Query         T0595 HR4403E, , 123 residues
Match_columns 123
No_of_seqs    138 out of 17387
Neff          9.3 
Searched_HMMs 15564
Date          Mon Jul  5 09:08:29 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0595.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0595.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1elwa_ a.118.8.1 (A:) Hop {Hu  99.9 1.5E-23 9.6E-28  140.1  12.2  116    4-119     1-116 (117)
  2 d1a17a_ a.118.8.1 (A:) Protein  99.9   8E-23 5.1E-27  136.3  12.8  115    4-118     8-122 (159)
  3 d2c2la1 a.118.8.1 (A:24-224) S  99.9 1.2E-23 7.4E-28  140.7   7.2  105    5-109     3-107 (201)
  4 d2h6fa1 a.118.6.1 (A:55-369) P  99.9 1.6E-22   1E-26  134.7  11.1  119    1-119    72-191 (315)
  5 d1xnfa_ a.118.8.1 (A:) Lipopro  99.9 4.2E-22 2.7E-26  132.5  12.7  116    2-117    33-148 (259)
  6 d1p5qa1 a.118.8.1 (A:258-427)   99.9 1.2E-21 7.5E-26  130.2  12.9  116    5-120    12-142 (170)
  7 d2fbna1 a.118.8.1 (A:22-174) P  99.9   3E-21   2E-25  128.0  13.1  117    4-120    15-147 (153)
  8 d2h6fa1 a.118.6.1 (A:55-369) P  99.9 1.8E-21 1.2E-25  129.1  11.3  121    1-121    38-159 (315)
  9 d1w3ba_ a.118.8.1 (A:) O-GlcNA  99.9 3.6E-21 2.3E-25  127.6  12.1  123    1-123   266-388 (388)
 10 d1kt1a1 a.118.8.1 (A:254-421)   99.8 9.4E-21 6.1E-25  125.4  12.3  116    4-119    13-143 (168)
 11 d1ihga1 a.118.8.1 (A:197-365)   99.8 9.5E-21 6.1E-25  125.4  11.7  117    4-120    25-157 (169)
 12 d1elra_ a.118.8.1 (A:) Hop {Hu  99.8 7.9E-20 5.1E-24  120.6  12.7  116    4-120     2-124 (128)
 13 d1elra_ a.118.8.1 (A:) Hop {Hu  99.8 1.2E-19 7.8E-24  119.6  12.7  115    4-119     2-123 (128)
 14 d1fcha_ a.118.8.1 (A:) Peroxin  99.8 4.4E-20 2.8E-24  121.9   8.9  110    2-111   166-277 (323)
 15 d1hh8a_ a.118.8.1 (A:) Neutrop  99.8 1.2E-18 7.6E-23  114.4  12.2  109    1-109    31-155 (192)
 16 d1w3ba_ a.118.8.1 (A:) O-GlcNA  99.8 8.2E-19 5.2E-23  115.3  11.3  121    2-122   233-353 (388)
 17 d1hh8a_ a.118.8.1 (A:) Neutrop  99.8 3.2E-18   2E-22  112.2  12.4  100    6-108     5-104 (192)
 18 d1fcha_ a.118.8.1 (A:) Peroxin  99.8 1.8E-18 1.1E-22  113.5   9.0  103    7-109    20-122 (323)
 19 d1nzna_ a.118.8.1 (A:) Mitocho  99.7 7.4E-18 4.8E-22  110.2  11.0  111   10-120     3-118 (122)
 20 d1zu2a1 a.118.8.1 (A:1-145) Mi  99.7 4.3E-18 2.8E-22  111.5   8.9  107   14-120     5-132 (145)
 21 d1hxia_ a.118.8.1 (A:) Peroxin  99.7 4.2E-18 2.7E-22  111.5   8.5   96    6-101    16-111 (112)
 22 d1xnfa_ a.118.8.1 (A:) Lipopro  99.7 3.2E-17 2.1E-21  106.9  11.3  110    1-110    66-245 (259)
 23 d2hr2a1 a.118.8.8 (A:2-157) Hy  99.7 1.6E-17   1E-21  108.5   6.8  106    4-109     5-135 (156)
 24 d1ya0a1 a.118.8.1 (A:1-497) SM  99.7 3.7E-17 2.4E-21  106.6   5.9  118    1-120   115-232 (497)
 25 d1dcea1 a.118.6.1 (A:1-241,A:3  99.6 5.8E-16 3.7E-20  100.3   8.8  120    2-121    59-191 (334)
 26 d1dcea1 a.118.6.1 (A:1-241,A:3  99.6   1E-15 6.7E-20   99.0   9.7  119    2-120   139-322 (334)
 27 d1ihga1 a.118.8.1 (A:197-365)   99.6 7.8E-16   5E-20   99.6   7.5   95    1-95     72-166 (169)
 28 d2c2la1 a.118.8.1 (A:24-224) S  99.6 6.6E-16 4.3E-20  100.0   6.3   98    1-98     33-130 (201)
 29 d1a17a_ a.118.8.1 (A:) Protein  99.6 3.1E-15   2E-19   96.5   8.8   98    1-98     39-138 (159)
 30 d1elwa_ a.118.8.1 (A:) Hop {Hu  99.5 4.4E-15 2.8E-19   95.7   6.8   85    1-85     32-116 (117)
 31 d1dcea1 a.118.6.1 (A:1-241,A:3  99.5 5.7E-14 3.7E-18   89.9  11.8  114    2-115   103-233 (335)
 32 d1kt1a1 a.118.8.1 (A:254-421)   99.5 2.2E-14 1.4E-18   92.1   8.8   92    3-94     61-152 (168)
 33 d1dcea1 a.118.6.1 (A:1-241,A:3  99.5 3.6E-14 2.3E-18   90.9   9.5  120    1-120    58-190 (335)
 34 d1p5qa1 a.118.8.1 (A:258-427)   99.5   2E-14 1.3E-18   92.3   7.0   92    4-95     60-151 (170)
 35 d1zu2a1 a.118.8.1 (A:1-145) Mi  99.5 1.6E-14   1E-18   92.8   6.1   94    1-94     26-140 (145)
 36 d1tjca_ a.118.8.1 (A:) Prolyl   99.5 6.1E-14 3.9E-18   89.7   6.7   83    5-87      4-93  (95)
 37 d2ff4a2 a.118.8.3 (A:105-283)   99.4 5.2E-13 3.3E-17   84.9  11.1  115    3-118     8-151 (179)
 38 d2fbna1 a.118.8.1 (A:22-174) P  99.4   8E-14 5.2E-18   89.1   6.3   86    5-90     66-151 (153)
 39 d1qqea_ a.118.8.1 (A:) Vesicul  99.4 5.8E-13 3.7E-17   84.6   9.3  104    5-108    76-192 (290)
 40 d1hxia_ a.118.8.1 (A:) Peroxin  99.4 5.4E-13 3.4E-17   84.8   7.2   83   40-122    16-98  (112)
 41 d1nzna_ a.118.8.1 (A:) Mitocho  99.4 1.7E-13 1.1E-17   87.4   4.3   88    1-88     28-120 (122)
 42 d1ya0a1 a.118.8.1 (A:1-497) SM  99.4   1E-12 6.4E-17   83.4   8.1  107   13-121    93-199 (497)
 43 d1qqea_ a.118.8.1 (A:) Vesicul  99.3 2.9E-12 1.9E-16   80.9   9.3  118    5-122    36-172 (290)
 44 d1elra_ a.118.8.1 (A:) Hop {Hu  99.3 6.1E-13 3.9E-17   84.5   4.8   81   40-120     4-84  (128)
 45 d1tjca_ a.118.8.1 (A:) Prolyl   99.3 5.1E-12 3.3E-16   79.7   8.3   82   39-120     4-92  (95)
 46 d2onda1 a.118.8.7 (A:242-549)   99.2 1.4E-10   9E-15   72.1  12.7  120    2-121    95-216 (308)
 47 d1zbpa1 e.61.1.1 (A:2-265) Hyp  99.2 5.2E-11 3.4E-15   74.4  10.0  111    1-111    25-136 (264)
 48 d1elra_ a.118.8.1 (A:) Hop {Hu  99.2 9.9E-12 6.4E-16   78.1   4.8   72    1-72     33-111 (128)
 49 d1hz4a_ a.118.8.2 (A:) Transcr  99.2   1E-10 6.6E-15   72.8   9.9  101    4-104    10-121 (366)
 50 d1zbpa1 e.61.1.1 (A:2-265) Hyp  99.1 8.8E-12 5.6E-16   78.4   3.2  105   13-117     3-108 (264)
 51 d1zbpa1 e.61.1.1 (A:2-265) Hyp  99.1 2.7E-10 1.7E-14   70.6   9.9  110    1-110    25-135 (264)
 52 d1hz4a_ a.118.8.2 (A:) Transcr  99.1 3.7E-10 2.4E-14   69.9   9.4  104    3-106   210-323 (366)
 53 d2onda1 a.118.8.7 (A:242-549)   99.1 1.6E-09   1E-13   66.5  11.7  115    2-116   129-249 (308)
 54 d2hr2a1 a.118.8.8 (A:2-157) Hy  99.0 3.3E-10 2.1E-14   70.1   5.4   83    4-86     53-146 (156)
 55 d1zbpa1 e.61.1.1 (A:2-265) Hyp  98.9 2.9E-10 1.9E-14   70.5   3.2  105   13-117     3-108 (264)
 56 d1ouva_ a.118.18.1 (A:) Cystei  98.7 8.3E-08 5.3E-12   57.6  10.7  101    5-109     1-109 (265)
 57 d2pqrb1 a.118.8.1 (B:5-128) Mi  98.7 8.5E-08 5.5E-12   57.5   9.7   81   39-119    34-118 (124)
 58 d2ff4a2 a.118.8.3 (A:105-283)   98.5 5.5E-08 3.6E-12   58.5   5.0   67    2-68     63-129 (179)
 59 d2pqrb1 a.118.8.1 (B:5-128) Mi  98.5 9.4E-08   6E-12   57.3   5.4   82    6-87     35-120 (124)
 60 d1ouva_ a.118.18.1 (A:) Cystei  98.3 1.5E-06 9.6E-11   51.0   7.9  108    3-116   139-258 (265)
 61 d1klxa_ a.118.18.1 (A:) Cystei  98.0 1.2E-05 7.8E-10   46.2   8.2   84   17-104    34-125 (133)
 62 d1klxa_ a.118.18.1 (A:) Cystei  97.9   4E-05 2.6E-09   43.5   8.4   84   18-105    35-126 (133)
 63 d1klxa_ a.118.18.1 (A:) Cystei  97.9 4.4E-05 2.9E-09   43.3   8.3   93   19-119     6-102 (133)
 64 d1klxa_ a.118.18.1 (A:) Cystei  97.7 8.9E-05 5.7E-09   41.7   8.3   93   19-119     6-102 (133)
 65 d1qsaa1 a.118.5.1 (A:1-450) 70  95.2   0.051 3.3E-06   27.3   7.4   83   19-102   265-347 (450)
 66 d2cfua2 d.157.1.13 (A:20-524)   92.8    0.15 9.4E-06   24.9   5.8   48   74-121   430-477 (505)
 67 d1wfda_ a.7.14.1 (A:) Hypothet  87.3    0.44 2.8E-05   22.4   4.4   31    5-35     14-44  (93)
 68 d1wfda_ a.7.14.1 (A:) Hypothet  86.9    0.46   3E-05   22.2   4.3   31    5-35     14-44  (93)
 69 d1om2a_ a.23.4.1 (A:) Mitochon  86.4    0.36 2.3E-05   22.8   3.6   35    9-43     23-57  (95)
 70 d2crba1 a.7.16.1 (A:8-90) Nucl  85.6    0.64 4.1E-05   21.5   4.5   25    9-33     11-35  (83)
 71 d1om2a_ a.23.4.1 (A:) Mitochon  85.5    0.43 2.7E-05   22.4   3.6   34   10-43     24-57  (95)
 72 d1qsaa1 a.118.5.1 (A:1-450) 70  81.0     1.5 9.3E-05   19.6   7.3   25   78-102   385-409 (450)
 73 d1b89a_ a.118.1.3 (A:) Clathri  80.8     1.5 9.5E-05   19.6  10.7   37   80-116   105-141 (336)
 74 d1wr0a1 a.7.14.1 (A:5-81) Vacu  79.7    0.67 4.3E-05   21.4   2.7   31    5-35     10-40  (77)
 75 d2crba1 a.7.16.1 (A:8-90) Nucl  75.4     2.2 0.00014   18.7   4.4   26    9-34     11-36  (83)
 76 d1rw6a_ a.47.4.1 (A:) CAPPD, a  41.4     9.8 0.00063   15.3   3.9   15   24-38     98-112 (192)
 77 d2cwya1 a.246.2.1 (A:1-94) Hyp  37.9      11 0.00072   15.0   4.7   60   10-69      5-68  (94)
 78 d2ijqa1 a.246.2.1 (A:14-158) H  36.9      12 0.00074   14.9   6.4   73    7-79     18-99  (145)
 79 d1wy6a1 a.118.20.1 (A:7-167) H  29.5      16   0.001   14.2   4.7   38   67-104   113-150 (161)
 80 d1wy6a1 a.118.20.1 (A:7-167) H  28.0      17  0.0011   14.1   4.7   38   67-104   113-150 (161)
 81 d1rw6a_ a.47.4.1 (A:) CAPPD, a  25.6      19  0.0012   13.8   3.9   14   24-37     98-111 (192)
 82 d3efza1 a.118.7.1 (A:46-268) 1  22.6      21  0.0014   13.5   4.3   46   57-102   124-180 (223)
 83 d2oo2a1 a.8.11.1 (A:1-75) Hypo  22.2      22  0.0014   13.5   4.1   28   73-100    32-59  (75)

No 1  
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90  E-value=1.5e-23  Score=140.08  Aligned_cols=116  Identities=35%  Similarity=0.568  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12899999999998707888999999988531665302334445565332111100001110000000000113346899
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   83 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   83 (123)
                      +.+..++.+|+.++..|+|++|+.+|+++|+.+|+++.+|.++|.|+..+|++++|+.++.++++++|.++.+|+++|.+
T Consensus         1 ~~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_           1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             98999999999999969999999999998861996013430001101100001121001346777402202677889999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             987268889999999999748996888999999997
Q T0595            84 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        84 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      +..+|++++|+.+|+++++++|+++.++..++++..
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             998127999999999999849898999999997838


No 2  
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89  E-value=8e-23  Score=136.26  Aligned_cols=115  Identities=34%  Similarity=0.564  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12899999999998707888999999988531665302334445565332111100001110000000000113346899
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   83 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   83 (123)
                      +.|..+..+|+.++..|+|++|+.+|+++|+++|+++.+|.++|.|++.+|++++|+.+|.++|+++|.++.+|+++|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999999999958999999986602110001133324567888740542128888999998754466877999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             98726888999999999974899688899999999
Q T0595            84 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM  118 (123)
Q Consensus        84 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~  118 (123)
                      +..+|++++|+.+|++++.++|++..+...+.++.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99949999999989999872999799999999999


No 3  
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.89  E-value=1.2e-23  Score=140.67  Aligned_cols=105  Identities=33%  Similarity=0.481  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             28999999999987078889999999885316653023344455653321111000011100000000001133468999
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   84 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   84 (123)
                      .|..+.+.|+.++..|+|++|+..|+++|.++|+++.+|.++|.||+.+|++++|+.+|.++++++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             49999999999998699999999999999859998999981789874100000124788888871887389999999999


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             8726888999999999974899688
Q T0595            85 EAMKDYTKAMDVYQKALDLDSSCKE  109 (123)
Q Consensus        85 ~~~~~~~~A~~~~~~al~l~p~~~~  109 (123)
                      ..+|++++|+..|+++++++|++..
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             9879999999999999874955679


No 4  
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.88  E-value=1.6e-22  Score=134.72  Aligned_cols=119  Identities=11%  Similarity=0.084  Sum_probs=106.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707-88899999998853166530233444556533211110000111000000000011334
Q T0595             1 MNPDLALEEKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   79 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~-~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   79 (123)
                      +||+++.+|..+|.++...+ ++++|+.+|+++|..+|+++.+|.++|.++..+|++++|+..+.++++++|++..+|.+
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~  151 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  151 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             79887699999999999837679999999999998877422689887588885053788998875554321004688998


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             6899987268889999999999748996888999999997
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      +|.++..+|++++|+++|+++++++|++..++..++.++.
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             8778888886678999999999879744999988999998


No 5  
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
Probab=99.88  E-value=4.2e-22  Score=132.49  Aligned_cols=116  Identities=15%  Similarity=0.070  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             71128999999999987078889999999885316653023344455653321111000011100000000001133468
Q T0595             2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   81 (123)
Q Consensus         2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   81 (123)
                      +|+.+..++.+|.+++..|+|++|+..|+++|+++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+|+++|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998799999999999854349998899960042788877788752344689998761111588899


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999872688899999999997489968889999999
Q T0595            82 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC  117 (123)
Q Consensus        82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~  117 (123)
                      .++..+|++++|+..|+++++++|++......+..+
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999987667999999999986530007888999999


No 6  
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87  E-value=1.2e-21  Score=130.17  Aligned_cols=116  Identities=27%  Similarity=0.403  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             28999999999987078889999999885316653---------------023344455653321111000011100000
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL   69 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   69 (123)
                      .+..++.+|+.+|..|+|++|+.+|+++|...|..               ..+|.++|.||+++|++++|+.+++++|.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
T ss_conf             99999999999999699999999999998875101000357776406467999999999988642110110000000100


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             000001133468999872688899999999997489968889999999975
Q T0595            70 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        70 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      +|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+...+..+...
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             223103467779999872229999999999997298989999999999999


No 7  
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=99.86  E-value=3e-21  Score=127.98  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             128999999999987078889999999885316653----------------0233444556533211110000111000
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----------------AKLYSNRAACYTKLLEFQLALKDCEECI   67 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   67 (123)
                      +.+..++..|+.+|+.|+|.+|+..|+++|...|..                ..++.++|.||+++|++++|+.+|+++|
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             99999999999999959999999999987760730011105778876310788999619999998465301110100010


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             00000001133468999872688899999999997489968889999999975
Q T0595            68 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        68 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      +++|.++.+|+++|.++..+|++++|+.+|+++++++|++.++...+..+...
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             00000012467768999996899999999999998298989999999999999


No 8  
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86  E-value=1.8e-21  Score=129.14  Aligned_cols=121  Identities=12%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9711289999999999870788899999998853166530233444556533211-110000111000000000011334
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKGYTR   79 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~   79 (123)
                      ++|+.+.++..+|.++.+++.+++|+..|+++|+++|++..+|.+||.++..+|. +++|+..++++++++|++..+|.+
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             69779999999999999588669999999999987988769999999999983767999999999999887742268988


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             689998726888999999999974899688899999999754
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  121 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q  121 (123)
                      +|.++..+|++++|++.|.++++++|++..++..++.++...
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~  159 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             758888505378899887555432100468899887788888


No 9  
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85  E-value=3.6e-21  Score=127.58  Aligned_cols=123  Identities=17%  Similarity=0.235  Sum_probs=116.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000000113346
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      ++|+.+..+..+|..+...|++++|+..|++++...|.++..+..+|.++..+|++++|+..++++++++|+++.+|+++
T Consensus       266 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T d1w3ba_         266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             49998999999999999748799999999865404873001015799999987899999999999998688989999999


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf             8999872688899999999997489968889999999975429
Q T0595            81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  123 (123)
Q Consensus        81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~n  123 (123)
                      |.++..+|++++|+..|+++++++|++++++..++.++..+.+
T Consensus       346 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             9999985999999999999997099989999999999998589


No 10 
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=99.85  E-value=9.4e-21  Score=125.40  Aligned_cols=116  Identities=27%  Similarity=0.417  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             128999999999987078889999999885316653---------------02334445565332111100001110000
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQ   68 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   68 (123)
                      +.+..++++|+.++..|+|.+|+.+|+++|...|..               ..++.++|.|++.+|++++|+.+++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999999999959999999999999999987500124555310646799998499998776220110002232220


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             000000113346899987268889999999999748996888999999997
Q T0595            69 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        69 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      ++|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+...+..+..
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             131048899988999988278999999999999859898999999999999


No 11 
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.84  E-value=9.5e-21  Score=125.38  Aligned_cols=117  Identities=24%  Similarity=0.410  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12899999999998707888999999988531----------------66530233444556533211110000111000
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKR----------------NPKDAKLYSNRAACYTKLLEFQLALKDCEECI   67 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   67 (123)
                      +.+..+...|+.++..|+|++|+..|+++|+.                +|..+.++.++|.|+.++|++++|+.+|.++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999999999908899999999999874111166665577877190239999989999986402101366655443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             00000001133468999872688899999999997489968889999999975
Q T0595            68 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        68 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      +++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             10002236777699999980479999999999998598999999999999999


No 12 
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82  E-value=7.9e-20  Score=120.58  Aligned_cols=116  Identities=26%  Similarity=0.422  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q ss_conf             12899999999998707888999999988531665302334445565332111100001110000000000-------11
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-------KG   76 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~   76 (123)
                      ..|..++++|+.+++.|+|++|+.+|+++|.++|.++.+|.++|.++..+|+++.|+.++.++++++|.++       .+
T Consensus         2 ~~A~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             67899999989999714788999999864113101345666555432111121223457667766341223455421234


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             33468999872688899999999997489968889999999975
Q T0595            77 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      |+++|.++..+|++++|+..|+++++++|++ +++..+.++...
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~l~~~~k~  124 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAEKI  124 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH
T ss_conf             4446689999732999999999996039989-899999999998


No 13 
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82  E-value=1.2e-19  Score=119.60  Aligned_cols=115  Identities=25%  Similarity=0.429  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q ss_conf             128999999999987078889999999885316653023344455653321111000011100000000001-------1
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK-------G   76 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~   76 (123)
                      ..|..++++|+.++..|+|++|+.+|+++|+++|+++.++.++|.|+.++|++++|+.+|.++|+++|.++.       +
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             88899999999999859999999999999884964589998688999881860778999999998680127889889999


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             3346899987268889999999999748996888999999997
Q T0595            77 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      |.++|.++..++++++|++.|++++..+|+ +++...+..+..
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k  123 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK  123 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
T ss_conf             999999999938899999999999845999-999999999999


No 14 
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81  E-value=4.4e-20  Score=121.91  Aligned_cols=110  Identities=16%  Similarity=0.256  Sum_probs=100.7

Q ss_pred             CCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             711--289999999999870788899999998853166530233444556533211110000111000000000011334
Q T0595             2 NPD--LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   79 (123)
Q Consensus         2 nP~--~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   79 (123)
                      +|+  .+..+..+|..+...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..++++++++|+++.+|++
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             13012221110368888888877550021112222222221110133301221111013788877899884324999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             68999872688899999999997489968889
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAA  111 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  111 (123)
                      +|.++..+|++++|+..|+++++++|++..+.
T Consensus       246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         246 LGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999987899999999999997097570011


No 15 
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78  E-value=1.2e-18  Score=114.41  Aligned_cols=109  Identities=19%  Similarity=0.151  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_conf             9711289999999999870788899999998853166530233444556533211110000111000000000-------
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------   73 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------   73 (123)
                      +.|.++..|+++|.+++..|+|++|+.+|+++|+++|+++.+|.++|.|+.++|++++|+.+|++++...|.+       
T Consensus        31 i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          31 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             48988999999999999858914678789999998552346678899999854249999999999998672673678998


Q ss_pred             ---------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             ---------011334689998726888999999999974899688
Q T0595            74 ---------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE  109 (123)
Q Consensus        74 ---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  109 (123)
                               ...++++|.++..+|++++|++.|.+++.+.|+...
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf             665436305889999999999978999999999999836998040


No 16 
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78  E-value=8.2e-19  Score=115.25  Aligned_cols=121  Identities=20%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             71128999999999987078889999999885316653023344455653321111000011100000000001133468
Q T0595             2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   81 (123)
Q Consensus         2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   81 (123)
                      +|..+..+..+|..+...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+..+++++...|..+..+..+|
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             55479999999999998789999999999999849998999999999999748799999999865404873001015799


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             99987268889999999999748996888999999997542
Q T0595            82 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  122 (123)
Q Consensus        82 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q~  122 (123)
                      .++...|++++|+..|+++++++|++..++..++.++..++
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             99998789999999999999868898999999999999859


No 17 
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77  E-value=3.2e-18  Score=112.18  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999870788899999998853166530233444556533211110000111000000000011334689998
Q T0595             6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   85 (123)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   85 (123)
                      +..+.++|..++..|+|++|+..|+++   .|.++.+|+++|.++..+|++++|+.+|+++|+++|+++.+|+++|.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999877999999999864---89889999999999998589146787899999985523466788999998


Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             72688899999999997489968
Q T0595            86 AMKDYTKAMDVYQKALDLDSSCK  108 (123)
Q Consensus        86 ~~~~~~~A~~~~~~al~l~p~~~  108 (123)
                      .+|++++|+..|++++...|.+.
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCC
T ss_conf             54249999999999998672673


No 18 
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75  E-value=1.8e-18  Score=113.49  Aligned_cols=103  Identities=17%  Similarity=0.266  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998707888999999988531665302334445565332111100001110000000000113346899987
Q T0595             7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   86 (123)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   86 (123)
                      ....++|..++..|+|++|+.+|+++|+.+|+++.+|..+|.++..+|++++|+..+.++++++|.++.+|..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999859999999999999986899899999999999983775889999985100222222222222222222


Q ss_pred             HCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             26888999999999974899688
Q T0595            87 MKDYTKAMDVYQKALDLDSSCKE  109 (123)
Q Consensus        87 ~~~~~~A~~~~~~al~l~p~~~~  109 (123)
                      +|++++|++.+++++.++|+...
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHH
T ss_conf             22112111000267773610678


No 19 
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74  E-value=7.4e-18  Score=110.24  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf             9999999870788899999998853166530233444556533---211110000111000000000--01133468999
Q T0595            10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK---LLEFQLALKDCEECIQLEPTF--IKGYTRKAAAL   84 (123)
Q Consensus        10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~   84 (123)
                      .++.+.++..+++++|.+.|.++|.++|.++.+++++|.|+..   .+++++|+..+++++..+|..  +.+|+++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             77988736999999999999998832999899999999999985126789999999999986069931999999999999


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             872688899999999997489968889999999975
Q T0595            85 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        85 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      ..+|++++|+.+|+++++++|++.++......+...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             997316999999999997690989999999999998


No 20 
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.74  E-value=4.3e-18  Score=111.46  Aligned_cols=107  Identities=18%  Similarity=0.147  Sum_probs=96.5

Q ss_pred             HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998707888999999988531665302334445565332----------111100001110000000000113346899
Q T0595            14 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL----------LEFQLALKDCEECIQLEPTFIKGYTRKAAA   83 (123)
Q Consensus        14 ~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   83 (123)
                      ..+-+.+.|++|+..|+++|+++|++++++.++|.++..+          +.+++|+..++++|+++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             79998736999999999998618831089999999998762133336778878889999999887301205877668999


Q ss_pred             HHHHCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             987268-----------8899999999997489968889999999975
Q T0595            84 LEAMKD-----------YTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        84 ~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      |..+|+           +.+|.++|+++++++|++..++..++.+..+
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             987010113578898867876312110002598889999999999997


No 21 
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=99.73  E-value=4.2e-18  Score=111.51  Aligned_cols=96  Identities=11%  Similarity=0.104  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999870788899999998853166530233444556533211110000111000000000011334689998
Q T0595             6 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   85 (123)
Q Consensus         6 a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   85 (123)
                      ...+..+|..++..|++++|+.+|+++|..+|+++.+|..+|.++..+|++++|+.+++++++++|.++.+|+.+|.++.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             89999999999987605899998861011211110012335456410125877410000011111100000378999999


Q ss_pred             HHCCHHHHHHHHHHHH
Q ss_conf             7268889999999999
Q T0595            86 AMKDYTKAMDVYQKAL  101 (123)
Q Consensus        86 ~~~~~~~A~~~~~~al  101 (123)
                      .+|++++|++.|++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
T ss_conf             9789999999999981


No 22 
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
Probab=99.72  E-value=3.2e-17  Score=106.89  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000---------
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP---------   71 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------   71 (123)
                      ++|+++.+|..+|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++.+|         
T Consensus        66 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             49998899960042788877788752344689998761111588899999987667999999999986530007888999


Q ss_pred             -------------------------------------------------------------HHHHHHHHHHHHHHHHCCH
Q ss_conf             -------------------------------------------------------------0001133468999872688
Q T0595            72 -------------------------------------------------------------TFIKGYTRKAAALEAMKDY   90 (123)
Q Consensus        72 -------------------------------------------------------------~~~~~~~~lg~~~~~~~~~   90 (123)
                                                                                   ....+|+.+|.++..+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf             99998853587899999876403144434557788888877777899999999986640845099999999999987899


Q ss_pred             HHHHHHHHHHHHHCCCCHHH
Q ss_conf             89999999999748996888
Q T0595            91 TKAMDVYQKALDLDSSCKEA  110 (123)
Q Consensus        91 ~~A~~~~~~al~l~p~~~~a  110 (123)
                      ++|+..|++++..+|++-..
T Consensus       226 ~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         226 DSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHHHCCCCCHHH
T ss_conf             99999999999839977999


No 23 
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=99.69  E-value=1.6e-17  Score=108.49  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             HHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHCCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             128999999--9999870788899999998853166530------------23344455653321111000011100000
Q T0595             4 DLALEEKNK--GNECFQKGDYPQAMKHYTEAIKRNPKDA------------KLYSNRAACYTKLLEFQLALKDCEECIQL   69 (123)
Q Consensus         4 ~~a~~~~~~--g~~~~~~~~~~~Ai~~~~~ai~~~p~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~   69 (123)
                      +.+.++..+  |...+..|+|++|+..|+++|++.|+.+            .+|.++|.+|..+|++++|+.++++++.+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             89999999999999998599999999999999868442010200121027999999999999828630015766435530


Q ss_pred             HHH-----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             000-----------0011334689998726888999999999974899688
Q T0595            70 EPT-----------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE  109 (123)
Q Consensus        70 ~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~  109 (123)
                      .|.           ...+++++|.+|..+|++++|+..|++++++.|+...
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             431002455443112787752699999888888889999999986687423


No 24 
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67  E-value=3.7e-17  Score=106.60  Aligned_cols=118  Identities=10%  Similarity=0.029  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000000113346
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      ++|+.+..+..+|..+.+.+++++|+..+.+++..+|.  .++.++|.++..+|++++|+..|.+|++++|+++.+|+++
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ----------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99113999998579987589999999999988278899--9999999999980247899999999998789965999999


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             8999872688899999999997489968889999999975
Q T0595            81 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        81 g~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      |.++...|++.+|+..|.+++..+|.++.++..+.++...
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             9999986999999999999981799978999999999987


No 25 
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.63  E-value=5.8e-16  Score=100.32  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf             7112899999999998707----------88899999998853166530233444556533211--11000011100000
Q T0595             2 NPDLALEEKNKGNECFQKG----------DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--FQLALKDCEECIQL   69 (123)
Q Consensus         2 nP~~a~~~~~~g~~~~~~~----------~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~   69 (123)
                      ||++..+|..++..+...+          ++++|+.+|+++++.+|+++.+|..+|.++..+++  +++|+..+.++++.
T Consensus        59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1          59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             87858999999999999765003477877899999999999986888679898864899884304289999999999855


Q ss_pred             HHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             00000113-34689998726888999999999974899688899999999754
Q T0595            70 EPTFIKGY-TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  121 (123)
Q Consensus        70 ~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q  121 (123)
                      +|.+..+| ...|.++...+++++|+..+++++.++|++..++..++.++..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             92121111057899987445528999999998871898799999999999982


No 26 
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.63  E-value=1e-15  Score=98.99  Aligned_cols=119  Identities=9%  Similarity=-0.020  Sum_probs=87.5

Q ss_pred             CCHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----------------------
Q ss_conf             71128999-999999987078889999999885316653023344455653321111-----------------------
Q T0595             2 NPDLALEE-KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ-----------------------   57 (123)
Q Consensus         2 nP~~a~~~-~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~-----------------------   57 (123)
                      ||+...++ ...|..+...+.+++|+..++++|..+|++..+|.++|.++..+|+++                       
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  218 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  218 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             92121111057899987445528999999998871898799999999999982688989998877677689999999999


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             -----------------------------------------000011100000000001133468999872688899999
Q T0595            58 -----------------------------------------LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV   96 (123)
Q Consensus        58 -----------------------------------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~   96 (123)
                                                               +|+..+.+++..+|.+..+|..+|.++..+|++++|++.
T Consensus       219 ~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~  298 (334)
T d1dcea1         219 FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY  298 (334)
T ss_dssp             HHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             88244148899999887718660567887999999986699999999988762913799999999999878999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999997489968889999999975
Q T0595            97 YQKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        97 ~~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      |++++++||....++..++..+..
T Consensus       299 ~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         299 FSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             999998796639999999999867


No 27 
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.61  E-value=7.8e-16  Score=99.65  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000000113346
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      ++|..+..+.++|.++++.|+|++|+..|+++|+++|+++.+|.++|.++..+|++++|+.+++++++++|.+..++..+
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             19023999998999998640210136665544310002236777699999980479999999999998598999999999


Q ss_pred             HHHHHHHCCHHHHHH
Q ss_conf             899987268889999
Q T0595            81 AAALEAMKDYTKAMD   95 (123)
Q Consensus        81 g~~~~~~~~~~~A~~   95 (123)
                      +.+...+....++.+
T Consensus       152 ~~~~~~l~~~~~~~k  166 (169)
T d1ihga1         152 LKVKQKIKAQKDKEK  166 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999998999998


No 28 
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.60  E-value=6.6e-16  Score=100.01  Aligned_cols=98  Identities=11%  Similarity=0.102  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000000113346
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      +||+++..|.++|.+++..|+|++|+.+|+++|+++|+++.+|.++|.++..+|++++|+.+++++++++|.....+...
T Consensus        33 ~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~  112 (201)
T d2c2la1          33 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD  112 (201)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             59998999981789874100000124788888871887389999999999987999999999999987495567989999


Q ss_pred             HHHHHHHCCHHHHHHHHH
Q ss_conf             899987268889999999
Q T0595            81 AAALEAMKDYTKAMDVYQ   98 (123)
Q Consensus        81 g~~~~~~~~~~~A~~~~~   98 (123)
                      +......++...+.....
T Consensus       113 ~~~~l~~~~~~~~~~~~~  130 (201)
T d2c2la1         113 IPSALRIAKKKRWNSIEE  130 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999988868999999


No 29 
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58  E-value=3.1e-15  Score=96.53  Aligned_cols=98  Identities=24%  Similarity=0.279  Sum_probs=87.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000000113346
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      +||+++..|..+|.+++..|++++|+.+|+++|+++|+++.+|.++|.++..+|++++|+.++++++.++|+++.++..+
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          39 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             00011333245678887405421288889999987544668779999999994999999998999987299979999999


Q ss_pred             HHHHHH--HCCHHHHHHHHH
Q ss_conf             899987--268889999999
Q T0595            81 AAALEA--MKDYTKAMDVYQ   98 (123)
Q Consensus        81 g~~~~~--~~~~~~A~~~~~   98 (123)
                      +.+...  .+.+++|+....
T Consensus       119 ~~~~~~~~~~~~~~a~~~~~  138 (159)
T d1a17a_         119 QECNKIVKQKAFERAIAGDE  138 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCH
T ss_conf             99999999898999975738


No 30 
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55  E-value=4.4e-15  Score=95.73  Aligned_cols=85  Identities=22%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000000000113346
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      +||+++..|..+|.++...|+|++|+..|+++|+++|+++.+|.++|.++..+|++++|+.+++++++++|+++.++..+
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          32 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             CCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             19960134300011011000011210013467774022026778899999981279999999999998498989999999


Q ss_pred             HHHHH
Q ss_conf             89998
Q T0595            81 AAALE   85 (123)
Q Consensus        81 g~~~~   85 (123)
                      +.+..
T Consensus       112 ~~l~~  116 (117)
T d1elwa_         112 QNMEA  116 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             97838


No 31 
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} SCOP: d1ltxa1
Probab=99.54  E-value=5.7e-14  Score=89.87  Aligned_cols=114  Identities=9%  Similarity=0.028  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             71128999999999987078--889999999885316653023344455653321111000011-100000000001133
Q T0595             2 NPDLALEEKNKGNECFQKGD--YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC-EECIQLEPTFIKGYT   78 (123)
Q Consensus         2 nP~~a~~~~~~g~~~~~~~~--~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~   78 (123)
                      ||+....|..+|.+....++  +++++..+++++..+|+|..+|.+|+.+....+.+.+++-++ +++|+.+|.+..+|+
T Consensus       103 ~PK~y~~w~hR~~il~~~~~~~~~~E~~~~~k~l~~d~kN~haW~~R~~vl~~~~~~~e~el~~~~~~I~~d~~N~SAw~  182 (335)
T d1dcea1         103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (335)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             78877899999999987356463479999999997474321466569999998548808899999999855884223789


Q ss_pred             HHHHHHHHHCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             46899987268--------------88999999999974899688899999
Q T0595            79 RKAAALEAMKD--------------YTKAMDVYQKALDLDSSCKEAADGYQ  115 (123)
Q Consensus        79 ~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~~~a~~~l~  115 (123)
                      ++|.+...+++              ++++++++.+++.++|++..+|..+.
T Consensus       183 ~R~~ll~~~~~~~~a~~~~~~~~~~~~~el~~~~~aI~~~P~~~S~W~Y~~  233 (335)
T d1dcea1         183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR  233 (335)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             999999861555322201101389999999999999843877630689999


No 32 
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=99.52  E-value=2.2e-14  Score=92.07  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11289999999999870788899999998853166530233444556533211110000111000000000011334689
Q T0595             3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   82 (123)
Q Consensus         3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   82 (123)
                      |..+..+.++|.+++..|+|++|+.+++++|.++|+++.+|+++|.++..+|++++|+.+|.++++++|++..++..++.
T Consensus        61 ~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          61 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             46799998499998776220110002232220131048899988999988278999999999999859898999999999


Q ss_pred             HHHHHCCHHHHH
Q ss_conf             998726888999
Q T0595            83 ALEAMKDYTKAM   94 (123)
Q Consensus        83 ~~~~~~~~~~A~   94 (123)
                      +...++.+.+..
T Consensus       141 ~~~~~~~~~e~~  152 (168)
T d1kt1a1         141 CQKKAKEHNERD  152 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999998699999


No 33 
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} SCOP: d1ltxa1
Probab=99.52  E-value=3.6e-14  Score=90.92  Aligned_cols=120  Identities=11%  Similarity=0.086  Sum_probs=104.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             971128999999999987078----------8899999998853166530233444556533211--1100001110000
Q T0595             1 MNPDLALEEKNKGNECFQKGD----------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--FQLALKDCEECIQ   68 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~----------~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~   68 (123)
                      +||+...+|+.+..++...+.          +++++.++++++..+|++..+|.+|+.+...+++  ++.++..|.++++
T Consensus        58 ~nP~~yt~Wn~R~~~l~~~~~~~~~~~~~~~l~~el~~~~~~l~~~PK~y~~w~hR~~il~~~~~~~~~~E~~~~~k~l~  137 (335)
T d1dcea1          58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (335)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             58211038999999999742038866899999999999999997578877899999999987356463479999999997


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             00000011334689998726888999999-99997489968889999999975
Q T0595            69 LEPTFIKGYTRKAAALEAMKDYTKAMDVY-QKALDLDSSCKEAADGYQRCMMA  120 (123)
Q Consensus        69 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~-~~al~l~p~~~~a~~~l~~~~~~  120 (123)
                      .||.+..+|..+|.+....+.+.++...| +++++.||.|..||.....++..
T Consensus       138 ~d~kN~haW~~R~~vl~~~~~~~e~el~~~~~~I~~d~~N~SAw~~R~~ll~~  190 (335)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (335)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             47432146656999999854880889999999985588422378999999986


No 34 
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50  E-value=2e-14  Score=92.27  Aligned_cols=92  Identities=16%  Similarity=0.159  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12899999999998707888999999988531665302334445565332111100001110000000000113346899
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   83 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   83 (123)
                      -.+..+.++|.++++.|+|++|+.+++++|.++|+++.+|+++|.|+..+|++++|+.+|+++++++|+++.+...++.+
T Consensus        60 ~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          60 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             67999999999988642110110000000100223103467779999872229999999999997298989999999999


Q ss_pred             HHHHCCHHHHHH
Q ss_conf             987268889999
Q T0595            84 LEAMKDYTKAMD   95 (123)
Q Consensus        84 ~~~~~~~~~A~~   95 (123)
                      ...++...+...
T Consensus       140 ~~~~~~~~~~e~  151 (170)
T d1p5qa1         140 QQRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 35 
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.49  E-value=1.6e-14  Score=92.77  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHHHH----------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----------HHHH
Q ss_conf             9711289999999999870----------788899999998853166530233444556533211-----------1100
Q T0595             1 MNPDLALEEKNKGNECFQK----------GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-----------FQLA   59 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~----------~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~-----------~~~A   59 (123)
                      +||+++..+..+|.++...          +.+++|+..|+++|+++|+++.+|.++|.+|..+|+           +++|
T Consensus        26 ~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A  105 (145)
T d1zu2a1          26 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  105 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             18831089999999998762133336778878889999999887301205877668999987010113578898867876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             00111000000000011334689998726888999
Q T0595            60 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM   94 (123)
Q Consensus        60 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~   94 (123)
                      +..|+++++++|++..++..++.+....+.+.++.
T Consensus       106 ~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1         106 TQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             31211000259888999999999999797899999


No 36 
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.45  E-value=6.1e-14  Score=89.72  Aligned_cols=83  Identities=12%  Similarity=0.114  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             289999999999870788899999998853166530-------2334445565332111100001110000000000113
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-------KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY   77 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   77 (123)
                      .++..+++|..++.+|+|++|+..|++|+++.|.+.       +++.++|.++.++|++++|+..++++|+++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             69999999999999779999999999999988653014764789999872688865773988878877988692979999


Q ss_pred             HHHHHHHHHH
Q ss_conf             3468999872
Q T0595            78 TRKAAALEAM   87 (123)
Q Consensus        78 ~~lg~~~~~~   87 (123)
                      .+++.....+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999986


No 37 
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.45  E-value=5.2e-13  Score=84.85  Aligned_cols=115  Identities=16%  Similarity=0.141  Sum_probs=98.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1128999999999987078889999999885316653----------------------023344455653321111000
Q T0595             3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----------------------AKLYSNRAACYTKLLEFQLAL   60 (123)
Q Consensus         3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~   60 (123)
                      -..-..+...|..+...|++++|+..|++|+.+.+..                      ..++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999999999988799999999999986386131125763189999999999999999999999998879905789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHCCCCHHHHHHHHHHH
Q ss_conf             0111000000000011334689998726888999999999-------974899688899999999
Q T0595            61 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA-------LDLDSSCKEAADGYQRCM  118 (123)
Q Consensus        61 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------l~l~p~~~~a~~~l~~~~  118 (123)
                      .++++++.++|.+..+|..++.++..+|++.+|+..|+++       +.++|. ++....+..++
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il  151 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL  151 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHH
T ss_conf             99999998498519999999999998557999999999999998998489968-99999999998


No 38 
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=99.44  E-value=8e-14  Score=89.10  Aligned_cols=86  Identities=14%  Similarity=0.132  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             28999999999987078889999999885316653023344455653321111000011100000000001133468999
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   84 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   84 (123)
                      .+..+.++|.+++++|+|++|+.+|+++|.++|.++.+|+++|.++..+|++++|+.+|.++++++|++..+...++.+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             88999619999998465301110100010000000124677689999968999999999999982989899999999999


Q ss_pred             HHHCCH
Q ss_conf             872688
Q T0595            85 EAMKDY   90 (123)
Q Consensus        85 ~~~~~~   90 (123)
                      .++++.
T Consensus       146 ~kl~~~  151 (153)
T d2fbna1         146 NKLKEA  151 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999987


No 39 
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.41  E-value=5.8e-13  Score=84.60  Aligned_cols=104  Identities=14%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----
Q ss_conf             28999999999987078889999999885316653------0233444556533-21111000011100000000-----
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTK-LLEFQLALKDCEECIQLEPT-----   72 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~-----   72 (123)
                      .+..+.+.|.++...|++++|+.+|++++.+.+..      ..++..+|.++.. .|++++|+..+++++++.+.     
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~  155 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             99999999999998088588899999766776532532058999999888676478789999889999999987337603


Q ss_pred             -HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             -001133468999872688899999999997489968
Q T0595            73 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK  108 (123)
Q Consensus        73 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~  108 (123)
                       ...++.++|.++..+|+|.+|+..|++++...|.+.
T Consensus       156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             3346889999999981739999999999998681332


No 40 
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=99.38  E-value=5.4e-13  Score=84.78  Aligned_cols=83  Identities=13%  Similarity=-0.007  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             02334445565332111100001110000000000113346899987268889999999999748996888999999997
Q T0595            40 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        40 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      ...++.+|.+++..|++++|+..+++++..+|+++.+|..+|.++..++++++|+.+|+++++++|++.+++..++.++.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             89999999999987605899998861011211110012335456410125877410000011111100000378999999


Q ss_pred             HHC
Q ss_conf             542
Q T0595           120 AQY  122 (123)
Q Consensus       120 ~q~  122 (123)
                      .++
T Consensus        96 ~~g   98 (112)
T d1hxia_          96 NEH   98 (112)
T ss_dssp             HHH
T ss_pred             HCC
T ss_conf             978


No 41 
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37  E-value=1.7e-13  Score=87.42  Aligned_cols=88  Identities=17%  Similarity=0.088  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             971128999999999987---078889999999885316653--023344455653321111000011100000000001
Q T0595             1 MNPDLALEEKNKGNECFQ---KGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   75 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~---~~~~~~Ai~~~~~ai~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   75 (123)
                      ++|+++..+.++|..+..   .+++++|+..|++++..+|.+  +++|+++|.+|..+|++++|+.+++++++++|++..
T Consensus        28 ~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          28 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             29998999999999999851267899999999999860699319999999999999973169999999999976909899


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             1334689998726
Q T0595            76 GYTRKAAALEAMK   88 (123)
Q Consensus        76 ~~~~lg~~~~~~~   88 (123)
                      +...++.+..+++
T Consensus       108 A~~l~~~I~~~~~  120 (122)
T d1nzna_         108 AKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999872


No 42 
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37  E-value=1e-12  Score=83.36  Aligned_cols=107  Identities=10%  Similarity=-0.046  Sum_probs=58.9

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99998707888999999988531665302334445565332111100001110000000000113346899987268889
Q T0595            13 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTK   92 (123)
Q Consensus        13 g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~   92 (123)
                      +......+.|+.|+..|.++++++|++...+.++|.++...|++++|+..+.+++..+|.  .+++++|.++...+++++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHCCCHHH
T ss_conf             999999999999999999987899113999998579987589999999999988278899--999999999998024789


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999974899688899999999754
Q T0595            93 AMDVYQKALDLDSSCKEAADGYQRCMMAQ  121 (123)
Q Consensus        93 A~~~~~~al~l~p~~~~a~~~l~~~~~~q  121 (123)
                      |+.+|++|++++|++..++..++.+...+
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             99999999987899659999999999986


No 43 
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.34  E-value=2.9e-12  Score=80.91  Aligned_cols=118  Identities=15%  Similarity=0.063  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf             28999999999987078889999999885316------6530233444556533211110000111000000000-----
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-----   73 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   73 (123)
                      -+..|...|+.+..+++|++|+.+|.+++.+.      +.-+.+|.++|.||..+|++++|+..+++++++.+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             99999999999998869999999999999999875998899999999999999808858889999976677653253205


Q ss_pred             -HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHC
Q ss_conf             -0113346899987-268889999999999748996------888999999997542
Q T0595            74 -IKGYTRKAAALEA-MKDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQY  122 (123)
Q Consensus        74 -~~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~q~  122 (123)
                       ..++.++|.++.. +|++++|++.|++++++.+..      ..++..++.++..+.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             899999988867647878999988999999998733760333468899999999817


No 44 
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32  E-value=6.1e-13  Score=84.48  Aligned_cols=81  Identities=22%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             02334445565332111100001110000000000113346899987268889999999999748996888999999997
Q T0595            40 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        40 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      +..+..+|.+++..|+|++|+.+|+++|+++|.++.++.++|.+|..+|++++|+.+++++++++|++..++..+++++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             89999999999985999999999999988496458999868899988186077899999999868012788988999999


Q ss_pred             H
Q ss_conf             5
Q T0595           120 A  120 (123)
Q Consensus       120 ~  120 (123)
                      .
T Consensus        84 ~   84 (128)
T d1elra_          84 R   84 (128)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 45 
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.30  E-value=5.1e-12  Score=79.66  Aligned_cols=82  Identities=13%  Similarity=0.006  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             30233444556533211110000111000000000-------01133468999872688899999999997489968889
Q T0595            39 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA  111 (123)
Q Consensus        39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  111 (123)
                      +++-++.+|.+++++|+|++|+..+++|+++.|.+       +.++.++|.++..+|++++|+..|+++++++|+++.+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             69999999999999779999999999999988653014764789999872688865773988878877988692979999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999975
Q T0595           112 DGYQRCMMA  120 (123)
Q Consensus       112 ~~l~~~~~~  120 (123)
                      ..++.....
T Consensus        84 ~Nl~~~~~~   92 (95)
T d1tjca_          84 GNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999998


No 46 
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.23  E-value=1.4e-10  Score=72.11  Aligned_cols=120  Identities=12%  Similarity=0.004  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7112899999999998707888999999988531665302-334445565332111100001110000000000113346
Q T0595             2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      +|.....|...+.....+|++++|...|+++|...|.+.. +|...+......|+++.|...+.++++..|.....|...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99879999999999986133899999999999871578699999999999982786889999999998088867999999


Q ss_pred             HHHHH-HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             89998-726888999999999974899688899999999754
Q T0595            81 AAALE-AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  121 (123)
Q Consensus        81 g~~~~-~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q  121 (123)
                      |.... ..|+.+.|...|++++...|++..++..+.+.+..+
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999987655778999999999986100388999999999986


No 47 
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=99.22  E-value=5.2e-11  Score=74.36  Aligned_cols=111  Identities=13%  Similarity=-0.031  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302334445565332111100001110000-00000011334
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPTFIKGYTR   79 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~   79 (123)
                      .+|+++..+..+|..+...|++++|+..|+++++++|++...+..++.++...+..+++.....+... .+|.....+..
T Consensus        25 ~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~  104 (264)
T d1zbpa1          25 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV  104 (264)
T ss_dssp             TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             78999999999999999879999999999999986997389999999999834663789987544420358647999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             68999872688899999999997489968889
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAA  111 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  111 (123)
                      .+.++...|++++|...+.++.++.|.....+
T Consensus       105 ~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1         105 SFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999967998999999999983399998100


No 48 
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.18  E-value=9.9e-12  Score=78.13  Aligned_cols=72  Identities=19%  Similarity=0.291  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97112899999999998707888999999988531665302-------3344455653321111000011100000000
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-------LYSNRAACYTKLLEFQLALKDCEECIQLEPT   72 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   72 (123)
                      ++|+++..+..+|..++..+++++|+..|+++|+++|++..       +|.++|.++..+|++++|+.++.++++++|+
T Consensus        33 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  111 (128)
T d1elra_          33 LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             3101345666555432111121223457667766341223455421234444668999973299999999999603998


No 49 
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=99.18  E-value=1e-10  Score=72.83  Aligned_cols=101  Identities=15%  Similarity=0.023  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf             1289999999999870788899999998853166530-----233444556533211110000111000000000-----
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-----KLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-----   73 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   73 (123)
                      ..++...-+|.+++..|++++|+..|++++...|.+.     .++..+|.++..+|++++|+..+.+++++.|..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             13999999999999888999999999999854868996799999999999999879999999999999999875011489


Q ss_pred             -HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             -0113346899987268889999999999748
Q T0595            74 -IKGYTRKAAALEAMKDYTKAMDVYQKALDLD  104 (123)
Q Consensus        74 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~  104 (123)
                       ..++..++.++...|++..|...+.+++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999888788788888999998899999986


No 50 
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=99.14  E-value=8.8e-12  Score=78.41  Aligned_cols=105  Identities=21%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99998707888999999988531665302334445565332111100001110000000000113346899987268889
Q T0595            13 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTK   92 (123)
Q Consensus        13 g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~   92 (123)
                      +..++..|++++|+..|+++|+.+|+++..+..+|.++...|++++|+..++++++++|.+..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf             89998888999999999999997899999999999999987999999999999998699738999999999983466378


Q ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHHH
Q ss_conf             99999999974-89968889999999
Q T0595            93 AMDVYQKALDL-DSSCKEAADGYQRC  117 (123)
Q Consensus        93 A~~~~~~al~l-~p~~~~a~~~l~~~  117 (123)
                      +...+.+...+ +|...........+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~  108 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNL  108 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99875444203586479999999999


No 51 
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=99.12  E-value=2.7e-10  Score=70.62  Aligned_cols=110  Identities=13%  Similarity=-0.013  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             971128999999999987078889999999885316653023344455653321111000011100000-0000011334
Q T0595             1 MNPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTR   79 (123)
Q Consensus         1 lnP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~   79 (123)
                      .+|+++..+..+|..+...|++++|+..|+.+++++|++...+...+......+...++.......... +|..+..+..
T Consensus        25 ~~P~d~~ar~~La~ll~~~G~~~~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~r~~~~a~~~~a~~l~~p~~~~~ll~  104 (264)
T d1zbpa1          25 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV  104 (264)
T ss_dssp             TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             58999889999999999818988999999999970886378999999999873218999999776751278747899999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             6899987268889999999999748996888
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEA  110 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a  110 (123)
                      .+.+....|++++|...+.+++++.|..+..
T Consensus       105 ~A~~~~~~Gd~~eA~~~~~~A~~l~P~~~~~  135 (264)
T d1zbpa1         105 SFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             9999987389889999999999718888602


No 52 
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=99.09  E-value=3.7e-10  Score=69.92  Aligned_cols=104  Identities=18%  Similarity=0.039  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Q ss_conf             11289999999999870788899999998853166530----2334445565332111100001110000------0000
Q T0595             3 PDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKLLEFQLALKDCEECIQ------LEPT   72 (123)
Q Consensus         3 P~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~   72 (123)
                      |..+..+...|..+...+++++|+..+.+++...|.+.    ..+.++|.++..+|++++|+..+++++.      ..|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             26999999999999860448989999999997622466677788999999998758799999999999988764266747


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf             0011334689998726888999999999974899
Q T0595            73 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS  106 (123)
Q Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~  106 (123)
                      .+.++..+|.++..+|++++|++.|++++++.+.
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999878999999999999997653


No 53 
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.06  E-value=1.6e-09  Score=66.55  Aligned_cols=115  Identities=10%  Similarity=-0.055  Sum_probs=95.3

Q ss_pred             CCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7112-8999999999987078889999999885316653023344455653-3211110000111000000000011334
Q T0595             2 NPDL-ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTR   79 (123)
Q Consensus         2 nP~~-a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~   79 (123)
                      +|.. ...|...+....+.+++++|...|.++++..|.+...|...+.... ..|+.+.|...++++++..|.++..|..
T Consensus       129 ~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~  208 (308)
T d2onda1         129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA  208 (308)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15786999999999999827868899999999980888679999999999876557789999999999861003889999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHH
Q ss_conf             68999872688899999999997489968----88999999
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCK----EAADGYQR  116 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~~~l~~  116 (123)
                      .+......|+++.|...|++++...|.++    .++..+.+
T Consensus       209 y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~  249 (308)
T d2onda1         209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  249 (308)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999986986899999999998278986899999999999


No 54 
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=98.97  E-value=3.3e-10  Score=70.14  Aligned_cols=83  Identities=11%  Similarity=0.015  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             128999999999987078889999999885316653-----------023344455653321111000011100000000
Q T0595             4 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   72 (123)
Q Consensus         4 ~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   72 (123)
                      ..+..|.++|.++...|+|++|+..++++|++.|..           ..+++++|.++..+|++++|+.+|++++++.|.
T Consensus        53 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          53 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             27999999999999828630015766435530431002455443112787752699999888888889999999986687


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             00113346899987
Q T0595            73 FIKGYTRKAAALEA   86 (123)
Q Consensus        73 ~~~~~~~lg~~~~~   86 (123)
                      .....-........
T Consensus       133 ~~~~~~~~~~~~~~  146 (156)
T d2hr2a1         133 RKGETPGKERMMEV  146 (156)
T ss_dssp             CCSCCTTHHHHHHH
T ss_pred             HHCHHHHHHHHHHH
T ss_conf             42307999999999


No 55 
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=98.91  E-value=2.9e-10  Score=70.46  Aligned_cols=105  Identities=21%  Similarity=0.166  Sum_probs=82.9

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99998707888999999988531665302334445565332111100001110000000000113346899987268889
Q T0595            13 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTK   92 (123)
Q Consensus        13 g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~   92 (123)
                      +..++..|++++|+..++++|+.+|.++.++..++.++...|++++|+..++++++++|.+..++..++.+....+...+
T Consensus         3 ~qdaL~~G~~~~Al~~l~~al~~~P~d~~ar~~La~ll~~~G~~~~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~r~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             47888738988999999999985899988999999999981898899999999997088637899999999987321899


Q ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHHH
Q ss_conf             99999999974-89968889999999
Q T0595            93 AMDVYQKALDL-DSSCKEAADGYQRC  117 (123)
Q Consensus        93 A~~~~~~al~l-~p~~~~a~~~l~~~  117 (123)
                      +.........+ +|.........+.+
T Consensus        83 ~~a~~~~a~~l~~p~~~~~ll~~A~~  108 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNL  108 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99997767512787478999999999


No 56 
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
Probab=98.73  E-value=8.3e-08  Score=57.60  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             289999999999870788899999998853166530233444556533----2111100001110000000000113346
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRK   80 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l   80 (123)
                      ++.+++.+|..++.++||++|+.+|+++.+.  +++.++.++|.+|..    ..++..|...+..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--CCCCHHHCC
T ss_conf             9899999999999877999999999999978--999999999999980999605699998750122211--111123135


Q ss_pred             HHHHHH----HCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             899987----26888999999999974899688
Q T0595            81 AAALEA----MKDYTKAMDVYQKALDLDSSCKE  109 (123)
Q Consensus        81 g~~~~~----~~~~~~A~~~~~~al~l~p~~~~  109 (123)
                      |.++..    ..+...|...++++.+..+....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~  109 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC  109 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             012243211212367798887655432146688


No 57 
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.68  E-value=8.5e-08  Score=57.53  Aligned_cols=81  Identities=10%  Similarity=-0.039  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             30233444556533---2111100001110000000000-1133468999872688899999999997489968889999
Q T0595            39 DAKLYSNRAACYTK---LLEFQLALKDCEECIQLEPTFI-KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY  114 (123)
Q Consensus        39 ~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  114 (123)
                      .+...++.|.|+.+   ..+.+++|..++.++..+|... +.++.+|.+|+.+|+|++|..+++++|+++|++.++....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             81019999999982796889999999999998549505999999999999987329999999999982399849999999


Q ss_pred             HHHHH
Q ss_conf             99997
Q T0595           115 QRCMM  119 (123)
Q Consensus       115 ~~~~~  119 (123)
                      ..+..
T Consensus       114 ~~Ie~  118 (124)
T d2pqrb1         114 SMVED  118 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999


No 58 
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.52  E-value=5.5e-08  Score=58.51  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7112899999999998707888999999988531665302334445565332111100001110000
Q T0595             2 NPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ   68 (123)
Q Consensus         2 nP~~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   68 (123)
                      .|.....+..+|..+...|++++|+.+++++|..+|.+..+|..++.++..+|++.+|+..|+++..
T Consensus        63 ~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          63 VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9999999999999998879905789999999984985199999999999985579999999999999


No 59 
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.48  E-value=9.4e-08  Score=57.31  Aligned_cols=82  Identities=13%  Similarity=0.023  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999870---788899999998853166530-23344455653321111000011100000000001133468
Q T0595             6 ALEEKNKGNECFQK---GDYPQAMKHYTEAIKRNPKDA-KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   81 (123)
Q Consensus         6 a~~~~~~g~~~~~~---~~~~~Ai~~~~~ai~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   81 (123)
                      +...++.|..+.+-   .+.++||..|+++++.+|... ++++++|..|.++|+|++|...++++++++|++..+...+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             10199999999827968899999999999985495059999999999999873299999999999823998499999999


Q ss_pred             HHHHHH
Q ss_conf             999872
Q T0595            82 AALEAM   87 (123)
Q Consensus        82 ~~~~~~   87 (123)
                      .+..++
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999987


No 60 
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
Probab=98.30  E-value=1.5e-06  Score=51.00  Aligned_cols=108  Identities=20%  Similarity=0.165  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1128999999999987----0788899999998853166530233444556533----2111100001110000000000
Q T0595             3 PDLALEEKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFI   74 (123)
Q Consensus         3 P~~a~~~~~~g~~~~~----~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~   74 (123)
                      +.....+..+|..+..    ..+...+...++.+.+  +.++.+++++|.++..    ..++++|+..|.++.+..  ++
T Consensus       139 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~  214 (265)
T d1ouva_         139 LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NG  214 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CH
T ss_conf             111010445555640688743342200012211323--22223322113121267654310344454676653036--89


Q ss_pred             HHHHHHHHHHHH----HCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             113346899987----268889999999999748996888999999
Q T0595            75 KGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQR  116 (123)
Q Consensus        75 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~l~~  116 (123)
                      .+.+++|.+|..    ..++.+|++.|+++.+..+  ..+...+.+
T Consensus       215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~--~~A~~~l~~  258 (265)
T d1ouva_         215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA--KGACDILKQ  258 (265)
T ss_dssp             HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC--HHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_conf             99999999998399976189999999999998769--999999999


No 61 
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=98.05  E-value=1.2e-05  Score=46.24  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=62.4

Q ss_pred             HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC
Q ss_conf             870788899999998853166530233444556533----2111100001110000000000113346899987----26
Q T0595            17 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MK   88 (123)
Q Consensus        17 ~~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~   88 (123)
                      ....++++|+..|+++.+..  ++.+++.+|.+|..    ..++.+|+..|+++.+  ..++.+.+.+|.+|..    ..
T Consensus        34 ~~~~~~~~a~~~~~~a~~~g--~~~A~~~lg~~y~~G~~v~~d~~~A~~~~~~aa~--~g~~~a~~~lg~~y~~G~gv~~  109 (133)
T d1klxa_          34 NSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG--LNDQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             CTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCCCCC
T ss_conf             66114799999986541021--0577899988875177655566899999887411--2356899999999881899731


Q ss_pred             CHHHHHHHHHHHHHHC
Q ss_conf             8889999999999748
Q T0595            89 DYTKAMDVYQKALDLD  104 (123)
Q Consensus        89 ~~~~A~~~~~~al~l~  104 (123)
                      ++++|++.|+++.+..
T Consensus       110 d~~~A~~~~~~Aa~~g  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
T ss_conf             6699999999998758


No 62 
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=97.88  E-value=4e-05  Score=43.55  Aligned_cols=84  Identities=14%  Similarity=0.092  Sum_probs=56.6

Q ss_pred             HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCC
Q ss_conf             70788899999998853166530233444556533----2111100001110000000000113346899987----268
Q T0595            18 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKD   89 (123)
Q Consensus        18 ~~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~   89 (123)
                      ...++++|+..|+++.+.  .++.+.+.+|.+|..    ..++++|+..++++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCC
T ss_conf             123899999987654113--312555567875330135310357888887500025--7406778999999829846778


Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             8899999999997489
Q T0595            90 YTKAMDVYQKALDLDS  105 (123)
Q Consensus        90 ~~~A~~~~~~al~l~p  105 (123)
                      +.+|++.|+++.++..
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999998788


No 63 
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=97.86  E-value=4.4e-05  Score=43.29  Aligned_cols=93  Identities=19%  Similarity=0.106  Sum_probs=72.8

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHH
Q ss_conf             07888999999988531665302334445565332111100001110000000000113346899987----26888999
Q T0595            19 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAM   94 (123)
Q Consensus        19 ~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~   94 (123)
                      .+++++|+..|.++.+..  ++.+..+++  .....++++|+..++++.+..  ++.+.+.+|.+|..    ..++.+|+
T Consensus         6 ~~d~~~A~~~~~~aa~~g--~~~a~~~l~--~~~~~~~~~a~~~~~~a~~~g--~~~A~~~lg~~y~~G~~v~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLV--SNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHH--CCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             216699999999998548--988886641--266114799999986541021--05778999888751776555668999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9999999748996888999999997
Q T0595            95 DVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        95 ~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      +.|+++.+.  .++.+...++.++.
T Consensus        80 ~~~~~aa~~--g~~~a~~~lg~~y~  102 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHCC--CCHHHHHHHHHHHH
T ss_conf             998874112--35689999999988


No 64 
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=97.74  E-value=8.9e-05  Score=41.70  Aligned_cols=93  Identities=19%  Similarity=0.116  Sum_probs=73.1

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHH
Q ss_conf             07888999999988531665302334445565332111100001110000000000113346899987----26888999
Q T0595            19 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAM   94 (123)
Q Consensus        19 ~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~   94 (123)
                      .+|+++|+.+|.++.+.+  ++.+..+++.  ....++++|+..++++.+.  .++.+.+.+|.+|..    ..++.+|+
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHCC--CCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             569999999999999879--9154565410--1123899999987654113--312555567875330135310357888


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9999999748996888999999997
Q T0595            95 DVYQKALDLDSSCKEAADGYQRCMM  119 (123)
Q Consensus        95 ~~~~~al~l~p~~~~a~~~l~~~~~  119 (123)
                      +.|+++.+.  .++.+...++.++.
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHCC--CCCHHHHHHHHHHH
T ss_conf             887500025--74067789999998


No 65 
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=95.16  E-value=0.051  Score=27.25  Aligned_cols=83  Identities=8%  Similarity=-0.119  Sum_probs=40.9

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             07888999999988531665302334445565332111100001110000000000113346899987268889999999
Q T0595            19 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ   98 (123)
Q Consensus        19 ~~~~~~Ai~~~~~ai~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   98 (123)
                      .+..+.+...++..+....+........+. .+..|++..++..+.+.-.-.+..+...|=+|.++..+|+.++|...|+
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~a~~~~~~l~~~~~~~~r~~YW~gra~~~~G~~~~A~~~~~  343 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH  343 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             279089999998511567884789999999-9871496899999984160101246899999999987289678999999


Q ss_pred             HHHH
Q ss_conf             9997
Q T0595            99 KALD  102 (123)
Q Consensus        99 ~al~  102 (123)
                      .+..
T Consensus       344 ~~a~  347 (450)
T d1qsaa1         344 QLMQ  347 (450)
T ss_dssp             HHHT
T ss_pred             HHCC
T ss_conf             8502


No 66 
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=92.78  E-value=0.15  Score=24.86  Aligned_cols=48  Identities=13%  Similarity=0.091  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             011334689998726888999999999974899688899999999754
Q T0595            74 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  121 (123)
Q Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~q  121 (123)
                      .+....++...+..|+|..|.+....++..+|++.++....+.++...
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l  477 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL  477 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999999887898999999999962999999999999999999


No 67 
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=87.32  E-value=0.44  Score=22.36  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf             2899999999998707888999999988531
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR   35 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~   35 (123)
                      .|..+..+|..+-..|+|++|+.+|.++|+.
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999999999809999999999999999


No 68 
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} SCOP: d1yxra1 d1wr0a1 d1weva_ d1v2ya_
Probab=86.86  E-value=0.46  Score=22.23  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf             2899999999998707888999999988531
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR   35 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~   35 (123)
                      .|..+..++..+-..++|++|+.+|.+||++
T Consensus        14 ~A~~lvk~Av~~D~~~~y~eA~~~Y~~Ai~~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999999999878713789999999999999


No 69 
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=86.37  E-value=0.36  Score=22.79  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             99999999870788899999998853166530233
Q T0595             9 EKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY   43 (123)
Q Consensus         9 ~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~   43 (123)
                      -+.+|..+...|++++|+.+|..||.++|.-...+
T Consensus        23 eV~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~LL   57 (95)
T d1om2a_          23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL   57 (95)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999999867988899999999999827899999


No 70 
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2,  NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=85.64  E-value=0.64  Score=21.50  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9999999987078889999999885
Q T0595             9 EKNKGNECFQKGDYPQAMKHYTEAI   33 (123)
Q Consensus         9 ~~~~g~~~~~~~~~~~Ai~~~~~ai   33 (123)
                      +-.++..+...|.|++||+|..+|.
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             8888999998577899999999999


No 71 
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=85.50  E-value=0.43  Score=22.43  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9999999870788899999998853166530233
Q T0595            10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY   43 (123)
Q Consensus        10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~~~~   43 (123)
                      +.+|..+...|++.+|..+|.+||.+.|.-.+.+
T Consensus        24 V~~GE~Lla~g~~~e~a~hf~~Al~VypqP~~LL   57 (95)
T d1om2a_          24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL   57 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9999897238984689999867865288878999


No 72 
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=80.99  E-value=1.5  Score=19.64  Aligned_cols=25  Identities=8%  Similarity=-0.004  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             3468999872688899999999997
Q T0595            78 TRKAAALEAMKDYTKAMDVYQKALD  102 (123)
Q Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~al~  102 (123)
                      +.++..++.+|+...|...+..++.
T Consensus       385 ~~ra~~L~~~g~~~~A~~e~~~l~~  409 (450)
T d1qsaa1         385 MARVRELMYWNLDNTARSEWANLVK  409 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             8999999986994699999999986


No 73 
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=80.81  E-value=1.5  Score=19.61  Aligned_cols=37  Identities=8%  Similarity=0.047  Sum_probs=20.3

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             6899987268889999999999748996888999999
Q T0595            80 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR  116 (123)
Q Consensus        80 lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~  116 (123)
                      .-..|...|.+++.+..+..++..++.+......+..
T Consensus       105 ~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~  141 (336)
T d1b89a_         105 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI  141 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             9999987698599999999997577444679999999


No 74 
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.66  E-value=0.67  Score=21.40  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf             2899999999998707888999999988531
Q T0595             5 LALEEKNKGNECFQKGDYPQAMKHYTEAIKR   35 (123)
Q Consensus         5 ~a~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~   35 (123)
                      .|..+..+|..+=..|+|++|+.+|.+||+.
T Consensus        10 ~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1          10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999999988849999999999999999


No 75 
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=75.44  E-value=2.2  Score=18.73  Aligned_cols=26  Identities=15%  Similarity=0.364  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99999999870788899999998853
Q T0595             9 EKNKGNECFQKGDYPQAMKHYTEAIK   34 (123)
Q Consensus         9 ~~~~g~~~~~~~~~~~Ai~~~~~ai~   34 (123)
                      .-.++..+...|.|++||.|..+|-.
T Consensus        11 ~~RkAe~~~~~gkfeeAI~CHrkAa~   36 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             44899999862670899999899999


No 76 
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.41  E-value=9.8  Score=15.30  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999988531665
Q T0595            24 QAMKHYTEAIKRNPK   38 (123)
Q Consensus        24 ~Ai~~~~~ai~~~p~   38 (123)
                      .|+.+|..++...|-
T Consensus        98 ~a~~~y~~al~~~pp  112 (192)
T d1rw6a_          98 LALENYITALQAVPP  112 (192)
T ss_dssp             HHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999845899


No 77 
>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus thermophilus [TaxId: 274]}
Probab=37.88  E-value=11  Score=15.00  Aligned_cols=60  Identities=10%  Similarity=0.006  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999870788899999998853166530-233---44455653321111000011100000
Q T0595            10 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-KLY---SNRAACYTKLLEFQLALKDCEECIQL   69 (123)
Q Consensus        10 ~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~~~-~~~---~~~a~~~~~~~~~~~A~~~~~~al~~   69 (123)
                      ...|..+|..|+|=+|-+.++..-...|... .++   ...+..+.+..+-..|...+.+++..
T Consensus         5 ~~~gi~lfn~g~y~eaHE~lE~~W~~~~~~er~~~qgLIQ~Ava~~h~~~~~ga~~ll~ka~~~   68 (94)
T d2cwya1           5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRPGLRNLRKAEAR   68 (94)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9999999858987987999999985489804999999999999999997477999999999999


No 78 
>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}
Probab=36.93  E-value=12  Score=14.91  Aligned_cols=73  Identities=11%  Similarity=0.127  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-C--HHHHH---HHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998707888999999988531665-3--02334---44556-5--332111100001110000000000113
Q T0595             7 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK-D--AKLYS---NRAAC-Y--TKLLEFQLALKDCEECIQLEPTFIKGY   77 (123)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~Ai~~~~~ai~~~p~-~--~~~~~---~~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~   77 (123)
                      ......|..+|..|+|=+|-+.++..-...+. +  ..++.   .++.. +  .+.|+...|...+.+++..-...+..+
T Consensus        18 ~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~~~~   97 (145)
T d2ijqa1          18 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDY   97 (145)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999998089889989999999986789873789999999999999999980788999999999999998289724


Q ss_pred             HH
Q ss_conf             34
Q T0595            78 TR   79 (123)
Q Consensus        78 ~~   79 (123)
                      ..
T Consensus        98 ~G   99 (145)
T d2ijqa1          98 YG   99 (145)
T ss_dssp             GG
T ss_pred             CC
T ss_conf             78


No 79 
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=29.48  E-value=16  Score=14.23  Aligned_cols=38  Identities=16%  Similarity=0.041  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             00000000113346899987268889999999999748
Q T0595            67 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD  104 (123)
Q Consensus        67 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~  104 (123)
                      ++-..-.+.....+|.+|.++|...+|-+.+.+|-+-.
T Consensus       113 ~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1         113 LKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             75379987999999999988522444899999999975


No 80 
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=28.02  E-value=17  Score=14.09  Aligned_cols=38  Identities=16%  Similarity=0.041  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             00000000113346899987268889999999999748
Q T0595            67 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD  104 (123)
Q Consensus        67 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~  104 (123)
                      ++...-.+.....+|.+|.+.|...+|-+.+.+|-+-.
T Consensus       113 ~k~~ei~~~~llkia~A~~kig~~rea~~ll~eAC~kG  150 (161)
T d1wy6a1         113 LKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             85047869999999998886336015889999998756


No 81 
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1tkna_
Probab=25.60  E-value=19  Score=13.85  Aligned_cols=14  Identities=29%  Similarity=0.586  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999998853166
Q T0595            24 QAMKHYTEAIKRNP   37 (123)
Q Consensus        24 ~Ai~~~~~ai~~~p   37 (123)
                      .|+.+|..++..+|
T Consensus        98 ~al~~y~~al~~~p  111 (192)
T d1rw6a_          98 LALENYITALQAVP  111 (192)
T ss_dssp             HHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999871699


No 82 
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}
Probab=22.56  E-value=21  Score=13.52  Aligned_cols=46  Identities=15%  Similarity=0.071  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHH-HHCCHHHHHHHHHHHHH
Q ss_conf             1000011100000-------000001---1334689998-72688899999999997
Q T0595            57 QLALKDCEECIQL-------EPTFIK---GYTRKAAALE-AMKDYTKAMDVYQKALD  102 (123)
Q Consensus        57 ~~A~~~~~~al~~-------~p~~~~---~~~~lg~~~~-~~~~~~~A~~~~~~al~  102 (123)
                      +.|...|++|+++       .|++|.   .-++.++.++ .+++.++|++.-+++.+
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999999999998632347668999999998999999980799999999999999


No 83 
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.18  E-value=22  Score=13.48  Aligned_cols=28  Identities=18%  Similarity=0.187  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             0011334689998726888999999999
Q T0595            73 FIKGYTRKAAALEAMKDYTKAMDVYQKA  100 (123)
Q Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a  100 (123)
                      .+..|+.-|.-|...|++..|+.++.=+
T Consensus        32 ma~~Y~~Da~~fl~~gD~v~A~~~~~Ya   59 (75)
T d2oo2a1          32 NIEAYISDSRYFLEKGDLVRAFECVVWA   59 (75)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999899998878799999999999


Done!