Query T0593 3NGW, Archaeoglobus fulgidus, 208 residues
Match_columns 208
No_of_seqs 108 out of 6539
Neff 10.4
Searched_HMMs 11830
Date Mon Jul 5 09:11:42 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0593.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0593.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01128 IspD: Uncharacterized 99.9 1.6E-24 1.4E-28 157.4 13.0 192 1-194 1-221 (221)
2 PF00483 NTP_transferase: Nucl 99.8 1.6E-20 1.3E-24 134.6 10.8 188 2-194 1-247 (248)
3 PF02348 CTP_transf_3: Cytidyl 99.6 3.7E-17 3.2E-21 115.1 2.6 191 2-193 1-207 (217)
4 PF01983 CofC: Guanylyl transf 98.3 4.7E-07 4E-11 57.1 5.2 168 1-188 1-182 (217)
5 PF01704 UDPGP: UTP--glucose-1 97.7 7.2E-06 6.1E-10 50.3 3.2 46 3-48 59-113 (420)
6 PF09837 DUF2064: Uncharacteri 91.2 0.25 2.1E-05 24.3 6.1 96 33-129 2-107 (122)
7 PF00535 Glycos_transf_2: Glyc 42.9 7.6 0.00064 15.8 7.6 96 20-116 3-111 (169)
8 PF01820 Dala_Dala_lig_N: D-al 30.2 5.9 0.0005 16.4 0.7 13 1-13 1-13 (117)
9 PF07959 Fucokinase: L-fucokin 27.3 8.2 0.00069 15.6 1.0 18 7-24 1-22 (413)
10 PF11288 DUF3089: Protein of u 18.9 5.9 0.0005 16.4 -1.1 31 4-35 97-129 (200)
No 1
>PF01128 IspD: Uncharacterized protein family UPF0007; InterPro: IPR001228 The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.; GO: 0008299 isoprenoid biosynthetic process; PDB: 1w77_A 1w55_A 1w57_A 1vpa_A 3d5n_G 2vsh_B 2vsi_B 3f1c_A 1vgz_B 1vgw_C ....
Probab=99.92 E-value=1.6e-24 Score=157.44 Aligned_cols=192 Identities=19% Similarity=0.253 Sum_probs=115.7
Q ss_pred CEEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCC-CEEEE-ECCHHHHHHHHHC--CCEEECCCCCHHHHH
Q ss_conf 917886488753566--69760266784379899999972687-20787-2521334443101--000002344123677
Q T0593 1 MKVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQT-VFVCR-DEKQAEKLSSRYE--AEFIWDLHKGVGSIA 74 (208)
Q Consensus 1 m~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 74 (208)
|.+||||||.||||| .||+|++++|||||+|+++++..... ..+++ +..+......... ..+. ....+.....
T Consensus 1 V~aIIlAAG~GsRmg~~~pKq~l~l~Gkpil~~~l~~~~~~~~i~~Ivvv~~~~~~~~~~~l~~~~~v~-~v~gg~~r~~ 79 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLPLGGKPILEHTLEAFLASPDIDEIVVVVPPEDIDYIKELLSDKRVK-VVEGGATRQD 79 (221)
T ss_dssp EEEEEEE----TTT-SSS-GGGSBSSSSBHHHHHHHHHHTTTTECEEEEEESGGGHHHHHCCHHHTTEE-EE-TT--HHH
T ss_pred CEEEEECCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCCE-EECCCCHHHH
T ss_conf 989997898650169699842606999998999999983678998799991778999999863037837-7469527789
Q ss_pred HHHHHHHH----CCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCEE-EEECCCCEECCH------------HHC---CHH
Q ss_conf 88887750----4978998278876888999999999850-79879-997389232022------------100---067
Q T0593 75 GIHAALRH----FGSCVVAAIDMPFVKPEVLEHLYKEGEK-AGCDA-LIPKHDYPEPLL------------AYY---AES 133 (208)
Q Consensus 75 ~~~~~~~~----~~~~lv~~~D~p~~~~~~i~~l~~~~~~-~~~~~-~v~~~~~~~~~~------------~~~---~~~ 133 (208)
++.+++.. .+.++++.+|+||++++.++++++.+.+ .+..+ +++..+.+.... .+| +++
T Consensus 80 Sv~~gL~~l~~~~d~VlIhda~rP~v~~~~i~~li~~~~~~~~a~i~~~pv~DTik~v~~~~~i~~t~~R~~l~~~QTPQ 159 (221)
T PF01128_consen 80 SVRNGLAALEDDADIVLIHDADRPFVSPEIIDRLIEAAREGYGAAIPAIPVTDTIKRVDDDGFITETLDRSKLWRVQTPQ 159 (221)
T ss_dssp HHHHHHHHHHHCSSEEEEEETTSTTS-HHHHHHHHHHHCCTSSEEEEEEE-SSEEEEECTTSBEEEEE-GGGEEEEESEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCEEEECCCHHHHEEEECCC
T ss_conf 99999998525578799941776789999999999998751565589861435089942798066417858812210876
Q ss_pred HH--HHHHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 89--99999987120578999975261232145014422864420369898999999999997
Q T0593 134 AA--DELERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSK 194 (208)
Q Consensus 134 ~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~ 194 (208)
.+ ..+.....+.......+++........+..+..+..+... +.|+|||||+.||.++++
T Consensus 160 ~F~~~~l~~a~~~~~~~~~~~tDda~~~~~~g~~v~~v~G~~~N-~KIT~p~Dl~~ae~ll~~ 221 (221)
T PF01128_consen 160 AFRYELLLEAYEKADEEGIEFTDDASLVERAGHKVKIVEGSRDN-IKITTPEDLELAEALLKQ 221 (221)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSSHHHHHHHGSS-EEEE---TTG-----SHHHHHHHHHHHH-
T ss_pred EEEHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHCC
T ss_conf 63599999999998864997541999999779974999348741-347799999999999609
No 2
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 This domain is found in a wide range of enzymes which transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1lvw_B 1g97_A 1hm8_B 1g95_A 1hm9_A 1hm0_B 1fwy_A 2oi5_B 2oi6_B 2oi7_A ....
Probab=99.83 E-value=1.6e-20 Score=134.55 Aligned_cols=188 Identities=21% Similarity=0.218 Sum_probs=113.9
Q ss_pred EEEEECCCCCCCCC-----CCCCCEEECCE-EHHHHHHHHHHHCCCCE-EEEECCHHHHHHHHHCC--------CEEECC
Q ss_conf 17886488753566-----69760266784-37989999997268720-78725213344431010--------000023
Q T0593 2 KVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPFQTVF-VCRDEKQAEKLSSRYEA--------EFIWDL 66 (208)
Q Consensus 2 ~~vIlAaG~gtRlg-----~pK~ll~i~Gk-pli~~~i~~l~~~~~~~-~iv~~~~~~~~~~~~~~--------~~~~~~ 66 (208)
||||||||+||||. .||+|+|+.|+ |||+|+++.+...+... ++++..+.......+.. ......
T Consensus 1 KavIlAaG~GtRl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g~~~iivV~~~~~~~~i~~~l~~~~~~~~~i~~~~q 80 (248)
T PF00483_consen 1 KAVILAAGKGTRLRPLTDNRPKPLLPIGGKYPLIEYVLENLAKAGIDEIIVVVTGYKEEQIEEYLKDGSDWGVKIEYIVQ 80 (248)
T ss_dssp EEEEEE-----TTTTTTTSSSGGGSEETTECBHHHHHHHHHHHTT-SEEEEEEETTTHHHHHHHTTTHHHHHEEEEEEEE
T ss_pred CEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEE
T ss_conf 97999998854371114175554351458874201033343135773389875045520366520125434542134320
Q ss_pred CCCHHHHHHHHHHHHHCC------CEEEEECCCCCCCHHHHHHHHHHHHCCCC--EEEE---E-------------CCCC
Q ss_conf 441236778888775049------78998278876888999999999850798--7999---7-------------3892
Q T0593 67 HKGVGSIAGIHAALRHFG------SCVVAAIDMPFVKPEVLEHLYKEGEKAGC--DALI---P-------------KHDY 122 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~------~~lv~~~D~p~~~~~~i~~l~~~~~~~~~--~~~v---~-------------~~~~ 122 (208)
....+...++..+....+ .++++.+|..+.. .+..+++.+.+++. .+++ + ..++
T Consensus 81 ~~~~Gt~~al~~a~~~~~~~~~~~~~lv~~~D~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~d~~~~ 158 (248)
T PF00483_consen 81 PEPLGTAGALLCALEFLKEEDDDEDFLVLNGDILFDI--DLRDLLEFHRESGADITVTILLVPVEDPSRYGVVEVDEDGR 158 (248)
T ss_dssp SSCC-BTHHHHHTHTTSCTTSE-SEEEEETTEEEESC--HHHHHHHHHHHHTCSEEEEEEEEECSSGGG--EEEEETTCE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHH--HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEECCCEE
T ss_conf 2347874301333566540457513799558402157--79999999863235417886555012144544898558704
Q ss_pred ----------------EECCHHHCCHHHHHHHHHHHHH---CCHHHHHHHHHCCEEEECCCCEEEECCCHH-HCCCCCCH
Q ss_conf ----------------3202210006789999999871---205789999752612321450144228644-20369898
Q T0593 123 ----------------PEPLLAYYAESAADELERAILQ---GIRKILVPLERLNVVYYPVEKLRKFDKELI-SFFNINTP 182 (208)
Q Consensus 123 ----------------~~~~~~~~~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Idtp 182 (208)
......++++..+..+...+.. +.+.+.+.+..+ .-.......+..... .|+||+||
T Consensus 159 V~~~~EKp~~~~~~~~~~~G~Y~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l---~~~~~~~~~~~~~~~~~W~DiGt~ 235 (248)
T PF00483_consen 159 VIDFVEKPDNPEASNLVNAGIYIFNPEILDELLELLEPSERGEDELTDAIPWL---IKEGKRVVAYPFEGSAYWIDIGTP 235 (248)
T ss_dssp EEEE-SSCSSHSTSSEEEE-EEEEETHHHHHHHHHCHCSCHHSBHHHHHHHHH---HHHSEEEEEEEESSGE-EEE---H
T ss_pred EEEEEECCCCCCEEEEEECCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHH---HHHCCCEEEEEECCCEEEECCCCH
T ss_conf 99998536655200489733499858999999975443656532799999999---971995599994698536658999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999997
Q T0593 183 DDLKRAEEICSK 194 (208)
Q Consensus 183 eDl~~a~~il~~ 194 (208)
+||.+|++-+.+
T Consensus 236 ~~~~~a~~~l~~ 247 (248)
T PF00483_consen 236 EDYLEANEDLLN 247 (248)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHC
T ss_conf 999999688655
No 3
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases . The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 1h7h_A 1h7f_A 1h7t_B 1gq9_A 1h7e_B 1h7g_A 1gqc_B 1qwj_D 1ezi_B 1eyr_B ....
Probab=99.62 E-value=3.7e-17 Score=115.15 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=103.6
Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHH---HHHHHHHCCCEEECCCCCHHHHHHHHH
Q ss_conf 17886488753566697602667843798999999726872078725213---344431010000023441236778888
Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQA---EKLSSRYEAEFIWDLHKGVGSIAGIHA 78 (208)
Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208)
-|||+|.|.||||.+ |+|.+++|||||+|++++++.+....-|++.+.. ..........+............+...
T Consensus 1 iaiI~AR~gS~rlp~-K~l~~l~GkpLi~~~i~~a~~s~~~d~VvVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~ 79 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG-KNLKPLNGKPLIEHVIERAKKSKLIDKVVVSTDDEEIADIAEKYGAEVIMRRGELADDTSRSIE 79 (217)
T ss_dssp EEEEEE-SS-TS-TT-CTTSB----BHHHHHHHHHHHHT--SEEEEEESSHHHHHHHHH---EEEE--STCCSTTHHHHH
T ss_pred CEEEECCCCCCCCCC-CCCHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEEECHHHCCCCCCHHH
T ss_conf 989925877888999-7503428869899999999856887717982795999999998499468858788588632999
Q ss_pred HHHHC-C----CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHH-HH------HHHHCC
Q ss_conf 77504-9----789982788768889999999998507987999738923202210006789999-99------987120
Q T0593 79 ALRHF-G----SCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADEL-ER------AILQGI 146 (208)
Q Consensus 79 ~~~~~-~----~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i-~~------~~~~g~ 146 (208)
+..+. . .++.+.+|+||++++.++++++.+.+.+.+...............+....+..+ +. ......
T Consensus 80 ~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (217)
T PF02348_consen 80 AVKHALADDEDIVVRLQGDSPLLDPESIDRAIEDIREADADYISNLVDPVGSSVEVFNPNPLKVVYRDDGDALYFREHVI 159 (217)
T ss_dssp HHHHCCCCTTSEEEEE-TTETT--HHHHHHHHHHHHHHTTTCEEEEEEEEESHHHHTSTTSTEEEECTTSBEEEEESSES
T ss_pred HHHHHHHHHHHEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHCCCCCCEEEEECCCCCHHHHCCCCC
T ss_conf 99996441242288638804888799999999999818842100350351226661577521898664663444115777
Q ss_pred HHHHHHHHHCCEEEECCCCEEEECCC-HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 57899997526123214501442286-442036989899999999999
Q T0593 147 RKILVPLERLNVVYYPVEKLRKFDKE-LISFFNINTPDDLKRAEEICS 193 (208)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~IdtpeDl~~a~~il~ 193 (208)
+..................++.+... ...-+++||++||+.++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~~~~D~~~d~e~~e~l~~ 207 (217)
T PF02348_consen 160 PYIRRNPEEFYDFYIKNVGIYAFRKESPLERYTIDTPEDFELAEKLEQ 207 (217)
T ss_dssp SECHHHHHC-STTEEEEECEEEEECHHCHHHHHHSHHHHHHHHHTHTT
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 434677433367306631013574650542321799256999999971
No 4
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 The function of the prokaryotic proteins in this family is unknown.; PDB: 2i5e_B.
Probab=98.26 E-value=4.7e-07 Score=57.13 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=82.8
Q ss_pred CEEEEECCCCC---CCCCC---C---CCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHH--HHCCCEEECCCCC
Q ss_conf 91788648875---35666---9---760266784379899999972687207872521334443--1010000023441
Q T0593 1 MKVAVLVGGVG---RRIGM---E---KTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSS--RYEAEFIWDLHKG 69 (208)
Q Consensus 1 m~~vIlAaG~g---tRlg~---p---K~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~--~~~~~~~~~~~~~ 69 (208)
|.+||.--..+ |||.. | ..|. +-|+..++.+++.+. ++++..++...... .....+..+. .
T Consensus 1 m~~viPvk~~~~aKsRLa~~L~~~eR~~l~----~aml~dvl~a~~~v~--v~vVs~d~~v~~~a~~~~g~~vi~d~--~ 72 (217)
T PF01983_consen 1 MRAVIPVKPLSRAKSRLAPVLSPEEREALA----LAMLRDVLDALRAVD--VVVVSPDEEVAALAKAYLGARVIPDE--G 72 (217)
T ss_dssp -EEEEE--------GGGTTTS-HHHHHHHH----HHHHHHHHHHH------EEEEES--S----TT---SSEEEE-----
T ss_pred CEEEEECCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHCC--EEEECCHHHHHHHHHCCCCCEEEECC--C
T ss_conf 959997168874310147425989999999----999999999976288--79974618876654313795797469--7
Q ss_pred HHHHHHHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCC-HHHHHHHHHHHHHCC
Q ss_conf 23677888877--504978998278876888999999999850798799973892320221000-678999999987120
Q T0593 70 VGSIAGIHAAL--RHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYA-ESAADELERAILQGI 146 (208)
Q Consensus 70 ~~~~~~~~~~~--~~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~g~ 146 (208)
.+.-.++..++ ...+.++++++|.|+++++.++.++++..+. ..++.|..++..+. ++. +..+.. . -|.
T Consensus 73 ~gLN~Al~~a~~~~~~~~v~vl~aDLPll~~~dl~~ll~~~~~~-~vvIaP~rggGTNa--L~~~~~~~~~---~--fg~ 144 (217)
T PF01983_consen 73 EGLNAALNAALAAIGEDPVLVLPADLPLLTPEDLRRLLAAAGEF-DVVIAPSRGGGTNA--LFLRPSAFRF---R--FGG 144 (217)
T ss_dssp S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS---SEEEE--------E--EEESCCC------------
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC-CEEEECCCCCCEEE--EEECCCCCCC---C--CCC
T ss_conf 56799999997436888469951577657989999999725888-98994789998558--9954766875---7--382
Q ss_pred HHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHH
Q ss_conf 578999975261232145014422864420369898999999
Q T0593 147 RKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRA 188 (208)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a 188 (208)
.+.....+...-..+ .+..++ .....+||||||||..+
T Consensus 145 ~S~~~H~~~A~~~gl---~~~v~~-s~~l~~DIDtpeDL~el 182 (217)
T PF01983_consen 145 DSFRRHLRAAEERGL---SVEVID-SFRLALDIDTPEDLAEL 182 (217)
T ss_dssp -HHHHHHHHHHH-------EEE----S-------SCCHHHHH
T ss_pred CHHHHHHHHHHHCCC---CEEEEC-CCCEEECCCCHHHHHHH
T ss_conf 149999999986798---479964-76532168998999999
No 5
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPP_i . UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type . In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle . Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 1z90_A 2icy_B 2icx_A 2q4j_A 1vm8_A 1jvd_B 1jvg_B 1jv3_B 1jv1_B 2yqc_A ....
Probab=97.73 E-value=7.2e-06 Score=50.33 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=33.9
Q ss_pred EEEECCCCCCCCC--CCCCCEEE-CCEEHHHHHHHHHHH----C--CCCEEEEEC
Q ss_conf 7886488753566--69760266-784379899999972----6--872078725
Q T0593 3 VAVLVGGVGRRIG--MEKTEVML-CGKKLIEWVLEKYSP----F--QTVFVCRDE 48 (208)
Q Consensus 3 ~vIlAaG~gtRlg--~pK~ll~i-~Gkpli~~~i~~l~~----~--~~~~~iv~~ 48 (208)
+|+||||+||||| .||-+++| .|+++++..+++... . ....++.++
T Consensus 59 vl~LaGGlGTrlG~~~pK~~~~v~~~~tfldl~~~qi~~l~~~~~~~iPl~iMtS 113 (420)
T PF01704_consen 59 VLKLAGGLGTRLGCDGPKGLIPVRDGKTFLDLIVRQIEALNKKYGVDIPLYIMTS 113 (420)
T ss_dssp EEEEE----------S-GGGSBSHHHHBHHHHHHHHHHHHHHHCTTT-EEEEEE-
T ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 9996788635457888715566168872899999999987455688546999788
No 6
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); PDB: 3cgx_A.
Probab=91.17 E-value=0.25 Score=24.26 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHCCC-CEEEEECC-HHHHHHHHH--CCCEEEC-CCCCHHHHHHHHHH----HHH-CCCEEEEECCCCCCCHHHHH
Q ss_conf 999972687-20787252-133444310--1000002-34412367788887----750-49789982788768889999
Q T0593 33 LEKYSPFQT-VFVCRDEK-QAEKLSSRY--EAEFIWD-LHKGVGSIAGIHAA----LRH-FGSCVVAAIDMPFVKPEVLE 102 (208)
Q Consensus 33 i~~l~~~~~-~~~iv~~~-~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~----~~~-~~~~lv~~~D~p~~~~~~i~ 102 (208)
++.+++... ..++...+ ......... ....... ..++..-...+..+ +.. ++.++++-.|+|-++++.++
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Q~ggdLG~Rm~~a~~~~~~~g~~~vvlIGsD~P~L~~~~l~ 81 (122)
T PF09837_consen 2 LAVVQALQAADVVLAYTPDGAAEAFDAWAAPGGVTVYRPQGGGDLGERMARAFQDAFERGYEPVVLIGSDCPDLTPEHLQ 81 (122)
T ss_dssp ----TTSSS-EEEEEE--TTHHHHHHHH------SEEEE--------HHHHHHHHHHH----EEEEE----TT--HHHHH
T ss_pred CHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf 46664177788899985896466776530478975882689989899999999999964898499981887888999999
Q ss_pred HHHHHHHCCCCEEEEECCCCEECCHHH
Q ss_conf 999998507987999738923202210
Q T0593 103 HLYKEGEKAGCDALIPKHDYPEPLLAY 129 (208)
Q Consensus 103 ~l~~~~~~~~~~~~v~~~~~~~~~~~~ 129 (208)
+..+++..+ ..|.-|..++.....++
T Consensus 82 ~A~~~L~~~-d~VlGPa~DGGyyLiG~ 107 (122)
T PF09837_consen 82 QAFEALERH-DVVLGPAEDGGYYLIGL 107 (122)
T ss_dssp HHHHHTTT--SEEE-EE-------E-E
T ss_pred HHHHHHCCC-CEEEEECCCCCEEEEEE
T ss_conf 999976239-98996847899999954
No 7
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. ; PDB: 3e26_A 3e25_A 3ckv_A 3cko_A 3ckj_A 3ckq_A 3ckn_A 2ffv_A 2ffu_A 2d7i_A ....
Probab=42.90 E-value=7.6 Score=15.77 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=52.9
Q ss_pred CEEECC-EEHHHHHHHHHHHC---CCCEEEEECCH---HHHHHHHH---CCCEEECCCCC-HHHHHHHHHHHHHCC--CE
Q ss_conf 026678-43798999999726---87207872521---33444310---10000023441-236778888775049--78
Q T0593 20 EVMLCG-KKLIEWVLEKYSPF---QTVFVCRDEKQ---AEKLSSRY---EAEFIWDLHKG-VGSIAGIHAALRHFG--SC 86 (208)
Q Consensus 20 ll~i~G-kpli~~~i~~l~~~---~~~~~iv~~~~---~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~ 86 (208)
.+|..+ ...|..+++.+.+. ...++++..+. ........ ...+.....+. .+...+...++..+. .+
T Consensus 3 iip~yn~~~~l~~~l~sl~~q~~~~~eiiivdd~s~d~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 IIPTYNEEEFLEETLESLLKQTYPNFEIIIVDDGSTDETVEILEEFQKSDPNIRVIRNPENLGKARARNRGIKLAKGDYI 82 (169)
T ss_dssp EEEESS-TCCHHHHHHHHHCCCGCEEEEEEEE-S-SSSHHHHHHHHHCTSTTEEEEEHCCH-HHHHHHHHHHHS--SSEE
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 99921888999999999984257987999982454311222111112222222222111112222222321111113589
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 998278876888999999999850798799
Q T0593 87 VVAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208)
Q Consensus 87 lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208)
+++..| -.++++.+..+++.+.+.+..++
T Consensus 83 ~~lD~D-~~~~~~~l~~l~~~~~~~~~~~~ 111 (169)
T PF00535_consen 83 LFLDDD-DILEPNWLEELLEFLEKNPADVV 111 (169)
T ss_dssp EEEETT-EEE-TTHHHHHHHHHHHHTTCEE
T ss_pred EEECCC-CCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 981387-54328999999999980899499
No 8
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding . D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) .; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 2fb9_A 2yzg_A 2yzm_A 2zdg_B 2zdh_C 2zdq_B 2yzn_C 1e4e_A 1iow_A 1iov_A ....
Probab=30.24 E-value=5.9 Score=16.37 Aligned_cols=13 Identities=46% Similarity=0.823 Sum_probs=10.8
Q ss_pred CEEEEECCCCCCC
Q ss_conf 9178864887535
Q T0593 1 MKVAVLVGGVGRR 13 (208)
Q Consensus 1 m~~vIlAaG~gtR 13 (208)
|++.||+||.|+-
T Consensus 1 m~i~vl~GG~S~E 13 (117)
T PF01820_consen 1 MRIAVLFGGKSSE 13 (117)
T ss_dssp EEEEEEE----TT
T ss_pred CEEEEEECCCCCC
T ss_conf 9599995767731
No 9
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase .
Probab=27.34 E-value=8.2 Score=15.58 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=14.2
Q ss_pred CCCCCCCCCC----CCCCEEEC
Q ss_conf 4887535666----97602667
Q T0593 7 VGGVGRRIGM----EKTEVMLC 24 (208)
Q Consensus 7 AaG~gtRlg~----pK~ll~i~ 24 (208)
|||.|+|+.. -|.+.++-
T Consensus 1 aGG~S~RlP~~s~~GK~ft~lP 22 (413)
T PF07959_consen 1 AGGQSRRLPNASACGKAFTPLP 22 (413)
T ss_pred CCCCCCCCCCCCCCCCCEECCC
T ss_conf 9975556886443220102465
No 10
>PF11288 DUF3089: Protein of unknown function (DUF3089)
Probab=18.90 E-value=5.9 Score=16.38 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred EEECC-CCCCCCCCCCCCEE-ECCEEHHHHHHHH
Q ss_conf 88648-87535666976026-6784379899999
Q T0593 4 AVLVG-GVGRRIGMEKTEVM-LCGKKLIEWVLEK 35 (208)
Q Consensus 4 vIlAa-G~gtRlg~pK~ll~-i~Gkpli~~~i~~ 35 (208)
+|||| .+|++|.. +.|.. +.|+|+-++.+-+
T Consensus 97 ~ILaGHSQGs~~l~-~LLr~~i~~~pl~~rLVAA 129 (200)
T PF11288_consen 97 FILAGHSQGSMHLL-RLLREEIAGKPLQKRLVAA 129 (200)
T ss_pred EEEEEECHHHHHHH-HHHHHHHCCHHHHHHHHHH
T ss_conf 79997274899999-9999873682789856860
Done!