Query         T0594 pfc0360w, Plasmodium Falciparum, 140 residues
Match_columns 140
No_of_seqs    112 out of 1064
Neff          8.0 
Searched_HMMs 15564
Date          Mon Jul  5 08:57:02 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0594.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0594.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1x53a1 d.129.3.5 (A:8-139) Ac 100.0 2.5E-32 1.6E-36  213.3  13.9  129    2-139     4-132 (132)
  2 d1xn6a_ d.129.3.5 (A:) Hypothe  99.9 1.3E-24 8.3E-29  166.7  13.1  127    2-136     8-142 (143)
  3 d1z94a1 d.129.3.5 (A:2-144) Hy  99.9   5E-24 3.2E-28  163.1  16.1  127    2-136     2-141 (143)
  4 d2il5a1 d.129.3.5 (A:5-168) Hy  99.9 6.1E-24 3.9E-28  162.6  15.6  136    2-139     7-162 (164)
  5 d3elia1 d.129.3.5 (A:2-144) Un  99.9 1.8E-23 1.1E-27  159.8  15.1  126    2-135     1-142 (143)
  6 d2k5ga1 d.129.3.5 (A:1-183) Un  99.9 1.6E-23   1E-27  160.1  13.9  124    2-137    19-162 (183)
  7 d1xfsa_ d.129.3.5 (A:) Hypothe  99.9   2E-23 1.3E-27  159.4  13.2  131    2-136     5-160 (165)
  8 d1xuva_ d.129.3.5 (A:) Hypothe  99.9 2.5E-22 1.6E-26  152.8  14.7  131    2-135    12-155 (163)
  9 d1zxfa1 d.129.3.5 (A:1-155) Ca  99.9 7.9E-23 5.1E-27  155.9  12.1  130    3-135     5-148 (155)
 10 d1xn5a_ d.129.3.5 (A:) Hypothe  99.9 5.7E-22 3.6E-26  150.7  13.6  124    3-135     6-137 (138)
 11 d2nn5a1 d.129.3.5 (A:1-160) Hy  99.9 9.9E-22 6.4E-26  149.2  14.6  121    2-137    12-134 (160)
 12 d2b79a1 d.129.3.9 (A:1-137) Hy  99.3 1.2E-10   8E-15   82.0  13.4  126    2-135     1-135 (137)
 13 d3cnwa1 d.129.3.8 (A:3-140) Un  98.9 3.5E-08 2.3E-12   67.1  13.0  129    2-135     2-136 (138)
 14 d2qpva1 d.129.3.8 (A:1-133) Un  98.8 7.3E-08 4.7E-12   65.2  11.1  124    2-135     5-131 (133)
 15 d2ns9a1 d.129.3.10 (A:10-156)   98.6 5.7E-07 3.7E-11   59.8  12.6  132    2-136     3-145 (147)
 16 d2rera1 d.129.3.6 (A:1-155) Mu  98.5 2.7E-06 1.7E-10   55.8  12.6  129    2-135     3-144 (155)
 17 d2pcsa1 d.129.3.10 (A:1-147) H  98.3 1.5E-05 9.4E-10   51.3  13.3  132    3-136     2-145 (147)
 18 d2d4ra1 d.129.3.6 (A:2-147) Hy  98.2 2.5E-05 1.6E-09   49.9  13.1  126    3-134     2-140 (146)
 19 d2bk0a1 d.129.3.1 (A:2-154) Ma  97.0   0.013 8.3E-07   33.5  12.4  132    2-135     3-150 (153)
 20 d1fm4a_ d.129.3.1 (A:) Major t  96.8   0.018 1.2E-06   32.6  14.9   99    2-101     3-118 (159)
 21 d1txca1 d.129.3.1 (A:1-147) Pl  96.6   0.025 1.6E-06   31.7  12.6   99    2-101     3-117 (147)
 22 d1e09a_ d.129.3.1 (A:) Major t  96.1   0.047   3E-06   30.1  15.0   99    2-102     3-119 (159)
 23 d1xdfa1 d.129.3.1 (A:1-157) Pl  95.7    0.07 4.5E-06   29.0  13.2   98    2-101     3-117 (157)
 24 d1t17a_ d.129.3.6 (A:) Hypothe  92.4    0.26 1.7E-05   25.5   6.8   97    3-102     3-111 (148)
 25 d1icxa_ d.129.3.1 (A:) Plant p  91.7    0.43 2.8E-05   24.3  12.4   99    2-102     3-118 (155)
 26 d1vjha_ d.129.3.1 (A:) Hypothe  91.5    0.44 2.8E-05   24.2   8.0   77    3-100     6-86  (120)
 27 d2ffsa1 d.129.3.7 (A:1-151) Hy  91.4    0.45 2.9E-05   24.1  10.6  120   13-135    21-146 (151)
 28 d1jssa_ d.129.3.2 (A:) Cholest  71.1     2.7 0.00017   19.4   4.0   31    2-32     44-74  (199)
 29 d1em2a_ d.129.3.2 (A:) Lipid t  54.3     6.5 0.00042   17.1   3.4   31    2-32     52-83  (214)

No 1  
>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.98  E-value=2.5e-32  Score=213.34  Aligned_cols=129  Identities=31%  Similarity=0.678  Sum_probs=118.0

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCEEEEEEECCCCCCCCCE
Q ss_conf             07899988779989999973397688886189976323456833787032110289997679189999813788889850
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFSGSILGEFTEITKPHKIVEKWKFRDWNECDYS   81 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~g~~~G~~~e~~p~~~i~~tw~~~~~~~~~~s   81 (140)
                      .+|+++++|+|||++||+|||||+++++||. +.+++|+++||.|+++++++.|+|++++||++|+|+|++.+++++..+
T Consensus         4 ~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~-~~~~~d~~~Gg~f~~~~g~~~G~~~ev~p~~rlv~tw~~~~~~~~~~s   82 (132)
T d1x53a1           4 CKITLKETFLTSPEELYRVFTTQELVQAFTH-APATLEADRGGKFHMVDGNVSGEFTDLVPEKHIVMKWRFKSWPEGHFA   82 (132)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSC-SCCBCCCSTTCCCBBTTTTEECCEEEEETTTEEEEEEEETTSCTTCCE
T ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHC-CCCCCCCCCCCEEEEEECCEEEEEEEEECCCEEEEEEECCCCCCCCCE
T ss_conf             6999999978999999999749999974407-753134556977899833506999999079889999742888888768


Q ss_pred             EEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf             8999986338994699999758775533210134536641558899998898517899
Q T0594            82 TVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILGYPK  139 (140)
Q Consensus        82 ~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g~~~  139 (140)
                      +|+++|.+ .+++|+|+|+|+|+|+.       ..+++++||+++|+++||++|||-+
T Consensus        83 ~vt~~l~~-~~~~T~l~l~~~g~p~~-------~~e~~~~GW~~~~~~~lk~~fG~g~  132 (132)
T d1x53a1          83 TITLTFID-KNGETELCMEGRGIPAP-------EEERTRQGWQRYYFEGIKQTFGYGA  132 (132)
T ss_dssp             EEEEECCB-CSSCEEEEEEEEEEEHH-------HHHHHHHTTHHHHHHHHHHHTCCCC
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCCC-------HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999998-79949999999888830-------6899886677999999998747999


No 2  
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}
Probab=99.92  E-value=1.3e-24  Score=166.67  Aligned_cols=127  Identities=16%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECC--CEEEEEEEEEECCCEEEEEEECCCCCCCC
Q ss_conf             0789998877998999997339768888618997632345683378703--21102899976791899998137888898
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFS--GSILGEFTEITKPHKIVEKWKFRDWNECD   79 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~--g~~~G~~~e~~p~~~i~~tw~~~~~~~~~   79 (140)
                      .+|..++.|+||+++||+|||+|+++++||.+  .++++++||+|.+.+  +.+.|+|++++||++|+|+|...      
T Consensus         8 ~~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~--~~~~~~~G~~~~~~~~~g~~~g~v~~~~p~~~l~~tw~~~------   79 (143)
T d1xn6a_           8 NDIKQTIVFNASIQKVWSVVSTAEGIASWFMP--NDFVLEVGHEFHVQSPFGPSPCKVLEIDEPNHLSFSWDTD------   79 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTSCSHHHHTTSCC--BCCCCCTTCEECBCCTTCCCCEEEEEEETTTEEEEEETTT------
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHCEEEEC--CCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCC------
T ss_conf             80899999889999999986086772667333--6765136716999255552018999992895899997489------


Q ss_pred             CEEEEEEEEECCCCCEEEEEEECCCCCCCC------CCCHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             508999986338994699999758775533------210134536641558899998898517
Q T0594            80 YSTVTVEFISVKENHTKLKLTHNNIPASNK------YNEGGVLERCKNGWTQNFLHNIEVILG  136 (140)
Q Consensus        80 ~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~------~~~~~~~e~~~~GW~~~~~~~lk~~~g  136 (140)
                      .+.|+++|.+.++|+|+|+|+|+|+++.+.      ......++++++||...+.++||+++-
T Consensus        80 ~~~v~~~l~~~~~G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lE  142 (143)
T d1xn6a_          80 GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHC
T ss_conf             848999999769996999999917887415554201235789988755889999999999858


No 3  
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}
Probab=99.92  E-value=5e-24  Score=163.12  Aligned_cols=127  Identities=21%  Similarity=0.363  Sum_probs=107.1

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCC-----CCCCCCCCCCEEEECCC--------EEEEEEEEEECCCEEEE
Q ss_conf             078999887799899999733976888861899-----76323456833787032--------11028999767918999
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGS-----LAEVDLKVGGKFSLFSG--------SILGEFTEITKPHKIVE   68 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~-----~~~~d~~~Gg~~~~~~g--------~~~G~~~e~~p~~~i~~   68 (140)
                      .+|+++|+|+|||++||+|||+|+.+++||.+.     ...+|+++||.|++.+.        .+.|+|++++||++|+|
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~~i~~   81 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRY   81 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEE
T ss_conf             68999999889999999986498997663079983012575423023469999860899968789999998239969999


Q ss_pred             EEECCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             98137888898508999986338994699999758775533210134536641558899998898517
Q T0594            69 KWKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILG  136 (140)
Q Consensus        69 tw~~~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g  136 (140)
                      +|.+.+......+.|+++|.+. +++|+|+++|+++++...      .++++.||.. .|++|++++-
T Consensus        82 t~~~~~~~~~~~~~v~~~l~~~-~~gT~lt~~~~~~~~~~~------~~~~~~GW~~-~l~~L~~~lE  141 (143)
T d1z94a1          82 TDRFDDAGLPGDMITTITLAPL-SCGADLSIVQEGIPDAIP------PENCYLGWQQ-SLKQLAALVE  141 (143)
T ss_dssp             EEEESCCC---CEEEEEEEEEE-TTEEEEEEEEECCCTTSC------HHHHHHHHHH-HHHHHHHHHS
T ss_pred             EEECCCCCCCCCEEEEEEEEEC-CCCEEEEEEEECCCCHHH------HHHHHHHHHH-HHHHHHHHHC
T ss_conf             9951688888868999999982-998899999985898657------9999999999-9999999876


No 4  
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}
Probab=99.92  E-value=6.1e-24  Score=162.60  Aligned_cols=136  Identities=17%  Similarity=0.278  Sum_probs=111.9

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC-----CCCCCCCCCEEEECCC-------EEEEEEEEEECCCEEEEE
Q ss_conf             0789998877998999997339768888618997-----6323456833787032-------110289997679189999
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSL-----AEVDLKVGGKFSLFSG-------SILGEFTEITKPHKIVEK   69 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~-----~~~d~~~Gg~~~~~~g-------~~~G~~~e~~p~~~i~~t   69 (140)
                      .+|+++|.|+|||++||+|||||+.+.+||.+..     ..+++++||.|++.+.       .+.|+|++++||++|+|+
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~~i~~t   86 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYVKMT   86 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTEEEEE
T ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEE
T ss_conf             78999999779999999997297987275258996124788614668069998855875157789999997589889999


Q ss_pred             EECCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCC--------HHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf             8137888898508999986338994699999758775533210--------134536641558899998898517899
Q T0594            70 WKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNE--------GGVLERCKNGWTQNFLHNIEVILGYPK  139 (140)
Q Consensus        70 w~~~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~--------~~~~e~~~~GW~~~~~~~lk~~~g~~~  139 (140)
                      |++.+.++ ..+.+++.+.++.+|+|+|+++|++++..+....        ....+++..||.. +|++||+++.-..
T Consensus        87 ~~~~~~~~-~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~-~l~~L~~~lE~g~  162 (164)
T d2il5a1          87 IGMPGLSE-TQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFEL-MFDKMYHVIETST  162 (164)
T ss_dssp             ESCC--CC-CCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTS
T ss_pred             EECCCCCC-CCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCC
T ss_conf             85268899-9659999999828997899999960481675432343556678888888877999-9999999986148


No 5  
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=99.91  E-value=1.8e-23  Score=159.77  Aligned_cols=126  Identities=21%  Similarity=0.323  Sum_probs=103.8

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCC-------CCCCCCCCCCEEEECCC-------EEEEEEEEEECCCEEE
Q ss_conf             078999887799899999733976888861899-------76323456833787032-------1102899976791899
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGS-------LAEVDLKVGGKFSLFSG-------SILGEFTEITKPHKIV   67 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~-------~~~~d~~~Gg~~~~~~g-------~~~G~~~e~~p~~~i~   67 (140)
                      .+|.++++|+|||++||+|||||+++.+||.+.       ...+++++||.|.+.+.       .+.|+|++++||++|+
T Consensus         1 ael~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~rl~   80 (143)
T d3elia1           1 ADLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQSVG   80 (143)
T ss_dssp             CEEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEE
T ss_conf             96999999779999999986598897442389983156666787622476279999789996788899999817997899


Q ss_pred             EEEECCCCCC--CCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             9981378888--9850899998633899469999975877553321013453664155889999889851
Q T0594            68 EKWKFRDWNE--CDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        68 ~tw~~~~~~~--~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      |+|.+.+.+.  ...+.|+++|.+ .+++|+|+|+|+++++.      ...++++.||.. +|++|++++
T Consensus        81 ~t~~~~~~~~~~~~~~~vt~~l~~-~~~gT~l~~~~~~~~~~------~~~~~~~~GW~~-~L~~L~~~l  142 (143)
T d3elia1          81 FTWGWHDDDDRRGAESHVMFIVEP-CAKGARLILDHRELGDD------EMSLRHEEGWTS-SLRKLAAEL  142 (143)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCB-C--CEEEEEEEESCSCH------HHHHHHHHHHHH-HHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEEEEEEEE-CCCCEEEEEEEECCCCH------HHHHHHHHHHHH-HHHHHHHHH
T ss_conf             998616788888875899999997-69979999999748997------999899998999-999999975


No 6  
>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}
Probab=99.91  E-value=1.6e-23  Score=160.05  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=103.4

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECCC--------------------EEEEEEEEEE
Q ss_conf             07899988779989999973397688886189976323456833787032--------------------1102899976
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFSG--------------------SILGEFTEIT   61 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~g--------------------~~~G~~~e~~   61 (140)
                      .+|+++|+|+||+++||+|||+|+++++||.+  ..+++++||.|.+.++                    .+.|+|++++
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p--~~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~   96 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLADADKRARWLAG--GELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCE   96 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCC--CCCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHCHHHHHHHCCC--CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf             66999999579999999997096888541588--8752427878999953788753222221136787415789999986


Q ss_pred             CCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf             7918999981378888985089999863389946999997587755332101345366415588999988985178
Q T0594            62 KPHKIVEKWKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILGY  137 (140)
Q Consensus        62 p~~~i~~tw~~~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g~  137 (140)
                      ||++|+|+|.....  ...+.|+++|.+ .+++|+|+|+|+++++.+      ..+++..||.. +|++|++++..
T Consensus        97 p~~rl~~tw~~~~~--~~~s~v~~~l~~-~g~gT~ltl~~~~~~~~~------~~~~~~~GW~~-~L~~L~~~leg  162 (183)
T d2k5ga1          97 PPRVLALTWGGGAG--EAPSEVLFELSE-AGEQVRLVLTHTRLADRA------AMLDVAGGWHA-HLAVLAGKLAG  162 (183)
T ss_dssp             TTTEEEEECCCCSS--SSCCEEEEEEEE-CSSSEEEEEEEECCCSHH------HHHHHTTTTTT-HHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCC--CCCEEEEEEEEE-CCCCEEEEEEEECCCCHH------HHHHHHHHHHH-HHHHHHHHHCC
T ss_conf             78189998516889--876799999997-699399999995689846------67787653999-99999998789


No 7  
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}
Probab=99.90  E-value=2e-23  Score=159.44  Aligned_cols=131  Identities=18%  Similarity=0.253  Sum_probs=105.5

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC-----CCCCCCCCCEEEECC----C---EEEEEEEEEECCCEEEEE
Q ss_conf             0789998877998999997339768888618997-----632345683378703----2---110289997679189999
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSL-----AEVDLKVGGKFSLFS----G---SILGEFTEITKPHKIVEK   69 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~-----~~~d~~~Gg~~~~~~----g---~~~G~~~e~~p~~~i~~t   69 (140)
                      .+|+++|+|+||+++||+|||+|+.+++||.+..     .++|+++||+|.+.+    |   ...|+|++++||+||+|+
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~rl~~t   84 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKRLIWT   84 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTTEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHHHCCCCCCCCCEEECCCCEECCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEE
T ss_conf             08999999769999999997598998321789995215631352508518999987999666679999982499489999


Q ss_pred             EECCC-------------CCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             81378-------------88898508999986338994699999758775533210134536641558899998898517
Q T0594            70 WKFRD-------------WNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILG  136 (140)
Q Consensus        70 w~~~~-------------~~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g  136 (140)
                      |.+.+             ......+.++++|.+ .+++|+|+++|.+....+.  ......+|+.||.. .|++|++++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~~gT~lt~~~~~~~~~~~--~~~~~~g~~~GW~~-~l~~L~~~le  160 (165)
T d1xfsa_          85 SALVKNYRPAVPATTSDKECAHIVMTAVIELQP-TSSGTRYTACAMHNTPGQR--KLHEEMGFHEGWGT-TITQLEELLK  160 (165)
T ss_dssp             SSEEGGGEECCC-----------CCEEEEEEEE-CSSSEEEEEEEECSSHHHH--HHHHTTTHHHHHHH-HHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEEEEECCCHHHH--HHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf             850566565555444566777864799999997-6995899999986887788--99998779999999-9999999997


No 8  
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}
Probab=99.89  E-value=2.5e-22  Score=152.82  Aligned_cols=131  Identities=23%  Similarity=0.358  Sum_probs=104.1

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC-----CCCCCCCCCEEEECC----C---EEEEEEEEEECCCEEEEE
Q ss_conf             0789998877998999997339768888618997-----632345683378703----2---110289997679189999
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSL-----AEVDLKVGGKFSLFS----G---SILGEFTEITKPHKIVEK   69 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~-----~~~d~~~Gg~~~~~~----g---~~~G~~~e~~p~~~i~~t   69 (140)
                      .+|+++|+|+||+++||+|||||+++.+||.+..     ..+++++||.|.+.+    |   .+.|+|++++||+||+|+
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~rl~~t   91 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPERIIST   91 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEEECEECCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEE
T ss_conf             46999999689999999997296876221089994115650100007438999980578705789999994599789999


Q ss_pred             EECCCCCC-CCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             81378888-9850899998633899469999975877553321013453664155889999889851
Q T0594            70 WKFRDWNE-CDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        70 w~~~~~~~-~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      |.+.+.++ +..+.++++|++.++|+|++++ |.+++..+ ........+++.||.. +|++|++++
T Consensus        92 w~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~-~~~~~~~~-~~~~~~~~g~~~GW~~-~L~~L~~~l  155 (163)
T d1xuva_          92 FEFEGLPEKGHVILDTARFEALPGDRTKLTS-HSVFQTIE-DRDGMLQSGMEEGIND-SYERLDELL  155 (163)
T ss_dssp             EEETTSSSSCCCEEEEEEEEEETTTEEEEEE-EEECSSHH-HHHHHHHTTHHHHHHH-HHHHHHHHH
T ss_pred             EECCCCCCCCCCEEEEEEEEEECCCCEEEEE-EECCCCHH-HHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             8416788888758999999991897299999-97179878-9999999889999999-999999999


No 9  
>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}
Probab=99.89  E-value=7.9e-23  Score=155.85  Aligned_cols=130  Identities=15%  Similarity=0.290  Sum_probs=108.0

Q ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHHCCC-------CCCCCCCCCCEEEECCC----EEEEEEEEEECCCEEEEEEE
Q ss_conf             78999887799899999733976888861899-------76323456833787032----11028999767918999981
Q T0594             3 SFEITEEYYVPPEVLFNAFTDAYTLTRLSRGS-------LAEVDLKVGGKFSLFSG----SILGEFTEITKPHKIVEKWK   71 (140)
Q Consensus         3 ~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~-------~~~~d~~~Gg~~~~~~g----~~~G~~~e~~p~~~i~~tw~   71 (140)
                      +|..+++|+||+++||+|||+  .+.+||.+.       ...+++++||.|.+.+.    .+.|+|++++||+||+|+|+
T Consensus         5 ~v~~~~~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~gG~~~~~~~dG~~~~~g~v~ei~p~~rl~~tw~   82 (155)
T d1zxfa1           5 FVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIGWR   82 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETTTTEEECCCTTTSCCCCEEEEEEETTTEEEEECC
T ss_pred             EEEEEEEEECCHHHHHHHHHH--HHHHHCCCCCCCCEEEEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCEEEEEEE
T ss_conf             599999996999999999773--067525999977247889886679866999714532153279999954707999982


Q ss_pred             CCCC---CCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             3788---889850899998633899469999975877553321013453664155889999889851
Q T0594            72 FRDW---NECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        72 ~~~~---~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      +.+.   +....|.|+++|++.++|+|+|+|+|+|++..+........+++..||.. +|++|++++
T Consensus        83 ~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~g~~~~~~~~~~~~~~~~~~GW~~-~L~~L~~~l  148 (155)
T d1zxfa1          83 LNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPT-ILQSFQDKI  148 (155)
T ss_dssp             CSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHH-HHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             178644344654599999986179989999999456766615689998666453999-999999986


No 10 
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}
Probab=99.88  E-value=5.7e-22  Score=150.66  Aligned_cols=124  Identities=20%  Similarity=0.306  Sum_probs=103.8

Q ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECC--CEEEEEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf             789998877998999997339768888618997632345683378703--211028999767918999981378888985
Q T0594             3 SFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFS--GSILGEFTEITKPHKIVEKWKFRDWNECDY   80 (140)
Q Consensus         3 ~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~--g~~~G~~~e~~p~~~i~~tw~~~~~~~~~~   80 (140)
                      +|++++.|+|||++||+|||+|+.+++||.+  ...++++|+.|.+.+  +.+.|+|++++||++|+|+|...      .
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~--~~~~~~~g~~~~~~~~~~~~~g~v~~~~~~~~l~~~~~~~------~   77 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVSTSEGLAFWFME--NDLKAETGHHFHLQSPFGPSPCQVTDVERPIKLSFTWDTD------G   77 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTTSHHHHHTTSCC--BCCCSCTTCEEEEECSSCEEEEEEEEEETTTEEEEEETTT------T
T ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHCEECCC--CCCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEEEECCC------C
T ss_conf             3999999779999999988098886117557--7654033045786278653138999970795899996488------7


Q ss_pred             EEEEEEEEECCCCCEEEEEEECCCCCCCCCC------CHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             0899998633899469999975877553321------013453664155889999889851
Q T0594            81 STVTVEFISVKENHTKLKLTHNNIPASNKYN------EGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        81 s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~------~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      +.++++|.+ .+++|+|+|+|+|++..+...      .....+++++||...+.++||+++
T Consensus        78 ~~v~~~l~~-~~~gT~lt~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~v  137 (138)
T d1xn5a_          78 WSVTFHLKE-EENGTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIV  137 (138)
T ss_dssp             EEEEEEEEE-CSSSEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred             EEEEEEEEE-CCCCEEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             599999998-599699999995688730666541210157999998869999999999974


No 11 
>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}
Probab=99.88  E-value=9.9e-22  Score=149.20  Aligned_cols=121  Identities=13%  Similarity=0.214  Sum_probs=99.8

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEC--CCEEEEEEEEEECCCEEEEEEECCCCCCCC
Q ss_conf             078999887799899999733976888861899763234568337870--321102899976791899998137888898
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLF--SGSILGEFTEITKPHKIVEKWKFRDWNECD   79 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~--~g~~~G~~~e~~p~~~i~~tw~~~~~~~~~   79 (140)
                      ..|+++|.|+|||++||+|||+|+++++||.+ ....++++||.|.+.  ++...|+|++++||++|+|+|.        
T Consensus        12 ~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~-~~~~d~~~GG~~~~~~~~~~~~~~v~~~epp~rL~~tW~--------   82 (160)
T d2nn5a1          12 IYFGTERAISASPQTIWRYLTETDKLKQWFPE-LEIGELGVNGFWRFILPDFEETMPFTDYAEEKYLGVTWD--------   82 (160)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHHHHHHCTT-EEEEECSTTCEEEEEETTEEEEEEEEEEETTTEEEEEET--------
T ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHCCC-CCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEC--------
T ss_conf             79999999669999999997197889863798-776555679725887689985418999953878999946--------


Q ss_pred             CEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf             5089999863389946999997587755332101345366415588999988985178
Q T0594            80 YSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILGY  137 (140)
Q Consensus        80 ~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g~  137 (140)
                      .+.|+++|.+..+|+|+|+++|++.+....     ....+..||.. +|++|++++..
T Consensus        83 ~~~v~~eL~~~~~~~t~l~l~~~~~~~~~~-----~~~~~~~GW~~-~Ld~L~~~leg  134 (160)
T d2nn5a1          83 TGIIYFDLKEQAPHQTLLVFSESLPENFTT-----PRHKDIAGWSI-VLNRLKQVVET  134 (160)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEEEECTTCSS-----CHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCEEEEEEEEECCCCCCC-----HHHHHHHHHHH-HHHHHHHHHCC
T ss_conf             855899985178875999999825865542-----22566889999-99999999767


No 12 
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}
Probab=99.25  E-value=1.2e-10  Score=82.00  Aligned_cols=126  Identities=10%  Similarity=0.078  Sum_probs=89.4

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCC----CCCCCCCCCEEEECC---CEEEEEEEEEECCCEEEEEEECCC
Q ss_conf             0789998877998999997339768888618997----632345683378703---211028999767918999981378
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSL----AEVDLKVGGKFSLFS---GSILGEFTEITKPHKIVEKWKFRD   74 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~----~~~d~~~Gg~~~~~~---g~~~G~~~e~~p~~~i~~tw~~~~   74 (140)
                      +.++.+.+|+||||+||+.++|++.+.+|+. ..    ...++.+|..+.+..   ..+.-++++++|+++|.+....+ 
T Consensus         1 m~~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~~-   78 (137)
T d2b79a1           1 MKFSFELAVNTKKEDAWTYYSQVNQWFVWEG-DLEQISLEGEFTTGQKGKMKMEDMPELAFTLVEVRENQCFSDLTATP-   78 (137)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCGGGGGGTST-TEEEEEESSSSSTTCEEEEEETTSCCEEEEECCCBTTTEEEEEEEET-
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCCCCC-CCCCEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-
T ss_conf             9059999984999999999865530734457-64210312556620899999757763033100005774799994365-


Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEEE--CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             888985089999863389946999997--5877553321013453664155889999889851
Q T0594            75 WNECDYSTVTVEFISVKENHTKLKLTH--NNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        75 ~~~~~~s~v~~~~~~~~~g~T~l~l~~--~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                         .......+.+.+..+|+|+|+.+.  +|....  .........++.++++. +++||+++
T Consensus        79 ---~~~~~~~~~~~~~~~g~t~vt~~~~~~g~~~~--~~~~~~~~~v~~~~~~~-l~~LK~~~  135 (137)
T d2b79a1          79 ---FGNVLFEHEILENPDGTISLRHSVSLTDSDTT--EEALAFLKQIFADVPES-VGKLKQIL  135 (137)
T ss_dssp             ---TEEEEEEEEEEECTTSCEEEEEEEEECSCSCC--TTHHHHHHHHHTTHHHH-HHHHHHHH
T ss_pred             ---CEEEEEEEEECCCCCCCEEEEEEEECCCCCCH--HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf             ---30466699985589996899999860466506--78999999998879999-99999986


No 13 
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}
Probab=98.88  E-value=3.5e-08  Score=67.14  Aligned_cols=129  Identities=12%  Similarity=0.151  Sum_probs=83.4

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEC---CC-EEEEEEEEEE-CCCEEEEEEECCCCC
Q ss_conf             078999887799899999733976888861899763234568337870---32-1102899976-791899998137888
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLF---SG-SILGEFTEIT-KPHKIVEKWKFRDWN   76 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~---~g-~~~G~~~e~~-p~~~i~~tw~~~~~~   76 (140)
                      ..++.+.+|+||||+||+.++|++.+.+|+. .........+|..+..   +| .+.-+++.++ +++++.|+....+.+
T Consensus         2 ~~~~~si~I~A~pe~VW~~v~df~~~~~W~p-~v~~~~~~~~G~~R~~~~~~g~~~~E~l~~~d~~~~~~~y~~~~~~~p   80 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQLIGGFNSLPDWLP-YIPSSKLTEGGRVRHLANPDGDTIIERLEVFNDKERYYTYSIMNAPFP   80 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHHHCCTTCGGGTCT-TCSEEEEEGGGTEEEEECTTCCEEEEEEEEEETTTTEEEEEEEECSSS
T ss_pred             CCEEEEEEEECCHHHHHHHHHCCCCHHHHHC-CCCEEEEECCCEEEEEEECCCCEEEEEEEEEECCCCEEEEEEECCCCC
T ss_conf             9379999996899999998757040678733-454147505750699980687536799999707772899999338876


Q ss_pred             CCCCEEEEEEEEECCC-CCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             8985089999863389-9469999975877553321013453664155889999889851
Q T0594            77 ECDYSTVTVEFISVKE-NHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        77 ~~~~s~v~~~~~~~~~-g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      .. .-..++.+.+..+ ++|+|+.+..--|..  ...+.....+++.|+. -|++||+.|
T Consensus        81 ~~-~~~~~~~l~p~~~g~~t~v~w~~~f~p~~--~~~~~~~~~~~~~~~~-~l~~L~~~f  136 (138)
T d3cnwa1          81 VT-NYLSTIQVKEGTESNTSLVEWSGTFTPVE--VSDEEAINLFHGIYSD-GLKALQQAF  136 (138)
T ss_dssp             EE-EEEEEEEEEECSSTTCEEEEEEEEEEESS--SCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             CE-EEEEEEEEEECCCCCEEEEEEEEEEECCC--CCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             00-05899999997899858999999996399--9979999999999999-999999864


No 14 
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=98.75  E-value=7.3e-08  Score=65.23  Aligned_cols=124  Identities=13%  Similarity=0.021  Sum_probs=82.8

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEC---CCEEEEEEEEEECCCEEEEEEECCCCCCC
Q ss_conf             078999887799899999733976888861899763234568337870---32110289997679189999813788889
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLF---SGSILGEFTEITKPHKIVEKWKFRDWNEC   78 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~---~g~~~G~~~e~~p~~~i~~tw~~~~~~~~   78 (140)
                      .+.+++.+|++|+++||++|+|++.+.+|.. .........|+.+...   .|.+..++++..|+++|.+.-...   ++
T Consensus         5 ~~~~~~i~I~~p~~~v~~~~~d~~~~p~w~~-~l~~~~~~~~~~~~~~~~~~G~~~~~i~~~~p~~~i~w~~~~~---~~   80 (133)
T d2qpva1           5 QSRIIHLSVEKPWAEVYDFAANPGNMPRWAA-GLAGGLEADGEDWIAKGGPLGEVRVNFAPHNEFGVIDHVVTLP---DG   80 (133)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGGGGGTCG-GGTTCCEEETTEEEEECSSSCEEEEEECCCCSSCBCCEEEECT---TS
T ss_pred             EEEEEEEEECCCHHHHHHHHHCHHHCCHHHH-CCCEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEEEEEECC---CC
T ss_conf             5799999987999999998869554311431-1341689669827997158872799999749998999998259---99


Q ss_pred             CCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             850899998633899469999975877553321013453664155889999889851
Q T0594            79 DYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        79 ~~s~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      ....+++...+ .+++|.+.++-. .++ .  ......+...+++++- |++||+++
T Consensus        81 ~~g~v~fr~~~-~g~gt~v~~~~~-~pp-g--~~~~~~~~~~~~v~~d-L~rlK~l~  131 (133)
T d2qpva1          81 LKVYNALRVTP-NGSGTEVSFTLL-RLE-G--MTDEDFEQDASAITAD-LEMLKSLL  131 (133)
T ss_dssp             CEEEEEEEEEE-ETTEEEEEEEEE-CCT-T--CCHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             CEEEEEEEECC-CCCEEEEEEEEE-ECC-C--CCHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf             78899999926-998089999997-089-9--7567777799999999-99999986


No 15 
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}
Probab=98.63  E-value=5.7e-07  Score=59.81  Aligned_cols=132  Identities=15%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCC---CCCCEEEECCC------EEEEEEEEEECCCEEEEEEEC
Q ss_conf             078999887799899999733976888861899763234---56833787032------110289997679189999813
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDL---KVGGKFSLFSG------SILGEFTEITKPHKIVEKWKF   72 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~---~~Gg~~~~~~g------~~~G~~~e~~p~~~i~~tw~~   72 (140)
                      +.++-+.+|+|||++||+.++|++.+.+|+. .......   ..++......+      ...-.+....++......+..
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFP-GFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSG   81 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHHHGGGST-TEEEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred             EEEEEEEEECCCHHHHHHHHHCHHHHHHCCC-CHHHEEECCCCCCEEEEEEEEEEEEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf             8998899976999999998749766433565-102103036665405799999986676314434540588622578864


Q ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCC--CCCCCCHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             7888898508999986338994699999758775--533210134536641558899998898517
Q T0594            73 RDWNECDYSTVTVEFISVKENHTKLKLTHNNIPA--SNKYNEGGVLERCKNGWTQNFLHNIEVILG  136 (140)
Q Consensus        73 ~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g~~~--~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g  136 (140)
                      ............+.+.+ .+++|+|+++...-..  ............+++..+ .++++||+-++
T Consensus        82 ~~~~~~~~~~~~~~l~~-~~~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~-~~l~~lk~~~~  145 (147)
T d2ns9a1          82 RGAGSTLDFTLRFAVEP-SGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMIN-DVISGVKRELG  145 (147)
T ss_dssp             ECSSEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred             ECCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             03662000489999874-499869999999996855788789999999999999-99999999874


No 16 
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}
Probab=98.47  E-value=2.7e-06  Score=55.77  Aligned_cols=129  Identities=9%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCC------CCCCCEEEECC---CEEE--EEEEEEECCC-EEEEE
Q ss_conf             07899988779989999973397688886189976323------45683378703---2110--2899976791-89999
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVD------LKVGGKFSLFS---GSIL--GEFTEITKPH-KIVEK   69 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d------~~~Gg~~~~~~---g~~~--G~~~e~~p~~-~i~~t   69 (140)
                      .+++-+.+|+|||++||+.++|++.+.+|+. ......      ...+..+....   +...  ......+++. ++.+.
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFS-EYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHRVPDKGSRTVRAH   81 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCGGGHHHHCS-SEEEEEEEECCSSCEEEEEEECCCTTSCCCEEEEEEEEEGGGTEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHCHHHHHHHHH-HCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEECCCCCEEEEE
T ss_conf             7778899987999999999977666766511-200789960488725899999973263368899999983886189999


Q ss_pred             EECCCCCCCCCEEEEEEEEECCCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             813788889850899998633899469999975-877553321013453664155889999889851
Q T0594            70 WKFRDWNECDYSTVTVEFISVKENHTKLKLTHN-NIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        70 w~~~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~-g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      .  .........+..+.|.+ .+++|++++++. .+..........+...++.+... .|++||+.+
T Consensus        82 ~--~~~~~~~~~~~~w~~~~-~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~lk~~~  144 (155)
T d2rera1          82 R--VETGPFAYMNLHWTYRA-VAGGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRA-NMERIKKII  144 (155)
T ss_dssp             E--SSCTTEEEEEEEEEEEE-ETTEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             E--ECCCCCEEEEEEEEEEE-CCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             4--05765100689999961-477659999999998788523089999999877899-999999999


No 17 
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=98.32  E-value=1.5e-05  Score=51.29  Aligned_cols=132  Identities=12%  Similarity=0.051  Sum_probs=79.3

Q ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEE----CCC------EEEEEEEEEECCCEEEEEEEC
Q ss_conf             7899988779989999973397688886189976323456833787----032------110289997679189999813
Q T0594             3 SFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSL----FSG------SILGEFTEITKPHKIVEKWKF   72 (140)
Q Consensus         3 ~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~----~~g------~~~G~~~e~~p~~~i~~tw~~   72 (140)
                      .+.=+.+|+||||+||+.++|++.+..+. |..........+.+..    .-+      ....++....+++.....+..
T Consensus         2 n~s~~~~i~~~~e~v~~~l~D~~~~~~~~-Pg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSKLMDPSILSKCI-MGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYKLLVNG   80 (147)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHHHHHHHS-TTEEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHCCHHHHHHHC-CCHHHCEECCCCEEEEEEEEEECCEEEEEEEEEEEECCCCCCCEEEEECC
T ss_conf             87862996799999999972999987558-15523110379778888998523315666789997135763103576404


Q ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEEECC-CCC-CCCCCCHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             7888898508999986338994699999758-775-533210134536641558899998898517
Q T0594            73 RDWNECDYSTVTVEFISVKENHTKLKLTHNN-IPA-SNKYNEGGVLERCKNGWTQNFLHNIEVILG  136 (140)
Q Consensus        73 ~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g-~~~-~~~~~~~~~~e~~~~GW~~~~~~~lk~~~g  136 (140)
                      ..............+.+..+++|+|++.-+- +.. ............+++-.+ .+++++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~-~f~~~~~~~l~  145 (147)
T d2pcsa1          81 EGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLIS-DFFKKIQKEIA  145 (147)
T ss_dssp             EETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CCCCCHHCCEEEEEEECCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             322210012357764136688579999999997837999999999999999999-99999999862


No 18 
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}
Probab=98.24  E-value=2.5e-05  Score=49.88  Aligned_cols=126  Identities=15%  Similarity=0.076  Sum_probs=74.1

Q ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCC--CCCCCE----EEE--CCC--EEEEEEEEEECCCEEEEEEEC
Q ss_conf             7899988779989999973397688886189976323--456833----787--032--110289997679189999813
Q T0594             3 SFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVD--LKVGGK----FSL--FSG--SILGEFTEITKPHKIVEKWKF   72 (140)
Q Consensus         3 ~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d--~~~Gg~----~~~--~~g--~~~G~~~e~~p~~~i~~tw~~   72 (140)
                      .++-++.|+|||++||+.++|.+.+.+|+. ......  -+.|+.    +..  ...  ....+++...++++|.+.-..
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p-~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDLEGLKPYLK-EVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEWDDENLRNRFFSPE   80 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCT-TEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHCHHHHHHHCC-CCEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEEECC
T ss_conf             789999978999999999978666776444-6189999985699416899997635669999999992789889999865


Q ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEEECC---CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             7888898508999986338994699999758---7755332101345366415588999988985
Q T0594            73 RDWNECDYSTVTVEFISVKENHTKLKLTHNN---IPASNKYNEGGVLERCKNGWTQNFLHNIEVI  134 (140)
Q Consensus        73 ~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~g---~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~  134 (140)
                        .+- .....++.|.+ .+++|+++++.+-   .+.............+++..+. .+++||+-
T Consensus        81 --g~~-~~~~g~w~l~~-~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~  140 (146)
T d2d4ra1          81 --GDF-DRYEGTWVFLP-EGEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVES-LLKGLEER  140 (146)
T ss_dssp             --ESC-SEEEEEEEEEE-CSSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             --CCC-CEEEEEEEEEE-CCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf             --882-03799999975-69966999999999758637889999999999999999-99999999


No 19 
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}
Probab=96.95  E-value=0.013  Score=33.47  Aligned_cols=132  Identities=14%  Similarity=0.088  Sum_probs=67.2

Q ss_pred             EEEEEEEEECCCHHHHHHHHC-CHHH-HHHHHCCCC----CCCCCCCCCE--EEECCC----EEEEEEEEEECCC-EEEE
Q ss_conf             078999887799899999733-9768-888618997----6323456833--787032----1102899976791-8999
Q T0594             2 MSFEITEEYYVPPEVLFNAFT-DAYT-LTRLSRGSL----AEVDLKVGGK--FSLFSG----SILGEFTEITKPH-KIVE   68 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t-~pe~-~~~W~~~~~----~~~d~~~Gg~--~~~~~g----~~~G~~~e~~p~~-~i~~   68 (140)
                      .+++.+.++++|++++|+|+. |... +-+......    .+.|-.+|..  +.+..+    .+.-++.+++..+ .+.|
T Consensus         3 ~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sveveGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~y   82 (153)
T d2bk0a1           3 QTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDY   82 (153)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEEESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCEEEE
T ss_conf             59999996257999999988605420266345451669999889999769999984695423668999999467668999


Q ss_pred             EEECCCC-CCCCCE--EEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             9813788-889850--899998633899469999975877553321013453664155889999889851
Q T0594            69 KWKFRDW-NECDYS--TVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        69 tw~~~~~-~~~~~s--~v~~~~~~~~~g~T~l~l~~~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      +- .+++ -...+.  ..++.+.+.++|+|.++.+..--+..+.............+-.. ++..+++|+
T Consensus        83 ~v-iEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~-~~K~iE~YL  150 (153)
T d2bk0a1          83 SV-IDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTA-LFKALEAYL  150 (153)
T ss_dssp             EE-EESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             EE-EECCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             99-944532165799999999821899970799999999899998997899989999988-999999987


No 20 
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
Probab=96.77  E-value=0.018  Score=32.58  Aligned_cols=99  Identities=14%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             EEEEEEEEECCCHHHHHHHH-CCHHHH-HHHHCCCCC-----CCCCCCCCE--EEECCC----EEEEEEEEEE-CCCEEE
Q ss_conf             07899988779989999973-397688-886189976-----323456833--787032----1102899976-791899
Q T0594             2 MSFEITEEYYVPPEVLFNAF-TDAYTL-TRLSRGSLA-----EVDLKVGGK--FSLFSG----SILGEFTEIT-KPHKIV   67 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~-t~pe~~-~~W~~~~~~-----~~d~~~Gg~--~~~~~g----~~~G~~~e~~-p~~~i~   67 (140)
                      ++++.+++.++|++++|+|+ .+...+ .+|+.....     +.|-.+|..  +.+..+    .+.-++.+++ .++.+.
T Consensus         3 ~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~   82 (159)
T d1fm4a_           3 FNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYN   82 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEEE
T ss_conf             59987766057989999998707432254216862679999778999887899996589971489999998714325899


Q ss_pred             EEEECCCC-CCCCCE--EEEEEEEECCCCCEEEEEEE
Q ss_conf             99813788-889850--89999863389946999997
Q T0594            68 EKWKFRDW-NECDYS--TVTVEFISVKENHTKLKLTH  101 (140)
Q Consensus        68 ~tw~~~~~-~~~~~s--~v~~~~~~~~~g~T~l~l~~  101 (140)
                      |+- .+++ -...+.  ..++.+.+.++|+|.+..+-
T Consensus        83 y~v-iEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~  118 (159)
T d1fm4a_          83 YSV-IEGGPVGDTLEKISNEIKIVATPDGGCVLKISN  118 (159)
T ss_dssp             EEE-EEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             EEE-EECCCCCCCEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf             999-916656554689999999853899956999999


No 21 
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}
Probab=96.58  E-value=0.025  Score=31.74  Aligned_cols=99  Identities=17%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             EEEEEEEEECCCHHHHHHHHC-CHHHHHHHHCCCCC-----CCCCCCCCE--EEECCCE----EEEEEEEEECC-CEEEE
Q ss_conf             078999887799899999733-97688886189976-----323456833--7870321----10289997679-18999
Q T0594             2 MSFEITEEYYVPPEVLFNAFT-DAYTLTRLSRGSLA-----EVDLKVGGK--FSLFSGS----ILGEFTEITKP-HKIVE   68 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t-~pe~~~~W~~~~~~-----~~d~~~Gg~--~~~~~g~----~~G~~~e~~p~-~~i~~   68 (140)
                      +++..+.+..+||+++|+|+. |...+.+|..+...     +.|-.+|..  +.+..+.    +.-++..+++. +.+.|
T Consensus         3 ~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~~~y   82 (147)
T d1txca1           3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDY   82 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEE
T ss_pred             EEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCEEEE
T ss_conf             69999986268989988755205310760046644461365389995649999986898615799999998067728999


Q ss_pred             EEECCCC-CCCCC-E-EEEEEEEECCCCCEEEEEEE
Q ss_conf             9813788-88985-0-89999863389946999997
Q T0594            69 KWKFRDW-NECDY-S-TVTVEFISVKENHTKLKLTH  101 (140)
Q Consensus        69 tw~~~~~-~~~~~-s-~v~~~~~~~~~g~T~l~l~~  101 (140)
                      +- .+++ ....+ + ..++.+.+..+|+|.++.+-
T Consensus        83 ~i-iEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~  117 (147)
T d1txca1          83 SI-VGGTGLPESLEKLSFETKVVAGSGGGSISKVTL  117 (147)
T ss_dssp             EE-EESTTSCTTEEEEEEEEEEEECSTTCEEEEEEE
T ss_pred             EE-ECCCCCCCCEEEEEEEEEEECCCCCCCEEEEEE
T ss_conf             99-806766631589999999963899985899999


No 22 
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}
Probab=96.09  E-value=0.047  Score=30.08  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=56.7

Q ss_pred             EEEEEEEEECCCHHHHHHHH-CCHHHH-HHHHCCCC------CCCCCCCCCE--EEECCC----EEEEEEEEEEC-CCEE
Q ss_conf             07899988779989999973-397688-88618997------6323456833--787032----11028999767-9189
Q T0594             2 MSFEITEEYYVPPEVLFNAF-TDAYTL-TRLSRGSL------AEVDLKVGGK--FSLFSG----SILGEFTEITK-PHKI   66 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~-t~pe~~-~~W~~~~~------~~~d~~~Gg~--~~~~~g----~~~G~~~e~~p-~~~i   66 (140)
                      .+++.+.+.++|++++|+|+ +|...+ .++ .|..      .+.|-.+|..  +.+..+    .+.-++.++++ ++.+
T Consensus         3 ~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~-~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~~   81 (159)
T d1e09a_           3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKI-APQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSY   81 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHH-CTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEE
T ss_pred             EEEEEEEEECCCHHHHHHHHHCCHHHCCCCC-CCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCEE
T ss_conf             6999877605898999998750810207120-776425898876899968299999848997279999999981532689


Q ss_pred             EEEEECCCCC-CCCC-E-EEEEEEEECCCCCEEEEEEEC
Q ss_conf             9998137888-8985-0-899998633899469999975
Q T0594            67 VEKWKFRDWN-ECDY-S-TVTVEFISVKENHTKLKLTHN  102 (140)
Q Consensus        67 ~~tw~~~~~~-~~~~-s-~v~~~~~~~~~g~T~l~l~~~  102 (140)
                      .|+- .+++. ...+ + ..++.+.+..+++|.+..+-.
T Consensus        82 ~y~v-iEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~e  119 (159)
T d1e09a_          82 SYTL-IEGDALGDTLEKISYETKLVASPSGGSIIKSTSH  119 (159)
T ss_dssp             EEEE-CCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEE
T ss_pred             EEEE-EECCCCCCCEEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf             9999-9455565637999999997169999808999999


No 23 
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=95.68  E-value=0.07  Score=29.02  Aligned_cols=98  Identities=14%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             EEEEEEEEECCCHHHHHHHH-CCHHHH-HHHHCCCC-----CCCCCCCCCE--EEECCCE----EEEEEEEEECC-CEEE
Q ss_conf             07899988779989999973-397688-88618997-----6323456833--7870321----10289997679-1899
Q T0594             2 MSFEITEEYYVPPEVLFNAF-TDAYTL-TRLSRGSL-----AEVDLKVGGK--FSLFSGS----ILGEFTEITKP-HKIV   67 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~-t~pe~~-~~W~~~~~-----~~~d~~~Gg~--~~~~~g~----~~G~~~e~~p~-~~i~   67 (140)
                      ++++.+.+.++||+++|+|+ .|...+ .++ .+..     .+.|-.+|..  +.+..+.    +.-++..+++. +.+.
T Consensus         3 ~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~~~   81 (157)
T d1xdfa1           3 FTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLRYN   81 (157)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEE
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCHHHCCCCC-HHHEECCEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEECHHCEEE
T ss_conf             6999998615898999987740600135003-322523224548999886999998379862799999998703044899


Q ss_pred             EEEECCCCC-CCCC-E-EEEEEEEECCCCCEEEEEEE
Q ss_conf             998137888-8985-0-89999863389946999997
Q T0594            68 EKWKFRDWN-ECDY-S-TVTVEFISVKENHTKLKLTH  101 (140)
Q Consensus        68 ~tw~~~~~~-~~~~-s-~v~~~~~~~~~g~T~l~l~~  101 (140)
                      |+- .+++. ...+ + ..++.+.+..+|+|.++.+-
T Consensus        82 y~v-iEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~  117 (157)
T d1xdfa1          82 YSI-VGGVGLPDTIEKISFETKLVEGANGGSIGKVTI  117 (157)
T ss_dssp             EEE-ESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEE-EECCCCCCCEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf             999-934324363899999999973899966999999


No 24 
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}
Probab=92.43  E-value=0.26  Score=25.54  Aligned_cols=97  Identities=9%  Similarity=0.023  Sum_probs=51.7

Q ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHHC-CCCCCC----CCCCCCEEEE--CCC--EEEEE---EEEEECCCEEEEEE
Q ss_conf             789998877998999997339768888618-997632----3456833787--032--11028---99976791899998
Q T0594             3 SFEITEEYYVPPEVLFNAFTDAYTLTRLSR-GSLAEV----DLKVGGKFSL--FSG--SILGE---FTEITKPHKIVEKW   70 (140)
Q Consensus         3 ~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~-~~~~~~----d~~~Gg~~~~--~~g--~~~G~---~~e~~p~~~i~~tw   70 (140)
                      ...+++.+++||++||+.+.|=+.-.+|.. |.....    +...+..+..  ..+  ...-+   .....++.+... +
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   81 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVRRDKDARSID-V   81 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEEEETTTCEEE-E
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEEEEEEEEEEEEEEEECCCCEEEE-E
T ss_conf             515899917999999999998876455433437408985146555412667999974003789999864037833999-9


Q ss_pred             ECCCCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf             13788889850899998633899469999975
Q T0594            71 KFRDWNECDYSTVTVEFISVKENHTKLKLTHN  102 (140)
Q Consensus        71 ~~~~~~~~~~s~v~~~~~~~~~g~T~l~l~~~  102 (140)
                      ...+.+- ..-...+.|.+ .+++|+|++..+
T Consensus        82 ~~~~g~f-~~l~~~W~f~~-~~~~T~V~~~l~  111 (148)
T d1t17a_          82 SLLYGPF-KRLNNGWRFMP-EGDATRVEFVIE  111 (148)
T ss_dssp             EESSTTS-SCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred             ECCCCHH-HHCCCCEEECC-CCCCEEEEEEEE
T ss_conf             6067166-52266146426-899569999999


No 25 
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=91.67  E-value=0.43  Score=24.26  Aligned_cols=99  Identities=13%  Similarity=0.201  Sum_probs=54.8

Q ss_pred             EEEEEEEEECCCHHHHHHHHC-CHHHH-HHHHCCCC-----CCCCCCCCCE--EEECCCE----EEEEEEEEECCCEEEE
Q ss_conf             078999887799899999733-97688-88618997-----6323456833--7870321----1028999767918999
Q T0594             2 MSFEITEEYYVPPEVLFNAFT-DAYTL-TRLSRGSL-----AEVDLKVGGK--FSLFSGS----ILGEFTEITKPHKIVE   68 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t-~pe~~-~~W~~~~~-----~~~d~~~Gg~--~~~~~g~----~~G~~~e~~p~~~i~~   68 (140)
                      ++++.+.+.++||+++|+|+. |-..+ .++. +..     .+.|-.+|..  +.+..+.    +.-++.++++.++ .+
T Consensus         3 ~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~-~~i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~-~~   80 (155)
T d1icxa_           3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANL-TY   80 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHS-TTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGT-EE
T ss_pred             EEEEEEEEECCCHHHHHHHHEECCCHHCHHHH-HHEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCC-EE
T ss_conf             69987577058989986632105111031441-01152257617886204999996258860799999998725213-89


Q ss_pred             EEEC-CCCC-CCCCE--EEEEEEEECCCCCEEEEEEEC
Q ss_conf             9813-7888-89850--899998633899469999975
Q T0594            69 KWKF-RDWN-ECDYS--TVTVEFISVKENHTKLKLTHN  102 (140)
Q Consensus        69 tw~~-~~~~-~~~~s--~v~~~~~~~~~g~T~l~l~~~  102 (140)
                      ++.. +++. .....  ..++.+.+..+|+|.++.+-.
T Consensus        81 ~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~e  118 (155)
T d1icxa_          81 NYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVK  118 (155)
T ss_dssp             EEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEE
T ss_pred             EEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEEEEEE
T ss_conf             99999654455637999999999628999728999999


No 26 
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=91.55  E-value=0.44  Score=24.18  Aligned_cols=77  Identities=9%  Similarity=0.143  Sum_probs=41.3

Q ss_pred             EEEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCEEEEEEECCCCC-CCCCE
Q ss_conf             78999887799899999733976888861899763234568337870321102899976791899998137888-89850
Q T0594             3 SFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKVGGKFSLFSGSILGEFTEITKPHKIVEKWKFRDWN-ECDYS   81 (140)
Q Consensus         3 ~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~~~~~~~d~~~Gg~~~~~~g~~~G~~~e~~p~~~i~~tw~~~~~~-~~~~s   81 (140)
                      .++.+..|+||++++|+++.+           ..+.+...         ...-++.+++..++ .++++.-+.+ ...+.
T Consensus         6 kl~~evei~~padK~~~~~~e-----------~~egd~~~---------~gKe~ve~iD~e~~-s~ty~iieGdl~~~~k   64 (120)
T d1vjha_           6 ALSVKFDVKCPADKFFSAFVE-----------DTNRPFEK---------NGKTEIEAVDLVKK-TMTIQMSGSEIQKYFK   64 (120)
T ss_dssp             EEEEEEEESSCHHHHHHHHHH-----------HTTSCSST---------TCEEEEEEEETTTT-EEEEEEECTTGGGTEE
T ss_pred             EEEEEEEECCCHHHHHHHHHH-----------HCCCCCCC---------CCCEEEEEECCCCC-EEEEEEECCCCCCCCC
T ss_conf             899998625997899887643-----------10488886---------33227788818875-8999971673322310


Q ss_pred             --EEEEEEEECCCC-CEEEEEE
Q ss_conf             --899998633899-4699999
Q T0594            82 --TVTVEFISVKEN-HTKLKLT  100 (140)
Q Consensus        82 --~v~~~~~~~~~g-~T~l~l~  100 (140)
                        +.++.+.+..+| +|.+..+
T Consensus        65 s~~~ti~v~p~~~G~gs~v~Wt   86 (120)
T d1vjha_          65 TLKGSIAVTPIGVGDGSHVVWT   86 (120)
T ss_dssp             EEEEEEEEEECSSSSCEEEEEE
T ss_pred             CEEEEEEEEECCCCCEEEEEEE
T ss_conf             0478999984699984689998


No 27 
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=91.44  E-value=0.45  Score=24.11  Aligned_cols=120  Identities=9%  Similarity=-0.001  Sum_probs=68.9

Q ss_pred             CHHHHHHHHCCHHHHHHHHCCCC--CCCCCCCCCEEE--E-CCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf             98999997339768888618997--632345683378--7-032110289997679189999813788889850899998
Q T0594            13 PPEVLFNAFTDAYTLTRLSRGSL--AEVDLKVGGKFS--L-FSGSILGEFTEITKPHKIVEKWKFRDWNECDYSTVTVEF   87 (140)
Q Consensus        13 ~~e~Vw~A~t~pe~~~~W~~~~~--~~~d~~~Gg~~~--~-~~g~~~G~~~e~~p~~~i~~tw~~~~~~~~~~s~v~~~~   87 (140)
                      +.++||+-|.---.-.+=|.+..  ++.--+.++.+.  + +++..--..+.+.|+.++.|++......  ..+.+++.+
T Consensus        21 Tr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~~~~Rel~fg~~~v~e~Vtl~~~~~v~f~~~a~~~~--~g~~l~~~I   98 (151)
T d2ffsa1          21 DRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLYLPGLVVEDEVVLKAPDSAHYSIKPSAEV--AGGSLDMTI   98 (151)
T ss_dssp             CHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEEEEETTEEEEEEEEEETTTEEEEEECCCSSS--BEEEEEEEE
T ss_pred             CHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCCEEEEEEEECCCEEEEEEEECCCCEEEEECCCCCCC--CCCEEEEEE
T ss_conf             899999788981568756501033699998039819999998796568889974884899980465677--885799998


Q ss_pred             EECCCCCEEEEEEE-CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             63389946999997-5877553321013453664155889999889851
Q T0594            88 ISVKENHTKLKLTH-NNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  135 (140)
Q Consensus        88 ~~~~~g~T~l~l~~-~g~~~~~~~~~~~~~e~~~~GW~~~~~~~lk~~~  135 (140)
                      .++.+|.-.|+++- ...|+..... ....+..+..|.+.-.+.++.+.
T Consensus        99 eep~~g~L~lrf~Ye~~~p~~~~~~-~~~~e~~ksaY~~ad~dTvr~IR  146 (151)
T d2ffsa1          99 EEPEPGSLFVRFAYCTRYLQPLGDE-LPYDAFVKQAYIAMDVETIATIR  146 (151)
T ss_dssp             EEEETTEEEEEEEEEEECSCC--CC-CCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEEEECCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0289980999999974899988433-56889999999988599999999


No 28 
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Probab=71.09  E-value=2.7  Score=19.40  Aligned_cols=31  Identities=3%  Similarity=-0.120  Sum_probs=27.8

Q ss_pred             EEEEEEEEECCCHHHHHHHHCCHHHHHHHHC
Q ss_conf             0789998877998999997339768888618
Q T0594             2 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSR   32 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~A~t~pe~~~~W~~   32 (140)
                      ..+..+..|++|+++|++.+.|++...+|-.
T Consensus        44 ~~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~   74 (199)
T d1jssa_          44 YLYKAQGVMDDVVNNVIDHIRPGPWRLDWDR   74 (199)
T ss_dssp             EEEEEEEEESSCHHHHHHHHSSSTTHHHHCS
T ss_pred             EEEEEEEEECCCHHHHHHHHHCHHHHHHCCC
T ss_conf             7999999967999999998839555530055


No 29 
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.34  E-value=6.5  Score=17.12  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=25.7

Q ss_pred             EEEEEEEEECCCHHHHHH-HHCCHHHHHHHHC
Q ss_conf             078999887799899999-7339768888618
Q T0594             2 MSFEITEEYYVPPEVLFN-AFTDAYTLTRLSR   32 (140)
Q Consensus         2 ~~i~i~~~i~a~~e~Vw~-A~t~pe~~~~W~~   32 (140)
                      .-+..+..+++|+++|++ .+.|++...+|..
T Consensus        52 ~~~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~   83 (214)
T d1em2a_          52 KTFILKTFLPCPAELVYQEVILQPERMVLWNK   83 (214)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTTCHHHHTTTCT
T ss_pred             EEEEEEEEEECCHHHHHHHHHHCHHHHHHHHH
T ss_conf             79999999918999999999859587988887


Done!