Query T0593 3NGW, Archaeoglobus fulgidus, 208 residues Match_columns 208 No_of_seqs 108 out of 6539 Neff 10.4 Searched_HMMs 22458 Date Mon Jul 5 09:09:13 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0593.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0593.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2e8b_A Probable molybdopterin- 100.0 6.1E-33 2.7E-37 207.4 12.6 182 2-193 16-199 (201) 2 1e5k_A Molybdopterin-guanine d 100.0 4.4E-31 2E-35 196.7 15.2 183 1-190 7-192 (201) 3 3d5n_A Q97W15_sulso; NESG, SSR 100.0 1.2E-30 5.4E-35 194.2 13.5 184 1-193 1-189 (197) 4 2waw_A MOBA relate protein; un 100.0 1.3E-29 5.9E-34 188.2 17.3 185 1-195 6-198 (199) 5 2wee_A MOBA-related protein; u 100.0 1.2E-28 5.4E-33 182.7 15.7 179 2-190 7-193 (197) 6 1w77_A 2C-methyl-D-erythritol 99.9 2.1E-24 9.3E-29 158.4 15.5 190 1-195 5-227 (228) 7 2px7_A 2-C-methyl-D-erythritol 99.9 2E-24 8.7E-29 158.5 11.2 183 1-196 24-235 (236) 8 1ezi_A CMP-N-acetylneuraminic 99.9 3.8E-25 1.7E-29 162.6 5.8 191 3-196 7-227 (228) 9 1vpa_A 2-C-methyl-D-erythritol 99.9 1.2E-23 5.4E-28 154.0 13.2 185 1-196 13-231 (234) 10 3f1c_A Putative 2-C-methyl-D-e 99.9 6.3E-23 2.8E-27 149.9 15.1 196 2-201 5-241 (246) 11 1i52_A 4-diphosphocytidyl-2-C- 99.9 8.3E-23 3.7E-27 149.2 13.3 192 2-198 9-233 (236) 12 1vgw_A 4-diphosphocytidyl-2C-m 99.9 6.4E-23 2.9E-27 149.8 12.4 185 3-194 9-230 (231) 13 1jyk_A LICC protein, CTP:phosp 99.9 1.2E-23 5.4E-28 154.0 5.9 189 1-195 26-253 (254) 14 2dpw_A Hypothetical protein TT 99.9 6.7E-21 3E-25 138.3 13.7 110 2-117 4-118 (232) 15 3hl3_A Glucose-1-phosphate thy 99.9 5.5E-21 2.4E-25 138.8 12.1 189 1-196 25-261 (269) 16 1w55_A ISPD/ISPF bifunctional 99.8 2.6E-21 1.1E-25 140.7 9.4 183 1-190 4-203 (371) 17 2vsh_A TARI, 2-C-methyl-D-eryt 99.8 9.9E-20 4.4E-24 131.5 13.6 47 1-47 3-52 (236) 18 3juk_A UDP-glucose pyrophospho 99.8 1.8E-19 8.1E-24 130.0 14.8 195 1-200 3-277 (281) 19 1mc3_A Glucose-1-phosphate thy 99.8 1.1E-20 4.8E-25 137.1 8.0 191 1-196 4-244 (296) 20 1lvw_A Glucose-1-phosphate thy 99.8 5.8E-20 2.6E-24 132.9 11.4 192 1-197 4-245 (295) 21 2ux8_A Glucose-1-phosphate uri 99.8 5.8E-20 2.6E-24 132.9 10.8 193 1-198 15-283 (297) 22 1tzf_A Glucose-1-phosphate cyt 99.8 1.3E-19 5.6E-24 131.0 11.0 55 1-55 3-62 (259) 23 2pa4_A UTP-glucose-1-phosphate 99.8 1.1E-18 4.9E-23 125.5 14.7 186 1-190 13-278 (323) 24 2e3d_A UTP--glucose-1-phosphat 99.8 2.9E-18 1.3E-22 123.1 11.5 184 2-190 10-277 (302) 25 1fxo_A Glucose-1-phosphate thy 99.8 2.5E-18 1.1E-22 123.5 9.9 193 1-197 3-244 (293) 26 2ggo_A 401AA long hypothetical 99.7 4.3E-18 1.9E-22 122.1 9.3 188 1-195 1-225 (401) 27 1vic_A 3-deoxy-manno-octuloson 99.7 6.5E-17 2.9E-21 115.4 15.2 194 2-200 4-259 (262) 28 2v0h_A Bifunctional protein GL 99.7 2.2E-17 9.6E-22 118.1 12.2 116 1-116 6-129 (456) 29 3dk5_A Bifunctional protein GL 99.7 5.4E-17 2.4E-21 115.8 12.7 116 2-117 8-139 (495) 30 3k8d_A 3-deoxy-manno-octuloson 99.7 1.4E-16 6.4E-21 113.4 14.3 113 2-115 20-139 (264) 31 1hv9_A UDP-N-acetylglucosamine 99.7 4.9E-17 2.2E-21 116.1 11.9 116 1-116 6-129 (456) 32 1h7e_A 3-deoxy-manno-octuloson 99.7 8E-16 3.5E-20 109.1 14.9 113 2-115 4-121 (245) 33 1qwj_A Cytidine monophospho-N- 99.7 2E-16 9E-21 112.5 11.7 190 1-196 4-224 (229) 34 1hm9_A GLMU, UDP-N-acetylgluco 99.7 4.9E-16 2.2E-20 110.3 12.1 116 2-117 13-136 (468) 35 1yp2_A Glucose-1-phosphate ade 99.7 1.9E-16 8.5E-21 112.7 8.5 114 1-116 21-167 (451) 36 3brk_X Glucose-1-phosphate ade 99.6 4.9E-15 2.2E-19 104.6 7.0 114 1-116 13-157 (420) 37 2cu2_A Putative mannose-1-phos 99.5 2.7E-13 1.2E-17 94.6 10.8 116 1-117 1-137 (337) 38 2qh5_A PMI, ALGA, mannose-6-ph 99.4 8.7E-13 3.9E-17 91.7 10.8 117 1-117 5-141 (308) 39 2i5e_A Hypothetical protein MM 98.4 1.7E-06 7.6E-11 55.5 8.5 172 1-188 4-181 (211) 40 3cgx_A Putative nucleotide-dip 98.3 2.5E-06 1.1E-10 54.5 8.2 101 26-127 37-146 (242) 41 2icy_A Probable UTP-glucose-1- 97.9 6E-06 2.7E-10 52.4 4.0 47 3-49 82-137 (469) 42 2i5k_A UTP--glucose-1-phosphat 97.9 5.5E-06 2.4E-10 52.6 3.6 46 3-48 95-149 (488) 43 3gue_A UTP-glucose-1-phosphate 97.9 1E-05 4.5E-10 51.1 4.6 46 3-48 79-133 (484) 44 2oeg_A UTP-glucose-1-phosphate 97.9 1.1E-05 4.9E-10 50.9 4.3 46 3-48 78-132 (505) 45 1jv1_A Glcnac1P uridyltransfer 97.8 2.2E-05 9.9E-10 49.1 4.9 36 2-37 104-144 (505) 46 2yqc_A UDP-N-acetylglucosamine 97.7 3.4E-05 1.5E-09 48.1 4.4 36 2-37 105-145 (486) 47 3bcv_A Putative glycosyltransf 45.7 13 0.00058 16.0 8.5 94 24-117 15-118 (240) 48 3ckj_A Putative uncharacterize 32.3 21 0.00095 14.8 6.7 97 21-117 54-166 (329) 49 1j2j_B ADP-ribosylation factor 28.8 25 0.0011 14.4 2.5 23 176-198 16-38 (45) 50 1jkx_A GART;, phosphoribosylgl 24.0 24 0.0011 14.5 1.5 88 1-103 1-99 (212) 51 3d0o_A L-LDH 1, L-lactate dehy 22.3 33 0.0015 13.7 1.8 40 2-42 76-116 (317) 52 2fb9_A D-alanine:D-alanine lig 20.9 27 0.0012 14.2 1.1 12 1-12 4-15 (322) No 1 >2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein A; putative protein, molybdenum cofactor, structural genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5} Probab=100.00 E-value=6.1e-33 Score=207.40 Aligned_cols=182 Identities=24% Similarity=0.301 Sum_probs=146.4 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHH Q ss_conf 17886488753566697602667843798999999726872078725213344431010000023441236778888775 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALR 81 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208) ++||||||+|||||+||+|++++|+|||+|+++.+++....++|++..... .......+..+..++.+++.++.+++. T Consensus 16 ~~vILAgG~ssRmg~~K~ll~i~Gkpli~~vi~~l~~~~~~iiVv~~~~~~--~~~~~~~~i~d~~~~~G~~~~i~~~l~ 93 (201) T 2e8b_A 16 TCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSVFKEVYIVAKDREK--FSFLNAPVVLDEFEESASIIGLYTALK 93 (201) T ss_dssp EEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCSGG--GGGGTCCEEECCCSSCCHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCEECCEECCEEHHHHHHHHHHHCCCEEEEEECCHHH--HHHHCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 799989944630899915348999978999998865207527998311665--333226543453334680799999987 Q ss_pred HC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCEE Q ss_conf 04--9789982788768889999999998507987999738923202210006789999999871205789999752612 Q T0593 82 HF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPLERLNVV 159 (208) Q Consensus 82 ~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 159 (208) .. +.+++++||+||++++.++.+++.+. ..+++...++.+|++++|++++++.+...+.+|++++..+++..... T Consensus 94 ~~~~~~~lv~~~D~P~i~~~~i~~li~~~~---~~~~~~~~~~~~pl~~~y~~~~~~~l~~~l~~g~~~~~~~l~~~~~~ 170 (201) T 2e8b_A 94 HAKEENVFVLSGDLPLMKKETVLYVLENFK---EPVSVAKTEKLHTLVGVYSKKLLEKIEERIKKGDYRIWALLKDVGYN 170 (201) T ss_dssp HCSSSEEEEEETTCTTCCHHHHHHHHHTCC---SSEEEEESSSEEEEEEEEEGGGHHHHHHHHHTTCCCHHHHHHHHCCE T ss_pred HCCCCEEEEEECCCCCCCHHHHHHHHHHCC---CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCE T ss_conf 423652899726778798999999997187---65467568973200022289999999999983992489999878977 Q ss_pred EECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH Q ss_conf 3214501442286442036989899999999999 Q T0593 160 YYPVEKLRKFDKELISFFNINTPDDLKRAEEICS 193 (208) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~ 193 (208) .+.. .......|+||||||||++++++.+ T Consensus 171 ~i~~-----~~~~~~~~~ninT~eDl~~~~~i~n 199 (201) T 2e8b_A 171 EVEI-----PEELRYTLLNMNTKEDLKRILAIEN 199 (201) T ss_dssp EEEC-----CGGGGGGGCCSCCC----------- T ss_pred EEEC-----CCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9978-----6787670018999999999998875 No 2 >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Probab=99.97 E-value=4.4e-31 Score=196.73 Aligned_cols=183 Identities=21% Similarity=0.279 Sum_probs=141.2 Q ss_pred CEEEEECCCCCCCCCC-CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHHHH Q ss_conf 9178864887535666-976026678437989999997268720787252133444310100000234412367788887 Q T0593 1 MKVAVLVGGVGRRIGM-EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHAA 79 (208) Q Consensus 1 m~~vIlAaG~gtRlg~-pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208) |+|||||||+|||||+ ||+|++|+|+|||+|++++++..+...++++....+..................+...+.... T Consensus 7 ~~aiILAaG~gsRmg~~pK~ll~i~G~pll~~~i~~l~~~~~~~~vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201) T 1e5k_A 7 ITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSV 86 (201) T ss_dssp EEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHHHCSCEEEECSSSHHHHHTTSCCEECCCTTCCCSHHHHHHHH T ss_pred CEEEEECCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHH T ss_conf 22899888877689898915425899889999999974228825886067699875402564202116887414799998 Q ss_pred H--HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCC Q ss_conf 7--50497899827887688899999999985079879997389232022100067899999998712057899997526 Q T0593 80 L--RHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPLERLN 157 (208) Q Consensus 80 ~--~~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 157 (208) + ...+.++++.+|+||+.++.++++++.+.+. ..++....+...+..+.+.+...+.+..++.+|.++++.++.... T Consensus 87 ~~~~~~~~~~v~~~D~p~~~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~l~~~~~~~~ 165 (201) T 1e5k_A 87 MQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDA-PVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMVFMRLAG 165 (201) T ss_dssp HHHCCSSEEEEEETTCTTCCTTHHHHHHHTCTTC-SEEEEECSSCEEEEEEEEETTHHHHHHHHHHTTCCCHHHHHHHTT T ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCC-CEEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCHHHHHHHCC T ss_conf 6761378089994898668899999999842799-989995089436756786388999999999847830999998779 Q ss_pred EEEECCCCEEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf 123214501442286442036989899999999 Q T0593 158 VVYYPVEKLRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) ...+. +......|+||||||||++|++ T Consensus 166 ~~~v~------~~~~~~~~~dIdTpeDl~~~~~ 192 (201) T 1e5k_A 166 GHAVD------FSDHKDAFVNVNTPEELARWQE 192 (201) T ss_dssp CEEEE------CTTSTTTTCCCCSHHHHHTTC- T ss_pred CCEEE------EECCCCCCCCCCCHHHHHHHHH T ss_conf 81899------8589661529397999999998 No 3 >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Probab=99.97 E-value=1.2e-30 Score=194.20 Aligned_cols=184 Identities=20% Similarity=0.279 Sum_probs=131.5 Q ss_pred CE--EEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHHH Q ss_conf 91--7886488753566697602667843798999999726872078725213344431010000023441236778888 Q T0593 1 MK--VAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHA 78 (208) Q Consensus 1 m~--~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208) || |||||||+|||||+||+|++++|||||+|++++++......+++... .+..................+...++.. T Consensus 1 Mk~~avIlAgG~ssRmg~~K~ll~i~G~pli~~~i~~l~~~~~~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (197) T 3d5n_A 1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYV-NEMLPLLMDQIVIYNPFWNEGISTSLKL 79 (197) T ss_dssp CCEEEEEECSCCTTCCCSSGGGSBSSSSBHHHHHHHHTTTSBCCEEECTTH-HHHGGGCTTSCEEECTTGGGCHHHHHHH T ss_pred CCCEEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHCCCCEEEEECCH-HHHHHHHCCCCCEECCCCCCCCHHHHHH T ss_conf 973199989956654968972069999889999999821789759991688-9999874276502213334771899999 Q ss_pred HHHH---CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 7750---4978998278876888999999999850798799973892320221000678999999987120578999975 Q T0593 79 ALRH---FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPLER 155 (208) Q Consensus 79 ~~~~---~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 155 (208) ++.. .+.++++.+|+|+++++.++++++.+.+++..++....+ ....+.++++++++.+..+ .++.+.+.++.. T Consensus 80 al~~~~~~~~~lv~~~D~P~i~~~~i~~ll~~~~~~~~~v~~~~~g-~~~~P~~~~~~~~~~l~~~--~~~~~~~~~l~~ 156 (197) T 3d5n_A 80 GLRFFKDYDAVLVALGDMPFVTKEDVNKIINTFKPNCKAVIPTHKG-ERGNPVLISKSLFNEIEKL--RGDVGARVILNK 156 (197) T ss_dssp HHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTCCTTCSEEEEEETT-EECSCEEEEHHHHHHHHHC--CTTCCTHHHHTT T ss_pred HHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC-CCCCCEEECHHHHHHHHHH--CCCHHHHHHHHH T ss_conf 9862346773454368857789999999999764179889999789-5267318879999999874--024159999986 Q ss_pred CCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH Q ss_conf 26123214501442286442036989899999999999 Q T0593 156 LNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICS 193 (208) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~ 193 (208) .. ...+.....+...|+||||||||+++++++. T Consensus 157 ~~-----~~~~~~~~~~~~~~~dIdTpeDl~~l~~~~~ 189 (197) T 3d5n_A 157 IK-----IEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197) T ss_dssp SC-----GGGEEEEECCGGGTCCTTTC----------- T ss_pred CC-----CCCEEEEECCCCCEECCCCHHHHHHHHHHCC T ss_conf 76-----5748998279782778999999999984569 No 4 >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Probab=99.97 E-value=1.3e-29 Score=188.23 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=132.2 Q ss_pred CEEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHHCCCEEECCCCCHHHHHHH Q ss_conf 9178864887535666976026678437989999997268720787252133444----310100000234412367788 Q T0593 1 MKVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLS----SRYEAEFIWDLHKGVGSIAGI 76 (208) Q Consensus 1 m~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 76 (208) +.|||||||+|||||+||+|++++|+|||+|+++++...+...++++.++..... ......+........++..++ T Consensus 6 i~aiIlAgG~s~R~G~~K~ll~i~g~~li~~~i~~~~~~~~~~iiVv~~~~~~~i~~~~~~~~~~~i~~~~~~~G~~~si 85 (199) T 2waw_A 6 VTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCSSSL 85 (199) T ss_dssp EEEEEEESSCCTTTTSCGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCCCHH T ss_pred EEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCH T ss_conf 28999679887159789602189995299999998636464058873376188998665311321122334555765206 Q ss_pred HHHHHHC----CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHH Q ss_conf 8877504----978998278876888999999999850798799973892320221000678999999987120578999 Q T0593 77 HAALRHF----GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVP 152 (208) Q Consensus 77 ~~~~~~~----~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 152 (208) ..++... +.+++++||+||++++.++++++.+.++...++...++..+| .++++++++.+.+. .|+.+++.+ T Consensus 86 ~~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~v~~~~~~~g~P--~l~~~~~~~~l~~l--~~d~g~r~~ 161 (199) T 2waw_A 86 KSALTWVDPTAEGIVLMLGDQPGITASAVASLIAGGRGATIAVCEYANGIGHP--FWVSRGVFGDLAEL--HGDKGVWRL 161 (199) T ss_dssp HHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHTTCSEEEEEETTEEEEE--EEEEGGGHHHHHTC--SSTTCHHHH T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC--EEECHHHHHHHHHC--CCCCCHHHH T ss_conf 78888641456734997686168999999999984789987999879921687--78889999999851--277368999 Q ss_pred HHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 9752612321450144228644203698989999999999971 Q T0593 153 LERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKM 195 (208) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~ 195 (208) +..... .+..+..+...|+||||||||+++.+.+.+. T Consensus 162 ~~~~~~------~~~~v~~d~~~~~didTpeDl~~l~~~~~r~ 198 (199) T 2waw_A 162 IESGRH------GVRRIRVDADVPLDVDTWDDYERLLASVVRL 198 (199) T ss_dssp HHSSSS------CEEEEECSSCCCCCCSSHHHHHHHHHHHHHT T ss_pred HHHCCC------CEEEEECCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 984938------7799978988005799999999998652567 No 5 >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A Probab=99.96 E-value=1.2e-28 Score=182.71 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=127.4 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHHCCCEEECCCCCHHHHHHHH Q ss_conf 178864887535666976026678437989999997268720787252133444----3101000002344123677888 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLS----SRYEAEFIWDLHKGVGSIAGIH 77 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 77 (208) .+||||||+|||||+||+|++++|+|||+|+++++.+.+...++++.++..... ......+........+...++. T Consensus 7 ~~vILAgG~s~Rmg~~K~ll~~~g~~li~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~~~~v~~~~~~~G~~~si~ 86 (197) T 2wee_A 7 TGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCAASLR 86 (197) T ss_dssp EEEEEECCCCTTTSSCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH T ss_conf 69998998871596897401889990899999999864054133025742123212212432211112344567542045 Q ss_pred HHHHHC----CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 877504----9789982788768889999999998507987999738923202210006789999999871205789999 Q T0593 78 AALRHF----GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPL 153 (208) Q Consensus 78 ~~~~~~----~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 153 (208) .++... +.++++.||+||++++.++++++.+.+....++....++.+| .+|.+.+++.+... .|+.+++.++ T Consensus 87 ~~l~~l~~~~~~~lv~~~D~P~l~~~~i~~Li~~~~~~~~~v~~~~~~~g~P--~~~~~~~~~~l~~~--~gd~g~~~~~ 162 (197) T 2wee_A 87 VALARVHPRATGIVLMLGDQPQVAPATLRRIIDVGPATEIMVCRYADGVGHP--FWFSRTVFGELARL--HGDKGVWKLV 162 (197) T ss_dssp HHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHHGGGSSEEEEEETTEEEEE--EEEEGGGHHHHHTC--CSTTHHHHHH T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC--EEECHHHHHHHHHH--CCCCCHHHHH T ss_conf 5553312466604786176056899999999984478983999976865781--38789999999963--3783679999 Q ss_pred HHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf 7526123214501442286442036989899999999 Q T0593 154 ERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) ..... ....+..+...++||||||||+++.+ T Consensus 163 ~~~~~------~~~~v~~d~~~~~dinTpeDl~~l~~ 193 (197) T 2wee_A 163 HSGRH------PVRELAVDGCVPLDVDTWDDYRRLLE 193 (197) T ss_dssp HCTTS------CEEEEECSSCCCCCCSSHHHHHHHHT T ss_pred HHCCC------CEEEEECCCCCCCCCCCHHHHHHHHH T ss_conf 84868------77997489881658998999999984 No 6 >1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase; plantherbicide, non-mevalonate pathway, isoprenoid; HET: C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13 Probab=99.92 E-value=2.1e-24 Score=158.40 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=112.0 Q ss_pred CEEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCC-CEEEEECC-HHHHHHHHHCC---CEEECCCCCHHHH Q ss_conf 9178864887535666--9760266784379899999972687-20787252-13344431010---0000234412367 Q T0593 1 MKVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQT-VFVCRDEK-QAEKLSSRYEA---EFIWDLHKGVGSI 73 (208) Q Consensus 1 m~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv~~~-~~~~~~~~~~~---~~~~~~~~~~~~~ 73 (208) +.+||||||+|||||+ ||+|++++|||||+|+++++..... ..++++.+ +..+....... .......++.... T Consensus 5 i~~IIlAaG~g~Rm~~~~pK~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~ 84 (228) T 1w77_A 5 VSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGKERQ 84 (228) T ss_dssp EEEEEECCC-------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEECCCSSHH T ss_pred EEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH T ss_conf 59999688147458869995152789748999999999861654413402407766665301222222222234342134 Q ss_pred HHHHHHHHH----CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCCCEE--------------------CCHH Q ss_conf 788887750----497899827887688899999999985079879997-389232--------------------0221 Q T0593 74 AGIHAALRH----FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP-KHDYPE--------------------PLLA 128 (208) Q Consensus 74 ~~~~~~~~~----~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~-~~~~~~--------------------~~~~ 128 (208) .++.+++.. .+.++++.+|+||++++.+..+++.....+..+++. ..+... ..+. T Consensus 85 ~sv~~~l~~~~~~~~~v~i~~~~~p~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 164 (228) T 1w77_A 85 DSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQ 164 (228) T ss_dssp HHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBC------CCEEEEEEE T ss_pred HHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEECCCCHHHHHHHHHH T ss_conf 88877776532332333024321235607777665554430365213567666457761687412235420013343333 Q ss_pred HCCHHHHHH-HHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 000678999-9999871205789999752612321450144228644203698989999999999971 Q T0593 129 YYAESAADE-LERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKM 195 (208) Q Consensus 129 ~~~~~~~~~-i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~ 195 (208) .+....+.. +..... .... +++...........+..+..+ ...++|||||||++||+++++. T Consensus 165 ~f~~~~L~~~~~~~~~-~~~~---~tD~~~l~~~~g~~v~~i~~~-~~nikI~t~eDL~~Ae~lL~~~ 227 (228) T 1w77_A 165 VIKPELLKKGFELVKS-EGLE---VTDDVSIVEYLKHPVYVSQGS-YTNIKVTTPDDLLLAERILSED 227 (228) T ss_dssp EECHHHHHHHHHHHHH-SCCC---CCC-CCTTGGGSSCCEEEECC-TTCCCCCSHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHH-CCCC---CCCHHHHHHHCCCCEEEEECC-HHHCCCCCHHHHHHHHHHHHHC T ss_conf 4536899999999885-3998---675999999779955999679-5535889999999999998504 No 7 >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Probab=99.91 E-value=2e-24 Score=158.54 Aligned_cols=183 Identities=21% Similarity=0.271 Sum_probs=109.2 Q ss_pred CE--EEEECCCCCCCCCC-CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHH Q ss_conf 91--78864887535666-9760266784379899999972687207872521334443101000002344123677888 Q T0593 1 MK--VAVLVGGVGRRIGM-EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208) Q Consensus 1 m~--~vIlAaG~gtRlg~-pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208) |+ |||||||+|||||+ ||+|++++|+|||+|+++++.+...+ +|++....+.. ...... ...++.....++. T Consensus 24 Mki~aIILAaG~GtRm~~~pK~l~~i~Gkpli~~~l~~~~~~~~i-ivv~~~~~~~~-~~~~~~---~v~GG~tR~~SV~ 98 (236) T 2px7_A 24 MEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAAFRDAAEV-LVALPPGAEPP-KGLGAV---FLEGGATRQASVA 98 (236) T ss_dssp CCCEEEEECCC-------CCGGGCBCSSSBHHHHHHHHTTTCSEE-EEEECTTCCCC-TTCSCE---EEECCSSHHHHHH T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCE-EEEEECCCCCC-CCCCEE---ECCCCEEEEHHHH T ss_conf 827999987824564896985670899877999999986458946-99981343222-122114---4258722223387 Q ss_pred HHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-ECCCCEE-------------------CCHHHCCHHHH Q ss_conf 87750497--89982788768889999999998507987999-7389232-------------------02210006789 Q T0593 78 AALRHFGS--CVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI-PKHDYPE-------------------PLLAYYAESAA 135 (208) Q Consensus 78 ~~~~~~~~--~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v-~~~~~~~-------------------~~~~~~~~~~~ 135 (208) .+++..+. +++..+|+||++++++.++++.....+..+.+ +..+.+. -.+..+..+.+ T Consensus 99 ~aL~~~~~~~Vli~d~arP~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~~~~~~~~~~r~~~~~~qtpq~f~~~~L 178 (236) T 2px7_A 99 RLLEAASLPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAPEGEAYGRVVPREAFRLVQTPQGFFTALL 178 (236) T ss_dssp HHHHHCCSSEEEECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEECSSSCEEEECGGGCEEECSCEEEEHHHH T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCEEEEEECCEEEEEHHHHHHHHHHH T ss_conf 66641155514520252214979999999877634780464044453289985250566640320246301345149999 Q ss_pred H-HHHHHHHHCCHHHH---HHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHC Q ss_conf 9-99999871205789---9997526123214501442286442036989899999999999715 Q T0593 136 D-ELERAILQGIRKIL---VPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMS 196 (208) Q Consensus 136 ~-~i~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~ 196 (208) . ........+. .+. .+.+.. ..++..+..+.. .+.|+|||||+.||.|++-++ T Consensus 179 ~~a~~~~~~~~~-~~TDd~~l~~~~------g~kV~~v~g~~~-NiKITt~eDL~~Ae~llk~~~ 235 (236) T 2px7_A 179 REAHAYARRKGL-EASDDAQLVQAL------GYPVALVEGEAT-AFKITHPQDLVLAEALARVWS 235 (236) T ss_dssp HHHHHHHHHHTC-CCSSHHHHHHHT------TCCCEEEECCTT-CCCCCSHHHHHHHHHHHTC-- T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHC------CCCEEEEEECHH-CCCCCCHHHHHHHHHHHHHHC T ss_conf 999999886599-977199999976------997799973800-078289999999999998652 No 8 >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Probab=99.91 E-value=3.8e-25 Score=162.62 Aligned_cols=191 Identities=12% Similarity=0.091 Sum_probs=106.8 Q ss_pred EEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHH---HHHHHCCCEEE-C---CCCCHHHHHH Q ss_conf 788648875356669760266784379899999972687207872521334---44310100000-2---3441236778 Q T0593 3 VAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEK---LSSRYEAEFIW-D---LHKGVGSIAG 75 (208) Q Consensus 3 ~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~---~~~~~~~~~~~-~---~~~~~~~~~~ 75 (208) |||||||.||||+. |||++++|||||+|+++++...+....|++..+.+. ........... . .........+ T Consensus 7 aiIlA~g~s~Rl~~-K~L~~i~GkpLI~~~i~~l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (228) T 1ezi_A 7 AVILARQNSKGLPL-KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISG 85 (228) T ss_dssp EEEECCSSCSSSTT-TTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CHHHHH T ss_pred EEEECCCCCCCCCC-CCEEEECCEEHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH T ss_conf 99964877998999-25578799798999999997389977899747729999999971982566422326998418999 Q ss_pred HHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC---CC-----EECC----HHHCCHHHHHHHH Q ss_conf 888775----049789982788768889999999998507987999738---92-----3202----2100067899999 Q T0593 76 IHAALR----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKH---DY-----PEPL----LAYYAESAADELE 139 (208) Q Consensus 76 ~~~~~~----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~---~~-----~~~~----~~~~~~~~~~~i~ 139 (208) +...+. ..+.++++.+|+||++++.++++++.+.+.+.+.++... .. .... ............+ T Consensus 86 ~~~~~~~~~~~~~~vlil~~D~p~~~~~~l~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 165 (228) T 1ezi_A 86 VIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLEQPR 165 (228) T ss_dssp HHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECC--CEEESSCHHHHTCCG T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEEECCCHHHH T ss_conf 99999963666898999659856104889999998533478858999865326886159998399889999713532678 Q ss_pred HHHH------HCCHHH-HHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHC Q ss_conf 9987------120578-99997526123214501442286442036989899999999999715 Q T0593 140 RAIL------QGIRKI-LVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMS 196 (208) Q Consensus 140 ~~~~------~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~ 196 (208) .... .+.+.. ...+..... .....+..+..+...|+||||||||++||++++.++ T Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~dIdt~eDl~~Ae~il~~~~ 227 (228) T 1ezi_A 166 QQLPQAFRPNGAIYINDTASLIANNC--FFIAPTKLYIMSHQDSIDIDTELDLQQAENILNHKE 227 (228) T ss_dssp GGSCCEEEEEEEEEEEEHHHHHHHTS--SCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHCCC T ss_conf 77257789863367624999985220--037976999848865469999999999999996618 No 9 >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393, structural genomics, JCSG, joint center for structural genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Probab=99.91 E-value=1.2e-23 Score=153.98 Aligned_cols=185 Identities=17% Similarity=0.235 Sum_probs=105.5 Q ss_pred CE-EEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCC-CEEEEECC-HHHHHHHHHC--CCEEECCCCCHHHH Q ss_conf 91-78864887535666--9760266784379899999972687-20787252-1334443101--00000234412367 Q T0593 1 MK-VAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQT-VFVCRDEK-QAEKLSSRYE--AEFIWDLHKGVGSI 73 (208) Q Consensus 1 m~-~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv~~~-~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (208) |+ |||||||+|||||+ ||+|++++|+|||+|+++++.+... ..++++.+ +......... ........++.... T Consensus 13 M~IAIILAaG~gtRm~~~~pK~l~~i~gkplI~~~i~~~~~~~~i~~IiVv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 92 (234) T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRS 92 (234) T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEEECCSSHH T ss_pred CCEEEECCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCC T ss_conf 70899946877623897998437078999989999999996878452232235111000000023444431123455432 Q ss_pred HHHHHHH----H-HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCCCE--------EC----------CHHH Q ss_conf 7888877----5-0497899827887688899999999985079879997-38923--------20----------2210 Q T0593 74 AGIHAAL----R-HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP-KHDYP--------EP----------LLAY 129 (208) Q Consensus 74 ~~~~~~~----~-~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~-~~~~~--------~~----------~~~~ 129 (208) .++..++ . ..+.++++.+|+||+++++++++++.......++.+. ..+.. .. .... T Consensus 93 ~s~~~~l~~~~~~~~~~v~i~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (234) T 1vpa_A 93 QSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDRIEYIPRKGVYRILTPQA 172 (234) T ss_dssp HHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTEEEEECCTTEEEEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHH T ss_conf 00789999997349973899852334551778877765301122122344344326750676035214056652322344 Q ss_pred CCHHHHHHHHHHHHHCCHHHH---HHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHC Q ss_conf 006789999999871205789---9997526123214501442286442036989899999999999715 Q T0593 130 YAESAADELERAILQGIRKIL---VPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMS 196 (208) Q Consensus 130 ~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~ 196 (208) +.. ..+......+. .+. ..+... ..++..+..+.. .++|||||||+.||.+++++. T Consensus 173 ~~~---~~l~~~~~~~~-~~tD~~~~~~~~------g~kv~~i~g~~~-nikItt~eDL~~Ae~llk~~~ 231 (234) T 1vpa_A 173 FSY---EILKKAHENGG-EWADDTEPVQKL------GVKIALVEGDPL-CFKVTFKEDLELARIIAREWE 231 (234) T ss_dssp EEH---HHHHHHHTTCC-CCSSSHHHHHTT------TCCCEEEECCGG-GCCCCSTTHHHHHHHHHHHHC T ss_pred HHH---HHHHHHHHHCC-CCCCHHHHHHHC------CCCEEEEECCHH-HCCCCCHHHHHHHHHHHHHHC T ss_conf 417---88888897478-867489999976------995699966855-348899999999999998643 No 10 >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Probab=99.90 E-value=6.3e-23 Score=149.87 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=106.4 Q ss_pred EEEEECCCCCCCCCC---CCCCEEECCEEHHHHHHHHHHHCCC-CEEEEECC-HHHHH----HHHHCCCE-EECCCCCHH Q ss_conf 178864887535666---9760266784379899999972687-20787252-13344----43101000-002344123 Q T0593 2 KVAVLVGGVGRRIGM---EKTEVMLCGKKLIEWVLEKYSPFQT-VFVCRDEK-QAEKL----SSRYEAEF-IWDLHKGVG 71 (208) Q Consensus 2 ~~vIlAaG~gtRlg~---pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv~~~-~~~~~----~~~~~~~~-~~~~~~~~~ 71 (208) .|||||||+|||||+ ||+|++++|||||+|+++++..... ..++++.+ ..... ........ ......+.. T Consensus 5 ~aiIlAaG~gtR~~s~~~PK~l~~i~gkplI~~~i~~~~~s~~~~~IiVv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (246) T 3f1c_A 5 YAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGED 84 (246) T ss_dssp EEEEECC-----C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCSS T ss_pred EEEEECCCCCCCCCCCCCCHHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 99996586541499969680304788944999999999718986756302427789888765543035652354125542 Q ss_pred ----HHHHHHHHHH-----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCCCEECC--------------- Q ss_conf ----6778888775-----0497899827887688899999999985079879997-38923202--------------- Q T0593 72 ----SIAGIHAALR-----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP-KHDYPEPL--------------- 126 (208) Q Consensus 72 ----~~~~~~~~~~-----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~-~~~~~~~~--------------- 126 (208) ...++..... ..+.++++.+|+||++++.++.+++.+...+..+++. ........ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~P~i~~~~I~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (246) T 3f1c_A 85 RNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHM 164 (246) T ss_dssp HHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCCCGGGE T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCEEEEEEECCHHH T ss_conf 01008779999987532688864899845666788899999999999679769999555631313222045543131145 Q ss_pred -----HHHCCH-HHHHHHHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHCCCCC Q ss_conf -----210006-78999999987120578999975261232145014422864420369898999999999997155773 Q T0593 127 -----LAYYAE-SAADELERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMSTEGL 200 (208) Q Consensus 127 -----~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~~~~~ 200 (208) +..+.. .+...+......+...+.+. ..........+..+..+.. -++|||||||+.||++++++..+.. T Consensus 165 ~~~~tP~~f~~~~l~~~~~~~~~~~~~~~tD~---~~~~~~~~~~i~~i~~~~~-n~kItt~eDl~~Ae~ll~~r~~~~~ 240 (246) T 3f1c_A 165 YQGQTPQSFNMKKVFNHYQNLTPEKKQILTDA---CKICLLAGDDVKLVKGEIF-NIKITTPYDLKVANAIIQERIANEG 240 (246) T ss_dssp EEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCH---HHHHHHTTCCCEEEECCTT-CCCCCSHHHHHHHHHHHHHHC---- T ss_pred HHHCCCHHCCHHHHHHHHHHHHHHCCCCCCHH---HHHHHHCCCCEEEEECCHH-HCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 54407311169999999999887089774289---9999987997699977877-6489999999999999998888369 Q ss_pred C Q ss_conf 0 Q T0593 201 L 201 (208) Q Consensus 201 ~ 201 (208) . T Consensus 241 ~ 241 (246) T 3f1c_A 241 H 241 (246) T ss_dssp - T ss_pred C T ss_conf 9 No 11 >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP), isoprenoid biosynthesys; HET: CTP; 1.50A {Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 1h3m_A Probab=99.89 E-value=8.3e-23 Score=149.20 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=109.8 Q ss_pred EEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCCC-EEEEECCHHHHHHH---HHCCCEEECCCCCHHHHHH Q ss_conf 178864887535666--97602667843798999999726872-07872521334443---1010000023441236778 Q T0593 2 KVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQTV-FVCRDEKQAEKLSS---RYEAEFIWDLHKGVGSIAG 75 (208) Q Consensus 2 ~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~~-~~iv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 75 (208) .|||||||+||||++ ||+|++|+|+|||+|+++++...... .++++......... ...........++.....+ T Consensus 9 ~aIILAAG~GtRm~s~~PK~l~~i~gkpli~~~i~~~~~~~~~~~IvVv~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s 88 (236) T 1i52_A 9 CAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADS 88 (236) T ss_dssp EEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGCTTEEEEECCSSHHHH T ss_pred EEEEECCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEECCCCCCCHHH T ss_conf 89996880571189899842618898889999999986367866599731701444323201234321111578740389 Q ss_pred HHHHHHH---CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE--EECCCCEEC---------------------CHHH Q ss_conf 8887750---4978998278876888999999999850798799--973892320---------------------2210 Q T0593 76 IHAALRH---FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL--IPKHDYPEP---------------------LLAY 129 (208) Q Consensus 76 ~~~~~~~---~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~--v~~~~~~~~---------------------~~~~ 129 (208) +..++.. .+.+++..+|.||++.+.+..++.........+. .+..+.... .+.. T Consensus 89 ~~~a~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~r~~~~~~~tp~~ 168 (236) T 1i52_A 89 VLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQF 168 (236) T ss_dssp HHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEE T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHEEECCCHHH T ss_conf 99998605787379842677877758999999999863376406898630240300257764322234123145265256 Q ss_pred CCHHH-HHHHHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 00678-9999999871205789999752612321450144228644203698989999999999971557 Q T0593 130 YAESA-ADELERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMSTE 198 (208) Q Consensus 130 ~~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~~~ 198 (208) +.... ...+.....++ +.+.+... .......++..+..+ ...++|||||||+.||.++++...+ T Consensus 169 f~~~~L~~~~~~~~~~~-~~~TD~~~---l~~~~g~kv~~i~~~-~~n~kItt~eDL~~ae~~l~~~i~~ 233 (236) T 1i52_A 169 FPRELLHDCLTRALNEG-ATITDEAS---ALEYCGFHPQLVEGR-ADNIKVTRPEDLALAEFYLTRTIHQ 233 (236) T ss_dssp EEHHHHHHHHHHHHHTT-CCCCSHHH---HHHHTTCCCEEEECC-TTCCCCCSHHHHHHHHHHHCC---- T ss_pred HHHHHHHHHHHHHHHCC-CCCCCHHH---HHHHCCCCEEEEECC-HHHCCCCCHHHHHHHHHHHHHHHCC T ss_conf 23999999999998519-99772999---999769965999658-5643899999999999998754112 No 12 >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Probab=99.89 E-value=6.4e-23 Score=149.84 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=101.6 Q ss_pred EEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEE-EECCHHH---HHHHHHCCCEEECCCCCHH----H Q ss_conf 7886488753566--697602667843798999999726872078-7252133---4443101000002344123----6 Q T0593 3 VAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVC-RDEKQAE---KLSSRYEAEFIWDLHKGVG----S 72 (208) Q Consensus 3 ~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~i-v~~~~~~---~~~~~~~~~~~~~~~~~~~----~ 72 (208) |||||||.||||| .||+|++++|||||+|+++++...+....+ ++..... ................+.. . T Consensus 9 AIILAaG~g~Rm~s~~pK~l~~l~gkpli~~~i~~~~~~~~~~~iiVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 88 (231) T 1vgw_A 9 ALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETV 88 (231) T ss_dssp EEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECCCCSSHHHHH T ss_pred EEEECCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 99976987522897998037179987699999999986253232102215022111331100232111024675036667 Q ss_pred HHHHHHHHH-----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE--EECCCC--------EECC------HHHCC Q ss_conf 778888775-----04978998278876888999999999850798799--973892--------3202------21000 Q T0593 73 IAGIHAALR-----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL--IPKHDY--------PEPL------LAYYA 131 (208) Q Consensus 73 ~~~~~~~~~-----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~--v~~~~~--------~~~~------~~~~~ 131 (208) ..++..... ..+.++++.+|+||++++.+..+++.....+.+++ ++..+. +... ..... T Consensus 89 ~~~l~~l~~~~~~~~~d~v~i~~~~~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~t 168 (231) T 1vgw_A 89 RNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVDRSGLWQAQT 168 (231) T ss_dssp HHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEESSSBEEEEECCTTEEEEEE T ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCEEEECCCHHHHHHHHH T ss_conf 67999998741145554034304443568889998888753111111111123343214522884763156688999886 Q ss_pred HHH--HHHHHHHHH-HCCHHHH---HHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 678--999999987-1205789---99975261232145014422864420369898999999999997 Q T0593 132 ESA--ADELERAIL-QGIRKIL---VPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSK 194 (208) Q Consensus 132 ~~~--~~~i~~~~~-~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~ 194 (208) +++ ...+...+. .+.+.+. .+... ....+..+..+.. -++|||||||+.||.+|+. T Consensus 169 p~~f~~~~l~~~~~~~~~~~~tD~~~l~~~------~g~~v~~v~~~~~-nikIttpeDl~~ae~lL~~ 230 (231) T 1vgw_A 169 PQLFQAGLLHRALAAENLGGITDEASAVEK------LGVRPLLIQGDAR-NLKLTQPQDAYIVRLLLDA 230 (231) T ss_dssp EEEEEHHHHHHHHHC----CCCSHHHHHHT------TTCCCEEEECCTT-CCCCCSHHHHHHHHHHCC- T ss_pred HHCCHHHHHHHHHHHHHCCCCCCHHHHHHH------CCCCEEEEECCHH-HCCCCCHHHHHHHHHHHHC T ss_conf 220006889998888614899818999998------7997599977800-0680899999999999853 No 13 >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Probab=99.88 E-value=1.2e-23 Score=153.99 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=108.5 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHHCCCEEECC-CCCH Q ss_conf 917886488753566-----6976026678437989999997268720787252133444----31010000023-4412 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLS----SRYEAEFIWDL-HKGV 70 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~----~~~~~~~~~~~-~~~~ 70 (208) |+|||||||.||||+ .||||++|+|||||+|+++++...+...++++.++..+.. ..+...+.... .... T Consensus 26 mkaiIlAaG~GtRm~~~t~~~PK~Ll~I~gkpli~~~i~~l~~~gi~~Iiiv~g~~~e~i~~~~~~~~i~ii~~~~~~~~ 105 (254) T 1jyk_A 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADY 105 (254) T ss_dssp CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTS T ss_pred CCEEEECCCCCCCCCCHHCCCCEEEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 23899898676568721069880253899858999999999985998899933543211222223468532222122022 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE-------------EEECCCCE------------EC Q ss_conf 367788887750497899827887688899999999985079879-------------99738923------------20 Q T0593 71 GSIAGIHAALRHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDA-------------LIPKHDYP------------EP 125 (208) Q Consensus 71 ~~~~~~~~~~~~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~-------------~v~~~~~~------------~~ 125 (208) +..+++..+.+..+..+++.+|+.+........+ ...... .+...+.+ .. T Consensus 106 gt~~sl~~a~~~i~~~~vi~~dd~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 180 (254) T 1jyk_A 106 NNFYSLYLVKEELANSYVIDADNYLFKNMFRNDL-----TRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILS 180 (254) T ss_dssp CTHHHHHTTGGGCTTEEEEETTEEESSCCCCSCC-----CSEEEEECEESSCSSCCEEEECTTCBEEEEECCCSSEEBCC T ss_pred CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH-----HHCCCCEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCEE T ss_conf 3323322103343012223453234368999999-----72865346513887775179868985577786477777146 Q ss_pred CHHHCCHHHHHHHHHHHHHC----CHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 22100067899999998712----05789999752612321450144228644203698989999999999971 Q T0593 126 LLAYYAESAADELERAILQG----IRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKM 195 (208) Q Consensus 126 ~~~~~~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~ 195 (208) ...++.......+...+.+. ... ..+++..-...+....+.+.......|++|||||||++|+++++.. T Consensus 181 Gi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~~~~~~~~~~Idt~edl~~~~~~~kn~ 253 (254) T 1jyk_A 181 GVSFWDAPTAEKIVSFIDKAYVSGEFV-DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253 (254) T ss_dssp SEEEECHHHHHHHHHHHHHHHTTTCCT-TCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-- T ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCEEEEEECCCCEEECCCHHHHHHHHHHHHCC T ss_conf 789986699999999988865134420-2689999999997479069995698578069999999999997268 No 14 >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.90A {Thermus thermophilus HB8} SCOP: c.68.1.19 Probab=99.86 E-value=6.7e-21 Score=138.27 Aligned_cols=110 Identities=26% Similarity=0.350 Sum_probs=85.8 Q ss_pred EEEEECCCCCC---CCCC-CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHH Q ss_conf 17886488753---5666-9760266784379899999972687207872521334443101000002344123677888 Q T0593 2 KVAVLVGGVGR---RIGM-EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208) Q Consensus 2 ~~vIlAaG~gt---Rlg~-pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208) .|||||||+|+ |||. ||+|++++|||||+|+++++...+...++++.++..... .........+...++. T Consensus 4 ~avIlAaG~~~~~~r~g~~~K~L~~i~Gkpli~~~l~~l~~~~~~~ivvv~~~~~~~~------~~~~~~~~~~~~~~~~ 77 (232) T 2dpw_A 4 SAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPA------PALTLPDRGGLLENLE 77 (232) T ss_dssp EEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSSC------CSEEECCCSSHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCEE------EEECCCCCHHHHHHHH T ss_conf 5999899899888899998910169999849999999998789988999907843314------5320232138899999 Q ss_pred HHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 877504-9789982788768889999999998507987999 Q T0593 78 AALRHF-GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 78 ~~~~~~-~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) .+++.. +.++++.+|+||+++++++++++.+.+.+..+.+ T Consensus 78 ~al~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~v 118 (232) T 2dpw_A 78 QALEHVEGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI 118 (232) T ss_dssp HHHHTCCSEEEEEETTCTTCCHHHHHHHHHHCCSCSEEEEE T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 99874258659996887756999999999961005723699 No 15 >3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose, structural genomics, center for structural genomics of infectious diseases; HET: SUC; 2.76A {Bacillus anthracis} Probab=99.85 E-value=5.5e-21 Score=138.76 Aligned_cols=189 Identities=14% Similarity=0.033 Sum_probs=105.9 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CC-CEEECC Q ss_conf 917886488753566-----6976026678437989999997268720787252133444310--------10-000023 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRY--------EA-EFIWDL 66 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~--------~~-~~~~~~ 66 (208) |+|||||||+||||+ .||||++|+|+|||+|+++++...+...++++.+......... .. ...... T Consensus 25 MkaIIlAaG~GtRl~plt~~~PK~ll~i~gkpli~~~l~~l~~~gi~~iiiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (269) T 3hl3_A 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQ 104 (269) T ss_dssp EEEEEECCSCCGGGTTTTTTSCGGGSEETTEEHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTSGGGTCEEEEEEE T ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCCEEEEEEC T ss_conf 64999898662468843579984077999998899999999864995042001233311011110123467846999641 Q ss_pred CCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---EC------------CCC------- Q ss_conf 44123677888877504--9789982788768889999999998507987999---73------------892------- Q T0593 67 HKGVGSIAGIHAALRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---PK------------HDY------- 122 (208) Q Consensus 67 ~~~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~~------------~~~------- 122 (208) ....+...++..+.+.. +..+++.+|..+.. +. ..+++.+.+.....++ +. .++ T Consensus 105 ~~~~G~~~sl~~~~~~i~~~~~lli~~dd~~~~-~~-~~~l~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~V~~i~eK 182 (269) T 3hl3_A 105 DKAGGIAQALGLCEDFVGNDRMVVILGDNIFSD-DI-RPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQNRKIIEIEEK 182 (269) T ss_dssp CSSCCHHHHHHTTHHHHTTSEEEEEETTEEESS-CS-HHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEETTEEEEEEES T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH-HH-HHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCEEEEEEEC T ss_conf 456758999999999738997489905742004-56-9999999867899789877417831153279519969999989 Q ss_pred --------EECCHHHCCHHHHHHHHHHHH--HCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHH Q ss_conf --------320221000678999999987--1205789999752612321450144228644203698989999999999 Q T0593 123 --------PEPLLAYYAESAADELERAIL--QGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEIC 192 (208) Q Consensus 123 --------~~~~~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il 192 (208) ......++++.....+..... .+.+.+.+++..+ +....+..+... ..|+|||||+||.+|+.++ T Consensus 183 p~~~~~~~~~~Gi~~f~~~~~~~l~~~~~~~~~e~~~~d~~~~l----i~~~~i~~~~~~-g~W~DigTp~dl~~An~~~ 257 (269) T 3hl3_A 183 PKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWY----LKRGVLTYNEMS-GWWTDAGTHVSLQRANALA 257 (269) T ss_dssp CSSCSCSEEEEEEEEECTHHHHHHHTSCSTHHHHCCHHHHHHHH----HHTTCEEEEECS-SCEEECCSHHHHHHHHHHH T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHCCCEEEEEEC-CEEEECCCHHHHHHHHHHH T ss_conf 99988885995721027589999986499867743277899999----975997999869-9899198999999997997 Q ss_pred HHHC Q ss_conf 9715 Q T0593 193 SKMS 196 (208) Q Consensus 193 ~~~~ 196 (208) ++.+ T Consensus 258 ~~~~ 261 (269) T 3hl3_A 258 RDIN 261 (269) T ss_dssp TTCC T ss_pred HHHH T ss_conf 6275 No 16 >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Probab=99.85 E-value=2.6e-21 Score=140.66 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=111.5 Q ss_pred CEEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHH Q ss_conf 9178864887535666--97602667843798999999726872-07872521334443101000002344123677888 Q T0593 1 MKVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQTV-FVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208) Q Consensus 1 m~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208) +.+||||||.|+|||+ ||++++++|+|||+|+++++...... .+|++..+.... ...... .....++.....|+. T Consensus 4 is~IILAAG~GsRmg~~~pKq~~~l~gkpli~~~l~~~~~~~~~~~IVVv~~~~~~~-~~~~k~-~~iv~GG~tR~~SV~ 81 (371) T 1w55_A 4 MSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYM-KKFTKN-YEFIEGGDTRAESLK 81 (371) T ss_dssp EEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHHH-HTTCSS-SEEEECCSSHHHHHH T ss_pred EEEEEECCEEEEECCCCCCHHHEEECCEEHHHHHHHHHHCCCCCCEEEEECCCHHHH-HHCCCC-EEEECCCCCCCEEEE T ss_conf 279996883001179399479804478998999999996489989999989978999-860788-089479975023566 Q ss_pred HHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCEEC---------CHHHCCHHHH--HHHHHHHH Q ss_conf 8775049--78998278876888999999999850798799-973892320---------2210006789--99999987 Q T0593 78 AALRHFG--SCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPKHDYPEP---------LLAYYAESAA--DELERAIL 143 (208) Q Consensus 78 ~~~~~~~--~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~-v~~~~~~~~---------~~~~~~~~~~--~~i~~~~~ 143 (208) .+++..+ .++++.+|+||++++.++++++.+...++.+. ++..+.... .+...++|.+ ..+..... T Consensus 82 ~gL~~i~~d~VlIHDaaRPfis~~lI~~li~~~~~~~avip~l~v~Dti~~~~~~~dR~~l~~~QTPQ~F~~~~l~~a~~ 161 (371) T 1w55_A 82 KALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKALD 161 (371) T ss_dssp HHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEETTEEECGGGCCEECSCEEEEHHHHHHHTS T ss_pred ECHHHHHCCCEEEECCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH T ss_conf 12343300311783262676424522333211223333456555443322134334540114542424555788875432 Q ss_pred HCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf 12057899997526123214501442286442036989899999999 Q T0593 144 QGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) ++.. +++...........+..+..+.. .+.|+|||||+.++. T Consensus 162 ~~~~----~TDdasl~e~~g~~V~~v~G~~~-N~KIT~~eDL~~~~~ 203 (371) T 1w55_A 162 QNLE----FTDDSTAIAAMGGKIWFVEGEEN-ARKLTFKEDLKKLDL 203 (371) T ss_dssp SCCC----CSSHHHHHHTTTCCEEEEECCGG-GCCCCSGGGGGGSCC T ss_pred HHCC----CCCCHHHHHHCCCCCEECCCHHH-CEEECCCCHHHHCCC T ss_conf 1013----45634678864985131769222-404175401110012 No 17 >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Probab=99.83 E-value=9.9e-20 Score=131.54 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=40.1 Q ss_pred CEEEEECCCCCCCCCC---CCCCEEECCEEHHHHHHHHHHHCCCCEEEEE Q ss_conf 9178864887535666---9760266784379899999972687207872 Q T0593 1 MKVAVLVGGVGRRIGM---EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRD 47 (208) Q Consensus 1 m~~vIlAaG~gtRlg~---pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~ 47 (208) |.|||||||+|||||+ ||||++|+|||||+|+++++.+.+....|++ T Consensus 3 ~~aiIlAaG~GsRm~~~~~PK~L~~i~GkPlI~~~i~~~~~~~~~~~Iiv 52 (236) T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVV 52 (236) T ss_dssp EEEEEEEC-----------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEE T ss_pred EEEEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 39999057666459999969017278983099999999984899776985 No 18 >3juk_A UDP-glucose pyrophosphorylase (GALU); transferase; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Probab=99.83 E-value=1.8e-19 Score=130.02 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=110.2 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC-------------- Q ss_conf 917886488753566-----6976026678437989999997268720787252133444310100-------------- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE-------------- 61 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~-------------- 61 (208) +||||||||+||||+ .||||+||+|||||+|+++++.+.+...++++.++........... T Consensus 3 ~kavILAaG~GtRl~plT~~~pK~Ll~i~gkpli~~~i~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 82 (281) T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKE 82 (281) T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCHH T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCC T ss_conf 26999898686668833369984244899987999999999986997999988787531033331433210001377740 Q ss_pred --------------E-EECCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCCHHH----HHHHHHHHHCCCCEEEEECC Q ss_conf --------------0-00234412367788887750--497899827887688899----99999998507987999738 Q T0593 62 --------------F-IWDLHKGVGSIAGIHAALRH--FGSCVVAAIDMPFVKPEV----LEHLYKEGEKAGCDALIPKH 120 (208) Q Consensus 62 --------------~-~~~~~~~~~~~~~~~~~~~~--~~~~lv~~~D~p~~~~~~----i~~l~~~~~~~~~~~~v~~~ 120 (208) + ........+...++..+.+. .++++++.+|.-+...+. ..............+..... T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~a~~~i~~e~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281) T 3juk_A 83 NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEV 162 (281) T ss_dssp HHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCSCEEEEEEC T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 22455540255412799751467868999999998739997599944745643743555566776655223443014654 Q ss_pred -------------------------------------CCEECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEEE Q ss_conf -------------------------------------9232022100067899999998--7120578999975261232 Q T0593 121 -------------------------------------DYPEPLLAYYAESAADELERAI--LQGIRKILVPLERLNVVYY 161 (208) Q Consensus 121 -------------------------------------~~~~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~ 161 (208) ........++.+..+..+...- ..+++.+..++..+ + T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eKp~~~~~~s~~~~~g~~if~~~i~~~~~~~~~~~~~e~~l~d~~~~l----~ 238 (281) T 3juk_A 163 ALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQ----A 238 (281) T ss_dssp CTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCHHHHHHHH----H T ss_pred ECCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEECEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHH----H T ss_conf 303564466002432048834563467558887886528996507878799989985799889823278999999----8 Q ss_pred CCCCEEEECCCHHHCCCCCCHHHHHHH-HHHHHHHCCCCC Q ss_conf 145014422864420369898999999-999997155773 Q T0593 162 PVEKLRKFDKELISFFNINTPDDLKRA-EEICSKMSTEGL 200 (208) Q Consensus 162 ~~~~~~~~~~~~~~~~~IdtpeDl~~a-~~il~~~~~~~~ 200 (208) ...++.++.... .|+||+||+||.+| ..+++++.-|.. T Consensus 239 ~~~~v~~~~~~g-~W~DiGtp~~l~~A~~~~~~~~~~~~~ 277 (281) T 3juk_A 239 KRKRIIAYQFKG-KRYDCGSVEGYIEASNAYYKKRLLEHH 277 (281) T ss_dssp HHSCCEEEECCS-EEEETTSHHHHHHHHHHHHHHHC---- T ss_pred HCCCEEEEEECC-EEEECCCHHHHHHHHHHHHHHHHHHHH T ss_conf 569969999586-899897999999999999998654221 No 19 >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Probab=99.83 E-value=1.1e-20 Score=137.08 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=113.3 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHH-------CCCEEECCC Q ss_conf 917886488753566-----6976026678437989999997268720787252-133444310-------100000234 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEK-QAEKLSSRY-------EAEFIWDLH 67 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~-~~~~~~~~~-------~~~~~~~~~ 67 (208) |+|||||||.||||. .||||+|++|||||+|+++.+...+...++++.+ ......... ...+....+ T Consensus 4 MkaiIlagG~GtRl~p~t~~~pK~llpv~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~dg~~~gi~i~y~~Q 83 (296) T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ 83 (296) T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHCCEEEEEEC T ss_conf 57999899786667631369995355899996799999999987998899992634289999996641762936999878 Q ss_pred C-CHHHHHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---ECCC-------------C------ Q ss_conf 4-123677888877504--9789982788768889999999998507987999---7389-------------2------ Q T0593 68 K-GVGSIAGIHAALRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---PKHD-------------Y------ 122 (208) Q Consensus 68 ~-~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~~~~-------------~------ 122 (208) + ..|...++..+.... +..+++.+|..|...+ +..+++.+.+...++++ +..+ . T Consensus 84 ~~p~Gta~Ai~~a~~~i~~~~~~lilgddif~~~~-l~~~l~~~~~~~~~~tI~~~~v~dp~~yGVie~d~~g~i~~i~E 162 (296) T 1mc3_A 84 PSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQG-FSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEE 162 (296) T ss_dssp SSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSS-CHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCB T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCEEEECCC-HHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCCCEEEEEE T ss_conf 99996799999999981999759999996888887-79999999828898799999889962675689889996878898 Q ss_pred ---------EECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEEECCCCEEE-ECCCHHHCCCCCCHHHHHHHHH Q ss_conf ---------32022100067899999998--71205789999752612321450144-2286442036989899999999 Q T0593 123 ---------PEPLLAYYAESAADELERAI--LQGIRKILVPLERLNVVYYPVEKLRK-FDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 123 ---------~~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~IdtpeDl~~a~~ 190 (208) ......++.+..++.+.... ..|+..+.++.... +......+ .......|+|++|++||..|.. T Consensus 163 KP~~p~Snla~~GiY~f~~~v~~~~~~~k~s~rgE~eItD~~~~~----i~~~~~~~~~~~~~~~w~D~Gt~~~l~~a~~ 238 (296) T 1mc3_A 163 KPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMY----LEAGNLTVELLGRGFAWLDTGTHDSLIEAST 238 (296) T ss_dssp SCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHH----HHTTCEEEEECCTTCEEEECCSHHHHHHHHH T ss_pred CCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHCCCCEEEEECCCCEEECCCCHHHHHHHHH T ss_conf 999998985998999988289999985899889963717899999----9859935999548977974899899999999 Q ss_pred HHHHHC Q ss_conf 999715 Q T0593 191 ICSKMS 196 (208) Q Consensus 191 il~~~~ 196 (208) +++... T Consensus 239 ~i~~~e 244 (296) T 1mc3_A 239 FVQTVE 244 (296) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 20 >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} SCOP: c.68.1.6 Probab=99.82 E-value=5.8e-20 Score=132.87 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=111.3 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHH-HHHHHHH-------CCCEE-ECC Q ss_conf 917886488753566-----697602667843798999999726872078725213-3444310-------10000-023 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQA-EKLSSRY-------EAEFI-WDL 66 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~-~~~~~~~-------~~~~~-~~~ 66 (208) |+|||||||+||||. .||||+|++|+|||+|+++++...+...++++.++. ....... ...+. ... T Consensus 4 MkaiILAgG~GtRl~plt~~~PK~ll~i~~k~~i~~~l~~l~~~g~~~i~iv~~~~~~~~~~~~l~~~~~~~~~i~~i~e 83 (295) T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQ 83 (295) T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEEC T ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCHHHHCCCEEEEEEC T ss_conf 68999899784537721179887112699988999999999877998699994634499999984701340974899979 Q ss_pred CCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---ECC-----CCE--------E---- Q ss_conf 44123677888877504--9789982788768889999999998507987999---738-----923--------2---- Q T0593 67 HKGVGSIAGIHAALRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---PKH-----DYP--------E---- 124 (208) Q Consensus 67 ~~~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~~~-----~~~--------~---- 124 (208) ....+...++..+.... +..+++.+|..+.... +..+++.+.....++++ ... |++ . T Consensus 84 ~~~~gT~~ai~~a~~~l~~~~~~li~~dd~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~~yG~i~~~~~~~I~~f~E 162 (295) T 1lvw_A 84 EEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHR-FSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEE 162 (295) T ss_dssp SSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTT-HHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEE T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCEEECCH-HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEEC T ss_conf 99999799999999971999889998994651612-68999999856798699999888875665899889996888674 Q ss_pred -----------CCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEEECCCC-EEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf -----------022100067899999998--71205789999752612321450-1442286442036989899999999 Q T0593 125 -----------PLLAYYAESAADELERAI--LQGIRKILVPLERLNVVYYPVEK-LRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 125 -----------~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) ....++....+..+.... ..+.+.+....... ..... ..........|+|++||+||..+.. T Consensus 163 Kp~~~~s~~~~~Giy~~~~~if~~~~~~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Dig~~~~l~~~s~ 238 (295) T 1lvw_A 163 KPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEY----LRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238 (295) T ss_dssp SCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHH----HHTTCEEEEEECTTCEECCCSSHHHHHHHHH T ss_pred CCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCEEECCCHHHH----HHHCCCCEEECCCCCEEECCCCHHHHHHHHH T ss_conf 777875541773349998589999986698878970505306999----9858872798389975756998566888899 Q ss_pred HHHHHCC Q ss_conf 9997155 Q T0593 191 ICSKMST 197 (208) Q Consensus 191 il~~~~~ 197 (208) .++.+.. T Consensus 239 ~i~~~~k 245 (295) T 1lvw_A 239 FIETIQK 245 (295) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999986 No 21 >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Probab=99.82 E-value=5.8e-20 Score=132.87 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=105.8 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---------------- Q ss_conf 917886488753566-----69760266784379899999972687207872521334443101---------------- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYE---------------- 59 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~---------------- 59 (208) ++|||||||+||||. .||||+||+|+|||+|+++.+.+.+...++++.++......... T Consensus 15 ~kaIIlAaG~GtRL~plT~~~PK~Llpv~gkpli~~~i~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (297) T 2ux8_A 15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKS 94 (297) T ss_dssp CEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCC T ss_pred CEEEEECCCCCCCCCCHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78999899687668700069983224799998999999999986998899990125045555542224443221000466 Q ss_pred -----------CCE-EECCCCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCHH-HHHHHHHHHHCCCCEEEEEC----- Q ss_conf -----------000-002344123677888877504--9789982788768889-99999999850798799973----- Q T0593 60 -----------AEF-IWDLHKGVGSIAGIHAALRHF--GSCVVAAIDMPFVKPE-VLEHLYKEGEKAGCDALIPK----- 119 (208) Q Consensus 60 -----------~~~-~~~~~~~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~-~i~~l~~~~~~~~~~~~v~~----- 119 (208) ..+ ........+...++..+.+.. ++++++.+|..+.... .+..........+....... T Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~~Gta~al~~~~~~l~~~~~~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (297) T 2ux8_A 95 LDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPDD 174 (297) T ss_dssp GGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHCSEEEEEC----- T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 66640134578628999813656367899999997399988999889524422046678899886328861689980345 Q ss_pred ---------CC------------------------CEECCHHHCCHHHHHHHHHHHH--HCCHHHHHHHHHCCEEEECCC Q ss_conf ---------89------------------------2320221000678999999987--120578999975261232145 Q T0593 120 ---------HD------------------------YPEPLLAYYAESAADELERAIL--QGIRKILVPLERLNVVYYPVE 164 (208) Q Consensus 120 ---------~~------------------------~~~~~~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~ 164 (208) .+ .......++.+..+..+..... .++..+.+++..+ +... T Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~~~~k~~~~~~~s~~~~~G~y~~~~~~~~~i~~~~~~~~~E~~l~d~l~~l----i~~~ 250 (297) T 2ux8_A 175 QTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRM----IGDQ 250 (297) T ss_dssp ------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGG----TTTS T ss_pred CCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHCC T ss_conf 676636998731278503677544404666677541354578507899988974599878853278999999----8579 Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 0144228644203698989999999999971557 Q T0593 165 KLRKFDKELISFFNINTPDDLKRAEEICSKMSTE 198 (208) Q Consensus 165 ~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~~~ 198 (208) ++..+... ..|+||+|||||.+|...+....++ T Consensus 251 ~v~~~~~~-g~W~DvGt~e~~~~An~~~~~~~~~ 283 (297) T 2ux8_A 251 PFHGVTFQ-GTRYDCGDKAGFIQANLAVALSRPD 283 (297) T ss_dssp CEEEEECS-SEEEETTSHHHHHHHHHHHHHHCTT T ss_pred CEEEEEEC-CEEEECCCHHHHHHHHHHHHHCCCH T ss_conf 96999958-5899898989999999999865933 No 22 >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Probab=99.81 E-value=1.3e-19 Score=130.96 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=48.5 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHH Q ss_conf 917886488753566-----6976026678437989999997268720787252133444 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLS 55 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~ 55 (208) +||||||||+||||+ .||||+||+|||||+|+++.+...+...++++.++..... T Consensus 3 ~KAiILAAG~GsRl~plT~~~PK~Ll~v~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i 62 (259) T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62 (259) T ss_dssp CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHH T ss_pred CCEEEECCCCCCCCCHHHCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEECCCHHHHHH T ss_conf 508998887754678344699800128999999999999999839974400200107899 No 23 >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=99.81 E-value=1.1e-18 Score=125.54 Aligned_cols=186 Identities=14% Similarity=0.045 Sum_probs=106.2 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC--------------- Q ss_conf 917886488753566-----697602667843798999999726872078725213344431010--------------- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEA--------------- 60 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~--------------- 60 (208) |||||||||+||||. .||||+||+|||||+|+++.+...+...++++.++.......... T Consensus 13 ~kaIIlAaG~GTRl~PlT~~~PK~Llpv~gkpli~~~i~~l~~~Gi~~I~iV~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (323) T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKT 92 (323) T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCH T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCCHHHHHHHCCCCC T ss_conf 57999898277668810079883201899999999999999985997899991165001220110330222222103432 Q ss_pred --------------CEEECCCCCHHHHHHHHHHHHHCC---CEE-EEECCCCCCCHHHHHHHHHHHHCCCCEEEE-EC-- Q ss_conf --------------000023441236778888775049---789-982788768889999999998507987999-73-- Q T0593 61 --------------EFIWDLHKGVGSIAGIHAALRHFG---SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI-PK-- 119 (208) Q Consensus 61 --------------~~~~~~~~~~~~~~~~~~~~~~~~---~~l-v~~~D~p~~~~~~i~~l~~~~~~~~~~~~v-~~-- 119 (208) ..........+...++..+..... ..+ ....+......................... .. T Consensus 93 ~~~~~~~~~~~~~~~~~~~q~~~~g~~~av~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323) T 2pa4_A 93 DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVS 172 (323) T ss_dssp HHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTCSEEEEEEECC T ss_pred CCHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 22000002356413899972787871689998665406743211112465300000000678887640331111000022 Q ss_pred -------------CC------------------------CEECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEE Q ss_conf -------------89------------------------232022100067899999998--712057899997526123 Q T0593 120 -------------HD------------------------YPEPLLAYYAESAADELERAI--LQGIRKILVPLERLNVVY 160 (208) Q Consensus 120 -------------~~------------------------~~~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~ 160 (208) .+ ........+.+..++.+.... ..+++.+.++...+- T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~y~~~~~i~~~l~~~~~~~~~E~~ltd~i~~li--- 249 (323) T 2pa4_A 173 EADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLI--- 249 (323) T ss_dssp GGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHH--- T ss_pred CCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCCEEEHHHHHHHHH--- T ss_conf 23441222898326421243278752021157656764424888883578999999848999998667999999999--- Q ss_pred ECCCCEEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf 214501442286442036989899999999 Q T0593 161 YPVEKLRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 161 ~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) -....+.++..+ ..|+||+||+||.+|.- T Consensus 250 ~~g~~V~~~~~~-g~W~DiGtp~~y~~A~~ 278 (323) T 2pa4_A 250 DEGHPVHIVIHQ-GKRHDLGNPGGYIPACV 278 (323) T ss_dssp HTTCCEEEEECC-SEEEECSSHHHHHHHHH T ss_pred HCCCCEEEEEEC-CEEEECCCHHHHHHHHH T ss_conf 879987999958-68998999899999999 No 24 >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Probab=99.77 E-value=2.9e-18 Score=123.12 Aligned_cols=184 Identities=12% Similarity=0.061 Sum_probs=102.9 Q ss_pred EEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC---------------- Q ss_conf 17886488753566-----697602667843798999999726872078725213344431010---------------- Q T0593 2 KVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEA---------------- 60 (208) Q Consensus 2 ~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~---------------- 60 (208) ||||||||.||||. .||||+||+|||||+|+++.+...+...++++.++.......... T Consensus 10 kaIIlAaG~GtRl~plT~~~PKpLlpi~gkpll~~~i~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (302) T 2e3d_A 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQ 89 (302) T ss_dssp EEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----CH T ss_pred EEEEECCCCCCCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 79998997876677222699843308999889999999999869978999840321455653024530244555422220 Q ss_pred -------------CEEECCCCC-HHHHHHHHHHHHH--CCCEEEEECCCCCC------CHHHHHHHHHHHHCCCCEEEE- Q ss_conf -------------000023441-2367788887750--49789982788768------889999999998507987999- Q T0593 61 -------------EFIWDLHKG-VGSIAGIHAALRH--FGSCVVAAIDMPFV------KPEVLEHLYKEGEKAGCDALI- 117 (208) Q Consensus 61 -------------~~~~~~~~~-~~~~~~~~~~~~~--~~~~lv~~~D~p~~------~~~~i~~l~~~~~~~~~~~~v- 117 (208) .+....... .+...++..+... .+..+++.+|..+. .......+++.+......++. T Consensus 90 ~~~~~~~~~~~~~~i~~~~~~~~~g~g~ai~~~~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (302) T 2e3d_A 90 LLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMV 169 (302) T ss_dssp HHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCCEEEEE T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE T ss_conf 04554203567707999867899767999998888719986389941534641565214544999999987404442035 Q ss_pred -EC-----------C--------------------------CCEECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCC Q ss_conf -73-----------8--------------------------9232022100067899999998--712057899997526 Q T0593 118 -PK-----------H--------------------------DYPEPLLAYYAESAADELERAI--LQGIRKILVPLERLN 157 (208) Q Consensus 118 -~~-----------~--------------------------~~~~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~ 157 (208) +. . +.......++++..+..+.... ..+...+..++..+ T Consensus 170 ~~~~~~~~yG~v~~d~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~G~y~~~~~~l~~~~~~~~~~~~~~~~~d~~~~l- 248 (302) T 2e3d_A 170 EPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDML- 248 (302) T ss_dssp EECSCGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHHHHHHH- T ss_pred EEEECCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCEECHHHHHHHH- T ss_conf 8752252256786147543212210203301225688998557997668743799999973799989812087999999- Q ss_pred EEEECCCCEEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf 123214501442286442036989899999999 Q T0593 158 VVYYPVEKLRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) ....++..+... ..|+||+|||||.+|.. T Consensus 249 ---~~~~~v~~~~~~-g~w~DiGtpe~y~~A~~ 277 (302) T 2e3d_A 249 ---IEKETVEAYHMK-GKSHDCGNKLGYMQAFV 277 (302) T ss_dssp ---HHHSCEEEEECC-SCEEECSSHHHHHHHHH T ss_pred ---HHCCCEEEEEEC-CEEEECCCHHHHHHHHH T ss_conf ---856997999967-78998989899999999 No 25 >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A* Probab=99.76 E-value=2.5e-18 Score=123.47 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=103.8 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHH-------CCCEEECC- Q ss_conf 917886488753566-----697602667843798999999726872078725-2133444310-------10000023- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDE-KQAEKLSSRY-------EAEFIWDL- 66 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~-~~~~~~~~~~-------~~~~~~~~- 66 (208) ++|||||||.||||. .||||++++|+|||+|+++++...+...++++. .+........ ...+.... T Consensus 3 ~kavILAgG~GtRl~plt~~~PK~ll~i~gk~li~~~l~~l~~~gi~~i~iv~~~~~~~~i~~~~~~~~~~~~~i~~~~e 82 (293) T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQ 82 (293) T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 13999888677778831279982011899823999999999977998799994666099999998663326975887016 Q ss_pred CCCHHHHHHHHHHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---ECC-----CCE------------- Q ss_conf 441236778888775049--789982788768889999999998507987999---738-----923------------- Q T0593 67 HKGVGSIAGIHAALRHFG--SCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---PKH-----DYP------------- 123 (208) Q Consensus 67 ~~~~~~~~~~~~~~~~~~--~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~~~-----~~~------------- 123 (208) ....+...++..+....+ ..+++..+. ......+..++..+.+....+++ +.. |++ T Consensus 83 ~~~~gt~~Ai~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~yG~i~~~~~~~i~~~~~ 161 (293) T 1fxo_A 83 PSPDGLAQAFLIGESFIGNDLSALVLGDN-LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEE 161 (293) T ss_dssp SSCCCGGGHHHHTHHHHTTSEEEEEETTE-EEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEE T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEECC-CHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCEECCCCCEEEEEEC T ss_conf 88887248999998874146620233011-00126779999999956998599999899826559710057872787312 Q ss_pred ----------ECCHHHCCHHHHHHHHHHHH--HCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHH Q ss_conf ----------20221000678999999987--120578999975261232145014422864420369898999999999 Q T0593 124 ----------EPLLAYYAESAADELERAIL--QGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEI 191 (208) Q Consensus 124 ----------~~~~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~i 191 (208) .....++....+..+..... .+...+........ ...............|+|++||+||..++.. T Consensus 162 k~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 238 (293) T 1fxo_A 162 KPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYL---ERGQLSVEIMGRGYAWLDTGTHDSLLEAGQF 238 (293) T ss_dssp SCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHH---HTTCEEEEECCTTSEEEECCSHHHHHHHHHH T ss_pred CCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCEECCCHHHHHH---HHCCCCEEEECCCCEECCCCCHHHHHHHHHH T ss_conf 5667666769988799848999999967978789436003899999---8499717884589701068789999999999 Q ss_pred HHHHCC Q ss_conf 997155 Q T0593 192 CSKMST 197 (208) Q Consensus 192 l~~~~~ 197 (208) ++.+.. T Consensus 239 ~~~~e~ 244 (293) T 1fxo_A 239 IATLEN 244 (293) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 26 >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Probab=99.75 E-value=4.3e-18 Score=122.11 Aligned_cols=188 Identities=12% Similarity=0.081 Sum_probs=98.5 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHCCCEEECCCCC-HHHH Q ss_conf 917886488753566-----6976026678437989999997268720787252133-44431010000023441-2367 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAE-KLSSRYEAEFIWDLHKG-VGSI 73 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 73 (208) |+|||||||+||||. .||||+||+|+|||+|+++.++..+...++++..+.. ................. .... T Consensus 1 MkAVILAaG~GtRl~PlT~~~PK~LLPv~n~PlI~y~L~~L~~~Gi~ei~vv~~~~~~~~i~~~~~~i~~~~~~~~~~~~ 80 (401) T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEYFEKKLKEISIVTQKDDIKGT 80 (401) T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHCTTCEEEECCTTCCBS T ss_pred CEEEEECCCCCCCCCCCCCCCCHHHCEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCH T ss_conf 96999888677677732489871433899812999999999987998899996887299999865984799943678753 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC-------------CCE---------------EC Q ss_conf 78888775049789982788768889999999998507987999738-------------923---------------20 Q T0593 74 AGIHAALRHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKH-------------DYP---------------EP 125 (208) Q Consensus 74 ~~~~~~~~~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~-------------~~~---------------~~ 125 (208) ..........+..+++.+|.++......... .........++... .++ .. T Consensus 81 ~~~~~~~~~~d~~~~v~~d~~~~~~~~~~~~--~~~~~~~i~~~~~~~p~~~g~~~~~~~~~v~~~~e~~~~~~s~~~~~ 158 (401) T 2ggo_A 81 GAAILSAKFNDEALIIYGDLFFSNEKEICNI--ITLKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINA 158 (401) T ss_dssp TTTGGGCCCSSEEEEEETTEEESCSHHHHHH--TTCSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSCSSCSCSEEEE T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHHH--HHHHHCEEEEEEECCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEE T ss_conf 3432243048966996055211460777766--65310658999801775584899779725999998588996552147 Q ss_pred CHHHCCHHHHHHHHHHHHH--CCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 2210006789999999871--205789999752612321450144228644203698989999999999971 Q T0593 126 LLAYYAESAADELERAILQ--GIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKM 195 (208) Q Consensus 126 ~~~~~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~ 195 (208) .........+..+...... +......+.... ........+ .....|+|++||+||..+...+.+. T Consensus 159 giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~di~~~~~~~~~~~~~l~~ 225 (401) T 2ggo_A 159 GIYKLNSDIFTYLDKISISERGELELTDAINLM----AKDHRVKVI-EYEGYWMDIGKPWNIIDVNKWALDN 225 (401) T ss_dssp EEEEEETHHHHHHHHSCCCSSSCBCHHHHHHHH----HHHSCEEEE-ECCSCEEECCSHHHHHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHH----HHHCCEEEE-EECCEEEECCCCHHHHHHHHHHHHC T ss_conf 765238478778986085757842355599998----730857999-9576541037733068899998733 No 27 >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Probab=99.75 E-value=6.5e-17 Score=115.37 Aligned_cols=194 Identities=15% Similarity=0.125 Sum_probs=108.7 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHH--HHHCCCEEECCCCCHHHHHHHHHH Q ss_conf 178864887535666976026678437989999997268720787252133444--310100000234412367788887 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLS--SRYEAEFIWDLHKGVGSIAGIHAA 79 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208) .+||+|+|.|||+.. |+|++++|+|||+|+++++...+...++|+++..+... .......................+ T Consensus 4 ~~iIpAR~gSkRlp~-Knl~~i~GkpLI~~~I~~~~~s~id~IiVsTd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (262) T 1vic_A 4 TVIIPARFASSRLPG-KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEV 82 (262) T ss_dssp EEEEECCCCCSSSTT-GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHHH T ss_pred EEEEECCCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHHH T ss_conf 999823878988997-1024509908999999999977989099981897520233311544212441048872477899 Q ss_pred HH-----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE---------------------CCCCEEC-------- Q ss_conf 75-----0497899827887688899999999985079879997---------------------3892320-------- Q T0593 80 LR-----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP---------------------KHDYPEP-------- 125 (208) Q Consensus 80 ~~-----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~---------------------~~~~~~~-------- 125 (208) .. ..+.++.+.+|.|+.++.+++.+++............ ..+.... T Consensus 83 ~~~~~~~~~~~vi~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (262) T 1vic_A 83 VEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPY 162 (262) T ss_dssp HHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSC T ss_pred HHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHCCCCCCEEEEECCCCCCHHHHCCCHHH T ss_conf 99840467867999957201101222011344302212210123442056232147641145455777451110041222 Q ss_pred ------------------------CHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCEE-E-ECCCCEEEECCCHHHCCCC Q ss_conf ------------------------2210006789999999871205789999752612-3-2145014422864420369 Q T0593 126 ------------------------LLAYYAESAADELERAILQGIRKILVPLERLNVV-Y-YPVEKLRKFDKELISFFNI 179 (208) Q Consensus 126 ------------------------~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~I 179 (208) ....+.+..+.. +.....-.+ ...+.+... . ..+..+..+......+++| T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l-e~~e~ie~~r~l~ng~~I~~~~~~~~~~~dI 238 (262) T 1vic_A 163 DRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQ---YVQWAPTQL-ENLEKLEQLRVLYNGERIHVELAKEVPAVGV 238 (262) T ss_dssp CHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHH---HHHSCCCHH-HHHHTCTTHHHHHTTCCEEEEECSSCCCCCC T ss_pred HHHHHHHHCCHHHCCCCCCEEEEEEEEECCHHHHHH---HCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCCC T ss_conf 001101100012202443100230021100565443---302799846-7777399999998799367999179998699 Q ss_pred CCHHHHHHHHHHHHHHCCCCC Q ss_conf 898999999999997155773 Q T0593 180 NTPDDLKRAEEICSKMSTEGL 200 (208) Q Consensus 180 dtpeDl~~a~~il~~~~~~~~ 200 (208) ||||||+.||.+|++..+... T Consensus 239 Dt~eDl~~ae~ilk~n~~~~~ 259 (262) T 1vic_A 239 DTAEDLEKVRAILAANGSHHH 259 (262) T ss_dssp CSHHHHHHHHHHHHHTCC--- T ss_pred CCHHHHHHHHHHHHHCCCCCC T ss_conf 799999999999997799764 No 28 >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* Probab=99.74 E-value=2.2e-17 Score=118.11 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=83.9 Q ss_pred CEEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCE--E-ECCCCCHHHHHH Q ss_conf 917886488753566--69760266784379899999972687207872521334443101000--0-023441236778 Q T0593 1 MKVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEF--I-WDLHKGVGSIAG 75 (208) Q Consensus 1 m~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ 75 (208) |+|||||||+||||. .||||+||+|+|||+|+++.+.+.+...++++..+..+....+.... . .......+...+ T Consensus 6 l~AVILAgG~gtRl~p~~PK~LLPi~nkPlI~y~l~~L~~~g~~eI~iv~~~~~~~i~~~l~~~~i~~i~q~~~~GTada 85 (456) T 2v0h_A 6 LSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANEQVNWVLQTEQLGTAHA 85 (456) T ss_dssp EEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTCCCEEEECSCCCCHHHH T ss_pred CEEEEECCCCCCCCCCCCCHHHEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCHHHH T ss_conf 57999788888768999986861899886999999999977999799990799899998726798499977887873999 Q ss_pred HHHHHHH---CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 8887750---4978998278876888999999999850798799 Q T0593 76 IHAALRH---FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208) Q Consensus 76 ~~~~~~~---~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208) +..+... .+.++++.+|.++.....+..+++.+..++..+. T Consensus 86 l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~i~ 129 (456) T 2v0h_A 86 VQQAAPFFKDNENIVVLYGDAPLITKETLEKLIEAKPENGIALL 129 (456) T ss_dssp HHHHGGGCCTTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEE T ss_pred HHHHHHHCCCCCCEEEECCCCEECCCHHHHHHHHHHHCCCCEEE T ss_conf 99865521456753674387202140438999987651794799 No 29 >3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A* Probab=99.73 E-value=5.4e-17 Score=115.84 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=84.9 Q ss_pred EEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCEEECC-CCCH Q ss_conf 17886488753566--6976026678437989999997268720787252133444310--------10000023-4412 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRY--------EAEFIWDL-HKGV 70 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~--------~~~~~~~~-~~~~ 70 (208) .+||||||+||||. .||||+||+|+|||+|+++.+.+.+...++++..+..+....+ ...+.... .... T Consensus 8 ~vVILAgG~GtRl~p~tPK~LlPiankPmI~y~L~~L~~aGi~eIiVv~~~~~e~I~~~i~~~~~~~~~~i~~v~q~~~l 87 (495) T 3dk5_A 8 AVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPL 87 (495) T ss_dssp EEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEESSCHHHHTTTTTTHHHHTTSCCEEEECSSCC T ss_pred EEEEECCCCCCCCCCCCCHHHCEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 69998675875689999778827898129999999998669987999958988999999987787629827999807989 Q ss_pred HHHHHHHHHHHHC-----CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 3677888877504-----9789982788768889999999998507987999 Q T0593 71 GSIAGIHAALRHF-----GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 71 ~~~~~~~~~~~~~-----~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) +..+++..++... +.++++.+|.++++.+.+..+++.+..++.++++ T Consensus 88 GTadAl~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~h~~~~~~~ti 139 (495) T 3dk5_A 88 GTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTV 139 (495) T ss_dssp CHHHHHHHHHTTSCTTCCSEEEEEESSCTTCCHHHHHHHHHHHHHTTCSEEE T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 7399999999861123456521112542323747899999987621551044 No 30 >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Probab=99.72 E-value=1.4e-16 Score=113.39 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=76.7 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHH--HHHHHHCCCEEECCCCCHHHHHHHHHH Q ss_conf 178864887535666976026678437989999997268720787252133--444310100000234412367788887 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAE--KLSSRYEAEFIWDLHKGVGSIAGIHAA 79 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208) -|||+|.|.|+|+.. |+|.+++|+|||+|++++++......++|+++..+ .........+................. T Consensus 20 iaiIpAR~gSkRlp~-KnL~~i~GkpLI~~~i~~a~~s~i~~viVsTd~~~i~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 98 (264) T 3k8d_A 20 VVIIPARYASTRLPG-KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEV 98 (264) T ss_dssp EEEEECCSCCSSSTT-GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHH T ss_pred EEEEECCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHEECCCEEEEECCCCCCCCHHHHHH T ss_conf 999815877888998-4001228951999999999966999679851333211221002430123215335664788887 Q ss_pred -----HHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf -----750497899827887688899999999985079879 Q T0593 80 -----LRHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDA 115 (208) Q Consensus 80 -----~~~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~ 115 (208) ....+.++.+.+|.|+++++.++.+++.+.....+. T Consensus 99 ~~~~~~~~~~~i~~~~~d~p~~~~~~i~~~i~~~~~~~~~~ 139 (264) T 3k8d_A 99 VEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGM 139 (264) T ss_dssp HHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSE T ss_pred HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 77623442100100202212211557777765404443333 No 31 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A* 2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A* Probab=99.72 E-value=4.9e-17 Score=116.06 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=81.5 Q ss_pred CEEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC--E-EECCCCCHHHHHH Q ss_conf 917886488753566--6976026678437989999997268720787252133444310100--0-0023441236778 Q T0593 1 MKVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE--F-IWDLHKGVGSIAG 75 (208) Q Consensus 1 m~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 75 (208) |+|||||||+||||. .||||+||+|+|||+|+++.+.+.+...++++..+..+....+... + ........+..++ T Consensus 6 ~~~VILa~G~GtRl~~~~PK~LlPv~n~PlI~y~l~~l~~~g~~eiivv~~~~~~~i~~~l~~~~i~~~~q~~~~GTada 85 (456) T 1hv9_A 6 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHA 85 (456) T ss_dssp EEEEEEECSCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEECSCHHHHHHHCCCTTEEEEECSSCCCHHHH T ss_pred CEEEEECCCCCCCCCCCCCHHHEEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCHHHH T ss_conf 42899878787667999985751899723999999999977998599993899899999756699489987898981999 Q ss_pred HHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 88877504---978998278876888999999999850798799 Q T0593 76 IHAALRHF---GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208) Q Consensus 76 ~~~~~~~~---~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208) +..+.... +.++++.+|..+........+..........++ T Consensus 86 l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (456) T 1hv9_A 86 MQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLL 129 (456) T ss_dssp HHHHGGGCCTTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEE T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 99998750334432100343222314567888876512333211 No 32 >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Probab=99.69 E-value=8e-16 Score=109.11 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=78.4 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHH---HHHHHCCCEEECCCCCHHHHHHHHH Q ss_conf 1788648875356669760266784379899999972687207872521334---4431010000023441236778888 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEK---LSSRYEAEFIWDLHKGVGSIAGIHA 78 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208) -+||+|.|.|+|+.. |+|.+++|+|||+|+++++..+.....|++.+.... ........+................ T Consensus 4 i~iIpAR~gSkRlp~-Knl~~i~GkpLi~~~i~~a~k~~~~d~Iivstd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (245) T 1h7e_A 4 VIVIPARYGSSRLPG-KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVE 82 (245) T ss_dssp EEEEECCSCCSSSTT-GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHHH T ss_pred EEEECCCCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHH T ss_conf 999737977877998-3133528963999999999967999979997566310013430596587468856675299999 Q ss_pred HHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 7750--497899827887688899999999985079879 Q T0593 79 ALRH--FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDA 115 (208) Q Consensus 79 ~~~~--~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~ 115 (208) +... .+.++.+.+|+||+.++.++.++..+....... T Consensus 83 ~~~~~~~d~ii~l~~~~P~~~~~~i~~~~~~~~~~~~~~ 121 (245) T 1h7e_A 83 VMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALP 121 (245) T ss_dssp HHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCC T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE T ss_conf 998549988999478778899899999986443024422 No 33 >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Probab=99.69 E-value=2e-16 Score=112.52 Aligned_cols=190 Identities=17% Similarity=0.158 Sum_probs=105.4 Q ss_pred CEEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHHCCCEEECCC----CCHHHH Q ss_conf 9178864887535666976026678437989999997268720787252133---444310100000234----412367 Q T0593 1 MKVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAE---KLSSRYEAEFIWDLH----KGVGSI 73 (208) Q Consensus 1 m~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~---~~~~~~~~~~~~~~~----~~~~~~ 73 (208) +.|||+|+|.|+|+.. |+|.+++|+|||+|+++++........|++.++.. .........+..... ...... T Consensus 4 i~aiIpAR~~S~R~p~-K~l~~i~gkpLi~~~i~~~~k~~~~~~Iiv~tdd~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (229) T 1qwj_A 4 LAALVLARGGSKGIPL-KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSL 82 (229) T ss_dssp EEEEEECCSCCSSSSC-TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCHH T ss_pred EEEEECCCCCCCCCCC-CCHHHHCCEEHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHH T ss_conf 9999345877868998-262565880789999999996699887999635101002000158510245452247730122 Q ss_pred HHHHHHHH---HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC---CCCEECC-----------HHH----C-C Q ss_conf 78888775---04978998278876888999999999850798799973---8923202-----------210----0-0 Q T0593 74 AGIHAALR---HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK---HDYPEPL-----------LAY----Y-A 131 (208) Q Consensus 74 ~~~~~~~~---~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~---~~~~~~~-----------~~~----~-~ 131 (208) ..+..+.. ..+.++.+.+|+||+.+++++.+++.+...+.+.++.. ....... ... . . T Consensus 83 ~~i~~~~~~~~~~~~~i~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (229) T 1qwj_A 83 DAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPR 162 (229) T ss_dssp HHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBSSSBTTBCCC T ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 22111112355566588723577766727899999999858998799998403560777653112345533101233233 Q ss_pred HHHHHHHHHHHHHCCHHH--HHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHC Q ss_conf 678999999987120578--99997526123214501442286442036989899999999999715 Q T0593 132 ESAADELERAILQGIRKI--LVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMS 196 (208) Q Consensus 132 ~~~~~~i~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~ 196 (208) ++-++.. +...|...+ ..++..- .+.......+..+....+||||+|||+.||+++.+-. T Consensus 163 ~qd~~~~--y~~~g~~~~~k~~~l~~~---~~~~~k~~~~~i~~~~sidIDt~eD~~~aE~ll~k~~ 224 (229) T 1qwj_A 163 RQDWDGE--LYENGSFYFAKRHLIEMG---YLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFG 224 (229) T ss_dssp TTTSCCE--EEEEEEEEEEEHHHHHTT---CSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHS T ss_pred HCCCCCE--EEEEEEEEEEEHHHHHHC---CCCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHC T ss_conf 3057761--898658999819999648---8668988999879563688999999999999999808 No 34 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A* 1g95_A* Probab=99.68 E-value=4.9e-16 Score=110.35 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=83.4 Q ss_pred EEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC-CEEECC-CCCHHHHHHHH Q ss_conf 17886488753566--697602667843798999999726872078725213344431010-000023-44123677888 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEA-EFIWDL-HKGVGSIAGIH 77 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 77 (208) .|||||||+||||. .||||+||+|+|||+|+++.+...+...++++..+..+....+.. ...... ....+...++. T Consensus 13 ~AvILagG~GtRl~p~~PK~LlPv~n~PlI~y~l~~L~~~gi~eiiiv~~~~~~~i~~~l~~~i~~~~~~~~~GTa~al~ 92 (468) T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVM 92 (468) T ss_dssp EEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSSSSEEEECSSCCCHHHHHH T ss_pred EEEEECCCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEECCCCCCHHHHHH T ss_conf 69998988888769899867748998009999999999779987999959978999998658988997479898399999 Q ss_pred HHHHHC----CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 877504----9789982788768889999999998507987999 Q T0593 78 AALRHF----GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 78 ~~~~~~----~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) .+.+.. +..+++..++.+++...+..+++.+..++..+++ T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 136 (468) T 1hm9_A 93 MTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATI 136 (468) T ss_dssp TTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEE T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 99997413677640466234102566799999987643123432 No 35 >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Probab=99.66 E-value=1.9e-16 Score=112.67 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=70.5 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECC-EEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC------------- Q ss_conf 917886488753566-----6976026678-437989999997268720787252133444310100------------- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCG-KKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE------------- 61 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~G-kpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~------------- 61 (208) ++|||||||+||||. .||+|+|++| +|||+|+++.+.+.+...++++.++.......+... T Consensus 21 ~~AVILAaG~GtRl~PlT~~~PK~LlPv~G~~PlI~y~l~~l~~~gi~~I~vv~~~~~~~i~~~i~~~~~~~~~~~~~~~ 100 (451) T 1yp2_A 21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 100 (451) T ss_dssp EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC T ss_pred CEEEEECCCCCCCCCHHHCCCCHHHEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 16999899886656863569786306989998599999999998799989999888879999999877776503422467 Q ss_pred ---EEECCC--C----CHHHHHHHHHHHHH-----CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf ---000234--4----12367788887750-----4978998278876888999999999850798799 Q T0593 62 ---FIWDLH--K----GVGSIAGIHAALRH-----FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208) Q Consensus 62 ---~~~~~~--~----~~~~~~~~~~~~~~-----~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208) ...... . ..+...++...... .++++++.+|.++... +..++..+...+..++ T Consensus 101 ~~~~~~~~~~~~~~~~~~~t~~al~~~~~~l~~~~~~~~lvl~gD~i~~~~--~~~~~~~~~~~~~~~~ 167 (451) T 1yp2_A 101 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD--YEKFIQAHRETDADIT 167 (451) T ss_dssp EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCC--HHHHHHHHHHTTCSEE T ss_pred CEEEEEEEEECCCCCHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH--HHHHHHHHHHHCCCCE T ss_conf 248855587314543000021699998776502688858998256334612--4556666665224632 No 36 >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Probab=99.56 E-value=4.9e-15 Score=104.60 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=70.7 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEE-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC------------E Q ss_conf 917886488753566-----697602667843-7989999997268720787252133444310100------------0 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKK-LIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE------------F 62 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkp-li~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~------------~ 62 (208) +.|||||||.||||. .||+|+||+|+| ||+|+++.+...+...++++..+.......+... . T Consensus 13 ~~AvILAaG~GtRl~plt~~~PK~LLpv~~kP~lI~y~L~~L~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 92 (420) T 3brk_X 13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESF 92 (420) T ss_dssp EEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEE T ss_pred CEEEEECCCCCCCCCHHHCCCCHHEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 86999899774667810069774326999886999999999997797989999788989999999777875333114744 Q ss_pred --------EECCCCCHHHHHHHHHHHHH-----CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf --------00234412367788887750-----4978998278876888999999999850798799 Q T0593 63 --------IWDLHKGVGSIAGIHAALRH-----FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208) Q Consensus 63 --------~~~~~~~~~~~~~~~~~~~~-----~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208) ........+...++..++.. .+.++++.+|.. ....+..+++.+.+++..++ T Consensus 93 ~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~flv~~~D~i--~~~~l~~~l~~h~~~~~~~t 157 (420) T 3brk_X 93 DILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHI--YKMDYEYMLQQHVDSGADVT 157 (420) T ss_dssp EEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCE--ECBCTHHHHHHHHHTTCSEE T ss_pred EECCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCHHHHHHHHHHCCCCCE T ss_conf 761636886146334772899999999875369976999888622--23456999999997599967 No 37 >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} SCOP: b.81.4.1 c.68.1.20 Probab=99.48 E-value=2.7e-13 Score=94.56 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=68.2 Q ss_pred CE--EEEECCCCCCCC----C--CCCCCEEE-CCEEHHHHHHHHHHHCC-CCEEEE-ECCHHHHHHHHHCCC--EEECCC Q ss_conf 91--788648875356----6--69760266-78437989999997268-720787-252133444310100--000234 Q T0593 1 MK--VAVLVGGVGRRI----G--MEKTEVML-CGKKLIEWVLEKYSPFQ-TVFVCR-DEKQAEKLSSRYEAE--FIWDLH 67 (208) Q Consensus 1 m~--~vIlAaG~gtRl----g--~pK~ll~i-~Gkpli~~~i~~l~~~~-~~~~iv-~~~~~~~~~~~~~~~--~~~~~~ 67 (208) || +||||||.|||| . .||||+|+ +|+|||+++++++.+.. ...+++ +.............. +...+. T Consensus 1 Mki~aVILAGG~GtRLwPlS~~~~PKq~l~i~g~~sll~~t~~r~~~~~~~~~i~iv~~~~~~~~~~~~~~~~~ii~Ep~ 80 (337) T 2cu2_A 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEPL 80 (337) T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEESS T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCC T ss_conf 98128996797304378755679993310069999899999997636588676399972789999742301222224410 Q ss_pred CCHHHHHHHHH----H-HHHCCCEEEEECCCCCCCHHHHHHHHHHHH---CCCCEEEE Q ss_conf 41236778888----7-750497899827887688899999999985---07987999 Q T0593 68 KGVGSIAGIHA----A-LRHFGSCVVAAIDMPFVKPEVLEHLYKEGE---KAGCDALI 117 (208) Q Consensus 68 ~~~~~~~~~~~----~-~~~~~~~lv~~~D~p~~~~~~i~~l~~~~~---~~~~~~~v 117 (208) + .+...++.. . ....+.++++++|..+...+.....+.... +.+..+++ T Consensus 81 ~-rnTa~ai~~a~~~~~~~~~d~vlVlpsDh~i~~~~~f~~~i~~a~~~a~~~~~vt~ 137 (337) T 2cu2_A 81 G-RDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVAL 137 (337) T ss_dssp C-CHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEE T ss_pred C-CCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 3-57666313445555315786168843530135308878778889999864985886 No 38 >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori 26695} Probab=99.44 E-value=8.7e-13 Score=91.67 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=67.3 Q ss_pred CEEEEECCCCCCCCC------CCCCCEEE-CCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------CCCEEECCC Q ss_conf 917886488753566------69760266-78437989999997268720787252133444310------100000234 Q T0593 1 MKVAVLVGGVGRRIG------MEKTEVML-CGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRY------EAEFIWDLH 67 (208) Q Consensus 1 m~~vIlAaG~gtRlg------~pK~ll~i-~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~------~~~~~~~~~ 67 (208) |++||||||.||||- .||||+|+ +++||++++++++.......+|++........... ...+....+ T Consensus 5 mk~VILAGG~GtRLwPlS~~~~PKq~l~i~g~~sll~~tl~r~~~~~~~~~IVt~~~~~~~~~~~~~~~~~~~~i~ii~E 84 (308) T 2qh5_A 5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLE 84 (308) T ss_dssp EEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTTCSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEE T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 06999789632347876668999600373989999999999771779995999897998688888776405665542367 Q ss_pred C-CHHHHHHHHHH-H-H-HCCCEEEEECCCCCCCHHHHHHHHHHH---HCCCCEEEE Q ss_conf 4-12367788887-7-5-049789982788768889999999998---507987999 Q T0593 68 K-GVGSIAGIHAA-L-R-HFGSCVVAAIDMPFVKPEVLEHLYKEG---EKAGCDALI 117 (208) Q Consensus 68 ~-~~~~~~~~~~~-~-~-~~~~~lv~~~D~p~~~~~~i~~l~~~~---~~~~~~~~v 117 (208) + ..+...++..+ + . ..+.++++++|..+-........++.+ .+.+..+++ T Consensus 85 p~~~nta~Ai~~a~~~~~~~~~vlVlpsDh~i~d~~~f~~~i~~~~~~~~~~~ivt~ 141 (308) T 2qh5_A 85 SLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTF 141 (308) T ss_dssp SSCCCHHHHHHHHHHTSCTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 444653799999998638997699955513204206789999999999736977872 No 39 >2i5e_A Hypothetical protein MM_2497; APC86122, hypothetic protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei GO1} SCOP: c.68.1.21 Probab=98.36 E-value=1.7e-06 Score=55.54 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=88.6 Q ss_pred CEEEEEC--CCCCCCCCC---CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHH Q ss_conf 9178864--887535666---97602667843798999999726872078725213344431010000023441236778 Q T0593 1 MKVAVLV--GGVGRRIGM---EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAG 75 (208) Q Consensus 1 m~~vIlA--aG~gtRlg~---pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (208) |.|||.- +.-=|||.. +..=. ---+-|+.++++.++..+...++++................. ...+...+ T Consensus 4 m~aviP~K~~~aKTRL~~~L~~~~r~-~L~~~ml~~~l~~l~~~~~~~vi~vt~~~~~~~~~~~~~~~~---~~~~L~~a 79 (211) T 2i5e_A 4 MRAVIPYKKAGAKSRLSPVLSLQERE-EFVELMLNQVISSLKGAGIEQVDILSPSVYGLEEMTEARVLL---DEKDLNEA 79 (211) T ss_dssp CEEEEECCCTTTTGGGTTTSCHHHHH-HHHHHHHHHHHHHHHHTTCSEEEEEESSCTTCSSCCSSEEEE---CCSCHHHH T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCC---CCCCHHHH T ss_conf 59998779998876877538999999-999999999999998489838999859677888851588565---78888999 Q ss_pred HHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 888775-0497899827887688899999999985079879997389232022100067899999998712057899997 Q T0593 76 IHAALR-HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPLE 154 (208) Q Consensus 76 ~~~~~~-~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 154 (208) +..++. ..+.++++.+|.|.++++.+..+++ +....+..|..++.....++..+..+. ..-|..+...-.+ T Consensus 80 l~~a~~~~~~~vlligsDlP~L~~~~i~~a~~---~~~d~Vi~Pa~DGG~n~l~~~~~~~~~-----f~~g~~S~~~h~~ 151 (211) T 2i5e_A 80 LNRYLKEAEEPVLIVMADLPLLSPEHIKEISS---TEKDVCIVPGKGGGTNALFIKNPSKYR-----VKYYGSSFLTHCS 151 (211) T ss_dssp HHHHHHHCCSCEEEECSCCTTCCHHHHHHHTT---CSSSEEEEECGGGCEEEEEESCGGGCC-----CCCSSSHHHHHHH T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH---CCCCEEEEECCCCCEEEEEECCCCCCC-----CCCCCCHHHHHHH T ss_conf 99999727785899526635289999999986---699789981389986068753776667-----7778516999999 Q ss_pred HCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHH Q ss_conf 5261232145014422864420369898999999 Q T0593 155 RLNVVYYPVEKLRKFDKELISFFNINTPDDLKRA 188 (208) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a 188 (208) ..... .-.+. ....+...+||||||||..+ T Consensus 152 ~a~~~---gl~~~-~~~~~~l~~DIDtpeDL~~l 181 (211) T 2i5e_A 152 IATDS---GQDFE-IYDSFMAGTDIDEPEDLVEL 181 (211) T ss_dssp HHHTT---TCCEE-ECCCTTTTCCCCSHHHHHHH T ss_pred HHHHC---CCCEE-EECCCCCCCCCCCHHHHHHH T ss_conf 99987---99589-81676536279998999999 No 40 >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Desulfovibrio desulfuricans subsp} Probab=98.30 E-value=2.5e-06 Score=54.54 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=59.0 Q ss_pred EEHHHHHHHHHHHCCCCEEEEE-CCHH--HHHHHHH-CCCEEECCCCCHHHHHHHHHHH-----HHCCCEEEEECCCCCC Q ss_conf 4379899999972687207872-5213--3444310-1000002344123677888877-----5049789982788768 Q T0593 26 KKLIEWVLEKYSPFQTVFVCRD-EKQA--EKLSSRY-EAEFIWDLHKGVGSIAGIHAAL-----RHFGSCVVAAIDMPFV 96 (208) Q Consensus 26 kpli~~~i~~l~~~~~~~~iv~-~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lv~~~D~p~~ 96 (208) +-|+.++++.+........+++ .... ....... ..........+.+....+..+. ..++.++++.+|+|.+ T Consensus 37 ~~ml~~tl~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~q~g~~Lg~rm~~a~~~~~~~g~~~vliig~DiP~L 116 (242) T 3cgx_A 37 RHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLGPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDY 116 (242) T ss_dssp HHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHCTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC T ss_conf 99999999999847996499998288512678887527553242578999899999999999845998489968870215 Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCEECCH Q ss_conf 8899999999985079879997389232022 Q T0593 97 KPEVLEHLYKEGEKAGCDALIPKHDYPEPLL 127 (208) Q Consensus 97 ~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~ 127 (208) +++.++.+++....++ .+..|..++..... T Consensus 117 ~~~~l~~a~~~l~~~~-vVi~Ps~DGG~~li 146 (242) T 3cgx_A 117 PCELVQKALNDLQHYD-AAIGPAFDGGYYLI 146 (242) T ss_dssp CHHHHHHHHHHTTTCS-EEEEEBTTSSEEEE T ss_pred CHHHHHHHHHHHCCCC-EEEECCCCCCEEEE T ss_conf 9799999999836999-89951778987899 No 41 >2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A Probab=97.93 E-value=6e-06 Score=52.38 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=35.5 Q ss_pred EEEECCCCCCCCC--CCCCCEEEC-CEEHHHHHHHHHH------HCCCCEEEEECC Q ss_conf 7886488753566--697602667-8437989999997------268720787252 Q T0593 3 VAVLVGGVGRRIG--MEKTEVMLC-GKKLIEWVLEKYS------PFQTVFVCRDEK 49 (208) Q Consensus 3 ~vIlAaG~gtRlg--~pK~ll~i~-Gkpli~~~i~~l~------~~~~~~~iv~~~ 49 (208) +|+||||+||||| .||-++++. |+++++..++++. ......++-++. T Consensus 82 vv~LaGGlGTrlG~~~pK~~~~v~~~~tfldl~~~qi~~l~~~~g~~IPl~iMtS~ 137 (469) T 2icy_A 82 VLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSF 137 (469) T ss_dssp EEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECT T ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 99956887444589987360584899809999999999999985999658996776 No 42 >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Probab=97.92 E-value=5.5e-06 Score=52.63 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=34.8 Q ss_pred EEEECCCCCCCCC--CCCCCEEEC-CEEHHHHHHHHHHH------CCCCEEEEEC Q ss_conf 7886488753566--697602667-84379899999972------6872078725 Q T0593 3 VAVLVGGVGRRIG--MEKTEVMLC-GKKLIEWVLEKYSP------FQTVFVCRDE 48 (208) Q Consensus 3 ~vIlAaG~gtRlg--~pK~ll~i~-Gkpli~~~i~~l~~------~~~~~~iv~~ 48 (208) +|+||||+||||| +||-++++. |+++++..+++... .....++.++ T Consensus 95 vv~LaGGlGTrlG~~~pK~~~~v~~~~tfldl~~~qi~~l~~~~~~~iPl~iMtS 149 (488) T 2i5k_A 95 VLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNS 149 (488) T ss_dssp EEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECC T ss_pred EEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 9995688424458998737456389980999999999999997299976899457 No 43 >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural genomics, structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Probab=97.88 E-value=1e-05 Score=51.07 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=34.7 Q ss_pred EEEECCCCCCCCC--CCCCCEEEC-CEEHHHHHHHHHHH------CCCCEEEEEC Q ss_conf 7886488753566--697602667-84379899999972------6872078725 Q T0593 3 VAVLVGGVGRRIG--MEKTEVMLC-GKKLIEWVLEKYSP------FQTVFVCRDE 48 (208) Q Consensus 3 ~vIlAaG~gtRlg--~pK~ll~i~-Gkpli~~~i~~l~~------~~~~~~iv~~ 48 (208) +|.||||+||||| +||-+++|. |+++++..+++... .....++-++ T Consensus 79 vikLnGGlGTrlG~~~pK~~~~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS 133 (484) T 3gue_A 79 VLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNS 133 (484) T ss_dssp EEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEEC T ss_pred EEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 9995798755458999707778599990999999999999998599987899799 No 44 >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Probab=97.85 E-value=1.1e-05 Score=50.89 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=34.5 Q ss_pred EEEECCCCCCCCC--CCCCCEEEC-CEEHHHHHHHHHHH----CC--CCEEEEEC Q ss_conf 7886488753566--697602667-84379899999972----68--72078725 Q T0593 3 VAVLVGGVGRRIG--MEKTEVMLC-GKKLIEWVLEKYSP----FQ--TVFVCRDE 48 (208) Q Consensus 3 ~vIlAaG~gtRlg--~pK~ll~i~-Gkpli~~~i~~l~~----~~--~~~~iv~~ 48 (208) +|.||||+||||| +||-+++|. |+++++..++++.. .+ ...++-++ T Consensus 78 vlkLnGGlGTrmG~~~pKs~i~V~~~~tfldl~~~qi~~l~~~~g~~IPl~iMtS 132 (505) T 2oeg_A 78 VLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDS 132 (505) T ss_dssp EEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEEC T ss_pred EEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 9994798755568998837777699980999999999999998599964899788 No 45 >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Probab=97.79 E-value=2.2e-05 Score=49.13 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.4 Q ss_pred EEEEECCCCCCCCC--CCCCCEEE---CCEEHHHHHHHHHH Q ss_conf 17886488753566--69760266---78437989999997 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVML---CGKKLIEWVLEKYS 37 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i---~Gkpli~~~i~~l~ 37 (208) -+|+||||+||||| .||-++++ .|+++++..++++. T Consensus 104 avvllaGG~GtRLG~~~pK~~~~v~l~~~ktl~ql~~e~i~ 144 (505) T 1jv1_A 104 AVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERIL 144 (505) T ss_dssp EEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH T ss_conf 99997898556679888850203056788749999999999 No 46 >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-acetylglucosamine, N-acetylglucosamine- 1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Probab=97.67 E-value=3.4e-05 Score=48.05 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=30.6 Q ss_pred EEEEECCCCCCCCC--CCCCCEEEC---CEEHHHHHHHHHH Q ss_conf 17886488753566--697602667---8437989999997 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVMLC---GKKLIEWVLEKYS 37 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i~---Gkpli~~~i~~l~ 37 (208) -+|+||||+||||| .||-++|++ ++++++..++++. T Consensus 105 avvllaGG~GtRLG~~~pKg~~~i~~~s~ksl~ql~~e~i~ 145 (486) T 2yqc_A 105 AVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKIL 145 (486) T ss_dssp EEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99997788654468788876421258999839999999999 No 47 >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI- II, NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis nctc 9343} Probab=45.70 E-value=13 Score=16.02 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=52.2 Q ss_pred CCEEHHHHHHHHHHHCC--CCEEEEECC----HHHHHHHHH---CCCEEECCCCCHHHHHHHHHHHHHCC-CEEEEECCC Q ss_conf 78437989999997268--720787252----133444310---10000023441236778888775049-789982788 Q T0593 24 CGKKLIEWVLEKYSPFQ--TVFVCRDEK----QAEKLSSRY---EAEFIWDLHKGVGSIAGIHAALRHFG-SCVVAAIDM 93 (208) Q Consensus 24 ~Gkpli~~~i~~l~~~~--~~~~iv~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lv~~~D~ 93 (208) +....|..+++.+.+.. ...++++.+ ......... ............+...+...+++.+. +++++..|. T Consensus 15 N~~~~l~~~l~Sl~~q~~~~~EIiivDd~S~d~t~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~gi~~a~~d~i~~ld~D 94 (240) T 3bcv_A 15 NVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGLDVATGEYVAFCDSD 94 (240) T ss_dssp SCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHCCSSEEEECCTT T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCC T ss_conf 88899999999998087989799999899980578887765114442036224679879999999996577989997798 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 768889999999998507987999 Q T0593 94 PFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 94 p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) .++.++.++.+++.+.+.+.++++ T Consensus 95 ~~~~~~~l~~~~~~~~~~~~d~v~ 118 (240) T 3bcv_A 95 DYVDSDMYMTMYNVAQKYTCDAVF 118 (240) T ss_dssp CCCCTTHHHHHHHHHHHHTCSEEE T ss_pred CEECCCHHHHHHHHHHHCCCCEEE T ss_conf 505830899999999818998999 No 48 >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Probab=32.33 E-value=21 Score=14.78 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=54.3 Q ss_pred EEE-CCEEHHHHHHHHHHHCC---CCEEEEEC----CHHHHHHHHHCCCEE------ECCCCCHHHHHHHHHHHHHCC-- Q ss_conf 266-78437989999997268---72078725----213344431010000------023441236778888775049-- Q T0593 21 VML-CGKKLIEWVLEKYSPFQ---TVFVCRDE----KQAEKLSSRYEAEFI------WDLHKGVGSIAGIHAALRHFG-- 84 (208) Q Consensus 21 l~i-~Gkpli~~~i~~l~~~~---~~~~iv~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-- 84 (208) +|. |...-|..+++.+.+.. ...+|++. +...+........+. .....+.|...++..++..+. T Consensus 54 IP~yNe~~~I~~~l~si~~~~~~~~~EIIVVDDgStD~T~ei~~~~~a~v~~~~~~~~~~~~n~G~g~A~n~G~~~A~gd 133 (329) T 3ckj_A 54 LPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGD 133 (329) T ss_dssp EEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHHHHHHCCCS T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 81687888999999999852469996899998989540899999843301465326873455578899999999973636 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 789982788768889999999998507987999 Q T0593 85 SCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 85 ~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) .++++.+|.-...++.+..++..+.......++ T Consensus 134 ~i~~lDaD~~~~~p~~l~~l~~~l~~~~~~~~v 166 (329) T 3ckj_A 134 IVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV 166 (329) T ss_dssp EEEECCTTEESCCTTHHHHHHHHHHSCSSCCEE T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 589982788889999999999999809985478 No 49 >1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1 Probab=28.75 E-value=25 Score=14.42 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=18.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 03698989999999999971557 Q T0593 176 FFNINTPDDLKRAEEICSKMSTE 198 (208) Q Consensus 176 ~~~IdtpeDl~~a~~il~~~~~~ 198 (208) ++.=..||||+.|.++++.+-.+ T Consensus 16 LLkS~~PeDLq~ANrLIK~mVke 38 (45) T 1j2j_B 16 LLKSSHPEDLRAANKLIKEMVQE 38 (45) T ss_dssp HHTCSCHHHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHHHH T ss_conf 98259878999999999999988 No 50 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Probab=24.00 E-value=24 Score=14.47 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=39.0 Q ss_pred CEEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHC--CCCEEEEECCHHH-H---HHHHHCCCEEECC----CCCH Q ss_conf 917886488753566697602667843798999999726--8720787252133-4---4431010000023----4412 Q T0593 1 MKVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPF--QTVFVCRDEKQAE-K---LSSRYEAEFIWDL----HKGV 70 (208) Q Consensus 1 m~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~--~~~~~iv~~~~~~-~---~~~~~~~~~~~~~----~~~~ 70 (208) |+.+||+.|.|| -++.++++++.- ...++.++++... . ............. .... T Consensus 1 Mki~il~SG~Gs---------------nl~~ll~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (212) T 1jkx_A 1 MNIVVLISGNGS---------------NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSRE 65 (212) T ss_dssp CEEEEEESSCCH---------------HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHH T ss_pred CEEEEEEECCCH---------------HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCHH T ss_conf 979999826847---------------89999998870999988999997898627788877505650565123579988 Q ss_pred HHHHHHHHHHHHCCCEEEEE-CCCCCCCHHHHHH Q ss_conf 36778888775049789982-7887688899999 Q T0593 71 GSIAGIHAALRHFGSCVVAA-IDMPFVKPEVLEH 103 (208) Q Consensus 71 ~~~~~~~~~~~~~~~~lv~~-~D~p~~~~~~i~~ 103 (208) ..-..+...+......+++. +=+-.+++++++. T Consensus 66 ~~~~~~~~~l~~~~~Dliv~~g~~~il~~~il~~ 99 (212) T 1jkx_A 66 AYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSH 99 (212) T ss_dssp HHHHHHHHHHGGGCCSEEEESSCCSCCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECHHHHCCHHHHHH T ss_conf 9999999999970999999815245579999865 No 51 >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* Probab=22.30 E-value=33 Score=13.72 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=15.5 Q ss_pred EEEEECCCCCCCCCCC-CCCEEECCEEHHHHHHHHHHHCCCC Q ss_conf 1788648875356669-7602667843798999999726872 Q T0593 2 KVAVLVGGVGRRIGME-KTEVMLCGKKLIEWVLEKYSPFQTV 42 (208) Q Consensus 2 ~~vIlAaG~gtRlg~p-K~ll~i~Gkpli~~~i~~l~~~~~~ 42 (208) ++||++||..++=|.. .-|+.. +.+++..+.+.+.+.+.. T Consensus 76 Divvi~aG~~rkpg~~R~dll~~-Na~I~~~i~~~i~~~~p~ 116 (317) T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSK-NLKIFKSIVGEVMASKFD 116 (317) T ss_dssp SEEEECCCCCCCTTCCHHHHHHH-HHHHHHHHHHHHHHTTCC T ss_pred CEEEEECCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCC T ss_conf 48998325555888752567777-788887776663026775 No 52 >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Probab=20.89 E-value=27 Score=14.23 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=10.7 Q ss_pred CEEEEECCCCCC Q ss_conf 917886488753 Q T0593 1 MKVAVLVGGVGR 12 (208) Q Consensus 1 m~~vIlAaG~gt 12 (208) ||+.|++||.|+ T Consensus 4 mki~il~GG~S~ 15 (322) T 2fb9_A 4 MRVLLIAGGVSP 15 (322) T ss_dssp CCEEEEEECSST T ss_pred CEEEEEECCCCC T ss_conf 789999387873 Done!