Query T0593 3NGW, Archaeoglobus fulgidus, 208 residues Match_columns 208 No_of_seqs 108 out of 6539 Neff 10.4 Searched_HMMs 15564 Date Mon Jul 5 09:10:37 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0593.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0593.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1e5ka_ c.68.1.8 (A:) Molybden 100.0 1E-31 6.7E-36 199.4 15.3 180 2-189 5-188 (188) 2 d1w77a1 c.68.1.13 (A:75-300) 4 99.9 1.1E-23 7E-28 153.4 15.6 188 2-194 6-226 (226) 3 d2oi6a2 c.68.1.5 (A:4-251) N-a 99.9 2.5E-24 1.6E-28 157.0 9.9 196 1-199 3-243 (248) 4 d1vpaa_ c.68.1.13 (A:) 4-dipho 99.9 1.3E-23 8.3E-28 152.9 13.1 185 1-196 3-221 (221) 5 d1g97a2 c.68.1.5 (A:2-251) N-a 99.9 2.9E-23 1.9E-27 150.9 10.3 116 2-117 3-126 (250) 6 d1vgwa_ c.68.1.13 (A:) 4-dipho 99.9 9.3E-23 6E-27 148.0 12.1 182 2-193 5-226 (226) 7 d1i52a_ c.68.1.13 (A:) 4-dipho 99.9 1.6E-22 1E-26 146.6 12.8 187 2-194 5-225 (225) 8 d1w55a1 c.68.1.13 (A:3-207) Is 99.9 7.8E-23 5E-27 148.5 9.4 182 1-189 2-200 (205) 9 d1jyka_ c.68.1.13 (A:) CTP:pho 99.9 2.1E-23 1.3E-27 151.8 5.9 187 1-193 4-229 (229) 10 d2dpwa1 c.68.1.19 (A:1-231) Un 99.9 1.3E-21 8.3E-26 141.4 13.8 110 2-117 4-118 (231) 11 d1lvwa_ c.68.1.6 (A:) RmlA (Rf 99.8 7.3E-20 4.7E-24 131.4 14.5 192 1-197 4-245 (295) 12 d1fxoa_ c.68.1.6 (A:) RmlA (Rf 99.8 4.4E-20 2.8E-24 132.6 12.4 191 1-196 2-242 (292) 13 d1mc3a_ c.68.1.6 (A:) RffH {Es 99.8 2.6E-20 1.6E-24 134.0 10.7 191 1-196 2-242 (291) 14 d1tzfa_ c.68.1.13 (A:) Glucose 99.8 8.4E-20 5.4E-24 131.0 10.9 187 1-197 3-253 (259) 15 d1vica_ c.68.1.13 (A:) CMP:2-k 99.7 6.5E-17 4.2E-21 114.4 14.3 112 2-114 3-121 (255) 16 d1h7ea_ c.68.1.13 (A:) CMP:2-k 99.7 4.9E-16 3.1E-20 109.4 14.7 112 2-114 4-120 (245) 17 d1qwja_ c.68.1.13 (A:) CMP acy 99.7 1.4E-16 9.1E-21 112.5 11.9 190 1-196 4-224 (228) 18 d1yp2a2 c.68.1.6 (A:10-316) Gl 99.7 3.3E-17 2.1E-21 116.2 8.6 113 1-115 12-157 (307) 19 d1vh1a_ c.68.1.13 (A:) CMP:2-k 99.7 2.9E-16 1.8E-20 110.7 13.4 114 2-116 3-123 (246) 20 d2cu2a2 c.68.1.20 (A:1-268) Pu 99.7 2.5E-15 1.6E-19 105.3 16.1 115 1-116 1-136 (268) 21 d1eyra_ c.68.1.13 (A:) CMP acy 99.7 4.4E-16 2.8E-20 109.7 11.5 112 3-115 7-129 (225) 22 d2i5ea1 c.68.1.21 (A:1-208) Hy 98.4 1.2E-06 8E-11 55.4 8.5 172 1-188 1-178 (208) 23 d2icya2 c.68.1.5 (A:6-383) UDP 98.3 6E-07 3.9E-11 57.2 5.9 48 2-49 76-132 (378) 24 d1jv1a_ c.68.1.5 (A:) UDP-N-ac 97.8 1.1E-05 7E-10 50.0 4.9 37 2-38 104-145 (501) 25 d1omza_ c.68.1.15 (A:) Alpha-1 58.4 5.6 0.00036 17.2 6.5 93 23-116 12-114 (265) 26 d1j2jb_ a.7.8.1 (B:) ADP-ribos 36.0 13 0.00081 15.2 2.5 23 176-198 14-36 (41) 27 d1j2jb_ a.7.8.1 (B:) ADP-ribos 35.0 13 0.00086 15.0 2.5 23 176-198 14-36 (41) 28 d1xjca_ c.37.1.10 (A:) Molybdo 29.0 17 0.0011 14.4 4.1 39 1-51 1-40 (165) 29 d1jkxa_ c.65.1.1 (A:) Glycinam 22.2 19 0.0012 14.1 1.5 88 1-103 1-99 (209) 30 d1xhba2 c.68.1.17 (A:95-422) P 20.3 25 0.0016 13.5 8.7 97 21-118 28-142 (328) No 1 >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Probab=99.98 E-value=1e-31 Score=199.41 Aligned_cols=180 Identities=22% Similarity=0.299 Sum_probs=138.1 Q ss_pred EEEEECCCCCCCCCC-CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECC-CCCHHHHHHHHHH Q ss_conf 178864887535666-97602667843798999999726872078725213344431010000023-4412367788887 Q T0593 2 KVAVLVGGVGRRIGM-EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDL-HKGVGSIAGIHAA 79 (208) Q Consensus 2 ~~vIlAaG~gtRlg~-pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (208) .+||||||+|||||+ ||+|++++|+|||+|+++++++....++++...+.+.. ......+..+. ....++..++.++ T Consensus 5 ~~iILAgG~ssRmG~~~K~ll~~~g~~ll~~~l~~l~~~~~~ivv~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~g~~~~ 83 (188) T d1e5ka_ 5 TGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIY-QASGLKVIEDSLADYPGPLAGMLSV 83 (188) T ss_dssp EEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHHHCSCEEEECSSSHHHH-HTTSCCEECCCTTCCCSHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCEECCEEHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 489986777757999892667789983228898651144321234467227766-4127876652324354304788988 Q ss_pred HHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCC Q ss_conf 7504--97899827887688899999999985079879997389232022100067899999998712057899997526 Q T0593 80 LRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPLERLN 157 (208) Q Consensus 80 ~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 157 (208) .... +.++++++|+|+++++++++|++...++ ..+++..+++..+.+++|++.+.+.+...+++|.+++..++.... T Consensus 84 ~~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 162 (188) T d1e5ka_ 84 MQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDA-PVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMVFMRLAG 162 (188) T ss_dssp HHHCCSSEEEEEETTCTTCCTTHHHHHHHTCTTC-SEEEEECSSCEEEEEEEEETTHHHHHHHHHHTTCCCHHHHHHHTT T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCC T ss_conf 8750465379832677778999999999841214-404454337647643532289999999999749930999998879 Q ss_pred EEEECCCCEEEECCCHHHCCCCCCHHHHHHHH Q ss_conf 12321450144228644203698989999999 Q T0593 158 VVYYPVEKLRKFDKELISFFNINTPDDLKRAE 189 (208) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~ 189 (208) ...+. +.+....|+||||||||+++| T Consensus 163 ~~~v~------~~~~~~~~~ninTpeDl~r~~ 188 (188) T d1e5ka_ 163 GHAVD------FSDHKDAFVNVNTPEELARWQ 188 (188) T ss_dssp CEEEE------CTTSTTTTCCCCSHHHHHTTC T ss_pred CEEEE------CCCCCCCCCCCCCHHHHHHHC T ss_conf 75996------469977003899799999449 No 2 >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Probab=99.91 E-value=1.1e-23 Score=153.37 Aligned_cols=188 Identities=19% Similarity=0.210 Sum_probs=109.1 Q ss_pred EEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCC-CEEEEECCH-HHHHHHHHCCC---EEECCCCCHHHHH Q ss_conf 178864887535666--9760266784379899999972687-207872521-33444310100---0002344123677 Q T0593 2 KVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQT-VFVCRDEKQ-AEKLSSRYEAE---FIWDLHKGVGSIA 74 (208) Q Consensus 2 ~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~ 74 (208) .+||||||+|||||+ ||+|++++|||||+|+++.+..... ..++++.+. ........... ......++..... T Consensus 6 ~~IIlAaG~GtRm~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~gg~~r~~ 85 (226) T d1w77a1 6 SVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGKERQD 85 (226) T ss_dssp EEEEECCC-------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEECCCSSHHH T ss_pred EEEEECCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 99995881573286799940527897369999999998615443134115244423332022222222222332113355 Q ss_pred HHHHHHHH----CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCCCEE--------------------CCHHH Q ss_conf 88887750----497899827887688899999999985079879997-389232--------------------02210 Q T0593 75 GIHAALRH----FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP-KHDYPE--------------------PLLAY 129 (208) Q Consensus 75 ~~~~~~~~----~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~-~~~~~~--------------------~~~~~ 129 (208) ++..++.. .+.++++.+|.||++++.+..+++.....+..+++. ..+... -.+.. T Consensus 86 sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~p~~ 165 (226) T d1w77a1 86 SVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQV 165 (226) T ss_dssp HHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBC------CCEEEEEEEE T ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEECCCCHHHHHHHHHHH T ss_conf 55666765302553202213323036687754345544324751103566551689726873020454202467777776 Q ss_pred CCHHHH-HHHHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 006789-99999987120578999975261232145014422864420369898999999999997 Q T0593 130 YAESAA-DELERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSK 194 (208) Q Consensus 130 ~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~ 194 (208) +....+ ..+..... ....+ ++...........+..+..+... ++|||||||++||++|++ T Consensus 166 f~~~~l~~~~~~~~~-~~~~~---TD~~~l~~~~g~~v~~v~g~~~n-~KItt~eDl~~ae~lL~~ 226 (226) T d1w77a1 166 IKPELLKKGFELVKS-EGLEV---TDDVSIVEYLKHPVYVSQGSYTN-IKVTTPDDLLLAERILSE 226 (226) T ss_dssp ECHHHHHHHHHHHHH-SCCCC---CC-CCTTGGGSSCCEEEECCTTC-CCCCSHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHH-CCCCC---CCHHHHHHHCCCCEEEEECCHHH-CCCCCHHHHHHHHHHHCC T ss_conf 755899999999874-29986---75999999779964999779553-685999999999999675 No 3 >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.91 E-value=2.5e-24 Score=157.04 Aligned_cols=196 Identities=16% Similarity=0.128 Sum_probs=114.8 Q ss_pred CEEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC---EEECCCCCHHHHHH Q ss_conf 917886488753566--6976026678437989999997268720787252133444310100---00023441236778 Q T0593 1 MKVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE---FIWDLHKGVGSIAG 75 (208) Q Consensus 1 m~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (208) |++||||||+||||+ .||||++|+|||||+|+++.+...+...++++.++........... .........+...+ T Consensus 3 MkvIILAAG~GtRm~~~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (248) T d2oi6a2 3 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHA 82 (248) T ss_dssp EEEEEECCSCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCTTEEEEECSSCCCHHHH T ss_pred CEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHH T ss_conf 43999778888779989892207999812999999999976996798505766442332024654332225567540789 Q ss_pred HHHHHHH---CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE-EECC------------CCEE--------------- Q ss_conf 8887750---4978998278876888999999999850798799-9738------------9232--------------- Q T0593 76 IHAALRH---FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPKH------------DYPE--------------- 124 (208) Q Consensus 76 ~~~~~~~---~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~-v~~~------------~~~~--------------- 124 (208) +..+... ....++..+|.++.....+..+..........+. +... +... T Consensus 83 ~~~~~~~i~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (248) T d2oi6a2 83 MQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQI 162 (248) T ss_dssp HHHHGGGSCTTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEETTEEEEEECGGGCCTTGGGC T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHH T ss_conf 98411341356532541474222330147889998631220036777117755643201257621355215788465435 Q ss_pred --CCHH--HCCHH-HHHHHHHHH---HHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHC-CCCCCHHHHHHHHHHHHHH Q ss_conf --0221--00067-899999998---7120578999975261232145014422864420-3698989999999999971 Q T0593 125 --PLLA--YYAES-AADELERAI---LQGIRKILVPLERLNVVYYPVEKLRKFDKELISF-FNINTPDDLKRAEEICSKM 195 (208) Q Consensus 125 --~~~~--~~~~~-~~~~i~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IdtpeDl~~a~~il~~~ 195 (208) ...+ .+... +...+.... ..+++.+.+.+..+- -....+..+.....++ ++|||||||++||++++++ T Consensus 163 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~---~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~ 239 (248) T d2oi6a2 163 QEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAY---QEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE 239 (248) T ss_dssp CEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHH---HTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 65430110133678899998761323101345658999999---879959999848789937999999999999999999 Q ss_pred CCCC Q ss_conf 5577 Q T0593 196 STEG 199 (208) Q Consensus 196 ~~~~ 199 (208) ..+. T Consensus 240 ~~~~ 243 (248) T d2oi6a2 240 QAEK 243 (248) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 4 >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Probab=99.90 E-value=1.3e-23 Score=152.92 Aligned_cols=185 Identities=17% Similarity=0.229 Sum_probs=105.2 Q ss_pred CEE-EEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCC-CCEEEEECCH-HHHHHHHHC--CCEEECCCCCHHHH Q ss_conf 917-8864887535666--976026678437989999997268-7207872521-334443101--00000234412367 Q T0593 1 MKV-AVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQ-TVFVCRDEKQ-AEKLSSRYE--AEFIWDLHKGVGSI 73 (208) Q Consensus 1 m~~-vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~-~~~~iv~~~~-~~~~~~~~~--~~~~~~~~~~~~~~ 73 (208) |++ ||||||+|||||+ ||+|++++|||||+|+++++.... ...++++... ......... .........+.... T Consensus 3 M~iAIILAaG~gtRm~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221) T d1vpaa_ 3 MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRS 82 (221) T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEEECCSSHH T ss_pred CEEEEECCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 70999825767623897998426379998799999999986236563148863204567776402333431223433211 Q ss_pred HHHHHHH----H-HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCCCEE--------C----------CHHH Q ss_conf 7888877----5-0497899827887688899999999985079879997-389232--------0----------2210 Q T0593 74 AGIHAAL----R-HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP-KHDYPE--------P----------LLAY 129 (208) Q Consensus 74 ~~~~~~~----~-~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~-~~~~~~--------~----------~~~~ 129 (208) .+...++ . ..+.++++.+|+||++++.+.++++...+....+.+. ..+... . .+.. T Consensus 83 ~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (221) T d1vpaa_ 83 QSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDRIEYIPRKGVYRILTPQA 162 (221) T ss_dssp HHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTEEEEECCTTEEEEEEEEE T ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEECCHHHHHHHHHHHH T ss_conf 01789999998438981798414335551878876665420111113566554315740576310026677788665423 Q ss_pred CCHHHHHHHHHHHHHCCHHHH---HHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHC Q ss_conf 006789999999871205789---9997526123214501442286442036989899999999999715 Q T0593 130 YAESAADELERAILQGIRKIL---VPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMS 196 (208) Q Consensus 130 ~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~ 196 (208) +.. ..+......+. .+. ..+... ..++..+..+.. .++|||||||+.||.+++++. T Consensus 163 ~~~---~~l~~~~~~~~-~~tD~~~l~~~~------g~~v~~i~g~~~-n~kI~t~eDl~~Ae~llk~~e 221 (221) T d1vpaa_ 163 FSY---EILKKAHENGG-EWADDTEPVQKL------GVKIALVEGDPL-CFKVTFKEDLELARIIAREWE 221 (221) T ss_dssp EEH---HHHHHHHTTCC-CCSSSHHHHHTT------TCCCEEEECCGG-GCCCCSTTHHHHHHHHHHHHC T ss_pred HHH---HHHHHHHHHCC-CCCCHHHHHHHC------CCCEEEEECCHH-HCCCCCHHHHHHHHHHHHCCC T ss_conf 307---88899997278-776089999986------995599966844-238899999999999985409 No 5 >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Probab=99.89 E-value=2.9e-23 Score=150.92 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=82.5 Q ss_pred EEEEECCCCCCCCC--CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC-E-EECCCCCHHHHHHHH Q ss_conf 17886488753566--6976026678437989999997268720787252133444310100-0-002344123677888 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE-F-IWDLHKGVGSIAGIH 77 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 77 (208) -|||||||+||||+ .||||++|+|||||+|+++++...+...++++.++........... . ........+...++. T Consensus 3 ~AIIlAaG~GtRl~~~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 82 (250) T d1g97a2 3 FAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHAVM 82 (250) T ss_dssp EEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTTSEEEECSSCCCHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 89997887887799898912148998119999999999769976999512343101211035443332235554412799 Q ss_pred HHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 8775----049789982788768889999999998507987999 Q T0593 78 AALR----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 78 ~~~~----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) .+.. ..+..+++.+|.|++.++.++++++.+.+....++. T Consensus 83 ~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 126 (250) T d1g97a2 83 MTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATI 126 (250) T ss_dssp TTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEE T ss_pred HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 99986510357506984477745777899999998641123333 No 6 >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Probab=99.89 E-value=9.3e-23 Score=148.01 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=101.6 Q ss_pred EEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCCC-EEEEECCHHH---HHHHHHCCCEEECCCCCHHHHHH Q ss_conf 178864887535666--97602667843798999999726872-0787252133---44431010000023441236778 Q T0593 2 KVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQTV-FVCRDEKQAE---KLSSRYEAEFIWDLHKGVGSIAG 75 (208) Q Consensus 2 ~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~~-~~iv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 75 (208) -|||||||.|||||+ ||+|++++|+|||+|+++++...... .++++..... ................+.....+ T Consensus 5 iAIIlAaG~gtRm~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s 84 (226) T d1vgwa_ 5 IALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAET 84 (226) T ss_dssp EEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECCCCSSHHHH T ss_pred EEEEECCCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCCCCCEEECCCCCCCCCHH T ss_conf 99995798743089599802607998789999999998678755221212615555555202322000002342100015 Q ss_pred HH----HHHH-----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE--ECCCC--------EECC---------- Q ss_conf 88----8775-----049789982788768889999999998507987999--73892--------3202---------- Q T0593 76 IH----AALR-----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI--PKHDY--------PEPL---------- 126 (208) Q Consensus 76 ~~----~~~~-----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v--~~~~~--------~~~~---------- 126 (208) +. .... ..+.++++.+|+||++++.+..+++.+...+.++++ +..+. +... T Consensus 85 ~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~ 164 (226) T d1vgwa_ 85 VRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVDRSGLWQAQ 164 (226) T ss_dssp HHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEESSSBEEEEECCTTEEEEE T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEECCCCEEEECCCHHHHHHHH T ss_conf 66799999874004555423421444345867888777754033200035302234320220388688515647878877 Q ss_pred -HHHCCHHHHHHHHHHH-HHCCHHHH---HHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH Q ss_conf -2100067899999998-71205789---9997526123214501442286442036989899999999999 Q T0593 127 -LAYYAESAADELERAI-LQGIRKIL---VPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICS 193 (208) Q Consensus 127 -~~~~~~~~~~~i~~~~-~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~ 193 (208) +..+.. ..+...+ ..+.+.+. .+... ....+..+..+.. .++|||||||+.||.+|+ T Consensus 165 ~p~~f~~---~~l~~~~~~~~~~~~tD~~~l~~~------~g~~v~~v~g~~~-nikItt~eDl~~ae~ll~ 226 (226) T d1vgwa_ 165 TPQLFQA---GLLHRALAAENLGGITDEASAVEK------LGVRPLLIQGDAR-NLKLTQPQDAYIVRLLLD 226 (226) T ss_dssp EEEEEEH---HHHHHHHHC----CCCSHHHHHHT------TTCCCEEEECCTT-CCCCCSHHHHHHHHHHCC T ss_pred HHHCCCH---HHHHHHHHHHHCCCCCCHHHHHHH------CCCCEEEEECCCC-CCCCCCHHHHHHHHHHHC T ss_conf 6402369---999998877624899928999998------6995599977810-058499999999999759 No 7 >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Probab=99.89 E-value=1.6e-22 Score=146.63 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=104.3 Q ss_pred EEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCC-CEEEEECC-HHHHHHH---HHCCCEEECCCCCHHHHH Q ss_conf 178864887535666--9760266784379899999972687-20787252-1334443---101000002344123677 Q T0593 2 KVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQT-VFVCRDEK-QAEKLSS---RYEAEFIWDLHKGVGSIA 74 (208) Q Consensus 2 ~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (208) .|||||||+||||++ ||+|++++|||||+|+++++.+... ..++++.+ ....... .....+. .......... T Consensus 5 ~AIILAaG~gtRm~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~ 83 (225) T d1i52a_ 5 CAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQIT-VVDGGDERAD 83 (225) T ss_dssp EEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGCTTEE-EEECCSSHHH T ss_pred EEEEECCCCCEECCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCHHH T ss_conf 999968976610887999625079988999999999985765333343346666556664101122210-0247761158 Q ss_pred HHHHHHHH---CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE--EECCCCEE---------------------CCHH Q ss_conf 88887750---4978998278876888999999999850798799--97389232---------------------0221 Q T0593 75 GIHAALRH---FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL--IPKHDYPE---------------------PLLA 128 (208) Q Consensus 75 ~~~~~~~~---~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~--v~~~~~~~---------------------~~~~ 128 (208) ++..+... .+.+++..+|.||++++.+.++++....+....+ ++..+... -... T Consensus 84 sv~~~~~~~~~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (225) T d1i52a_ 84 SVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 163 (225) T ss_dssp HHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEE T ss_pred HHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 88751103676501453036777777999999986421001233334310000000103456544554658888776554 Q ss_pred HCCHH-HHHHHHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 00067-8999999987120578999975261232145014422864420369898999999999997 Q T0593 129 YYAES-AADELERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSK 194 (208) Q Consensus 129 ~~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~ 194 (208) .+... +...+......+ ..+.+..... ......+..+..+.. -++|||||||+.||.++++ T Consensus 164 ~f~~~~l~~~~~~~~~~~-~~~tD~~~l~---~~~g~~v~~v~~~~~-nikItt~eDl~~Ae~~l~r 225 (225) T d1i52a_ 164 FFPRELLHDCLTRALNEG-ATITDEASAL---EYCGFHPQLVEGRAD-NIKVTRPEDLALAEFYLTR 225 (225) T ss_dssp EEEHHHHHHHHHHHHHTT-CCCCSHHHHH---HHTTCCCEEEECCTT-CCCCCSHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHCC-CCCCCHHHHH---HHCCCCEEEEECCCC-CCCCCCHHHHHHHHHHHCC T ss_conf 432578999999998559-9987299999---977995599966800-0584999999999999675 No 8 >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Probab=99.88 E-value=7.8e-23 Score=148.45 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=110.1 Q ss_pred CEEEEECCCCCCCCCC--CCCCEEECCEEHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHH Q ss_conf 9178864887535666--9760266784379899999972687-207872521334443101000002344123677888 Q T0593 1 MKVAVLVGGVGRRIGM--EKTEVMLCGKKLIEWVLEKYSPFQT-VFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208) Q Consensus 1 m~~vIlAaG~gtRlg~--pK~ll~i~Gkpli~~~i~~l~~~~~-~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208) +++||||||+|+|||+ ||+|++++|+|||+|+++++..... ..++++..+... ....... .....++.....++. T Consensus 2 is~IILAaG~g~Rmg~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~~~-~~~~~~~-~~~v~Gg~~r~~Sv~ 79 (205) T d1w55a1 2 MSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITY-MKKFTKN-YEFIEGGDTRAESLK 79 (205) T ss_dssp EEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHH-HHTTCSS-SEEEECCSSHHHHHH T ss_pred EEEEEECCCCCEECCCCCCCEEEEECCEEHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCHHHHHH T ss_conf 58999678137138869980267899998999999998752333312333443221-1121222-221245431014442 Q ss_pred HHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCEECC---------HHHCCHHH--HHHHHHHHH Q ss_conf 8775049--78998278876888999999999850798799-9738923202---------21000678--999999987 Q T0593 78 AALRHFG--SCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPKHDYPEPL---------LAYYAESA--ADELERAIL 143 (208) Q Consensus 78 ~~~~~~~--~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~-v~~~~~~~~~---------~~~~~~~~--~~~i~~~~~ 143 (208) .+++..+ .++++.+|+||++++.++++++...+.++.+. .+..+..... +...+++. ...+...++ T Consensus 80 ~gl~~~~~~~VlIhd~~rP~i~~~~i~~li~~~~~~~~~i~~~~~~dti~~~~~~~~R~~l~~~qTPQ~f~~~~l~~a~~ 159 (205) T d1w55a1 80 KALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKALD 159 (205) T ss_dssp HHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEETTEEECGGGCCEECSCEEEEHHHHHHHTS T ss_pred HHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCHHHHHHHHHHHHH T ss_conf 03565531203651257615759898887765431232223565422000232234431225653220112677999997 Q ss_pred HCCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHH Q ss_conf 1205789999752612321450144228644203698989999999 Q T0593 144 QGIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAE 189 (208) Q Consensus 144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~ 189 (208) ++. .+ ++...........+..+..+.. -+.|+|||||+.|| T Consensus 160 ~~~-~~---tDd~~~~~~~g~~v~~i~g~~~-N~KIT~~eDl~~~e 200 (205) T d1w55a1 160 QNL-EF---TDDSTAIAAMGGKIWFVEGEEN-ARKLTFKEDLKKLD 200 (205) T ss_dssp SCC-CC---SSHHHHHHTTTCCEEEEECCGG-GCCCCSGGGGGGSC T ss_pred CCC-CC---CCHHHHHHHCCCCEEEEECCCC-CCCCCCHHHHHHHC T ss_conf 099-97---8389999986998799965865-37799899998740 No 9 >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Probab=99.88 E-value=2.1e-23 Score=151.77 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=106.7 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHH----HHCCCEEEC-CCCCH Q ss_conf 917886488753566-----69760266784379899999972687207872521334443----101000002-34412 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSS----RYEAEFIWD-LHKGV 70 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~----~~~~~~~~~-~~~~~ 70 (208) |+|||||||+||||+ .||||++|+|+|||+|+++.+...+...++++.++..+... .....+... ..... T Consensus 4 mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~~~~i~i~~~~~~~~~ 83 (229) T d1jyka_ 4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADY 83 (229) T ss_dssp CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTS T ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 24999899775347830059984120799878999999999872876543413544113445422012132222221123 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE-------------EEECCCCE------------EC Q ss_conf 367788887750497899827887688899999999985079879-------------99738923------------20 Q T0593 71 GSIAGIHAALRHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDA-------------LIPKHDYP------------EP 125 (208) Q Consensus 71 ~~~~~~~~~~~~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~-------------~v~~~~~~------------~~ 125 (208) +...++..+....+..+++.+|..+....+.+.+ ...... .....+.+ .. T Consensus 84 Gt~~sl~~a~~~l~~~~ii~~dd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 158 (229) T d1jyka_ 84 NNFYSLYLVKEELANSYVIDADNYLFKNMFRNDL-----TRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILS 158 (229) T ss_dssp CTHHHHHTTGGGCTTEEEEETTEEESSCCCCSCC-----CSEEEEECEESSCSSCCEEEECTTCBEEEEECCCSSEEBCC T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHH-----HCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCEEEE T ss_conf 3333321101221212013235301352045443-----00222124421025653058715883144798314452889 Q ss_pred CHHHCCHHHHHHHHHHHHH----CCHHHHHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHH Q ss_conf 2210006789999999871----2057899997526123214501442286442036989899999999999 Q T0593 126 LLAYYAESAADELERAILQ----GIRKILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICS 193 (208) Q Consensus 126 ~~~~~~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~ 193 (208) ...+++......+...+.. +... ..+++......+....+.+.......|++|||||||++|+++++ T Consensus 159 gi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~K 229 (229) T d1jyka_ 159 GVSFWDAPTAEKIVSFIDKAYVSGEFV-DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILK 229 (229) T ss_dssp SEEEECHHHHHHHHHHHHHHHTTTCCT-TCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC T ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHHHHHC T ss_conf 999983799999999988765145430-26799999999975790599955987782699999999999649 No 10 >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Probab=99.87 E-value=1.3e-21 Score=141.43 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=87.0 Q ss_pred EEEEECCCCCCCC---CC-CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHHHH Q ss_conf 1788648875356---66-9760266784379899999972687207872521334443101000002344123677888 Q T0593 2 KVAVLVGGVGRRI---GM-EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH 77 (208) Q Consensus 2 ~~vIlAaG~gtRl---g~-pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208) +|||||||+|||| |. ||+|++++|||||+|+++++.+.+...++++.++.... ..........+...++. T Consensus 4 ~avIlA~G~~~r~~r~g~~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~~------~~~~~~~~~~~~~~~v~ 77 (231) T d2dpwa1 4 SAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP------APALTLPDRGGLLENLE 77 (231) T ss_dssp EEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSS------CCSEEECCCSSHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCEEEEEEECCCCC------EEEEECCCCHHHHHHHH T ss_conf 499989979877787899791106999961999999999844998088542125420------01210023058899999 Q ss_pred HHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 8775049-789982788768889999999998507987999 Q T0593 78 AALRHFG-SCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208) Q Consensus 78 ~~~~~~~-~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v 117 (208) .++...+ .+++++||+||++++.++.+++.+.+.+..+.+ T Consensus 78 ~al~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 118 (231) T d2dpwa1 78 QALEHVEGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI 118 (231) T ss_dssp HHHHTCCSEEEEEETTCTTCCHHHHHHHHHHCCSCSEEEEE T ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99876048439961787527999999999974406966999 No 11 >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=99.83 E-value=7.3e-20 Score=131.40 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=109.1 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHH-------CCCEE-ECC Q ss_conf 917886488753566-----6976026678437989999997268720787252133-444310-------10000-023 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAE-KLSSRY-------EAEFI-WDL 66 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~-~~~~~~-------~~~~~-~~~ 66 (208) |+|||||||+||||. .||||+||+|||||+|+++++...+...++++.++.. ...... ...+. ... T Consensus 4 MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~i~~v~e 83 (295) T d1lvwa_ 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQ 83 (295) T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEEC T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHHCCCEEEEEEC T ss_conf 68999889774647722279886247699998899999999877997699995735399999985611330987999978 Q ss_pred CCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---ECC-----CCE------------- Q ss_conf 44123677888877504--9789982788768889999999998507987999---738-----923------------- Q T0593 67 HKGVGSIAGIHAALRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---PKH-----DYP------------- 123 (208) Q Consensus 67 ~~~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~~~-----~~~------------- 123 (208) ....+...++..+.... +..+++.+|.++...+.. .++..+.+....+++ +.. |.+ T Consensus 84 ~~~~gta~Al~~a~~~l~~~~~~li~~~d~~~~~~~~-~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~~~v~~~~E 162 (295) T d1lvwa_ 84 EEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFS-EILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEE 162 (295) T ss_dssp SSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHH-HHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEE T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCEECHHHH-HHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEEE T ss_conf 9999989999999997199977999679624250679-999999857998699999757876550899879992899860 Q ss_pred ----------ECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEEECCCC-EEEECCCHHHCCCCCCHHHHHHHHH Q ss_conf ----------2022100067899999998--71205789999752612321450-1442286442036989899999999 Q T0593 124 ----------EPLLAYYAESAADELERAI--LQGIRKILVPLERLNVVYYPVEK-LRKFDKELISFFNINTPDDLKRAEE 190 (208) Q Consensus 124 ----------~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~IdtpeDl~~a~~ 190 (208) .....+|....+..+.... ..+.+.+.+..... +.... ..........|+||+||+||..|.. T Consensus 163 Kp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~ 238 (295) T d1lvwa_ 163 KPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEY----LRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238 (295) T ss_dssp SCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHH----HHTTCEEEEEECTTCEECCCSSHHHHHHHHH T ss_pred CCCCCCCCEEECCEEEECHHHHHHHHHCCCCCCCCEECCCHHHHH----HHHCCCEEEECCCCCEEECCCCHHHHHHHHH T ss_conf 445753114654617988789999986698768874601139999----9858870798279967968997477999889 Q ss_pred HHHHHCC Q ss_conf 9997155 Q T0593 191 ICSKMST 197 (208) Q Consensus 191 il~~~~~ 197 (208) .++.+.. T Consensus 239 ~i~~~ek 245 (295) T d1lvwa_ 239 FIETIQK 245 (295) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999997 No 12 >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Probab=99.83 E-value=4.4e-20 Score=132.64 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=116.0 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEE-CCHHHHHHH-------HHCCCEEE-CC Q ss_conf 917886488753566-----69760266784379899999972687207872-521334443-------10100000-23 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRD-EKQAEKLSS-------RYEAEFIW-DL 66 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~-~~~~~~~~~-------~~~~~~~~-~~ 66 (208) |||||||||+||||. .||||+||+|||||+|+++.+...+...++++ ..+...... .....+.. .. T Consensus 2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~q 81 (292) T d1fxoa_ 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQ 81 (292) T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCC T ss_conf 57999799777767700168984568799982499999999987997899995767799999996515526848998238 Q ss_pred CCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---E-------------CCCCE----- Q ss_conf 44123677888877504--9789982788768889999999998507987999---7-------------38923----- Q T0593 67 HKGVGSIAGIHAALRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---P-------------KHDYP----- 123 (208) Q Consensus 67 ~~~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~-------------~~~~~----- 123 (208) ....|...++..+.+.. +..+++.+|..+...+ +..+++.+.++...+++ + ..+++ T Consensus 82 ~~~~Gta~ai~~a~~~i~~~~~~lil~dD~~~~~d-l~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~~ki~~~~E 160 (292) T d1fxoa_ 82 PSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHD-FHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEE 160 (292) T ss_dssp SSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTT-HHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEE T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-HHHHHHHHHHCCCCCEEEEEECCCHHHCEEEEECCCCCEEEEEE T ss_conf 99774789998644423887638997564224869-89999999837999289999899979982899868998867787 Q ss_pred ----------ECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEEECCCCEEEECCC-HHHCCCCCCHHHHHHHHH Q ss_conf ----------2022100067899999998--712057899997526123214501442286-442036989899999999 Q T0593 124 ----------EPLLAYYAESAADELERAI--LQGIRKILVPLERLNVVYYPVEKLRKFDKE-LISFFNINTPDDLKRAEE 190 (208) Q Consensus 124 ----------~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~IdtpeDl~~a~~ 190 (208) .....++...+++.+.... ..|+..+.++.... +....+.+.... ...|+|++|++||..|.. T Consensus 161 KP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~----l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~ 236 (292) T d1fxoa_ 161 KPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAY----LERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 236 (292) T ss_dssp SCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHH----HHTTCEEEEECCTTSEEEECCSHHHHHHHHH T ss_pred CCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHH----HHCCCEEEEEECCCCEEEECCCHHHHHHHHH T ss_conf 899998883788999978289999974899887860068889999----9719847998179977884898899999999 Q ss_pred HHHHHC Q ss_conf 999715 Q T0593 191 ICSKMS 196 (208) Q Consensus 191 il~~~~ 196 (208) ++.... T Consensus 237 ~v~~~e 242 (292) T d1fxoa_ 237 FIATLE 242 (292) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 13 >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Probab=99.83 E-value=2.6e-20 Score=134.00 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=111.7 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCH-HHHHHHH-------HCCCEEE-CC Q ss_conf 917886488753566-----69760266784379899999972687207872521-3344431-------0100000-23 Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQ-AEKLSSR-------YEAEFIW-DL 66 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~-~~~~~~~-------~~~~~~~-~~ 66 (208) |+|||||||.||||. .||||+||+|||||+|+++.+...+...++++.++ ....... ....+.. .. T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y~~Q 81 (291) T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ 81 (291) T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC T ss_pred CCEEEECCCCCCCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHCCEEEEEEC T ss_conf 62999789673556532369985255799996699999999986998899993746299999995831760917999878 Q ss_pred CCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE---ECCC-------------C------ Q ss_conf 44123677888877504--9789982788768889999999998507987999---7389-------------2------ Q T0593 67 HKGVGSIAGIHAALRHF--GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI---PKHD-------------Y------ 122 (208) Q Consensus 67 ~~~~~~~~~~~~~~~~~--~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v---~~~~-------------~------ 122 (208) ....|...++..+.+.. +..+++.+|..|...+ +..+++.+.+...++++ ...+ . T Consensus 82 ~~plGta~Ai~~a~~fi~~~~~~lvlgddi~~~~~-~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~g~i~~i~E 160 (291) T d1mc3a_ 82 PSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQG-FSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEE 160 (291) T ss_dssp SSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSS-CHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCB T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCEEEEEE T ss_conf 99996599999989980899769998997334867-79999999837488299999879860588704216752668897 Q ss_pred ---------EECCHHHCCHHHHHHHHHHH--HHCCHHHHHHHHHCCEEEECCCCEEEEC-CCHHHCCCCCCHHHHHHHHH Q ss_conf ---------32022100067899999998--7120578999975261232145014422-86442036989899999999 Q T0593 123 ---------PEPLLAYYAESAADELERAI--LQGIRKILVPLERLNVVYYPVEKLRKFD-KELISFFNINTPDDLKRAEE 190 (208) Q Consensus 123 ---------~~~~~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~IdtpeDl~~a~~ 190 (208) ......++.+..+..+.... ..|+..+.++.... +......... .....|+|++|+++|..|.. T Consensus 161 KP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~----l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~ 236 (291) T d1mc3a_ 161 KPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMY----LEAGNLTVELLGRGFAWLDTGTHDSLIEAST 236 (291) T ss_dssp SCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHH----HHTTCEEEEECCTTCEEEECCSHHHHHHHHH T ss_pred CCCCCCCCEEEEEEEEECHHHHHHHHCCCCCCCCCEEEHHHHHHH----HHCCCCEEEEECCCCEEEECCCHHHHHHHHH T ss_conf 888988785887899968289999854999889942553799999----9839935999169988982899899999999 Q ss_pred HHHHHC Q ss_conf 999715 Q T0593 191 ICSKMS 196 (208) Q Consensus 191 il~~~~ 196 (208) +.+... T Consensus 237 ~v~~~~ 242 (291) T d1mc3a_ 237 FVQTVE 242 (291) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 14 >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Probab=99.81 E-value=8.4e-20 Score=131.03 Aligned_cols=187 Identities=15% Similarity=0.068 Sum_probs=98.7 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC-------------- Q ss_conf 917886488753566-----6976026678437989999997268720787252133444310100-------------- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAE-------------- 61 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~-------------- 61 (208) +||||||||+||||+ .||||+||+|+|||+|+++.++..+...++++.++.......+... T Consensus 3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~ 82 (259) T d1tzfa_ 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE 82 (259) T ss_dssp CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCHHCCCCCCCHHCC T ss_conf 50999888764467834479981014999999999999999983997453120021789999983111001100100002 Q ss_pred --------------EEECCC-CCHHHHHHHHHHHHH---CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-ECC-- Q ss_conf --------------000234-412367788887750---49789982788768889999999998507987999-738-- Q T0593 62 --------------FIWDLH-KGVGSIAGIHAALRH---FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALI-PKH-- 120 (208) Q Consensus 62 --------------~~~~~~-~~~~~~~~~~~~~~~---~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v-~~~-- 120 (208) ...... ...+...+....... .+.++++.+|..+ ..+ ...+++.+.......+. ... T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (259) T d1tzfa_ 83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVA-DLD-IKATIDFHKAHGKKATLTATFPP 160 (259) T ss_dssp TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEE-CCC-HHHHHHHHHHHCCSEEEEEECCC T ss_pred CCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCC-CCC-HHHHHHHHCCCCCCEEECCCCCC T ss_conf 3201110134454036995264212232444244403699736886253123-642-56654321034420021022356 Q ss_pred ----------CCEE--------------CCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCEEEECCCCEEEECCCHHHC Q ss_conf ----------9232--------------0221000678999999987120578999975261232145014422864420 Q T0593 121 ----------DYPE--------------PLLAYYAESAADELERAILQGIRKILVPLERLNVVYYPVEKLRKFDKELISF 176 (208) Q Consensus 121 ----------~~~~--------------~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (208) ..+. ....++.+.....+.. .........+..+ ....++..+... ..| T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~y~~~~~~~~~i~~---~~~~~~~~~l~~l----~~~~~v~~~~~~-g~W 232 (259) T d1tzfa_ 161 GRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDN---DATTWEQEPLMTL----AQQGELMAFEHP-GFW 232 (259) T ss_dssp CCSEEEEEETTEEEEEEESCSCCSCCEECCCEEECGGGGGGCCS---TTCCTTTHHHHHH----HHTTCEEEEEEC-SCE T ss_pred CCCCCEECCCCEEEEEEECCCCCEEEECCEECCCCCHHHHHCCC---CCCCCHHHHHHHH----HHCCCEEEEEEC-CEE T ss_conf 65782001230477642035654023123112446313444266---7674077899999----856986999939-979 Q ss_pred CCCCCHHHHHHHHHHHHHHCC Q ss_conf 369898999999999997155 Q T0593 177 FNINTPDDLKRAEEICSKMST 197 (208) Q Consensus 177 ~~IdtpeDl~~a~~il~~~~~ 197 (208) .+||||+||+.+++++++-+. T Consensus 233 ~didt~~d~~~~~~~~~~~~~ 253 (259) T d1tzfa_ 233 QPMDTLRDKVYLEGLWEKGKA 253 (259) T ss_dssp EECCSHHHHHHHHHHHHTTCC T ss_pred EECCCHHHHHHHHHHHHCCCC T ss_conf 979888999999999972999 No 15 >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Probab=99.73 E-value=6.5e-17 Score=114.43 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=75.1 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHH--HHCCCEEECCCCCHHHHHHHHHH Q ss_conf 1788648875356669760266784379899999972687207872521334443--10100000234412367788887 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSS--RYEAEFIWDLHKGVGSIAGIHAA 79 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (208) .+||+|.|.|+|+.. |+|.+++|+|||+|+++++.......++|+++..+.... ......................+ T Consensus 3 ~~iIpAR~gSkRlp~-Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (255) T d1vica_ 3 TVIIPARFASSRLPG-KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEV 81 (255) T ss_dssp EEEEECCCCCSSSTT-GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHHH T ss_pred EEEEECCCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHH T ss_conf 999953878878997-1115648938999999999977989299980885110135541433110110047751266899 Q ss_pred HH-----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 75-----049789982788768889999999998507987 Q T0593 80 LR-----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCD 114 (208) Q Consensus 80 ~~-----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~ 114 (208) .. ..+.++.+.+|+|++++.+++.+++.+...... T Consensus 82 ~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~ 121 (255) T d1vica_ 82 VEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVN 121 (255) T ss_dssp HHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCS T ss_pred HHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 9985035785599983612331221212345430343334 No 16 >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Probab=99.70 E-value=4.9e-16 Score=109.41 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=76.4 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEEC-CHHHH--HHHHHCCCEEECCCCCHHHHHHHHH Q ss_conf 17886488753566697602667843798999999726872078725-21334--4431010000023441236778888 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDE-KQAEK--LSSRYEAEFIWDLHKGVGSIAGIHA 78 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208) -+||+|.|.|+|+.. |+|++++|+|||+|+++++.+......|++. +.... ........+................ T Consensus 4 i~iIpAR~~SkRl~~-Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (245) T d1h7ea_ 4 VIVIPARYGSSRLPG-KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVE 82 (245) T ss_dssp EEEEECCSCCSSSTT-GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHHH T ss_pred EEEECCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCEEEEECCCCCCCCHHHHH T ss_conf 999847978857998-4300229950999999999857898869996142320135540596499953834565089999 Q ss_pred HHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCE Q ss_conf 7750--49789982788768889999999998507987 Q T0593 79 ALRH--FGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCD 114 (208) Q Consensus 79 ~~~~--~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~ 114 (208) +... .|.++.+.+|.|+++.+.++.+++........ T Consensus 83 ~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~ 120 (245) T d1h7ea_ 83 VMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL 120 (245) T ss_dssp HHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTC T ss_pred HHHHCCCCEEEEECCHHHHCCCCCCHHHHHCCCCCCCC T ss_conf 99865999899914503211112111443201343332 No 17 >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.70 E-value=1.4e-16 Score=112.50 Aligned_cols=190 Identities=16% Similarity=0.128 Sum_probs=106.6 Q ss_pred CEEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCH-H--HHHHHHHCCCEEECC----CCCHHHH Q ss_conf 91788648875356669760266784379899999972687207872521-3--344431010000023----4412367 Q T0593 1 MKVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQ-A--EKLSSRYEAEFIWDL----HKGVGSI 73 (208) Q Consensus 1 m~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~-~--~~~~~~~~~~~~~~~----~~~~~~~ 73 (208) +.|||+|+|.|||+.. |++.+++|+|||+|+++++.+......|++..+ . ......+........ ....... T Consensus 4 i~aiIpaR~~S~Rlp~-K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (228) T d1qwja_ 4 LAALVLARGGSKGIPL-KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSL 82 (228) T ss_dssp EEEEEECCSCCSSSSC-TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCHH T ss_pred EEEEECCCCCCCCCCC-CCHHHHCCEEHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH T ss_conf 9999445877878998-132464891689999999996699665897222033444665358643223232245640334 Q ss_pred HHHHHHHH---HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCH-------------HHC------C Q ss_conf 78888775---0497899827887688899999999985079879997389232022-------------100------0 Q T0593 74 AGIHAALR---HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLL-------------AYY------A 131 (208) Q Consensus 74 ~~~~~~~~---~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~-------------~~~------~ 131 (208) ..+...+. ..+.++.+.+|+||+.++.++.+++.+...+.+.++.........+ ... . T Consensus 83 ~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228) T d1qwja_ 83 DAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPR 162 (228) T ss_dssp HHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBSSSBTTBCCC T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCC T ss_conf 33101133342211145420133446711212356664036866343322222333002222103455510233331133 Q ss_pred HHHHHHHHHHHHHCCHHH--HHHHHHCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHC Q ss_conf 678999999987120578--99997526123214501442286442036989899999999999715 Q T0593 132 ESAADELERAILQGIRKI--LVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMS 196 (208) Q Consensus 132 ~~~~~~i~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a~~il~~~~ 196 (208) ++-++.. +...|...+ ..++..- .+...+...+.......+||||+|||+.||+++.+-. T Consensus 163 ~qd~~~~--y~~ng~~~~~k~~~~~~~---~~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k~~ 224 (228) T d1qwja_ 163 RQDWDGE--LYENGSFYFAKRHLIEMG---YLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFG 224 (228) T ss_dssp TTTSCCE--EEEEEEEEEEEHHHHHTT---CSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHS T ss_pred CCCCCCE--EEEEEEEEEEEHHHHHHC---CCCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHC T ss_conf 2356521--665569999809999648---8678988999869563687999999999999999828 No 18 >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Probab=99.69 E-value=3.3e-17 Score=116.16 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=70.4 Q ss_pred CEEEEECCCCCCCCC-----CCCCCEEECC-EEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC-------------- Q ss_conf 917886488753566-----6976026678-43798999999726872078725213344431010-------------- Q T0593 1 MKVAVLVGGVGRRIG-----MEKTEVMLCG-KKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEA-------------- 60 (208) Q Consensus 1 m~~vIlAaG~gtRlg-----~pK~ll~i~G-kpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~-------------- 60 (208) |-|||||||+||||+ .||+|+||+| +|||+|+++.+...+...++++.++..+....+.. T Consensus 12 ~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~ 91 (307) T d1yp2a2 12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 91 (307) T ss_dssp EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC T ss_pred EEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCC T ss_conf 17999899886668854569974447979998799999999998699889999035520111221102100012221222 Q ss_pred -CEEE--CCC-----CCHHHHHHHHHHHHHC-----CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf -0000--234-----4123677888877504-----97899827887688899999999985079879 Q T0593 61 -EFIW--DLH-----KGVGSIAGIHAALRHF-----GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDA 115 (208) Q Consensus 61 -~~~~--~~~-----~~~~~~~~~~~~~~~~-----~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~ 115 (208) .... ... ...+...++..+.... +.++++.+|.. ...+ +..+++.+...+..+ T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~-~~~d-~~~~~~~~~~~~~~~ 157 (307) T d1yp2a2 92 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHL-YRMD-YEKFIQAHRETDADI 157 (307) T ss_dssp EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEE-CCCC-HHHHHHHHHHTTCSE T ss_pred CCEEECEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCE-ECCC-HHHHHHHHHHCCCCC T ss_conf 21220206503455403541588887677650266650999357321-1430-344333332014552 No 19 >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Probab=99.69 E-value=2.9e-16 Score=110.74 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=77.1 Q ss_pred EEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHH--HHHHHCCCEEECCCCCHHHHHHHHHH Q ss_conf 1788648875356669760266784379899999972687207872521334--44310100000234412367788887 Q T0593 2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEK--LSSRYEAEFIWDLHKGVGSIAGIHAA 79 (208) Q Consensus 2 ~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208) -|||.|.|.|+|+.. |+|.+++|+|||+|+++++...+...++|.++.... ........+................+ T Consensus 3 i~iIpAR~gSkrip~-KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 81 (246) T d1vh1a_ 3 VVIIPARYASTRLPG-KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEV 81 (246) T ss_dssp EEEEECCCCCC--CC-TTTCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECC-----CHHHHHHH T ss_pred EEEEECCCCCCCCCC-CHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCEEECCCCCCCCHHHHHH T ss_conf 999823877867998-3145609955999999999976999689980675333201012432013215346652077778 Q ss_pred HH-----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 75-----04978998278876888999999999850798799 Q T0593 80 LR-----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208) Q Consensus 80 ~~-----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208) .. ..+.++.+.+|.|+++++.+..+++.+.......+ T Consensus 82 ~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~ 123 (246) T d1vh1a_ 82 VEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMA 123 (246) T ss_dssp HHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEE T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 775033312023211032111025677777654034434310 No 20 >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Probab=99.67 E-value=2.5e-15 Score=105.35 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=69.7 Q ss_pred CE--EEEECCCCCCCC----C--CCCCCEEE-CCEEHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH-CCC--EEECCC Q ss_conf 91--788648875356----6--69760266-78437989999997268-720787252133444310-100--000234 Q T0593 1 MK--VAVLVGGVGRRI----G--MEKTEVML-CGKKLIEWVLEKYSPFQ-TVFVCRDEKQAEKLSSRY-EAE--FIWDLH 67 (208) Q Consensus 1 m~--~vIlAaG~gtRl----g--~pK~ll~i-~Gkpli~~~i~~l~~~~-~~~~iv~~~~~~~~~~~~-~~~--~~~~~~ 67 (208) || |||||||+|||| . .||||+|+ +|+|||+|+++++.+.. ...++++..+........ ... +..... T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ii~E~~ 80 (268) T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEPL 80 (268) T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEESS T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 98128996687746288765689994232569998899999998637588420001346777777665113432033000 Q ss_pred CCHHHHHHHHHH----H-HHCCCEEEEECCCCCCCHHHHHHHHHHH---HCCCCEEE Q ss_conf 412367788887----7-5049789982788768889999999998---50798799 Q T0593 68 KGVGSIAGIHAA----L-RHFGSCVVAAIDMPFVKPEVLEHLYKEG---EKAGCDAL 116 (208) Q Consensus 68 ~~~~~~~~~~~~----~-~~~~~~lv~~~D~p~~~~~~i~~l~~~~---~~~~~~~~ 116 (208) + .+...++..+ . ...+.++++++|.++.........+... .+.+..++ T Consensus 81 ~-~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~ 136 (268) T d2cu2a2 81 G-RDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVA 136 (268) T ss_dssp C-CHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEE T ss_pred C-CCCCCCHHHHHHHHHCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCEEE T ss_conf 4-7763203567888750577616887232120220888887888999986498276 No 21 >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Probab=99.67 E-value=4.4e-16 Score=109.68 Aligned_cols=112 Identities=11% Similarity=0.096 Sum_probs=73.9 Q ss_pred EEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHCCCCEEEEE-CCHHH--HHHHHHCCCEEECCC----CCHHHHHH Q ss_conf 788648875356669760266784379899999972687207872-52133--444310100000234----41236778 Q T0593 3 VAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPFQTVFVCRD-EKQAE--KLSSRYEAEFIWDLH----KGVGSIAG 75 (208) Q Consensus 3 ~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~-~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~ 75 (208) |||+|+|.|+|+.. |+|++++|+|||+|+++++........|++ ++... .........+..... ........ T Consensus 7 aiIpar~~S~R~p~-K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (225) T d1eyra_ 7 AVILARQNSKGLPL-KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISG 85 (225) T ss_dssp EEEECCSCCSSSTT-GGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCHHHHSTTCCHHHH T ss_pred EEECCCCCCCCCCC-CCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHH T ss_conf 99806877858998-45014099188999999999759976377750222024566540430464111344321100000 Q ss_pred HHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 888775----0497899827887688899999999985079879 Q T0593 76 IHAALR----HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDA 115 (208) Q Consensus 76 ~~~~~~----~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~ 115 (208) ...+.. ..+.++.+.+|+||++++++..+++.+.....+. T Consensus 86 ~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~ 129 (225) T d1eyra_ 86 VIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGS 129 (225) T ss_dssp HHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCC T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCC T ss_conf 02111112455655999502334224422211000001446543 No 22 >d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]} Probab=98.35 E-value=1.2e-06 Score=55.40 Aligned_cols=172 Identities=12% Similarity=0.060 Sum_probs=87.6 Q ss_pred CEEEEEC-CCC-CCCCCC---CCCCEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEECCCCCHHHHHH Q ss_conf 9178864-887-535666---97602667843798999999726872078725213344431010000023441236778 Q T0593 1 MKVAVLV-GGV-GRRIGM---EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAG 75 (208) Q Consensus 1 m~~vIlA-aG~-gtRlg~---pK~ll~i~Gkpli~~~i~~l~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (208) |.|||.- .|. =|||.. ++.=..+ -+-|+.++++.++..+...++++..............+.. ...+...+ T Consensus 1 m~~iiPiK~~~aKTRL~~~L~~~~r~~L-~~~ml~~tl~~l~~~~~~~v~~vs~~~~~~~~~~~~~~~~---~~~~L~~a 76 (208) T d2i5ea1 1 MRAVIPYKKAGAKSRLSPVLSLQEREEF-VELMLNQVISSLKGAGIEQVDILSPSVYGLEEMTEARVLL---DEKDLNEA 76 (208) T ss_dssp CEEEEECCCTTTTGGGTTTSCHHHHHHH-HHHHHHHHHHHHHHTTCSEEEEEESSCTTCSSCCSSEEEE---CCSCHHHH T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCC---CCCCHHHH T ss_conf 9489805999885675752699999999-9999999999997389848999839577888864688444---78887999 Q ss_pred HHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHCCHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 888775-0497899827887688899999999985079879997389232022100067899999998712057899997 Q T0593 76 IHAALR-HFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPKHDYPEPLLAYYAESAADELERAILQGIRKILVPLE 154 (208) Q Consensus 76 ~~~~~~-~~~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 154 (208) +..+++ .++.++++.+|+|.++++.+..+.+ ..+..+..|..++.........+..... .-|..+...-.. T Consensus 77 l~~a~~~~~~~vliig~DlP~L~~~~l~~a~~---~~~d~Vi~Pa~DGG~~~l~~~~~~~~~~-----~~g~~S~~~h~~ 148 (208) T d2i5ea1 77 LNRYLKEAEEPVLIVMADLPLLSPEHIKEISS---TEKDVCIVPGKGGGTNALFIKNPSKYRV-----KYYGSSFLTHCS 148 (208) T ss_dssp HHHHHHHCCSCEEEECSCCTTCCHHHHHHHTT---CSSSEEEEECGGGCEEEEEESCGGGCCC-----CCSSSHHHHHHH T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH---CCCCEEEEECCCCCCCEEEECCCCCCCC-----CCCCCHHHHHHH T ss_conf 99999638887799647757689999999874---5784799853789856542268766675-----368512999999 Q ss_pred HCCEEEECCCCEEEECCCHHHCCCCCCHHHHHHH Q ss_conf 5261232145014422864420369898999999 Q T0593 155 RLNVVYYPVEKLRKFDKELISFFNINTPDDLKRA 188 (208) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~IdtpeDl~~a 188 (208) ... ...........+...+||||||||..+ T Consensus 149 ~a~----~~gl~~~~~~~~~l~~DIDtp~DL~~l 178 (208) T d2i5ea1 149 IAT----DSGQDFEIYDSFMAGTDIDEPEDLVEL 178 (208) T ss_dssp HHH----TTTCCEEECCCTTTTCCCCSHHHHHHH T ss_pred HHH----HCCCCEEEECCCCCCCCCCCHHHHHHH T ss_conf 999----889957972675303078998999999 No 23 >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=98.30 E-value=6e-07 Score=57.21 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=36.8 Q ss_pred EEEEECCCCCCCCC--CCCCCEEEC-CEEHHHHHHHHHH------HCCCCEEEEECC Q ss_conf 17886488753566--697602667-8437989999997------268720787252 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVMLC-GKKLIEWVLEKYS------PFQTVFVCRDEK 49 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i~-Gkpli~~~i~~l~------~~~~~~~iv~~~ 49 (208) -+|+||||+||||| .||.+++|+ |+++++..++++. .....+++.++. T Consensus 76 avv~LaGG~GTRLG~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~ 132 (378) T d2icya2 76 VVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSF 132 (378) T ss_dssp EEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECT T ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 999956886354689998260470899889999999999999984999878997787 No 24 >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Probab=97.84 E-value=1.1e-05 Score=50.01 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=30.8 Q ss_pred EEEEECCCCCCCCC--CCCCCEEE---CCEEHHHHHHHHHHH Q ss_conf 17886488753566--69760266---784379899999972 Q T0593 2 KVAVLVGGVGRRIG--MEKTEVML---CGKKLIEWVLEKYSP 38 (208) Q Consensus 2 ~~vIlAaG~gtRlg--~pK~ll~i---~Gkpli~~~i~~l~~ 38 (208) -+|+||||.||||| .||-++|+ .|+++++..++++.. T Consensus 104 avvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~e~i~~ 145 (501) T d1jv1a_ 104 AVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILK 145 (501) T ss_dssp EEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH T ss_conf 999978985666788889630142567887499999999999 No 25 >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Probab=58.38 E-value=5.6 Score=17.22 Aligned_cols=93 Identities=5% Similarity=-0.006 Sum_probs=52.3 Q ss_pred ECCEEHHHHHHHHHHHCCC--CEEEEECCHH---HHHHHHH-C--CCEEECCCCCHHHHHHHHHHHHHCCC--EEEEECC Q ss_conf 6784379899999972687--2078725213---3444310-1--00000234412367788887750497--8998278 Q T0593 23 LCGKKLIEWVLEKYSPFQT--VFVCRDEKQA---EKLSSRY-E--AEFIWDLHKGVGSIAGIHAALRHFGS--CVVAAID 92 (208) Q Consensus 23 i~Gkpli~~~i~~l~~~~~--~~~iv~~~~~---~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~lv~~~D 92 (208) .+....|...++.+.+... .++||..+.. ....... . ...........+...+...+++.+.. ++++.+| T Consensus 12 yn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~ge~i~~lD~D 91 (265) T d1omza_ 12 YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDD 91 (265) T ss_dssp SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTCCSSEEEEECTT T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 79989999999999738995969999898999609999987535653898723788823454254886896789996765 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 876888999999999850798799 Q T0593 93 MPFVKPEVLEHLYKEGEKAGCDAL 116 (208) Q Consensus 93 ~p~~~~~~i~~l~~~~~~~~~~~~ 116 (208) -.+.++.++.+++.+.+.+..++ T Consensus 92 -~~~~~~~l~~l~~~~~~~~~~~v 114 (265) T d1omza_ 92 -TLISAQDLVFAFSIWQQFPDQII 114 (265) T ss_dssp -EEECHHHHHHHHHHHTTSTTSEE T ss_pred -CCCCHHHHHHHHHHHHHCCCCCE T ss_conf -57787999999999985887422 No 26 >d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Probab=36.03 E-value=13 Score=15.18 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=18.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 03698989999999999971557 Q T0593 176 FFNINTPDDLKRAEEICSKMSTE 198 (208) Q Consensus 176 ~~~IdtpeDl~~a~~il~~~~~~ 198 (208) ++.-+.||||+.|.++++.+-.+ T Consensus 14 LL~S~~PeDLq~AN~LIK~mVke 36 (41) T d1j2jb_ 14 LLKSSHPEDLRAANKLIKEMVQE 36 (41) T ss_dssp HHTCSCHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHHHHH T ss_conf 86059926789999999999887 No 27 >d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.04 E-value=13 Score=15.04 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=18.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 03698989999999999971557 Q T0593 176 FFNINTPDDLKRAEEICSKMSTE 198 (208) Q Consensus 176 ~~~IdtpeDl~~a~~il~~~~~~ 198 (208) ++.=..||||+.|.++++.+-.+ T Consensus 14 LLkS~~PeDLqaANrLIK~mVke 36 (41) T d1j2jb_ 14 LLKSSHPEDLRAANKLIKEMVQE 36 (41) T ss_dssp HHTCSCHHHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHHHH T ss_conf 98359878999999999999888 No 28 >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Probab=28.97 E-value=17 Score=14.44 Aligned_cols=39 Identities=21% Similarity=0.026 Sum_probs=29.3 Q ss_pred CEEEEECCCCCCCCCCCCCCEEECCE-EHHHHHHHHHHHCCCCEEEEECCHH Q ss_conf 91788648875356669760266784-3798999999726872078725213 Q T0593 1 MKVAVLVGGVGRRIGMEKTEVMLCGK-KLIEWVLEKYSPFQTVFVCRDEKQA 51 (208) Q Consensus 1 m~~vIlAaG~gtRlg~pK~ll~i~Gk-pli~~~i~~l~~~~~~~~iv~~~~~ 51 (208) |+++-..|=.|| || |||.+++..+++.+..+.++..... T Consensus 1 Mkii~I~G~~gS------------GKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165) T d1xjca_ 1 MNVWQVVGYKHS------------GKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165) T ss_dssp CCEEEEECCTTS------------SHHHHHHHHHHHHHHTTCCEEEEECCC- T ss_pred CCEEEEEECCCC------------CHHHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 909999809999------------8999999999999867983799983167 No 29 >d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Probab=22.16 E-value=19 Score=14.13 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=37.8 Q ss_pred CEEEEECCCCCCCCCCCCCCEEECCEEHHHHHHHHHHHC--CCCEEEEECCHHH-H---HHHHHCCCEEECCC----CCH Q ss_conf 917886488753566697602667843798999999726--8720787252133-4---44310100000234----412 Q T0593 1 MKVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPF--QTVFVCRDEKQAE-K---LSSRYEAEFIWDLH----KGV 70 (208) Q Consensus 1 m~~vIlAaG~gtRlg~pK~ll~i~Gkpli~~~i~~l~~~--~~~~~iv~~~~~~-~---~~~~~~~~~~~~~~----~~~ 70 (208) |+.+||+.|.||= ++-+++++... ...+..++++... . .............. ... T Consensus 1 MkIaVl~SG~GSn---------------L~aLl~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (209) T d1jkxa_ 1 MNIVVLISGNGSN---------------LQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSRE 65 (209) T ss_dssp CEEEEEESSCCHH---------------HHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHH T ss_pred CEEEEEEECCCHH---------------HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEECCCCCCCC T ss_conf 9899998168277---------------9999999871899978999995798753120120134320232001234433 Q ss_pred HHHHHHHHHHHHCCCEEEEECC-CCCCCHHHHHH Q ss_conf 3677888877504978998278-87688899999 Q T0593 71 GSIAGIHAALRHFGSCVVAAID-MPFVKPEVLEH 103 (208) Q Consensus 71 ~~~~~~~~~~~~~~~~lv~~~D-~p~~~~~~i~~ 103 (208) ..-..+...++..+..+++.+. .-.+++++++. T Consensus 66 ~~~~~~~~~l~~~~~Dliv~~g~~~il~~~~l~~ 99 (209) T d1jkxa_ 66 AYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSH 99 (209) T ss_dssp HHHHHHHHHHGGGCCSEEEESSCCSCCCHHHHHH T ss_pred CHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHCC T ss_conf 3489999999860998899830568617055302 No 30 >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=20.31 E-value=25 Score=13.47 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=52.6 Q ss_pred EEECCE--EHHHHHHHHHHHCC--C---CEEEEECCHHH--------HHHHHHCCCEEECC-CCCHHHHHHHHHHHHHC- Q ss_conf 266784--37989999997268--7---20787252133--------44431010000023-44123677888877504- Q T0593 21 VMLCGK--KLIEWVLEKYSPFQ--T---VFVCRDEKQAE--------KLSSRYEAEFIWDL-HKGVGSIAGIHAALRHF- 83 (208) Q Consensus 21 l~i~Gk--pli~~~i~~l~~~~--~---~~~iv~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 83 (208) +|..++ ..|..+++.+.... . +++||..+... .........+.... ....|...+...++..+ T Consensus 28 Ip~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~ 107 (328) T d1xhba2 28 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR 107 (328) T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 92267817999999999996477779729999979997035799999999856897099973244321688789998631 Q ss_pred -CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf -97899827887688899999999985079879997 Q T0593 84 -GSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIP 118 (208) Q Consensus 84 -~~~lv~~~D~p~~~~~~i~~l~~~~~~~~~~~~v~ 118 (208) +.++++.+|+- +.++.++.+++.+.+....++++ T Consensus 108 gd~i~flD~D~~-~~p~~l~~l~~~~~~~~~~~v~~ 142 (328) T d1xhba2 108 GQVITFLDAHCE-CTAGWLEPLLARIKHDRRTVVCP 142 (328) T ss_dssp SSEEEEEESSEE-ECTTCHHHHHHHHHHCTTEEEEE T ss_pred CCEEEECCCCCC-CCHHHHHHHHHHHHCCCCEEEEC T ss_conf 100220176556-67369999999996389747741 Done!