Query T0594 pfc0360w, Plasmodium Falciparum, 140 residues
Match_columns 140
No_of_seqs 112 out of 1064
Neff 8.0
Searched_HMMs 11830
Date Mon Jul 5 08:57:49 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0594.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0594.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08327 AHSA1: Activator of H 99.8 1.1E-20 9.6E-25 142.1 10.4 118 11-135 1-122 (123)
2 PF10604 Polyketide_cyc2: Poly 98.7 1.2E-07 9.8E-12 63.3 11.8 128 2-135 2-138 (139)
3 PF06240 COXG: Carbon monoxide 98.2 1.5E-05 1.3E-09 50.4 11.5 127 7-135 2-139 (140)
4 PF03364 Polyketide_cyc: Polyk 96.1 0.016 1.3E-06 32.2 8.4 89 10-102 1-100 (130)
5 PF11687 DUF3284: Domain of un 95.7 0.052 4.4E-06 29.1 12.5 96 4-104 1-101 (120)
6 PF00407 Bet_v_1: Pathogenesis 94.8 0.1 8.7E-06 27.3 13.5 98 2-101 4-118 (151)
7 PF10698 DUF2505: Protein of u 87.7 0.67 5.7E-05 22.3 12.7 28 4-31 1-28 (159)
8 PF08982 DUF1857: Domain of un 86.2 0.82 6.9E-05 21.8 8.7 116 13-135 18-141 (148)
9 PF11485 DUF3211: Protein of u 40.4 8.5 0.00072 15.7 9.6 97 4-104 3-103 (136)
10 PF08622 Svf1: Svf1-like; Int 28.6 13 0.0011 14.5 2.9 38 62-99 167-205 (326)
No 1
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity . It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress . p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport . It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; PDB: 2il5_A 3eli_A 1x53_A 2gkc_A 1zxf_A 2gkd_A 1z94_C 1xuv_C 1xfs_A 2k5g_A ....
Probab=99.83 E-value=1.1e-20 Score=142.07 Aligned_cols=118 Identities=36% Similarity=0.637 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEE-CCC---EEEEEEEEEECCCEEEEEEECCCCCCCCCEEEEEE
Q ss_conf 79989999973397688886189976323456833787-032---11028999767918999981378888985089999
Q T0594 11 YVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSL-FSG---SILGEFTEITKPHKIVEKWKFRDWNECDYSTVTVE 86 (140)
Q Consensus 11 ~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~-~~g---~~~G~~~e~~p~~~i~~tw~~~~~~~~~~s~v~~~ 86 (140)
+||+++||+|||+|+.+++|+.+.....++++||.|.+ .+| ...|+|++++||++|+++|.+.++++...+.++++
T Consensus 1 ~ap~e~Vw~a~t~~e~l~~W~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~v~~~ 80 (123)
T PF08327_consen 1 DAPPERVWAALTDPEGLAQWFTTSEAEMDFRVGGRFRFDPDGKEFGWDGTILEIEPPQRIVFTWRMEDWEDGSESLVTFE 80 (123)
T ss_dssp SS-HHHHHHHTCSHHHHTTCTEEEEEEETS-S--EEEEECCCSEEEEEEEEEEEETTTEEEEEESECCCTCSS-EEEEEE
T ss_pred CCCHHHHHHHHCCHHHHCEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEE
T ss_conf 94989999997593788029787610332102988999636960001799999628979999997378887875799999
Q ss_pred EEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 8633899469999975877553321013453664155889999889851
Q T0594 87 FISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL 135 (140)
Q Consensus 87 ~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~ 135 (140)
|.+ .+++|+|+|+|++++..+. ..+.+++||.. .+++||+++
T Consensus 81 ~~~-~~~~T~l~~~~~~~~~~~~-----~~~~~~~Gw~~-~l~~L~~~l 122 (123)
T PF08327_consen 81 FEE-EGGGTRLTLTHSGFPEDDE-----EEMGCEQGWEQ-ALDRLKAYL 122 (123)
T ss_dssp EEE-ETTEEEEEEEEEHHHHHHH-----HHHHHH---HH-HHHHHHHHH
T ss_pred EEE-CCCCEEEEEEEECCCCCHH-----HHHHHHHHHHH-HHHHHHHHH
T ss_conf 998-4997899999976775268-----99999998999-999999986
No 2
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; PDB: 3f08_B 3cnw_A.
Probab=98.72 E-value=1.2e-07 Score=63.29 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=81.3
Q ss_pred EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCC-CCE-----EEECC-CEEEEEEEEEEC-CCEEEEEEECC
Q ss_conf 07899988779989999973397688886189976323456-833-----78703-211028999767-91899998137
Q T0594 2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKV-GGK-----FSLFS-GSILGEFTEITK-PHKIVEKWKFR 73 (140)
Q Consensus 2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~-Gg~-----~~~~~-g~~~G~~~e~~p-~~~i~~tw~~~ 73 (140)
.+++.+++|+|||++||+.++|++.+.+|+. .....+... ||. +...+ ..+..++++++| ++++.++..
T Consensus 2 ~~v~~s~~i~a~~e~V~~~l~d~~~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~-- 78 (139)
T PF10604_consen 2 ARVESSIEIPAPPEQVWDFLSDPDNWPRWMP-GVRRVEWIDPGGPGVGRTVRFGGRGEVREEVTEWDPDPRRVSYRVV-- 78 (139)
T ss_dssp B---EEEEE---HHHHHHH------HHHC-T-T-SEEEEE-----E--EEEE-----EEEEEEEEEETTTTEEEEEEE--
T ss_pred EEEEEEEEECCCHHHHHHHHHCCCCHHHHCC-CCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEEECCCEEEEEEE--
T ss_conf 7999999986999999998848456878297-8539999417997266899743557328999999728989999999--
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEECCCC-CCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 88889850899998633899469999975877-553321013453664155889999889851
Q T0594 74 DWNECDYSTVTVEFISVKENHTKLKLTHNNIP-ASNKYNEGGVLERCKNGWTQNFLHNIEVIL 135 (140)
Q Consensus 74 ~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~-~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~ 135 (140)
..+. .....++.+.+.++| |+|+++..--+ .............++..-++ .+++||+.+
T Consensus 79 ~~~~-~~~~~~~~~~~~~~g-T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~~~ 138 (139)
T PF10604_consen 79 PGPF-FRYEGTWTLEPTGDG-TRVTWTFEFEPPLPGWLMGPLARRAVKRFLER-GLERLKARL 138 (139)
T ss_dssp SSSE-ES-EEEEEEE----T-EEEEEE--BEE---SSS-HHHHHHHH---------HHHHHH-
T ss_pred ECCC-CEEEEEEEEEECCCC-EEEEEEEEEEEECCCHHHHHHHHHHHHHHHHH-HHHHHHCCC
T ss_conf 1697-289999999998999-99999999999524022379999999999999-999775510
No 3
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source .; PDB: 2pcs_A 2ns9_B.
Probab=98.18 E-value=1.5e-05 Score=50.43 Aligned_cols=127 Identities=11% Similarity=0.166 Sum_probs=71.5
Q ss_pred EEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECC----C------EEEEEEEEEECCCEEEEEEECCCCC
Q ss_conf 98877998999997339768888618997632345683378703----2------1102899976791899998137888
Q T0594 7 TEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFS----G------SILGEFTEITKPHKIVEKWKFRDWN 76 (140)
Q Consensus 7 ~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~----g------~~~G~~~e~~p~~~i~~tw~~~~~~ 76 (140)
+.++++|+++||+++.||+.++.=. |.....+ ..|..|.... | ....++.+++||++..+.-...+..
T Consensus 2 ~~~v~a~~e~vw~~l~D~~~l~~Ci-PG~~~~e-~~~~~~~~~~~v~vG~i~~~~~g~v~~~~~~~~~~~~i~~~G~g~~ 79 (140)
T PF06240_consen 2 SFTVPAPPEKVWQFLSDPENLASCI-PGCESIE-VVGDEYKGTVKVKVGPIKARFKGEVELSEIDPPNSYTIEGTGKGRG 79 (140)
T ss_dssp -EEESS-HHHHHHHHT-HHHHHHH------EEE-E---EEEEEE----GGG---EEEEEEEEEEETTTEEEEEEE-----
T ss_pred CEEECCCHHHHHHHHCCHHHHHHHC-CCCEEEE-ECCCEEEEEEEEEEECEEEEEEEEEEEEECCCCCEEEEEEEEECCC
T ss_conf 5880599999999862999998568-9938824-2497899999998705899999999999718996899999997376
Q ss_pred CCCCEEEEEEEEECCCCCEEEEEEECC-CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 898508999986338994699999758-77553321013453664155889999889851
Q T0594 77 ECDYSTVTVEFISVKENHTKLKLTHNN-IPASNKYNEGGVLERCKNGWTQNFLHNIEVIL 135 (140)
Q Consensus 77 ~~~~s~v~~~~~~~~~g~T~l~l~~~g-~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~ 135 (140)
.+......+.+....+++|+|+..-.. +.-.-......+.+.+..-.-++++++|+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~T~v~~~~d~~~~G~la~~g~~~i~~~a~~l~~~f~~~l~~~~ 139 (140)
T PF06240_consen 80 GGGSASAAITILLEPDGGTRVTYSADANVGGKLAQLGRRLIDSVARKLIEQFFECLAAKV 139 (140)
T ss_dssp ---EEE-EEEEEECSSS-EEEEEEEEEE----CCC----HHHHHHHHHHHHHHHHHCCCH
T ss_pred CCEEEEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 522347999997278996099999999977188986477899999999999999998651
No 4
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 2kcz_A 3ggn_B 2res_A 2rez_A 2rer_A 2kf2_A 2d4r_B 1t17_A.
Probab=96.14 E-value=0.016 Score=32.21 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=46.0
Q ss_pred ECCCHHHHHHHHCCHHHHHHHHCCC-CCCCCCCCCCEE----EECCC----EEEEEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf 7799899999733976888861899-763234568337----87032----11028999767918999981378888985
Q T0594 10 YYVPPEVLFNAFTDAYTLTRLSRGS-LAEVDLKVGGKF----SLFSG----SILGEFTEITKPHKIVEKWKFRDWNECDY 80 (140)
Q Consensus 10 i~a~~e~Vw~A~t~pe~~~~W~~~~-~~~~d~~~Gg~~----~~~~g----~~~G~~~e~~p~~~i~~tw~~~~~~~~~~ 80 (140)
|+||+++||+.++|.+...+|+..- ..+.--+.|+.. ..... ....++.+..++. |.+. ..+.+ -..
T Consensus 1 V~ap~~~v~~~i~D~e~~~~f~p~~~~v~vl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~~--~~~g~-f~~ 76 (130)
T PF03364_consen 1 VPAPPEEVWDVITDYENYPEFVPWVKEVRVLERDGNRTRARWRVGFGGFRETWTSRVTEQPPNE-ISFE--QISGP-FKS 76 (130)
T ss_dssp ESS-HHHHHHHHHTGGGHCCCSTTEEEEEEEECCCCEEEEEEEECSTSSEEEEEEEEEEETTTT-EEEE--CEE---ECE
T ss_pred CCCCHHHHHHHHHCHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECCEEEEEEEEEEEECCCE-EEEE--ECCCC-CCC
T ss_conf 9899899999998888889767378689999988997999999970678999999999987863-8789--63788-516
Q ss_pred EEEEEEEEECCC--CCEEEEEEEC
Q ss_conf 089999863389--9469999975
Q T0594 81 STVTVEFISVKE--NHTKLKLTHN 102 (140)
Q Consensus 81 s~v~~~~~~~~~--g~T~l~l~~~ 102 (140)
....+.+.+..+ |+|.++++++
T Consensus 77 ~~g~W~~~~~~~~~g~~~~~v~~~ 100 (130)
T PF03364_consen 77 FEGSWRFEPLGGNDGGTRTRVTFE 100 (130)
T ss_dssp EEEEEEEEE---EE---EEEEEEE
T ss_pred CEEEEEEEECCCCCCCCEEEEEEE
T ss_conf 699999999998777998999999
No 5
>PF11687 DUF3284: Domain of unknown function (DUF3284)
Probab=95.72 E-value=0.052 Score=29.10 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=66.7
Q ss_pred EEEEEEECCCHHHHHHHHCCHHH--HHHHHCCCCCCCCCCCCCEEEECC---CEEEEEEEEEECCCEEEEEEECCCCCCC
Q ss_conf 89998877998999997339768--888618997632345683378703---2110289997679189999813788889
Q T0594 4 FEITEEYYVPPEVLFNAFTDAYT--LTRLSRGSLAEVDLKVGGKFSLFS---GSILGEFTEITKPHKIVEKWKFRDWNEC 78 (140)
Q Consensus 4 i~i~~~i~a~~e~Vw~A~t~pe~--~~~W~~~~~~~~d~~~Gg~~~~~~---g~~~G~~~e~~p~~~i~~tw~~~~~~~~ 78 (140)
+.|+.++++|++.+|+.+.+.-. +.+-.+-....-++ .|=.|.-.. ....-++++++||++-+++...+.
T Consensus 1 MkI~~~l~vsa~~fF~~i~~s~~~Di~~~tgk~~~~~~L-~G~~Y~K~~~~~~~~~vkIt~~~~~~~Y~~~~~s~~---- 75 (120)
T PF11687_consen 1 MKITKTLNVSAKEFFDYIIRSLLYDIKQATGKKLPVKEL-AGFTYQKKISNGKKAKVKITEYEPNKKYAATFSSDR---- 75 (120)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHC-CCEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECC----
T ss_conf 958999677999999999999999999971997872224-782899973888558999999618957999998069----
Q ss_pred CCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 85089999863389946999997587
Q T0594 79 DYSTVTVEFISVKENHTKLKLTHNNI 104 (140)
Q Consensus 79 ~~s~v~~~~~~~~~g~T~l~l~~~g~ 104 (140)
..-++...+.+.++|.|+|++++.-.
T Consensus 76 ~~~~v~Y~l~~~~~~~~~vty~E~~~ 101 (120)
T PF11687_consen 76 GTFTVRYELKPLGEGKTEVTYSEDQE 101 (120)
T ss_pred CCEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 96899999988799958999999870
No 6
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis has confirmed earlier predictions of the protein structure and site of the major T-cell epitope . The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P.sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1fm4_A 2bk0_A 2vjg_A 1vjh_B 2q3q_B 2i9y_A 2flh_D 3c0v_C 2vne_A 2vq5_B ....
Probab=94.75 E-value=0.1 Score=27.28 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=60.0
Q ss_pred EEEEEEEEECCCHHHHHHHHC-CHHHHHHHHCCC------CCCCCCCCCCEEEECC----CE---EEEEEEEEECC-CEE
Q ss_conf 078999887799899999733-976888861899------7632345683378703----21---10289997679-189
Q T0594 2 MSFEITEEYYVPPEVLFNAFT-DAYTLTRLSRGS------LAEVDLKVGGKFSLFS----GS---ILGEFTEITKP-HKI 66 (140)
Q Consensus 2 ~~i~i~~~i~a~~e~Vw~A~t-~pe~~~~W~~~~------~~~~d~~~Gg~~~~~~----g~---~~G~~~e~~p~-~~i 66 (140)
.++..+.++++|++++|+|+. .+.++.+= .|. ..+.|..+||..+.+. +. +.-++..++.. +.+
T Consensus 4 ~~~~~E~~~~~~a~k~~k~~~~~~~l~pk~-~P~~i~sie~~eGdgg~gGSIk~~~f~~~~~~~~~Kerie~~D~~~~~~ 82 (151)
T PF00407_consen 4 GKLEVEIEVKVSADKLFKAFKSSDHLLPKV-LPHVIKSIELHEGDGGPGGSIKKWTFGEGGPFKYVKERIEAVDEENKTI 82 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHH-STTTEEEEEEEE--------EEEEEEETTSSEEEEEEEEEEEETTTTEE
T ss_pred EEEEEEEEECCCHHHHHHHHHCCCCCCCCC-CCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEE
T ss_conf 799999980579999999985576432201-8220116999847899997599999986866518999999845870399
Q ss_pred EEEEECCCC--CCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf 999813788--88985089999863389946999997
Q T0594 67 VEKWKFRDW--NECDYSTVTVEFISVKENHTKLKLTH 101 (140)
Q Consensus 67 ~~tw~~~~~--~~~~~s~v~~~~~~~~~g~T~l~l~~ 101 (140)
.|+- .+++ ..-....++....+..+|+|.++.+-
T Consensus 83 ~y~v-iEGd~l~~~~~~~~~~~~~~~~~gg~i~k~t~ 118 (151)
T PF00407_consen 83 TYTV-IEGDVLKDYKSFKVTEQKIPKGDGGCIAKWTI 118 (151)
T ss_dssp EEEE-EE-ECTCTTEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEE-EECCCCCCEEEEEEEEEECCCCCCCEEEEEEE
T ss_conf 9999-96665658489999999857899966999999
No 7
>PF10698 DUF2505: Protein of unknown function (DUF2505)
Probab=87.70 E-value=0.67 Score=22.34 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.1
Q ss_pred EEEEEEECCCHHHHHHHHCCHHHHHHHH
Q ss_conf 8999887799899999733976888861
Q T0594 4 FEITEEYYVPPEVLFNAFTDAYTLTRLS 31 (140)
Q Consensus 4 i~i~~~i~a~~e~Vw~A~t~pe~~~~W~ 31 (140)
|..+.+|++|+++||+|++|++.+..=+
T Consensus 1 f~~~~~~~~~~~~V~~~~~de~y~~~~~ 28 (159)
T PF10698_consen 1 FEVSVEYPAPVDRVHAAFTDEDYWRARL 28 (159)
T ss_pred CCEEEECCCCHHHHHHHHCCHHHHHHHH
T ss_conf 9178884899999999976999999999
No 8
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2ffs_A.
Probab=86.18 E-value=0.82 Score=21.83 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=61.5
Q ss_pred CHHHHHHHHCCHHHHHHHHCCCC--CCCCCCCCCEEE---ECCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 98999997339768888618997--632345683378---7032110289997679189999813788889850899998
Q T0594 13 PPEVLFNAFTDAYTLTRLSRGSL--AEVDLKVGGKFS---LFSGSILGEFTEITKPHKIVEKWKFRDWNECDYSTVTVEF 87 (140)
Q Consensus 13 ~~e~Vw~A~t~pe~~~~W~~~~~--~~~d~~~Gg~~~---~~~g~~~G~~~e~~p~~~i~~tw~~~~~~~~~~s~v~~~~ 87 (140)
+.++||+-|.---.-.+=|.+.. +++-.+.|..+. .+++..--....+.||.++.| ... ..+++++.+
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~~~~~~l~Rel~fg~~~v~e~v~~~~~~~v~f-----~~~--~G~~lt~~I 90 (148)
T PF08982_consen 18 TREQLWRGLVLKARQPQLFVPGIDSCEVLSESGTVLTRELHFGGAKVRERVTLYPPQRVDF-----AQA--DGSSLTNTI 90 (148)
T ss_dssp -HHHHH---HHHHH-GGGT-----EEEEEEE---EEEEEEE----EEEEEEEEETTTEEEE-----SS---B---EEEEE
T ss_pred CHHHHHHHHHHHHCCHHHCCCCCCEEEEEECCCCEEEEEEEECCCEEEEEEEECCCCEEEE-----ECC--CCCEEEEEE
T ss_conf 9999998888713684447463455899955898599999998965799999528837998-----648--897799998
Q ss_pred EECCCCCEEEEEEE-CCCCCCCC--CCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 63389946999997-58775533--21013453664155889999889851
Q T0594 88 ISVKENHTKLKLTH-NNIPASNK--YNEGGVLERCKNGWTQNFLHNIEVIL 135 (140)
Q Consensus 88 ~~~~~g~T~l~l~~-~g~~~~~~--~~~~~~~e~~~~GW~~~~~~~lk~~~ 135 (140)
.++.+|.-.|+++- .++|+.+. .......+..++.|.....+-++.+.
T Consensus 91 se~~~g~L~ltf~ye~~~p~~~~gs~ea~~~~~~~~~a~~~a~~~Tv~~iR 141 (148)
T PF08982_consen 91 SEPEPGELFLTFIYEWRLPGVEPGSEEAAAYQEIVKSAYKEADIDTVRVIR 141 (148)
T ss_dssp E-S-----EEEEEEE------S---------BHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 018998589999998235333799756788889999999999999999999
No 9
>PF11485 DUF3211: Protein of unknown function (DUF3211); PDB: 2ejx_A.
Probab=40.39 E-value=8.5 Score=15.67 Aligned_cols=97 Identities=9% Similarity=0.011 Sum_probs=64.3
Q ss_pred EEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECC----CEEEEEEEEEECCCEEEEEEECCCCCCCC
Q ss_conf 89998877998999997339768888618997632345683378703----21102899976791899998137888898
Q T0594 4 FEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFS----GSILGEFTEITKPHKIVEKWKFRDWNECD 79 (140)
Q Consensus 4 i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~----g~~~G~~~e~~p~~~i~~tw~~~~~~~~~ 79 (140)
+.++..-+..++.|-.-++||+-+-.-..|....++ ..+..|+..+ -...-......-+..++|...+...++..
T Consensus 3 ~~i~i~T~hd~e~v~~IlSDP~F~lp~l~p~ik~l~-~~~nsF~~~g~f~~~~~~~~g~v~vg~~~VtY~~~~~~g~~~g 81 (136)
T PF11485_consen 3 IEITIKTSHDIEVVLKILSDPEFFLPKLFPFIKSLK-VEENSFRAEGKFGRFPFEIKGRVYVGNNEVTYVFYFSPGPPNG 81 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT-HHHHHHHH-----EEE--STT--EEE--BTTB---EE-EEE----EEEEEEE----E---
T ss_pred EEEEECCCCCHHHEEEEECCCCEEECCCCCCEEEEE-CCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 899961689858807651395508001377147997-1796899999874688999999997567389999960258998
Q ss_pred CEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 5089999863389946999997587
Q T0594 80 YSTVTVEFISVKENHTKLKLTHNNI 104 (140)
Q Consensus 80 ~s~v~~~~~~~~~g~T~l~l~~~g~ 104 (140)
...+++.+ ..+.-.+.+.+.|.
T Consensus 82 ~Gkl~i~~---~~~~i~i~~eyeg~ 103 (136)
T PF11485_consen 82 NGKLTIQL---RNGEINIIFEYEGW 103 (136)
T ss_dssp ---EEEEE---ETTEEEEEE--S-H
T ss_pred CEEEEEEE---CCCEEEEEEEECCE
T ss_conf 26999981---59989999984116
No 10
>PF08622 Svf1: Svf1-like; InterPro: IPR013931 Proteins in this entry are involved in survival during oxidative stress .
Probab=28.58 E-value=13 Score=14.49 Aligned_cols=38 Identities=29% Similarity=0.663 Sum_probs=26.9
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEEECCC-CCEEEEE
Q ss_conf 7918999981378888985089999863389-9469999
Q T0594 62 KPHKIVEKWKFRDWNECDYSTVTVEFISVKE-NHTKLKL 99 (140)
Q Consensus 62 p~~~i~~tw~~~~~~~~~~s~v~~~~~~~~~-g~T~l~l 99 (140)
.|+..+-+|.|.......+|.|.++|.-+.+ |.|++++
T Consensus 167 kPhhaA~~WNF~~Fqs~~~Sav~MEFTTp~sYg~t~Vni 205 (326)
T PF08622_consen 167 KPHHAASRWNFLNFQSPTYSAVMMEFTTPPSYGSTTVNI 205 (326)
T ss_pred CCCHHHHCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 842012001058843887159999950685437706689
Done!