   39-299    17-292 (339)
 10 PF06838 Alum_res:  Aluminium r  99.3   2E-10 1.7E-14   86.4  15.1  175   83-276    56-247 (403)
 11 PF02347 GDC-P:  Glycine cleava  99.0 1.9E-08 1.6E-12   73.0  15.9  312   43-400    70-428 (429)
 12 PF00282 Pyridoxal_deC:  Pyrido  99.0 5.8E-08 4.9E-12   69.8  17.2  261   59-334    58-363 (373)
 13 PF03841 SelA:  L-seryl-tRNA se  98.7   8E-09 6.8E-13   75.6   4.4  253   54-325    19-296 (367)
 14 PF05889 SLA_LP_auto_ag:  Solub  98.4 5.7E-05 4.8E-09   49.5  18.0  295   88-402    64-389 (389)
 15 PF04321 RmlD_sub_bind:  RmlD s  80.1       1 8.8E-05   20.7   4.4  107  165-276    37-165 (286)
 16 PF00728 Glyco_hydro_20:  Glyco  76.0     1.7 0.00015   19.2   5.2   22  194-215    68-89  (350)
 17 PF04392 ABC_sub_bind:  ABC tra  69.8     1.5 0.00013   19.5   3.1  121   73-216    38-165 (294)
 18 PF00128 Alpha-amylase:  Alpha   62.8     2.7 0.00023   17.9   3.3   29  196-224    50-78  (316)
 19 PF05913 DUF871:  Bacterial pro  60.4     3.1 0.00026   17.5   3.2   20  195-214   153-172 (357)
 20 PF04002 DUF2466:  Protein of u  60.0     3.6 0.00031   17.0   3.6   49  165-215    50-104 (123)
 21 PF05114 DUF692:  Protein of un  59.4     3.7 0.00032   16.9   4.4   63  182-248   135-202 (274)
 22 PF03786 UxuA:  D-mannonate deh  56.5     2.4  0.0002   18.3   2.0   35  178-212    25-59  (351)
 23 PF04794 YdjC:  YdjC-like prote  45.9       6 0.00051   15.5   2.8   51  165-215    98-153 (261)
 24 PF11977 RNase_Zc3h12a:  Zc3h12  41.9     6.9 0.00059   15.1   5.7   91  110-225    23-116 (155)
 25 PF04016 DUF364:  Domain of unk  40.5     7.3 0.00061   15.0   5.3   86  122-215   109-194 (232)
 26 PF10609 ParA:  ParA/MinD ATPas  37.2     8.2 0.00069   14.6   2.8   34  177-215    24-57  (81)
 27 PF00150 Cellulase:  Cellulase   36.9     8.2  0.0007   14.6   4.7   11  144-154    37-47  (287)
 28 PF02679 ComA:  (2R)-phospho-3-  33.0     7.9 0.00066   14.7   1.7   50   81-153    55-104 (244)
 29 PF03460 NIR_SIR_ferr:  Nitrite  32.1     9.7 0.00082   14.1   2.0   21  190-211    17-37  (69)
 30 PF08886 GshA:  Glutamate-cyste  30.5      10 0.00088   13.9   6.4   73  143-216    33-113 (404)
 31 PF07745 Glyco_hydro_53:  Glyco  29.8      11  0.0009   13.8   4.0   37  188-224    47-84  (332)
 32 PF02662 FlpD:  Methyl-viologen  29.0      11 0.00093   13.7   5.2   56  147-210    29-89  (124)
 33 PF00448 SRP54:  SRP54-type pro  28.7      11 0.00094   13.7   2.1   43  177-220    82-125 (196)
 34 PF01791 DeoC:  DeoC/LacD famil  25.3      13  0.0011   13.3   3.7   52  168-220    79-133 (236)
 35 PF08543 Phos_pyr_kin:  Phospho  25.1      13  0.0011   13.3   2.9   12   79-90     71-82  (246)
 36 PF12138 Spherulin4:  Spherulat  22.3      15  0.0012   12.9   6.1   48  168-215    18-71  (251)
 37 PF01408 GFO_IDH_MocA:  Oxidore  20.8      16  0.0013   12.7   7.4   21  196-216    98-118 (120)

No 1  
>PF00155 Aminotran_1_2:  Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature;  InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped  into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 1u08_A 1v2f_A 1v2d_A 1v2e_B 2r5c_A 2r5e_B 1yiz_B 1yiy_A 3fvx_B 3fvs_B ....
Probab=100.00  E-value=0  Score=424.40  Aligned_cols=347  Identities=28%  Similarity=0.437  Sum_probs=301.6

Q ss_pred             CCEEECCCCCCCCC---CCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH
Q ss_conf             83341567867887---88899999999-998087888878888988999999999986488678867078824872789
Q T0591            39 RPVDFSHGDVDAHE---PTPGAFDLFSA-GVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL  114 (406)
Q Consensus        39 ~~i~ls~G~pd~~~---p~~~~~~~~~~-~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l  114 (406)
                      ..|||+.|+|+...   +.|.+.+++.+ ........+|++..|.++||+++++|+.+.+|++.+++.+|++|+|+++++
T Consensus         2 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~~i~~~~G~~~~~   81 (363)
T PF00155_consen    2 DVINLSSGDPLFDSQNPPLPEALKALLDGAADGSSILQYGPPQGYPELREALADFLGRRRGIPLDPDSNILITSGAQAAL   81 (363)
T ss_dssp             EEEBESSSSTSSTTTHHHHHHHHHHHHHHHHHHGGGTSS--TTHHHHHHHHHHHHHHHHHHHHTTGGEGEEEESHHHHHH
T ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEE
T ss_conf             76998598799744444659999999876554444254899421199999999978760597657762289616762233


Q ss_pred             HHHHHHH-HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC------CCEEEECCCC
Q ss_conf             9999999-72001010131055138999998299699986044666776667788999998502------5403421566
Q T0591           115 FLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNP  187 (406)
Q Consensus       115 ~~~~~~l-~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P  187 (406)
                      ..++.++ +++||.|++++|+|+.|...++..|.++++++++..    ++|++|++++++.+++      ++++++++||
T Consensus        82 ~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~----~~~~~d~~~l~~~l~~~~~~~~~~~~i~i~~p  157 (363)
T PF00155_consen   82 FLLFRLLKLDPGDVVLVPEPTYPSYIRIARLAGAEVVPVPLDSE----DDFGLDLDALEAALEEYRKRSPRPKAILIPNP  157 (363)
T ss_dssp             HHHHHHHHHTTTSEEEEEESSTTHHHHHHHHTTTEEEEEEBEET----TTTEETHHHHHHHHHTHHTTTETEEEEEEESS
T ss_pred             EHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             00021011356444555577554223101036846999950455----55576612133333222223455413521465


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHH
Q ss_conf             64323344378999999998637875784175023556888765223321026786899850400104631121143325
Q T0591           188 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS  267 (406)
Q Consensus       188 ~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~  267 (406)
                      |||||.+++.+++++|+++|++||++||+||+|+++.+++..+.+..... ....++|+++||||.|++||+|+||++++
T Consensus       158 ~NPtG~~~s~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlR~G~v~~~  236 (363)
T PF00155_consen  158 HNPTGSVLSAEELRELAELARKYNVLLIEDEAYSDLVYGDPDFYSILSLL-DEGPNVIVLGSFSKALGLPGLRVGFVVAP  236 (363)
T ss_dssp             -STT-B---HHHHHHHHHHHHHTTSEEEEEETTTTGSSSSSHTHHHGGGH-HTTTTEEEEEESTTTTTBGGGT-EEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCCCHHC
T ss_conf             45631455477655588763022023430441355543897777542235-78841899413322333343466640013


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECC
Q ss_conf             8999999987520367612457999999985652---5899999999999999999997279945535887307877668
Q T0591           268 RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP  344 (406)
Q Consensus       268 ~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~gg~~~w~~~~  344 (406)
                      +++++.++.++.....  +++.|.++..++.+..   .++.++++.++++++.+.+.|++. ++.+..+++|+|+|+++.
T Consensus       237 ~~~~~~l~~~~~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~  313 (363)
T PF00155_consen  237 PELIAALRKLSRPWII--SSPLQQAAAAALADPQFYDRHLRELRRRLRERRDRLREALEEL-GISVLPPPGGFFLWLDLD  313 (363)
T ss_dssp             HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSEEEHHSSSEEEEEEET
T ss_pred             HHHHHHHHHHCCCCCC--CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCEEEEEECC
T ss_conf             4666544300012232--0245789987532543222110025678878999999877620-624303688528999656


Q ss_pred             CCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE-CCCHHHHHHHHHHH
Q ss_conf             878898999999998689189616102679998589985-09979999999999
Q T0591           345 KLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF-SQDHEAAVAAARRI  397 (406)
Q Consensus       345 ~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~-~~~~e~l~~al~rl  397 (406)
                      ..  ++.+|++.|++++||.++||+.|+.  ++|+|+++ ..++++++++++||
T Consensus       314 ~~--~~~~~~~~L~~~~gi~v~~g~~f~~--~~~iRi~~a~~~~~~~~~~~~~l  363 (363)
T PF00155_consen  314 PL--DAMELAQKLLEEHGILVVPGSYFGV--PGFIRISLAGLTPEEIEEAVERL  363 (363)
T ss_dssp             HH--HHHHHHHHHHHHHTEEEBEGGTTSS--TTEEEEESSSSHHHHHHHHHHHH
T ss_pred             CC--HHHHHHHHHHHHCCEEEEECCCCCC--CCEEEEEEEECCHHHHHHHHCCC
T ss_conf             51--6999999999849999983777899--99899996109999999983469


No 2  
>PF04864 Alliinase_C:  Allinase;  InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system .; GO: 0016846 carbon-sulfur lyase activity; PDB: 2hor_A 2hox_C 1lk9_A 3bwo_E 3bwn_B.
Probab=99.94  E-value=4.2e-26  Score=192.58  Aligned_cols=288  Identities=18%  Similarity=0.219  Sum_probs=207.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC--C----HHHHHHHCCCHHHHHHHHHHCCEEEEE
Q ss_conf             9889999999999864886788670788248727899999999720--0----101013105513899999829969998
Q T0591            79 DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVAR--G----DKVAIVQPDYFANRKLVEFFEGEMVPV  152 (406)
Q Consensus        79 ~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~p--G----d~Vl~~~P~y~~~~~~~~~~g~~~v~v  152 (406)
                      .++|-+.|. .|++.-|-.++-...|++++|+||.++.++.+|..+  .    -.|+...|+|+.|..+...+..     
T Consensus        45 s~eLe~~Ir-~LH~~VGNAvtdgr~IV~GtGsTQL~~AavyALSp~~~~~~~p~~VVa~aPyY~~y~~qT~~~~s-----  118 (362)
T PF04864_consen   45 SPELERHIR-RLHRVVGNAVTDGRYIVFGTGSTQLLNAAVYALSPPATNSSPPASVVAAAPYYSVYKEQTDFFDS-----  118 (362)
T ss_dssp             -HHHHHHHH-HHHHH---B--TTSEEE-----HHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-B-----
T ss_pred             CHHHHHHHH-HHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCC-----
T ss_conf             699999999-99987345201673799927799999999997088878889963157448867432888876146-----


Q ss_pred             EECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             60446667766677889999985025403421566643233443789999999986378757841750235568887652
Q T0591           153 QLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH  232 (406)
Q Consensus       153 ~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~  232 (406)
                             ..-.|.-|.......-+..+-+-++|+||||.|..     ++.++   +..+..+|.|-+|.+     +.+++
T Consensus       119 -------~~y~w~Gda~~~~~~~~~~~~IElVTSPNNPDG~l-----r~aV~---~g~~~k~I~D~AYYW-----PhyTp  178 (362)
T PF04864_consen  119 -------GLYKWAGDASTFVNSDTPGPYIELVTSPNNPDGQL-----REAVL---NGSSGKAIHDLAYYW-----PHYTP  178 (362)
T ss_dssp             ---------EEE---GGGGTT-S-GGGEEEEEESS-S-------------S-----TTEEEEEEE-TT-S-----TTTS-
T ss_pred             -------CCCEECCCHHHHCCCCCCCCEEEEEECCCCCCCCH-----HHHHC---CCCCCCEEEEEEEEC-----CCCCC
T ss_conf             -------68334257899657899887389983899985102-----14540---699753143200005-----55566


Q ss_pred             HHHHHCCCCCCEEEEEECCHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---------CH
Q ss_conf             23321026786899850400104631121143-325899999998752036761245799999998565---------25
Q T0591           233 LRAEAAVDAENVVTIMGPSKTESLSGYRLGVA-FGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---------PG  302 (406)
Q Consensus       233 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~-~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---------~~  302 (406)
                      +...+..|    |.++|+||.-|.+|-|+||. +-++++.++|..+....+.++|.-+|.-++.+|..-         ..
T Consensus       179 I~~~aD~D----iMLFTlSK~TGHAGsR~GWAlVKD~~Va~km~~y~~lnt~GvS~dsQLRa~kiLk~v~~~~~~~~g~~  254 (362)
T PF04864_consen  179 ITAPADHD----IMLFTLSKLTGHAGSRFGWALVKDEEVAKKMLKYMELNTIGVSRDSQLRALKILKVVLDGYKTNPGTE  254 (362)
T ss_dssp             --S-B--S----EEE--HHHH----------EEES-HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHCCHHSTTT
T ss_pred             CCCCCCCC----EEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             57766675----58999731357664511046762399999999999761555768899999999999985116788624


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEE--------------ECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf             8999999999999999999972799455--------------35887307877668878898999999998689189616
Q T0591           303 WMEDRIARHQAIRDELLHVLRGCEGVFA--------------RTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPG  368 (406)
Q Consensus       303 ~~~~~~~~~~~~r~~l~~~L~~~~g~~~--------------~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG  368 (406)
                      ..+--++.+++|...|.+.+..-..++.              ..|+. -|.|+++......   -|...++++||....|
T Consensus       255 ~F~fg~~~m~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psP-afaWlkCe~eed~---DC~~~L~~~~Iitr~G  330 (362)
T PF04864_consen  255 IFEFGYEVMRERWERLRAAVSNSDRFSLQEIPPQYCNFFGKVREPSP-AFAWLKCEWEEDE---DCYAVLREAKIITRSG  330 (362)
T ss_dssp             TTT---HHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTEEEE----SEEEEEE-SCGGS---SHHHHHHTTTEEEB--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHCHHCCCCCCCCC-CEEEEECCCCCCH---HHHHHHHHCCCCCCCC
T ss_conf             78999999999999999999637847558788221200053148998-7688863864410---5999998688105788


Q ss_pred             CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             102679998589985099799999999999999
Q T0591           369 TEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV  401 (406)
Q Consensus       369 ~~Fg~~~~~~iRis~~~~~e~l~~al~rl~~~~  401 (406)
                      ..||.+ +.|+|+|+...+++++.-++||.+++
T Consensus       331 ~~Fga~-~ryvRlSll~~~d~Fd~l~~rL~~lv  362 (362)
T PF04864_consen  331 VLFGAD-SRYVRLSLLKRQDDFDQLLERLSKLV  362 (362)
T ss_dssp             ----S--TTEEEEESSS-HHHHHHHHHHHHCCH
T ss_pred             CCCCCC-CCEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             744888-75699871576756999999998449


No 3  
>PF00266 Aminotran_5:  Aminotransferase class-V;  InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped  into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulphurases.; GO: 0008483 transaminase activity, 0008152 metabolic process; PDB: 2hzp_A 3e9k_A 1qz9_A 1n2t_B 1elu_A 1n31_A 1elq_B 2bkw_A 2yrr_B 2yri_A ....
Probab=99.86  E-value=1.6e-18  Score=141.30  Aligned_cols=314  Identities=22%  Similarity=0.243  Sum_probs=207.3

Q ss_pred             CCHHHHHHHHHHHHCCCCCC----CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH---HHCC
Q ss_conf             88899999999998087888----8788889889999999999864886788670788248727899999999---7200
Q T0591            53 PTPGAFDLFSAGVQSGGVQA----YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT---VARG  125 (406)
Q Consensus        53 p~~~~~~~~~~~~~~~~~~~----Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l---~~pG  125 (406)
                      +++.+++++.+.+.......    +....-..++.+.+.+.+.+..|.+.  .++|++|+|+++++..++..+   +.+|
T Consensus        11 ~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~la~ll~~~~--~~~i~f~~~~t~~~~~~~~~l~~~~~~g   88 (371)
T PF00266_consen   11 LPPSVLEAISEYLEEFFGNPHSSIHHRSQEFQEIVEEAREKLARLLGAPP--PEEIAFTSNTTEALNAVLRSLRRNLKPG   88 (371)
T ss_dssp             -BHHHHHHHHHHHHSTTTCTTTCSCTTSHHHHHHHHHHHHHHHHHHTSSG--TGEEEEESSHHHHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf             97999999999998762487665675339999999999999999719985--3332322466554323300011344554


Q ss_pred             HHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Q ss_conf             10101310551389999----98299699986044666776667788999998502540342156664323344378999
Q T0591           126 DKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIG  201 (406)
Q Consensus       126 d~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~  201 (406)
                      |+|++..-.|++....+    +..|.++..++.+.      +..+|+++++++++++++++.++.-+|-||..++   ++
T Consensus        89 ~~il~~~~e~~s~~~~~~~~~~~~g~~v~~~~~~~------~~~~~~~~l~~~i~~~~~lv~~s~~~~~tG~~~p---i~  159 (371)
T PF00266_consen   89 DEILVTNNEHPSNRLPWEELAERKGAEVREIPVDP------GGEVDLEELEEAIDPRTRLVSISHVETSTGVRNP---IE  159 (371)
T ss_dssp             SEEEEECTSHHHHHHHHHHHHHHCCEEEEEEEBGT------TSSBSHHHHHHHHHTTEEEEEEESBETTTTEBSS---HH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC------CCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEC---HH
T ss_conf             21022233562046799875430530269941333------2101146677763468626986226777758830---58


Q ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999863787578417502355688876522332102678689985040010463112114332589999999875203
Q T0591           202 QIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIV  281 (406)
Q Consensus       202 ~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~  281 (406)
                      +|.++|+++|+++++|-+++.    |..+..+...   ..+  +++.|.-|.+|.+|  +|+++..++.++.+.......
T Consensus       160 ~i~~~~~~~g~~~~vD~~~~~----g~~~id~~~~---~~D--~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~~~~~~~  228 (371)
T PF00266_consen  160 EIAALAREYGALVVVDAAQSA----GAIPIDLDEL---GVD--FLVFSSHKLFGPPG--LGFLYVSPRAIEKLEPPFPGW  228 (371)
T ss_dssp             HHHHHHHHTTSEEEEE-TTTT----TSS---TTTT---TES--EEEEESTSTTS------EEEEEEHHHHHHHHSSTCSS
T ss_pred             HHHHHHHCCCCEEEEECCCCC----CCCCCCCCCC---CCC--EEEECCCCCCCCCC--HHHHHCCHHHHHCCCCCCCCC
T ss_conf             865666206976998313566----6555555533---224--68755877778973--778770598772248745788


Q ss_pred             --------------------CCCH-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC-----C
Q ss_conf             --------------------6761-245799999998565-258999999999999999999972799455358-----8
Q T0591           282 --------------------SLRA-AGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFARTP-----Q  334 (406)
Q Consensus       282 --------------------~~~~-~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-----~  334 (406)
                                          ..++ +.+...++...++.. +.-++...++.++..+.+.+.|.+++++.+..|     .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~f~~GT~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~  308 (371)
T PF00266_consen  229 GYVDDPSLQEYGFKDDAQRFEPGTPNVPSIYALGEALKLLQEGGLEAIRERIRELAQYLREALEEIGGVRLLGPDDEPRS  308 (371)
T ss_dssp             CTTTHTHHHHHHHHHTTGGSSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCSGGGGG
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             75556435442023564222355520578999999999987630478999999999999999986786699435334455


Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCC------CCCCCEEEEEEC--CCHHHHHH
Q ss_conf             73078776688788989999999986891896161026------799985899850--99799999
Q T0591           335 AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS------PHTADSVRLNFS--QDHEAAVA  392 (406)
Q Consensus       335 gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg------~~~~~~iRis~~--~~~e~l~~  392 (406)
                      ++. +-+.++  +.+..++...|.++ ||.+..|..+.      ....+.+|+|+.  +++++++.
T Consensus       309 ~~i-v~~~~~--~~~~~~~~~~L~~~-gI~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dvd~  370 (371)
T PF00266_consen  309 PSI-VSFNLP--GIDAEDLVKALKER-GIIISAGSACAGPSLRLLGLGGVIRVSLHYYNTEEDVDR  370 (371)
T ss_dssp             TTS-EEEEET--TSSHHHHHHHHHHH-HEBEBETTTTCHHHHHHTTTTTEEEEE--TTSSHHHHHH
T ss_pred             CCE-EEEEEC--CCCHHHHHHHHHCC-CCEEECCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf             654-899964--56899999998528-981754664042788870799889985888899999953


No 4  
>PF01053 Cys_Met_Meta_PP:  Cys/Met metabolism PLP-dependent enzyme;  InterPro: IPR000277    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown ,  to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 amino acid metabolic process; PDB: 1pff_B 1e5f_A 1e5e_A 1gc0_B 1gc2_C 1ukj_C 1pg8_D 2o7c_B 1y4i_A 2rfv_A ....
Probab=99.79  E-value=8.9e-16  Score=122.69  Aligned_cols=284  Identities=22%  Similarity=0.254  Sum_probs=180.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH----HC
Q ss_conf             88878888988999999999986488678867078824872789999999972001010131055138999998----29
Q T0591            71 QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF----FE  146 (406)
Q Consensus        71 ~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~----~g  146 (406)
                      +.|+- .|.|.. +++.+.+....|.     +..++++.+..|+..++.+++.+||+|+++...|......++.    .|
T Consensus        47 ~~Y~R-~gnPt~-~~le~~la~LEg~-----~~a~~~sSGmaAi~~~~~~ll~~Gd~vv~~~~~Yg~t~~~l~~~~~~~g  119 (386)
T PF01053_consen   47 YIYSR-YGNPTV-RALEERLAALEGG-----EAALLFSSGMAAITAALLALLRPGDHVVASDDLYGGTRRLLREFLPRFG  119 (386)
T ss_dssp             -SBTT-TB-HHH-HHHHHHHHHHHT------SEEE-B----HHHHHHHHHHS----EEEEESSS-HHHHHHHHHCHHH--
T ss_pred             CCEEC-CCCCHH-HHHHHHHHHHHCC-----CCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCC
T ss_conf             72408-999315-7999999998576-----5348863608999999997478999799957754317676563366788


Q ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCCCCC
Q ss_conf             96999860446667766677889999985025403421566643233443789999999986378-75784175023556
Q T0591           147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLRY  225 (406)
Q Consensus       147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~-~~ii~De~Y~~l~~  225 (406)
                      .++..+.           .-|+++++++++++|++|++-+|.||+-.+.   ++++|+++|+++| +++++|+.+.--.+
T Consensus       120 v~v~~~d-----------~~d~~~~~~~i~~~t~~v~~EspsNP~l~v~---Di~~i~~~a~~~g~~~vvVDnT~atp~~  185 (386)
T PF01053_consen  120 VEVTFVD-----------PSDLDALEAAIDPNTKLVFLESPSNPTLEVP---DIEAIAEIAHEHGDILVVVDNTFATPVL  185 (386)
T ss_dssp             -EEEEES-----------TTSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHHST-EEEEEGTTTHTTT
T ss_pred             EEEEEEC-----------CCCHHHHHHHHCCCCCEEEEECCCCCCCCCC---CHHHHHHHHHHHCCEEEEEECCCCCCCE
T ss_conf             5999968-----------8688999998535775899987887775246---7899999999859749998064227605


Q ss_pred             CCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCC-CCCHHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf             888765223321026786899850400104631-12114332--589999999875203676124579999999856525
Q T0591           226 AGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFG--SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG  302 (406)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~~~--~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~  302 (406)
                          ..++.      ..--|+++|.||.++-.| .=.|.++.  +.++.+++...........+...   +..++ .+-+
T Consensus       186 ----~~Pl~------~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~~G~~l~p~d---a~ll~-rgl~  251 (386)
T PF01053_consen  186 ----QRPLE------LGADIVVHSATKYLSGHSDVMGGAVVTNGSEELIERLRFLRRLLGATLSPFD---AWLLL-RGLR  251 (386)
T ss_dssp             ----S-GGG----------EEEEETTTTT----S--E-EEEESHHHHHHHHHHHHHHH---B--HHH---HHHHH----T
T ss_pred             ----ECCCC------CCCCEEEEECCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHH---HHHHH-HCCC
T ss_conf             ----03665------6782899847677238877435999988717889887777875388878799---99998-0589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCE-EECCC-----------------CCEEEEEECCCCCCCHHHHHHHHHHHCCEE
Q ss_conf             899999999999999999997279945-53588-----------------730787766887889899999999868918
Q T0591           303 WMEDRIARHQAIRDELLHVLRGCEGVF-ARTPQ-----------------AGSYLFPRLPKLAVAPAEFVKILRLQAGVV  364 (406)
Q Consensus       303 ~~~~~~~~~~~~r~~l~~~L~~~~g~~-~~~p~-----------------gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~  364 (406)
                      -+.-+.++..++...+.+.|.+.+.+. +..|.                 ||+ +.+.+..    ..+-+.++++.-.+.
T Consensus       252 TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~-~sf~l~~----~~~~~~~f~~~l~l~  326 (386)
T PF01053_consen  252 TLALRMERHNENALALAEFLEAHPKVKRVNYPGLPSHPQHELAKRQMTGGGGM-LSFELKG----GEEAARRFIDALKLF  326 (386)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSGG--E-EEEEESS----HHHHHHHHHHC-SSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCCE-EEEEECC----CHHHHHHHHHHCCCE
T ss_conf             89999999999999999998517998889974778871588886023688833-8999288----479999999843540


Q ss_pred             -------------EEECCC----CC-------CCCCCEEEEEECC-CHHHHHHHH
Q ss_conf             -------------961610----26-------7999858998509-979999999
Q T0591           365 -------------VTPGTE----FS-------PHTADSVRLNFSQ-DHEAAVAAA  394 (406)
Q Consensus       365 -------------v~pG~~----Fg-------~~~~~~iRis~~~-~~e~l~~al  394 (406)
                                   ..|.+.    +.       .-.++.||+|++. +.|+|.+-+
T Consensus       327 ~~~~slGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~lvRlsvGlEd~~DLi~Dl  381 (386)
T PF01053_consen  327 KIAVSLGGVESLISHPASTTHRSMPEEERAAAGIPDGLVRLSVGLEDPEDLIADL  381 (386)
T ss_dssp             EESS-----S-EEEETTTTTTTTSCHHHHHH----TTEEEEE-----HHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             5864678777455577523231299989975699999599994579999999999


No 5  
>PF01041 DegT_DnrJ_EryC1:  DegT/DnrJ/EryC1/StrS aminotransferase family;  InterPro: IPR000653 The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS . The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin .; PDB: 3gr9_D 3b8x_A 2gms_B 2gmu_B 2r0t_A 3bb8_B 3bcx_A 3dr7_C 3dr4_B 3bn1_C ....
Probab=99.77  E-value=1.6e-16  Score=127.69  Aligned_cols=278  Identities=19%  Similarity=0.207  Sum_probs=183.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCHHHHHHH
Q ss_conf             88999999999980878888788889889999999999864886788670788248727899999999-72001010131
Q T0591            54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQ  132 (406)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l-~~pGd~Vl~~~  132 (406)
                      ..+..+++.+.+.++....|++.  ..++-+.+++|    +|.     ..++.++.+|.||.+++.++ +.|||+|++|.
T Consensus         4 ~~~~~~~v~~vl~sg~~~~~g~~--~~~fE~~~a~~----~g~-----~~av~~~sgt~AL~~al~al~~~~gdeVi~p~   72 (363)
T PF01041_consen    4 TEEELEAVLEVLRSGWLTNYGPE--VREFEKEFAEY----FGV-----KYAVAVSSGTSALHLALRALGVGPGDEVIVPA   72 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCB----H--HHHHHHHHHHH----CTS-----SEEE-BSSCHHHHHHHHHH-S-BTT-EEEEES
T ss_pred             CHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHH----HCC-----CEEEEECCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             89999999999980996269989--99999999998----497-----96999679999999999984178999899788


Q ss_pred             CCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             05513899999829969998604466677666778899999850254034215666432334437899999999863787
Q T0591           133 PDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA  212 (406)
Q Consensus       133 P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~  212 (406)
                      -+|......+...|++++.+.++     .+.+.+|++.++++++++||+|++++.   -|...   ++++|.++|++||+
T Consensus        73 ~t~~at~~ai~~~G~~pv~~Dvd-----~~t~~~d~~~~~~~i~~~t~aii~vh~---~G~~~---d~~~i~~~~~~~~i  141 (363)
T PF01041_consen   73 FTFPATASAILQAGAKPVFVDVD-----PDTLNIDPEALEKAITPKTKAIIPVHL---FGQPA---DMDEIREIARKHGI  141 (363)
T ss_dssp             SS-THHHHHHHHTT-EEEEE-BE-----TTTSSB-HHHHHHHHHTTEEEEEEE--------------HHHHHHHHHHCT-
T ss_pred             CCCHHHHHHHHHCCCEEEEEECC-----CCCCCCCHHHHHHHHHCCCEEEEEECC---CCCCC---CHHHHHHHHHHHCC
T ss_conf             65577799999829989998269-----898983999999762169879999888---67814---89999999999599


Q ss_pred             EEEECCCCCCC-CCCCCCCCCHHHHHCCCCCCEEEEEEC--CHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHCC------
Q ss_conf             57841750235-568887652233210267868998504--0010463112114332-5899999998752036------
Q T0591           213 TVIADQLYSRL-RYAGASYTHLRAEAAVDAENVVTIMGP--SKTESLSGYRLGVAFG-SRAIIARMEKLQAIVS------  282 (406)
Q Consensus       213 ~ii~De~Y~~l-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~GlRiG~~~~-~~~~i~~l~~~~~~~~------  282 (406)
                      +||+|-+.+.- .|.|...-++       .+  +.++||  +|.+...  --|.++. ++++.++++.++.+-.      
T Consensus       142 ~vIEDaa~a~g~~~~g~~~G~~-------gd--~~~fSF~~~K~i~~g--eGG~v~t~d~~~~~~~~~lr~~G~~~~~~~  210 (363)
T PF01041_consen  142 PVIEDAAQALGATYKGKKVGTF-------GD--AGVFSFHPTKNITTG--EGGAVVTNDEELAERARSLRNHGRSRDSFD  210 (363)
T ss_dssp             EEEEE-TT----EETTEB-----------SS--BEE---STTSSS-S-------EEES-HHHHHHHHHHCBTCEETSSSS
T ss_pred             EEEECCCCCCCCEECCEECCCC-------CC--EEEEECCCCCCCEEC--CCCCEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9987175765672599755688-------88--899968998766106--998065374999998657774587656665


Q ss_pred             -----------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCE-EEE----EECCC
Q ss_conf             -----------761245799999998565258999999999999999999972799455-3588730-787----76688
Q T0591           283 -----------LRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA-RTPQAGS-YLF----PRLPK  345 (406)
Q Consensus       283 -----------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~gg~-~~w----~~~~~  345 (406)
                                 ...+.+ |.+  -.+.+ -+.+.+..++.+++.+.+.+.|.+++++.. ..|.+.. ..|    +.+++
T Consensus       211 ~~~~~~~~G~n~rm~~~-~AA--ig~~Q-L~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  286 (363)
T PF01041_consen  211 RYEHELPIGYNYRMSEL-QAA--IGLAQ-LKRLDEIIARRRENAERYREALADLPGLRPLPIPPGNSEHSYHRYPIRLPE  286 (363)
T ss_dssp             TTB-S-S---B-B-BHH-HHH--HHHHH-HHCHHHHHHHHHHHHHHHHHHHTTGSSEEEEGCGTTTEEEEESSEEEEETT
T ss_pred             CEEEEECCCCCCCCCHH-HHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf             23321058655676689-999--99999-999999999999999999998558999656777888765212799999545


Q ss_pred             C-CCCHHHHHHHHHHHCCEEEEECC
Q ss_conf             7-88989999999986891896161
Q T0591           346 L-AVAPAEFVKILRLQAGVVVTPGT  369 (406)
Q Consensus       346 ~-~~~~~~~~~~Ll~~~gV~v~pG~  369 (406)
                      . ..+..++.+.| .+.||-+.+..
T Consensus       287 ~~~~~Rd~l~~~L-~~~GI~t~~~y  310 (363)
T PF01041_consen  287 EALADRDELIEAL-RARGIETRVHY  310 (363)
T ss_dssp             TCHHCHHHHHHHH-HHTTEB-BSST
T ss_pred             CCHHHHHHHHHHH-HHCCCCEECCC
T ss_conf             3225799999999-98799634115


No 6  
>PF01276 OKR_DC_1:  Orn/Lys/Arg decarboxylase, major domain;  InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates . One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 2vyc_G 1ord_A 1c4k_A.
Probab=99.71  E-value=1.6e-15  Score=121.03  Aligned_cols=241  Identities=18%  Similarity=0.222  Sum_probs=149.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEE
Q ss_conf             88889889999999999864886788670788248727899999999720010101310551389999982996999860
Q T0591            75 EYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL  154 (406)
Q Consensus        75 ~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~  154 (406)
                      ...|...=   .-+...+.||.+    .-.+++||+|.++..++++++.|||.|+++..++-+....+.+.|++++++..
T Consensus        63 ~p~G~I~e---aq~~aA~~fgad----~t~f~vnGsT~~n~a~i~a~~~~gd~vLv~RN~HKSv~~alil~ga~Pvyl~p  135 (417)
T PF01276_consen   63 DPEGIIKE---AQELAARAFGAD----RTYFLVNGSTGGNQAMIMALCRPGDKVLVDRNCHKSVYHALILSGAKPVYLYP  135 (417)
T ss_dssp             TT---HHH---HHHHHHHHHT-S----EEEEE----HHHHHHHHHHH--TT-EEEEETT--HHHHHHTTT---EEEEE--
T ss_pred             CCCCHHHH---HHHHHHHHCCCC----CEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEECC
T ss_conf             88719999---999999863998----37999578218999999984289998997076489999999987997899437


Q ss_pred             CCCCCCCCCCCCCH-----HHHHHHHCC--CCEE---EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CC
Q ss_conf             44666776667788-----999998502--5403---4215666432334437899999999863787578417502-35
Q T0591           155 DYVSADETRAGLDL-----TGLEEAFKA--GARV---FLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RL  223 (406)
Q Consensus       155 ~~~~~~~~~~~~d~-----~~l~~~~~~--~~k~---i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l  223 (406)
                      . .....--.++++     +.++++++.  ..|+   ++|+||+- -|.++.   +++|+++|+++++.|++|||++ ++
T Consensus       136 ~-~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~ka~~~vvlt~pTY-~G~~~d---~~~i~~~~h~~~~~llvDEAhGah~  210 (417)
T PF01276_consen  136 E-RNEYGIIGGIPPSEFTPESIEKALAEHPDAKAPRAVVLTSPTY-DGVCYD---LKEIADICHKYGIPLLVDEAHGAHF  210 (417)
T ss_dssp             -------------GGGCSHHHHHHHHHHGCCCHCECEEEEESS------EE----HHHHHHHHTTTECEEEEE-TT---C
T ss_pred             C-CCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC-CEEEEC---HHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             8-6678860477836437999999998486435831899977986-637408---9999999854599599978576765


Q ss_pred             CCCCCCCCCHHHHHCC--CCCCEEEEEECCHHCCCCCCCCH-HHHH-------HHHHHHHHHHHHHHCCCCHHHHH---H
Q ss_conf             5688876522332102--67868998504001046311211-4332-------58999999987520367612457---9
Q T0591           224 RYAGASYTHLRAEAAV--DAENVVTIMGPSKTESLSGYRLG-VAFG-------SRAIIARMEKLQAIVSLRAAGYS---Q  290 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~GlRiG-~~~~-------~~~~i~~l~~~~~~~~~~~~~~~---q  290 (406)
                      .|..-+.+.+ ...++  +...++++.|..|++  |++.=+ ++-.       .+.+-+.+..++   +.++|.+.   .
T Consensus       211 ~F~~lp~~a~-~~gaD~~~~~~~~vvqS~HKtL--~alTQ~S~LH~~~~~~vd~~~~~~al~~~q---TTSPSY~LmASL  284 (417)
T PF01276_consen  211 RFHPLPKSAL-AMGADDPEDPAILVVQSTHKTL--PALTQASMLHVKGDRIVDHERVNEALMMLQ---TTSPSYLLMASL  284 (417)
T ss_dssp             CCSGGGCCCS-STT-------EEEEEEEHHHHS--S--TT-EEEEEE-GGG--HHHHHHHHHHCS----SS--CHHHHHH
T ss_pred             CCCCCCCCHH-HCCCCCCCCCCEEEEEEHHHCC--CCCCHHEEEEECCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_conf             5386754775-6479655676326886221125--674600377877997777999999999875---888389999999


Q ss_pred             HHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             9999998--5652589999999999999999999727994553588
Q T0591           291 AVLRGWF--DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ  334 (406)
Q Consensus       291 ~a~~~~l--~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~  334 (406)
                      .++..++  ..+.+.+++..+....-|+.+.+ ++++.++++..|+
T Consensus       285 D~A~~~m~~~~G~~l~~~~i~~a~~~R~~l~~-~~~~~~f~~~~~e  329 (417)
T PF01276_consen  285 DVARAMMEAEEGRELLEEAIELAIDFRKKLAR-LNDIWGFKPWGPE  329 (417)
T ss_dssp             HHHHHHH------HHHHHHHHHHHHHHHHHHH-HH----SEESS-S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCHH
T ss_conf             99999975045199999999999999997513-3568867747853


No 7  
>PF00464 SHMT:  Serine hydroxymethyltransferase;  InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase   Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) . The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme . The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer , . PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) , .   In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3ecd_D 2dkj_A 2a7v_A 1bj4_A 1eji_C 1rv3_A 1ls3_C 1cj0_B 1rvu_A 1rvy_A ....
Probab=99.57  E-value=4.8e-13  Score=104.20  Aligned_cols=335  Identities=17%  Similarity=0.155  Sum_probs=195.8

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCCH--HHHHHHH-HHHHHHCCCCCC-CCCEEEEECCCCHH
Q ss_conf             341567867887888999999999980878888788---8898--8999999-999986488678-86707882487278
Q T0591            41 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RGDL--GIRDLLA-PRLAAFTGAPVD-ARDGLIITPGTQGA  113 (406)
Q Consensus        41 i~ls~G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~---~G~~--~Lr~aia-~~~~~~~g~~~~-~~~~I~it~G~~~~  113 (406)
                      |+|-..+   ...+|.+.+++...+...-..+|+-.   .|..  +..|.+| ++.++.+|.+-+ +--+|=.-+| +++
T Consensus        23 l~LIASE---N~~S~~v~~algS~ltnkYaeG~pg~ryy~G~~~vD~iE~la~~ra~~lF~a~~~~w~anVqp~SG-s~A   98 (399)
T PF00464_consen   23 LNLIASE---NFTSPAVLEALGSDLTNKYAEGYPGKRYYGGCEYVDEIEELAIERAKKLFGAEPKEWYANVQPHSG-SQA   98 (399)
T ss_dssp             EB--TT--------HHHHHH---GGGGS--------------HHHHHHHHHHHHHHHHHTT--TTT-EEE--------HH
T ss_pred             EEEECCC---CCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-HHH
T ss_conf             6575575---658999999863713044778889867768877499999999999999859985455378845875-899


Q ss_pred             HHHHHHHHHHCCHHHHHHHCCCHHHHHHH----------HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC-CCCEEE
Q ss_conf             99999999720010101310551389999----------9829969998604466677666778899999850-254034
Q T0591           114 LFLAVAATVARGDKVAIVQPDYFANRKLV----------EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVF  182 (406)
Q Consensus       114 l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~----------~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~-~~~k~i  182 (406)
                      ...++.+|++|||+|+..++...+|..--          ....++.++++++     .+...+|.|++++..+ .++|+|
T Consensus        99 n~av~~ALl~pgD~im~l~l~~GGHlthg~~~~~~k~~~~g~~~~~~~Y~~d-----~~~~~IDyd~l~~~a~~~kPklI  173 (399)
T PF00464_consen   99 NLAVYFALLKPGDRIMGLSLPHGGHLTHGYKVNFKKVSASGKFYESVPYGVD-----PETGLIDYDELEKLAKEFKPKLI  173 (399)
T ss_dssp             HHHHHHHHT-S-EEEE---TT----TT---TTSSSBSSHHHHHSEE----B------TTTSSB-HHHHHHHHHHH--SEE
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC-----CCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             9999999753478389536556877676766665323443543799986524-----66796679999999987699999


Q ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCC
Q ss_conf             215666432334437899999999863787578417502-3556888765223321026786899850400104631121
Q T0591           183 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL  261 (406)
Q Consensus       183 ~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi  261 (406)
                      ++-.-+.|  .   .-+.+++.++|.+.|.+++.|-++- .|+-.|.-+.++. .  .|    |+..|..|+|  +|-|-
T Consensus       174 i~G~S~y~--r---~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~p~P~~-~--AD----vVt~tTHKTl--rGPrg  239 (399)
T PF00464_consen  174 ICGASAYP--R---PIDFKRFREIADEVGAYLMADIAHIAGLIAGGLFPSPLP-Y--AD----VVTTTTHKTL--RGPRG  239 (399)
T ss_dssp             EE--TS-S--S------HHHHHHHHHHTT-EEEEE-TTT---TTTTSS--GTT-T--SS----EEE--SSGGG-------
T ss_pred             EECCHHCC--C---CCCHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCCCCCC-C--CC----EEECCCCCCC--CCCCE
T ss_conf             98904437--7---779999999998779899961455666512777799878-7--72----8976666566--68870


Q ss_pred             HHHHHH--------------HHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             143325--------------89999999875203676124579999-9998565-2589999999999999999999727
Q T0591           262 GVAFGS--------------RAIIARMEKLQAIVSLRAAGYSQAVL-RGWFDEA-PGWMEDRIARHQAIRDELLHVLRGC  325 (406)
Q Consensus       262 G~~~~~--------------~~~i~~l~~~~~~~~~~~~~~~q~a~-~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~  325 (406)
                      |.+...              +++.+.+.+..-....+.+...+.++ +..+.+. ....++..++.-++.+.|.+.|.+.
T Consensus       240 GiIl~~~g~~~~~~~~~~~~~~~~~kI~~avFPg~qggp~~h~iAa~Ava~~Ea~~~~fk~Ya~qVv~NAkaLA~~L~~~  319 (399)
T PF00464_consen  240 GIILTNKGYKNVDKQGKEIDEELAKKIDSAVFPGLQGGPHMHRIAALAVAFKEALSPEFKEYAKQVVKNAKALAEALNER  319 (399)
T ss_dssp             --EEES----EE-T---EE-HHHHHHHHHHHTTTT-----HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             69998056555555555217999998732418764346407689999999998658438999999999999999999767


Q ss_pred             CCCEEECC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEEC--CCHHHHHHHHHHHH
Q ss_conf             99455358-873078776688788989999999986891896----161026799985899850--99799999999999
Q T0591           326 EGVFARTP-QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVT----PGTEFSPHTADSVRLNFS--QDHEAAVAAARRIV  398 (406)
Q Consensus       326 ~g~~~~~p-~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~~--~~~e~l~~al~rl~  398 (406)
                       |+.+... .-...+|+++...+.+..++ ++++++.||.+.    |++. .+..+.-+||...  +..---++-++.|+
T Consensus       320 -G~~vv~ggTdnHlvlvD~~~~g~~g~~a-~~~L~~agI~~Nkn~iP~d~-~~~~~sGiRiGT~~~T~rG~~e~dm~~iA  396 (399)
T PF00464_consen  320 -GFRVVSGGTDNHLVLVDLRSKGLTGKEA-EKLLEEAGITVNKNTIPGDK-SPFVPSGIRIGTPALTTRGMKEDDMKEIA  396 (399)
T ss_dssp             ---EE------SS-EEEEGGGGT----HH-HHHHHHTTEB-B----TT-S-TTTT----EE--HHHHHTT--HHHHHHHH
T ss_pred             -CCEEEECCCCCEEEEEECCCCCCCHHHH-HHHHHHCCEEEECCCCCCCC-CCCCCCEEEECCHHHHHCCCCHHHHHHHH
T ss_conf             -9748616987737999755356899999-99999779476045157877-67688868968878977699989999999


Q ss_pred             HHH
Q ss_conf             999
Q T0591           399 TLV  401 (406)
Q Consensus       399 ~~~  401 (406)
                      +++
T Consensus       397 ~~I  399 (399)
T PF00464_consen  397 ELI  399 (399)
T ss_dssp             HHH
T ss_pred             HHC
T ss_conf             549


No 8  
>PF01212 Beta_elim_lyase:  Beta-eliminating lyase;  InterPro: IPR001597   This family includes tryptophanase (tryptophan indole-lyase, TNase) (4.1.99.1 from EC), tyrosine phenol-lyase (TPL) (4.1.99.2 from EC), threonine aldolase (4.1.2.5 from EC).; GO: 0016829 lyase activity, 0006520 amino acid metabolic process; PDB: 1svv_B 1v72_A 1c7g_A 1tpl_B 2vlh_B 2vlf_B 2tpl_B 2ez2_A 2ez1_A 1ax4_B ....
Probab=99.55  E-value=2.5e-15  Score=119.66  Aligned_cols=248  Identities=24%  Similarity=0.241  Sum_probs=157.5

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88899999999998087888878888988999999999986488678867078824872789999999972001010131
Q T0591            53 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQ  132 (406)
Q Consensus        53 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~  132 (406)
                      |+|.+++++.++... .. .|+...-..+|.+.+++.    +|.+     ..++++++|.+-.+++++++.|++.|++..
T Consensus         7 ~t~~m~~a~a~a~~g-d~-~Yg~D~~~~~le~~ia~l----~g~e-----~a~f~~sGT~AN~lal~~~~~~~~~vi~~~   75 (290)
T PF01212_consen    7 PTPAMLEAMAAANVG-DD-AYGEDPTTNRLEERIAEL----FGKE-----AALFVPSGTMANQLALRAHCRPGQSVICHD   75 (290)
T ss_dssp             --HHEEHHHHHTT----T-T----HHHHHHHHHHHHH----HTST-----EEEEE----HHHHHHHHHHHHHHHEEEEET
T ss_pred             CCHHHHHHHHHCCCC-CH-HHCCCHHHHHHHHHHHHH----HCCC-----EEEECCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf             679999999720345-32-206798899999999998----5998-----699968856899999999606698899745


Q ss_pred             CCCHHH---HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC------CCEEEECCCCCCCC-CCCCCHHHHHH
Q ss_conf             055138---999998299699986044666776667788999998502------54034215666432-33443789999
Q T0591           133 PDYFAN---RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNNPA-GVVYSAEEIGQ  202 (406)
Q Consensus       133 P~y~~~---~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~NPT-G~~~s~~~l~~  202 (406)
                      +++...   .....+.|.++++++.+.      +..++++++++.+..      ++++|+|+||+|-. |.++|.+++++
T Consensus        76 ~~Hi~~~E~ga~~~~~G~~~~~l~~~~------~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~gG~v~~~~el~~  149 (290)
T PF01212_consen   76 PAHIHFDETGAPEELSGAKLVPLPGDD------DGKLTPEDLEAAIEEHGDHAPQPALVSLENTTNSAGGTVYSLEELRA  149 (290)
T ss_dssp             TESSHHCHHHHHHHH---EEEEEB-GC------GT-B-HHHHHHHHHHS-TTSTTEEEEEEESS-ST-------HHHHHH
T ss_pred             CCCCCEECCCHHHHHHCCEEEEECCCC------CCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEECCHHHHHH
T ss_conf             761321174689998297899707854------57769999999833566767874079998077687988588999999


Q ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCCCC-CCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999863787578417502355688876-522332102678689985040010463112114332589999999875203
Q T0591           203 IAALAARYGATVIADQLYSRLRYAGASY-THLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIV  281 (406)
Q Consensus       203 i~~~a~~~~~~ii~De~Y~~l~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~  281 (406)
                      |.++|++||+.+..|-+=  |...-... .++.... ...|  ++..|+||..++|+  =+.+++++++++...+.+...
T Consensus       150 i~~~a~~~gl~lhmDGAR--l~na~~~~~~~~~e~~-~~~D--~v~~~~tK~~ga~~--Gavl~~~~~~i~~~~~~~k~~  222 (290)
T PF01212_consen  150 ISELAREHGLPLHMDGAR--LANAAAALGCTLAELA-AGAD--SVSFSLTKGGGAPG--GAVLAGSDDFIEEARRQRKRL  222 (290)
T ss_dssp             HHHHHHHTT-EEEEE-TT--HHHHHSHHHHHHHHHH-GG-S--EEEE-TTSTT-SS---EEEEEESSGHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEHHH--HHHHHHCCCCCHHHHH-CCCC--EEEEEEEECCCCCC--CEEEECCHHHHHHHHHHHHHH
T ss_conf             999999829989997233--7765433057999996-0789--99996170476664--459982789999999999996


Q ss_pred             CCCHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             676124--------57999999985652589999999999999999999727994
Q T0591           282 SLRAAG--------YSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGV  328 (406)
Q Consensus       282 ~~~~~~--------~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~  328 (406)
                      ..+...        +.|.++...++..   .. ...+..++.+++.+.|...++.
T Consensus       223 Gg~m~q~G~laa~~~~~~~~l~~le~~---~~-~~~~~~~~A~~la~~l~~~~~~  273 (290)
T PF01212_consen  223 GGGMRQAGILAAAELYQEAGLRALELW---LE-RLAHDHAMAKRLAEGLEELGGA  273 (290)
T ss_dssp             H-HHHHTHHCBCHHHHHHHHHBCEEEC---CT-THHHHSHHHHHHHHSHHEEEEE
T ss_pred             CCCEEECCCEEEECHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHCCCE
T ss_conf             587020561133101268888888741---68-8999999999999999978981


No 9  
>PF00202 Aminotran_3:  Aminotransferase class-III;  InterPro: IPR005814   Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped  into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2pb2_A 2pb0_B 1wkg_A 1wkh_B 1vef_B 2can_A 1gbn_B 1oat_C 2byj_A 2byl_B ....
Probab=99.31  E-value=1.8e-10  Score=86.77  Aligned_cols=247  Identities=15%  Similarity=0.151  Sum_probs=149.4

Q ss_pred             CCEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf             8334156--78678878889999999999808788887888898899999999998648867886707882487278999
Q T0591            39 RPVDFSH--GDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL  116 (406)
Q Consensus        39 ~~i~ls~--G~pd~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~  116 (406)
                      +.|||..  |...+-+-.|.+.+++.+.+......  .......+.+..+++++....+.   ..+.++++++++++...
T Consensus        17 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~--~~~~~~~~~~~~lae~L~~~~p~---~~~~v~f~~SGseAve~   91 (339)
T PF00202_consen   17 EYLDFTSGYGVVNLGHNHPEVVEAIKEQLERLNHV--SFFGFPHPPAVELAEKLAELAPP---GLDRVFFANSGSEAVEA   91 (339)
T ss_dssp             EEEBSSHHHHTT------HHHHHHHHHHHHHCSHH--STTTSEEHHHHHHHHHHHHHS-T---TESEEEEE----HHHHH
T ss_pred             EEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHCCC---CCCEEEEECCCCHHHHH
T ss_conf             99986655230057888199999999999753234--32245767999999999710899---75679875688579999


Q ss_pred             HHHHHH-------HCC-HHHHHHHCCCHHHHHHHHHH-CC------------EEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             999997-------200-10101310551389999982-99------------6999860446667766677889999985
Q T0591           117 AVAATV-------ARG-DKVAIVQPDYFANRKLVEFF-EG------------EMVPVQLDYVSADETRAGLDLTGLEEAF  175 (406)
Q Consensus       117 ~~~~l~-------~pG-d~Vl~~~P~y~~~~~~~~~~-g~------------~~v~v~~~~~~~~~~~~~~d~~~l~~~~  175 (406)
                      +++.-.       .+| +.|+...-+|++........ +.            ..+.+|...... +.......+.+++.+
T Consensus        92 AiklAr~y~~~~~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~  170 (339)
T PF00202_consen   92 AIKLARQYHKKRGYTGRSKIISFEGSYHGRTLGALSVTGNPGYRKPFGPLLPGVIFVPFPDLYA-DEEEQACLEYLEELI  170 (339)
T ss_dssp             HHHHHHHHHHHHHHTT--EEEEECT------HHHCTTTTSHHHHGCCSSSSS-EEEEETTEHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHH
T ss_conf             9999866400247888747999368657787461565578755566545676530013797134-567888899999999


Q ss_pred             ----CCCCEEEECCCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEE
Q ss_conf             ----025403421566-643233-44378999999998637875784175023556888765223321026786899850
Q T0591           176 ----KAGARVFLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMG  249 (406)
Q Consensus       176 ----~~~~k~i~l~~P-~NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S  249 (406)
                          .+++.++++ -| ..-.|. ..+++.++++.++|++||+++|.||+...|.-.|.-+.. .. ....||  |+  +
T Consensus       171 ~~~~~~~iAAvii-EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~-~~-~gv~PD--iv--~  243 (339)
T PF00202_consen  171 AALGPDDIAAVII-EPIQGEGGVIPPPPGYLQALRELCREHGILLIFDEVQTGFGRTGKMFAF-EH-FGVEPD--IV--T  243 (339)
T ss_dssp             HHHCCTTEEEEEE-ESEE-----EEB-HHHHHHHHHHHHHTT-EEEEE-S------SSTTSGG-GG-GT--SS--EE--E
T ss_pred             HHHCCCCEEEEEE-EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHH-HC-CCCCCH--HH--H
T ss_conf             9747997899999-4012468962689899985898735672799997688676576786220-02-487114--99--9


Q ss_pred             CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             40010463112114332589999999875203676124579999999856
Q T0591           250 PSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE  299 (406)
Q Consensus       250 ~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~  299 (406)
                      +||.++ .|+-+|.+++.+++.+.+.......+++.+.++..++.+.|+.
T Consensus       244 ~gK~l~-gG~P~sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~  292 (339)
T PF00202_consen  244 FGKGLG-GGLPISAVVGREEIMDAFDPGSHGSTFGGNPLACAAALATLDI  292 (339)
T ss_dssp             E-TTT--E-EEEEEEEEEHHHHTTCTTTSS--TTTT-HHHHHHHHHHHHH
T ss_pred             HHHHCC-CCCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             876426-8613422440488887751488666467896999889999999


No 10 
>PF06838 Alum_res:  Aluminium resistance protein ;  InterPro: IPR009651   This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria .; PDB: 3ht4_A 3gwp_B 3fd0_B.
Probab=99.25  E-value=2e-10  Score=86.44  Aligned_cols=175  Identities=19%  Similarity=0.219  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHCCHHHHHHH-CCCHHHHHHHHHH----------CCEEE
Q ss_conf             999999999864886788-67078824872789999999972001010131-0551389999982----------99699
Q T0591            83 RDLLAPRLAAFTGAPVDA-RDGLIITPGTQGALFLAVAATVARGDKVAIVQ-PDYFANRKLVEFF----------EGEMV  150 (406)
Q Consensus        83 r~aia~~~~~~~g~~~~~-~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~-P~y~~~~~~~~~~----------g~~~v  150 (406)
                      |+.+-+-+.+-+|.+.-- .-|  +.+| |++|..++..++.|||+.+..+ .-|.+....+...          |..-.
T Consensus        56 Rd~Le~vyA~vfgaE~ALVR~q--~vSG-THAi~~aLfg~LrPGD~ll~itG~PYDTL~eVIGi~g~~~GSL~e~GI~Y~  132 (403)
T PF06838_consen   56 RDKLERVYADVFGAEDALVRPQ--FVSG-THAIATALFGVLRPGDELLSITGKPYDTLEEVIGIRGSGQGSLKEFGIKYD  132 (403)
T ss_dssp             -HHHHHHHHHHCT-S--B-STT--S-----HHHHHHH--------EEEE------CCHHHH----S-----TGGGT-EEE
T ss_pred             HHHHHHHHHHHHCCHHHHHCCC--CCCH-HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCHHHHCCCEE
T ss_conf             8999999999956355530120--0440-889999997367899868871699707679872879999888899397528


Q ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCCCCC
Q ss_conf             98604466677666778899999850254034215-6664323344378999999998637--87578417502355688
Q T0591           151 PVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS-NPNNPAGVVYSAEEIGQIAALAARY--GATVIADQLYSRLRYAG  227 (406)
Q Consensus       151 ~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~-~P~NPTG~~~s~~~l~~i~~~a~~~--~~~ii~De~Y~~l~~~~  227 (406)
                      .|++.      ++..+|++.++++++++||+++|- |..--+=.+++.+++++++++.++.  ++++++|+||++|+-..
T Consensus       133 ~v~L~------~dg~~D~~~i~~~i~~~tk~v~IQRS~GYs~R~slsi~~I~~~i~~ik~~~p~~ivfVDNCYGEFvE~~  206 (403)
T PF06838_consen  133 EVDLT------EDGEIDYEAIKKAIKPKTKMVLIQRSRGYSWRPSLSIEEIKEIIKFIKEINPDVIVFVDNCYGEFVETK  206 (403)
T ss_dssp             E--B-----------B-HHHHHHHHHTTEEEEEEE------SS----HHHHHHHHHHHHHH-TTSEEEEE------SSSS
T ss_pred             EEEEC------CCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf             99753------799828999998617565599995278876789859999999999999758983999978861201565


Q ss_pred             CCCCCHHHHHCCCCCCEEEEEECCHHCCCCCC-C-CHHHHHHHHHHHHHHH
Q ss_conf             87652233210267868998504001046311-2-1143325899999998
Q T0591           228 ASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-R-LGVAFGSRAIIARMEK  276 (406)
Q Consensus       228 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R-iG~~~~~~~~i~~l~~  276 (406)
                       +++..-    .|    ++.+|+=|.-| .|+ . -||+++.+++++....
T Consensus       207 -EP~~vG----AD----liaGSLIKNpG-GgiAptGGYIaGr~dlVe~aa~  247 (403)
T PF06838_consen  207 -EPTEVG----AD----LIAGSLIKNPG-GGIAPTGGYIAGRKDLVEQAAY  247 (403)
T ss_dssp             --GGG------------EEE--TTS-------------BB--HHHHHHHHH
T ss_pred             -CCCCCC----HH----HEECCCEECCC-CCCCCCCCEEECHHHHHHHHHH
T ss_conf             -853016----44----40120124798-8736757778536999999864


No 11 
>PF02347 GDC-P:  Glycine cleavage system P-protein;  InterPro: IPR003437   This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is:    Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating); PDB: 1wyv_A 1wyu_E 1wyt_C.
Probab=99.00  E-value=1.9e-08  Score=73.01  Aligned_cols=312  Identities=18%  Similarity=0.148  Sum_probs=161.4

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf             156786788788899999999998087-888878-----88898899999999998648867886707882487278999
Q T0591            43 FSHGDVDAHEPTPGAFDLFSAGVQSGG-VQAYTE-----YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL  116 (406)
Q Consensus        43 ls~G~pd~~~p~~~~~~~~~~~~~~~~-~~~Y~~-----~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~  116 (406)
                      ++.|.-+...|  ..++..  -+..+. .+.|.|     ++|..+..-.....+....|.++.   +.-+-.|++.+-..
T Consensus        70 iG~G~y~~~~P--~~i~~~--i~~~~ef~TaytPYQpEisQG~Lq~l~e~Qt~i~eLTGmdva---naSl~d~atA~aEa  142 (429)
T PF02347_consen   70 IGLGSYTHKVP--AVIDRN--ILSRPEFYTAYTPYQPEISQGRLQALFEYQTMICELTGMDVA---NASLYDGATAAAEA  142 (429)
T ss_dssp             -------------HHHHH---HHCHHHTTTS-STTSGGGB---HHHHHHHHHHHHHH----EE----SB-----HHHH--
T ss_pred             CCCCCCCCEEC--HHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCHHHHHHH
T ss_conf             36651585107--777224--334621001579999478899999999999999997697855---77888606799999


Q ss_pred             HHHHH---HHCCHHHHHHHCCCHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             99999---720010101310551389999----98299699986044666776667788999998502540342156664
Q T0591           117 AVAAT---VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNN  189 (406)
Q Consensus       117 ~~~~l---~~pGd~Vl~~~P~y~~~~~~~----~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~N  189 (406)
                      +.++.   -..+++|+++.-.++.+...+    ...|.+++-++++..     + ..|        .+++.++++.|||.
T Consensus       143 ~~ma~r~~~~~~~kvlv~~~~hp~~~~v~~t~a~~~g~~iv~~~~~~~-----~-~~d--------~~~~a~v~vq~Pn~  208 (429)
T PF02347_consen  143 MLMAVRITRRKRNKVLVPDSVHPQNRAVLRTYAEGAGIEIVTVPLDDD-----G-MDD--------DDDTAAVMVQYPNT  208 (429)
T ss_dssp             -HHHHHHH-----EEEEETT--HHHHHHHHHHHHHEEEEEEEE--------------------------EEEEEEESS--
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHEEECCCEEEEECCCCC-----C-CCC--------CCCEEEEEEECCCC
T ss_conf             999999837887389976888988899998404506818999763014-----7-776--------63748998746998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCC----CCCCHHHH
Q ss_conf             32334437899999999863787578417502355688876522332102678689985040010463----11211433
Q T0591           190 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAF  265 (406)
Q Consensus       190 PTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~~  265 (406)
                       .|.+-+   +++|+++++++|.++++ -+  ++    ....-+..++....|  |+++ .+|.||.|    |=-.|+++
T Consensus       209 -~G~~ed---~~~i~~~~h~~gal~~~-~a--n~----~Al~~l~~Pge~GAD--I~vg-~~Q~fgiP~g~GGP~~G~~a  274 (429)
T PF02347_consen  209 -FGVFED---IEEIAEIAHEAGALVYV-GA--NP----NALGGLKSPGEMGAD--IAVG-EHQTFGIPHGFGGPGAGFFA  274 (429)
T ss_dssp             ------T---HHHHHHHHHH---EEEE-E----C----CCT--B-----------EEE--TTTTT-------------BE
T ss_pred             -CEEEEE---HHHHHHHHHHCCCEEEE-EE--CH----HHHCCCCCHHHCCCC--EEEE-CCCCCCCCCCCCCCCHHHHH
T ss_conf             -747801---99999999985999999-95--87----887087883116766--7940-79877767678887601676


Q ss_pred             HHHHHHH----------------------------HHHHHHHHCCCCHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             2589999----------------------------999875203676124579--9999998565258999999999999
Q T0591           266 GSRAIIA----------------------------RMEKLQAIVSLRAAGYSQ--AVLRGWFDEAPGWMEDRIARHQAIR  315 (406)
Q Consensus       266 ~~~~~i~----------------------------~l~~~~~~~~~~~~~~~q--~a~~~~l~~~~~~~~~~~~~~~~~r  315 (406)
                      ..+++++                            .+++.|....+|++....  .+...+.-.+.+=+++.-.....+.
T Consensus       275 ~~~~l~r~lPGRiVG~t~D~~G~~~~~LtLqtREQhIrReKAtSNIctnqaL~A~~A~~Y~~~~Gp~GL~~iA~~~~~~A  354 (429)
T PF02347_consen  275 VRKELVRQLPGRIVGVTKDADGKRAYRLTLQTREQHIRREKATSNICTNQALLALAAAMYASYHGPEGLKEIAERIHLNA  354 (429)
T ss_dssp             E-GGGGGGS-S-EEEB--BE------EEE-GGGTCHHHGGCSS----S--HHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf             58988866898845531136677136753256765210000000024418999999999999879789999999999999


Q ss_pred             HHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             99999997279945535887307877668878898999999998689189616102679998589985099799999999
Q T0591           316 DELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAAR  395 (406)
Q Consensus       316 ~~l~~~L~~~~g~~~~~p~gg~~~w~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~l~~al~  395 (406)
                      ..+.+.|.++.+..  .++.-||=++....  .+ .. +..++++ ++.  .|-.|.....+.+-+|+.  +-.-++-++
T Consensus       355 ~yl~~~L~~~~~~~--~~~~~f~e~v~~~~--~~-~~-~~~l~~~-~~~--~gl~~~~~~~~~~~i~~t--E~~t~~~id  423 (429)
T PF02347_consen  355 NYLAKRLKEIFGLP--FPGPFFFEFVTVFP--KD-KK-VEELLKR-GIA--GGLNLRYPDDGALLICVT--ETRTKEDID  423 (429)
T ss_dssp             HHHHHHHCC--BEC--TS-SS-SSEEEEES--S--HH-HHHHHH---------EEETT----EEEEE----TT--HHHHH
T ss_pred             HHHHHHHHHHCCCC--CCCCCCEEEEEECC--CC-HH-HHHHHHH-HHH--CCCCCCCCCCCEEEEEEC--CCCCHHHHH
T ss_conf             99999988753866--67978111442128--73-66-9999999-996--698754058997999834--799999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q T0591           396 RIVTL  400 (406)
Q Consensus       396 rl~~~  400 (406)
                      +|.++
T Consensus       424 ~l~~~  428 (429)
T PF02347_consen  424 ALVQA  428 (429)
T ss_dssp             HHHH-
T ss_pred             HHHHC
T ss_conf             99853


No 12 
>PF00282 Pyridoxal_deC:  Pyridoxal-dependent decarboxylase conserved domain;  InterPro: IPR002129    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group , . Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine ; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine . These enzymes belong to the group II decarboxylases , .; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 2qma_B 2okk_A 1es0_B 2okj_A 2jis_B 1xey_B 2dgk_D 1pmm_F 3fz6_E 2dgl_C ....
Probab=98.96  E-value=5.8e-08  Score=69.78  Aligned_cols=261  Identities=17%  Similarity=0.245  Sum_probs=147.9

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCCEEEEECCCCHHHHHHHHHHHH--------CC-
Q ss_conf             99999998087888878888988999999999986488678----867078824872789999999972--------00-
Q T0591            59 DLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVD----ARDGLIITPGTQGALFLAVAATVA--------RG-  125 (406)
Q Consensus        59 ~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~----~~~~I~it~G~~~~l~~~~~~l~~--------pG-  125 (406)
                      +.+...+. .....|....+..++-+.+.+|+.+..|.+..    ++..=++|+|++++...++.+.-+        .| 
T Consensus        58 d~l~~~~n-~n~~~~~~sP~~t~iE~~vi~wl~~l~g~~~~~~~~~~~~G~~tsGgs~anl~al~aAR~~~~~~~~~~~~  136 (373)
T PF00282_consen   58 DLLASALN-QNGLTWESSPAATEIEREVIDWLAELLGLPASFYDSGEAGGIFTSGGSEANLTALLAARDRALPRVKAEGV  136 (373)
T ss_dssp             HHHHHHHT--BTT-TTTSHHHHHHHHHHHHHHHHHTT--GGG-TTTT-B--EE--HHHHHHHHHHHHHHHHHHHHHCH-T
T ss_pred             HHHHHHHC-CCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99998613-56435467861243189999999999589742002578842883553899999999999998665421466


Q ss_pred             ----H-HHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC-----CEEEECC-CCCCCCCCC
Q ss_conf             ----1-0101310551389999982996999860446667766677889999985025-----4034215-666432334
Q T0591           126 ----D-KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG-----ARVFLFS-NPNNPAGVV  194 (406)
Q Consensus       126 ----d-~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~-----~k~i~l~-~P~NPTG~~  194 (406)
                          . .|++..=++++....+...|..++.||++.      ++.+|+++|++.+.+.     +-++++. -..-.||. 
T Consensus       137 ~~~~~~~i~~s~~aH~s~~Kaa~~lGlgv~~Vp~d~------~~~md~~~L~~~i~~~~~~G~~p~~VvataGtT~~Ga-  209 (373)
T PF00282_consen  137 REIGRPVIYCSEQAHYSIKKAARILGLGVRVVPTDE------NGRMDVDALEKAIEEDRAAGKTPFAVVATAGTTNTGA-  209 (373)
T ss_dssp             TTSSSEEEEEETTS-THHHHHHHHTT-EEEEE-B-T------TSSB-HHHHHHHHHHHHHT--EEEEEEEE---TTT---
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHCCCCEEEECCCC------CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-
T ss_conf             556760587621214799999985797328932386------6573899999998873025665358885268866553-


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHH-HHHHHH-
Q ss_conf             437899999999863787578417502355688876522332102678689985040010463112114332-589999-
Q T0591           195 YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIA-  272 (406)
Q Consensus       195 ~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~-~~~~i~-  272 (406)
                        -+.+++|.++|+++++|+-+|-+|+...+--+....+  ......-..|. ....|.+.+| +-+|++.. +++... 
T Consensus       210 --iD~l~~i~~i~~~~~~wlHVDaA~GG~~~~~~~~r~~--~~gle~aDSit-~d~HK~l~~p-~~~~~ll~r~~~~l~~  283 (373)
T PF00282_consen  210 --IDPLEEIADICRKYNLWLHVDAAYGGSALLSPFYRHL--LFGLERADSIT-IDPHKWLYVP-YGCGVLLVRDKELLRS  283 (373)
T ss_dssp             -----HHHHHHHHHHHT-EEEEEES----GGGHTTTGGG--GTTSTTESEEE-E-TTSTTS---SS-EEEEESSGGGHHG
T ss_pred             --HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCHH--HCCCCCCEEEE-ECHHHHCCCC-CCCEEEEECCHHHHHH
T ss_conf             --2009999889863697568623545524430231011--04874440588-8828845666-1465777447777777


Q ss_pred             HHHHHHHHC----------------CCCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             999875203----------------6761245799999998---565258999999999999999999972799455358
Q T0591           273 RMEKLQAIV----------------SLRAAGYSQAVLRGWF---DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP  333 (406)
Q Consensus       273 ~l~~~~~~~----------------~~~~~~~~q~a~~~~l---~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p  333 (406)
                      .+..-..+.                ++..+. ...++..|+   .-+.+-.++...+.-+..+.+.+.+++.+.++...|
T Consensus       284 ~~~~~a~Yl~~~~~~~~~~~d~~~~tl~~sR-~~~alk~W~~l~~~G~~g~~~~i~~~~~~A~~~~~~i~~~~~~el~~~  362 (373)
T PF00282_consen  284 AFSINADYLFHPDRESDDSYDYGDWTLEGSR-RFRALKLWASLRSLGREGYREMIERCIELARYFAELIRASPDFELVNP  362 (373)
T ss_dssp             GG-EEBTTSS-S-SSS-GGGSBCCTSS--S--B-CHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTTTEEESST
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             6526923025741004477773675689983-237999999999968998999999999999999999974889799758


Q ss_pred             C
Q ss_conf             8
Q T0591           334 Q  334 (406)
Q Consensus       334 ~  334 (406)
                      .
T Consensus       363 ~  363 (373)
T PF00282_consen  363 P  363 (373)
T ss_dssp             -
T ss_pred             C
T ss_conf             9


No 13 
>PF03841 SelA:  L-seryl-tRNA selenium transferase;  InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.   This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2aeu_A 2aev_A.
Probab=98.66  E-value=8e-09  Score=75.61  Aligned_cols=253  Identities=19%  Similarity=0.234  Sum_probs=142.0

Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88999999999980878888788889889999-99999986488678867078824872789999999972001010131
Q T0591            54 TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDL-LAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQ  132 (406)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~a-ia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~  132 (406)
                      ++.+++++.+.+.......|--..|...-|.. +...+.+..|    .++ .+++|....++++++.++.. |.+|++..
T Consensus        19 s~~a~~a~~~~~~~y~nLE~dL~~G~RG~R~~~v~~ll~~ltg----AEa-A~VVNNNAAAV~L~L~~la~-~kEVIVSR   92 (367)
T PF03841_consen   19 SEEAIDAVKEVASGYSNLEYDLETGKRGSRYSHVEELLCELTG----AEA-ALVVNNNAAAVLLALNTLAA-GKEVIVSR   92 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             2222222222222222222222222222222222222222222----222-22222222222222222222-22222222


Q ss_pred             CCC------HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC--CCCCCHHHHHHHH
Q ss_conf             055------13899999829969998604466677666778899999850254034215666432--3344378999999
Q T0591           133 PDY------FANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPA--GVVYSAEEIGQIA  204 (406)
Q Consensus       133 P~y------~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPT--G~~~s~~~l~~i~  204 (406)
                      =--      +-...+++..|++++.|...        ..-.+.+++++++++|.+++...++|-.  |-+- .-.+++++
T Consensus        93 GelVeiGg~FRIpdvm~~sGa~LvEVGtT--------N~T~~~Dye~AI~e~Ta~llkVh~Sn~~i~GFt~-~~~~~el~  163 (367)
T PF03841_consen   93 GELVEIGGSFRIPDVMRQSGAKLVEVGTT--------NRTHLRDYENAINENTAALLKVHTSNFRIQGFTE-EVSLEELA  163 (367)
T ss_dssp             -----------------------------------------------------------------------------HHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHH
T ss_conf             22222222222222222222222222222--------2222222222222222222222222222222234-44799999


Q ss_pred             HHHHHCCCEEEECCCCCCCC---CCCCC-CCCHHHHHCCCCCCEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99863787578417502355---68887-652233210267868998504001046311211433258999999987520
Q T0591           205 ALAARYGATVIADQLYSRLR---YAGAS-YTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAI  280 (406)
Q Consensus       205 ~~a~~~~~~ii~De~Y~~l~---~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~~~~~~~i~~l~~~~~~  280 (406)
                      ++|++|++++++|..-+.+.   ..+-+ -+.+......-  --++++|-.|.++-|  ..|.++|.+++|+++++....
T Consensus       164 ~la~~~~ip~i~DlgSG~l~dl~~~gl~~Ep~v~~~l~~G--aDlV~fSGdKlLgGP--QAGiI~Gkk~lI~~lk~~~l~  239 (367)
T PF03841_consen  164 ELAKEHGIPVIVDLGSGSLVDLSKYGLPDEPTVQEALAAG--ADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKHPLG  239 (367)
T ss_dssp             HHHHHHT--EEEE------HHHHTT----------CCC------EEE--TTSS----------EE--HHHHHHHHH----
T ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCC--CCEEEEECCEECCCC--CCEEEEEHHHHHHHHHHCCCC
T ss_conf             9986659988998999865477512463025599999779--998998899817899--836995139999999777876


Q ss_pred             CCCCHHHHHHHHHHH----HHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             367612457999999----98565--------2589999999999999999999727
Q T0591           281 VSLRAAGYSQAVLRG----WFDEA--------PGWMEDRIARHQAIRDELLHVLRGC  325 (406)
Q Consensus       281 ~~~~~~~~~q~a~~~----~l~~~--------~~~~~~~~~~~~~~r~~l~~~L~~~  325 (406)
                      -.+-+....-.++..    +++..        ...+....+.++.+.+.+.+.|...
T Consensus       240 RalrvdK~tlaaL~atL~~y~~~~~~~~~ip~l~mL~~~~~~l~~rA~~L~~~l~~~  296 (367)
T PF03841_consen  240 RALRVDKETLAALEATLRLYLDPDKAAEEIPTLRMLTESLEELRARAERLAAALKAA  296 (367)
T ss_dssp             ------HHHH---HHHHHH--------------------------------------
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             400479999999999999999860122212222222222222222222222222222


No 14 
>PF05889 SLA_LP_auto_ag:  Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen);  InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis . The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway . The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; PDB: 2e7j_B 2e7i_B 2z67_B 3bcb_A 3bc8_A 3bca_A.
Probab=98.37  E-value=5.7e-05  Score=49.55  Aligned_cols=295  Identities=16%  Similarity=0.138  Sum_probs=152.5

Q ss_pred             HHHHHHCCCCCCCCCEEEEECCCCHH-HHHHHHHHH--HCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCC
Q ss_conf             99998648867886707882487278-999999997--200101013105513899999829969998604466677666
Q T0591            88 PRLAAFTGAPVDARDGLIITPGTQGA-LFLAVAATV--ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRA  164 (406)
Q Consensus        88 ~~~~~~~g~~~~~~~~I~it~G~~~~-l~~~~~~l~--~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~  164 (406)
                      +++ +..|++-. . ..++.+-+|.- |.+.+.++-  ..++.|+.+.-...+-..++..+|.+++-||...   .++..
T Consensus        64 d~~-~~~G~~~~-~-~~~~vP~aTGm~l~l~l~a~~~~~~a~~ViwsridqkSc~kai~~AGl~~~vV~~~~---~~d~l  137 (389)
T PF05889_consen   64 DAL-RIAGLRSC-K-SCFVVPMATGMSLTLCLLALRKRPKADYVIWSRIDQKSCFKAIERAGLEPVVVPTVL---EGDEL  137 (389)
T ss_dssp             HHH-HH---CCH-C--EECHSS----HHHHHHHHHHHHCC--EEEEEEEETHHHHHHHHH---EEEEE-BEE---TTT-E
T ss_pred             HHH-HHCCCCCC-C-EEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCC---CCCCC
T ss_conf             999-97498510-3-068840334232999999974357886799950365206899996697279965356---78700


Q ss_pred             CCCHHHHHHHHCC---CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHH-HCCC
Q ss_conf             7788999998502---54034215666432334437899999999863787578417502355688876522332-1026
Q T0591           165 GLDLTGLEEAFKA---GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE-AAVD  240 (406)
Q Consensus       165 ~~d~~~l~~~~~~---~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~-~~~~  240 (406)
                      ..|.+.+++.+.+   ...+.++++++=--+..  .+++.+|+++|+++|++.|+..+|+--     ........ .+..
T Consensus       138 ~td~~~ie~~ie~~g~~~ilcvltttscfapr~--~D~i~~Iaklc~~~~IPhlvNnAYgvQ-----~~~~~~~l~~a~~  210 (389)
T PF05889_consen  138 ITDEEAIEKAIEELGADNILCVLTTTSCFAPRN--PDDIEEIAKLCKEYDIPHLVNNAYGVQ-----SSYIMHLLEKAWR  210 (389)
T ss_dssp             E-HHHHHHHHHHHCH-TCEEEEEEESS--TTB------HHHHHHHHHHHT--EEEE---TTT------HHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHHCCCCEEECCCCHHH-----HHHHHHHHHHHHH
T ss_conf             585899999999728887689998047658888--741999999999819976972511112-----5989999987644


Q ss_pred             CCC-EEEEEECCHHCCCCCCCCH--HHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH----HHHHHHHHHH
Q ss_conf             786-8998504001046311211--4332-589999999875203676124579999999856525----8999999999
Q T0591           241 AEN-VVTIMGPSKTESLSGYRLG--VAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG----WMEDRIARHQ  312 (406)
Q Consensus       241 ~~~-~i~~~S~SK~~~~~GlRiG--~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~----~~~~~~~~~~  312 (406)
                      ..| -+++.|.-|.|=.|   +|  .+++ ++..+..+.+.--...+.++...  ....++.-+..    .+.++.+.+.
T Consensus       211 ~GRvD~~vqStDKNFlVp---vGgai~as~~~~~v~~is~~YpgRas~s~~ld--~fitLlsLG~tg~~~ll~~r~~~f~  285 (389)
T PF05889_consen  211 VGRVDAVVQSTDKNFLVP---VGGAIMASSDPSGVLAISKEYPGRASRSPILD--LFITLLSLGCTGYGALLKERMASFP  285 (389)
T ss_dssp             S---SEEECTHHHHHC---------CEEES-HHHHHHHCCCGHHHHTSHHHHH--HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCEEEE---CCCCEEEECCHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             132223787359886820---49838882587899999866799541565079--9999998605567789999999999


Q ss_pred             HHHHHHHHHHHHCCCCEE-ECCCCCEEEEEECCCCC----CCHHHHHHHHHHHCCEE----EEECCCCCCC-----CCCE
Q ss_conf             999999999972799455-35887307877668878----89899999999868918----9616102679-----9985
Q T0591           313 AIRDELLHVLRGCEGVFA-RTPQAGSYLFPRLPKLA----VAPAEFVKILRLQAGVV----VTPGTEFSPH-----TADS  378 (406)
Q Consensus       313 ~~r~~l~~~L~~~~g~~~-~~p~gg~~~w~~~~~~~----~~~~~~~~~Ll~~~gV~----v~pG~~Fg~~-----~~~~  378 (406)
                      ...+++.+.-.+. +-.. ..|..-.-+-+.++...    .+...|...| ...||.    |+|+..+...     ...|
T Consensus       286 ~l~erl~~~a~e~-~e~l~~~p~N~is~aitl~~l~~~~~k~~~~lgs~L-~~RgVsG~RvV~~~~~~~ts~~~~~~~~Y  363 (389)
T PF05889_consen  286 YLKERLKKWAEEV-GERLLETPRNHISIAITLPTLDEISQKDITFLGSML-FSRGVSGIRVVTPTWKKQTSHLDEYPVPY  363 (389)
T ss_dssp             HHHHHHHHHHHHC-CEEB---TT-SSEEEEE-CCCHHHCCSHHHHHHHHH-HHTTEE--E-EETT---EESSSS--SSSE
T ss_pred             HHHHHHHHHHHHH-HCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCCCCEECCCCCCCCCCCCCCCCHH
T ss_conf             9999999999986-031431578972689965654323211088999999-74887555110468885534677777316


Q ss_pred             EEEE--ECCCHHHHHHHHHHHHHHHH
Q ss_conf             8998--50997999999999999999
Q T0591           379 VRLN--FSQDHEAAVAAARRIVTLVE  402 (406)
Q Consensus       379 iRis--~~~~~e~l~~al~rl~~~~~  402 (406)
                      +-++  ++.++|+++..++||.+.++
T Consensus       364 l~~asaiG~t~eevd~~~~~l~k~~~  389 (389)
T PF05889_consen  364 LTAASAIGLTREEVDYFVDRLDKILK  389 (389)
T ss_dssp             EEEEE-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             68888808989999999999988649


No 15 
>PF04321 RmlD_sub_bind:  RmlD substrate binding domain;  InterPro: IPR005913    dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen.  dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH  ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 1n2s_A 1kbz_A 1kc1_A 1kc3_A 2ggs_A 1vl0_B.
Probab=80.12  E-value=1  Score=20.70  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHCC-CCEEEECCCC-C-------CCCCC-CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             7788999998502-5403421566-6-------43233-44378999999998637875784175023556888765223
Q T0591           165 GLDLTGLEEAFKA-GARVFLFSNP-N-------NPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLR  234 (406)
Q Consensus       165 ~~d~~~l~~~~~~-~~k~i~l~~P-~-------NPTG~-~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~  234 (406)
                      .-|.+++++.+.. ++..|+-|-- +       ||-.. .....--..|+++|+++++.+|.=-  .+.+|+|....+..
T Consensus        37 ~~~~~~v~~~~~~~~pd~VIn~Aa~t~~d~~e~~~~~a~~vN~~~~~~la~~~~~~~~~li~iS--Td~VFdG~~~~py~  114 (286)
T PF04321_consen   37 LTDPEAVEKLLEDVKPDVVINCAAYTNVDACESNPEEAYLVNVEAPKNLAEACKEHGARLIHIS--TDYVFDGTSGGPYD  114 (286)
T ss_dssp             TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHTTT--EEEEEE--EGGG-----SS-B-
T ss_pred             CCCHHHHHHHHHHCCCCEEEECHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC--CEEEECCCCCCCCC
T ss_conf             9898999999996299989954011366555318798998899999999999996599099953--30477688899888


Q ss_pred             HHHCCCCCCEEEEEECCHHCC----------CCCCCCHHHHHH--HHHHHHHHH
Q ss_conf             321026786899850400104----------631121143325--899999998
Q T0591           235 AEAAVDAENVVTIMGPSKTES----------LSGYRLGVAFGS--RAIIARMEK  276 (406)
Q Consensus       235 ~~~~~~~~~~i~~~S~SK~~~----------~~GlRiG~~~~~--~~~i~~l~~  276 (406)
                      ......+   +..++-||.-+          ..=+|++|+.++  ..++..+.+
T Consensus       115 E~d~~~P---~~~YG~sK~~~E~~v~~~~~~~~IlR~~~v~g~~~~~f~~~~~~  165 (286)
T PF04321_consen  115 EDDEPNP---LNVYGRSKLEAEQAVLAANPDALILRTSWVYGPGGRNFLTWLLR  165 (286)
T ss_dssp             TTS-------SS----TTT---HHHHHH-SSEEEEEE-SEES-----HHHHHHH
T ss_pred             CCCCCCC---CCHHHHHHHHHHHHHHHHCCCEEEEECEEECCCCCCCHHHHHHH
T ss_conf             9999999---89999999988899998579879995628708888879999998


No 16 
>PF00728 Glyco_hydro_20:  Glycosyl hydrolase family 20, catalytic domain;  InterPro: IPR015883   Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes.   In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside .; PDB: 2epk_X 2epo_A 2epn_B 2epl_X 2epm_X 1yht_A 1hp5_A 1m01_A 1hp4_A 1m03_A ....
Probab=75.99  E-value=1.7  Score=19.18  Aligned_cols=22  Identities=41%  Similarity=0.591  Sum_probs=9.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             4437899999999863787578
Q T0591           194 VYSAEEIGQIAALAARYGATVI  215 (406)
Q Consensus       194 ~~s~~~l~~i~~~a~~~~~~ii  215 (406)
                      .||++++++|++.|+++|+-||
T Consensus        68 ~YT~~di~eiv~yA~~~gI~vI   89 (350)
T PF00728_consen   68 YYTKEDIREIVAYAKERGIEVI   89 (350)
T ss_dssp             EB-HHHHHHHHHHHHHTT-EEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEE
T ss_conf             6199999999999998499898


No 17 
>PF04392 ABC_sub_bind:  ABC transporter substrate binding protein;  InterPro: IPR007487   This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 2qh8_A.
Probab=69.76  E-value=1.5  Score=19.53  Aligned_cols=121  Identities=19%  Similarity=0.241  Sum_probs=60.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHH---HHHCCCHHHHHHHHHHCCEE
Q ss_conf             878888988999999999986488678867078824872789999999972001010---13105513899999829969
Q T0591            73 YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVA---IVQPDYFANRKLVEFFEGEM  149 (406)
Q Consensus        73 Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl---~~~P~y~~~~~~~~~~g~~~  149 (406)
                      |-..+|.++...++++.+...     . .| ++++.|+..+.. +.....+ +-.|+   +.+|............|..+
T Consensus        38 ~~~a~~d~~~~~~i~~~l~~~-----~-~D-lIva~gt~aa~~-l~~~~~~-~iPIVf~~V~dp~~~glv~s~~~pg~nv  108 (294)
T PF04392_consen   38 YRNANGDPERLAAIARKLVAD-----K-PD-LIVAIGTPAAQA-LAKAIKD-DIPIVFSGVSDPVGAGLVPSLDRPGGNV  108 (294)
T ss_dssp             EEE----HHHHHHHHHHH-----------S-EEE---HHHHHH-HHHH-SS--S-EEEEEES------S-S-SS-----E
T ss_pred             EECCCCCHHHHHHHHHHHHHC-----C-CC-EEEEECCHHHHH-HHHHHCC-CCCEEEEECCCHHHCCCCCCCCCCCCCE
T ss_conf             934788999999999999756-----9-99-999918499999-9973078-8649999716834335665566899988


Q ss_pred             EEEEECCCCCCCCCCCCCHHHHH---HHHCCCC-EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99860446667766677889999---9850254-0342156664323344378999999998637875784
Q T0591           150 VPVQLDYVSADETRAGLDLTGLE---EAFKAGA-RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA  216 (406)
Q Consensus       150 v~v~~~~~~~~~~~~~~d~~~l~---~~~~~~~-k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii~  216 (406)
                      .+|- +         ..+.+..-   +.+.|.. ++-++.+|+++.+    ....+.+-+.+++.|+-++.
T Consensus       109 TGv~-~---------~~~~~~~l~ll~~l~P~~k~igvly~~~~~~~----~~~~~~~~~~a~~~gi~l~~  165 (294)
T PF04392_consen  109 TGVS-E---------PVPVEKQLELLKELLPDAKRIGVLYDPSEPNS----VAQVEELKAAAKELGIELVE  165 (294)
T ss_dssp             E-EE--------------HHHHHHHHHHHSTT--EE-EEE----HHH----HHHHHHHHHHHHH---EEEE
T ss_pred             EEEE-E---------CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHCCCEEEE
T ss_conf             9999-1---------57899999999986878868999978988546----99999999999986987999


No 18 
>PF00128 Alpha-amylase:  Alpha amylase, catalytic domain;  InterPro: IPR006047   O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'.    Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.   This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain .   More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 2dh3_A 2dh2_A 3dhu_D 1gju_A 1gjw_A 3edf_B 3edd_A 3edk_A 3ede_B 3edj_B ....
Probab=62.75  E-value=2.7  Score=17.85  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             CHHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             37899999999863787578417502355
Q T0591           196 SAEEIGQIAALAARYGATVIADQLYSRLR  224 (406)
Q Consensus       196 s~~~l~~i~~~a~~~~~~ii~De~Y~~l~  224 (406)
                      +.++++++++-|+++|+.||.|-++.+..
T Consensus        50 t~~d~~~lv~~~H~~Gi~vi~D~V~NH~~   78 (316)
T PF00128_consen   50 TEDDFKELVDAAHKRGIKVILDVVPNHTS   78 (316)
T ss_dssp             SHHHHHHHHHHHHHTT-EEEEEEETSBEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             38999999999983656499826406655


No 19 
>PF05913 DUF871:  Bacterial protein of unknown function (DUF871);  InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 1x7f_A 2p0o_A.
Probab=60.41  E-value=3.1  Score=17.51  Aligned_cols=20  Identities=20%  Similarity=0.107  Sum_probs=11.5

Q ss_pred             CCHHHHHHHHHHHHHCCCEE
Q ss_conf             43789999999986378757
Q T0591           195 YSAEEIGQIAALAARYGATV  214 (406)
Q Consensus       195 ~s~~~l~~i~~~a~~~~~~i  214 (406)
                      +|.+...+--++.+++|+.+
T Consensus       153 Ls~~~f~~~n~~~k~~gi~t  172 (357)
T PF05913_consen  153 LSLEFFIEKNRWFKEYGIRT  172 (357)
T ss_dssp             --HHHHHHHHHHHHH---EE
T ss_pred             CCHHHHHHHHHHHHHCCCCE
T ss_conf             79999999999999769967


No 20 
>PF04002 DUF2466:  Protein of unknown function (DUF2466);  InterPro: IPR001405 RadC is a DNA repair protein found in many bacteria. They share a region of similarity at the C-terminus that contains two perfectly conserved histidine residues.; GO: 0006281 DNA repair; PDB: 2qlc_H.
Probab=59.96  E-value=3.6  Score=17.00  Aligned_cols=49  Identities=22%  Similarity=0.390  Sum_probs=28.6

Q ss_pred             CCCHHH-HHHHHCCCCEEEECCCCCC-CCCCCC-CHHHH---HHHHHHHHHCCCEEE
Q ss_conf             778899-9998502540342156664-323344-37899---999999863787578
Q T0591           165 GLDLTG-LEEAFKAGARVFLFSNPNN-PAGVVY-SAEEI---GQIAALAARYGATVI  215 (406)
Q Consensus       165 ~~d~~~-l~~~~~~~~k~i~l~~P~N-PTG~~~-s~~~l---~~i~~~a~~~~~~ii  215 (406)
                      ..++-+ ++.+++.+...++++  || |+|..- |.+++   +++.+.++.-|+.++
T Consensus        50 ~v~pReI~~~Al~~~A~~vIl~--HNHPSG~~~PS~~D~~~T~~l~~a~~~l~I~ll  104 (123)
T PF04002_consen   50 SVDPREIFRRALKHNASAVILA--HNHPSGDPEPSQEDIELTRRLKEAGQLLGIRLL  104 (123)
T ss_dssp             GCSHHHHHHHHHHTT-SEEEEE--EE------S--HHHHHHHHHHHH---TTS-EEE
T ss_pred             CCCHHHHHHHHHHHCCCEEEEE--EECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             5258999999998189869999--712689898888899999999999998699798


No 21 
>PF05114 DUF692:  Protein of unknown function (DUF692);  InterPro: IPR007801 This family consists of uncharacterised bacterial proteins.; PDB: 3bww_A.
Probab=59.35  E-value=3.7  Score=16.93  Aligned_cols=63  Identities=25%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             EECCCCCC---CCCCCCCHHHHHHHHHHHHHCCCEEEEC--CCCCCCCCCCCCCCCHHHHHCCCCCCEEEEE
Q ss_conf             42156664---3233443789999999986378757841--7502355688876522332102678689985
Q T0591           182 FLFSNPNN---PAGVVYSAEEIGQIAALAARYGATVIAD--QLYSRLRYAGASYTHLRAEAAVDAENVVTIM  248 (406)
Q Consensus       182 i~l~~P~N---PTG~~~s~~~l~~i~~~a~~~~~~ii~D--e~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~  248 (406)
                      +++-||+-   ..+..|+  +.+-+.+++++.|+.++.|  .+|..-...|..  +.........++|..++
T Consensus       135 lllEN~s~Y~~~~~~~m~--E~eFl~el~~rtgc~LLLDvnNvyvna~N~g~D--p~~yl~~lPlerV~eiH  202 (274)
T PF05114_consen  135 LLLENPSSYLPFPDSEMS--EPEFLAELVERTGCGLLLDVNNVYVNAVNHGFD--PYEYLDRLPLERVVEIH  202 (274)
T ss_dssp             -EEB----S-B-TT-SS---HHHHHHHHHHHHT---EEEHHHHHHHHHH------HHHHHHHS-GGG--EEE
T ss_pred             EEEECHHHHCCCCCCCCC--HHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC--HHHHHHHCCHHHEEEEE
T ss_conf             698370764488857679--999999999973998899722302320107989--99999738997928888


No 22 
>PF03786 UxuA:  D-mannonate dehydratase (UxuA);  InterPro: IPR004628   This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 3dbn_A 3bdk_B 3ban_A 1tz9_A.
Probab=56.46  E-value=2.4  Score=18.28  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=16.4

Q ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             54034215666432334437899999999863787
Q T0591           178 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA  212 (406)
Q Consensus       178 ~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~  212 (406)
                      +...|+-.-+++|.|-+|+.++++++.+.+.++|+
T Consensus        25 G~~gIV~aLh~ip~GevW~~e~I~~~k~~ie~~GL   59 (351)
T PF03786_consen   25 GATGIVTALHDIPNGEVWPLEEIQALKAQIEAAGL   59 (351)
T ss_dssp             -----EE--SSS-------HHHHHHHHHHHHC---
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             97660014878999994899999999999997697


No 23 
>PF04794 YdjC:  YdjC-like protein;  InterPro: IPR006879 This is a family of YdjC-like proteins. It is possibly involved in the the cleavage of cellobiose-phosphate .; PDB: 2e67_C 2i5i_B.
Probab=45.86  E-value=6  Score=15.52  Aligned_cols=51  Identities=20%  Similarity=0.206  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHCCCCEEEEC--CCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             77889999985025403421--566643---2334437899999999863787578
Q T0591           165 GLDLTGLEEAFKAGARVFLF--SNPNNP---AGVVYSAEEIGQIAALAARYGATVI  215 (406)
Q Consensus       165 ~~d~~~l~~~~~~~~k~i~l--~~P~NP---TG~~~s~~~l~~i~~~a~~~~~~ii  215 (406)
                      .++.++++..++.+...+.-  ..|.-=   -+...-+..++.++++++++++.++
T Consensus        98 ~~~~~~v~~El~AQi~~f~~~G~~p~hiD~H~h~h~~p~v~~~~~~~a~~y~lp~~  153 (261)
T PF04794_consen   98 RADPEEVRAELRAQIDRFLAMGIPPDHIDGHQHVHQLPGVRDALLRLAKEYGLPWV  153 (261)
T ss_dssp             C--HHHHHHHHHHHHHHHCCS---ECEEEEGGG-TTSCCCHHHHHHHHHHCT-EB-
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             89999999999999999998198988665565110577799999999998299721


No 24 
>PF11977 RNase_Zc3h12a:  Zc3h12a-like Ribonuclease domain
Probab=41.86  E-value=6.9  Score=15.11  Aligned_cols=91  Identities=18%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHHHHCCH-HHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC-
Q ss_conf             72789999999972001-0101310551389999982996999860446667766677889999985025403421566-
Q T0591           110 TQGALFLAVAATVARGD-KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNP-  187 (406)
Q Consensus       110 ~~~~l~~~~~~l~~pGd-~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P-  187 (406)
                      +..+|..++..|...|- .+++..|.|. +..                    ...-.-+.+.|+++.+.  ..+++ +| 
T Consensus        23 ~~~~i~~~v~~f~~rG~~~i~v~~~~~~-~~~--------------------~~~~~~~~~~L~~L~~~--~~l~~-tP~   78 (155)
T PF11977_consen   23 SCRGIAAAVEYFKKRGHEVIVVFPPNYR-YKK--------------------PDDKSDNQHLLEKLIRL--GLLYF-TPS   78 (155)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECHHH-HCC--------------------CCCCCCCHHHHHHHHHC--CEEEE-ECC
T ss_conf             9899999999999859984799904132-024--------------------66888729999999878--94998-079


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf             -64323344378999999998637875784175023556
Q T0591           188 -NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY  225 (406)
Q Consensus       188 -~NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~~  225 (406)
                       +|+.....+-++ .-|+++|.+.+..||+-|=|.+..+
T Consensus        79 ~~~~g~~~~~ydD-~~iL~~A~~~~~~IVSND~~RD~~~  116 (155)
T PF11977_consen   79 GSNDGSRIRCYDD-RYILYAAEEKDGVIVSNDRYRDHRF  116 (155)
T ss_pred             CCCCCCCCCCCCH-HHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf             9876763321247-9999999982988980717888875


No 25 
>PF04016 DUF364:  Domain of unknown function (DUF364);  InterPro: IPR007161   This is a family of bacterial and archaeal proteins of unknown function.
Probab=40.48  E-value=7.3  Score=14.97  Aligned_cols=86  Identities=21%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             HHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Q ss_conf             72001010131055138999998299699986044666776667788999998502540342156664323344378999
Q T0591           122 VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIG  201 (406)
Q Consensus       122 ~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~  201 (406)
                      ..+|++|.+.-- |..+...++..|.++.-+.++........... .+.....+-+...++++      ||+++-...+.
T Consensus       109 ~~~~~kV~vVG~-~~P~v~~l~~~g~~~~v~e~~~~~~~~~~~~~-~~~~~~~~l~~~D~v~i------TGsTlvN~Tl~  180 (232)
T PF04016_consen  109 IYPGKKVAVVGY-FQPIVKRLRERGAELRVLERNPENIGPQEGDL-PDEAAEELLPWADVVLI------TGSTLVNGTLD  180 (232)
T ss_pred             CCCCCEEEEECC-CCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHCCCCEEEE------EECCEECCCHH
T ss_conf             479998999917-71889999863995799978875456666787-72677776344888999------96730228999


Q ss_pred             HHHHHHHHCCCEEE
Q ss_conf             99999863787578
Q T0591           202 QIAALAARYGATVI  215 (406)
Q Consensus       202 ~i~~~a~~~~~~ii  215 (406)
                      +|++.|++....++
T Consensus       181 ~lL~~~~~~~~vvl  194 (232)
T PF04016_consen  181 RLLALAKRAAPVVL  194 (232)
T ss_pred             HHHHHCCCCCEEEE
T ss_conf             99973866885999


No 26 
>PF10609 ParA:  ParA/MinD ATPase like; PDB: 2ph1_A.
Probab=37.18  E-value=8.2  Score=14.63  Aligned_cols=34  Identities=3%  Similarity=0.209  Sum_probs=26.6

Q ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             254034215666432334437899999999863787578
Q T0591           177 AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI  215 (406)
Q Consensus       177 ~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~ii  215 (406)
                      +...++++++|++     ++..+.++.++++++.++.|+
T Consensus        24 ~~~g~iiVTTPq~-----~a~~dv~r~i~~~~k~~ipil   57 (81)
T PF10609_consen   24 PIDGAIIVTTPQE-----VALADVRRAIDMFRKLNIPIL   57 (81)
T ss_dssp             -----EEEE-SSS-------HHHHHHHHHHHHTTT----
T ss_pred             CCCEEEEEECCHH-----HHHHHHHHHHHHHHHCCCCEE
T ss_conf             8860999979838-----899999999999997399679


No 27 
>PF00150 Cellulase:  Cellulase (glycosyl hydrolase family 5);  InterPro: IPR001547   O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'.   Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC).   The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A  or as the glycosyl hydrolases family 5 . One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved  in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1h1n_B 1gzj_B 2whj_A 2whl_A 1wky_A 3man_A 1bqc_A 2man_A 1vrx_A 1ece_A ....
Probab=36.90  E-value=8.2  Score=14.60  Aligned_cols=11  Identities=9%  Similarity=-0.091  Sum_probs=4.3

Q ss_pred             HHCCEEEEEEE
Q ss_conf             82996999860
Q T0591           144 FFEGEMVPVQL  154 (406)
Q Consensus       144 ~~g~~~v~v~~  154 (406)
                      ..|++.|.+|+
T Consensus        37 ~~G~n~VRipv   47 (287)
T PF00150_consen   37 AAGFNTVRIPV   47 (287)
T ss_dssp             HHHHHEEEEEE
T ss_pred             HHCCCEEEECC
T ss_conf             82999898781


No 28 
>PF02679 ComA:  (2R)-phospho-3-sulfolactate synthase (ComA);  InterPro: IPR003830   Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds . Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria.   Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) . Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate , which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) . Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde . Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1u83_A 1qwg_A.
Probab=33.04  E-value=7.9  Score=14.74  Aligned_cols=50  Identities=10%  Similarity=0.141  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEEE
Q ss_conf             8999999999986488678867078824872789999999972001010131055138999998299699986
Q T0591            81 GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQ  153 (406)
Q Consensus        81 ~Lr~aia~~~~~~~g~~~~~~~~I~it~G~~~~l~~~~~~l~~pGd~Vl~~~P~y~~~~~~~~~~g~~~v~v~  153 (406)
                      .||+.|.-  .+.+        +|.+..|++-     +..+..+|        .+..|...++..|++.+.+-
T Consensus        55 ~l~eki~l--~~~~--------~V~v~~GGtl-----fe~~~~~~--------~~~~y~~~~k~lGf~~iEiS  104 (244)
T PF02679_consen   55 ILREKIDL--AHDH--------GVYVYTGGTL-----FEIAISQG--------KFDEYLRECKDLGFDAIEIS  104 (244)
T ss_dssp             HHHHHHHH--HHCT--------T-EEE----H-----HHHHHHTT---------HHHHHHHHHH----EEEE-
T ss_pred             HHHHHHHH--HHHC--------CCEEECCCHH-----HHHHHHCC--------HHHHHHHHHHHCCCCEEEEC
T ss_conf             99999999--9986--------9817079549-----99998207--------49999999998599789975


No 29 
>PF03460 NIR_SIR_ferr:  Nitrite/Sulfite reductase ferredoxin-like half domain;  InterPro: IPR005117   Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure . SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite.   SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity . This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity; PDB: 2v4j_D 3c7b_D 5aop_A 6gep_A 1aop_A 2gep_A 3geo_A 4aop_A 7gep_A 8gep_A ....
Probab=32.09  E-value=9.7  Score=14.13  Aligned_cols=21  Identities=38%  Similarity=0.860  Sum_probs=13.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3233443789999999986378
Q T0591           190 PAGVVYSAEEIGQIAALAARYG  211 (406)
Q Consensus       190 PTG~~~s~~~l~~i~~~a~~~~  211 (406)
                      |.|.+ +.+.++.|++++++|+
T Consensus        17 ~~G~l-t~~~l~~la~ia~~yg   37 (69)
T PF03460_consen   17 PGGRL-TAEQLRKLADIAEKYG   37 (69)
T ss_dssp             --SCB-EHHHHHHHHHHHHHHS
T ss_pred             CCEEE-CHHHHHHHHHHHHHCC
T ss_conf             88898-9999999999999658


No 30 
>PF08886 GshA:  Glutamate-cysteine ligase;  InterPro: IPR011718   This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=30.53  E-value=10  Score=13.92  Aligned_cols=73  Identities=16%  Similarity=0.209  Sum_probs=29.3

Q ss_pred             HHHCCEEEEEEECCCCCCCCCCCCCHHHHH-----HHHC---CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             982996999860446667766677889999-----9850---25403421566643233443789999999986378757
Q T0591           143 EFFEGEMVPVQLDYVSADETRAGLDLTGLE-----EAFK---AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATV  214 (406)
Q Consensus       143 ~~~g~~~v~v~~~~~~~~~~~~~~d~~~l~-----~~~~---~~~k~i~l~~P~NPTG~~~s~~~l~~i~~~a~~~~~~i  214 (406)
                      +.+|+++.||.....+..=++..++...|.     +++.   +..|-++| -|-|-|-..+=.+-+..|.++.++.|+-+
T Consensus        33 RNaGfKlAPVDtNLFPaGfNNL~~~~~plavqa~~~aiek~cp~a~~iLl-IpEnHTRN~fYl~nv~~L~~I~~~AG~~V  111 (404)
T PF08886_consen   33 RNAGFKLAPVDTNLFPAGFNNLNPEFLPLAVQAAMAAIEKICPEAKNILL-IPENHTRNTFYLENVAALKRILRQAGFNV  111 (404)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             24686216653556765103688678999999999999986825241899-32766621889999999999999759558


Q ss_pred             EE
Q ss_conf             84
Q T0591           215 IA  216 (406)
Q Consensus       215 i~  216 (406)
                      -+
T Consensus       112 ri  113 (404)
T PF08886_consen  112 RI  113 (404)
T ss_pred             EE
T ss_conf             96


No 31 
>PF07745 Glyco_hydro_53:  Glycosyl hydrolase family 53;  InterPro: IPR011683   O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. This domain is found in family 53 of the glycosyl hydrolase classification . These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known  and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 2gft_A 1r8l_B 2j74_A 1ur4_B 1ur0_A 2ccr_A 1hjq_A 1hju_A 1hjs_C 1fob_A ....
Probab=29.81  E-value=11  Score=13.84  Aligned_cols=37  Identities=27%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             CCCCC-CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf             64323-34437899999999863787578417502355
Q T0591           188 NNPAG-VVYSAEEIGQIAALAARYGATVIADQLYSRLR  224 (406)
Q Consensus       188 ~NPTG-~~~s~~~l~~i~~~a~~~~~~ii~De~Y~~l~  224 (406)
                      +||+. .....+...++++-|++.|.-|+.|-=|+++.
T Consensus        47 vnP~~~G~~dl~~~~~~AkrAk~~GmkvllDFHYSD~W   84 (332)
T PF07745_consen   47 VNPYDGGYNDLEDVLKLAKRAKAAGMKVLLDFHYSDFW   84 (332)
T ss_dssp             SS-S-----SHHHHHHHHHHHHH---EEEEEE-SSSS-
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             77764455778999999999998699599976013467


No 32 
>PF02662 FlpD:  Methyl-viologen-reducing hydrogenase, delta subunit;  InterPro: IPR003813   Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) . No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis
Probab=28.97  E-value=11  Score=13.75  Aligned_cols=56  Identities=18%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEC--CCC---CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             96999860446667766677889999985025403421--566---64323344378999999998637
Q T0591           147 GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF--SNP---NNPAGVVYSAEEIGQIAALAARY  210 (406)
Q Consensus       147 ~~~v~v~~~~~~~~~~~~~~d~~~l~~~~~~~~k~i~l--~~P---~NPTG~~~s~~~l~~i~~~a~~~  210 (406)
                      .+++.||+.        ..+|+.-+.+++..+...+++  |.|   |+.+|..+...+...+-++..+-
T Consensus        29 vriIrVpC~--------GrV~~~~il~A~~~GADGV~v~GC~~gdChy~~Gn~~a~~Rv~~~~~~L~~~   89 (124)
T PF02662_consen   29 VRIIRVPCS--------GRVDPSFILDAFEKGADGVLVAGCHPGDCHYLKGNYWARRRVARAKKLLEEL   89 (124)
T ss_pred             EEEEECCCC--------CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             389971577--------7669999999998399989995889987817554699999999999999980


No 33 
>PF00448 SRP54:  SRP54-type protein, GTPase domain;  InterPro: IPR000897    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins .   These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homolog of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0016020 membrane; PDB: 2q9a_A 2q9c_B 2cnw_F 2q9b_B 2iyl_D 1rj9_A 1okk_D 2j7p_E 2px0_A 2px3_A ....
Probab=28.66  E-value=11  Score=13.71  Aligned_cols=43  Identities=12%  Similarity=0.159  Sum_probs=22.6

Q ss_pred             CCCEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf             254034215666-43233443789999999986378757841750
Q T0591           177 AGARVFLFSNPN-NPAGVVYSAEEIGQIAALAARYGATVIADQLY  220 (406)
Q Consensus       177 ~~~k~i~l~~P~-NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y  220 (406)
                      .+...+++-+|. ||.-. --.++++++.+.+....++++.|-..
T Consensus        82 ~~~d~VLIDTaGr~~~~~-~~~~el~~~~~~~~~~~~~LVlsa~~  125 (196)
T PF00448_consen   82 RGFDLVLIDTAGRSPRDE-ELMEELRKLLRVIEPDEVLLVLSATT  125 (196)
T ss_dssp             TTSSEEEEEE-S-GSTHH-HHHHHHHHHHHHHTTSEEEEEEETTB
T ss_pred             CCCCEEEEECCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             799999996888775769-99999999841169987999963655


No 34 
>PF01791 DeoC:  DeoC/LacD family aldolase;  InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 1o0y_A 1n7k_A 1to3_A 2qjh_T 2qji_N 2qjg_N 1w8r_D 1w8s_I 1ojx_J 1ok6_G ....
Probab=25.31  E-value=13  Score=13.32  Aligned_cols=52  Identities=27%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             HHHHHHHHCCCCEEEE-CCCCC--CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf             8999998502540342-15666--43233443789999999986378757841750
Q T0591           168 LTGLEEAFKAGARVFL-FSNPN--NPAGVVYSAEEIGQIAALAARYGATVIADQLY  220 (406)
Q Consensus       168 ~~~l~~~~~~~~k~i~-l~~P~--NPTG~~~s~~~l~~i~~~a~~~~~~ii~De~Y  220 (406)
                      ..+.+.+++.+...+- +.|+.  .+--...-.+++.++.+.|+++++.+|.- .|
T Consensus        79 ~~~v~~A~~~GAdevd~v~~~~~~~s~~~~~~~~ei~~v~~~~~~~~l~vIlE-~~  133 (236)
T PF01791_consen   79 VAEVEEAVRLGADEVDVVVNIGALGSGDEDEVLEEIAEVVEECRRWGLKVILE-GY  133 (236)
T ss_dssp             HHHHHHHHHTT-SEEEEEEEHHHHTTTTHHHHHHHHHHHHHHHHTSEEEEEEE-GG
T ss_pred             HHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-EE
T ss_conf             89999999869986456646631167649999999999999985279889999-93


No 35 
>PF08543 Phos_pyr_kin:  Phosphomethylpyrimidine kinase;  InterPro: IPR013749   This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes . ; PDB: 1ub0_A 2ddw_A 2ddo_B 2ddm_A 1vi9_C 1td2_B 3h74_A 3hyo_A 2i5b_A 2php_D ....
Probab=25.14  E-value=13  Score=13.30  Aligned_cols=12  Identities=17%  Similarity=0.086  Sum_probs=5.0

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             988999999999
Q T0591            79 DLGIRDLLAPRL   90 (406)
Q Consensus        79 ~~~Lr~aia~~~   90 (406)
                      ..+.-+.|++|+
T Consensus        71 s~~~i~~v~~~l   82 (246)
T PF08543_consen   71 SAEQIEVVADFL   82 (246)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             879999999998


No 36 
>PF12138 Spherulin4:  Spherulation-specific family 4
Probab=22.27  E-value=15  Score=12.93  Aligned_cols=48  Identities=23%  Similarity=0.248  Sum_probs=23.8

Q ss_pred             HHHHHHHHCC--CCEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHCCCEEE
Q ss_conf             8999998502--54034215666432334----437899999999863787578
Q T0591           168 LTGLEEAFKA--GARVFLFSNPNNPAGVV----YSAEEIGQIAALAARYGATVI  215 (406)
Q Consensus       168 ~~~l~~~~~~--~~k~i~l~~P~NPTG~~----~s~~~l~~i~~~a~~~~~~ii  215 (406)
                      ++.|..++..  .....+|.||+|=-|..    ....-.++|-++-+..|+.+|
T Consensus        18 W~~L~~~i~~~p~~~~~vIiNP~~GPG~~~~~~pd~~y~~ai~~L~~~~nv~vl   71 (251)
T PF12138_consen   18 WDPLYDAITAYPDVQFTVIINPNNGPGSSPEYLPDPNYTAAIPRLNRYANVRVL   71 (251)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf             278887764289986899987898998666778877899998876315787069


No 37 
>PF01408 GFO_IDH_MocA:  Oxidoreductase family, NAD-binding Rossmann fold;  InterPro: IPR000683   This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis.    The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 3cea_A 3ec7_D 3euw_A 3ezy_B 3e18_A 2p2s_A 3dty_B 1tlt_B 1xea_D 3bio_A ....
Probab=20.81  E-value=16  Score=12.74  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=11.2

Q ss_pred             CHHHHHHHHHHHHHCCCEEEE
Q ss_conf             378999999998637875784
Q T0591           196 SAEEIGQIAALAARYGATVIA  216 (406)
Q Consensus       196 s~~~l~~i~~~a~~~~~~ii~  216 (406)
                      +.++.++|++.+++++..+.+
T Consensus        98 ~~~e~~~l~~~a~~~~~~~~v  118 (120)
T PF01408_consen   98 SLEEAEELLEAAKKKGVIVMV  118 (120)
T ss_dssp             SHHHHHHHHHHHHHTTTCEEE
T ss_pred             CHHHHHHHHHHHHHHCCEEEE
T ss_conf             999999999999980997998


Done!