Query T0595 HR4403E, , 123 residues
Match_columns 123
No_of_seqs 138 out of 17387
Neff 9.3
Searched_HMMs 11830
Date Mon Jul 5 09:09:12 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0595.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0595.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09295 ChAPs: ChAPs (Chs5p-A 99.4 1E-13 8.8E-18 87.9 8.2 105 7-111 201-305 (395)
2 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 3.2E-11 2.7E-15 74.8 10.2 105 15-122 178-282 (395)
3 PF04733 Coatomer_E: Coatomer 99.2 2E-10 1.7E-14 70.7 11.3 111 2-112 161-274 (290)
4 PF04733 Coatomer_E: Coatomer 99.0 5.2E-09 4.4E-13 63.3 11.7 107 14-120 139-247 (290)
5 PF06552 TOM20_plant: Plant sp 98.9 1.9E-09 1.6E-13 65.6 7.8 99 22-120 7-126 (186)
6 PF10300 IML2: Putative mitoch 98.4 3.6E-07 3E-11 53.6 8.2 103 3-106 259-375 (466)
7 PF03704 BTAD: Bacterial trans 98.3 2.1E-06 1.7E-10 49.7 8.4 97 7-103 7-125 (146)
8 PF10300 IML2: Putative mitoch 98.1 8.1E-06 6.8E-10 46.6 9.6 99 18-116 240-343 (466)
9 PF06552 TOM20_plant: Plant sp 98.1 8.8E-07 7.5E-11 51.6 4.5 83 1-83 20-123 (186)
10 PF05843 Suf: Suppressor of fo 98.1 1.7E-05 1.4E-09 44.9 10.1 102 7-108 2-104 (284)
11 PF00515 TPR_1: Tetratricopept 97.8 5.2E-06 4.4E-10 47.5 3.8 32 75-106 2-33 (34)
12 PF07719 TPR_2: Tetratricopept 97.8 7.2E-06 6.1E-10 46.8 4.3 32 7-38 2-33 (34)
13 PF00515 TPR_1: Tetratricopept 97.8 6.8E-06 5.8E-10 46.9 4.1 34 6-39 1-34 (34)
14 PF07719 TPR_2: Tetratricopept 97.8 6.1E-06 5.2E-10 47.2 3.4 34 74-107 1-34 (34)
15 PF02259 FAT: FAT domain; Int 97.7 0.00027 2.3E-08 38.5 11.2 119 2-120 142-304 (351)
16 PF05843 Suf: Suppressor of fo 97.6 0.00041 3.5E-08 37.6 10.4 106 6-111 35-144 (284)
17 PF03704 BTAD: Bacterial trans 97.5 4.1E-05 3.5E-09 42.8 4.8 66 4-69 60-125 (146)
18 PF10579 Rapsyn_N: Rapsyn N-te 97.5 8.3E-05 7E-09 41.3 6.2 68 3-70 3-73 (80)
19 PF09986 DUF2225: Uncharacteri 97.4 0.00027 2.2E-08 38.6 7.9 95 14-108 85-199 (214)
20 PF04184 ST7: ST7 protein; In 97.4 0.00053 4.5E-08 37.0 8.9 104 14-119 176-306 (539)
21 PF10602 RPN7: 26S proteasome 97.3 0.00066 5.5E-08 36.5 8.7 100 6-105 36-144 (177)
22 PF04184 ST7: ST7 protein; In 97.3 0.00082 6.9E-08 36.0 8.9 100 1-102 197-323 (539)
23 PF02259 FAT: FAT domain; Int 97.1 0.00088 7.4E-08 35.9 7.5 102 5-106 183-340 (351)
24 PF09613 HrpB1_HrpK: Bacterial 97.1 0.005 4.2E-07 31.9 11.4 107 3-111 7-113 (160)
25 PF04781 DUF627: Protein of un 96.7 0.0019 1.6E-07 34.2 6.6 93 12-104 2-108 (111)
26 PF08424 DUF1740: Protein of u 96.2 0.018 1.5E-06 29.1 9.0 102 3-104 69-191 (236)
27 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.0052 4.4E-07 31.8 4.7 64 40-103 6-72 (80)
28 PF09613 HrpB1_HrpK: Bacterial 95.8 0.011 9.3E-07 30.1 6.4 79 42-120 12-90 (160)
29 PF07720 TPR_3: Tetratricopept 95.4 0.0062 5.2E-07 31.4 4.0 31 76-106 3-35 (36)
30 PF07720 TPR_3: Tetratricopept 95.3 0.008 6.7E-07 30.9 4.3 33 7-39 2-36 (36)
31 PF08631 SPO22: Meiosis protei 95.3 0.05 4.2E-06 26.7 10.8 99 6-105 35-153 (280)
32 PF09986 DUF2225: Uncharacteri 95.3 0.0092 7.8E-07 30.5 4.6 67 6-72 118-197 (214)
33 PF10602 RPN7: 26S proteasome 95.0 0.052 4.4E-06 26.6 7.7 86 21-106 11-105 (177)
34 PF04910 DUF654: Protein of un 94.1 0.098 8.3E-06 25.1 7.3 97 2-98 36-163 (358)
35 PF10345 Cohesin_load: Cohesin 93.8 0.12 1E-05 24.7 9.4 98 6-104 59-169 (608)
36 PF10858 DUF2659: Protein of u 93.8 0.12 1E-05 24.7 9.5 111 8-119 95-215 (220)
37 PF10255 Paf67: RNA polymerase 93.6 0.026 2.2E-06 28.2 3.6 59 44-103 126-193 (404)
38 PF04781 DUF627: Protein of un 91.6 0.096 8.1E-06 25.2 4.3 69 46-114 2-84 (111)
39 PF04053 Coatomer_WDAD: Coatom 91.4 0.23 1.9E-05 23.2 6.2 30 74-103 348-377 (444)
40 PF10516 SHNi-TPR: SHNi-TPR 90.9 0.09 7.6E-06 25.3 3.7 26 77-102 4-29 (38)
41 PF10516 SHNi-TPR: SHNi-TPR 90.5 0.093 7.9E-06 25.3 3.4 28 8-35 3-30 (38)
42 PF07079 DUF1347: Protein of u 89.5 0.18 1.5E-05 23.8 4.2 54 46-100 468-521 (549)
43 PF11817 Foie-gras_1: Foie gra 89.5 0.2 1.7E-05 23.6 4.4 47 58-104 169-221 (260)
44 PF06957 COPI_C: Coatomer (COP 89.0 0.43 3.7E-05 21.8 11.5 105 7-111 205-337 (422)
45 PF10952 DUF2753: Protein of u 87.0 0.29 2.5E-05 22.7 4.0 88 8-97 3-109 (140)
46 PF04212 MIT: MIT (microtubule 86.8 0.36 3E-05 22.2 4.3 31 5-35 4-34 (69)
47 PF09670 Cas_Cas02710: CRISPR- 85.9 0.67 5.7E-05 20.8 9.5 102 2-103 125-270 (379)
48 PF11207 DUF2989: Protein of u 83.6 0.56 4.7E-05 21.2 4.1 50 73-123 140-193 (203)
49 PF07721 TPR_4: Tetratricopept 82.2 0.33 2.8E-05 22.4 2.5 22 76-97 3-24 (26)
50 PF07219 HemY_N: HemY protein 67.0 2.6 0.00022 17.7 5.5 30 74-103 85-114 (134)
51 PF09797 NatB_MDM20: N-acetylt 62.8 3.2 0.00027 17.2 6.2 45 54-98 197-241 (365)
52 PF00637 Clathrin: Region in C 59.1 3.7 0.00032 16.9 6.3 105 14-119 15-137 (144)
53 PF04348 LppC: LppC putative l 56.1 0.96 8.1E-05 20.0 0.0 95 10-105 28-129 (536)
54 PF11846 DUF3366: Domain of un 50.4 5.3 0.00045 16.1 4.4 50 57-107 128-177 (192)
55 PF01239 PPTA: Protein prenylt 40.9 7.6 0.00064 15.3 2.9 26 26-51 3-28 (31)
56 PF04190 DUF410: Protein of un 37.6 8.6 0.00073 15.0 9.2 114 6-119 90-239 (260)
57 PF04010 DUF357: Protein of un 36.0 9.1 0.00077 14.8 3.8 26 74-99 35-60 (75)
58 PF09205 DUF1955: Domain of un 30.5 11 0.00096 14.3 4.5 61 43-103 88-149 (161)
59 PF08311 Mad3_BUB1_I: Mad3/BUB 26.9 13 0.0011 14.0 4.7 59 37-101 66-126 (126)
60 PF05131 Pep3_Vps18: Pep3/Vps1 26.3 7.9 0.00067 15.2 0.8 18 82-99 111-128 (147)
61 PF05053 Menin: Menin; InterP 23.4 16 0.0013 13.6 2.9 65 39-103 276-347 (618)
62 PF02064 MAS20: MAS20 protein 21.2 8.1 0.00069 15.1 0.0 40 78-117 97-137 (183)
No 1
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other .
Probab=99.45 E-value=1e-13 Score=87.87 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998707888999999988531665302334445565332111100001110000000000113346899987
Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 86 (123)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 86 (123)
.....++..++.+++..+|+..++++|+.+|++.+++...|.+++..|++++|+..+++++.+.|.+..+|+.+|.+|..
T Consensus 201 ev~~lLArvyl~~~~e~kAi~~l~kaL~~~p~d~~LL~lqA~~Ll~k~~~~~Al~~ak~Av~l~P~~f~~W~~LA~~Yi~ 280 (395)
T PF09295_consen 201 EVSSLLARVYLLMNQEQKAIELLNKALKENPNDADLLNLQAEFLLSKGKYDEALEIAKRAVELAPSDFEAWYLLAKCYIQ 280 (395)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 19999999999679999999999999984898899999999999967998999999999998298278999999999998
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 2688899999999997489968889
Q T0595 87 MKDYTKAMDVYQKALDLDSSCKEAA 111 (123)
Q Consensus 87 ~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123)
+|++++|+..++.+--..++...+.
T Consensus 281 l~d~e~AL~aLNs~P~~~~~~~~~~ 305 (395)
T PF09295_consen 281 LGDFEEALLALNSCPMNTPNDKYAL 305 (395)
T ss_pred CCCHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 6799999999984738887601376
No 2
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other .
Probab=99.23 E-value=3.2e-11 Score=74.82 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=95.8
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99870788899999998853166530233444556533211110000111000000000011334689998726888999
Q T0595 15 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM 94 (123)
Q Consensus 15 ~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 94 (123)
.....+++++|+..+++....+|+ +...++.+|+.+++..+|+..+.++++.+|.+...+...|..+...|++++|+
T Consensus 178 ~l~~t~~~~~A~~llekL~~~~Pe---v~~lLArvyl~~~~e~kAi~~l~kaL~~~p~d~~LL~lqA~~Ll~k~~~~~Al 254 (395)
T PF09295_consen 178 LLQLTKRLDEAIELLEKLMEQDPE---VSSLLARVYLLMNQEQKAIELLNKALKENPNDADLLNLQAEFLLSKGKYDEAL 254 (395)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 998635499999999998725971---99999999996799999999999999848988999999999999679989999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999748996888999999997542
Q T0595 95 DVYQKALDLDSSCKEAADGYQRCMMAQY 122 (123)
Q Consensus 95 ~~~~~al~l~p~~~~a~~~l~~~~~~q~ 122 (123)
+.+++++++.|++.+.|..+++++..+.
T Consensus 255 ~~ak~Av~l~P~~f~~W~~LA~~Yi~l~ 282 (395)
T PF09295_consen 255 EIAKRAVELAPSDFEAWYLLAKCYIQLG 282 (395)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999829827899999999999867
No 3
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer . While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins . For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi . Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes . Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerize, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex . More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005198 structural molecule activity, 0005515 protein binding, 0008565 protein transporter activity, 0006461 protein complex assembly, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat
Probab=99.16 E-value=2e-10 Score=70.70 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7112899999999998707--88899999998853166530233444556533211110000111000000000011334
Q T0595 2 NPDLALEEKNKGNECFQKG--DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 79 (123)
Q Consensus 2 nP~~a~~~~~~g~~~~~~~--~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 79 (123)
+++........+.+.+..| ++++|...|+...+..|.++.++.++|.|++.+|++++|+..++++++.+|++++++.+
T Consensus 161 ~~D~~l~qla~a~v~l~~g~~~~~~A~~if~el~~~~~~~~~~l~g~A~~~l~~~~~~eAe~~L~eaL~~d~~~~~~l~N 240 (290)
T PF04733_consen 161 DEDSTLTQLAEAWVNLAVGGEKYQEAFYIFEELSQKFPSTPLLLNGLAVCHLQLGRYEEAEELLEEALDKDPNDPDTLAN 240 (290)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 97459999999999998651229999999999987578978999999999988189999999999998649999899999
Q ss_pred HHHHHHHHCCHHHH-HHHHHHHHHHCCCCHHHHH
Q ss_conf 68999872688899-9999999974899688899
Q T0595 80 KAAALEAMKDYTKA-MDVYQKALDLDSSCKEAAD 112 (123)
Q Consensus 80 lg~~~~~~~~~~~A-~~~~~~al~l~p~~~~a~~ 112 (123)
++.+...+|+..++ .+.+.+....+|+++-...
T Consensus 241 liv~~~~~gk~~e~~~~~l~ql~~~~p~h~~~~~ 274 (290)
T PF04733_consen 241 LIVCSQHLGKPDEAAERYLSQLKQSHPEHPLLKD 274 (290)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999399657899999999864888679999
No 4
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer . While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins . For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi . Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes . Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerize, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex . More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005198 structural molecule activity, 0005515 protein binding, 0008565 protein transporter activity, 0006461 protein complex assembly, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat
Probab=98.96 E-value=5.2e-09 Score=63.26 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=79.5
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99987078889999999885316653023344455653321--1110000111000000000011334689998726888
Q T0595 14 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 91 (123)
Q Consensus 14 ~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 91 (123)
.++...++.+.|...+..+.+.+++........+.+.+..| ++++|...|+...+..|.++..+..+|.+++.+|+|+
T Consensus 139 qi~l~~~r~d~A~~~l~~~~~~~~D~~l~qla~a~v~l~~g~~~~~~A~~if~el~~~~~~~~~~l~g~A~~~l~~~~~~ 218 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQWDEDSTLTQLAEAWVNLAVGGEKYQEAFYIFEELSQKFPSTPLLLNGLAVCHLQLGRYE 218 (290)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99998386999999999977369745999999999999865122999999999998757897899999999998818999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999997489968889999999975
Q T0595 92 KAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123)
Q Consensus 92 ~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123)
+|...++++++.+|++++++-++.-+...
T Consensus 219 eAe~~L~eaL~~d~~~~~~l~Nliv~~~~ 247 (290)
T PF04733_consen 219 EAEELLEEALDKDPNDPDTLANLIVCSQH 247 (290)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999986499998999999999999
No 5
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria .; GO: 0005515 protein binding, 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1zu2_A.
Probab=98.91 E-value=1.9e-09 Score=65.57 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf 88999999988531665302334445565332----------11110000111000000000011334689998726---
Q T0595 22 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL----------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK--- 88 (123)
Q Consensus 22 ~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--- 88 (123)
|+.|.+.++.+...+|.+++.+.+=|.+++.+ ..+++|+.-++.||.++|+.+++++++|.++...+
T Consensus 7 FE~Ar~~ae~~y~~nP~DadnL~rWGgALlELsqf~~~~e~~~mi~dAisKlEeAL~I~P~khdAlw~lGnA~ts~afl~ 86 (186)
T PF06552_consen 7 FEQARKNAEAAYARNPLDADNLTRWGGALLELSQFQQGPESKKMIEDAISKLEEALKINPDKHDALWCLGNALTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHH----HHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH---HHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999872973489999999999999852474357999999999999998159842889999999999998864
Q ss_pred --------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf --------88899999999997489968889999999975
Q T0595 89 --------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123)
Q Consensus 89 --------~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123)
.|++|..+|++++..+|+|.-.+..+..+..+
T Consensus 87 ~d~~~A~~~F~kA~~~fq~Av~~~P~Ne~YrksLe~~~ka 126 (186)
T PF06552_consen 87 PDTDEAEEYFEKAAKYFQQAVDEDPNNELYRKSLEMTAKA 126 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 7677899899999999999985599708999999998766
No 6
>PF10300 IML2: Putative mitochondrial outer membrane protein
Probab=98.45 E-value=3.6e-07 Score=53.64 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1128999999999987078889999999885-31665----302334445565332111100001110000000000113
Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAI-KRNPK----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 77 (123)
Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai-~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 77 (123)
|+.+.-+...|.....+|+.++|+..|+.++ ..... ...+++.+|.|+..+++|++|..++.+.++.++ ++.++
T Consensus 259 P~s~l~l~~~gr~~~~~g~~~~Ai~~~~~al~~~~~~~kQ~~~l~~fEla~~~~~~~~w~~A~~~f~~L~~~s~-WSka~ 337 (466)
T PF10300_consen 259 PNSALWLFFEGRMERLKGNLEEAIELLESALDESQSEMKQLHHLCYFELAWCYMFLHDWEEAADYFERLSDESS-WSKAF 337 (466)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHH
T ss_conf 99476999987999982899999999999987351106889999999999999998139999999999998184-07999
Q ss_pred --HHHHHHHHHHCCH-------HHHHHHHHHHHHHCCC
Q ss_conf --3468999872688-------8999999999974899
Q T0595 78 --TRKAAALEAMKDY-------TKAMDVYQKALDLDSS 106 (123)
Q Consensus 78 --~~lg~~~~~~~~~-------~~A~~~~~~al~l~p~ 106 (123)
|..|.|+..+++. ++|.+.+.++-.+-.+
T Consensus 338 Y~Y~~a~c~~~~~~~~~~~~~~~~a~~~~~~vp~l~~k 375 (466)
T PF10300_consen 338 YAYLAACCLLELYREEEAKEYKEKAEELFKKVPSLKQK 375 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998732320234699999999865887613
No 7
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production.; PDB: 2fez_A 2ff4_B.
Probab=98.25 E-value=2.1e-06 Score=49.66 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987078889999999885316653----------------------0233444556533211110000111
Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----------------------AKLYSNRAACYTKLLEFQLALKDCE 64 (123)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (123)
......|......++...++..+.+++.+.... ..++..++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~L~~~~~~~W~~~~r~~l~~~~~~~~~~la~~~~~~g~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALIAEARAAARAGDPEQAIELLEEALALYRGDFLPDFDDEDWVEEERERLRELYLEALERLAEALLELGDYEEALELLE 86 (146)
T ss_dssp HHHHH---HHHH---HHHHHHHHHHHHTT----TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999987789989999999999987089888988742899999999999999999999999988799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 000000000011334689998726888999999999974
Q T0595 65 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 65 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
+++.++|.+..+|..+..++...|+..+|+..|+++...
T Consensus 87 ~~l~~dP~~E~~~~~lm~a~~~~G~~~~Al~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALELDPYDEEAYRLLMRALARLGRRAEALRAYERLRRA 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHH---HHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999878998999999999999887999999999999999
No 8
>PF10300 IML2: Putative mitochondrial outer membrane protein
Probab=98.15 E-value=8.1e-06 Score=46.55 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=83.3
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHCCHHH
Q ss_conf 70788899999998853166530233444556533211110000111000-000000----0113346899987268889
Q T0595 18 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI-QLEPTF----IKGYTRKAAALEAMKDYTK 92 (123)
Q Consensus 18 ~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~----~~~~~~lg~~~~~~~~~~~ 92 (123)
...+..+|...+++.....|+++..+...|.++...|+.++|++.++.++ ...... .-.++.+|.++..+++|++
T Consensus 240 ~~~~~~~a~~lL~~~~~~yP~s~l~l~~~gr~~~~~g~~~~Ai~~~~~al~~~~~~~kQ~~~l~~fEla~~~~~~~~w~~ 319 (466)
T PF10300_consen 240 LEYPLEEAEQLLDKMRERYPNSALWLFFEGRMERLKGNLEEAIELLESALDESQSEMKQLHHLCYFELAWCYMFLHDWEE 319 (466)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66669999999999986599947699998799998289999999999998735110688999999999999999813999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999748996888999999
Q T0595 93 AMDVYQKALDLDSSCKEAADGYQR 116 (123)
Q Consensus 93 A~~~~~~al~l~p~~~~a~~~l~~ 116 (123)
|..+|.+.++..+-+...+....-
T Consensus 320 A~~~f~~L~~~s~WSka~Y~Y~~a 343 (466)
T PF10300_consen 320 AADYFERLSDESSWSKAFYAYLAA 343 (466)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999818407999999999
No 9
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria .; GO: 0005515 protein binding, 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1zu2_A.
Probab=98.14 E-value=8.8e-07 Score=51.58 Aligned_cols=83 Identities=19% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----------HHHHH
Q ss_conf 97112899999999998707----------8889999999885316653023344455653321-----------11100
Q T0595 1 MNPDLALEEKNKGNECFQKG----------DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-----------EFQLA 59 (123)
Q Consensus 1 lnP~~a~~~~~~g~~~~~~~----------~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~-----------~~~~A 59 (123)
+||++++.+.+=|..+.+.- -+++||..|++||.++|+..+++.++|.++...+ .|++|
T Consensus 20 ~nP~DadnL~rWGgALlELsqf~~~~e~~~mi~dAisKlEeAL~I~P~khdAlw~lGnA~ts~afl~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 RNPLDADNLTRWGGALLELSQFQQGPESKKMIEDAISKLEEALKINPDKHDALWCLGNALTSLAFLTPDTDEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHH----HHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH---HHHHHHHH---HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 29734899999999999998524743579999999999999981598428899999999999988647677899899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001110000000000113346899
Q T0595 60 LKDCEECIQLEPTFIKGYTRKAAA 83 (123)
Q Consensus 60 ~~~~~~al~~~p~~~~~~~~lg~~ 83 (123)
..+|++|+..+|++.-....+-.+
T Consensus 100 ~~~fq~Av~~~P~Ne~YrksLe~~ 123 (186)
T PF06552_consen 100 AKYFQQAVDEDPNNELYRKSLEMT 123 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999985599708999999998
No 10
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur .; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2ooe_A 2ond_A 2uy1_A.
Probab=98.08 E-value=1.7e-05 Score=44.90 Aligned_cols=102 Identities=17% Similarity=0.032 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999870788899999998853166530233444556533-211110000111000000000011334689998
Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 85 (123)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 85 (123)
..|+...+...+.+..+.|-..|.+|++..+....+|..-|...+. .++.+.|...|+++++..|.+...|..-...+.
T Consensus 2 ~v~i~~~~~~~R~~g~~~aR~~f~~a~~~~~~~~~v~~~~A~~E~~~~~d~~~A~~IfE~glk~~~~~~~~~~~Yl~~l~ 81 (284)
T PF05843_consen 2 LVWIQYMRFMRRNEGIEEARKVFKRARKRGRITYEVYIAYALLEYRCNKDPKRARKIFERGLKKFPKDPDFWLQYLDFLI 81 (284)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHTSTT--THHHHHHHHHHHHCT--HHHHHHHHH----S-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 78999999999834819999999999816898899999999999997799799999999999987998899999999999
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 72688899999999997489968
Q T0595 86 AMKDYTKAMDVYQKALDLDSSCK 108 (123)
Q Consensus 86 ~~~~~~~A~~~~~~al~l~p~~~ 108 (123)
.+++.+.|...|++++..-|...
T Consensus 82 ~~~d~~~~R~lferai~~l~~~~ 104 (284)
T PF05843_consen 82 KLNDIDNARSLFERAISSLPKEK 104 (284)
T ss_dssp CTT-HHHHHHHHHHCHH---GGG
T ss_pred HCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 75988999999999998666632
No 11
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins , , . It mediates proteinprotein interactions and the assembly of multiprotein complexes . The TPR motif consists of 316 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helixturnhelix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices . The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24° within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; PDB: 2kc7_A 2kck_A 2c2l_D 2vyi_B 1ihg_A 1p5q_C 1qz2_C 1kt0_A 1kt1_A 1wao_1 ....
Probab=97.83 E-value=5.2e-06 Score=47.53 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 11334689998726888999999999974899
Q T0595 75 KGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 106 (123)
Q Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 106 (123)
.+|+++|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~~G~~~~~~~~~~~Ai~~~~~Al~l~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNCYFKLGDYDEAIEYYEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 89999999999959989999999999977849
No 12
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO. See: , . ; PDB: 2pl2_A 2if4_A.
Probab=97.82 E-value=7.2e-06 Score=46.81 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998707888999999988531665
Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK 38 (123)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~ 38 (123)
..|..+|..++.+|+|++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 33 (34)
T PF07719_consen 2 EAWYNLGYAYYKQGDYDEAIEAFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 89999999999958999999999999977849
No 13
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins , , . It mediates proteinprotein interactions and the assembly of multiprotein complexes . The TPR motif consists of 316 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helixturnhelix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices . The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24° within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; PDB: 2kc7_A 2kck_A 2c2l_D 2vyi_B 1ihg_A 1p5q_C 1qz2_C 1kt0_A 1kt1_A 1wao_1 ....
Probab=97.81 E-value=6.8e-06 Score=46.93 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999987078889999999885316653
Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 39 (123)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~ 39 (123)
|..|.++|.+++.+|+|++|+.+|+++|+++|++
T Consensus 1 A~~~~~~G~~~~~~~~~~~Ai~~~~~Al~l~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNCYFKLGDYDEAIEYYEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9899999999999599899999999999778498
No 14
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO. See: , . ; PDB: 2pl2_A 2if4_A.
Probab=97.78 E-value=6.1e-06 Score=47.17 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0113346899987268889999999999748996
Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 107 (123)
Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 107 (123)
+.+|+++|.+++.+|++++|+++|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~P~~ 34 (34)
T PF07719_consen 1 AEAWYNLGYAYYKQGDYDEAIEAFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHCCSTT-
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9899999999999589999999999999778498
No 15
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways .
Probab=97.73 E-value=0.00027 Score=38.55 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_conf 71128999999999987078889999999885316----653023344455653321111000011100000--------
Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-------- 69 (123)
Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------- 69 (123)
.++.+..|...+..+.+.|.++.|...+.++...+ +..+.+....+......|+..+|+..++..+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~a~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (351)
T PF02259_consen 142 PEELAKTWLKFAKLARKAGRFQLAESALNRLMKLNQEDSDDDPQVFLEYAKLLWAQGEREEAIQMLEELLKNYLQKDIDS 221 (351)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 47799999999999987889899999999987036532588871219999999983796899999999997676530110
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf --------------------------000001133468999872------688899999999997489968889999999
Q T0595 70 --------------------------EPTFIKGYTRKAAALEAM------KDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123)
Q Consensus 70 --------------------------~p~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123)
.+..+.++..+|.-...+ ++.++++..|.++++++|+...++...+..
T Consensus 222 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (351)
T PF02259_consen 222 NSDAELLSWLLENLEPINLENLEFENKKLKARAYLLLAKWCDSLRMKSSQENSDEILKLFKEAVKLDPNWEKAWHSWAKF 301 (351)
T ss_pred CHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 21788864200000100000000122799999999999999986432253218999999999987393039999999999
Q ss_pred HHH
Q ss_conf 975
Q T0595 118 MMA 120 (123)
Q Consensus 118 ~~~ 120 (123)
...
T Consensus 302 ~~~ 304 (351)
T PF02259_consen 302 NDK 304 (351)
T ss_pred HHH
T ss_conf 999
No 16
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur .; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2ooe_A 2ond_A 2uy1_A.
Probab=97.58 E-value=0.00041 Score=37.59 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_conf 8999999999987-07888999999988531665302334445565332111100001110000000000---1133468
Q T0595 6 ALEEKNKGNECFQ-KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---KGYTRKA 81 (123)
Q Consensus 6 a~~~~~~g~~~~~-~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg 81 (123)
...|..-|..-+. .++.+.|..-|+.+++..|.+.++|..-...+...|+.+.|-..+++++..-|... ..|-...
T Consensus 35 ~~v~~~~A~~E~~~~~d~~~A~~IfE~glk~~~~~~~~~~~Yl~~l~~~~d~~~~R~lferai~~l~~~~~~~~l~~~~~ 114 (284)
T PF05843_consen 35 YEVYIAYALLEYRCNKDPKRARKIFERGLKKFPKDPDFWLQYLDFLIKLNDIDNARSLFERAISSLPKEKQSKKLWKKYI 114 (284)
T ss_dssp THHHHHHHHHHHHCT--HHHHHHHHH----S-TT-HHHHHHHHHHHHCTT-HHHHHHHHHHCHH---GGG-BHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999997799799999999999987998899999999999759889999999999986666325999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 999872688899999999997489968889
Q T0595 82 AALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123)
Q Consensus 82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123)
..-...|+.+.+...++++.++-|......
T Consensus 115 ~fE~~~G~~~~v~~v~~r~~~~~~~~~~~~ 144 (284)
T PF05843_consen 115 EFESKYGDLESVRKVEKRAEELFPEDPSLE 144 (284)
T ss_dssp HHHHH---HHHHHHHHHHHHHHTTT--HHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999983989999999999999777842899
No 17
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production.; PDB: 2fez_A 2ff4_B.
Probab=97.54 E-value=4.1e-05 Score=42.84 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 128999999999987078889999999885316653023344455653321111000011100000
Q T0595 4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 69 (123)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 69 (123)
.....+..++..+...|++++|+..+++++..+|.+..+|..+..++...|+..+|+..|+++...
T Consensus 60 ~~~~~~~~la~~~~~~g~~~~a~~~~~~~l~~dP~~E~~~~~lm~a~~~~G~~~~Al~~Y~~~~~~ 125 (146)
T PF03704_consen 60 LYLEALERLAEALLELGDYEEALELLERALELDPYDEEAYRLLMRALARLGRRAEALRAYERLRRA 125 (146)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999999988799999999999999878998999999999999887999999999999999
No 18
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region
Probab=97.53 E-value=8.3e-05 Score=41.25 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112899999999998707888999999988531665302---33444556533211110000111000000
Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---LYSNRAACYTKLLEFQLALKDCEECIQLE 70 (123)
Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 70 (123)
.+.+..+.++|..++..+++++|+..+.++++..++.++ ++.+++.+|..+|+|++++....+-|++.
T Consensus 3 q~~akq~ie~Gl~lYq~~~~~~Al~~W~kal~~~~~~~~~~~~lg~L~~A~~e~Gky~e~l~~a~~ql~la 73 (80)
T PF10579_consen 3 QDQAKQQIERGLRLYQQNQYQKALSIWRKALSKTCDPPDRFRALGYLATAYQEMGKYQEMLAFAIQQLELA 73 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06899999999999986618999999999998747908999999899999999877999999999999999
No 19
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225)
Probab=97.44 E-value=0.00027 Score=38.60 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=69.5
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--H----
Q ss_conf 99987078889999999885316-------653023344455653321111-------000011100000000--0----
Q T0595 14 NECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQ-------LALKDCEECIQLEPT--F---- 73 (123)
Q Consensus 14 ~~~~~~~~~~~Ai~~~~~ai~~~-------p~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~--~---- 73 (123)
..+-...++++|+..|..||... ..-+.++..+|.+|..+|+.+ .|...|.++++..+. .
T Consensus 85 ~~~~~~r~~~~Ai~~YkLAll~~~~~~~~~s~~A~~~lriAWlYR~~~d~~~E~~~l~~Al~~y~~ay~~e~~~~~~~~~ 164 (214)
T PF09986_consen 85 RDFSGERTYDEAIESYKLALLCYQLRGEKPSEKAYLYLRIAWLYRDLGDEEKEKRFLKKALEIYEKAYENESFPIEGMDE 164 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 78765477999999999999999981798489999999999999962888899999999999999998426776555118
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 01133468999872688899999999997489968
Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 108 (123)
Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~ 108 (123)
....+.+|.+..++|++++|+..|.+++.....+.
T Consensus 165 ~~l~YLlGeL~rrlG~~~eA~~wfs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ARLLYLLGELNRRLGNYEEALRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 88999999999995899999999999963887887
No 20
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.39 E-value=0.00053 Score=37.03 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=48.3
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---------------
Q ss_conf 9998707888999999988531665302334445565332111100001110000-------000---------------
Q T0595 14 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-------LEP--------------- 71 (123)
Q Consensus 14 ~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~~p--------------- 71 (123)
..+.+..+++.-|..-.+|++++|+-+++|..++.-.- ....+++..++++++ .+.
T Consensus 176 q~AWrErn~~~RIklAkkALeisP~CAdAYILLAEEea--~ti~Eae~L~kqAVkAgE~~Lrks~~~q~~g~~~e~~~rr 253 (539)
T PF04184_consen 176 QDAWRERNPKRRIKLAKKALEISPDCADAYILLAEEEA--TTINEAEELYKQAVKAGENNLRKSQFQQHQGQFHEALHRR 253 (539)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHC
T ss_conf 99986369999999999998504443588999866530--4679999999999999987746256663211245566642
Q ss_pred -H--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
Q ss_conf -0--0011334689998726888999999999974899--6888999999997
Q T0595 72 -T--FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMM 119 (123)
Q Consensus 72 -~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~l~~~~~ 119 (123)
. .+.+-.++|.|.-++|+.++|++.++..++..|. +..++..+-.+++
T Consensus 254 d~~~~~y~rrrLAmcawklG~~~EAIk~~rdLlke~p~~d~l~Ir~nLie~LL 306 (539)
T PF04184_consen 254 DTNPLVYARRRLAMCAWKLGRRREAIKMMRDLLKEFPNMDNLNIRENLIEALL 306 (539)
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 35236999999999999828689999999999974897313459999999999
No 21
>PF10602 RPN7: 26S proteasome subunit RPN7
Probab=97.32 E-value=0.00066 Score=36.54 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q ss_conf 899999999998707888999999988531665---30233444556533211110000111000000000------011
Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKG 76 (123)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 76 (123)
..++..+|..+.+.|+++.|+++|.++....+. ..+++.++..+.+..+++..+.....++-..-... ...
T Consensus 36 r~~~~~la~~Y~~iGd~~~A~~~y~~~~~~~~s~~~~id~~l~~irv~i~~~d~~~v~~~l~ka~~~~~~~~d~~~~~rl 115 (177)
T PF10602_consen 36 RMAYLDLADYYAKIGDLENALKAYERAREYCTSPGHKIDMCLNIIRVAIFFGDWDHVQKYLNKAKSLLEKGGDWERKNRL 115 (177)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999982899999999999998749878999999999999999758999999999999877705758799999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 33468999872688899999999997489
Q T0595 77 YTRKAAALEAMKDYTKAMDVYQKALDLDS 105 (123)
Q Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 105 (123)
..-.|..+...++|.+|.+.|-.++..-+
T Consensus 116 k~~~gl~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLYYLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999986389999999980777656
No 22
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.29 E-value=0.00082 Score=36.05 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----------------------C--HHHHHHHHHHHHHHHH
Q ss_conf 97112899999999998707888999999988531665-----------------------3--0233444556533211
Q T0595 1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------------------D--AKLYSNRAACYTKLLE 55 (123)
Q Consensus 1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~-----------------------~--~~~~~~~a~~~~~~~~ 55 (123)
+||+-|.+|+-++.... ....++...|.++++.... + +.+-..+|+|..++|+
T Consensus 197 isP~CAdAYILLAEEea--~ti~Eae~L~kqAVkAgE~~Lrks~~~q~~g~~~e~~~rrd~~~~~y~rrrLAmcawklG~ 274 (539)
T PF04184_consen 197 ISPDCADAYILLAEEEA--TTINEAEELYKQAVKAGENNLRKSQFQQHQGQFHEALHRRDTNPLVYARRRLAMCAWKLGR 274 (539)
T ss_pred CCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 04443588999866530--4679999999999999987746256663211245566642352369999999999998286
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 11000011100000000--001133468999872688899999999997
Q T0595 56 FQLALKDCEECIQLEPT--FIKGYTRKAAALEAMKDYTKAMDVYQKALD 102 (123)
Q Consensus 56 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 102 (123)
-++||+.+...++..|. .-..+.++-.++...+.+.++...+.+--+
T Consensus 275 ~~EAIk~~rdLlke~p~~d~l~Ir~nLie~LLe~q~yad~q~lLakYdd 323 (539)
T PF04184_consen 275 RREAIKMMRDLLKEFPNMDNLNIRENLIEALLEEQRYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999997489731345999999999984136999999985424
No 23
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways .
Probab=97.10 E-value=0.00088 Score=35.88 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----------------------------------CHHHHHHHHHHH
Q ss_conf 2899999999998707888999999988531665----------------------------------302334445565
Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------------------------------DAKLYSNRAACY 50 (123)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~----------------------------------~~~~~~~~a~~~ 50 (123)
.+....+.+.....+|+-.+|+..+...+...+. .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~w~ 262 (351)
T PF02259_consen 183 DPQVFLEYAKLLWAQGEREEAIQMLEELLKNYLQKDIDSNSDAELLSWLLENLEPINLENLEFENKKLKARAYLLLAKWC 262 (351)
T ss_pred CCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87121999999998379689999999999767653011021788864200000100000000122799999999999999
Q ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHCCC
Q ss_conf 332------111100001110000000000113346899987268----------------88999999999974899
Q T0595 51 TKL------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD----------------YTKAMDVYQKALDLDSS 106 (123)
Q Consensus 51 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------------~~~A~~~~~~al~l~p~ 106 (123)
..+ +..++++..+..+++.+|++..+|+..|..+..+-. ...|+..|-+++.+.|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~yl~al~~~~~ 340 (351)
T PF02259_consen 263 DSLRMKSSQENSDEILKLFKEAVKLDPNWEKAWHSWAKFNDKLLESDKNEKERMSEDRSEFLEQAIEGYLKALSLGPK 340 (351)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 986432253218999999999987393039999999999999998725322002268999999999999999974899
No 24
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK)
Probab=97.06 E-value=0.005 Score=31.94 Aligned_cols=107 Identities=15% Similarity=-0.009 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11289999999999870788899999998853166530233444556533211110000111000000000011334689
Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 82 (123)
Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 82 (123)
+..+..++.........++.+++-..++-.--+.|+.+.+-..-|.++...|++.+|+..++...+..|.++.+--.++.
T Consensus 7 ~~~v~gLie~~~~Al~~~d~~Dae~lL~aLrvLrP~~~e~~~~~g~l~i~r~~w~eA~rvlr~l~~~~~~~~~akALlA~ 86 (160)
T PF09613_consen 7 NAIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPENAELDLFDGWLHIVRGNWDEAIRVLRELEEDAPCFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 89999999999999804988679999999986189950123778899998377899999999850468777468999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99872688899999999997489968889
Q T0595 83 ALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123)
Q Consensus 83 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123)
|++.+++.+- ...-.++++-++ ++++.
T Consensus 87 CL~a~~Dp~W-r~~A~~vle~~~-d~~a~ 113 (160)
T PF09613_consen 87 CLFALGDPEW-RRYADEVLESGA-DPDAR 113 (160)
T ss_pred HHHHCCCHHH-HHHHHHHHHCCC-CHHHH
T ss_conf 9986389889-999999986099-87899
No 25
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.73 E-value=0.0019 Score=34.15 Aligned_cols=93 Identities=20% Similarity=0.310 Sum_probs=77.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999870788899999998853166530---233444556533211-----------1100001110000000000113
Q T0595 12 KGNECFQKGDYPQAMKHYTEAIKRNPKDA---KLYSNRAACYTKLLE-----------FQLALKDCEECIQLEPTFIKGY 77 (123)
Q Consensus 12 ~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 77 (123)
++..++..|++-+|++..+..|....++. ..+..-|.++..+.. .-.|++++.++..+.|..+..+
T Consensus 2 ~A~~~~~~GnhiKAL~iieD~i~~h~~~~~~~~~h~~QG~if~~lA~~ten~d~K~~~l~~sVe~~s~~~~Ls~~sA~sL 81 (111)
T PF04781_consen 2 KALDYFARGNHIKALEIIEDLISKHGNDESSWLLHRLQGTIFVKLAKKTENPDVKFRYLLGSVECFSKAVELSPDSANSL 81 (111)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 27899885572999999999998711554048999999599999999715811779999998999988651287899999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 346899987268889999999999748
Q T0595 78 TRKAAALEAMKDYTKAMDVYQKALDLD 104 (123)
Q Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123)
+.+|.-+-...-|++++..-+++|.+.
T Consensus 82 ~~La~~l~s~~~Ykk~v~kak~aLsv~ 108 (111)
T PF04781_consen 82 FELADQLGSVKYYKKAVKKAKRALSVT 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999998713889999999999772354
No 26
>PF08424 DUF1740: Protein of unknown function (DUF1740); InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.22 E-value=0.018 Score=29.06 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHH----------
Q ss_conf 11289999999999870788899999998853166530233444556533-21--111000011100000----------
Q T0595 3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LL--EFQLALKDCEECIQL---------- 69 (123)
Q Consensus 3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~-~~--~~~~A~~~~~~al~~---------- 69 (123)
|+...-+...=....+.-+-++-...+++++..+|.++.+|...-..... .. .++.+...|.++|..
T Consensus 69 p~~~~Lll~~l~~~~~~w~~~~l~~~We~~l~~~p~~~~LW~~yL~~~q~~~~~f~~~~v~~~y~~cl~~l~~~~~~~~~ 148 (236)
T PF08424_consen 69 PDNERLLLGYLEEGEKLWDTKKLASRWEKVLKENPGSYSLWREYLDFRQGDFSRFTVEDVRKIYEKCLRSLSAAQDGEIT 148 (236)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99799999999999872788999999999999879981899999999973101563999999999999998774035444
Q ss_pred --------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf --------00000113346899987268889999999999748
Q T0595 70 --------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 104 (123)
Q Consensus 70 --------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123)
+......+.++.....+.|..+.|+..++-.++++
T Consensus 149 ~~~~~~~~e~~~l~lflr~~~flrqaG~~E~A~al~QA~lE~n 191 (236)
T PF08424_consen 149 SHPDSPELEEIMLYLFLRLCLFLRQAGHTERAVALWQALLEFN 191 (236)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5666530468999999999999998595999999999999887
No 27
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region
Probab=95.80 E-value=0.0052 Score=31.82 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 0233444556533211110000111000000000---011334689998726888999999999974
Q T0595 40 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
+.-+..+|.-++..+++++|+..++++++..++. ..++-.++.+|..+|+|.+++..-.+-+++
T Consensus 6 akq~ie~Gl~lYq~~~~~~Al~~W~kal~~~~~~~~~~~~lg~L~~A~~e~Gky~e~l~~a~~ql~l 72 (80)
T PF10579_consen 6 AKQQIERGLRLYQQNQYQKALSIWRKALSKTCDPPDRFRALGYLATAYQEMGKYQEMLAFAIQQLEL 72 (80)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998661899999999999874790899999989999999987799999999999999
No 28
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK)
Probab=95.79 E-value=0.011 Score=30.12 Aligned_cols=79 Identities=11% Similarity=-0.053 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 3344455653321111000011100000000001133468999872688899999999997489968889999999975
Q T0595 42 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 120 (123)
Q Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 120 (123)
.+.....+-+..++.+++...+.-.--+.|..+..-..-|.+++..|+|.+|+..|+.+.+-.|.++-+.-.++-|+.+
T Consensus 12 gLie~~~~Al~~~d~~Dae~lL~aLrvLrP~~~e~~~~~g~l~i~r~~w~eA~rvlr~l~~~~~~~~~akALlA~CL~a 90 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPENAELDLFDGWLHIVRGNWDEAIRVLRELEEDAPCFPYAKALLALCLFA 90 (160)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999998049886799999999861899501237788999983778999999998504687774689999999986
No 29
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones .; PDB: 2vgx_B 2vgy_A.
Probab=95.44 E-value=0.0062 Score=31.43 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHH--HHHHHCCC
Q ss_conf 13346899987268889999999--99974899
Q T0595 76 GYTRKAAALEAMKDYTKAMDVYQ--KALDLDSS 106 (123)
Q Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~--~al~l~p~ 106 (123)
.|+.+|..+..+|++++|++.|+ .++.++|+
T Consensus 3 ~l~~la~~~~~~g~y~~A~~~~qy~~~~~l~~~ 35 (36)
T PF07720_consen 3 SLYALAYAYYQQGKYDEAIEYYQYRQALNLDPE 35 (36)
T ss_dssp HHHHHHHHHHH---HHHHHHHHH--HHHHHTTT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 899999999987359999999889999876766
No 30
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones .; PDB: 2vgx_B 2vgy_A.
Probab=95.35 E-value=0.008 Score=30.87 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHH--HHHHCCCCC
Q ss_conf 999999999987078889999999--885316653
Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYT--EAIKRNPKD 39 (123)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~--~ai~~~p~~ 39 (123)
+.+..+|..++.+|+|++|+..|+ .++.++|+|
T Consensus 2 ~~l~~la~~~~~~g~y~~A~~~~qy~~~~~l~~~n 36 (36)
T PF07720_consen 2 ESLYALAYAYYQQGKYDEAIEYYQYRQALNLDPEN 36 (36)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHH--HHHHHTTT-
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 68999999999873599999998899998767669
No 31
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis . It is also involved in sporulation
Probab=95.33 E-value=0.05 Score=26.70 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCC-------C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 899999999998707-888999999988531665-------3-------02334445565332111100001110000--
Q T0595 6 ALEEKNKGNECFQKG-DYPQAMKHYTEAIKRNPK-------D-------AKLYSNRAACYTKLLEFQLALKDCEECIQ-- 68 (123)
Q Consensus 6 a~~~~~~g~~~~~~~-~~~~Ai~~~~~ai~~~p~-------~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-- 68 (123)
+..+++.|...+..+ +|+.|+..+++++++-+. . ..++..++.+++..+.++.... +..++.
T Consensus 35 a~~~y~~G~s~l~~~~~~~~A~~wL~~a~d~l~~~~~~~~~~~~~~eLr~~vL~~La~a~l~~~~~~s~~k-~~~~l~~l 113 (280)
T PF08631_consen 35 ARVCYNIGKSLLEKRNDYSDAVKWLQRAYDYLEKLAEMDQDSPEYSELRFSVLRLLAKAYLQWNTYESYLK-CINVLRLL 113 (280)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHH
T ss_conf 99999999999975488899999999999987355423567864887999999999999954687112999-99999998
Q ss_pred --HHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCC
Q ss_conf --000000113346899987-2688899999999997489
Q T0595 69 --LEPTFIKGYTRKAAALEA-MKDYTKAMDVYQKALDLDS 105 (123)
Q Consensus 69 --~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p 105 (123)
-.|+.+..++..=.+... .++..++.+.+.+.+..-.
T Consensus 114 ~~e~~~~~~~~~L~l~~l~~~~~~~~~~~~~L~~mi~~~~ 153 (280)
T PF08631_consen 114 EKEYPNKPELYLLALEILKKESGDEEEAEDELMRMIRNVD 153 (280)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 7636777413786699986257745789999999986255
No 32
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225)
Probab=95.31 E-value=0.0092 Score=30.54 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHCCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999987078-------88999999988531665--3----023344455653321111000011100000000
Q T0595 6 ALEEKNKGNECFQKGD-------YPQAMKHYTEAIKRNPK--D----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 72 (123)
Q Consensus 6 a~~~~~~g~~~~~~~~-------~~~Ai~~~~~ai~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 72 (123)
|..+..+|..+...|+ +..|...|.++++.+.. . ..+.+.+|.....+|++++|+..+.+++.....
T Consensus 118 A~~~lriAWlYR~~~d~~~E~~~l~~Al~~y~~ay~~e~~~~~~~~~~~l~YLlGeL~rrlG~~~eA~~wfs~vi~~~~~ 197 (214)
T PF09986_consen 118 AYLYLRIAWLYRDLGDEEKEKRFLKKALEIYEKAYENESFPIEGMDEARLLYLLGELNRRLGNYEEALRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 99999999999962888899999999999999998426776555118889999999999958999999999999638878
No 33
>PF10602 RPN7: 26S proteasome subunit RPN7
Probab=95.03 E-value=0.052 Score=26.59 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCHH
Q ss_conf 888999999988531665------302334445565332111100001110000000---00011334689998726888
Q T0595 21 DYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP---TFIKGYTRKAAALEAMKDYT 91 (123)
Q Consensus 21 ~~~~Ai~~~~~ai~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~ 91 (123)
..++.+..++..|+-..+ -..++..+|..|...|+++.|+..|.++.+... .-.+.++++-.+....+++.
T Consensus 11 ~~~~~~~~L~~~lk~~~~n~~~e~ir~~~~~la~~Y~~iGd~~~A~~~y~~~~~~~~s~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 11 KNQEELEELEAELKDAKENLGKESIRMAYLDLADYYAKIGDLENALKAYERAREYCTSPGHKIDMCLNIIRVAIFFGDWD 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999998713609999999999999998289999999999999874987899999999999999975899
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999974899
Q T0595 92 KAMDVYQKALDLDSS 106 (123)
Q Consensus 92 ~A~~~~~~al~l~p~ 106 (123)
.+...+.++-.+-..
T Consensus 91 ~v~~~l~ka~~~~~~ 105 (177)
T PF10602_consen 91 HVQKYLNKAKSLLEK 105 (177)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999987770
No 34
>PF04910 DUF654: Protein of unknown function, DUF654; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs , . Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions .
Probab=94.08 E-value=0.098 Score=25.14 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--------------C------------CCCHH---HHHHHHHHHHH
Q ss_conf 7112899999999998707888999999988531--------------6------------65302---33444556533
Q T0595 2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKR--------------N------------PKDAK---LYSNRAACYTK 52 (123)
Q Consensus 2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~--------------~------------p~~~~---~~~~~a~~~~~ 52 (123)
+|-.+..+..++.++..+|++..|-+..++||-. + ++|-. ++..-...+.+
T Consensus 36 ~PYHvdsLLqls~i~~~~gd~~~a~~lieraL~~~e~~~h~~F~~~~~~~~~g~~rL~~~~~eNR~fflaL~r~i~~L~~ 115 (358)
T PF04910_consen 36 NPYHVDSLLQLSEIYRRQGDHAMANDLIERALFAFERAFHPSFSPFFSNLTSGNCRLDYRRPENRQFFLALFRYIQNLGR 115 (358)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99838999999999998588999999999999999876445443211456778631687643467999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 21111000011100000000-0011-3346899987268889999999
Q T0595 53 LLEFQLALKDCEECIQLEPT-FIKG-YTRKAAALEAMKDYTKAMDVYQ 98 (123)
Q Consensus 53 ~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~~~~~~A~~~~~ 98 (123)
.|-+..|.+.|+..+++||. ++-+ .+.+-....+.++|+-=+...+
T Consensus 116 RGc~rTALE~~KLLLSLDp~~DP~g~ll~ID~~ALrs~ey~~Li~f~~ 163 (358)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGALLCIDYYALRSKEYDWLIDFSE 163 (358)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 663999999999998169998835229999999985487889999998
No 35
>PF10345 Cohesin_load: Cohesin loading factor
Probab=93.84 E-value=0.12 Score=24.71 Aligned_cols=98 Identities=20% Similarity=0.085 Sum_probs=46.3
Q ss_pred HHHHHHHHH-HHHHHCCHHHHHHHHHHHHHCCCC--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q ss_conf 899999999-998707888999999988531665--302----3344455653321111000011100000000---001
Q T0595 6 ALEEKNKGN-ECFQKGDYPQAMKHYTEAIKRNPK--DAK----LYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIK 75 (123)
Q Consensus 6 a~~~~~~g~-~~~~~~~~~~Ai~~~~~ai~~~p~--~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~ 75 (123)
+.....+|. .+.+..++++|..++++++.+... ..+ +...++.++.+.|... |+..++++|+.-.+ +..
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~l~d~k~~~~~Ll~~~~~k~~~~~-a~~~l~~~i~~~~~~~~~~~ 137 (608)
T PF10345_consen 59 AKTRLRLARILLEETENLDLAETYLSKAILLCEQNGLFDLKFRCEFLLARIYQKTNPKA-ALKNLNKCIEDYENYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999998268999999999998762268828899999999999998619488-99999999998753324369
Q ss_pred HH---HHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 13---346899987268889999999999748
Q T0595 76 GY---TRKAAALEAMKDYTKAMDVYQKALDLD 104 (123)
Q Consensus 76 ~~---~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123)
.| +.+.......+++..|.+.++....+.
T Consensus 138 ~~~f~~l~i~l~l~~~d~~~A~~~L~~~~~~a 169 (608)
T PF10345_consen 138 VWAFRFLRIQLALAHKDYQRALEILQKLSQLA 169 (608)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999984168999999999999875
No 36
>PF10858 DUF2659: Protein of unknown function (DUF2659)
Probab=93.80 E-value=0.12 Score=24.68 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HHHHHH
Q ss_conf 9999999998707888999999988531--6653023344455653321111000011100000-----00---000113
Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EP---TFIKGY 77 (123)
Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p---~~~~~~ 77 (123)
+..+..-...+.|+|-++.+.+++.+.. .|+....|..++.|++-..+...-+++-.+.++. +| -++.+-
T Consensus 95 A~Leqva~ki~~~~~~e~k~l~n~Iia~k~ysei~~~yarI~~~~l~iDd~nl~~~dk~Kl~k~l~~~~d~~~pfwatA~ 174 (220)
T PF10858_consen 95 AALEQVAIKISQGKFSEAKELLNKIIANKEYSEISTSYARIAWCALVIDDQNLDIDDKEKLVKYLNYFDDPKKPFWATAT 174 (220)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999972033278999999998521257999999999989961137887756699999985301587751799999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 346899987268889999999999748996888999999997
Q T0595 78 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123)
Q Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123)
.-+|..-.+.|+..+|.+.|+..+.-.-.+... ..-++++.
T Consensus 175 i~~ai~~~k~~~~~~A~k~l~~l~~s~~~s~~l-kdqAk~ll 215 (220)
T PF10858_consen 175 IIKAIWDIKNNMKDQAEKYLKNLLASNNVSDNL-KDQAKALL 215 (220)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH-HHHHHHHH
T ss_conf 999999987499169999999998844357788-88999998
No 37
>PF10255 Paf67: RNA polymerase I-associated factor PAF67
Probab=93.60 E-value=0.026 Score=28.17 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 444556533211110000111000000---------000011334689998726888999999999974
Q T0595 44 SNRAACYTKLLEFQLALKDCEECIQLE---------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
..+..++--+|+|..|+...+- |+++ |.+...++..|-+|+.+++|.+|+..|.+++-.
T Consensus 126 igLlRlhvLLGDY~~Alk~l~~-idl~~~~l~~~V~~~~vs~~Y~vGFaYlMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRLHVLLGDYYTALKVLEP-IDLNKKGLYSKVPACHVSTYYYVGFAYLMLRRYNDAIRIFSQILLY 193 (404)
T ss_pred HHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998750476999997612-6833020124565403674208889999997799999999999999
No 38
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.58 E-value=0.096 Score=25.20 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 45565332111100001110000000000---113346899987268-----------8899999999997489968889
Q T0595 46 RAACYTKLLEFQLALKDCEECIQLEPTFI---KGYTRKAAALEAMKD-----------YTKAMDVYQKALDLDSSCKEAA 111 (123)
Q Consensus 46 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~ 111 (123)
++.-++..|++-+|+...+..+.....+. ..+...|.++..+.. .-.|+++|.++..+-|......
T Consensus 2 ~A~~~~~~GnhiKAL~iieD~i~~h~~~~~~~~~h~~QG~if~~lA~~ten~d~K~~~l~~sVe~~s~~~~Ls~~sA~sL 81 (111)
T PF04781_consen 2 KALDYFARGNHIKALEIIEDLISKHGNDESSWLLHRLQGTIFVKLAKKTENPDVKFRYLLGSVECFSKAVELSPDSANSL 81 (111)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 27899885572999999999998711554048999999599999999715811779999998999988651287899999
Q ss_pred HHH
Q ss_conf 999
Q T0595 112 DGY 114 (123)
Q Consensus 112 ~~l 114 (123)
..+
T Consensus 82 ~~L 84 (111)
T PF04781_consen 82 FEL 84 (111)
T ss_pred HHH
T ss_conf 999
No 39
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer . While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins . For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi . Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes . Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerize, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region . More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005198 structural molecule activity, 0005515 protein binding, 0008565 protein transporter activity, 0006461 protein complex assembly, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat
Probab=91.44 E-value=0.23 Score=23.21 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 011334689998726888999999999974
Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
+.-|-++|......|+++-|.++|+++-+.
T Consensus 348 ~~~Wk~Lg~~AL~~g~~~lAe~c~~k~~d~ 377 (444)
T PF04053_consen 348 PEKWKRLGDAALKQGNFELAEECYQKAKDF 377 (444)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCH
T ss_conf 889999999999859969999999975062
No 40
>PF10516 SHNi-TPR: SHNi-TPR
Probab=90.91 E-value=0.09 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 33468999872688899999999997
Q T0595 77 YTRKAAALEAMKDYTKAMDVYQKALD 102 (123)
Q Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~al~ 102 (123)
|..+|.+....++|.+|+.+|+++|+
T Consensus 4 ~~~LGeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99878899885569999999999999
No 41
>PF10516 SHNi-TPR: SHNi-TPR
Probab=90.48 E-value=0.093 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 9999999998707888999999988531
Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123)
Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123)
.+..+|.+.+..++|++|+..|.++|.+
T Consensus 3 ~~~~LGeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 CYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9998788998855699999999999999
No 42
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.50 E-value=0.18 Score=23.76 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 4556533211110000111000000000011334689998726888999999999
Q T0595 46 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 100 (123)
Q Consensus 46 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (123)
=|.-++.+|+|.+|+-+-...-++.| ++.++-.+|.++...+.|.+|.+++...
T Consensus 468 DAeyLfs~gdY~kCy~YS~WLtkvaP-S~~~yrLlGLcL~enK~Y~EAwe~l~~L 521 (549)
T PF07079_consen 468 DAEYLFSQGDYHKCYLYSLWLTKVAP-SPLAYRLLGLCLLENKEYLEAWEYLHKL 521 (549)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48999744770030535988987289-6889999878885106589999999748
No 43
>PF11817 Foie-gras_1: Foie gras liver health family 1
Probab=89.49 E-value=0.2 Score=23.56 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 000011100000000------00113346899987268889999999999748
Q T0595 58 LALKDCEECIQLEPT------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 104 (123)
Q Consensus 58 ~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 104 (123)
..++.+.+|++.-.. -...-..+|..|+..|+++.|++.|+.+....
T Consensus 169 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~mA~ey~~~g~~~~A~~~l~~~~~~y 221 (260)
T PF11817_consen 169 LIIELLEKAYEQFKKRGQQRMASYLSLEMAEEYMRLGDYDKALKLLEPVALSY 221 (260)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999998722155999999999999998689999999999999999
No 44
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer . While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins . For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi . Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes . Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerize, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit , . This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005198 structural molecule activity, 0005515 protein binding, 0008565 protein transporter activity, 0006461 protein complex assembly, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=89.01 E-value=0.43 Score=21.77 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH--------HH--HHHHHH-------HHHHHHHHH-HHHHHHHHH--
Q ss_conf 9999999999870788899999998853166530--------23--344455-------653321111-000011100--
Q T0595 7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--------KL--YSNRAA-------CYTKLLEFQ-LALKDCEEC-- 66 (123)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~--------~~--~~~~a~-------~~~~~~~~~-~A~~~~~~a-- 66 (123)
......|..++..|+|.+|+..|...|..-|-.. .+ +..++. |.+...... ....+-.+.
T Consensus 205 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~E~~e~~~li~icreYilal~iEl~Rr~l~~~~~~~~kR~lE 284 (422)
T PF06957_consen 205 EEKLKEGYKLTTAGKFEEALEIFRSILHSIPLLVVESEEEVDEAKELIEICREYILALSIELERRELPKDDVEDQKRNLE 284 (422)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999998637799999999999997615661667779999999999999999998999985024563667899999
Q ss_pred -------HHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf -------0000000011334689-99872688899999999997489968889
Q T0595 67 -------IQLEPTFIKGYTRKAA-ALEAMKDYTKAMDVYQKALDLDSSCKEAA 111 (123)
Q Consensus 67 -------l~~~p~~~~~~~~lg~-~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 111 (123)
.+++|.+-..-++.|. ..++.++|.-|...-++.|++.|+-..+.
T Consensus 285 LaaYFT~~~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fA~rLLel~p~~~~ae 337 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHRILALRSAMSLAFKNKNYKTAASFARRLLELNPSPEVAE 337 (422)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99997327875899999999999999985219999999999986289778999
No 45
>PF10952 DUF2753: Protein of unknown function (DUF2753)
Probab=87.02 E-value=0.29 Score=22.66 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 99999999987078889999999885316653---------------02334445565332111100001110000----
Q T0595 8 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQ---- 68 (123)
Q Consensus 8 ~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~---- 68 (123)
.+-.+|+.+++.+++-.||.+|.+|+.+..+- +....|+|..+..+|+.+-.+.+++.|-+
T Consensus 3 rhtllAd~a~~~~~~~~ai~hYQqAlslse~l~~~~~~~~~d~l~i~ViscHNLA~fwr~~~d~~yeLkYLqlAse~Vlt 82 (140)
T PF10952_consen 3 RHTLLADQAFKEGDPLRAILHYQQALSLSEELDESNEDDLDDLLTISVISCHNLADFWRSQGDSEYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 47888999875666899999999999999998521310379999999999824999999859968889999998999998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 00000011334689998726888999999
Q T0595 69 LEPTFIKGYTRKAAALEAMKDYTKAMDVY 97 (123)
Q Consensus 69 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (123)
+-|..+..- -....-.+|=-..|+-.|
T Consensus 83 LipqCp~~~--c~sfi~slgcc~~aLidF 109 (140)
T PF10952_consen 83 LIPQCPNSE--CESFIDSLGCCKKALIDF 109 (140)
T ss_pred HCCCCCCCC--HHHHHHHHHCCHHHHHHH
T ss_conf 664799833--699987630118999999
No 46
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2v6x_A 1yxr_A 2k3w_A 2jq9_A 2jqk_A 1wr0_A 2jqh_A 2cpt_A 2v6y_A 3eab_A ....
Probab=86.76 E-value=0.36 Score=22.22 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 2899999999998707888999999988531
Q T0595 5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR 35 (123)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~ 35 (123)
.|..+...|..+-..|+|++|+.+|.+||..
T Consensus 4 ~A~~~~~~Av~~D~~g~~~eA~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKQAVEADEAGKYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8999999999988878999999999999999
No 47
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.94 E-value=0.67 Score=20.77 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCHHHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 711289--9999999998707888999999988531-66530-233444--55653321111000011100000000---
Q T0595 2 NPDLAL--EEKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDA-KLYSNR--AACYTKLLEFQLALKDCEECIQLEPT--- 72 (123)
Q Consensus 2 nP~~a~--~~~~~g~~~~~~~~~~~Ai~~~~~ai~~-~p~~~-~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~--- 72 (123)
||-.+. ....++..+|...+|..|...|...+.. .|+.. ..+..+ |..++..-++++|.+.+++.+...-.
T Consensus 125 ~p~~v~~~~~~~~a~~l~~~~~y~aA~~~l~~l~~rl~~~~~y~~~~~l~~~y~~WD~fd~~~A~~~Lek~l~~~~~l~~ 204 (379)
T PF09670_consen 125 NPYEVFGEREWRQAKELFNRYDYGAAERILEELLRRLPGEEEYELYKDLCEGYLAWDRFDHEEAYDYLEKLLKKLLQLNA 204 (379)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999879889999999980786999999999997579505799999999999998754899999999986634301155
Q ss_pred HHH-----------------------------HHHHHHH------HHHHHCCHHHHHHHHHHHHHH
Q ss_conf 001-----------------------------1334689------998726888999999999974
Q T0595 73 FIK-----------------------------GYTRKAA------ALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 73 ~~~-----------------------------~~~~lg~------~~~~~~~~~~A~~~~~~al~l 103 (123)
+.+ .+..+.. --...|+|+.|.--+-+++++
T Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RR~~~grydda~~rlYR~lEl 270 (379)
T PF09670_consen 205 EREGLEKLVEVLRALESILPSKEGARNRGNKFYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 799999999999988720654776331444309999999999899877656888999999999999
No 48
>PF11207 DUF2989: Protein of unknown function (DUF2989)
Probab=83.60 E-value=0.56 Score=21.18 Aligned_cols=50 Identities=18% Similarity=-0.005 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHHCC
Q ss_conf 00113346899987268889999999999748-9---968889999999975429
Q T0595 73 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-S---SCKEAADGYQRCMMAQYN 123 (123)
Q Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~-p---~~~~a~~~l~~~~~~q~n 123 (123)
.+...+.+|.. +...+..+++..+.+++++. + -++++...++-+.+.+.|
T Consensus 140 ~~elq~aLAty-Y~k~d~~Kt~~Ll~~~L~l~~~~~~~n~~il~sLasiy~~~~~ 193 (203)
T PF11207_consen 140 DPELQYALATY-YTKRDPDKTIQLLYHALELSQEDDDFNPEILLSLASIYQKQGN 193 (203)
T ss_pred CHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89999999999-9804889999999999984388777798999999999987132
No 49
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) .
Probab=82.15 E-value=0.33 Score=22.37 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 1334689998726888999999
Q T0595 76 GYTRKAAALEAMKDYTKAMDVY 97 (123)
Q Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~ 97 (123)
+++++|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~~A~~~~ 24 (26)
T PF07721_consen 3 ALYNLARALLAQGRPDEARALL 24 (26)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
T ss_conf 8899999999959999999997
No 50
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis .
Probab=66.96 E-value=2.6 Score=17.67 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 011334689998726888999999999974
Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
.......|.+-..-|+++.|.+...++.+.
T Consensus 85 a~~al~~Gl~a~~~G~~~~A~k~l~~a~~~ 114 (134)
T PF07219_consen 85 AYRALSRGLIALAEGDWQRAEKLLAKAAKL 114 (134)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999999789999999999987766
No 51
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit
Probab=62.83 E-value=3.2 Score=17.23 Aligned_cols=45 Identities=11% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 111100001110000000000113346899987268889999999
Q T0595 54 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 98 (123)
Q Consensus 54 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (123)
+..-+|+..++.++..+|.++...+.+-.+|..+|-...|.+.|.
T Consensus 197 ~~l~~ai~lLE~~l~~sp~n~~~~LlLv~lY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 197 SYLLQAIALLEHGLKKSPHNYQLRLLLVRLYSLLGAGSLALEHYK 241 (365)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999986599779999999999998699799999999
No 52
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport . Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors , . Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion , . The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase . Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process . The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins . This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat . More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 1b89_A.
Probab=59.06 E-value=3.7 Score=16.86 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=67.5
Q ss_pred HHHHHHCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q ss_conf 99987078889999999885-3166530233444556533211110000111000000000-------011334689998
Q T0595 14 NECFQKGDYPQAMKHYTEAI-KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------IKGYTRKAAALE 85 (123)
Q Consensus 14 ~~~~~~~~~~~Ai~~~~~ai-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~ 85 (123)
..+.+.+..+..+.+++..+ .....++.....+..+|.+.+. ++-+..++..-..++.. ...|-....+|.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~-~~L~~~L~~~~~yd~~~~~~~~~~~~~~~~av~Ly~ 93 (144)
T PF00637_consen 15 QAFEKANQPELLIEYLEALIESDPSNNPELHNLLLELYAKYEP-EKLLDFLKTSNNYDVDKALRLCEEHKLYEEAVYLYS 93 (144)
T ss_dssp HHHHHTT-CCCCHHHHHHHH---TT--HHHHHHHHHHHHCTTH-HHHHHHHHHHTTS-HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999789999999999999875267888999999999999747-899999864456998999999885060899999985
Q ss_pred HHCCHHHHHHHHH--------HHHHH--CCCCHHHHHHHHHHHH
Q ss_conf 7268889999999--------99974--8996888999999997
Q T0595 86 AMKDYTKAMDVYQ--------KALDL--DSSCKEAADGYQRCMM 119 (123)
Q Consensus 86 ~~~~~~~A~~~~~--------~al~l--~p~~~~a~~~l~~~~~ 119 (123)
+.|++++|+..+- .+++. ..++++.|..+.....
T Consensus 94 ~~~~~~~al~~~l~~~~~~~~~a~e~~~~~~~~~lw~~l~~~~l 137 (144)
T PF00637_consen 94 KMGDHEEALDLLLHKLKDYKEEAIEYAKKVNDPELWKQLLSACL 137 (144)
T ss_dssp HTT-HHHHHHHHHSTTTTH-HHHCHHHCCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 23556999998980212418999999987187999999999997
No 53
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This family includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3ckm_A.
Probab=56.07 E-value=0.96 Score=19.95 Aligned_cols=95 Identities=23% Similarity=0.090 Sum_probs=67.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHH--HCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHH
Q ss_conf 999999987078889999999885--316653-02334445565332111100001110000---00-000011334689
Q T0595 10 KNKGNECFQKGDYPQAMKHYTEAI--KRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQ---LE-PTFIKGYTRKAA 82 (123)
Q Consensus 10 ~~~g~~~~~~~~~~~Ai~~~~~ai--~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~-p~~~~~~~~lg~ 82 (123)
..-+..+...|+++.|...+++.- .+.|.. ......++.+.+..|+++.|+..+.. +. +. +.....|..++.
T Consensus 28 L~Aa~a~i~eg~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~la~~~~~~~~Al~~L~~-~~~~~l~~~q~~r~~~~~A~ 106 (536)
T PF04348_consen 28 LLAARALIQEGKWAQAQALLNQLDRQQLTPEQQAEYQLLRAELALAQGQPQQALALLNF-QDLWQLPQEQQIRYYQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCHHCCHHHHHHHHHHHHH
T ss_conf 99999999789999999999844355588667999999999999985899999998667-98022799999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 99872688899999999997489
Q T0595 83 ALEAMKDYTKAMDVYQKALDLDS 105 (123)
Q Consensus 83 ~~~~~~~~~~A~~~~~~al~l~p 105 (123)
++...|++-+|...+-..-.+-+
T Consensus 107 ~~~~~~~~l~aar~~i~l~~ll~ 129 (536)
T PF04348_consen 107 ALEAQGDPLEAARERIALSPLLT 129 (536)
T ss_dssp -----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99976878999999999744458
No 54
>PF11846 DUF3366: Domain of unknown function (DUF3366)
Probab=50.41 E-value=5.3 Score=16.08 Aligned_cols=50 Identities=22% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 100001110000000000113346899987268889999999999748996
Q T0595 57 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 107 (123)
Q Consensus 57 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 107 (123)
...++-.++.++..| .+..+.+++.++..+|+.++|.....++..+.|..
T Consensus 128 ~~~~~~a~~~l~~~P-~p~~~~~la~~~~~~G~~~~A~~~~~~~~~lyp~~ 177 (192)
T PF11846_consen 128 AAYIEWAEQLLKYRP-RPNVYQRLALALALQGDPEEARQWMAQAQYLYPLQ 177 (192)
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
T ss_conf 999999999987199-73999999999998699899999999999868967
No 55
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilized by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit . ; GO: 0008318 protein prenyltransferase activity, 0018346 protein amino acid prenylation; PDB: 3dsv_A 3dss_A 3c72_A 3dsw_A 1dce_A 1ltx_A 3dst_A 3dsx_A 3dsu_A 3dra_A ....
Probab=40.89 E-value=7.6 Score=15.26 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999885316653023344455653
Q T0595 26 MKHYTEAIKRNPKDAKLYSNRAACYT 51 (123)
Q Consensus 26 i~~~~~ai~~~p~~~~~~~~~a~~~~ 51 (123)
+..-.++|..+|.+..+|..|-.+..
T Consensus 3 L~~~~~~i~~~p~nys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTNKAISMDPKNYSAWNYRRWLLE 28 (31)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999878102238999999998
No 56
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.
Probab=37.59 E-value=8.6 Score=14.97 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHH----------------HCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999987078889999999885----------------316653023344455-65332111100001110000
Q T0595 6 ALEEKNKGNECFQKGDYPQAMKHYTEAI----------------KRNPKDAKLYSNRAA-CYTKLLEFQLALKDCEECIQ 68 (123)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai----------------~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~ 68 (123)
+.-+...|..+++.+++.+|..+|=.+- +-.|..++.+..|+. .|+.+++...|...+..-.+
T Consensus 90 p~LH~~ig~~~~~e~~~~~Ae~Hlilg~~~s~~~~~~ll~~w~~~~~~~e~~lf~~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHVIGEKYWEEGEFYEAERHLILGTDPSAFAYVMLLEYWQTKGYPSEADLFIARAVLQYLCLGNLRFANELFDEFTK 169 (260)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999973318999989763178018889999999998078774658999999999973589999999999998
Q ss_pred H----HHH---------HHHHHHHHHHHHH------HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 0----000---------0011334689998------7268889999999999748996888999999997
Q T0595 69 L----EPT---------FIKGYTRKAAALE------AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 119 (123)
Q Consensus 69 ~----~p~---------~~~~~~~lg~~~~------~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 119 (123)
. +|+ ......+....+. ....|..-.+.|+..++.+|...++.+.+++.+-
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~pllNFl~lLl~~~e~~~~~~F~~L~~~Y~~~L~~d~~~~~~l~~Ig~~yF 239 (260)
T PF04190_consen 170 KLSESHPKLENSDIEFPPSYPLLNFLQLLLLTCERKNAPLFRQLKEKYKPSLKRDPSFNKYLDKIGQLYF 239 (260)
T ss_pred HHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 8741285210256788988645999999999997155899999999988876011879999999999981
No 57
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR007155 Members of this entry are short (less than 100 amino acids) proteins found in archaebacteria. The function of these proteins is unknown.; PDB: 2pmr_A 2oo2_A.
Probab=36.02 E-value=9.1 Score=14.83 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 01133468999872688899999999
Q T0595 74 IKGYTRKAAALEAMKDYTKAMDVYQK 99 (123)
Q Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (123)
+..|+.-|.-|...|++..|+.++.=
T Consensus 35 A~~Y~~Da~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 35 ARSYLEDAKYFLEKGDYVNALASFSY 60 (75)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999989999987888999999999
No 58
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1wy6_A.
Probab=30.48 E-value=11 Score=14.33 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 34445565332111100001110000-00000011334689998726888999999999974
Q T0595 43 YSNRAACYTKLLEFQLALKDCEECIQ-LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
|..+|.-++-...-.++++...+-+. -..-.+.....+|.+|.+.|...+|-+.+.+|-+-
T Consensus 88 ~vd~ALd~lv~q~kkd~Le~i~~~l~kn~ei~~~illkia~A~~kiG~~rea~~ll~eAC~k 149 (161)
T PF09205_consen 88 YVDLALDILVQQGKKDQLEKISNELKKNEEISPEILLKIANAYKKIGNRREANELLNEACKK 149 (161)
T ss_dssp HHHHHHHHHHH---HHHHHH---TT-----S-HHHHHHHHHHHHH---HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999998260878999999886437998899999999999852244489999999997
No 59
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p .; PDB: 3esl_A.
Probab=26.94 E-value=13 Score=13.98 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 6530233444556533211110000111000--0000000113346899987268889999999999
Q T0595 37 PKDAKLYSNRAACYTKLLEFQLALKDCEECI--QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 101 (123)
Q Consensus 37 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 101 (123)
|....+|...+.... ++.+.|.-.. .+.-..+..|..-|..+...|++.+|.+.|+..+
T Consensus 66 ~RyLkiWi~y~~~~~------~p~~if~~l~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~iy~~Gi 126 (126)
T PF08311_consen 66 PRYLKIWIKYADYCS------DPRDIFQFLYSNGIGTKLALFYEEWAQYLESKGNYKEADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHHHS------HHHHHHHHHHH------BHHHHHHHHHHHHHTT-HHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 899999999998646------8999999999868047889999999999998488988999987449
No 60
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=26.30 E-value=7.9 Score=15.15 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=9.7
Q ss_pred HHHHHHCCHHHHHHHHHH
Q ss_conf 999872688899999999
Q T0595 82 AALEAMKDYTKAMDVYQK 99 (123)
Q Consensus 82 ~~~~~~~~~~~A~~~~~~ 99 (123)
.+|...|+|++|+++.+.
T Consensus 111 ~~yl~~~~y~~Al~~~~~ 128 (147)
T PF05131_consen 111 RIYLEKGKYDEALQYCRD 128 (147)
T ss_pred HHHHHCCCHHHHHHHCCC
T ss_conf 999974779999987226
No 61
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 .; GO: 0005634 nucleus
Probab=23.42 E-value=16 Score=13.62 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 30233444556533--211110000111000000-----000011334689998726888999999999974
Q T0595 39 DAKLYSNRAACYTK--LLEFQLALKDCEECIQLE-----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 103 (123)
Q Consensus 39 ~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l 103 (123)
.|.++.++|.+... ...-..++..|.++|... ..+...|.-+|--|++.+++.+|+..+-.+-..
T Consensus 276 yPmalg~LgelEe~~~t~~~~~~~~l~~eai~sa~~~Y~n~hvYPy~y~g~y~yr~~~~~eA~~~wa~aa~V 347 (618)
T PF05053_consen 276 YPMALGNLGELEEIDPTPGRPPPEQLFREAISSARTYYRNHHVYPYTYLGGYYYRHRKYREALAAWAEAADV 347 (618)
T ss_pred CCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 750322234365437889998789999999999888733566463010004777531399999999988999
No 62
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism : precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 .; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 2v1s_D 1om2_A 2v1t_A.
Probab=21.23 E-value=8.1 Score=15.10 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=22.5
Q ss_pred HHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 3468999872-688899999999997489968889999999
Q T0595 78 TRKAAALEAM-KDYTKAMDVYQKALDLDSSCKEAADGYQRC 117 (123)
Q Consensus 78 ~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 117 (123)
..+|.-+... |+..+|..+|-+||...|+=.+.+..+.+.
T Consensus 97 V~lGE~L~~~~g~~~eaa~hfynAL~VypqP~~LL~IyQ~T 137 (183)
T PF02064_consen 97 VQLGEQLIQDQGKEIEAALHFYNALKVYPQPTDLLQIYQKT 137 (183)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111
Done!