Query T0595 HR4403E, , 123 residues Match_columns 123 No_of_seqs 138 out of 17387 Neff 9.3 Searched_HMMs 22458 Date Mon Jul 5 09:07:34 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0595.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0595.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2dba_A Smooth muscle cell asso 99.9 1.2E-23 5.5E-28 141.3 11.7 118 2-119 24-144 (148) 2 1a17_A Serine/threonine protei 99.9 2.6E-23 1.1E-27 139.7 12.8 114 5-118 12-125 (166) 3 2vsy_A XCC0866; transferase, g 99.9 3.2E-23 1.4E-27 139.1 12.9 120 1-120 18-137 (568) 4 2vyi_A SGTA protein; chaperone 99.9 3.2E-23 1.4E-27 139.2 12.5 120 2-121 8-127 (131) 5 1elw_A TPR1-domain of HOP; HOP 99.9 3.2E-23 1.4E-27 139.2 12.2 116 4-119 2-117 (118) 6 1na0_A Designed protein CTPR3; 99.9 1.1E-22 5E-27 136.3 12.8 122 1-122 3-125 (125) 7 1wao_1 Serine/threonine protei 99.9 4.6E-24 2E-28 143.6 5.0 115 4-118 4-118 (477) 8 2c2l_A CHIP, carboxy terminus 99.9 6.5E-23 2.9E-27 137.6 7.3 106 5-110 3-108 (281) 9 1p5q_A FKBP52, FK506-binding p 99.9 9.7E-22 4.3E-26 131.4 12.6 116 5-120 146-276 (336) 10 1kt0_A FKBP51, 51 kDa FK506-bi 99.9 4E-22 1.8E-26 133.5 10.2 119 2-120 264-397 (457) 11 2vgx_A Chaperone SYCD; alterna 99.9 1E-21 4.5E-26 131.3 12.1 117 1-117 16-132 (148) 12 2xcb_A PCRH, regulatory protei 99.9 8.5E-22 3.8E-26 131.7 11.1 117 1-117 13-129 (142) 13 2h6f_A Protein farnesyltransfe 99.9 9.8E-22 4.4E-26 131.4 11.1 119 1-119 126-245 (382) 14 1ihg_A Cyclophilin 40; ppiase 99.9 1.6E-21 7.3E-26 130.2 11.9 118 4-121 221-354 (370) 15 2fbn_A 70 kDa peptidylprolyl i 99.9 3.4E-21 1.5E-25 128.6 13.1 116 5-120 37-168 (198) 16 3ieg_A DNAJ homolog subfamily 99.9 2.8E-21 1.3E-25 129.0 12.1 114 5-118 2-115 (359) 17 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.8E-21 2.2E-25 127.8 12.5 115 2-116 39-153 (275) 18 1w3b_A UDP-N-acetylglucosamine 99.8 1.1E-20 4.9E-25 125.9 12.1 123 1-123 266-388 (388) 19 2if4_A ATFKBP42; FKBP-like, al 99.8 1.3E-21 5.9E-26 130.7 5.7 117 4-120 177-310 (338) 20 2ho1_A Type 4 fimbrial biogene 99.8 4.5E-20 2E-24 122.7 12.6 123 1-123 66-190 (252) 21 3gyz_A Chaperone protein IPGC; 99.8 4.1E-20 1.8E-24 122.9 12.2 111 1-111 31-141 (151) 22 2h6f_A Protein farnesyltransfe 99.8 2.7E-20 1.2E-24 123.8 11.3 121 1-121 92-213 (382) 23 3fp2_A TPR repeat-containing p 99.8 2E-20 8.8E-25 124.6 10.4 101 2-102 306-406 (537) 24 3cv0_A Peroxisome targeting si 99.8 5.9E-20 2.6E-24 122.1 11.9 108 1-108 167-274 (327) 25 2gw1_A Mitochondrial precursor 99.8 7.4E-21 3.3E-25 126.8 6.1 93 5-98 5-97 (514) 26 1hxi_A PEX5, peroxisome target 99.8 1.2E-20 5.4E-25 125.7 7.2 109 2-110 12-121 (121) 27 3fp2_A TPR repeat-containing p 99.8 8.2E-21 3.6E-25 126.6 6.1 119 2-120 340-474 (537) 28 2gw1_A Mitochondrial precursor 99.8 5.2E-20 2.3E-24 122.3 10.0 109 1-109 299-407 (514) 29 1fch_A Peroxisomal targeting s 99.8 7.2E-20 3.2E-24 121.6 10.7 109 2-110 211-321 (368) 30 2fo7_A Synthetic consensus TPR 99.8 1.6E-19 7.1E-24 119.8 12.0 117 6-122 1-117 (136) 31 2vq2_A PILW, putative fimbrial 99.8 2.9E-19 1.3E-23 118.5 12.3 122 1-122 37-161 (225) 32 1hh8_A P67PHOX, NCF-2, neutrop 99.8 1.4E-19 6.1E-24 120.1 10.6 117 1-117 32-166 (213) 33 2ho1_A Type 4 fimbrial biogene 99.8 1.6E-19 7E-24 119.8 10.4 119 4-122 35-155 (252) 34 2vsy_A XCC0866; transferase, g 99.8 8.9E-20 3.9E-24 121.1 8.5 104 19-122 2-105 (568) 35 1elr_A TPR2A-domain of HOP; HO 99.8 8E-19 3.5E-23 116.1 12.8 115 4-119 2-123 (131) 36 1hh8_A P67PHOX, NCF-2, neutrop 99.8 1E-18 4.5E-23 115.6 12.4 115 5-122 5-135 (213) 37 2fo7_A Synthetic consensus TPR 99.8 5.9E-19 2.6E-23 116.8 9.9 107 1-107 30-136 (136) 38 1fch_A Peroxisomal targeting s 99.8 4.3E-18 1.9E-22 112.3 13.2 74 46-119 223-296 (368) 39 2pl2_A Hypothetical conserved 99.8 3.4E-18 1.5E-22 112.8 12.0 111 10-120 9-130 (217) 40 3dss_A Geranylgeranyl transfer 99.8 2.9E-18 1.3E-22 113.2 11.4 122 1-122 59-193 (331) 41 2q7f_A YRRB protein; TPR, prot 99.8 7.3E-18 3.3E-22 111.1 13.2 73 1-73 52-124 (243) 42 2q7f_A YRRB protein; TPR, prot 99.8 2E-18 9E-23 114.0 10.2 114 2-115 121-234 (243) 43 1w3b_A UDP-N-acetylglucosamine 99.8 3.8E-18 1.7E-22 112.6 11.3 120 2-121 233-352 (388) 44 3cv0_A Peroxisome targeting si 99.8 7.1E-18 3.1E-22 111.2 12.5 95 11-105 26-120 (327) 45 2vq2_A PILW, putative fimbrial 99.8 6.4E-18 2.8E-22 111.4 12.2 121 2-122 4-127 (225) 46 3hym_B Cell division cycle pro 99.8 1.2E-17 5.5E-22 109.9 12.7 118 2-119 189-315 (330) 47 3ieg_A DNAJ homolog subfamily 99.8 1.3E-17 5.6E-22 109.9 12.5 112 9-120 237-352 (359) 48 1zu2_A Mitochondrial import re 99.7 1.2E-18 5.4E-23 115.2 6.6 110 11-120 7-137 (158) 49 1na3_A Designed protein CTPR2; 99.7 2.3E-18 1E-22 113.7 7.8 88 1-88 3-91 (91) 50 3hym_B Cell division cycle pro 99.7 9.5E-18 4.2E-22 110.5 10.6 120 2-121 86-206 (330) 51 2pl2_A Hypothetical conserved 99.7 3.9E-17 1.7E-21 107.3 13.1 121 1-122 34-199 (217) 52 3dra_A Protein farnesyltransfe 99.7 2E-17 8.9E-22 108.8 10.2 119 1-119 62-191 (306) 53 2hr2_A Hypothetical protein; N 99.7 7.2E-18 3.2E-22 111.1 6.8 106 4-109 7-137 (159) 54 3dss_A Geranylgeranyl transfer 99.7 3E-17 1.3E-21 107.9 9.9 121 1-121 139-322 (331) 55 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.4E-17 2.8E-21 106.2 11.3 110 1-110 72-251 (275) 56 1nzn_A CGI-135 protein, fissio 99.7 8.7E-17 3.9E-21 105.5 10.8 111 10-120 5-120 (126) 57 2kck_A TPR repeat; tetratricop 99.7 1.1E-17 4.7E-22 110.3 6.0 100 1-100 1-103 (112) 58 3dra_A Protein farnesyltransfe 99.7 9.7E-17 4.3E-21 105.2 9.9 119 2-120 29-156 (306) 59 3ffl_A Anaphase-promoting comp 99.7 3.6E-17 1.6E-21 107.5 7.3 107 3-119 60-166 (167) 60 2e2e_A Formate-dependent nitri 99.7 2E-16 9E-21 103.6 10.8 116 1-116 39-157 (177) 61 3k9i_A BH0479 protein; putativ 99.7 3.5E-17 1.6E-21 107.5 5.9 95 18-112 2-99 (117) 62 2r5s_A Uncharacterized protein 99.7 1.2E-16 5.4E-21 104.7 8.4 119 2-120 36-156 (176) 63 2r5s_A Uncharacterized protein 99.7 2.9E-16 1.3E-20 102.8 9.6 116 7-122 7-122 (176) 64 1pc2_A Mitochondria fission pr 99.7 8.9E-17 4E-21 105.4 6.1 108 13-120 5-117 (152) 65 1na3_A Designed protein CTPR2; 99.6 2.8E-16 1.2E-20 102.8 8.1 89 34-122 2-91 (91) 66 2kat_A Uncharacterized protein 99.6 2.9E-16 1.3E-20 102.7 8.0 95 23-117 2-98 (115) 67 1wao_1 Serine/threonine protei 99.6 7.5E-17 3.4E-21 105.8 4.4 106 1-106 35-142 (477) 68 1ihg_A Cyclophilin 40; ppiase 99.6 1.6E-16 7E-21 104.1 5.7 99 1-99 268-366 (370) 69 1a17_A Serine/threonine protei 99.6 7E-16 3.1E-20 100.7 8.8 100 1-100 42-143 (166) 70 1ya0_A SMG-7 transcript varian 99.6 2.5E-16 1.1E-20 103.0 5.9 119 1-121 115-233 (497) 71 3edt_B KLC 2, kinesin light ch 99.6 4.3E-15 1.9E-19 96.6 9.7 121 2-122 39-183 (283) 72 2vgx_A Chaperone SYCD; alterna 99.6 8.1E-16 3.6E-20 100.4 5.8 104 20-123 1-104 (148) 73 3ma5_A Tetratricopeptide repea 99.6 2.1E-15 9.6E-20 98.2 6.9 87 2-88 3-91 (100) 74 2vyi_A SGTA protein; chaperone 99.6 4.9E-15 2.2E-19 96.3 7.4 89 1-89 41-129 (131) 75 2kat_A Uncharacterized protein 99.6 7E-15 3.1E-19 95.5 7.9 94 1-95 14-109 (115) 76 1na0_A Designed protein CTPR3; 99.5 8.7E-15 3.9E-19 95.0 7.3 87 2-88 39-125 (125) 77 3ma5_A Tetratricopeptide repea 99.5 6.2E-15 2.8E-19 95.8 6.3 86 35-120 2-89 (100) 78 2kck_A TPR repeat; tetratricop 99.5 2.7E-14 1.2E-18 92.4 7.9 86 35-120 1-88 (112) 79 2c2l_A CHIP, carboxy terminus 99.5 2.1E-14 9.1E-19 93.0 7.0 96 1-96 33-128 (281) 80 2xcb_A PCRH, regulatory protei 99.5 1.9E-14 8.4E-19 93.2 6.7 94 29-122 7-100 (142) 81 2ooe_A Cleavage stimulation fa 99.5 2.6E-13 1.2E-17 87.2 12.5 115 4-118 319-435 (530) 82 1elw_A TPR1-domain of HOP; HOP 99.5 2.7E-14 1.2E-18 92.4 6.8 84 1-84 33-116 (118) 83 1zu2_A Mitochondrial import re 99.5 3.2E-14 1.4E-18 92.0 6.1 92 1-92 31-143 (158) 84 3gyz_A Chaperone protein IPGC; 99.5 4.5E-14 2E-18 91.2 6.3 96 28-123 24-119 (151) 85 2fbn_A 70 kDa peptidylprolyl i 99.5 4.8E-14 2.1E-18 91.1 6.3 102 4-105 86-188 (198) 86 2ooe_A Cleavage stimulation fa 99.5 4.1E-13 1.8E-17 86.2 11.0 114 3-116 353-471 (530) 87 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.2E-13 5.6E-18 88.9 7.2 90 5-94 316-405 (457) 88 1p5q_A FKBP52, FK506-binding p 99.4 2.1E-13 9.5E-18 87.7 7.5 90 5-94 195-284 (336) 89 1hxi_A PEX5, peroxisome target 99.4 9.5E-14 4.3E-18 89.5 5.7 84 39-122 16-99 (121) 90 2if4_A ATFKBP42; FKBP-like, al 99.4 7.2E-14 3.2E-18 90.2 5.1 97 6-102 230-327 (338) 91 3edt_B KLC 2, kinesin light ch 99.4 5.6E-13 2.5E-17 85.5 9.2 102 3-104 82-199 (283) 92 1qqe_A Vesicular transport pro 99.4 6.7E-13 3E-17 85.1 9.2 102 6-107 77-191 (292) 93 2v5f_A Prolyl 4-hydroxylase su 99.4 1.2E-13 5.5E-18 88.9 5.3 91 5-95 4-101 (104) 94 2kc7_A BFR218_protein; tetratr 99.4 3E-13 1.3E-17 87.0 7.2 71 11-81 5-76 (99) 95 1b89_A Protein (clathrin heavy 99.4 2.4E-13 1.1E-17 87.5 5.4 106 3-117 145-250 (449) 96 3k9i_A BH0479 protein; putativ 99.4 3.4E-13 1.5E-17 86.6 5.8 75 2-76 23-97 (117) 97 2e2e_A Formate-dependent nitri 99.4 3.7E-13 1.7E-17 86.4 5.9 109 15-123 19-130 (177) 98 2dba_A Smooth muscle cell asso 99.4 8E-13 3.6E-17 84.7 7.4 71 6-76 65-135 (148) 99 1y8m_A FIS1; mitochondria, unk 99.4 2.4E-12 1.1E-16 82.2 9.8 99 22-120 18-123 (144) 100 1qqe_A Vesicular transport pro 99.4 7.5E-12 3.3E-16 79.6 11.6 101 6-106 37-150 (292) 101 1b89_A Protein (clathrin heavy 99.4 3E-12 1.4E-16 81.7 9.6 102 1-103 56-177 (449) 102 2uy1_A Cleavage stimulation fa 99.4 1.5E-12 6.7E-17 83.3 7.5 112 1-112 9-127 (493) 103 1ya0_A SMG-7 transcript varian 99.3 1.5E-12 6.9E-17 83.2 6.8 86 3-88 149-234 (497) 104 3gw4_A Uncharacterized protein 99.3 1E-11 4.6E-16 78.9 10.5 106 1-106 21-179 (203) 105 2kc7_A BFR218_protein; tetratr 99.3 3.3E-12 1.5E-16 81.5 7.4 68 45-112 5-73 (99) 106 1y8m_A FIS1; mitochondria, unk 99.3 1.3E-12 6E-17 83.5 5.4 83 6-88 39-125 (144) 107 3gw4_A Uncharacterized protein 99.3 3.7E-12 1.6E-16 81.2 6.9 91 16-106 2-98 (203) 108 1nzn_A CGI-135 protein, fissio 99.3 1.7E-12 7.7E-17 83.0 5.0 89 1-89 30-123 (126) 109 2ond_A Cleavage stimulation fa 99.3 6.8E-11 3E-15 74.6 12.4 119 2-120 95-215 (308) 110 3ffl_A Anaphase-promoting comp 99.2 6.8E-12 3E-16 79.8 6.0 106 9-123 23-137 (167) 111 1elr_A TPR2A-domain of HOP; HO 99.2 4.4E-12 2E-16 80.8 4.2 79 40-118 4-82 (131) 112 2uy1_A Cleavage stimulation fa 99.2 1.5E-10 6.8E-15 72.7 10.9 94 7-100 287-380 (493) 113 2pqr_A Mitochondria fission 1 99.2 1E-11 4.5E-16 78.9 4.9 98 22-119 18-122 (129) 114 2pqr_A Mitochondria fission 1 99.2 2.6E-11 1.2E-15 76.8 6.7 85 5-89 38-126 (129) 115 2v5f_A Prolyl 4-hydroxylase su 99.2 5.2E-11 2.3E-15 75.2 8.1 83 39-121 4-93 (104) 116 1pc2_A Mitochondria fission pr 99.2 1.7E-11 7.4E-16 77.8 5.3 86 1-86 27-117 (152) 117 3bee_A Putative YFRE protein; 99.2 3.3E-11 1.5E-15 76.2 6.5 74 2-75 2-78 (93) 118 3bee_A Putative YFRE protein; 99.1 7.9E-11 3.5E-15 74.3 7.0 83 35-117 1-86 (93) 119 2ifu_A Gamma-SNAP; membrane fu 99.1 3.7E-10 1.6E-14 70.8 9.6 93 11-103 120-224 (307) 120 2ond_A Cleavage stimulation fa 99.1 1.1E-09 4.7E-14 68.3 11.6 115 2-116 129-249 (308) 121 2ifu_A Gamma-SNAP; membrane fu 99.1 4.1E-10 1.8E-14 70.5 9.1 98 6-103 36-144 (307) 122 1zbp_A Hypothetical protein VP 99.1 8.4E-10 3.7E-14 68.9 9.9 110 1-110 26-136 (273) 123 1zbp_A Hypothetical protein VP 99.0 6.7E-11 3E-15 74.6 3.2 104 12-115 3-107 (273) 124 2hr2_A Hypothetical protein; N 99.0 3E-10 1.3E-14 71.2 5.7 82 4-85 55-147 (159) 125 3mek_A SET and MYND domain-con 98.8 2.2E-07 1E-11 56.2 12.8 113 7-119 288-421 (429) 126 1ouv_A Conserved hypothetical 98.5 1.5E-06 6.7E-11 51.8 11.9 108 4-117 4-119 (273) 127 2qfc_A PLCR protein; TPR, HTH, 98.3 4.9E-06 2.2E-10 49.2 9.3 99 5-103 154-266 (293) 128 1dce_A Protein (RAB geranylger 98.2 6.8E-06 3E-10 48.4 9.5 93 22-114 125-232 (567) 129 1dce_A Protein (RAB geranylger 98.2 3.7E-05 1.6E-09 44.6 11.8 118 1-118 58-188 (567) 130 3e4b_A ALGK; tetratricopeptide 98.1 1.5E-05 6.7E-10 46.6 9.3 91 20-117 265-363 (452) 131 1ouv_A Conserved hypothetical 98.1 9.9E-06 4.4E-10 47.5 7.8 108 5-118 145-264 (273) 132 3e4b_A ALGK; tetratricopeptide 98.1 4.4E-05 1.9E-09 44.2 10.4 105 5-116 282-398 (452) 133 2ff4_A Probable regulatory pro 98.0 5E-05 2.2E-09 43.9 9.9 110 8-118 117-255 (388) 134 1klx_A Cysteine rich protein B 98.0 4.3E-05 1.9E-09 44.2 8.7 93 17-115 36-136 (138) 135 3mek_A SET and MYND domain-con 97.9 2.1E-05 9.5E-10 45.8 6.7 70 2-71 325-402 (429) 136 2pzi_A Probable serine/threoni 97.7 0.00021 9.1E-09 40.6 8.8 92 10-102 471-562 (681) 137 2pzi_A Probable serine/threoni 97.6 0.00039 1.8E-08 39.2 9.0 114 7-121 434-547 (681) 138 2qfc_A PLCR protein; TPR, HTH, 97.6 0.00091 4.1E-08 37.2 10.6 115 7-121 116-249 (293) 139 1klx_A Cysteine rich protein B 97.6 0.00033 1.5E-08 39.5 8.3 93 19-119 8-104 (138) 140 3esl_A Checkpoint serine/threo 96.8 0.0074 3.3E-07 32.5 8.7 98 19-117 50-159 (202) 141 2ff4_A Probable regulatory pro 96.7 0.0028 1.3E-07 34.7 6.1 77 46-122 121-219 (388) 142 3kae_A CDC27, possible protein 96.4 0.028 1.2E-06 29.5 9.4 97 10-111 37-151 (242) 143 2wvi_A Mitotic checkpoint seri 96.2 0.029 1.3E-06 29.3 8.6 99 19-117 36-140 (164) 144 1xi4_A Clathrin heavy chain; a 95.8 0.06 2.7E-06 27.7 9.4 100 10-117 1199-1323(1630) 145 3esl_A Checkpoint serine/threo 95.4 0.087 3.9E-06 26.9 9.2 50 72-122 78-129 (202) 146 3kae_A CDC27, possible protein 94.9 0.13 5.6E-06 26.0 10.4 106 2-107 58-241 (242) 147 2cfu_A SDSA1; SDS-hydrolase, l 91.4 0.38 1.7E-05 23.5 5.8 44 77-120 452-495 (658) 148 2v1t_A Mitochondrial import re 88.7 0.45 2E-05 23.1 4.4 35 9-43 20-54 (73) 149 2crb_A Nuclear receptor bindin 87.8 0.57 2.5E-05 22.6 4.4 27 8-34 17-43 (97) 150 1wfd_A Hypothetical protein 15 87.4 0.62 2.8E-05 22.4 4.4 31 5-35 14-44 (93) 151 1om2_A Protein (mitochondrial 85.6 0.6 2.7E-05 22.5 3.6 35 9-43 23-57 (95) 152 2v6y_A AAA family ATPase, P60 85.6 0.88 3.9E-05 21.6 4.4 31 5-35 10-40 (83) 153 2cpt_A SKD1 protein, vacuolar 85.4 0.9 4E-05 21.6 4.4 31 5-35 17-47 (117) 154 2v6x_A Vacuolar protein sortin 84.6 1 4.7E-05 21.2 4.4 31 5-35 12-42 (85) 155 2w2u_A Hypothetical P60 katani 84.3 1.5 6.9E-05 20.3 5.8 30 5-34 18-47 (83) 156 2dl1_A Spartin; SPG20, MIT, st 75.7 2.8 0.00012 19.0 4.1 44 18-69 15-58 (116) 157 3kez_A Putative sugar binding 71.4 3.3 0.00015 18.6 3.7 30 74-103 338-367 (461) 158 2rpa_A Katanin P60 ATPase-cont 66.1 5.2 0.00023 17.6 3.9 28 8-35 14-41 (78) 159 3lew_A SUSD-like carbohydrate 62.3 6.2 0.00028 17.2 3.7 29 76-104 205-233 (495) 160 3jq1_A SUSD superfamily protei 52.9 9.1 0.00041 16.3 4.1 30 74-103 361-390 (481) 161 3lpz_A GET4 (YOR164C homolog); 48.7 11 0.00048 15.9 9.2 24 9-32 38-61 (336) 162 2vkj_A TM1634; membrane protei 46.3 12 0.00052 15.7 4.7 39 71-110 50-88 (106) 163 2ijq_A Hypothetical protein; s 46.0 12 0.00053 15.7 6.4 71 8-78 34-113 (161) 164 3l22_A SUSD superfamily protei 45.7 5.8 0.00026 17.3 1.2 31 4-34 199-229 (441) 165 1qsa_A Protein (soluble lytic 44.4 13 0.00056 15.6 7.8 23 78-100 323-345 (618) 166 3hdx_A SUSD homolog, SUSD supe 42.0 14 0.00061 15.4 4.3 29 74-102 364-392 (478) 167 1rw6_A Amyloid beta A4 protein 38.6 16 0.0007 15.1 3.9 17 23-39 110-126 (210) 168 1wy6_A Hypothetical protein ST 32.7 20 0.00088 14.5 4.7 93 12-104 13-155 (172) 169 2wpv_A GET4, UPF0363 protein Y 29.0 23 0.001 14.2 9.1 25 8-32 35-59 (312) 170 2oo2_A Hypothetical protein AF 27.8 24 0.0011 14.1 4.1 28 73-100 34-61 (86) 171 2cwy_A Hypothetical protein TT 27.7 24 0.0011 14.1 4.7 62 10-71 5-70 (94) 172 3eab_A Spastin; spastin, MIT, 26.0 26 0.0012 13.9 3.1 46 19-69 10-55 (89) 173 2pmr_A Uncharacterized protein 23.9 29 0.0013 13.7 4.1 28 74-101 39-66 (87) 174 3i4g_A SUSD-like carbohydrate 22.3 31 0.0014 13.5 4.8 28 76-103 200-227 (528) No 1 >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.90 E-value=1.2e-23 Score=141.34 Aligned_cols=118 Identities=26% Similarity=0.365 Sum_probs=111.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112899999999998707888999999988531665---3023344455653321111000011100000000001133 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 78 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 78 (123) +|+.+..++.+|+.+|+.|+|++|+.+|+++|.++|. ...+|.++|.|++++|++++|+.+++++|+++|.++.+|+ T Consensus 24 ~~~~~~~l~~~G~~~~~~~~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 103 (148) T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148) T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 88899999999999999689999999999998744230678999836433332112221100013444410203547999 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 46899987268889999999999748996888999999997 Q T0595 79 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 79 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) ++|.+++.+|++++|+.+|+++++++|++..+...+.++.. T Consensus 104 ~~a~~~~~~~~~~~A~~~~~kal~l~p~~~~~~~~l~~l~~ 144 (148) T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148) T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 88999999378599999999999858898999999997428 No 2 >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Probab=99.90 E-value=2.6e-23 Score=139.67 Aligned_cols=114 Identities=34% Similarity=0.568 Sum_probs=110.1 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) .|..++.+|+.+++.|+|++|+.+|+++|+++|+++.+|.++|.|++.+|++++|+.+|+++++++|.++.+|+++|.++ T Consensus 12 ~a~~l~~~G~~~~~~~~y~~Ai~~y~~ai~~~p~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~l~~~~~~a~~~lg~~~ 91 (166) T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99999999999999589999999999999829988899997738888714737799999999972755779899999999 Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 8726888999999999974899688899999999 Q T0595 85 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 85 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) ..+|++++|+.+|+++++++|++..+...+..+. T Consensus 92 ~~l~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 125 (166) T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166) T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 9978999999999999976969999999999999 No 3 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Probab=99.90 E-value=3.2e-23 Score=139.15 Aligned_cols=120 Identities=11% Similarity=-0.036 Sum_probs=115.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++.+|.++|..+..+|++++|+.+|+++|+++|+++.+|.++|.++..+|++++|+..++++++++|+++.+|+++ T Consensus 18 ~~P~~~~a~~~Lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 97 (568) T 2vsy_A 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97 (568) T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 68999999999999999869999999999999984999999999999999984999999999999997299999999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 8999872688899999999997489968889999999975 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) |.++..+|++++|+..|+++++++|++..+...+..+... T Consensus 98 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l~~~~~~ 137 (568) T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 9999986980245789999973088630466755425665 No 4 >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Probab=99.90 E-value=3.2e-23 Score=139.16 Aligned_cols=120 Identities=31% Similarity=0.510 Sum_probs=115.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) ++..+..++.+|+.+++.|+|++|+.+|+++|+++|+++.+|.++|.|+..+|++++|+.++.+++.++|+++.+|+.+| T Consensus 8 ~~~~a~~l~~~G~~~~~~~~y~~Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~g 87 (131) T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131) T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 69999999999999998689999999999998749862999999858898816636789989999998313699999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 9998726888999999999974899688899999999754 Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) .++..+|++++|+.+|+++++++|++..++..++.+.... T Consensus 88 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 127 (131) T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9987757999999999999976989899999999999987 No 5 >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Probab=99.90 E-value=3.2e-23 Score=139.19 Aligned_cols=116 Identities=35% Similarity=0.568 Sum_probs=111.6 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12899999999998707888999999988531665302334445565332111100001110000000000113346899 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 83 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 83 (123) +.+..++.+|+.++..|+|++|+.+|+++|+.+|+++.+|.++|.|++.+|++++|+.++.++++++|+++.+|+++|.+ T Consensus 2 ~~~~~l~~~G~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 81 (118) T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118) T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 59999999999999869999999999999986899899999999999984881766899999998798979999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 987268889999999999748996888999999997 Q T0595 84 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 84 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) +..+|++++|+++|+++++++|+++.+...++++.. T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 117 (118) T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118) T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 999499999999999999739898999999995729 No 6 >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 Probab=99.89 E-value=1.1e-22 Score=136.34 Aligned_cols=122 Identities=28% Similarity=0.451 Sum_probs=117.9 Q ss_pred CCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112-89999999999870788899999998853166530233444556533211110000111000000000011334 Q T0595 1 MNPDL-ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 1 lnP~~-a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) |||++ +++|+.+|..++.+|+|++|+..|++++...|.+..+|..++.++...+++++|+.+++++++++|+++.+|++ T Consensus 3 ~~~~~~~~~y~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~ 82 (125) T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125) T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99956099999999999996899999999999987695669999999999998288225799999999868998699997 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 6899987268889999999999748996888999999997542 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~ 122 (123) +|.++..+|++++|++.|+++++++|+++.++..++.++..++ T Consensus 83 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~G 125 (125) T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC T ss_pred HCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC T ss_conf 6747660273999999999999868897999999999999774 No 7 >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Probab=99.89 E-value=4.6e-24 Score=143.61 Aligned_cols=115 Identities=34% Similarity=0.564 Sum_probs=109.8 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12899999999998707888999999988531665302334445565332111100001110000000000113346899 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 83 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 83 (123) +.|..++.+|+.++++|+|++|+..|+++|+++|+++.+|.++|.|+.+++++++|+.+++++++++|+++.+|+++|.+ T Consensus 4 ~kAe~l~~~Gn~~~~~g~y~~Ai~~y~kal~~~p~~~~~~~~lg~~~~~l~~~~~Ai~~~~kal~l~p~~~~a~~~lg~~ 83 (477) T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477) T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999999999999858999999999999980999899999999999983999999999999998589989999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 98726888999999999974899688899999999 Q T0595 84 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 84 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) +..+|++++|++.|+++++++|++.+++..++++. T Consensus 84 ~~~lg~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 118 (477) T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477) T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99869999999999999984999799999999999 No 8 >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Probab=99.88 E-value=6.5e-23 Score=137.55 Aligned_cols=106 Identities=33% Similarity=0.475 Sum_probs=101.8 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) .|..++..|+.+++.|+|++|+.+|++||+++|+++.+|.+||.||..+|++++|+.+|.++|+++|.++.+|+++|.++ T Consensus 3 ~a~~l~~~G~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~n~g~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 82 (281) T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 79999999999998599999999999999838998999999999999848828899999999983986779998899999 Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 87268889999999999748996888 Q T0595 85 EAMKDYTKAMDVYQKALDLDSSCKEA 110 (123) Q Consensus 85 ~~~~~~~~A~~~~~~al~l~p~~~~a 110 (123) ..+|++++|+..|++++.++|++..+ T Consensus 83 ~~~~~~~~A~~~~~~a~~l~~~~~~~ 108 (281) T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLN 108 (281) T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 97145678789998765318421899 No 9 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Probab=99.87 E-value=9.7e-22 Score=131.41 Aligned_cols=116 Identities=27% Similarity=0.403 Sum_probs=107.1 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653---------------023344455653321111000011100000 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL 69 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 69 (123) .+..++.+|+.+|+.|+|++|+.+|++||...|.. ..+|.++|.|++++++|++|+.+|+++|++ T Consensus 146 ~a~~~ke~Gn~~fk~g~y~~Ai~~Y~kAl~~l~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~~~~Ai~~~~kaL~l 225 (336) T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336) T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999999998599999999999999975431000236676525577999989999999839999999999999986 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 000001133468999872688899999999997489968889999999975 Q T0595 70 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 70 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) +|.++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..|... T Consensus 226 dp~n~ka~~~~g~a~~~l~~~e~A~~~~~kal~l~P~n~~~~~~l~~l~~~ 276 (336) T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336) T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 613599999999999986999999999999998589989999999999999 No 10 >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A Probab=99.87 E-value=4e-22 Score=133.46 Aligned_cols=119 Identities=26% Similarity=0.389 Sum_probs=108.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112899999999998707888999999988531665---------------3023344455653321111000011100 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK---------------DAKLYSNRAACYTKLLEFQLALKDCEEC 66 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (123) .++.+..+++.|+.+|+.|+|++|+.+|++||..-+. ...+|.|+|.||+++++|++|+.+|.++ T Consensus 264 ~~~~a~~~k~~Gn~~fk~g~y~~Ai~~Y~kAl~~l~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~~~~Ai~~~~~a 343 (457) T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457) T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 08999988766679997689999999999999975652256655552021789999988999999857999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 000000001133468999872688899999999997489968889999999975 Q T0595 67 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 67 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) |+++|.++.+|+++|.++..++++++|+.+|+++++++|++..+...+..+... T Consensus 344 l~~dp~n~ka~~~~g~~~~~~~~~~~A~~~~~kal~l~p~n~~~~~~l~~~~~~ 397 (457) T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457) T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 875845499999999999986899999999999998789989999999999999 No 11 >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Probab=99.87 E-value=1e-21 Score=131.33 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=111.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) |+|++...++.+|..++..|+|++|+..|++++..+|+++.+|.++|.|+..+|++++|+..|.+++.++|.++.+|+++ T Consensus 16 i~~~~~~~l~~~a~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a~~~~p~~~~~~~~l 95 (148) T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148) T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 89776999999999999869999999999999983998799999999999984986788999986660383278998998 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 8999872688899999999997489968889999999 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123) |.++..+|++++|+++|++++++.|+++.......++ T Consensus 96 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (148) T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999970139999999999987189977899999999 No 12 >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Probab=99.87 E-value=8.5e-22 Score=131.71 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=111.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) |+|++...++.+|..++.+|+|++|+..|+++++.+|+++.+|.++|.|+..+|++++|+..|.++++.+|+++.+|+.+ T Consensus 13 i~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 92 (142) T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142) T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 79755999999999999868999999999999984999999999999999993999999999999997364580778778 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 8999872688899999999997489968889999999 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123) |.++..+|++++|+..|+++++++|++++......++ T Consensus 93 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~a 129 (142) T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 8998721669999999999987199987899999999 No 13 >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Probab=99.87 E-value=9.8e-22 Score=131.39 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=110.2 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707-88899999998853166530233444556533211110000111000000000011334 Q T0595 1 MNPDLALEEKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~-~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) |||+++.+|+.+|.++...+ ++++|+.+|+++|..+|++..+|.++|.++..+|++++|+.++.++|+++|.+..+|.. T Consensus 126 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~~l~~~pk~~~~~~~rg~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~ 205 (382) T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205 (382) T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 79765999999999999837789999999999998699768999999999999568999999998788648777799988 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 6899987268889999999999748996888999999997 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) +|.++..++++++|+++++++++++|.+..+|..+..++. T Consensus 206 ~~~~~~~~~~~~~al~~~~~~i~~dp~n~~a~~~r~~ll~ 245 (382) T 2h6f_A 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245 (382) T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 9999998540599999999987538987999999999999 No 14 >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Probab=99.86 E-value=1.6e-21 Score=130.23 Aligned_cols=118 Identities=24% Similarity=0.401 Sum_probs=109.6 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12899999999998707888999999988531----------------66530233444556533211110000111000 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKR----------------NPKDAKLYSNRAACYTKLLEFQLALKDCEECI 67 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 67 (123) ..+..+.++|+.+++.++|++|+..|++||.. +|..+.+|.++|.|+++++++++|+.+|.+++ T Consensus 221 ~~a~~lk~~Gn~~~~~~~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~p~~~~~~~nla~~~~~~~~~~~A~~~~~~al 300 (370) T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 76799999999999948899999999999850642321145799887493069999999999998588899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 000000011334689998726888999999999974899688899999999754 Q T0595 68 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 68 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) +++|+++.+|+++|.++..+|++++|+.+|+++++++|++.+++..++.+...+ T Consensus 301 ~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 354 (370) T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370) T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 868788999999999999839999999999999971999899999999999996 No 15 >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Probab=99.86 E-value=3.4e-21 Score=128.58 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=106.8 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653----------------02334445565332111100001110000 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----------------AKLYSNRAACYTKLLEFQLALKDCEECIQ 68 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 68 (123) .+..++..|+.+|+.|+|++|+..|++||...|.. ..+|.++|.|++++|++++|+.+|.++|+ T Consensus 37 ~a~~lk~~Gn~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~~l~~~~~Ai~~~~~al~ 116 (198) T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999999998689999999999998507233002146778762416899999999999985899999999998674 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 0000001133468999872688899999999997489968889999999975 Q T0595 69 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 69 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) ++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+... T Consensus 117 ~~P~~~ka~~~~g~~~~~l~~~~~A~~~~~kal~ldP~n~~~~~~l~~~~~~ 168 (198) T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198) T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 0887699999999999997899999999999997298989999999999999 No 16 >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus} Probab=99.86 E-value=2.8e-21 Score=128.99 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=107.2 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) .++.+..+|+.++..|+|++|+..|+++|+.+|+++.+|.++|.++..+|++++|+.+++++++++|+++.+|+++|.++ T Consensus 2 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 81 (359) T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 49999999999998799999999999999849998999999999999859999999999999872999899999998997 Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 8726888999999999974899688899999999 Q T0595 85 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 85 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) ..+|++++|+..|++++.++|++.........+. T Consensus 82 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 115 (359) T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359) T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHH T ss_conf 6344576799999999862863012111000000 No 17 >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Probab=99.86 E-value=4.8e-21 Score=127.76 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=108.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|..+..+..+|.++...|+|++|+.+|+++|+++|+++.+|.++|.++..+|++++|+..|+++++++|+++.++.++| T Consensus 39 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~kal~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 118 (275) T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275) T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 89999999999999998799999999999999874327999997878887543332200000001110000014588887 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99987268889999999999748996888999999 Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 116 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~ 116 (123) .++..+|++++|+..|+++++++|++......+.. T Consensus 119 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 153 (275) T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 78887655999999999999848101588899999 No 18 >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Probab=99.85 E-value=1.1e-20 Score=125.91 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=116.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..+..+|..+...|++++|+..|++++...|.++..+..+|.++..+|++++|+..++++++++|+++.+|+++ T Consensus 266 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388) T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388) T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 49998999999999999748799999988765415873001116799999987999999999999998688989999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 8999872688899999999997489968889999999975429 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 123 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~n 123 (123) |.++..+|++++|+..|+++++++|++.+++..++.++..+.+ T Consensus 346 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~l~D 388 (388) T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388) T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC T ss_conf 9999984999999999999997099989999999999998589 No 19 >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Probab=99.84 E-value=1.3e-21 Score=130.71 Aligned_cols=117 Identities=24% Similarity=0.260 Sum_probs=107.9 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 128999999999987078889999999885316653-----------------023344455653321111000011100 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-----------------AKLYSNRAACYTKLLEFQLALKDCEEC 66 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (123) +.+..++.+|+.+|++|+|.+|+.+|+++|.+.|.+ ..++.++|.||+++++|++|+.+|.++ T Consensus 177 ~~a~~~k~~Gn~~fk~g~y~~Ai~~Y~kal~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a 256 (338) T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338) T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999999999999859999999986765620642255554235899999999999987999999814758899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 000000001133468999872688899999999997489968889999999975 Q T0595 67 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 67 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) ++++|.++.+|+++|.+|..+|++++|+.+|++|++++|++..+...+..+... T Consensus 257 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~kal~ldP~n~~~~~~L~~l~~~ 310 (338) T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338) T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------ T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 860986479999999999987999999999999998399999999999999999 No 20 >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A Probab=99.83 E-value=4.5e-20 Score=122.68 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=103.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000--0000001133 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYT 78 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 78 (123) ++|+++..|..+|.++...|++++|+.+|.++++.+|+++.++..+|.++..+|++++|+..+.+++. ..|.++.+|+ T Consensus 66 ~~p~~~~a~~~La~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 145 (252) T 2ho1_A 66 IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145 (252) T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH T ss_conf 39998999999999999869999999999999985986457889998889988658999999999999744000047767 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 468999872688899999999997489968889999999975429 Q T0595 79 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 123 (123) Q Consensus 79 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~n 123 (123) ++|.++..+|++++|++.|+++++++|++..++..++.++..+.+ T Consensus 146 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 190 (252) T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC T ss_conf 799999976689999999999998689989999999999998699 No 21 >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A Probab=99.83 E-value=4.1e-20 Score=122.91 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=106.6 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+....++.+|..++..|+|++|+.+|++++..+|.++.+|..+|.++..+|++++|+..++++++++|+++.+|+.+ T Consensus 31 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 110 (151) T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151) T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 89768999999999999869999999987999986988799999999999986981579999999998766775999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 8999872688899999999997489968889 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123) |.++..+|++++|+..|+++++..|++.-.. T Consensus 111 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 141 (151) T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEKLKI 141 (151) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 9998874559999999999986399819999 No 22 >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Probab=99.83 E-value=2.7e-20 Score=123.83 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=105.5 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 971128999999999987078889999999885316653023344455653321-1110000111000000000011334 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-EFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) ++|+.+.++..+|.++.+++++++|+..++++|.++|++..+|..||.|+..++ ++++|+..++++++++|++..+|.+ T Consensus 92 ~~~~~~~a~~~~~~~~~~~e~~e~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~~l~~~pk~~~~~~~ 171 (382) T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382) T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 78479999999999999776519999999999987976599999999999983778999999999999869976899999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 689998726888999999999974899688899999999754 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) +|.++..+|++++|+++|+++++++|++..++..++.++..+ T Consensus 172 rg~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~~~~~~~~~ 213 (382) T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382) T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 999999956899999999878864877779998899999985 No 23 >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A Probab=99.83 E-value=2e-20 Score=124.57 Aligned_cols=101 Identities=24% Similarity=0.216 Sum_probs=43.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|+.+..|..+|..++..|+|++|+.+|+++++++|+++.+|..+|.++..+|++++|+..++++++.+|+++.+|..+| T Consensus 306 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 385 (537) T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385 (537) T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 85102455511310565534788888899999849764022256665677634599999999999986899899999789 Q ss_pred HHHHHHCCHHHHHHHHHHHHH Q ss_conf 999872688899999999997 Q T0595 82 AALEAMKDYTKAMDVYQKALD 102 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~ 102 (123) .++..+|++++|++.|+++++ T Consensus 386 ~~~~~~g~~~~A~~~~~~al~ 406 (537) T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKR 406 (537) T ss_dssp HHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHH T ss_conf 999987999999999999986 No 24 >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Probab=99.83 E-value=5.9e-20 Score=122.06 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=102.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..+..+|..+...|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..++++++++|+++.+|+++ T Consensus 167 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 246 (327) T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246 (327) T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 39756465567778899887678899999999986998189999999998861369999999999998499989999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCH Q ss_conf 8999872688899999999997489968 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCK 108 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~ 108 (123) |.++..+|++++|++.|++|++++|... T Consensus 247 g~~~~~~g~~~~A~~~~~~Al~l~~~~~ 274 (327) T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSC T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCC T ss_conf 9999986999999999999985899999 No 25 >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Probab=99.82 E-value=7.4e-21 Score=126.78 Aligned_cols=93 Identities=29% Similarity=0.485 Sum_probs=41.9 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) .|.+++++|+.+++.|+|++|+.+|+++|+++|+ +.+|.++|.||..+|++++|+.+|+++|+++|+++.+|+++|.++ T Consensus 5 ~a~al~~~Gn~~~~~g~y~~Ai~~y~~al~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~l~P~~~~a~~~la~~~ 83 (514) T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514) T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 9999999999999888999999999999846997-999999999999849999999999999984999899999999999 Q ss_pred HHHCCHHHHHHHHH Q ss_conf 87268889999999 Q T0595 85 EAMKDYTKAMDVYQ 98 (123) Q Consensus 85 ~~~~~~~~A~~~~~ 98 (123) ..+|++++|+..|. T Consensus 84 ~~~g~~~eA~~~~~ 97 (514) T 2gw1_A 84 EGLGKFADAMFDLS 97 (514) T ss_dssp HHTTCHHHHHHHHH T ss_pred HHCCCHHHHHHHHH T ss_conf 98799999999999 No 26 >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Probab=99.82 E-value=1.2e-20 Score=125.65 Aligned_cols=109 Identities=12% Similarity=0.108 Sum_probs=102.7 Q ss_pred CCH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 711-2899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 2 NPD-LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 2 nP~-~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ||. ....+..+|..++..|++++|+..|+++|+.+|+++.+|..+|.++..+|++++|+.+++++++++|.++.+|+.+ T Consensus 12 ~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~l 91 (121) T 1hxi_A 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121) T ss_dssp CGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 94579999999999999968999999999999987889999999972999994885767788999998697989999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 899987268889999999999748996888 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEA 110 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a 110 (123) |.++..+|++++|++.|+++++++|+++++ T Consensus 92 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 121 (121) T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQYEQL 121 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------- T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999599999999999999878398629 No 27 >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A Probab=99.82 E-value=8.2e-21 Score=126.56 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=54.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|+.+..+..+|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|.++.++.++| T Consensus 340 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 419 (537) T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537) T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 97640222566656776345999999999999868998999997899999879999999999999863989899999999 Q ss_pred HHHHH----------------HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 99987----------------2688899999999997489968889999999975 Q T0595 82 AALEA----------------MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 82 ~~~~~----------------~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) .++.. .+++++|+..|+++++++|++..++..++.++.. T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~kal~l~p~~~~a~~~lg~~~~~ 474 (537) T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537) T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9998657889988655799875589999999999998599989999999999998 No 28 >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Probab=99.82 E-value=5.2e-20 Score=122.34 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=64.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..|..+|.+++..|++++|+..|++++.++|+++.+|.++|.++..+|++++|+..+.++++.+|+++.+|..+ T Consensus 299 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 378 (514) T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378 (514) T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHH T ss_pred HCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 64103578886500000232178999999999860876377777656765101257777899999998789988999878 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHH Q ss_conf 89998726888999999999974899688 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKE 109 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~ 109 (123) |.++..+|++++|+..|+++++++|++.. T Consensus 379 g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 407 (514) T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDG 407 (514) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSS T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHH T ss_conf 89998722599999999999973988889 No 29 >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A Probab=99.82 E-value=7.2e-20 Score=121.60 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=102.1 Q ss_pred CCHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112--89999999999870788899999998853166530233444556533211110000111000000000011334 Q T0595 2 NPDL--ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 2 nP~~--a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) +|+. +..+..+|..+...|+|++|+.+|+++++.+|+++.+|..+|.++..+|++++|+..++++++++|+++.+|++ T Consensus 211 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 290 (368) T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368) T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 97755689998886789882656889998899998699979999999999998468999999999999849998999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 6899987268889999999999748996888 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEA 110 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a 110 (123) +|.++..+|++++|++.|+++++++|++... T Consensus 291 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 321 (368) T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368) T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC--- T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999998699999999999999739878776 No 30 >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Probab=99.82 E-value=1.6e-19 Score=119.82 Aligned_cols=117 Identities=27% Similarity=0.426 Sum_probs=111.0 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999870788899999998853166530233444556533211110000111000000000011334689998 Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 85 (123) Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 85 (123) |++|+.+|..++..|+|++|+..|+++++.+|.+...+..++.++...++++.|+..+.++++++|+++.++..+|.++. T Consensus 1 a~ay~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 80 (136) T 2fo7_A 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136) T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 98899999999996899999999999987295429999999999988156787778999999869762699999889999 Q ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 7268889999999999748996888999999997542 Q T0595 86 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 86 ~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~ 122 (123) .+|++++|+..|+++++++|+++.++..++.++..+. T Consensus 81 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 117 (136) T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117 (136) T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC T ss_conf 8499999999999998739760999999999999968 No 31 >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Probab=99.81 E-value=2.9e-19 Score=118.48 Aligned_cols=122 Identities=13% Similarity=0.069 Sum_probs=107.6 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHH Q ss_conf 971128999999999987078889999999885316653023344455653-321111000011100000--00000113 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQL--EPTFIKGY 77 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~--~p~~~~~~ 77 (123) ++|+++..|..+|..++..|++++|+.+|+++++++|+++.+|..+|.++. +.|++++|+..++++++. +|..+.+| T Consensus 37 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~l~~~~~~~~~A~~~~~~ai~~~~~~~~~~~~ 116 (225) T 2vq2_A 37 SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116 (225) T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 68998999999999999878999999999999873998704546569999988087088999999998557761247888 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 346899987268889999999999748996888999999997542 Q T0595 78 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~ 122 (123) +++|.++..+|++++|++.|+++++++|+++.++..++.+...++ T Consensus 117 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 161 (225) T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC T ss_conf 625899997477999999999999868998999999999999949 No 32 >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Probab=99.81 E-value=1.4e-19 Score=120.15 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=100.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------- Q ss_conf 971128999999999987078889999999885316653023344455653321111000011100000000-------- Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------- 72 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------- 72 (123) ++|+.+..+.++|.++...|++++|+..|+++|+++|+++.+|.++|.++..+|++++|+..++++++..|. T Consensus 32 ~~~~~~~~~~nlG~~y~~~~~~~~A~~~~~kal~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 111 (213) T 1hh8_A 32 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111 (213) T ss_dssp SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 39997999999999999869999999999997752630468988478899885779999999999987397775689999 Q ss_pred --------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH Q ss_conf --------0011334689998726888999999999974--89968889999999 Q T0595 73 --------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRC 117 (123) Q Consensus 73 --------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~l~~~ 117 (123) ...+|+++|.++..+|++++|++.|++++.+ +|++..+...+... T Consensus 112 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~l~~~p~~~~~~~~l~~~ 166 (213) T 1hh8_A 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213) T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 9876294309999999999998789999999999998634699979999999999 No 33 >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A Probab=99.81 E-value=1.6e-19 Score=119.84 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=102.1 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12899999999998707888999999988531665302334445565332111100001110000000000113346899 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 83 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 83 (123) +..+++.++|..++..|++++|+..|+++|+++|+++.+|.++|.++..+|++++|+..++++++++|+++.++..+|.+ T Consensus 35 ~~~eay~~LG~~y~~~g~~~~A~~~~~kal~~~p~~~~a~~~La~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~a~~ 114 (252) T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252) T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 79999999999999869999999999999983999899999999999986999999999999998598645788999888 Q ss_pred HHHHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHC Q ss_conf 9872688899999999997--48996888999999997542 Q T0595 84 LEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 84 ~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~q~ 122 (123) +..+|++++|+..|.+++. ..|.+..++..++.++..+. T Consensus 115 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~lg~~~~~~~ 155 (252) T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252) T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC T ss_conf 99886589999999999997440000477677999999766 No 34 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Probab=99.80 E-value=8.9e-20 Score=121.14 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=99.3 Q ss_pred HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 07888999999988531665302334445565332111100001110000000000113346899987268889999999 Q T0595 19 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 98 (123) Q Consensus 19 ~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (123) .||+++|+..|.++|+.+|+++.+|.++|.++..+|++++|+..++++++++|+++.+|.++|.++..+|++++|++.|+ T Consensus 2 ~gD~~~Al~~l~~ai~~~P~~~~a~~~Lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~~A~~~~~ 81 (568) T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568) T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99889999999999996899999999999999986999999999999998499999999999999998499999999999 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 999748996888999999997542 Q T0595 99 KALDLDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 99 ~al~l~p~~~~a~~~l~~~~~~q~ 122 (123) ++++++|++..++..++.++..++ T Consensus 82 ~al~l~P~~~~a~~~lg~~~~~~g 105 (568) T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAG 105 (568) T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTT T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 999729999999999999999869 No 35 >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Probab=99.80 E-value=8e-19 Score=116.15 Aligned_cols=115 Identities=25% Similarity=0.423 Sum_probs=102.0 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H Q ss_conf 128999999999987078889999999885316653023344455653321111000011100000000001-------1 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK-------G 76 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~ 76 (123) ..|..++++|+.++..|+|++|+.+|+++|+++|.++.+|.++|.||..+|++++|+.++++++.++|+++. + T Consensus 2 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 81 (131) T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 78999999999999868999999999999870988799999678999874769999999999997492471656899999 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 3346899987268889999999999748996888999999997 Q T0595 77 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) +.++|.++..++++++|++.|++++... ++.++...+..+.. T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~l~~l~~~e~ 123 (131) T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQAEK 123 (131) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHH T ss_conf 9999999998199999999999987369-99999999999999 No 36 >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Probab=99.79 E-value=1e-18 Score=115.63 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=104.3 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) .+.++.++|..+..+++|+.|+.+|++ ++|.++.+|+++|.||..+|++++|+..|+++|+++|.++.+|+++|.++ T Consensus 5 ~~~~~~~~g~~~~~~~d~~~Al~~~~~---~~~~~~~~~~nlG~~y~~~~~~~~A~~~~~kal~~~p~~~~a~~~lg~~~ 81 (213) T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 999999999999982889999999986---39997999999999999869999999999997752630468988478899 Q ss_pred HHHCCHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHHC Q ss_conf 87268889999999999748996----------------888999999997542 Q T0595 85 EAMKDYTKAMDVYQKALDLDSSC----------------KEAADGYQRCMMAQY 122 (123) Q Consensus 85 ~~~~~~~~A~~~~~~al~l~p~~----------------~~a~~~l~~~~~~q~ 122 (123) ..+|++++|+..|++++..+|.+ .+++..++.++..+. T Consensus 82 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 135 (213) T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213) T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 885779999999999987397775689999987629430999999999999878 No 37 >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Probab=99.78 E-value=5.9e-19 Score=116.81 Aligned_cols=107 Identities=28% Similarity=0.506 Sum_probs=104.5 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|.....+..++..+...++++.|+..|+++++.+|+++.++..+|.++..+|++++|+..+.++++++|+++.+|.++ T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 109 (136) T 2fo7_A 30 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109 (136) T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 29542999999999998815678777899999986976269999988999984999999999999987397609999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCC Q ss_conf 899987268889999999999748996 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSC 107 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~ 107 (123) |.++..+|++++|+..|+++++++|+| T Consensus 110 a~~~~~~~~~~~A~~~~~~al~l~P~n 136 (136) T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALELDPRS 136 (136) T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHSTTC T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC T ss_conf 999999689999999999999868498 No 38 >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A Probab=99.78 E-value=4.3e-18 Score=112.30 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 45565332111100001110000000000113346899987268889999999999748996888999999997 Q T0595 46 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 46 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) +|.++..+|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..++.++. T Consensus 223 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 296 (368) T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 86789882656889998899998699979999999999998468999999999999849998999999999999 No 39 >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27} Probab=99.77 E-value=3.4e-18 Score=112.84 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=58.9 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf 99999998707888999999988531665302334445565332111100001110000000000113346899987--- Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA--- 86 (123) Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--- 86 (123) ..+|..++..|+|++|+..|+++|+++|+++.+|.++|.++..+|++++|+..+.++++++|++..++..+|.++.. T Consensus 9 ~~lG~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 88 (217) T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYR 88 (217) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHH T ss_conf 99999999878999999999999986899999999999999987899999999986403587301322022221001123 Q ss_pred --------HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf --------2688899999999997489968889999999975 Q T0595 87 --------MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 87 --------~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) .+++++|+..|+++++++|++..++..++.++.. T Consensus 89 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 130 (217) T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217) T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 677899871659999999988874499859999999999999 No 40 >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A* Probab=99.77 E-value=2.9e-18 Score=113.23 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=105.0 Q ss_pred CCCHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 971128999999999987078----------8899999998853166530233444556533211--1100001110000 Q T0595 1 MNPDLALEEKNKGNECFQKGD----------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--FQLALKDCEECIQ 68 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~----------~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~ 68 (123) +||+++.+|+.+|..+...+. +++|+.+|+++|+.+|+++.+|.++|.++..+++ +++|+..+.++++ T Consensus 59 ~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~r~~~l~~l~~~~~~~al~~~~kal~ 138 (331) T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 138 (331) T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 88886899999999999706233537788899999999999998798888999999999987363668999999999986 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 00000011334689998726888-9999999999748996888999999997542 Q T0595 69 LEPTFIKGYTRKAAALEAMKDYT-KAMDVYQKALDLDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 69 ~~p~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~ 122 (123) ++|.+..+|..+|.++..+++.. .|+..++++++++|++..++..++.++.... T Consensus 139 ~~p~~~~a~~~~~~~~~~~~~~~~~al~~~~~ai~~~p~~~~a~~~lg~~l~~l~ 193 (331) T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331) T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 6835178888899999873457399999999999859986899999999999822 No 41 >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Probab=99.77 E-value=7.3e-18 Score=111.10 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=40.9 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9711289999999999870788899999998853166530233444556533211110000111000000000 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 73 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 73 (123) +||+++..|..+|.+++..|++++|+.+|+++++++|+++.+|.++|.++..++++++|+..+..++...|.+ T Consensus 52 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 124 (243) T 2q7f_A 52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124 (243) T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH T ss_conf 0999899999999999987899999999999987598659999987799999268044478877765138512 No 42 >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Probab=99.77 E-value=2e-18 Score=114.04 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=79.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|+....+...+..+...+++++|+..+++++..+|..+.++..+|.++...|++++|+..++++++++|+++.+|+++| T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 200 (243) T 2q7f_A 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200 (243) T ss_dssp TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 85124666531014688875899899999999747440022211001243035378888999999997889899999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 9998726888999999999974899688899999 Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 115 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~ 115 (123) .++..+|++++|++.|+++++++|++..++..++ T Consensus 201 ~~~~~~g~~~~A~~~~~kal~l~P~~~~A~~~~~ 234 (243) T 2q7f_A 201 VTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243) T ss_dssp HHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 9999959999999999999980989999999998 No 43 >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Probab=99.76 E-value=3.8e-18 Score=112.59 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=69.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|..+..+..+|..++..|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..+++++...|..+..+..+| T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 312 (388) T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388) T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 45445788899999998699999999999999749998999999999999748799999988765415873001116799 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 9998726888999999999974899688899999999754 Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) .++...|++++|++.|+++++++|++..++..++.++..+ T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 352 (388) T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388) T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 9999879999999999999986889899999999999984 No 44 >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Probab=99.76 E-value=7.1e-18 Score=111.18 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=35.6 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 99999987078889999999885316653023344455653321111000011100000000001133468999872688 Q T0595 11 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 90 (123) Q Consensus 11 ~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 90 (123) .+|..+++.|++++|+..|+++|+.+|+++++|..+|.|+..+|++++|+..+.++++++|.++.+|..+|.++...|++ T Consensus 26 ~~g~~~~~~g~~~eA~~~f~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~~~~ 105 (327) T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH T ss_conf 99999998699999999999999878998999999999999879999999999999874987699999888899881543 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 899999999997489 Q T0595 91 TKAMDVYQKALDLDS 105 (123) Q Consensus 91 ~~A~~~~~~al~l~p 105 (123) ++|+..|++++...| T Consensus 106 ~~A~~~l~~~~~~~~ 120 (327) T 3cv0_A 106 NAALASLRAWLLSQP 120 (327) T ss_dssp HHHHHHHHHHHHTST T ss_pred HHHHHHHHHHHHHHH T ss_conf 778998877887644 No 45 >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Probab=99.76 E-value=6.4e-18 Score=111.42 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=102.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) .|+.+..+.++|..++..|++++|+..|+++|+.+|+++.+|..+|.++..+|++++|+..++++++++|.++.+|..+| T Consensus 4 ~~~~~~~~~~La~~y~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (225) T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225) T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 58999999999999998699999999999999868998999999999999878999999999999873998704546569 Q ss_pred HHHH-HHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHC Q ss_conf 9998-726888999999999974--8996888999999997542 Q T0595 82 AALE-AMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 82 ~~~~-~~~~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~q~ 122 (123) ..+. +.|++++|+..|++++.. +|....++..++.++..+. T Consensus 84 ~~l~~~~~~~~~A~~~~~~ai~~~~~~~~~~~~~~lg~~~~~~~ 127 (225) T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225) T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC T ss_conf 99998808708899999999855776124788862589999747 No 46 >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Probab=99.75 E-value=1.2e-17 Score=109.91 Aligned_cols=118 Identities=20% Similarity=0.293 Sum_probs=51.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112899999999998707888999999988531665---------3023344455653321111000011100000000 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK---------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 72 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 72 (123) +|+++..+..+|..++..|++++|+..+.++++..+. ....+.++|.++...|++++|+..++++++++|+ T Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 268 (330) T 3hym_B 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330) T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT T ss_pred CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCC T ss_conf 85200001000000000103999999999999971762310210100011000123687512299999999999986989 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 00113346899987268889999999999748996888999999997 Q T0595 73 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) ++.+|..+|.++..+|++++|+++|++++.++|++..++..+++|+. T Consensus 269 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~le 315 (330) T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330) T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 89999999999998799999999999998759999999999999998 No 47 >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus} Probab=99.75 E-value=1.3e-17 Score=109.87 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998707888999999988531665302----3344455653321111000011100000000001133468999 Q T0595 9 EKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK----LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 9 ~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) +...|..++..|+|++|+..|+++++.+|++.. .+..+|.++...|++++|+..++++++++|+++.+|+++|.++ T Consensus 237 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 316 (359) T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 00355566653222210001235653287510222222234566654011499999999999983999899999999999 Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 872688899999999997489968889999999975 Q T0595 85 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 85 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) ..+|++++|+++|+++++++|++.++...+.++... T Consensus 317 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~a~~~ 352 (359) T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359) T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 985999999999999987499989999999999999 No 48 >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Probab=99.75 E-value=1.2e-18 Score=115.21 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=99.6 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999870788899999998853166530233444556533211----------1100001110000000000113346 Q T0595 11 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE----------FQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 11 ~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) .+|..+.+.+.|++|++.|+++|+++|+++.+|.++|.++..+++ +++|+..|+++|+++|+++.+|+++ T Consensus 7 ~~~~~~~rl~~feeA~~~~~~al~~~P~~~~a~~~~g~~l~~~~~~~~~~~~~~~~~~Ai~~~~kai~l~P~~~~a~~nl 86 (158) T 1zu2_A 7 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 86 (158) T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 88999999856999999999999757001699999988888864443228888549999999999887634029999778 Q ss_pred HHHHHHHCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 899987268-----------8899999999997489968889999999975 Q T0595 81 AAALEAMKD-----------YTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 81 g~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) |.++..+|+ +++|+++|+++++++|++..+...++.+..+ T Consensus 87 g~a~~~~g~~~~~~~~a~~~~~~A~~~f~kal~l~p~n~~~~~~L~~~~ka 137 (158) T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158) T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999864065543310000100278888999998698939999999999998 No 49 >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Probab=99.75 E-value=2.3e-18 Score=113.69 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=82.6 Q ss_pred CCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112-89999999999870788899999998853166530233444556533211110000111000000000011334 Q T0595 1 MNPDL-ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 1 lnP~~-a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) |||++ |++|..+|.+++.+|+|++|+.+|+++++.+|.+..+|.++|.|+..+|++++|+.+|+++|+++|+++.++++ T Consensus 3 ldp~n~a~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~ 82 (91) T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91) T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99968699999999999996899999999999987499879999879999999689999999999999849898999999 Q ss_pred HHHHHHHHC Q ss_conf 689998726 Q T0595 80 KAAALEAMK 88 (123) Q Consensus 80 lg~~~~~~~ 88 (123) +|.++.++| T Consensus 83 la~~~~~~G 91 (91) T 1na3_A 83 LGNAKQKQG 91 (91) T ss_dssp HHHHHHHHC T ss_pred HHHHHHHCC T ss_conf 999999766 No 50 >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Probab=99.74 E-value=9.5e-18 Score=110.51 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=100.0 Q ss_pred CCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078-88999999988531665302334445565332111100001110000000000113346 Q T0595 2 NPDLALEEKNKGNECFQKGD-YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~-~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) +|+++..|..+|..+...|+ +++|+.+|+++++++|+++.+|..+|.++...|++++|+..+.+++..+|.+..+++.+ T Consensus 86 ~p~~~~~~~~l~~~~~~~~~~~e~A~~~~~ka~~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 165 (330) T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330) T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 89999999999999998399889999999999984998899999999999987999999999999998385549999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 89998726888999999999974899688899999999754 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) |.++..+|++++|+..|+++++++|+++.++..++.++..+ T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (330) T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206 (330) T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCC T ss_conf 99999849915799989989862852000010000000001 No 51 >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27} Probab=99.74 E-value=3.9e-17 Score=107.30 Aligned_cols=121 Identities=18% Similarity=0.127 Sum_probs=83.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH--------------------------------------- Q ss_conf 97112899999999998707888999999988531665302--------------------------------------- Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK--------------------------------------- 41 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~--------------------------------------- 41 (123) ++|+++..+..+|.++...|++++|+.+|+++|+++|++.. T Consensus 34 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 113 (217) T 2pl2_A 34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217) T ss_dssp TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 68999999999999999878999999999864035873013220222210011236778998716599999999888744 Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf ------33444556533211110000111000000000011334689998726888999999999974899688899999 Q T0595 42 ------LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 115 (123) Q Consensus 42 ------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~ 115 (123) +|.++|.++..++++++|+..+.++++..+ ++.+|..+|.++..+|++++|+..|+++++++|++..++..++ T Consensus 114 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 192 (217) T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192 (217) T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 998599999999999994899999999999985799-8369999869999868999999999999984999899999999 Q ss_pred HHHHHHC Q ss_conf 9997542 Q T0595 116 RCMMAQY 122 (123) Q Consensus 116 ~~~~~q~ 122 (123) .++..++ T Consensus 193 ~~~~~~g 199 (217) T 2pl2_A 193 SALLLKG 199 (217) T ss_dssp HHHTC-- T ss_pred HHHHHCC T ss_conf 9999839 No 52 >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Probab=99.73 E-value=2e-17 Score=108.82 Aligned_cols=119 Identities=10% Similarity=0.044 Sum_probs=98.4 Q ss_pred CCCHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH Q ss_conf 971128999999999987--07888999999988531665302334445565332111100-------001110000000 Q T0595 1 MNPDLALEEKNKGNECFQ--KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLA-------LKDCEECIQLEP 71 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~--~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A-------~~~~~~al~~~p 71 (123) +||++..+|+.+|.++.. .+++++|+..++++|+.+|++..+|..+|.++..+|++++| +..+.++++++| T Consensus 62 ~nP~~~~a~~~r~~~l~~l~~~~~~eAl~~~~~~l~~~pk~~~~~~~r~~~~~~l~~~~~a~~~~~~al~~~~k~l~~~p 141 (306) T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP 141 (306) T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT T ss_pred HCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 89555899999999999723558999999999999878887999999999999851066556429999999999874186 Q ss_pred HHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 000113346899987268889--999999999748996888999999997 Q T0595 72 TFIKGYTRKAAALEAMKDYTK--AMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 72 ~~~~~~~~lg~~~~~~~~~~~--A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) .+..+|..+|.++..++.+++ ++..+.++++++|++..++..++.++. T Consensus 142 ~n~~~~~~~~~~~~~~~~~~~~~al~~~~~~i~~~p~n~~a~~~~~~~l~ 191 (306) T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306) T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 34899999999998856653799999999998649986899999999998 No 53 >2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8 Probab=99.72 E-value=7.2e-18 Score=111.12 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=93.2 Q ss_pred HHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHCCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 128999999--9999870788899999998853166530------------23344455653321111000011100000 Q T0595 4 DLALEEKNK--GNECFQKGDYPQAMKHYTEAIKRNPKDA------------KLYSNRAACYTKLLEFQLALKDCEECIQL 69 (123) Q Consensus 4 ~~a~~~~~~--g~~~~~~~~~~~Ai~~~~~ai~~~p~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 69 (123) +.+.++..+ |..++..|+|++|+.+|+++|.+.|+.+ .+|.++|.|+.++|++++|+.+|+++|.+ T Consensus 7 ~~a~a~~~l~~g~~~~~~g~y~~A~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~ 86 (159) T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159) T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999999999998599999999999999869201267775112678999999999999839899999999999997 Q ss_pred HHH-----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH Q ss_conf 000-----------0011334689998726888999999999974899688 Q T0595 70 EPT-----------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 109 (123) Q Consensus 70 ~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~ 109 (123) .|. ...+++++|.++..+|++++|+.+|++++++.|+... T Consensus 87 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~~g~~~~Ai~~~~~Al~l~~~~~~ 137 (159) T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159) T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 665065510101368899965999999718869999999999986564140 No 54 >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A* Probab=99.72 E-value=3e-17 Score=107.90 Aligned_cols=121 Identities=9% Similarity=-0.035 Sum_probs=93.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------ Q ss_conf 971128999999999987078889-9999998853166530233444556533211110000111000------------ Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQ-AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI------------ 67 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~-Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al------------ 67 (123) ++|++..+|..+|..+...+++.+ |+.+|+++|..+|+++.+|.++|.++..+|++++|+..+.+++ T Consensus 139 ~~p~~~~a~~~~~~~~~~~~~~~~~al~~~~~ai~~~p~~~~a~~~lg~~l~~l~~~~eA~~~~~~a~~~~~~~~~~~~~ 218 (331) T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331) T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 68351788888999998734573999999999998599868999999999998223344577788899862787899999 Q ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf --------------------------------------------------000000011334689998726888999999 Q T0595 68 --------------------------------------------------QLEPTFIKGYTRKAAALEAMKDYTKAMDVY 97 (123) Q Consensus 68 --------------------------------------------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (123) ..+|....+|+.+|.++..+|++++|+++| T Consensus 219 ~~~~~p~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~np~~~~~~~~lg~~~~~~~~~~eA~~~~ 298 (331) T 3dss_A 219 AFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 298 (331) T ss_dssp HHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 98749145789999998750430356668889988999999999999872368578999999999998649999999999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 999974899688899999999754 Q T0595 98 QKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 98 ~~al~l~p~~~~a~~~l~~~~~~q 121 (123) ++++++||.+...|..++.++..+ T Consensus 299 ~kai~lDP~~~~y~~~l~~~~~~~ 322 (331) T 3dss_A 299 STLKAVDPMRAAYLDDLRSKFLLE 322 (331) T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 999885946599999999999888 No 55 >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Probab=99.71 E-value=6.4e-17 Score=106.17 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=97.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------- Q ss_conf 9711289999999999870788899999998853166530233444556533211110000111000000---------- Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---------- 70 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------- 70 (123) ++|+++..|..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..+.++++.+ T Consensus 72 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 151 (275) T 1xnf_A 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151 (275) T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 74327999997878887543332200000001110000014588887788876559999999999998481015888999 Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHCCH Q ss_conf ------------------------------------------------------------00001133468999872688 Q T0595 71 ------------------------------------------------------------PTFIKGYTRKAAALEAMKDY 90 (123) Q Consensus 71 ------------------------------------------------------------p~~~~~~~~lg~~~~~~~~~ 90 (123) |..+.+|+.+|.++..+|++ T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 231 (275) T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275) T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCH T ss_conf 99987631047999999877504521213456788776554432038899999876520702158999999999987899 Q ss_pred HHHHHHHHHHHHHCCCCHHH Q ss_conf 89999999999748996888 Q T0595 91 TKAMDVYQKALDLDSSCKEA 110 (123) Q Consensus 91 ~~A~~~~~~al~l~p~~~~a 110 (123) ++|+..|++++.++|.+... T Consensus 232 ~~A~~~~~~al~~~p~~~~~ 251 (275) T 1xnf_A 232 DSATALFKLAVANNVHNFVE 251 (275) T ss_dssp HHHHHHHHHHHTTCCTTCHH T ss_pred HHHHHHHHHHHHCCCCCHHH T ss_conf 99999999999829967999 No 56 >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Probab=99.70 E-value=8.7e-17 Score=105.48 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=100.9 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH Q ss_conf 9999999870788899999998853166530233444556533---211110000111000000--00001133468999 Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK---LLEFQLALKDCEECIQLE--PTFIKGYTRKAAAL 84 (123) Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 84 (123) -.+++.++..+++.+|.+.|+++++.+|.++++++++|.|+.. .+++++|+..++++++.+ |..+.+|+++|.+| T Consensus 5 e~l~n~~~~~~d~~~a~~~y~~al~~~p~~~~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~~~~~~~ly~La~~y 84 (126) T 1nzn_A 5 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999740878999999999999740999889999999999982875589999999999986258985599999999999 Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 872688899999999997489968889999999975 Q T0595 85 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 85 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) ..+|++++|+++|+++++++|++++++..+..+... T Consensus 85 ~~~g~~~~A~~~~~~~L~~~P~~~~A~~~~~~i~~~ 120 (126) T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126) T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 983437899999999997692979999999999999 No 57 >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Probab=99.70 E-value=1.1e-17 Score=110.27 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=91.7 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000--0001133 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYT 78 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 78 (123) |-|+++..|..+|.+++..|+|++|+.+|+++++++|.++.+|.++|.++..+|+|++|+.+|+++|++.| .++.+|+ T Consensus 1 ~~~~np~~~~~~G~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 80 (112) T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112) T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH T ss_conf 99899999999999999968999999999999871988899999988998602469999999999985799966799999 Q ss_pred HHHHHHHHH-CCHHHHHHHHHHH Q ss_conf 468999872-6888999999999 Q T0595 79 RKAAALEAM-KDYTKAMDVYQKA 100 (123) Q Consensus 79 ~lg~~~~~~-~~~~~A~~~~~~a 100 (123) ++|.++..+ |+..+|...+.++ T Consensus 81 ~~g~~l~~~~~~~~ea~~~~~~a 103 (112) T 2kck_A 81 AKADALRYIEGKEVEAEIAEARA 103 (112) T ss_dssp HHHHHHTTCSSCSHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999879999999999998 No 58 >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Probab=99.69 E-value=9.7e-17 Score=105.21 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=102.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321--1110000111000000000011334 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--EFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) +|+.+.++..+|-.+...+.+++|+..|+++|+++|++..+|.+||.|+..++ ++++|+..++++++.+|++..+|+. T Consensus 29 ~~~~~~~~~~~~a~~~~~e~~~~Al~~~~kai~~nP~~~~a~~~r~~~l~~l~~~~~~eAl~~~~~~l~~~pk~~~~~~~ 108 (306) T 3dra_A 29 DEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306) T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 98999999999999981886299999999999989555899999999999723558999999999999878887999999 Q ss_pred HHHHHHHHCCHHHH-------HHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 68999872688899-------999999997489968889999999975 Q T0595 80 KAAALEAMKDYTKA-------MDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 80 lg~~~~~~~~~~~A-------~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) +|.++..+|++.+| ++.+.++++++|++..++..++-+... T Consensus 109 r~~~~~~l~~~~~a~~~~~~al~~~~k~l~~~p~n~~~~~~~~~~~~~ 156 (306) T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT 156 (306) T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 999999851066556429999999999874186348999999999988 No 59 >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens} Probab=99.69 E-value=3.6e-17 Score=107.48 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=97.1 Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11289999999999870788899999998853166530233444556533211110000111000000000011334689 Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 82 (123) Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 82 (123) |..+..+..+|+.++..|+|++|+.+|+++++.+ ++.++..+|++++|+.+|+++++++|.++.+|+++|. T Consensus 60 ~~~~~~~~~lg~~~~~~~~y~~A~~~~~~al~~~---------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (167) T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK---------KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAE 130 (167) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------HCC--------------------CCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 8999999999999998667999999999999961---------9999998777999999999998749356999999999 Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 9987268889999999999748996888999999997 Q T0595 83 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 83 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) +|..+|++++|+..|+ .+...|.++++...+++++. T Consensus 131 ~~~~~g~~~~Ai~~le-~i~~~~~~~~~~~~Lg~lY~ 166 (167) T 3ffl_A 131 CYTVLKQDKDAIAILD-GIPSRQRTPKINMLLANLYK 166 (167) T ss_dssp HHHHTTCHHHHHHHHH-TSCGGGCCHHHHHHHHHHCC T ss_pred HHHHCCCHHHHHHHHH-HHHHCCCCHHHHHHHHHHHC T ss_conf 9998399999999999-99862899799999999868 No 60 >2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli} Probab=99.68 E-value=2e-16 Score=103.55 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=103.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9711289999999999870788899999998853166530233444556533211---1100001110000000000113 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE---FQLALKDCEECIQLEPTFIKGY 77 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~ 77 (123) +||+++.+|..+|.+++..|++++|+..|++++..+|.+...+...+.++...+. ...+...+.+++..+|.++.+| T Consensus 39 ~~P~~~~~~~~lg~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (177) T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118 (177) T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 88999999999999999859989999999999998764447776489999985453222210000000000131469999 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 346899987268889999999999748996888999999 Q T0595 78 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 116 (123) Q Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~ 116 (123) +++|.++...|++++|++.|+++++++|++.+....+.. T Consensus 119 ~~lg~~~~~~g~~~~Ai~~~~kal~l~p~~~~~~~~~~~ 157 (177) T 2e2e_A 119 MLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 999999999699999999999999749997539999999 No 61 >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans} Probab=99.68 E-value=3.5e-17 Score=107.54 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=89.1 Q ss_pred HHCCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 7078889999999885316---6530233444556533211110000111000000000011334689998726888999 Q T0595 18 QKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM 94 (123) Q Consensus 18 ~~~~~~~Ai~~~~~ai~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 94 (123) .+|++++||.+|+++|+++ |+.+.+|.++|.+|..+|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+ T Consensus 2 ~lG~~~eAi~~ye~Al~~~~~~p~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~eA~ 81 (117) T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117) T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99699999999999984588894179999999999998186387789999999986556999986423555312499999 Q ss_pred HHHHHHHHHCCCCHHHHH Q ss_conf 999999974899688899 Q T0595 95 DVYQKALDLDSSCKEAAD 112 (123) Q Consensus 95 ~~~~~al~l~p~~~~a~~ 112 (123) +.+++++...|+++.+.. T Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (117) T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117) T ss_dssp HHHHHHHHHHCCCHHHHH T ss_pred HHHHHHHCCCCCCHHHHH T ss_conf 999997612899899999 No 62 >2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633} Probab=99.67 E-value=1.2e-16 Score=104.72 Aligned_cols=119 Identities=9% Similarity=0.018 Sum_probs=70.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|++...+..+|.+++..|++++|+..|++++..+|++...+..++.++...+..+.|+..+.+++..+|.++.+++.+| T Consensus 36 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~la 115 (176) T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176) T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 88999999999999998088401589999988753234888899999999852118899989987761545678898889 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHH Q ss_conf 999872688899999999997489968--889999999975 Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCK--EAADGYQRCMMA 120 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~~l~~~~~~ 120 (123) .++...|++++|++.|.++++.+|++. .++..+..++.. T Consensus 116 ~~~~~~~~~~~A~~~l~~~l~~d~~~~~~~~~~~l~~~~~~ 156 (176) T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176) T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 99884027999999999999868987549999999999998 No 63 >2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633} Probab=99.67 E-value=2.9e-16 Score=102.75 Aligned_cols=116 Identities=12% Similarity=-0.000 Sum_probs=110.6 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998707888999999988531665302334445565332111100001110000000000113346899987 Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 86 (123) Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 86 (123) +.+...|..++..|+|++|+..|++++..+|+++++|..+|.|+..+|++++|+..+.+++..+|.....+..++..+.. T Consensus 7 e~ll~~A~~l~~~G~~~~A~~~~~~~l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (176) T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176) T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999879999999999999987889999999999999980884015899999887532348888999999998 Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 268889999999999748996888999999997542 Q T0595 87 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 87 ~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~ 122 (123) .+....|+..+++++..+|++.+++..++.++...+ T Consensus 87 ~~~~~~a~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 122 (176) T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVG 122 (176) T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC T ss_conf 521188999899877615456788988899988402 No 64 >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Probab=99.66 E-value=8.9e-17 Score=105.42 Aligned_cols=108 Identities=15% Similarity=0.046 Sum_probs=97.0 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 9999870788899999998853166530233444556533---21111000011100000--000001133468999872 Q T0595 13 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK---LLEFQLALKDCEECIQL--EPTFIKGYTRKAAALEAM 87 (123) Q Consensus 13 g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 87 (123) ++.++..++|++|.+.|+++++.+|.++.+++++|.|+.. .+++++|+..+++++.. +|....+|+++|.+|..+ T Consensus 5 ~n~~~~~edl~kAek~Y~~al~~~~~~~~~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~~~~~~~l~~La~~y~~~ 84 (152) T 1pc2_A 5 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 84 (152) T ss_dssp CSCSCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC T ss_conf 87245899999999999998710999999999999999875877789999999999874469941999999999999986 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 688899999999997489968889999999975 Q T0595 88 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 88 ~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) |++++|+++|+++++++|++.+|...+..+... T Consensus 85 g~~~~A~~~~~~aL~idP~n~qA~~l~~~I~~~ 117 (152) T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 117 (152) T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999999999999997693989999999999999 No 65 >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Probab=99.65 E-value=2.8e-16 Score=102.83 Aligned_cols=89 Identities=25% Similarity=0.374 Sum_probs=85.1 Q ss_pred HCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 316653-0233444556533211110000111000000000011334689998726888999999999974899688899 Q T0595 34 KRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 112 (123) Q Consensus 34 ~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 112 (123) .+||++ +++|+++|.++..+|++++|+.+++++++++|.++.+|+++|.++..+|++++|+.+|++++.++|+++.++. T Consensus 2 aldp~n~a~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~ 81 (91) T 1na3_A 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91) T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99996869999999999999689999999999998749987999987999999968999999999999984989899999 Q ss_pred HHHHHHHHHC Q ss_conf 9999997542 Q T0595 113 GYQRCMMAQY 122 (123) Q Consensus 113 ~l~~~~~~q~ 122 (123) .++.++..++ T Consensus 82 ~la~~~~~~G 91 (91) T 1na3_A 82 NLGNAKQKQG 91 (91) T ss_dssp HHHHHHHHHC T ss_pred HHHHHHHHCC T ss_conf 9999999766 No 66 >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Probab=99.65 E-value=2.9e-16 Score=102.70 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=85.0 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 89999999885316653023344455653321111000011100000000001133468999872688899999999997 Q T0595 23 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 102 (123) Q Consensus 23 ~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 102 (123) +.|++.|+++|..+|+++.+++++|.+++..|+++.|+.+|.++++++|+++.+|+++|.++..+|++++|++.|+++++ T Consensus 2 qa~~e~~e~~l~~~pd~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 81 (115) T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115) T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 89999999998709998999999999999859989999999999987431689999999999997899999999999997 Q ss_pred HCCCC--HHHHHHHHHH Q ss_conf 48996--8889999999 Q T0595 103 LDSSC--KEAADGYQRC 117 (123) Q Consensus 103 l~p~~--~~a~~~l~~~ 117 (123) ++|+. ..+...+... T Consensus 82 ~~~~~~d~~~~~~~~~~ 98 (115) T 2kat_A 82 AAQSRGDQQVVKELQVF 98 (115) T ss_dssp HHHHHTCHHHHHHHHHH T ss_pred HCCCCCCHHHHHHHHHH T ss_conf 47107319999999999 No 67 >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Probab=99.64 E-value=7.5e-17 Score=105.79 Aligned_cols=106 Identities=24% Similarity=0.250 Sum_probs=94.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..|..+|.+++..++|++|+..|+++|+++|+++.+|.++|.++..+|++++|+.+++++++++|.+..++..+ T Consensus 35 ~~p~~~~~~~~lg~~~~~l~~~~~Ai~~~~kal~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~a~~~l 114 (477) T 1wao_1 35 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114 (477) T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 09998999999999999839999999999999985899899999999999986999999999999998499979999999 Q ss_pred HHHH--HHHCCHHHHHHHHHHHHHHCCC Q ss_conf 8999--8726888999999999974899 Q T0595 81 AAAL--EAMKDYTKAMDVYQKALDLDSS 106 (123) Q Consensus 81 g~~~--~~~~~~~~A~~~~~~al~l~p~ 106 (123) +.+. ...+++++|+........+.+. T Consensus 115 ~~~~~~~~~~~~e~a~~~~~~~~~~~~~ 142 (477) T 1wao_1 115 QECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477) T ss_dssp HHHHHHHHHHHHCCC------CCSTTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 9999999978787542212343310100 No 68 >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Probab=99.64 E-value=1.6e-16 Score=104.12 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=93.6 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|..+..|.++|.++++.++|++|+..|+++|+++|+++.+|.++|.++..+|++++|+.+++++++++|.+..++..+ T Consensus 268 ~~p~~~~~~~nla~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 347 (370) T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370) T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 49306999999999999858889999999999986878899999999999983999999999999997199989999999 Q ss_pred HHHHHHHCCHHHHHHHHHH Q ss_conf 8999872688899999999 Q T0595 81 AAALEAMKDYTKAMDVYQK 99 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~ 99 (123) +.++..+++.+++.+.+.+ T Consensus 348 ~~~~~~~~~~~~aek~ly~ 366 (370) T 1ihg_A 348 LKVKQKIKAQKDKEKAAYA 366 (370) T ss_dssp HHHHHHHHHHHHHHHCCC- T ss_pred HHHHHHHHCHHHHHHHHHH T ss_conf 9999996078999999999 No 69 >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Probab=99.63 E-value=7e-16 Score=100.71 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=90.0 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) +||+++..|..+|.+++..|++++|+.+|+++|+++|.++.+|.++|.++..+|++++|+.++.++++++|.+..++..+ T Consensus 42 ~~p~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~l~~~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~~~p~~~~~~~~~ 121 (166) T 1a17_A 42 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121 (166) T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 29988899997738888714737799999999972755779899999999997899999999999997696999999999 Q ss_pred HHHH--HHHCCHHHHHHHHHHH Q ss_conf 8999--8726888999999999 Q T0595 81 AAAL--EAMKDYTKAMDVYQKA 100 (123) Q Consensus 81 g~~~--~~~~~~~~A~~~~~~a 100 (123) +.+. ...+.+..|+...... T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~ 143 (166) T 1a17_A 122 QECNKIVKQKAFERAIAGDEHK 143 (166) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCHHH T ss_conf 9999999989999987058888 No 70 >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Probab=99.63 E-value=2.5e-16 Score=103.05 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=107.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+.+..+..+|..+...+++++|+..+.+++..++ ..++.++|.++..+|++++|+..|.+|++++|+++.+|+++ T Consensus 115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497) T 1ya0_A 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497) T ss_dssp ----------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 9954599999867998768899999999999818899--99999999999986366799999999998788978999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 89998726888999999999974899688899999999754 Q T0595 81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) |.++...|++.+|+.+|.+++..+|.++.++..+..+.... T Consensus 193 g~l~~~~~~~~~A~~~y~ral~~~~~~~~a~~nl~~~~~~~ 233 (497) T 1ya0_A 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497) T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 99999879999999999999808999889999999999875 No 71 >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A Probab=99.60 E-value=4.3e-15 Score=96.57 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=99.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 71128999999999987078889999999885316-----653---023344455653321111000011100000---- Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL---- 69 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 69 (123) .|+.+..+.++|.++...|+|++|+.+|++++++. ++. +.++.++|.++..+|++++|+..+.+++++ T Consensus 39 ~p~~a~~l~~Lg~~y~~~g~~~~A~~~~~~aL~i~~~~~~~~~~~~~~~l~~l~~~y~~~g~~~~A~~~~~~al~~~~~~ 118 (283) T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283) T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 98999999999999998789999999999999999985489988999999999999998588999999787789999998 Q ss_pred ----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHC Q ss_conf ----0000011334689998726888999999999974-----899688---8999999997542 Q T0595 70 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL-----DSSCKE---AADGYQRCMMAQY 122 (123) Q Consensus 70 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l-----~p~~~~---a~~~l~~~~~~q~ 122 (123) +|....++.++|.++..++++++|+..|++++++ .|+++. +...++.++..+. T Consensus 119 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~g~~~~~~a~~~~~La~~~~~~g 183 (283) T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283) T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 44568069999998889998766437799867999999998628998789999998999998768 No 72 >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Probab=99.59 E-value=8.1e-16 Score=100.38 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=92.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 78889999999885316653023344455653321111000011100000000001133468999872688899999999 Q T0595 20 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 99 (123) Q Consensus 20 ~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (123) |++..|-..|.++.+++|++.+.++.+|.+++++|++++|+..|++++..+|.++.+|+++|.++..+|++++|+..|++ T Consensus 1 g~~~~~~~~~~~~~~i~~~~~~~l~~~a~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~Ai~~~~~ 80 (148) T 2vgx_A 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148) T ss_dssp -----CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 97768999999998689776999999999999869999999999999983998799999999999984986788999986 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 997489968889999999975429 Q T0595 100 ALDLDSSCKEAADGYQRCMMAQYN 123 (123) Q Consensus 100 al~l~p~~~~a~~~l~~~~~~q~n 123 (123) ++.++|.++.++..++.++...++ T Consensus 81 a~~~~p~~~~~~~~la~~~~~~~~ 104 (148) T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGE 104 (148) T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTC T ss_pred HHHCCCHHHHHHHHHHHHHHHCCC T ss_conf 660383278998998999997013 No 73 >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Probab=99.58 E-value=2.1e-15 Score=98.17 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=69.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001--1334 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK--GYTR 79 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~ 79 (123) ||+++.+|..+|..+...|+|++|+..|+++|+++|+++.+|.++|.++..+|++++|+.+|++++++.|.... ++.. T Consensus 3 ~P~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ai~~~p~~~~a~~~lg~~~~~~~~~~eA~~~~~kal~l~~~~~~~~~l~e 82 (100) T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100) T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 97959999999999999599999999999877248736999999999999968999999999999864875426999999 Q ss_pred HHHHHHHHC Q ss_conf 689998726 Q T0595 80 KAAALEAMK 88 (123) Q Consensus 80 lg~~~~~~~ 88 (123) ++.++.+.+ T Consensus 83 L~~a~~~a~ 91 (100) T 3ma5_A 83 LQDAKLKAE 91 (100) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999988 No 74 >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Probab=99.56 E-value=4.9e-15 Score=96.28 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=81.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..|..+|.++...|++++|+..|.+++.++|+++.+|..+|.++...|++++|+..++++++++|++..+|..+ T Consensus 41 ~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 120 (131) T 2vyi_A 41 LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120 (131) T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 49862999999858898816636789989999998313699999999998775799999999999997698989999999 Q ss_pred HHHHHHHCC Q ss_conf 899987268 Q T0595 81 AAALEAMKD 89 (123) Q Consensus 81 g~~~~~~~~ 89 (123) |.++.++++ T Consensus 121 ~~~~~~l~e 129 (131) T 2vyi_A 121 KIAELKLRE 129 (131) T ss_dssp HHHHHHHTT T ss_pred HHHHHHHCC T ss_conf 999998748 No 75 >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Probab=99.56 E-value=7e-15 Score=95.50 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=84.6 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000--1133 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYT 78 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~ 78 (123) .+|+++..+..+|..++..|++++|+.+|+++|+.+|+++.+|.++|.++..+|++++|+..|+++|+++|... .+.. T Consensus 14 ~~pd~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 93 (115) T 2kat_A 14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93 (115) T ss_dssp TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 09998999999999999859989999999999987431689999999999997899999999999997471073199999 Q ss_pred HHHHHHHHHCCHHHHHH Q ss_conf 46899987268889999 Q T0595 79 RKAAALEAMKDYTKAMD 95 (123) Q Consensus 79 ~lg~~~~~~~~~~~A~~ 95 (123) .++..+.++.+ .+|++ T Consensus 94 ~~~~~l~rl~r-~~A~e 109 (115) T 2kat_A 94 ELQVFLRRLAR-EDALE 109 (115) T ss_dssp HHHHHHHHHHH-HHHHH T ss_pred HHHHHHHHHCH-HHHHC T ss_conf 99999998378-97410 No 76 >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 Probab=99.54 E-value=8.7e-15 Score=95.00 Aligned_cols=87 Identities=23% Similarity=0.412 Sum_probs=71.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078889999999885316653023344455653321111000011100000000001133468 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) +|.....+..+|..+...+++++|+..|+++|+.+|+++.+|.++|.+++++|++++|+.+++++++++|+++.+|..+| T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 118 (125) T 1na0_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125) T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 95669999999999998288225799999999868998699997674766027399999999999986889799999999 Q ss_pred HHHHHHC Q ss_conf 9998726 Q T0595 82 AALEAMK 88 (123) Q Consensus 82 ~~~~~~~ 88 (123) .++.++| T Consensus 119 ~~~~~~G 125 (125) T 1na0_A 119 NAKQKQG 125 (125) T ss_dssp HHHHHHC T ss_pred HHHHHCC T ss_conf 9999774 No 77 >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Probab=99.54 E-value=6.2e-15 Score=95.76 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=78.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHH Q ss_conf 166530233444556533211110000111000000000011334689998726888999999999974899--688899 Q T0595 35 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS--CKEAAD 112 (123) Q Consensus 35 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~ 112 (123) .+|+++.+|+++|.++..+|++++|+..|+++|+++|+++.+|+++|.++..+|++++|+++|++++++.|+ +..++. T Consensus 2 ~~P~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ai~~~p~~~~a~~~lg~~~~~~~~~~eA~~~~~kal~l~~~~~~~~~l~ 81 (100) T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100) T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH T ss_conf 79795999999999999959999999999987724873699999999999996899999999999986487542699999 Q ss_pred HHHHHHHH Q ss_conf 99999975 Q T0595 113 GYQRCMMA 120 (123) Q Consensus 113 ~l~~~~~~ 120 (123) .+.++... T Consensus 82 eL~~a~~~ 89 (100) T 3ma5_A 82 ELQDAKLK 89 (100) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 78 >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Probab=99.52 E-value=2.7e-14 Score=92.39 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=77.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHH Q ss_conf 166530233444556533211110000111000000000011334689998726888999999999974899--688899 Q T0595 35 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS--CKEAAD 112 (123) Q Consensus 35 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~ 112 (123) +-|+++++|.++|.++..+|++++|+.+|+++++++|.++.+|.++|.++..+|++++|+.+|++++++.|+ +..++. T Consensus 1 ~~~~np~~~~~~G~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 80 (112) T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112) T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH T ss_conf 99899999999999999968999999999999871988899999988998602469999999999985799966799999 Q ss_pred HHHHHHHH Q ss_conf 99999975 Q T0595 113 GYQRCMMA 120 (123) Q Consensus 113 ~l~~~~~~ 120 (123) .++.++.. T Consensus 81 ~~g~~l~~ 88 (112) T 2kck_A 81 AKADALRY 88 (112) T ss_dssp HHHHHHTT T ss_pred HHHHHHHH T ss_conf 99999999 No 79 >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Probab=99.51 E-value=2.1e-14 Score=93.04 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=87.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..|.++|.++...|+|++|+.+|+++|+++|+++.+|.++|.++..+|++++|+..+.+++.++|....++... T Consensus 33 ~~p~~~~~~~n~g~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~~ 112 (281) T 2c2l_A 33 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112 (281) T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 38998999999999999848828899999999983986779998899999971456787899987653184218999999 Q ss_pred HHHHHHHCCHHHHHHH Q ss_conf 8999872688899999 Q T0595 81 AAALEAMKDYTKAMDV 96 (123) Q Consensus 81 g~~~~~~~~~~~A~~~ 96 (123) +......+........ T Consensus 113 ~~~~~~~~~~~~~~~~ 128 (281) T 2c2l_A 113 IPSALRIAKKKRWNSI 128 (281) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999887899 No 80 >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Probab=99.51 E-value=1.9e-14 Score=93.22 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=77.0 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH Q ss_conf 99885316653023344455653321111000011100000000001133468999872688899999999997489968 Q T0595 29 YTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 108 (123) Q Consensus 29 ~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 108 (123) +..+..++|++.+.++.+|.++..+|++++|+..++++++++|.++.+|+++|.++...|++++|+..|+++++++|+++ T Consensus 7 l~~~~~i~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 86 (142) T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142) T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH T ss_conf 99988779755999999999999868999999999999984999999999999999993999999999999997364580 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 88999999997542 Q T0595 109 EAADGYQRCMMAQY 122 (123) Q Consensus 109 ~a~~~l~~~~~~q~ 122 (123) .++..++.++..+. T Consensus 87 ~~~~~lg~~~~~~~ 100 (142) T 2xcb_A 87 RFPFHAAECHLQLG 100 (142) T ss_dssp HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCC T ss_conf 77877889987216 No 81 >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Probab=99.51 E-value=2.6e-13 Score=87.25 Aligned_cols=115 Identities=12% Similarity=0.028 Sum_probs=57.8 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 128999999999987078889999999885316653-0233444556533211110000111000000000011334689 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 82 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 82 (123) +....+...|..+...+++++|...|++++...|.+ ..+|..+|..+.+.|++++|+..+.++++.+|.++..|..+|. T Consensus 319 ~~~~l~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 398 (530) T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530) T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 12699999999984100579999999999863268728999999999764234899999999999838987999999999 Q ss_pred H-HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 9-98726888999999999974899688899999999 Q T0595 83 A-LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 83 ~-~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) + +...|+++.|.+.|+++++..|+++.++..+...+ T Consensus 399 ~e~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530) T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530) T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 9998678999999999999976899899999999999 No 82 >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Probab=99.50 E-value=2.7e-14 Score=92.42 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=73.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97112899999999998707888999999988531665302334445565332111100001110000000000113346 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) ++|+++..|..+|.+++..|++++|+..|+++|+++|+++.+|+++|.++..+|++++|+.+++++++++|+++.+...+ T Consensus 33 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 112 (118) T 1elw_A 33 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118) T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 68998999999999999848817668999999987989799999999999994999999999999997398989999999 Q ss_pred HHHH Q ss_conf 8999 Q T0595 81 AAAL 84 (123) Q Consensus 81 g~~~ 84 (123) +.+. T Consensus 113 ~~~~ 116 (118) T 1elw_A 113 QNME 116 (118) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9572 No 83 >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Probab=99.48 E-value=3.2e-14 Score=92.01 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=78.6 Q ss_pred CCCHHHHHHHHHHHHHHHH----------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----------HHHH Q ss_conf 9711289999999999870----------788899999998853166530233444556533211-----------1100 Q T0595 1 MNPDLALEEKNKGNECFQK----------GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-----------FQLA 59 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~----------~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~-----------~~~A 59 (123) +||+++.++.++|.++... +++++|+..|+++|+++|+++.+|+++|.++..+|+ +++| T Consensus 31 ~~P~~~~a~~~~g~~l~~~~~~~~~~~~~~~~~~Ai~~~~kai~l~P~~~~a~~nlg~a~~~~g~~~~~~~~a~~~~~~A 110 (158) T 1zu2_A 31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110 (158) T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 57001699999988888864443228888549999999999887634029999778999864065543310000100278 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 001110000000000113346899987268889 Q T0595 60 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTK 92 (123) Q Consensus 60 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 92 (123) +.+|+++|+++|++..++..++.+....+.+.+ T Consensus 111 ~~~f~kal~l~p~n~~~~~~L~~~~ka~e~~~e 143 (158) T 1zu2_A 111 TQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 143 (158) T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 888999998698939999999999998988999 No 84 >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A Probab=99.47 E-value=4.5e-14 Score=91.23 Aligned_cols=96 Identities=10% Similarity=-0.050 Sum_probs=89.8 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC Q ss_conf 99988531665302334445565332111100001110000000000113346899987268889999999999748996 Q T0595 28 HYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 107 (123) Q Consensus 28 ~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 107 (123) .+.+++..+|+..+.++.+|..++..|++++|+..|++++..+|.++.+|+.+|.++..++++++|+..|+++++++|++ T Consensus 24 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 103 (151) T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151) T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC T ss_conf 59998868976899999999999986999999998799998698879999999999998698157999999999876677 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 8889999999975429 Q T0595 108 KEAADGYQRCMMAQYN 123 (123) Q Consensus 108 ~~a~~~l~~~~~~q~n 123 (123) +.++..++.|+....+ T Consensus 104 ~~~~~~lg~~~~~~g~ 119 (151) T 3gyz_A 104 YTPVFHTGQCQLRLKA 119 (151) T ss_dssp CHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHCC T ss_conf 5999999999887455 No 85 >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Probab=99.47 E-value=4.8e-14 Score=91.10 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=87.4 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12899999999998707888999999988531665302334445565332111100001110000000000113346899 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 83 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 83 (123) ..+..+.++|.++...|+|++|+.+|+++|+++|+++.+|+++|.++..+|++++|+.+|.++++++|++..++..++.+ T Consensus 86 ~~~~~~~N~a~~~~~l~~~~~Ai~~~~~al~~~P~~~ka~~~~g~~~~~l~~~~~A~~~~~kal~ldP~n~~~~~~l~~~ 165 (198) T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 68999999999999858999999999986740887699999999999997899999999999997298989999999999 Q ss_pred HHHHCCHHH-HHHHHHHHHHHCC Q ss_conf 987268889-9999999997489 Q T0595 84 LEAMKDYTK-AMDVYQKALDLDS 105 (123) Q Consensus 84 ~~~~~~~~~-A~~~~~~al~l~p 105 (123) ...++...+ ....|+......| T Consensus 166 ~~~~~e~~~~ek~~yk~mf~~~~ 188 (198) T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDKGP 188 (198) T ss_dssp HHHHHHHHC-------------- T ss_pred HHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999998876685 No 86 >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Probab=99.47 E-value=4.1e-13 Score=86.20 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=97.4 Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11289999999999870788899999998853166530233444556-53321111000011100000000001133468 Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAAC-YTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) |+.+..|...|..+.+.|++++|+..|+++++.+|.++.+|..+|.+ +...|+++.|...++++++..|+++..|...+ T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~e~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~ 432 (530) T 2ooe_A 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 432 (530) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 87289999999997642348999999999998389879999999999998678999999999999976899899999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHH Q ss_conf 9998726888999999999974899688----8999999 Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCKE----AADGYQR 116 (123) Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~----a~~~l~~ 116 (123) ..+..+|++++|...|++++...|..++ +|..+.+ T Consensus 433 ~~~~~~g~~~~Ar~~~e~al~~~~~~~~~~~~lw~~~~~ 471 (530) T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530) T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 999888899999999999997389986889999999999 No 87 >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A Probab=99.45 E-value=1.2e-13 Score=88.93 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=83.2 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) .+..+.++|.++++.++|++|+.+++++|+++|+++.+|+++|.|++.++++++|+.+|+++++++|++..+...++.+. T Consensus 316 ~~~~~~Nla~~~~kl~~~~~Ai~~~~~al~~dp~n~ka~~~~g~~~~~~~~~~~A~~~~~kal~l~p~n~~~~~~l~~~~ 395 (457) T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99999889999998579999999999998758454999999999999868999999999999987899899999999999 Q ss_pred HHHCCHHHHH Q ss_conf 8726888999 Q T0595 85 EAMKDYTKAM 94 (123) Q Consensus 85 ~~~~~~~~A~ 94 (123) ..+..+.+.. T Consensus 396 ~~~~~~~~~e 405 (457) T 1kt0_A 396 KKAKEHNERD 405 (457) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 88 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Probab=99.43 E-value=2.1e-13 Score=87.70 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=82.6 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653023344455653321111000011100000000001133468999 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 84 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 84 (123) ....+.++|.++++.++|++|+.+++++|+++|+++.+|+++|.+++.+|+|++|+.+|+++++++|++..+...++.+. T Consensus 195 ~~~~~~Nla~~~~kl~~~~~Ai~~~~kaL~ldp~n~ka~~~~g~a~~~l~~~e~A~~~~~kal~l~P~n~~~~~~l~~l~ 274 (336) T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 79999899999998399999999999999866135999999999999869999999999999985899899999999999 Q ss_pred HHHCCHHHHH Q ss_conf 8726888999 Q T0595 85 EAMKDYTKAM 94 (123) Q Consensus 85 ~~~~~~~~A~ 94 (123) ..+.+..... T Consensus 275 ~~~~~~~~~e 284 (336) T 1p5q_A 275 QRIRRQLARE 284 (336) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 89 >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Probab=99.43 E-value=9.5e-14 Score=89.54 Aligned_cols=84 Identities=13% Similarity=-0.018 Sum_probs=74.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 30233444556533211110000111000000000011334689998726888999999999974899688899999999 Q T0595 39 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) ....++.+|..++..|++++|+..++++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++..++..++.++ T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 95 (121) T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121) T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99999999999999689999999999999878899999999729999948857677889999986979899999999999 Q ss_pred HHHC Q ss_conf 7542 Q T0595 119 MAQY 122 (123) Q Consensus 119 ~~q~ 122 (123) ..+. T Consensus 96 ~~~g 99 (121) T 1hxi_A 96 TNEH 99 (121) T ss_dssp HHHH T ss_pred HHCC T ss_conf 9959 No 90 >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Probab=99.43 E-value=7.2e-14 Score=90.18 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=88.1 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999870788899999998853166530233444556533211110000111000000000011334689998 Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 85 (123) Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 85 (123) ...+.++|.++++.++|++|+.+++++|+++|+++.+|+++|.+|..+|+|++|+.+++++++++|++..++..++.++. T Consensus 230 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~kal~ldP~n~~~~~~L~~l~~ 309 (338) T 2if4_A 230 NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338) T ss_dssp THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------- T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99998799999981475889999999986098647999999999998799999999999999839999999999999999 Q ss_pred HHCCHHHHHH-HHHHHHH Q ss_conf 7268889999-9999997 Q T0595 86 AMKDYTKAMD-VYQKALD 102 (123) Q Consensus 86 ~~~~~~~A~~-~~~~al~ 102 (123) .++++.++.. .|++.+. T Consensus 310 ~~~~~~~~ek~~y~kmf~ 327 (338) T 2if4_A 310 QEKALYQKQKEMYKGIFK 327 (338) T ss_dssp ------------------ T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 998699999999998755 No 91 >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A Probab=99.43 E-value=5.6e-13 Score=85.51 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=88.2 Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-----CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 112899999999998707888999999988531-----66---530233444556533211110000111000000---- Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKR-----NP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---- 70 (123) Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~-----~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 70 (123) |..+..+..+|.++...|++++|+.+|++++.+ ++ +...++.++|.++..+|++++|+..+.+++++. T Consensus 82 ~~~~~~l~~l~~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 161 (283) T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283) T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC T ss_conf 89999999999999985889999997877899999984456806999999888999876643779986799999999862 Q ss_pred ----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC Q ss_conf ----0000113346899987268889999999999748 Q T0595 71 ----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 104 (123) Q Consensus 71 ----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123) |....++.++|.++..+|++++|+..|++++.+. T Consensus 162 g~~~~~~a~~~~~La~~~~~~g~~~~A~~~~~kal~~~ 199 (283) T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283) T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 89987899999989999987689999999999999987 No 92 >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=99.42 E-value=6.7e-13 Score=85.10 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=50.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------ Q ss_conf 8999999999987078889999999885316653------023344455653-321111000011100000000------ Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYT-KLLEFQLALKDCEECIQLEPT------ 72 (123) Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~------~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~------ 72 (123) +..|.++|.++.+.+++++|+.+|++++++.|+. +.++.++|.++. ..+++++|+..+.+++++.+. T Consensus 77 a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~Ai~~y~~Al~l~~~~~~~~~ 156 (292) T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 99999999999875989999999999888887515528999999999899998734699999999999988774687687 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC Q ss_conf 00113346899987268889999999999748996 Q T0595 73 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 107 (123) Q Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 107 (123) ...++.++|.++..+|+|++|+..|++++...|.. T Consensus 157 ~~~~~~~~a~~~~~~g~y~~A~~~~~~a~~~~~~~ 191 (292) T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999998405999999999999865301 No 93 >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A Probab=99.42 E-value=1.2e-13 Score=88.94 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=76.3 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987078889999999885316653-------02334445565332111100001110000000000113 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 77 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 77 (123) .+.....+|..++++|+|.+|+..|++++.+.|.+ +.++.++|.++.++|++++|+..++++++++|+++.++ T Consensus 4 sa~dcf~lG~~~~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~~~~aL~~~P~~~~a~ 83 (104) T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH T ss_conf 59999999999999488999999999823101210000012357998888999984852889999999883296859999 Q ss_pred HHHHHHHHHHCCHHHHHH Q ss_conf 346899987268889999 Q T0595 78 TRKAAALEAMKDYTKAMD 95 (123) Q Consensus 78 ~~lg~~~~~~~~~~~A~~ 95 (123) .+++.+...+++.++|.+ T Consensus 84 ~nl~~~~~~l~~~~~a~k 101 (104) T 2v5f_A 84 GNLKYFEYIMAKEKDVNK 101 (104) T ss_dssp HHHHHHHHHHHHHCC--- T ss_pred HHHHHHHHHHHCHHHHHH T ss_conf 999999999806687655 No 94 >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Probab=99.42 E-value=3e-13 Score=86.95 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=62.3 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999987078889999999885316653-023344455653321111000011100000000001133468 Q T0595 11 NKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 11 ~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) ..+..++.+|+|++|+.+|+++|+++|++ +.+|++||.|+..+|++++|+.+|++||+++|+++.++...+ T Consensus 5 ~~~~~L~~qg~~~~Ai~~~~kal~l~P~~~~~a~~~lG~~~~~~g~~~~Ai~~~~kAl~l~P~~~~~~~~~~ 76 (99) T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKM 76 (99) T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 999999987899999999999998889989999998661866215299999999999973989999999999 No 95 >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Probab=99.39 E-value=2.4e-13 Score=87.45 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=61.1 Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11289999999999870788899999998853166530233444556533211110000111000000000011334689 Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 82 (123) Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 82 (123) |+.+..|..+|..+...|+|++|+.+|.+++. +..|.++|.++..+|+++.|+..+.++ |..++.+.++|. T Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~ka~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 215 (449) T 1b89_A 145 YNNVSNFGRLASTLVHLGEYQAAVDGARKANS-----TRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELIN 215 (449) T ss_dssp HHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-----HHHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCHHHHHHHHH T ss_conf 86599999999999987888999999987566-----799999999998645799999999867----065899999999 Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99872688899999999997489968889999999 Q T0595 83 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123) Q Consensus 83 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123) +|...|++++|+..|++++.++|.++.....++.+ T Consensus 216 ~y~~~g~~eeAi~~~e~al~~~~~~~~~~~~l~~~ 250 (449) T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 250 (449) T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99886889999999999985371021569999999 No 96 >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans} Probab=99.38 E-value=3.4e-13 Score=86.63 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=71.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 711289999999999870788899999998853166530233444556533211110000111000000000011 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 76 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 76 (123) +|+.+.+|.++|.+++..|+|++|+.+|+++|+++|+++.+|.++|.++..+|++++|++.+.+++...|.++.. T Consensus 23 ~p~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~eA~~~~~~~~~~~~~~~~~ 97 (117) T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97 (117) T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 941799999999999981863877899999999865569999864235553124999999999976128998999 No 97 >2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli} Probab=99.38 E-value=3.7e-13 Score=86.44 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=98.5 Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHH Q ss_conf 99870788899999998853166530233444556533211110000111000000000011334689998726---888 Q T0595 15 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK---DYT 91 (123) Q Consensus 15 ~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~ 91 (123) .+...+++++|+..|+++|+.+|+++.+|..+|.++..+|++++|+..+.+++..+|.+...+...|.++...+ ... T Consensus 19 ~~~~~~~~e~Ai~~l~~al~~~P~~~~~~~~lg~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (177) T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177) T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99858999999999999999889999999999999998599899999999999987644477764899999854532222 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 99999999997489968889999999975429 Q T0595 92 KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 123 (123) Q Consensus 92 ~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~n 123 (123) .+...+.+++..+|++..++..++.++..+++ T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 130 (177) T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQAN 130 (177) T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 10000000000131469999999999999699 No 98 >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.38 E-value=8e-13 Score=84.70 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=34.5 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999870788899999998853166530233444556533211110000111000000000011 Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 76 (123) Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 76 (123) +..+.++|.++...++|++|+..|+++|+++|+++.+|+++|.|+..+|+|++|+.+|+++++++|++..+ T Consensus 65 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~~~~~~~A~~~~~kal~l~p~~~~~ 135 (148) T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH T ss_conf 99983643333211222110001344441020354799988999999378599999999999858898999 No 99 >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=99.38 E-value=2.4e-12 Score=82.19 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=79.0 Q ss_pred HHHHHHHHHHHHHCCCC---CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHH Q ss_conf 88999999988531665---3023344455653---32111100001110000000000-11334689998726888999 Q T0595 22 YPQAMKHYTEAIKRNPK---DAKLYSNRAACYT---KLLEFQLALKDCEECIQLEPTFI-KGYTRKAAALEAMKDYTKAM 94 (123) Q Consensus 22 ~~~Ai~~~~~ai~~~p~---~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~ 94 (123) ..+.+..+.+.+...++ .....++.+.++. ..+++++|+..|+++++.+|.+. ++|+++|.+|..+|+|++|+ T Consensus 18 ~~e~l~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~Ai~~~~~~l~~~P~~~~~aly~Lg~~y~~lg~y~~A~ 97 (144) T 1y8m_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144) T ss_dssp CHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 69999999999986411220146788999998873216899999999999884253219999999999999846568999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 99999997489968889999999975 Q T0595 95 DVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 95 ~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) ++|+++++++|++.+++..++.+... T Consensus 98 ~~~~kaL~~~P~n~~A~~~~~~i~~~ 123 (144) T 1y8m_A 98 RYVDTLFEHERNNKQVGALKSMVEDK 123 (144) T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 99998986598969999999999999 No 100 >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=99.36 E-value=7.5e-12 Score=79.61 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=75.4 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ Q ss_conf 8999999999987078889999999885316653------0233444556533211110000111000000000------ Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------ 73 (123) Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 73 (123) +..|...|+.+...++|++|+.+|.+++.+.+.. +..|.++|.||..+|++++|+..+.+++++.+.. T Consensus 37 ~~~y~~aa~~y~~~~~~~~A~~~y~ka~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (292) T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292) T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 99999999999987899999999999999998869969999999999999987598999999999988888751552899 Q ss_pred HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHCCC Q ss_conf 011334689998-726888999999999974899 Q T0595 74 IKGYTRKAAALE-AMKDYTKAMDVYQKALDLDSS 106 (123) Q Consensus 74 ~~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~ 106 (123) ..++.++|.++. .++++++|+..|++++++.+. T Consensus 117 ~~~~~~l~~~~~~~~~~~e~Ai~~y~~Al~l~~~ 150 (292) T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 9999999899998734699999999999988774 No 101 >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Probab=99.36 E-value=3e-12 Score=81.66 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=83.5 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------- Q ss_conf 9711289999999999870788899999998853166530233444556533211110000111000------------- Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI------------- 67 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al------------- 67 (123) ++|+++..+.++|.++...|++++|+..|.++++..|+ +.++..+|.++.++|++++|+..+.++. T Consensus 56 ~k~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~l~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (449) T 1b89_A 56 IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 134 (449) T ss_dssp ------------------------------------------------------CHHHHTTTTTCC-------------- T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78998999999999998889999999999999763954-59999999999986899999999998569889876789999 Q ss_pred -------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf -------000000011334689998726888999999999974 Q T0595 68 -------QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 68 -------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) ...|.++..|..+|.++..+|++++|+++|++++.. T Consensus 135 ~~~~~aa~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~ka~~~ 177 (449) T 1b89_A 135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 177 (449) T ss_dssp --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCH T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH T ss_conf 9889998878865999999999999878889999999875667 No 102 >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Probab=99.35 E-value=1.5e-12 Score=83.27 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=86.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Q ss_conf 971128999999999987078889999999885316653023344455653321111000011100000000001----- Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK----- 75 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----- 75 (123) +||.++.++...|..++..|+|++|+..|+++|+.+|+.......++.+....|++++|.+.|++|++..+.++. T Consensus 9 ~~~~~p~~~~~~a~~l~~~~~y~~a~~l~~~al~~~p~~~lw~~yl~~~~~~~~~~~~a~~~~e~al~~~~~~~~~~~~~ 88 (493) T 2uy1_A 9 VELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493) T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 69799999999999999868999999999999876999899999999999857989999999999997485471342999 Q ss_pred --HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf --1334689998726888999999999974899688899 Q T0595 76 --GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 112 (123) Q Consensus 76 --~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 112 (123) .+..+|..+...+++++|...|++++.++|++..... T Consensus 89 ~~~~~~~~~~~~~~~~~~~a~~~y~~al~~~~~~~~~~~ 127 (493) T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELW 127 (493) T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHH T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 999999999999836499999999999864864399999 No 103 >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Probab=99.34 E-value=1.5e-12 Score=83.21 Aligned_cols=86 Identities=15% Similarity=0.026 Sum_probs=59.1 Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11289999999999870788899999998853166530233444556533211110000111000000000011334689 Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 82 (123) Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 82 (123) |+....+..+|..+..+++|++|+.+|.+|++++|++..+|+++|.++..+|++.+|+.+|.+++..+|.++.++.+++. T Consensus 149 ~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~l~~~~~~~~~A~~~y~ral~~~~~~~~a~~nl~~ 228 (497) T 1ya0_A 149 YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 89999999999999986366799999999998788978999999999998799999999999998089998899999999 Q ss_pred HHHHHC Q ss_conf 998726 Q T0595 83 ALEAMK 88 (123) Q Consensus 83 ~~~~~~ 88 (123) ++.... T Consensus 229 ~~~~~~ 234 (497) T 1ya0_A 229 ALSKAL 234 (497) T ss_dssp HHHHHT T ss_pred HHHHHH T ss_conf 998753 No 104 >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1} Probab=99.33 E-value=1e-11 Score=78.90 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=79.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 971128999999999987078889999999885316653------0233444556533211110000111000000---- Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLE---- 70 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 70 (123) .+|+.+.++..+|.++..+|+|++|+.+|++++.+.|.. ..++.++|.++...|++++|+..+.+++... T Consensus 21 ~~~~~~~a~~~LG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~a~~~~~~al~~~~~~~ 100 (203) T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203) T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCCC T ss_conf 89527999999999999859820012321121122322222589999984500555303530568888787764101222 Q ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC Q ss_conf -------------------------------------------000011334689998726888999999999974899 Q T0595 71 -------------------------------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 106 (123) Q Consensus 71 -------------------------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 106 (123) +..+.++.++|.++..+|++++|+..|++++++.++ T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~l~~~ 179 (203) T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203) T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 2333221000001357887766642001000000121102444310245478999999968999999999999999998 No 105 >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Probab=99.31 E-value=3.3e-12 Score=81.45 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=61.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 44556533211110000111000000000-011334689998726888999999999974899688899 Q T0595 45 NRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 112 (123) Q Consensus 45 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 112 (123) +.+..++.+|+|++|+..|+++|+++|.+ +.+|+++|.++..+|++++|+++|++|++++|+++.+.. T Consensus 5 ~~~~~L~~qg~~~~Ai~~~~kal~l~P~~~~~a~~~lG~~~~~~g~~~~Ai~~~~kAl~l~P~~~~~~~ 73 (99) T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99) T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 999999987899999999999998889989999998661866215299999999999973989999999 No 106 >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=99.31 E-value=1.3e-12 Score=83.53 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHHH---HCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999987---0788899999998853166530-23344455653321111000011100000000001133468 Q T0595 6 ALEEKNKGNECFQ---KGDYPQAMKHYTEAIKRNPKDA-KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 81 (123) Q Consensus 6 a~~~~~~g~~~~~---~~~~~~Ai~~~~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 81 (123) .....+.+..+.. .+++++|+..|+++++.+|.+. ++|+++|.+|.++|+|++|+.+++++|+++|++..++..++ T Consensus 39 ~~~~f~~~~~l~~~~~~~~~~~Ai~~~~~~l~~~P~~~~~aly~Lg~~y~~lg~y~~A~~~~~kaL~~~P~n~~A~~~~~ 118 (144) T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144) T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 46788999998873216899999999999884253219999999999999846568999999989865989699999999 Q ss_pred HHHHHHC Q ss_conf 9998726 Q T0595 82 AALEAMK 88 (123) Q Consensus 82 ~~~~~~~ 88 (123) .++.+++ T Consensus 119 ~i~~~~~ 125 (144) T 1y8m_A 119 MVEDKIQ 125 (144) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999986 No 107 >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1} Probab=99.30 E-value=3.7e-12 Score=81.23 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=84.4 Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCC Q ss_conf 9870788899999998853166530233444556533211110000111000000000------0113346899987268 Q T0595 16 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKGYTRKAAALEAMKD 89 (123) Q Consensus 16 ~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~ 89 (123) +|..++|+.|...+++++..+|..+.+++++|.++..+|++++|+..+++++++.|.. ..++.++|.++...++ T Consensus 2 a~~~~dy~~A~~~~~~~l~~~~~~~~a~~~LG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 81 (203) T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203) T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC T ss_pred CHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCC T ss_conf 62317999999999999778952799999999999985982001232112112232222258999998450055530353 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 88999999999974899 Q T0595 90 YTKAMDVYQKALDLDSS 106 (123) Q Consensus 90 ~~~A~~~~~~al~l~p~ 106 (123) +++|+..+++++.+.+. T Consensus 82 ~~~a~~~~~~al~~~~~ 98 (203) T 3gw4_A 82 WDAARRCFLEERELLAS 98 (203) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCC T ss_conf 05688887877641012 No 108 >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Probab=99.29 E-value=1.7e-12 Score=82.95 Aligned_cols=89 Identities=16% Similarity=0.069 Sum_probs=80.2 Q ss_pred CCCHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9711289999999999870---78889999999885316--653023344455653321111000011100000000001 Q T0595 1 MNPDLALEEKNKGNECFQK---GDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 75 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~---~~~~~Ai~~~~~ai~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 75 (123) +||+++..+++.|.++... +++++||..|++++..+ |..+++|+++|.+|..+|++++|+.+++++++++|+++. T Consensus 30 ~~p~~~~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~~~~~~~ly~La~~y~~~g~~~~A~~~~~~~L~~~P~~~~ 109 (126) T 1nzn_A 30 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126) T ss_dssp HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH T ss_conf 09998899999999999828755899999999999862589855999999999999834378999999999976929799 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 13346899987268 Q T0595 76 GYTRKAAALEAMKD 89 (123) Q Consensus 76 ~~~~lg~~~~~~~~ 89 (123) ++..++.+...+++ T Consensus 110 A~~~~~~i~~~~~r 123 (126) T 1nzn_A 110 AKELERLIDKAMKK 123 (126) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999873 No 109 >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Probab=99.28 E-value=6.8e-11 Score=74.61 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=72.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112899999999998707888999999988531665302-334445565332111100001110000000000113346 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) +|+....|...+......|++++|...|++++...|.+.. +|...+......|+.+.|...+.++++..|..+..|... T Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~y~~~~~~~~~~~~ar~~~~~al~~~p~~~~~~~~~ 174 (308) T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308) T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99879999999999998086888999999999872256089999999999983883789999999997389974999999 Q ss_pred HHH-HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 899-9872688899999999997489968889999999975 Q T0595 81 AAA-LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 81 g~~-~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) |.+ +...|+.+.|...|++++...|++...+..+.+.+.. T Consensus 175 a~~e~~~~~~~~~A~~i~e~al~~~p~~~~~w~~y~~~~~~ 215 (308) T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308) T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99998767689999999998998689979999999999988 No 110 >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens} Probab=99.25 E-value=6.8e-12 Score=79.84 Aligned_cols=106 Identities=9% Similarity=-0.018 Sum_probs=93.0 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999870788899999998853166530---------233444556533211110000111000000000011334 Q T0595 9 EKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 9 ~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) ....+..+...|.|++|.......+...|.++ +++..+|.++...|+|++|+..|+++++.++ T Consensus 23 ~l~~~~~l~~~G~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~y~~A~~~~~~al~~~~-------- 94 (167) T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK-------- 94 (167) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------- T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------- T ss_conf 999999999865765699999999876025976428989999999999999986679999999999999619-------- Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 68999872688899999999997489968889999999975429 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 123 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~n 123 (123) |.++..+|++++|+..|+++++++|++.+++..++.|+..+.+ T Consensus 95 -~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 137 (167) T 3ffl_A 95 -ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ 137 (167) T ss_dssp -CC--------------------CCCCHHHHHHHHHHHHHHTTC T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC T ss_conf -9999987779999999999987493569999999999998399 No 111 >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Probab=99.23 E-value=4.4e-12 Score=80.82 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=59.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 0233444556533211110000111000000000011334689998726888999999999974899688899999999 Q T0595 40 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) +.-+-++|..++..|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+..++++++++|+++..+..++.++ T Consensus 4 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 82 (131) T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 9999999999998689999999999998709887999996789998747699999999999974924716568999999 No 112 >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Probab=99.20 E-value=1.5e-10 Score=72.74 Aligned_cols=94 Identities=12% Similarity=-0.061 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998707888999999988531665302334445565332111100001110000000000113346899987 Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 86 (123) Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 86 (123) ..|...|..+...|++++|+..|.++++.+|++...+..+|..+...|+++.|+..++++++.+|.++..|..+|.++.. T Consensus 287 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 366 (493) T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493) T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999999999829967999999999863987899999999999875999999999999998699959999999999874 Q ss_pred HCCHHHHHHHHHHH Q ss_conf 26888999999999 Q T0595 87 MKDYTKAMDVYQKA 100 (123) Q Consensus 87 ~~~~~~A~~~~~~a 100 (123) .|+++.|...|+++ T Consensus 367 ~~~~~~a~~~~~~~ 380 (493) T 2uy1_A 367 IGDEENARALFKRL 380 (493) T ss_dssp HTCHHHHHHHHHHS T ss_pred CCCHHHHHHHHHHH T ss_conf 79899999999861 No 113 >2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A Probab=99.20 E-value=1e-11 Score=78.93 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=77.8 Q ss_pred HHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHH Q ss_conf 8899999998853166---530233444556533---2111100001110000000000-11334689998726888999 Q T0595 22 YPQAMKHYTEAIKRNP---KDAKLYSNRAACYTK---LLEFQLALKDCEECIQLEPTFI-KGYTRKAAALEAMKDYTKAM 94 (123) Q Consensus 22 ~~~Ai~~~~~ai~~~p---~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~ 94 (123) +.++++.+.+.+...+ .+....++.|.|+.+ .+++++|+..++++++.+|.+. ++|+++|.+|..+|+|++|+ T Consensus 18 ~~e~l~~~~~~~~~e~~~~~s~q~~f~~a~~L~~s~~~~d~~~Ai~~l~~~l~~~p~~~~d~ly~Lg~~y~~~~~y~~A~ 97 (129) T 2pqr_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (129) T ss_dssp CHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH T ss_conf 99999999999987047887688899999999867987689999999999998797868999999999999948989999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 9999999748996888999999997 Q T0595 95 DVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 95 ~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) .+|+++++++|++.++......+.. T Consensus 98 ~~~~~~L~~~P~~~~a~~l~~~i~~ 122 (129) T 2pqr_A 98 RYVDTLFEHERNNKQVGALKSMVED 122 (129) T ss_dssp HHHHC-------------------- T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 9999999759398999999999999 No 114 >2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A Probab=99.19 E-value=2.6e-11 Score=76.76 Aligned_cols=85 Identities=13% Similarity=0.018 Sum_probs=76.1 Q ss_pred HHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987---0788899999998853166530-2334445565332111100001110000000000113346 Q T0595 5 LALEEKNKGNECFQ---KGDYPQAMKHYTEAIKRNPKDA-KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 80 (123) Q Consensus 5 ~a~~~~~~g~~~~~---~~~~~~Ai~~~~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 80 (123) .+.+..+.|..+.+ .+++++||..|+++++.+|.+. ++|+++|.+|.++|+|++|+.+++++|+++|++..+...+ T Consensus 38 s~q~~f~~a~~L~~s~~~~d~~~Ai~~l~~~l~~~p~~~~d~ly~Lg~~y~~~~~y~~A~~~~~~~L~~~P~~~~a~~l~ 117 (129) T 2pqr_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (129) T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHC--------------- T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 68889999999986798768999999999999879786899999999999994898999999999997593989999999 Q ss_pred HHHHHHHCC Q ss_conf 899987268 Q T0595 81 AAALEAMKD 89 (123) Q Consensus 81 g~~~~~~~~ 89 (123) +.+...+++ T Consensus 118 ~~i~~~~~k 126 (129) T 2pqr_A 118 SMVEDKIQK 126 (129) T ss_dssp --------- T ss_pred HHHHHHHHH T ss_conf 999999863 No 115 >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A Probab=99.19 E-value=5.2e-11 Score=75.18 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=73.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 30233444556533211110000111000000000-------01133468999872688899999999997489968889 Q T0595 39 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123) Q Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123) +++-.+.+|.+++++|+|++|+..+.+++.+.|.. +.++.++|.++..+|++++|+..|++++.++|+++.+. T Consensus 4 sa~dcf~lG~~~~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~~~~aL~~~P~~~~a~ 83 (104) T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH T ss_conf 59999999999999488999999999823101210000012357998888999984852889999999883296859999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999754 Q T0595 112 DGYQRCMMAQ 121 (123) Q Consensus 112 ~~l~~~~~~q 121 (123) ..++.+.... T Consensus 84 ~nl~~~~~~l 93 (104) T 2v5f_A 84 GNLKYFEYIM 93 (104) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 116 >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Probab=99.18 E-value=1.7e-11 Score=77.81 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=77.2 Q ss_pred CCCHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9711289999999999870---78889999999885316--653023344455653321111000011100000000001 Q T0595 1 MNPDLALEEKNKGNECFQK---GDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 75 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~---~~~~~Ai~~~~~ai~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 75 (123) ++|.++..+.+.|..+... +++++|+..|++++..+ |+++++|+++|.+|.++|++++|+.+++++++++|+++. T Consensus 27 ~~~~~~~~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~~~~~~~l~~La~~y~~~g~~~~A~~~~~~aL~idP~n~q 106 (152) T 1pc2_A 27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152) T ss_dssp TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH T ss_conf 09999999999999998758777899999999998744699419999999999999869999999999999976939899 Q ss_pred HHHHHHHHHHH Q ss_conf 13346899987 Q T0595 76 GYTRKAAALEA 86 (123) Q Consensus 76 ~~~~lg~~~~~ 86 (123) +...+..+..+ T Consensus 107 A~~l~~~I~~~ 117 (152) T 1pc2_A 107 AKELERLIDKA 117 (152) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 117 >3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Probab=99.18 E-value=3.3e-11 Score=76.23 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=47.8 Q ss_pred CCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71128999999999987078---889999999885316653023344455653321111000011100000000001 Q T0595 2 NPDLALEEKNKGNECFQKGD---YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 75 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~---~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 75 (123) ||.+|..+..+|..++...+ +++|+..|+++|+++|+++.+|+++|.++++.|+|++|+..|+++|+++|.+.. T Consensus 2 n~~~A~~l~~~A~aL~~~~~~~~~~eA~~~l~kAl~~dP~~~~a~~~lg~~~~~~g~y~~Ai~~~~~~L~~~p~~~~ 78 (93) T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93) T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC T ss_conf 71479999999999999818998799999999998558676765888979999847999999999999844899825 No 118 >3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Probab=99.14 E-value=7.9e-11 Score=74.26 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=71.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 166530233444556533211---11000011100000000001133468999872688899999999997489968889 Q T0595 35 RNPKDAKLYSNRAACYTKLLE---FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123) Q Consensus 35 ~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123) .+|.++..+..+|.++...++ +++|+..++++++++|.++.+|+.+|.+++..|+|++|+.+|+++|+++|.+.+.. T Consensus 1 ~n~~~A~~l~~~A~aL~~~~~~~~~~eA~~~l~kAl~~dP~~~~a~~~lg~~~~~~g~y~~Ai~~~~~~L~~~p~~~~r~ 80 (93) T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93) T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH T ss_conf 97147999999999999981899879999999999855867676588897999984799999999999984489982599 Q ss_pred HHHHHH Q ss_conf 999999 Q T0595 112 DGYQRC 117 (123) Q Consensus 112 ~~l~~~ 117 (123) ..+..+ T Consensus 81 ~i~~~I 86 (93) T 3bee_A 81 TIIESI 86 (93) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 119 >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Probab=99.11 E-value=3.7e-10 Score=70.75 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=38.7 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH Q ss_conf 999999870788899999998853166------530233444556533211110000111000000------00001133 Q T0595 11 NKGNECFQKGDYPQAMKHYTEAIKRNP------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE------PTFIKGYT 78 (123) Q Consensus 11 ~~g~~~~~~~~~~~Ai~~~~~ai~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~ 78 (123) ..+..++..+++++|+.+|.+++.+.. ....++.++|.++.++|+|++|+..+++++.+. +....++. T Consensus 120 ~~~~~~~~~~~~~~Ai~~y~~A~~i~~~~~~~~~~~~~~~~~a~~~~~~~~y~eA~~~~~~al~i~~~~~~~~~~~~~~~ 199 (307) T 2ifu_A 120 DRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307) T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 88899998750899999899999999985996457788766899998737899999999999999998678499999999 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 4689998726888999999999974 Q T0595 79 RKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 79 ~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) .+|.++..+|++..|..+|++++.+ T Consensus 200 ~l~~~~l~~gd~~~A~~~~~~~~~i 224 (307) T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESYSI 224 (307) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTS T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 9999997659999999999998546 No 120 >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Probab=99.11 E-value=1.1e-09 Score=68.34 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=98.3 Q ss_pred CCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112-8999999999987078889999999885316653023344455653-3211110000111000000000011334 Q T0595 2 NPDL-ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 2 nP~~-a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) .|.. ...|...+....+.|+++.|...|+++++..|.++.+|...|.... ..|+.+.|...++++++..|.++..|.. T Consensus 129 ~~~~~~~~w~~y~~~~~~~~~~~~ar~~~~~al~~~p~~~~~~~~~a~~e~~~~~~~~~A~~i~e~al~~~p~~~~~w~~ 208 (308) T 2ond_A 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 208 (308) T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 22560899999999999838837899999999973899749999999999876768999999999899868997999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHH Q ss_conf 68999872688899999999997489968----88999999 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCK----EAADGYQR 116 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~~~l~~ 116 (123) .+......|+++.|...|++++...|.++ .++..+.+ T Consensus 209 y~~~~~~~g~~~~AR~~ferai~~~~~~~~~~~~iw~~~~~ 249 (308) T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308) T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999887999999999999998188760379999999999 No 121 >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Probab=99.10 E-value=4.1e-10 Score=70.49 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=69.8 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH Q ss_conf 8999999999987078889999999885316653------023344455653321111000011100000-----00000 Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFI 74 (123) Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 74 (123) +..|...|..+...|+|++|+.+|.+++++.+.. +..+.++|.++..+|++++|+..+.+++.+ +|... T Consensus 36 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 115 (307) T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 99999999999987899999999999999888626819999999999999998799899999899999999860020688 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 11334689998726888999999999974 Q T0595 75 KGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) ..+++.+..+...++++.|+..|++++++ T Consensus 116 a~~l~~~~~~~~~~~~~~Ai~~y~~A~~i 144 (307) T 2ifu_A 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAV 144 (307) T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988889999875089999989999999 No 122 >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1 Probab=99.07 E-value=8.4e-10 Score=68.87 Aligned_cols=110 Identities=12% Similarity=-0.042 Sum_probs=70.9 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 971128999999999987078889999999885316653023344455653321111000-0111000000000011334 Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL-KDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~ 79 (123) ++|+++..+..+|..+...|++++|+..|+++++++|++...+..++.+....+...++. ......+...|.....+.. T Consensus 26 ~~P~~~~~r~~La~ll~~~G~~~~A~~~l~~a~~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~ 105 (273) T 1zbp_A 26 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV 105 (273) T ss_dssp TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 68999999999999999879999999999988986966258899999999872668999999987635239767999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 6899987268889999999999748996888 Q T0595 80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEA 110 (123) Q Consensus 80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a 110 (123) .+.+....|++++|...+.++++..|..... T Consensus 106 ~a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 136 (273) T 1zbp_A 106 SFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273) T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH T ss_conf 9999997889899999999986338876156 No 123 >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1 Probab=99.04 E-value=6.7e-11 Score=74.64 Aligned_cols=104 Identities=19% Similarity=0.148 Sum_probs=82.0 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99999870788899999998853166530233444556533211110000111000000000011334689998726888 Q T0595 12 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 91 (123) Q Consensus 12 ~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 91 (123) .+...+..|++++|+..|+++|+.+|+++..+..+|.++...|++++|+..++++++++|++..++..++.+....+... T Consensus 3 q~~~aL~~G~~~~A~~~l~~av~~~P~~~~~r~~La~ll~~~G~~~~A~~~l~~a~~l~P~~~~~~~~l~~l~~~~~~~~ 82 (273) T 1zbp_A 3 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82 (273) T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH T ss_conf 79999987899999999999998689999999999999998799999999999889869662588999999998726689 Q ss_pred HHHHHH-HHHHHHCCCCHHHHHHHH Q ss_conf 999999-999974899688899999 Q T0595 92 KAMDVY-QKALDLDSSCKEAADGYQ 115 (123) Q Consensus 92 ~A~~~~-~~al~l~p~~~~a~~~l~ 115 (123) ++.... ...+...|+........+ T Consensus 83 ~~~~~~~~~~~~~~p~~~~~~l~~a 107 (273) T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSF 107 (273) T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999998763523976799999999 No 124 >2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8 Probab=99.02 E-value=3e-10 Score=71.23 Aligned_cols=82 Identities=11% Similarity=0.014 Sum_probs=65.6 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 128999999999987078889999999885316653-----------023344455653321111000011100000000 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 72 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 72 (123) ..+..+.++|.+++..|+|++|+..|+++|.+.|.. ..+++++|.++..+|++++|+.+|++++++.|. T Consensus 55 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~g~~~~Ai~~~~~Al~l~~~ 134 (159) T 2hr2_A 55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 78999999999999839899999999999997665065510101368899965999999718869999999999986564 Q ss_pred HHHHHHHHHHHHH Q ss_conf 0011334689998 Q T0595 73 FIKGYTRKAAALE 85 (123) Q Consensus 73 ~~~~~~~lg~~~~ 85 (123) .....-.+..... T Consensus 135 ~~~~~~~~~~~~~ 147 (159) T 2hr2_A 135 RKGETPGKERMME 147 (159) T ss_dssp CCSCCTTHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 1400389999999 No 125 >3mek_A SET and MYND domain-containing protein 3; histone methyltransferase, zinc finger MYND domain-containing protein 1, histone H3, DI-methylation; HET: SAM; 2.10A {Homo sapiens} Probab=98.76 E-value=2.2e-07 Score=56.17 Aligned_cols=113 Identities=14% Similarity=0.019 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H Q ss_conf 99999999998707888999999988531665--------3023344455653321111000011100000--------0 Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK--------DAKLYSNRAACYTKLLEFQLALKDCEECIQL--------E 70 (123) Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~ 70 (123) ......+......+++++|+..++++++.... ....+..++.++..+|++++|+..+.+++++ + T Consensus 288 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 367 (429) T 3mek_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 55432357888620289999999999999887417632334999999999998778999999999999999998749998 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHH Q ss_conf 000011334689998726888999999999974-----8996888999999997 Q T0595 71 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMM 119 (123) Q Consensus 71 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l-----~p~~~~a~~~l~~~~~ 119 (123) |.....+..+|.++..+|++.+|+..+++++.+ .++++...+.+.++.. T Consensus 368 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~i~~~~~G~~h~~~~~~~~~L~~ 421 (429) T 3mek_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE 421 (429) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 999999999999999878999999999999999999809998699999999999 No 126 >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix- turn-helix, repeat protein; 2.00A {Helicobacter pylori 26695} SCOP: a.118.18.1 Probab=98.54 E-value=1.5e-06 Score=51.82 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=82.3 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1289999999999870788899999998853166530233444556533----211110000111000000000011334 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTR 79 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123) .++.+++.+|..++..|||++|+.+|+++.+. +++.+++++|.+|.. ..++..|+..+.++...+ ++.+.+. T Consensus 4 ~~~~al~~lG~~~~~~~d~~~A~~~~~kaa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~a~~~~~~a~~~~--~~~a~~~ 79 (273) T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273) T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC--CHHHHHH T ss_conf 79999999999999878999999999999978--9999999999999849996333999999999875325--1166652 Q ss_pred HHHHHHH----HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 6899987----2688899999999997489968889999999 Q T0595 80 KAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123) Q Consensus 80 lg~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123) ++.++.. ..+...|...++++.... +..+...++.+ T Consensus 80 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~L~~~ 119 (273) T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGI 119 (273) T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH T ss_conf 13300268775210788887899998864--55788630156 No 127 >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646} Probab=98.28 E-value=4.9e-06 Score=49.15 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=82.6 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 2899999999998707888999999988531665-------30233444556533211110000111000000000---- Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK-------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---- 73 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---- 73 (123) ....+...|..++..+++..++..+++++..... ....+.++|.++...|++++|+..+.+++++.+.. T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~a~~~~~~ai~~~~~~~~~~ 233 (293) T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 77887666788898877999999999999999874530778998999998888887789999999999999999869999 Q ss_pred --HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH Q ss_conf --011334689998726-888999999999974 Q T0595 74 --IKGYTRKAAALEAMK-DYTKAMDVYQKALDL 103 (123) Q Consensus 74 --~~~~~~lg~~~~~~~-~~~~A~~~~~~al~l 103 (123) +..++.+|.++..++ +.++|.+.|++|+.+ T Consensus 234 ~l~~~~~~~g~~~~~~~~~~~~a~~~~~ka~~i 266 (293) T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293) T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 999999999999998099899999999999999 No 128 >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Probab=98.25 E-value=6.8e-06 Score=48.38 Aligned_cols=93 Identities=10% Similarity=0.077 Sum_probs=36.8 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------- Q ss_conf 8899999998853166530233444556533211110-0001110000000000113346899987268----------- Q T0595 22 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL-ALKDCEECIQLEPTFIKGYTRKAAALEAMKD----------- 89 (123) Q Consensus 22 ~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------- 89 (123) +++-+...+++++.||.|..+|..|..+....+...+ -++...+.|+.++.+..+|..++.++..+.. T Consensus 125 ~~~El~~~~~~l~~d~rN~h~W~yR~~v~~~~~~~~~~El~~~~~~i~~~~sn~Sawh~R~~ll~~l~~~~~~~~~~~~~ 204 (567) T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567) T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 89999999999853820057799999999862578699999999998708620259999999998732455532000124 Q ss_pred ---HHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf ---8899999999997489968889999 Q T0595 90 ---YTKAMDVYQKALDLDSSCKEAADGY 114 (123) Q Consensus 90 ---~~~A~~~~~~al~l~p~~~~a~~~l 114 (123) ..+-++....++..+|++..+|..+ T Consensus 205 ~~~~~~El~~v~~ai~~~P~~~S~W~y~ 232 (567) T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567) T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 9999999999999986298875541330 No 129 >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Probab=98.17 E-value=3.7e-05 Score=44.56 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=67.1 Q ss_pred CCCHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 971128999999999987078----------8899999998853166530233444556533211--1100001110000 Q T0595 1 MNPDLALEEKNKGNECFQKGD----------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--FQLALKDCEECIQ 68 (123) Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~----------~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~ 68 (123) +||+...+|+.|..+....+. ++..+...+.++..+|++..+|..|..+...++. ++.-+..|.++++ T Consensus 58 ~np~~~t~Wn~Rr~~l~~~~~~~~~~~~~~~~~~El~~~~~~l~~~pK~y~~W~hR~w~~~~~~~~~~~~El~~~~~~l~ 137 (567) T 1dce_A 58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137 (567) T ss_dssp HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH T ss_pred HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 79276789999999998523345757788999999999999998589846667999999987464128999999999985 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 000000113346899987268889-99999999974899688899999999 Q T0595 69 LEPTFIKGYTRKAAALEAMKDYTK-AMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 69 ~~p~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) .||.+..+|..+..+....+...+ -++.-.+.++.++.+-.||.....++ T Consensus 138 ~d~rN~h~W~yR~~v~~~~~~~~~~El~~~~~~i~~~~sn~Sawh~R~~ll 188 (567) T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 188 (567) T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 382005779999999986257869999999999870862025999999999 No 130 >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynthesis, protein binding; 2.50A {Pseudomonas fluorescens} Probab=98.14 E-value=1.5e-05 Score=46.58 Aligned_cols=91 Identities=15% Similarity=0.011 Sum_probs=40.6 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHH Q ss_conf 788899999998853166530233444556533----2111100001110000000000113346899987----26888 Q T0595 20 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYT 91 (123) Q Consensus 20 ~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~ 91 (123) +++++|+.+|+++... .++.+..++|.+|.. ..++.+|+..++++.+.+| .+.+++|.+|.. ..++. T Consensus 265 ~d~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~~~---~a~~~Lg~~y~~G~~~~~d~~ 339 (452) T 3e4b_A 265 GDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREV---AADYYLGQIYRRGYLGKVYPQ 339 (452) T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTCH---HHHHHHHHHHHTTTTSSCCHH T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC---HHHHHHHHHHHCCCCCCCCHH T ss_conf 6899999999999988--89999999999998499888788999999987621685---999999999982999877999 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999997489968889999999 Q T0595 92 KAMDVYQKALDLDSSCKEAADGYQRC 117 (123) Q Consensus 92 ~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123) +|+..|+++.+. .++.+...++.+ T Consensus 340 ~A~~~~~~AA~~--g~~~A~~~lg~~ 363 (452) T 3e4b_A 340 KALDHLLTAARN--GQNSADFAIAQL 363 (452) T ss_dssp HHHHHHHHHHTT--TCTTHHHHHHHH T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHH T ss_conf 999999999978--889999999999 No 131 >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix- turn-helix, repeat protein; 2.00A {Helicobacter pylori 26695} SCOP: a.118.18.1 Probab=98.10 E-value=9.9e-06 Score=47.54 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=79.7 Q ss_pred HHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987----0788899999998853166530233444556533----211110000111000000000011 Q T0595 5 LALEEKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKG 76 (123) Q Consensus 5 ~a~~~~~~g~~~~~----~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 76 (123) ...++..+|..+.. ......++.++..+.. +.++.+..++|.++.. .++++.|+..++++.+. .++.+ T Consensus 145 ~~~~~~~Lg~~y~~~~~~~~~~~~~~~~~~~aa~--~g~~~a~~~lg~~y~~g~~~~~d~~~A~~~y~~aa~~--g~~~A 220 (273) T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGG 220 (273) T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC--CCHHH T ss_conf 0579999829987589753249988668998750--5989999997142026874102688899999999987--99999 Q ss_pred HHHHHHHHHH----HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 3346899987----26888999999999974899688899999999 Q T0595 77 YTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 118 (123) Q Consensus 77 ~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 118 (123) .+++|.+|.. ..++++|...|++|.+.. +.++...+.++. T Consensus 221 ~~~LG~~y~~G~g~~~n~~~A~~~~~~Aa~~G--~~~A~~~L~~L~ 264 (273) T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQLK 264 (273) T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTCC T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH T ss_conf 99999999839997649999999999999888--999999999999 No 132 >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynthesis, protein binding; 2.50A {Pseudomonas fluorescens} Probab=98.06 E-value=4.4e-05 Score=44.17 Aligned_cols=105 Identities=19% Similarity=0.053 Sum_probs=80.7 Q ss_pred HHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999987----0788899999998853166530233444556533----211110000111000000000011 Q T0595 5 LALEEKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKG 76 (123) Q Consensus 5 ~a~~~~~~g~~~~~----~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 76 (123) .+.+...+|..++. ..++.+|+.+|+++...+ +.+.+++|.+|.. ..++++|+..++++.+. .++.+ T Consensus 282 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~~---~~a~~~Lg~~y~~G~~~~~d~~~A~~~~~~AA~~--g~~~A 356 (452) T 3e4b_A 282 QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGRE---VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA 356 (452) T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTC---HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC--CCHHH T ss_conf 999999999999849988878899999998762168---5999999999982999877999999999999978--88999 Q ss_pred HHHHHHHHHH----HCCHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 3346899987----268889999999999748996888999999 Q T0595 77 YTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQR 116 (123) Q Consensus 77 ~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~l~~ 116 (123) .+++|.+|.. ..++.+|...|+.+.... ++.+...+.. T Consensus 357 ~~~lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~l~~ 398 (452) T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQ 398 (452) T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH T ss_conf 99999999859998879999999999998689--9999999999 No 133 >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Probab=98.01 E-value=5e-05 Score=43.88 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=86.4 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999987078889999999885316653----------------------02334445565332111100001110 Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----------------------AKLYSNRAACYTKLLEFQLALKDCEE 65 (123) Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (123) .+...+......++..+|+..+.+|+.+.... ..++..++.+++..|++++|+..+++ T Consensus 117 ~~~~~~~~~~~~~~~~~a~~~l~~Al~LyrG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~l~~g~~~~a~~~~~~ 196 (388) T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 68888766540599799999999999984788667876227899999999999999999999999977999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHH Q ss_conf 00000000011334689998726888999999999974-------899688899999999 Q T0595 66 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL-------DSSCKEAADGYQRCM 118 (123) Q Consensus 66 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l-------~p~~~~a~~~l~~~~ 118 (123) ++..+|.+-.+|..+-.++...|+..+|+..|+++... +|. ++....+.+++ T Consensus 197 ~l~~dP~~E~~~~~Lm~al~~~G~~~eAl~~Y~~~r~~L~~ELG~eP~-~~l~~L~~~il 255 (388) T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL 255 (388) T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH T ss_conf 999685899999999999998599999999999999999997189978-99999999973 No 134 >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Probab=97.95 E-value=4.3e-05 Score=44.22 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=68.8 Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC Q ss_conf 870788899999998853166530233444556533----2111100001110000000000113346899987----26 Q T0595 17 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MK 88 (123) Q Consensus 17 ~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~ 88 (123) ...+++++|+..|+++.+. .++.+...+|.+|.. ..++++|+..++++.+. .++.+.+.+|.+|.. .. T Consensus 36 ~~~~~~~~a~~~~~~aa~~--g~~~a~~~lg~~y~~G~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~ 111 (138) T 1klx_A 36 NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK 111 (138) T ss_dssp CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCC T ss_conf 6676899999999999988--899999999999867886312699999999999883--882689999999981999774 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 888999999999974899688899999 Q T0595 89 DYTKAMDVYQKALDLDSSCKEAADGYQ 115 (123) Q Consensus 89 ~~~~A~~~~~~al~l~p~~~~a~~~l~ 115 (123) ++.+|++.|+++.+. .++.+...+. T Consensus 112 d~~~A~~~~~~Aa~~--G~~~A~~~Lg 136 (138) T 1klx_A 112 NEKQAVKTFEKACRL--GSEDACGILN 136 (138) T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHC- T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHH T ss_conf 899999999999987--8899999985 No 135 >3mek_A SET and MYND domain-containing protein 3; histone methyltransferase, zinc finger MYND domain-containing protein 1, histone H3, DI-methylation; HET: SAM; 2.10A {Homo sapiens} Probab=97.92 E-value=2.1e-05 Score=45.79 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=60.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112899999999998707888999999988531--------665302334445565332111100001110000000 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 71 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 71 (123) ++..+..+..+|..+...|+|++|+..+.+++.. +|.-...+..+|.++..+|++++|+..+++++.+-. T Consensus 325 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~i~~ 402 (429) T 3mek_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429) T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 233499999999999877899999999999999999874999899999999999999987899999999999999999 No 136 >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Probab=97.70 E-value=0.00021 Score=40.65 Aligned_cols=92 Identities=20% Similarity=0.081 Sum_probs=45.4 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999998707888999999988531665302334445565332111100001110000000000113346899987268 Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 89 (123) Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 89 (123) ..+|......++++.|...|+.++..-|........++.+....|+... ...|..+...+|....+.+.+|......|+ T Consensus 471 ~~~g~~~l~~~~~~~A~~~f~~vl~~~pge~ap~lAla~~~e~~g~~~~-~~~y~~v~~~d~~~~~aafglAr~~~~~g~ 549 (681) T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD 549 (681) T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 9999998864798999999999997358864669899999987478568-899999985080033441037999886378 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8899999999997 Q T0595 90 YTKAMDVYQKALD 102 (123) Q Consensus 90 ~~~A~~~~~~al~ 102 (123) ...|+..+.++.. T Consensus 550 ~~~Av~~l~~vp~ 562 (681) T 2pzi_A 550 RVGAVRTLDEVPP 562 (681) T ss_dssp HHHHHHHHHTSCT T ss_pred HHHHHHHHHHCCC T ss_conf 8789999850784 No 137 >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Probab=97.60 E-value=0.00039 Score=39.16 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=94.7 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998707888999999988531665302334445565332111100001110000000000113346899987 Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 86 (123) Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 86 (123) ......+...+..|++.+|...++.+....|.+..+...+|.+.+..++++.|...|..++..-|.......-++.+-.. T Consensus 434 e~~l~~~r~~l~~g~~~~A~~~l~~~~~~~~~~~r~~~~~g~~~l~~~~~~~A~~~f~~vl~~~pge~ap~lAla~~~e~ 513 (681) T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 88999999876267999999999999875573189999999998864798999999999997358864669899999987 Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 26888999999999974899688899999999754 Q T0595 87 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 121 (123) Q Consensus 87 ~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q 121 (123) .|+..+ ...|..+...+|....+...++++..+. T Consensus 514 ~g~~~~-~~~y~~v~~~d~~~~~aafglAr~~~~~ 547 (681) T 2pzi_A 514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE 547 (681) T ss_dssp HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 478568-8999999850800334410379998863 No 138 >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646} Probab=97.58 E-value=0.00091 Score=37.25 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=87.8 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH Q ss_conf 999999999987078889999999885316653------02334445565332111100001110000000-------00 Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEP-------TF 73 (123) Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~ 73 (123) ..+...+......+++.+++..+..++...... ...+...|.++...+.+..+...+.+++.... .. T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (293) T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293) T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 99999999988635799999999999998886302577778876667888988779999999999999998745307789 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHH Q ss_conf 0113346899987268889999999999748996------88899999999754 Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQ 121 (123) Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~q 121 (123) ...++++|.++...+++.+|+..+++++++-++. ......++.++..+ T Consensus 196 ~~~~~nl~~~~~~~~~~~~a~~~~~~ai~~~~~~~~~~~l~~~~~~~g~~~~~~ 249 (293) T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 989999988888877899999999999999998699999999999999999980 No 139 >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Probab=97.57 E-value=0.00033 Score=39.54 Aligned_cols=93 Identities=19% Similarity=0.116 Sum_probs=72.0 Q ss_pred HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHH Q ss_conf 07888999999988531665302334445565332111100001110000000000113346899987----26888999 Q T0595 19 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAM 94 (123) Q Consensus 19 ~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~ 94 (123) .+|+++|+.+|.++.+.. ++....+++. ....++++|+..++++.+. .++.+.+.+|.+|.. ..++.+|+ T Consensus 8 ~kD~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~lg~~y~~G~~~~~d~~~A~ 81 (138) T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138) T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHH--CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 718999999999999888--8999999984--6676899999999999988--899999999999867886312699999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 9999999748996888999999997 Q T0595 95 DVYQKALDLDSSCKEAADGYQRCMM 119 (123) Q Consensus 95 ~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123) +.|+++.+. .++.+...++.++. T Consensus 82 ~~~~~aa~~--g~~~a~~~Lg~~y~ 104 (138) T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQY 104 (138) T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHH T ss_pred HHHHHHHHC--CCHHHHHHHHHHHH T ss_conf 999999883--88268999999998 No 140 >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Probab=96.80 E-value=0.0074 Score=32.49 Aligned_cols=98 Identities=6% Similarity=-0.039 Sum_probs=73.0 Q ss_pred HCCHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 07888999999988531665---------3023344455653321111000011100000--000001133468999872 Q T0595 19 KGDYPQAMKHYTEAIKRNPK---------DAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAAALEAM 87 (123) Q Consensus 19 ~~~~~~Ai~~~~~ai~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 87 (123) .+.++.....|++++...++ ...+|...+... ..+..++|...|..++.. .+..+..|...|..+... T Consensus 50 ~~~~~~l~~llER~l~~~~~~~~yk~d~rylklW~~Y~~~~-~~~~~~~a~~v~~~~~~~~i~~~~a~~~~~yA~~~e~~ 128 (202) T 3esl_A 50 ESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENA 128 (202) T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC T ss_conf 00599999999999984354777720489999999999998-51254779999999998378985199999999999984 Q ss_pred CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHH Q ss_conf 68889999999999748996-8889999999 Q T0595 88 KDYTKAMDVYQKALDLDSSC-KEAADGYQRC 117 (123) Q Consensus 88 ~~~~~A~~~~~~al~l~p~~-~~a~~~l~~~ 117 (123) |++++|...|++++...+.- ..++..+... T Consensus 129 g~~~~Ar~Iy~~gl~~~a~P~~~L~~~y~~f 159 (202) T 3esl_A 129 QFFLEAKVLLELGAENNCRPYNRLLRSLSNY 159 (202) T ss_dssp TCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 9999999999999875699899999999999 No 141 >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Probab=96.74 E-value=0.0028 Score=34.69 Aligned_cols=77 Identities=9% Similarity=-0.105 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 4556533211110000111000000----------------------000011334689998726888999999999974 Q T0595 46 RAACYTKLLEFQLALKDCEECIQLE----------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 46 ~a~~~~~~~~~~~A~~~~~~al~~~----------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) .+......++.+.|+..+.+++.+- .....++..++..+...|++.+|+..+++++.. T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~LyrG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~l~~g~~~~a~~~~~~~l~~ 200 (388) T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 87665405997999999999999847886678762278999999999999999999999999779999999999999996 Q ss_pred CCCCHHHHHHHHHHHHHHC Q ss_conf 8996888999999997542 Q T0595 104 DSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 104 ~p~~~~a~~~l~~~~~~q~ 122 (123) +|-+..++..+.+++.... T Consensus 201 dP~~E~~~~~Lm~al~~~G 219 (388) T 2ff4_A 201 HPYREPLWTQLITAYYLSD 219 (388) T ss_dssp STTCHHHHHHHHHHHHTTT T ss_pred CCCCHHHHHHHHHHHHHCC T ss_conf 8589999999999999859 No 142 >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Probab=96.40 E-value=0.028 Score=29.49 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=69.7 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------- Q ss_conf 999999987078889999999885316653023344455653321111000011100000000----------------- Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----------------- 72 (123) Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------- 72 (123) ...|..++-.|.|..|+-.+. .-+-+...+..+.|+..+++|..|+.+++..++.+-. T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~dve~d~~~d~~~~~~fv~~~ 111 (242) T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242) T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT T ss_pred HHHHHHHHHCCHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC T ss_conf 556656532233768999998-----245089999999999999999999999999970533248665720999970723 Q ss_pred H-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 0-01133468999872688899999999997489968889 Q T0595 73 F-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123) Q Consensus 73 ~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123) + ...+..+|.++.+.|+.++|+..|......+|-.+.+- T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242) T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242) T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHH T ss_conf 0999999999999980678877678555338762444599 No 143 >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} Probab=96.19 E-value=0.029 Score=29.34 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=71.6 Q ss_pred HCCHHHHHHHHHHHHHCCCCCHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 078889999999885316653023--3444556-53321111000011100000--000001133468999872688899 Q T0595 19 KGDYPQAMKHYTEAIKRNPKDAKL--YSNRAAC-YTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAAALEAMKDYTKA 93 (123) Q Consensus 19 ~~~~~~Ai~~~~~ai~~~p~~~~~--~~~~a~~-~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A 93 (123) .|+.......|++++...|..... |...... ....+..+.|.+.|+.++.. .+..+..|...|..+...|++..| T Consensus 36 ~~~~~~l~~l~eR~~~~~~~~~~~~~d~ryi~~wi~~~~~~~~ar~ife~~~~~~i~~~~a~lw~~yA~~ee~~g~~~~A 115 (164) T 2wvi_A 36 GGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKA 115 (164) T ss_dssp ----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH T ss_conf 89799999999999998557587856899999999881310349999999987388866399999999999984899999 Q ss_pred HHHHHHHHHHCCCC-HHHHHHHHHH Q ss_conf 99999999748996-8889999999 Q T0595 94 MDVYQKALDLDSSC-KEAADGYQRC 117 (123) Q Consensus 94 ~~~~~~al~l~p~~-~~a~~~l~~~ 117 (123) ...|++++.....- ...+..+... T Consensus 116 r~Iy~~gl~~~A~P~~~L~~~y~~F 140 (164) T 2wvi_A 116 DAIFQEGIQQKAEPLERLQSQHRQF 140 (164) T ss_dssp HHHHHHHHHTTCBSHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 9999999876799999999999999 No 144 >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A Probab=95.83 E-value=0.06 Score=27.71 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=55.8 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------ Q ss_conf 99999998707888999999988531665302334445565332111100001110000000------------------ Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP------------------ 71 (123) Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------------ 71 (123) ...|..+|..|.|+.|.-.|+. ..-|..++.|+.++|+|..|++..++|-+..- T Consensus 1199 ~~vGDrc~~e~~Y~aAkilyt~--------isN~akLA~tlV~L~~yq~AVdaArKAns~ktWKeV~~aCvd~~EfrLAq 1270 (1630) T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630) T ss_pred HHHHHHHHHCCCHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 8888998761368999999996--------76389899999989878999999986389027999999982732888999 Q ss_pred -------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf -------0001133468999872688899999999997489968889999999 Q T0595 72 -------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123) Q Consensus 72 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123) -+++-+-.+-.-|...|.+++=+..++.++.++.-+......++-+ T Consensus 1271 icGLnlIv~adeL~~lv~~YE~~G~f~ELisLlE~glglerAHmgmFTELaIl 1323 (1630) T 1xi4_A 1271 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630) T ss_pred HHCCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 82741241488889999999967979999999997758873045789999999 No 145 >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Probab=95.43 E-value=0.087 Score=26.88 Aligned_cols=50 Identities=4% Similarity=0.145 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHC Q ss_conf 00011334689998726888999999999974--8996888999999997542 Q T0595 72 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 122 (123) Q Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~q~ 122 (123) .....|...+... ..+..++|...|+.++.. .+..+..+..++..+..++ T Consensus 78 rylklW~~Y~~~~-~~~~~~~a~~v~~~~~~~~i~~~~a~~~~~yA~~~e~~g 129 (202) T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ 129 (202) T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC T ss_conf 9999999999998-512547799999999983789851999999999999849 No 146 >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Probab=94.92 E-value=0.13 Score=26.04 Aligned_cols=106 Identities=11% Similarity=-0.008 Sum_probs=75.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----------------CHH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7112899999999998707888999999988531665-----------------302-3344455653321111000011 Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------------DAK-LYSNRAACYTKLLEFQLALKDC 63 (123) Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~-----------------~~~-~~~~~a~~~~~~~~~~~A~~~~ 63 (123) +-+.+.+.+-...++.+.+||..|+.+++..|..+.+ +.+ ++..+|.++.+.|+-++||.++ T Consensus 58 ~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~dve~d~~~d~~~~~~fv~~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242) T 3kae_A 58 KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242) T ss_dssp TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 24508999999999999999999999999997053324866572099997072309999999999999806788776785 Q ss_pred HHHHHHHHHHHH------------------------------------------------------------HHHHHHHH Q ss_conf 100000000001------------------------------------------------------------13346899 Q T0595 64 EECIQLEPTFIK------------------------------------------------------------GYTRKAAA 83 (123) Q Consensus 64 ~~al~~~p~~~~------------------------------------------------------------~~~~lg~~ 83 (123) ...-..+|-.+. .--.-+.. T Consensus 138 ~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~e~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~ 217 (242) T 3kae_A 138 VRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARR 217 (242) T ss_dssp HHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHH T ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 55338762444599888626787413368887604246277765648999874057789999974888307899999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCC Q ss_conf 987268889999999999748996 Q T0595 84 LEAMKDYTKAMDVYQKALDLDSSC 107 (123) Q Consensus 84 ~~~~~~~~~A~~~~~~al~l~p~~ 107 (123) +..+|..+++..+|.-+-..||.+ T Consensus 218 yf~lg~~d~sr~~F~llR~kDP~F 241 (242) T 3kae_A 218 YFNLGMNDKSKACFELVRRKDPMF 241 (242) T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTT T ss_pred HHHCCCCHHHHHHHHHHHHCCCCC T ss_conf 976042156789999998118776 No 147 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Probab=91.42 E-value=0.38 Score=23.52 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 33468999872688899999999997489968889999999975 Q T0595 77 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123) Q Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123) ...++......|+|..|.+....++..+|++.++...++.++.. T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~v~~~p~~~~ar~l~a~a~~~ 495 (658) T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQ 495 (658) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999999865635799999999997098617899999999999 No 148 >2v1t_A Mitochondrial import receptor subunit TOM20 homolog; outer membrane, transit peptide, phosphorylation, mitochondrion, transmembrane, oxidoreductase, protein transport, NAD; 1.92A {Rattus norvegicus} PDB: 2v1s_A Probab=88.65 E-value=0.45 Score=23.13 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 99999999870788899999998853166530233 Q T0595 9 EKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY 43 (123) Q Consensus 9 ~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~ 43 (123) -+.+|..+..+|++++|+.+|..||.++|.-.+.+ T Consensus 20 eV~lGE~L~~~g~~~~g~~hf~nAl~Vc~qP~~LL 54 (73) T 2v1t_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSCHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH T ss_conf 99999999878988899999999998768899999 No 149 >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 Probab=87.80 E-value=0.57 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 999999999870788899999998853 Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIK 34 (123) Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~ 34 (123) -+-.++..+...|.|+|||+|..++.. T Consensus 17 ~~~RrAEr~l~~grfdEAIecH~kAa~ 43 (97) T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999889999986878999999999999 No 150 >1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 Probab=87.40 E-value=0.62 Score=22.40 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 2899999999998707888999999988531 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123) .|..+..++..+-..|+|++|+.+|.++|++ T Consensus 14 ~A~~l~~~Av~~D~~g~y~~A~~~Y~~ai~~ 44 (93) T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999999999809999999999999999 No 151 >1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1 Probab=85.64 E-value=0.6 Score=22.48 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 99999999870788899999998853166530233 Q T0595 9 EKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY 43 (123) Q Consensus 9 ~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~ 43 (123) -+.+|..+...|++++|..+|..||.++|.-...+ T Consensus 23 eV~lGE~L~~~G~~~~g~~h~~nAi~Vc~qP~~LL 57 (95) T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH T ss_conf 99999999867988899999999998767899999 No 152 >2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule interacting and trafficking domain; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* Probab=85.63 E-value=0.88 Score=21.62 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 2899999999998707888999999988531 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123) .|..+...+..+=..|+|.+|+.+|.++|.. T Consensus 10 ~A~~~a~~Av~~D~~g~y~eA~~~Y~~ai~~ 40 (83) T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999999988819999999999999999 No 153 >2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 Probab=85.39 E-value=0.9 Score=21.57 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 2899999999998707888999999988531 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123) .|..+..+|..+=..|+|++|+.+|.++|.+ T Consensus 17 kA~~l~~~Av~~D~~g~y~eA~~~Y~~ale~ 47 (117) T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117) T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999999999828999999999999999 No 154 >2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, cytoplasm, transport, ESCRT-III, MVB, VPS2, VPS4, SKD1; 1.98A {Saccharomyces cerevisiae} Probab=84.60 E-value=1 Score=21.22 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 2899999999998707888999999988531 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123) .+..+...|..+-..|+|++|+.+|.++|+. T Consensus 12 ~A~~~~~~Av~~D~~~~y~~A~~~Y~~ai~~ 42 (85) T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999999998849999999999999999 No 155 >2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} Probab=84.27 E-value=1.5 Score=20.34 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 289999999999870788899999998853 Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIK 34 (123) Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~ 34 (123) .|..+...|..+=..|+|.+|+.+|.+||+ T Consensus 18 ~A~~~a~~Av~~D~~g~y~eA~~~Y~~Aie 47 (83) T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999998883999999999999999 No 156 >2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=75.70 E-value=2.8 Score=19.02 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=24.6 Q ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7078889999999885316653023344455653321111000011100000 Q T0595 18 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 69 (123) Q Consensus 18 ~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 69 (123) -++.|++|..+.++||..+. .|.-..-+..|..++..+.+++.+ T Consensus 15 ik~~~~~Af~~I~kAL~~DE--------~g~k~~Al~~Y~~gi~~Le~g~ai 58 (116) T 2dl1_A 15 IREAYKKAFLFVNKGLNTDE--------LGQKEEAKNYYKQGIGHLLRGISI 58 (116) T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHHHSS T ss_pred HHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999851533--------489999999999999999988456 No 157 >3kez_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482} Probab=71.40 E-value=3.3 Score=18.59 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 011334689998726888999999999974 Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) ++.++.+|.++.++|+..+|+..++++... T Consensus 338 aEv~L~~AEA~~~~g~~~~A~~~iN~vR~R 367 (461) T 3kez_A 338 SEAYLNAAEAAVQTGDNAKAVKYLNSIVQR 367 (461) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 999999999998758807899998899984 No 158 >2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplasm, hydrolase, microtubule; NMR {Mus musculus} Probab=66.08 E-value=5.2 Score=17.57 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=20.2 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 9999999998707888999999988531 Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123) Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123) ....+|..+...|+|+.|+.+|+-+++. T Consensus 14 e~vklARe~Al~GnYDsa~vyY~g~~~q 41 (78) T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999999999965837999999999999 No 159 >3lew_A SUSD-like carbohydrate binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus} Probab=62.29 E-value=6.2 Score=17.18 Aligned_cols=29 Identities=21% Similarity=0.058 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHC Q ss_conf 13346899987268889999999999748 Q T0595 76 GYTRKAAALEAMKDYTKAMDVYQKALDLD 104 (123) Q Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123) ++..++.++...++|.+|....++++... T Consensus 205 A~al~ar~~L~~~~~~~a~~~a~~vi~~~ 233 (495) T 3lew_A 205 VLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999986300999999999998658 No 160 >3jq1_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482} Probab=52.87 E-value=9.1 Score=16.30 Aligned_cols=30 Identities=7% Similarity=-0.112 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 011334689998726888999999999974 Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) ++.++.++.++..+|+..+|++.++++.+- T Consensus 361 aE~~L~~AEA~~~~g~~~~A~~~lN~vR~R 390 (481) T 3jq1_A 361 ADVLLMLAEAYMNKGALDTSIGYINQIRRR 390 (481) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 889999999998539958899999999974 No 161 >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET pathway, GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Probab=48.70 E-value=11 Score=15.93 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 999999998707888999999988 Q T0595 9 EKNKGNECFQKGDYPQAMKHYTEA 32 (123) Q Consensus 9 ~~~~g~~~~~~~~~~~Ai~~~~~a 32 (123) ++-+...+.++++|++|++.+..+ T Consensus 38 ~RTi~~Ryv~~kky~eAidlL~~g 61 (336) T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV 61 (336) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHH T ss_conf 999999998630799999999999 No 162 >2vkj_A TM1634; membrane protein, X-RAY, TPR motif, SAD, joint center for structural genomics, JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A* Probab=46.25 E-value=12 Score=15.72 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 0000113346899987268889999999999748996888 Q T0595 71 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 110 (123) Q Consensus 71 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a 110 (123) ...+..++--|.-++.+.+|.+|+-.|++++.+..+ .++ T Consensus 50 ekkarsl~ae~kdl~~~anygealv~fek~~nls~n-eei 88 (106) T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLSDN-EEI 88 (106) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH-HHH T ss_conf 888999999888899871411689999998046527-999 No 163 >2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1 Probab=45.98 E-value=12 Score=15.70 Aligned_cols=71 Identities=8% Similarity=0.074 Sum_probs=51.9 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-HH--HH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999987078889999999885316653-02--33---444556---53321111000011100000000001133 Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AK--LY---SNRAAC---YTKLLEFQLALKDCEECIQLEPTFIKGYT 78 (123) Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-~~--~~---~~~a~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 78 (123) .-+..|..+|..|+|=+|-+.++..-...+.. ++ ++ ..++.. +.+.|+...|...+.+++..-...+..+. T Consensus 34 ~a~~~Gi~lfN~g~y~eaHEvlE~lW~~~~~~~~er~~lQGLIQlAaa~~~H~~~gN~~GA~~l~~kA~~~L~~~~~~~~ 113 (161) T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYY 113 (161) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGG T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999996899899699999999857899747899999999999999999827889999999999999972897347 No 164 >3l22_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.05A {Bacteroides fragilis} Probab=45.73 E-value=5.8 Score=17.32 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 1289999999999870788899999998853 Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIK 34 (123) Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~ 34 (123) +...++-.++.+++..++|++|+...+.++. T Consensus 199 ~k~aa~al~Arv~L~~~~~~~A~~~a~~v~~ 229 (441) T 3l22_A 199 TQAAANMLKMRVYMAMNEWDKAITAGELVTG 229 (441) T ss_dssp BHHHHHHHHHHHHHHTTCHHHHHHHHHTCCS T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 6999999999998531016999999999871 No 165 >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Probab=44.39 E-value=13 Score=15.56 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=10.6 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 34689998726888999999999 Q T0595 78 TRKAAALEAMKDYTKAMDVYQKA 100 (123) Q Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a 100 (123) +=+|.++..+|+.++|...|+++ T Consensus 323 YW~aRa~e~~G~~~~A~~~~~~a 345 (618) T 1qsa_A 323 YWQADLLLERGREAEAKEILHQL 345 (618) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999998768847899999988 No 166 >3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Probab=42.01 E-value=14 Score=15.36 Aligned_cols=29 Identities=21% Similarity=0.044 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 01133468999872688899999999997 Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALD 102 (123) Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 102 (123) ++.++.+|.++.++|+..+|+..+.++-. T Consensus 364 aEv~L~~AEA~~~~g~~~~A~~~lN~vR~ 392 (478) T 3hdx_A 364 EDITLLRAEALCALNRSTEAVSYLNMIRT 392 (478) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 88999999999985881899999999999 No 167 >1rw6_A Amyloid beta A4 protein; coiled-coil, dimer, cell adhesion; 2.80A {Homo sapiens} SCOP: a.47.4.1 PDB: 1tkn_A Probab=38.57 E-value=16 Score=15.06 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 89999999885316653 Q T0595 23 PQAMKHYTEAIKRNPKD 39 (123) Q Consensus 23 ~~Ai~~~~~ai~~~p~~ 39 (123) ..|+.+|..+|...|-+ T Consensus 110 r~a~~~y~~AL~~~ppn 126 (210) T 1rw6_A 110 RLALENYITALQAVPPR 126 (210) T ss_dssp HHHHHHHHHHHTCSSCC T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 89999999998458998 No 168 >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Probab=32.69 E-value=20 Score=14.53 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=54.3 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCHHH------------------------------------------------- Q ss_conf 9999987078889999999885316653023------------------------------------------------- Q T0595 12 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKL------------------------------------------------- 42 (123) Q Consensus 12 ~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~------------------------------------------------- 42 (123) -+.-+...|..++.++-..+.+...|....- T Consensus 13 dAKk~i~dG~ie~Gv~ii~~~~~Ss~~~E~NW~ICNvidt~dC~~~~~~Ld~IG~~FDls~C~Nlk~ii~C~~~~n~~se 92 (172) T 1wy6_A 13 DAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNE 92 (172) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHCCHHH T ss_conf 99998874028766999999951587440244444242112178999999998634184554267888988887073089 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC Q ss_conf 3444556533211110000111-0000000000113346899987268889999999999748 Q T0595 43 YSNRAACYTKLLEFQLALKDCE-ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 104 (123) Q Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123) |..+|.-++-...-.++++... ..++-..-.+.....+|.+|.+.|...+|-+.+.+|-+-. T Consensus 93 ~vd~ALd~lv~q~kkdqLe~i~~~l~kn~ei~~~illkia~A~~kiG~~rea~~ll~eAC~kG 155 (172) T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 999999999982608899999999876489986999999999988523333899999999975 No 169 >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding, GET5, GET4; 1.99A {Saccharomyces cerevisiae} Probab=28.96 E-value=23 Score=14.18 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9999999998707888999999988 Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEA 32 (123) Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~a 32 (123) -++-+...+.++++|++|++.+..+ T Consensus 35 ~~RTi~~Ry~~~k~y~eAidlL~~g 59 (312) T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG 59 (312) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 9999999987110699999999999 No 170 >2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1 Probab=27.81 E-value=24 Score=14.07 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 0011334689998726888999999999 Q T0595 73 FIKGYTRKAAALEAMKDYTKAMDVYQKA 100 (123) Q Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (123) .+..|+.-|.-|...|++..|+.++.=+ T Consensus 34 ma~~Y~~Da~~fl~~gD~v~A~~~i~Ya 61 (86) T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999999998879868999999999 No 171 >2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus HB8} SCOP: a.246.2.1 PDB: 2cxd_A Probab=27.69 E-value=24 Score=14.06 Aligned_cols=62 Identities=10% Similarity=-0.015 Sum_probs=37.7 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999987078889999999885316653-0233---4445565332111100001110000000 Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLY---SNRAACYTKLLEFQLALKDCEECIQLEP 71 (123) Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p 71 (123) ...|..+|..|+|=+|-+.++..-...+.. ..++ ...+..+.+..+-..|...+.+++..=. T Consensus 5 ~~~gi~lfn~g~y~eaHE~lE~~W~~~~~~er~~~qGlIq~A~a~~h~~~~~ga~~ll~~a~~~L~ 70 (94) T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRPGLRNLRKAEARLE 70 (94) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 999999984898798699999998208970589999999999999999828099999999999985 No 172 >3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} Probab=26.00 E-value=26 Score=13.89 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=22.6 Q ss_pred HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 078889999999885316653023344455653321111000011100000 Q T0595 19 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 69 (123) Q Consensus 19 ~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 69 (123) +..|++|..+.++||..|.+.-. |.-..-+.-|.+++..+.+++.+ T Consensus 10 k~~h~~Af~~I~~AL~~DE~e~~-----g~k~~A~~~Y~~Gi~~Le~gi~I 55 (89) T 3eab_A 10 RVFHKQAFEYISIALRIDEDEKA-----GQKEQAVEWYKKGIEELEKGIAV 55 (89) T ss_dssp HHHHHHHHHHHHHHHHHHHHSCS-----SSGGGSHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999624322265-----71999999999999999975367 No 173 >2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.32A {Methanothermobacterthermautotrophicus str} SCOP: a.8.11.1 Probab=23.88 E-value=29 Score=13.67 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 0113346899987268889999999999 Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKAL 101 (123) Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al 101 (123) +..|+.-|.-|...|++..|..++.=+- T Consensus 39 A~~Y~~Da~~Fl~kGD~v~Afa~i~Ya~ 66 (87) T 2pmr_A 39 ALNYRDDSVYYLEKGDHITSFGCITYAH 66 (87) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999999998787789999999999 No 174 >3i4g_A SUSD-like carbohydrate binding protein BF1063; YP_210668.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343} Probab=22.30 E-value=31 Score=13.49 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 1334689998726888999999999974 Q T0595 76 GYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123) Q Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123) ++..++.++.-.+++..|...+++++.. T Consensus 200 a~allar~~l~~~~~~~a~~~~~~~i~~ 227 (528) T 3i4g_A 200 ALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528) T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9999999985012299999999998874 Done!