Query T0596 3NI7, Nitrosomonas europaea ATCC 19718, 213 residues Match_columns 213 No_of_seqs 102 out of 12091 Neff 10.0 Searched_HMMs 22458 Date Mon Jul 5 09:12:57 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0596.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0596.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3c07_A Putative TETR-family tr 99.9 9.9E-19 4.4E-23 164.2 23.1 182 3-184 37-223 (273) 2 2qib_A TETR-family transcripti 99.8 9.8E-18 4.4E-22 156.4 24.2 180 3-184 9-188 (231) 3 3f1b_A TETR-like transcription 99.8 5.2E-17 2.3E-21 150.8 23.4 136 3-138 10-146 (203) 4 3lwj_A Putative TETR-family tr 99.8 9.7E-17 4.3E-21 148.7 23.4 182 1-183 6-191 (202) 5 2f07_A YVDT; helix-turn-helix, 99.8 1.7E-16 7.4E-21 146.8 22.9 165 1-165 4-171 (197) 6 3him_A Probable transcriptiona 99.8 3.2E-17 1.4E-21 152.4 19.0 171 3-174 12-187 (211) 7 3iuv_A Uncharacterized TETR fa 99.8 1.1E-17 5E-22 156.0 16.7 175 4-184 7-181 (201) 8 3dcf_A Transcriptional regulat 99.8 4.7E-17 2.1E-21 151.1 19.5 170 2-171 26-199 (218) 9 3lhq_A Acrab operon repressor 99.8 4.9E-16 2.2E-20 143.2 24.5 181 4-184 11-204 (220) 10 2oer_A Probable transcriptiona 99.8 1.4E-16 6E-21 147.5 21.0 179 3-182 20-199 (214) 11 3crj_A Transcription regulator 99.8 2.4E-16 1.1E-20 145.6 21.9 180 3-185 10-197 (199) 12 2np5_A Transcriptional regulat 99.8 4.5E-17 2E-21 151.3 18.1 194 3-201 5-199 (203) 13 3g1l_A Transcriptional regulat 99.8 2.5E-16 1.1E-20 145.5 21.7 182 3-184 40-229 (256) 14 2iai_A Putative transcriptiona 99.8 5.5E-17 2.4E-21 150.6 18.3 163 2-165 25-190 (230) 15 3g7r_A Putative transcriptiona 99.8 4.3E-17 1.9E-21 151.4 17.6 99 3-101 31-129 (221) 16 2gen_A Probable transcriptiona 99.8 1E-16 4.6E-21 148.4 19.5 177 3-180 3-186 (197) 17 1vi0_A Transcriptional regulat 99.8 2E-16 8.8E-21 146.2 20.5 171 1-172 1-179 (206) 18 2hyj_A Putative TETR-family tr 99.8 6.9E-16 3.1E-20 142.0 22.5 181 3-183 8-198 (200) 19 2ibd_A Possible transcriptiona 99.8 6.6E-17 3E-21 149.9 17.2 108 3-110 10-117 (204) 20 2dg8_A Putative TETR-family tr 99.8 2.4E-16 1.1E-20 145.6 19.7 103 4-106 6-108 (193) 21 1t56_A EThr repressor; helix-t 99.8 1.3E-15 5.9E-20 139.8 23.5 179 4-182 21-207 (216) 22 2w53_A Repressor, SMet; antibi 99.8 5.6E-16 2.5E-20 142.7 21.5 180 3-182 7-198 (219) 23 3e7q_A Transcriptional regulat 99.8 6.3E-16 2.8E-20 142.3 20.9 187 3-190 10-205 (215) 24 3bjb_A Probable transcriptiona 99.8 1.2E-16 5.2E-21 148.0 17.1 180 2-184 17-197 (207) 25 3kz9_A SMCR; transcriptional r 99.7 6.4E-16 2.9E-20 142.2 20.7 177 3-181 13-194 (206) 26 3dpj_A Transcription regulator 99.7 8.2E-16 3.6E-20 141.4 21.0 98 3-100 4-101 (194) 27 3cjd_A Transcriptional regulat 99.7 7.9E-16 3.5E-20 141.5 20.7 165 2-166 7-175 (198) 28 3knw_A Putative transcriptiona 99.7 2.5E-16 1.1E-20 145.4 18.2 97 3-99 10-106 (212) 29 2g3b_A Putative TETR-family tr 99.7 4.9E-16 2.2E-20 143.1 19.3 184 6-190 2-192 (208) 30 2hyt_A TETR-family transcripti 99.7 1E-15 4.5E-20 140.7 20.8 160 5-166 10-171 (197) 31 3jsj_A Putative TETR-family tr 99.7 1.1E-16 5E-21 148.2 15.8 178 2-184 4-186 (190) 32 2fbq_A Probable transcriptiona 99.7 3.1E-16 1.4E-20 144.7 18.1 91 3-93 3-97 (235) 33 3ccy_A Putative TETR-family tr 99.7 4.6E-16 2.1E-20 143.4 18.6 138 3-140 10-149 (203) 34 3dew_A Transcriptional regulat 99.7 4.2E-16 1.9E-20 143.7 18.2 108 4-112 5-112 (206) 35 1zk8_A Transcriptional regulat 99.7 3.5E-16 1.6E-20 144.3 17.8 104 1-105 2-105 (183) 36 3f0c_A TETR-molecule A, transc 99.7 5.4E-16 2.4E-20 142.9 18.5 101 2-102 6-106 (216) 37 2hku_A A putative transcriptio 99.7 6.4E-16 2.9E-20 142.2 18.7 104 3-107 16-119 (215) 38 2g7s_A Transcriptional regulat 99.7 9.6E-16 4.3E-20 140.9 19.6 99 2-100 3-101 (194) 39 2rae_A Transcriptional regulat 99.7 1.1E-16 5.1E-21 148.1 14.9 173 1-174 11-185 (207) 40 3bhq_A Transcriptional regulat 99.7 2.7E-15 1.2E-19 137.4 21.8 191 3-197 8-210 (211) 41 1ui5_A A-factor receptor homol 99.7 7.7E-16 3.4E-20 141.6 18.9 100 3-102 5-104 (215) 42 2qko_A Possible transcriptiona 99.7 1.4E-16 6E-21 147.5 14.2 182 3-184 24-208 (215) 43 3he0_A Transcriptional regulat 99.7 6.4E-16 2.9E-20 142.2 17.6 181 1-182 4-190 (196) 44 2nx4_A Transcriptional regulat 99.7 1.9E-15 8.3E-20 138.6 19.9 178 3-182 6-191 (194) 45 3bni_A Putative TETR-family tr 99.7 1.8E-16 8E-21 146.6 14.5 102 2-103 38-141 (229) 46 2gfn_A HTH-type transcriptiona 99.7 2E-16 8.9E-21 146.2 14.7 164 2-165 4-175 (209) 47 3frq_A Repressor protein MPHR( 99.7 3.4E-16 1.5E-20 144.4 15.2 167 1-173 2-168 (195) 48 3kkd_A Transcriptional regulat 99.7 2.9E-15 1.3E-19 137.1 19.8 81 3-83 31-111 (237) 49 3geu_A Intercellular adhesion 99.7 1.2E-15 5.2E-20 140.2 17.8 96 5-100 1-96 (189) 50 3col_A Putative transcription 99.7 3.3E-16 1.5E-20 144.5 14.8 167 1-169 4-176 (196) 51 1pb6_A Hypothetical transcript 99.7 2.8E-15 1.2E-19 137.3 19.4 107 3-110 14-120 (212) 52 2rek_A Putative TETR-family tr 99.7 2.3E-16 1E-20 145.7 13.8 102 4-107 13-114 (199) 53 2o7t_A Transcriptional regulat 99.7 4.9E-16 2.2E-20 143.2 15.5 91 1-91 2-93 (199) 54 2eh3_A Transcriptional regulat 99.7 1.5E-14 6.6E-19 131.6 23.0 168 7-184 2-170 (179) 55 2zb9_A Putative transcriptiona 99.7 3.8E-15 1.7E-19 136.2 20.0 96 3-103 19-114 (214) 56 2id6_A Transcriptional regulat 99.7 4.4E-15 2E-19 135.7 19.9 168 5-172 3-176 (202) 57 1rkt_A Protein YFIR; transcrip 99.7 2.5E-15 1.1E-19 137.6 18.6 94 5-99 10-103 (205) 58 2id3_A Putative transcriptiona 99.7 1.2E-15 5.4E-20 140.1 16.8 89 4-97 37-125 (225) 59 2dg7_A Putative transcriptiona 99.7 1.6E-16 7.1E-21 147.0 12.1 177 1-182 1-181 (195) 60 3b81_A Transcriptional regulat 99.7 3.3E-16 1.5E-20 144.5 13.6 101 2-102 6-106 (203) 61 2qtq_A Transcriptional regulat 99.7 1.2E-14 5.1E-19 132.4 21.3 112 3-114 12-124 (213) 62 3cdl_A Transcriptional regulat 99.7 2.9E-15 1.3E-19 137.2 17.9 96 3-98 5-100 (203) 63 2zcm_A Biofilm operon icaabcd 99.7 1.5E-15 6.9E-20 139.3 15.8 105 1-109 1-105 (192) 64 3mvp_A TETR/ACRR transcription 99.7 2.4E-14 1.1E-18 130.0 21.9 87 3-90 22-108 (217) 65 2np3_A Putative TETR-family re 99.7 6.2E-16 2.7E-20 142.4 13.6 105 3-107 26-130 (212) 66 2q24_A Putative TETR family tr 99.7 1.1E-15 4.8E-20 140.5 14.8 108 3-112 11-118 (194) 67 2xdn_A HTH-type transcriptiona 99.7 9.4E-15 4.2E-19 133.1 19.6 180 4-183 8-200 (210) 68 2zcx_A SCO7815, TETR-family tr 99.7 6.7E-15 3E-19 134.3 18.7 104 2-107 18-121 (231) 69 3bru_A Regulatory protein, TET 99.7 2.2E-15 9.9E-20 138.0 15.9 99 3-101 26-125 (222) 70 3egq_A TETR family transcripti 99.7 9.6E-15 4.3E-19 133.0 19.0 158 6-179 3-160 (170) 71 2fd5_A Transcriptional regulat 99.7 5.6E-16 2.5E-20 142.7 12.6 83 1-83 1-83 (180) 72 3eup_A Transcriptional regulat 99.7 4.3E-15 1.9E-19 135.7 16.8 91 4-94 8-98 (204) 73 3c2b_A Transcriptional regulat 99.7 2.9E-15 1.3E-19 137.1 15.8 99 1-99 9-107 (221) 74 2d6y_A Putative TETR family re 99.7 1.9E-14 8.6E-19 130.7 20.0 98 3-107 4-101 (202) 75 2yve_A Transcriptional regulat 99.7 3.4E-15 1.5E-19 136.6 16.1 88 6-93 3-90 (185) 76 2qco_A CMER; transcriptional r 99.7 9.2E-15 4.1E-19 133.2 18.1 95 6-100 12-108 (210) 77 2qwt_A Transcriptional regulat 99.7 1.9E-15 8.4E-20 138.6 14.3 102 4-107 10-111 (196) 78 2ras_A Transcriptional regulat 99.7 3.1E-15 1.4E-19 136.9 15.3 98 3-100 7-104 (212) 79 3cwr_A Transcriptional regulat 99.7 3.1E-15 1.4E-19 136.9 14.8 89 3-94 13-101 (208) 80 3gzi_A Transcriptional regulat 99.7 3.5E-15 1.6E-19 136.5 15.0 109 3-113 13-121 (218) 81 2hxo_A Putative TETR-family tr 99.7 7.4E-15 3.3E-19 134.0 16.5 113 4-118 13-125 (237) 82 3bqz_B HTH-type transcriptiona 99.7 1.6E-14 7.2E-19 131.3 17.9 93 7-99 2-94 (194) 83 2pz9_A Putative regulatory pro 99.7 1.4E-15 6.1E-20 139.7 12.2 101 3-110 26-126 (226) 84 2jj7_A Hemolysin II regulatory 99.7 5E-16 2.2E-20 143.1 9.8 110 3-113 3-112 (186) 85 2of7_A Putative TETR-family tr 99.7 1.2E-15 5.2E-20 140.2 11.4 165 4-172 45-214 (260) 86 2oi8_A Putative regulatory pro 99.7 2.4E-15 1.1E-19 137.7 13.0 102 2-107 11-112 (216) 87 1t33_A Putative transcriptiona 99.6 8.1E-14 3.6E-18 125.8 20.0 71 2-73 7-77 (224) 88 2v57_A TETR family transcripti 99.6 9.5E-15 4.2E-19 133.1 15.1 147 4-157 11-157 (190) 89 2hxi_A Putative transcriptiona 99.6 3E-15 1.3E-19 137.0 12.5 104 1-108 23-126 (241) 90 2guh_A Putative TETR-family tr 99.6 4.3E-15 1.9E-19 135.8 12.9 99 2-107 34-132 (214) 91 3kkc_A TETR family transcripti 99.6 1.8E-14 8E-19 130.9 15.5 155 4-171 9-163 (177) 92 2opt_A Actii protein; helical 99.6 4.8E-15 2.1E-19 135.4 11.9 95 7-105 6-100 (234) 93 1sgm_A Putative HTH-type trans 99.6 1.1E-14 4.7E-19 132.7 13.3 98 1-99 1-99 (191) 94 2fq4_A Transcriptional regulat 99.6 2.1E-14 9.4E-19 130.4 14.8 64 4-67 9-72 (192) 95 2iu5_A DHAS, hypothetical prot 99.6 1.6E-13 7.3E-18 123.4 18.3 96 3-106 9-104 (195) 96 2g7l_A TETR-family transcripti 99.6 6.1E-15 2.7E-19 134.6 9.6 100 5-107 17-116 (243) 97 2vpr_A Tetracycline resistance 99.6 4.1E-15 1.8E-19 136.0 8.1 98 7-106 4-101 (207) 98 2vke_A Tetracycline repressor 99.6 1E-14 4.5E-19 132.8 9.2 97 8-106 4-100 (207) 99 3fiw_A Putative TETR-family tr 99.6 5E-14 2.2E-18 127.4 12.7 100 6-107 24-123 (211) 100 3bqy_A Putative TETR family tr 99.6 9.6E-15 4.3E-19 133.1 8.5 97 8-106 3-99 (209) 101 2i10_A Putative TETR transcrip 99.5 1.1E-14 5.1E-19 132.4 8.0 81 3-83 7-87 (202) 102 1z0x_A Transcriptional regulat 99.5 1.8E-14 8E-19 130.9 8.4 98 4-106 2-100 (220) 103 2g7g_A RHA04620, putative tran 99.5 4.6E-14 2E-18 127.8 7.7 98 4-107 8-105 (213) 104 3ljl_A Transcriptional regulat 99.5 6.5E-14 2.9E-18 126.5 8.4 69 3-71 10-78 (156) 105 1jko_C HIN recombinase, DNA-in 95.8 0.0053 2.4E-07 41.2 3.3 36 13-52 11-46 (52) 106 2ao9_A Phage protein; structur 94.6 0.1 4.5E-06 31.2 6.9 58 3-61 24-81 (155) 107 1jhf_A LEXA repressor; LEXA SO 92.9 0.082 3.7E-06 31.9 3.9 46 5-51 4-50 (202) 108 2hsg_A Glucose-resistance amyl 92.8 0.045 2E-06 34.0 2.4 36 27-62 2-37 (332) 109 2rn7_A IS629 ORFA; helix, all 91.8 0.37 1.6E-05 26.8 6.1 44 5-48 8-51 (108) 110 3h5t_A Transcriptional regulat 91.0 0.12 5.3E-06 30.6 2.9 36 26-61 8-43 (366) 111 2o20_A Catabolite control prot 90.5 0.037 1.7E-06 34.5 0.0 36 26-61 4-39 (332) 112 1j5y_A Transcriptional regulat 90.2 0.21 9.5E-06 28.6 3.6 40 5-50 19-59 (187) 113 1uxc_A FRUR (1-57), fructose r 90.2 0.085 3.8E-06 31.7 1.6 26 28-53 1-26 (65) 114 1jye_A Lactose operon represso 89.6 0.049 2.2E-06 33.6 0.0 32 26-57 2-33 (349) 115 1qpz_A PURA, protein (purine n 89.4 0.1 4.5E-06 31.2 1.5 27 28-54 1-27 (340) 116 1bl0_A Protein (multiple antib 89.4 0.18 8.1E-06 29.2 2.8 51 1-51 1-51 (129) 117 3kjx_A Transcriptional regulat 89.0 0.12 5.4E-06 30.5 1.6 29 26-54 9-37 (344) 118 3dbi_A Sugar-binding transcrip 89.0 0.058 2.6E-06 33.0 0.0 28 27-54 3-30 (338) 119 3bil_A Probable LACI-family tr 88.6 0.065 2.9E-06 32.6 0.0 28 27-54 8-35 (348) 120 3jvd_A Transcriptional regulat 88.6 0.065 2.9E-06 32.6 0.0 32 26-57 5-36 (333) 121 3h5o_A Transcriptional regulat 88.4 0.068 3E-06 32.5 0.0 31 27-57 4-34 (339) 122 2p4w_A Transcriptional regulat 87.9 0.44 1.9E-05 26.2 3.9 40 6-52 14-53 (202) 123 2fjr_A Repressor protein CI; g 87.8 0.47 2.1E-05 25.9 4.0 42 1-51 3-44 (189) 124 2a6c_A Helix-turn-helix motif; 86.5 0.87 3.9E-05 23.9 4.8 43 7-52 14-56 (83) 125 3b7h_A Prophage LP1 protein 11 86.3 0.91 4E-05 23.7 4.8 40 10-52 6-45 (78) 126 1u78_A TC3 transposase, transp 86.3 0.43 1.9E-05 26.2 3.1 39 6-52 9-47 (141) 127 2ezk_A Transposase; DNA-bindin 86.2 0.9 4E-05 23.7 4.7 48 4-52 30-78 (99) 128 2kpj_A SOS-response transcript 86.1 0.81 3.6E-05 24.1 4.5 43 7-52 5-47 (94) 129 3e3m_A Transcriptional regulat 85.7 0.12 5.3E-06 30.6 0.0 32 23-54 8-39 (355) 130 2k27_A Paired box protein PAX- 85.6 0.72 3.2E-05 24.5 4.0 39 5-51 27-65 (159) 131 1uly_A Hypothetical protein PH 85.4 0.49 2.2E-05 25.8 3.0 39 6-51 19-57 (192) 132 1y0u_A Arsenical resistance op 85.3 0.71 3.1E-05 24.6 3.8 40 5-52 29-68 (96) 133 2b5a_A C.BCLI; helix-turn-heli 84.9 1.5 6.6E-05 22.0 5.3 48 4-54 3-50 (77) 134 2oqg_A Possible transcriptiona 84.0 0.91 4E-05 23.7 3.9 40 5-51 19-58 (114) 135 3f6o_A Probable transcriptiona 83.6 0.49 2.2E-05 25.8 2.4 40 5-51 16-55 (118) 136 3mkl_A HTH-type transcriptiona 83.6 0.95 4.3E-05 23.5 3.9 39 12-50 8-46 (120) 137 1ku9_A Hypothetical protein MJ 83.1 1.9 8.2E-05 21.3 5.2 46 6-51 5-65 (152) 138 2zkz_A Transcriptional repress 82.9 0.98 4.3E-05 23.5 3.7 39 5-49 25-63 (99) 139 3ctp_A Periplasmic binding pro 82.8 0.19 8.4E-06 29.0 0.0 27 28-54 3-29 (330) 140 2k9s_A Arabinose operon regula 82.8 0.99 4.4E-05 23.4 3.7 44 11-54 3-47 (107) 141 1mkm_A ICLR transcriptional re 82.7 0.6 2.7E-05 25.1 2.6 34 17-51 14-47 (249) 142 3kz3_A Repressor protein CI; f 82.6 1.3 5.7E-05 22.6 4.2 53 2-57 3-55 (80) 143 1u8b_A ADA polyprotein; protei 82.4 1.4 6.3E-05 22.2 4.4 28 25-52 91-118 (133) 144 2ef8_A C.ECOT38IS, putative tr 82.4 1.9 8.3E-05 21.3 4.9 54 5-61 4-57 (84) 145 3cuo_A Uncharacterized HTH-typ 82.1 1.2 5.2E-05 22.8 3.9 39 6-50 23-61 (99) 146 2ia2_A Putative transcriptiona 81.9 1.1 4.8E-05 23.1 3.6 42 12-54 19-63 (265) 147 1r1u_A CZRA, repressor protein 81.5 1.3 5.6E-05 22.6 3.8 39 5-50 24-62 (106) 148 2jsc_A Transcriptional regulat 81.3 0.52 2.3E-05 25.6 1.8 39 5-50 19-57 (118) 149 3hef_A Gene 1 protein; bacteri 81.2 2.4 0.00011 20.4 10.2 45 11-59 19-64 (143) 150 1r1t_A Transcriptional repress 81.1 1.3 5.6E-05 22.6 3.7 38 6-50 45-82 (122) 151 1y7y_A C.AHDI; helix-turn-heli 81.0 1.9 8.4E-05 21.2 4.6 54 1-57 1-56 (74) 152 3mn2_A Probable ARAC family tr 81.0 1.3 5.9E-05 22.4 3.8 40 13-52 4-43 (108) 153 1on2_A Transcriptional regulat 80.5 2 8.8E-05 21.1 4.6 41 6-48 3-43 (142) 154 1u2w_A CADC repressor, cadmium 80.4 1.4 6.3E-05 22.2 3.8 38 6-49 41-78 (122) 155 1y9q_A Transcriptional regulat 80.3 2.5 0.00011 20.3 5.0 61 1-64 1-61 (192) 156 3f6v_A Possible transcriptiona 80.3 0.5 2.2E-05 25.7 1.4 39 5-50 56-94 (151) 157 3jth_A Transcription activator 80.0 0.7 3.1E-05 24.6 2.1 39 6-51 22-60 (98) 158 1k78_A Paired box protein PAX5 79.5 1.7 7.4E-05 21.6 3.9 35 5-47 34-68 (149) 159 1lmb_3 Protein (lambda repress 79.2 1.5 6.5E-05 22.1 3.6 50 9-61 15-64 (92) 160 3bdn_A Lambda repressor; repre 79.1 1.8 7.9E-05 21.4 4.0 38 16-53 18-56 (236) 161 2jn6_A Protein CGL2762, transp 79.0 0.95 4.2E-05 23.5 2.5 38 6-49 8-45 (97) 162 1pdn_C Protein (PRD paired); p 78.7 1.8 8.1E-05 21.4 3.9 35 5-47 19-53 (128) 163 3eet_A Putative GNTR-family tr 78.6 2.3 0.0001 20.6 4.4 47 1-47 23-73 (272) 164 2pg4_A Uncharacterized protein 78.2 2.3 0.0001 20.6 4.3 43 11-57 16-58 (95) 165 1ub9_A Hypothetical protein PH 77.1 2.2 9.8E-05 20.7 3.9 39 6-50 15-53 (100) 166 3gbg_A TCP pilus virulence reg 76.7 2.1 9.4E-05 20.9 3.7 39 12-50 170-208 (276) 167 2elh_A CG11849-PA, LD40883P; s 75.3 1.6 7.3E-05 21.7 2.9 33 22-57 36-68 (87) 168 1d5y_A ROB transcription facto 75.2 1.2 5.2E-05 22.9 2.1 42 10-51 2-43 (292) 169 3cta_A Riboflavin kinase; stru 74.4 1.6 7.3E-05 21.7 2.7 52 1-52 1-52 (230) 170 2wiu_B HTH-type transcriptiona 74.3 2 8.7E-05 21.1 3.1 51 9-62 10-60 (88) 171 1s7o_A Hypothetical UPF0122 pr 74.3 1.9 8.4E-05 21.2 3.0 46 3-48 6-59 (113) 172 3f52_A CLP gene regulator (CLG 73.8 2.8 0.00013 19.9 3.8 51 8-61 25-75 (117) 173 3iwf_A Transcription regulator 73.1 1.5 6.8E-05 22.0 2.3 24 25-48 33-56 (107) 174 2h09_A Transcriptional regulat 71.5 4.2 0.00019 18.5 5.1 40 7-48 36-75 (155) 175 2w25_A Probable transcriptiona 71.4 3.1 0.00014 19.5 3.5 45 1-51 1-45 (150) 176 3f6w_A XRE-family like protein 70.6 4.4 0.0002 18.3 4.7 48 5-55 8-55 (83) 177 1r69_A Repressor protein CI; g 70.4 1.7 7.6E-05 21.6 2.0 32 18-52 8-39 (69) 178 2d1h_A ST1889, 109AA long hypo 70.1 3 0.00013 19.6 3.2 32 19-52 30-61 (109) 179 2zhg_A Redox-sensitive transcr 69.8 2 9E-05 21.0 2.3 27 27-55 11-37 (154) 180 1sfx_A Conserved hypothetical 69.8 3.4 0.00015 19.3 3.4 29 18-48 27-55 (109) 181 3gp4_A Transcriptional regulat 69.3 2 9E-05 21.0 2.2 21 27-47 2-22 (142) 182 1z4h_A TORI, TOR inhibition pr 69.2 2 9.1E-05 20.9 2.2 23 27-49 10-32 (66) 183 3bs3_A Putative DNA-binding pr 69.0 3 0.00014 19.6 3.1 43 16-61 15-57 (76) 184 1q06_A Transcriptional regulat 68.7 2.2 9.6E-05 20.8 2.3 26 28-55 1-26 (135) 185 2g7u_A Transcriptional regulat 68.5 0.91 4.1E-05 23.7 0.3 39 13-52 13-54 (257) 186 2cyy_A Putative HTH-type trans 68.3 4.9 0.00022 18.0 4.1 44 1-50 1-44 (151) 187 1xsv_A Hypothetical UPF0122 pr 68.0 2.6 0.00011 20.2 2.5 39 17-55 31-69 (113) 188 1fse_A GERE; helix-turn-helix 68.0 2.1 9.6E-05 20.8 2.1 26 26-51 25-50 (74) 189 3lsg_A Two-component response 67.9 4.1 0.00018 18.6 3.5 28 27-54 19-46 (103) 190 1zug_A Phage 434 CRO protein; 67.8 2 9.1E-05 21.0 2.0 32 18-52 10-41 (71) 191 2ia0_A Putative HTH-type trans 67.2 3 0.00013 19.6 2.8 40 6-51 16-55 (171) 192 1r8d_A Transcription activator 67.1 2.5 0.00011 20.3 2.3 26 28-55 3-28 (109) 193 2kko_A Possible transcriptiona 67.1 3.5 0.00015 19.1 3.1 38 6-50 24-61 (108) 194 1adr_A P22 C2 repressor; trans 67.0 2.2 9.8E-05 20.7 2.0 35 17-54 11-45 (76) 195 1b0n_A Protein (SINR protein); 66.8 2.6 0.00011 20.2 2.3 29 19-50 9-37 (111) 196 2o3f_A Putative HTH-type trans 66.5 2.5 0.00011 20.3 2.2 37 25-61 37-78 (111) 197 2o0y_A Transcriptional regulat 66.4 0.95 4.2E-05 23.5 0.1 39 13-52 22-63 (260) 198 3hug_A RNA polymerase sigma fa 66.3 3 0.00013 19.6 2.6 31 18-48 44-74 (92) 199 2cfx_A HTH-type transcriptiona 66.3 3 0.00013 19.6 2.6 40 6-51 4-43 (144) 200 1umq_A Photosynthetic apparatu 66.3 5.3 0.00024 17.7 4.0 26 20-48 50-75 (81) 201 2cg4_A Regulatory protein ASNC 65.6 4.8 0.00021 18.1 3.5 38 6-49 7-44 (152) 202 3gpv_A Transcriptional regulat 65.3 2.7 0.00012 20.0 2.2 26 28-55 17-42 (148) 203 2vz4_A Tipal, HTH-type transcr 64.6 3 0.00013 19.7 2.3 26 28-55 2-27 (108) 204 3eco_A MEPR; mutlidrug efflux 63.9 5.7 0.00025 17.5 3.6 33 16-48 36-68 (139) 205 2e1c_A Putative HTH-type trans 63.7 4 0.00018 18.7 2.8 41 4-50 24-64 (171) 206 2v79_A DNA replication protein 63.5 5.6 0.00025 17.5 3.6 37 13-49 37-73 (135) 207 2krf_A Transcriptional regulat 62.9 3.4 0.00015 19.2 2.3 25 26-50 26-50 (73) 208 3b73_A PHIH1 repressor-like pr 62.8 4.3 0.00019 18.5 2.8 40 6-51 12-53 (111) 209 1utx_A CYLR2; DNA-binding prot 62.8 3 0.00013 19.7 2.0 40 19-61 9-48 (66) 210 2ict_A Antitoxin HIGA; helix-t 62.4 4 0.00018 18.7 2.6 40 18-60 15-54 (94) 211 3hh0_A Transcriptional regulat 62.3 3.5 0.00015 19.2 2.3 26 28-55 5-30 (146) 212 3c57_A Two component transcrip 62.2 3.5 0.00016 19.1 2.3 25 27-51 42-66 (95) 213 1x3u_A Transcriptional regulat 62.0 3.5 0.00016 19.1 2.3 26 25-50 29-54 (79) 214 1je8_A Nitrate/nitrite respons 61.8 3.7 0.00016 19.0 2.4 25 26-50 35-59 (82) 215 3i4p_A Transcriptional regulat 61.6 3.5 0.00016 19.1 2.2 31 18-50 10-40 (162) 216 2q0o_A Probable transcriptiona 60.6 2.2 9.8E-05 20.7 1.1 17 11-27 22-38 (236) 217 1p4w_A RCSB; solution structur 60.5 3.7 0.00017 18.9 2.2 25 26-50 48-72 (99) 218 2jpc_A SSRB; DNA binding prote 60.5 2.7 0.00012 20.0 1.5 24 27-50 13-36 (61) 219 2p5v_A Transcriptional regulat 60.0 2.9 0.00013 19.8 1.6 41 6-52 9-49 (162) 220 3cec_A Putative antidote prote 59.9 3.3 0.00015 19.3 1.8 41 18-61 25-65 (104) 221 1z6r_A MLC protein; transcript 59.7 6.8 0.0003 16.9 4.3 46 4-51 9-54 (406) 222 2jml_A DNA binding domain/tran 59.5 3.4 0.00015 19.2 1.9 22 26-47 4-25 (81) 223 3clc_A Regulatory protein; pro 59.0 3.7 0.00017 18.9 2.0 36 16-54 16-51 (82) 224 1or7_A Sigma-24, RNA polymeras 58.8 4.5 0.0002 18.3 2.4 44 26-71 21-65 (194) 225 2p5t_A Putative transcriptiona 58.3 7.2 0.00032 16.7 4.0 35 27-61 14-48 (158) 226 3g3z_A NMB1585, transcriptiona 58.2 7.2 0.00032 16.7 3.4 30 17-48 37-66 (145) 227 2vn2_A DNAD, chromosome replic 57.8 7.3 0.00032 16.6 4.1 35 16-50 40-74 (128) 228 3g5g_A Regulatory protein; tra 57.7 4 0.00018 18.7 1.9 37 15-54 32-68 (99) 229 2o8x_A Probable RNA polymerase 57.7 5.4 0.00024 17.7 2.6 32 17-48 21-52 (70) 230 1r71_A Transcriptional repress 57.7 7.3 0.00033 16.6 4.2 32 14-49 43-74 (178) 231 2r1j_L Repressor protein C2; p 57.6 4.1 0.00018 18.6 2.0 35 18-55 12-46 (68) 232 2nyx_A Probable transcriptiona 57.6 6.9 0.00031 16.8 3.2 30 17-48 51-80 (168) 233 2hr3_A Probable transcriptiona 57.4 7.4 0.00033 16.6 3.5 27 20-47 44-70 (147) 234 2dg6_A Putative transcriptiona 57.4 4.7 0.00021 18.1 2.3 19 29-47 2-20 (222) 235 1i1g_A Transcriptional regulat 57.2 5.5 0.00025 17.6 2.6 32 18-51 11-42 (141) 236 2auw_A Hypothetical protein NE 57.1 4.9 0.00022 18.0 2.3 22 29-50 105-126 (170) 237 2v4j_C Sulfite reductase, diss 57.1 7.5 0.00033 16.5 5.2 47 6-53 43-89 (105) 238 3ivp_A Putative transposon-rel 56.1 5.2 0.00023 17.8 2.3 32 18-52 19-50 (126) 239 2pn6_A ST1022, 150AA long hypo 55.4 3.9 0.00017 18.8 1.6 32 18-51 10-41 (150) 240 2bnm_A Epoxidase; oxidoreducta 55.4 4.9 0.00022 18.0 2.1 34 17-50 13-46 (198) 241 1neq_A DNA-binding protein NER 55.2 6.7 0.0003 16.9 2.8 37 20-59 18-58 (74) 242 2ofy_A Putative XRE-family tra 55.0 5.6 0.00025 17.5 2.3 35 13-51 17-51 (86) 243 1wh5_A ZF-HD homeobox family p 55.0 7.4 0.00033 16.6 3.0 30 23-52 44-73 (80) 244 1l3l_A Transcriptional activat 54.4 3.2 0.00014 19.4 1.1 11 30-40 25-35 (234) 245 2k9l_A RNA polymerase sigma fa 54.1 8.3 0.00037 16.2 3.2 35 10-44 31-65 (76) 246 3e7l_A Transcriptional regulat 54.0 5.8 0.00026 17.4 2.3 21 28-48 33-53 (63) 247 3fmy_A HTH-type transcriptiona 53.8 4.9 0.00022 18.0 1.9 27 26-52 23-49 (73) 248 2eby_A Putative HTH-type trans 53.3 4.9 0.00022 18.0 1.8 39 24-62 21-59 (113) 249 3bdd_A Regulatory protein MARR 52.8 8.7 0.00039 16.0 3.3 28 19-48 39-66 (142) 250 2rnj_A Response regulator prot 52.1 4.2 0.00019 18.5 1.3 26 26-51 43-68 (91) 251 1rzs_A Antirepressor, regulato 51.3 6.7 0.0003 16.9 2.3 19 29-47 12-30 (61) 252 3i9v_2 NADH-quinone oxidoreduc 51.2 5.6 0.00025 17.6 1.8 11 30-40 46-56 (181) 253 3eus_A DNA-binding protein; st 50.3 9.4 0.00042 15.8 4.0 50 9-61 12-61 (86) 254 3mlf_A Transcriptional regulat 50.2 5.3 0.00024 17.7 1.6 38 27-64 36-73 (111) 255 3kxa_A NGO0477 protein, putati 50.1 4.2 0.00019 18.5 1.1 36 26-61 80-115 (141) 256 2ppx_A AGR_C_3184P, uncharacte 50.1 7.3 0.00033 16.6 2.3 27 26-52 42-68 (99) 257 3klo_A Transcriptional regulat 49.9 7.3 0.00033 16.6 2.3 10 46-55 62-71 (225) 258 2dbb_A Putative HTH-type trans 49.5 7.5 0.00034 16.5 2.3 39 6-50 8-46 (151) 259 1eto_A FIS, factor for inversi 49.4 7.6 0.00034 16.5 2.3 19 29-47 73-91 (98) 260 3boq_A Transcriptional regulat 48.9 6.6 0.00029 17.0 1.9 29 19-48 55-83 (160) 261 1ji8_A Dissimilatory siroheme- 48.8 4.3 0.00019 18.4 1.0 46 6-52 49-94 (111) 262 1x57_A Endothelial differentia 48.6 4.8 0.00021 18.0 1.2 29 26-54 25-53 (91) 263 1s3j_A YUSO protein; structura 48.5 10 0.00044 15.6 3.1 21 27-47 51-71 (155) 264 2qlz_A Transcription factor PF 48.3 2.1 9.3E-05 20.9 -0.7 41 5-52 10-50 (232) 265 3jw4_A Transcriptional regulat 48.2 5.8 0.00026 17.4 1.6 29 18-46 48-76 (148) 266 2qww_A Transcriptional regulat 48.1 10 0.00045 15.5 3.5 20 27-46 55-74 (154) 267 3d1n_I POU domain, class 6, tr 47.9 10 0.00045 15.5 4.0 16 27-42 21-36 (151) 268 3clo_A Transcriptional regulat 47.6 8.6 0.00038 16.1 2.3 23 27-49 212-234 (258) 269 3bd1_A CRO protein; transcript 46.4 11 0.00048 15.3 3.3 29 13-48 4-32 (79) 270 2w48_A Sorbitol operon regulat 45.7 11 0.00049 15.3 4.7 35 12-49 9-43 (315) 271 3ech_A MEXR, multidrug resista 45.6 11 0.00049 15.2 2.7 22 26-47 50-71 (142) 272 2ewt_A BLDD, putative DNA-bind 45.5 9.3 0.00042 15.8 2.3 31 21-54 18-50 (71) 273 1ku3_A Sigma factor SIGA; heli 45.5 10 0.00045 15.5 2.4 28 19-46 22-49 (73) 274 1akh_A Protein (mating-type pr 45.4 11 0.00049 15.2 3.2 39 11-52 18-57 (61) 275 3gn5_A HTH-type transcriptiona 45.2 8 0.00036 16.3 1.9 27 25-51 82-108 (133) 276 3bpv_A Transcriptional regulat 45.2 11 0.00049 15.2 3.7 29 17-47 35-63 (138) 277 3hrs_A Metalloregulator SCAR; 45.1 7.2 0.00032 16.6 1.6 39 8-48 3-41 (214) 278 1zx4_A P1 PARB, plasmid partit 44.7 11 0.0005 15.1 4.0 28 19-49 19-46 (192) 279 2nnn_A Probable transcriptiona 44.7 11 0.0005 15.1 3.2 21 27-47 52-72 (140) 280 2fe3_A Peroxide operon regulat 44.3 11 0.00051 15.1 4.3 39 4-47 19-62 (145) 281 2da4_A Hypothetical protein DK 44.2 11 0.00051 15.1 2.5 43 13-55 20-67 (80) 282 1ocp_A OCT-3; DNA-binding prot 44.0 12 0.00051 15.1 2.7 39 14-52 21-60 (67) 283 3bro_A Transcriptional regulat 43.2 12 0.00053 15.0 3.6 29 18-46 41-69 (141) 284 3mky_B Protein SOPB; partition 43.2 12 0.00053 15.0 3.8 28 21-49 37-64 (189) 285 3dbw_A Transcriptional regulat 43.2 12 0.00053 15.0 4.9 43 4-46 17-62 (226) 286 1r8e_A Multidrug-efflux transp 43.2 11 0.00047 15.4 2.2 26 28-55 6-31 (278) 287 2rdp_A Putative transcriptiona 43.1 12 0.00053 15.0 3.4 21 27-47 56-76 (150) 288 3f3x_A Transcriptional regulat 43.0 12 0.00053 15.0 3.4 20 28-47 51-70 (144) 289 1lj9_A Transcriptional regulat 42.6 12 0.00054 14.9 3.3 29 17-47 35-63 (144) 290 2d5v_A Hepatocyte nuclear fact 42.2 8.1 0.00036 16.3 1.5 10 37-46 32-41 (164) 291 2a61_A Transcriptional regulat 42.1 12 0.00055 14.9 3.2 27 19-47 41-67 (145) 292 1bw5_A ISL-1HD, insulin gene e 41.6 8.8 0.00039 16.0 1.6 38 15-52 17-55 (66) 293 2fa5_A Transcriptional regulat 41.5 13 0.00056 14.8 2.8 31 17-49 55-85 (162) 294 2ecc_A Homeobox and leucine zi 40.9 13 0.00057 14.7 3.1 44 9-55 14-58 (76) 295 1rp3_A RNA polymerase sigma fa 40.9 13 0.00057 14.7 2.7 13 9-21 14-26 (239) 296 3cdh_A Transcriptional regulat 40.7 13 0.00057 14.7 2.7 21 27-47 57-77 (155) 297 3frw_A Putative Trp repressor 40.6 13 0.00056 14.8 2.3 18 29-46 60-77 (107) 298 2p7v_B Sigma-70, RNA polymeras 40.4 13 0.00056 14.7 2.3 26 21-46 19-44 (68) 299 3cmy_A HUP2, paired box protei 40.0 9.5 0.00042 15.7 1.6 39 15-53 16-55 (61) 300 1c9b_A General transcription f 39.8 13 0.00059 14.6 2.9 39 9-48 47-86 (207) 301 3bja_A Transcriptional regulat 39.7 13 0.00058 14.6 2.3 27 18-46 40-66 (139) 302 1z91_A Organic hydroperoxide r 39.4 13 0.0006 14.6 2.6 25 20-46 49-73 (147) 303 2ecb_A Zinc fingers and homeob 38.9 9.8 0.00044 15.6 1.5 38 16-53 26-64 (89) 304 3deu_A Transcriptional regulat 38.5 14 0.00061 14.5 3.3 20 27-46 68-87 (166) 305 2eth_A Transcriptional regulat 38.2 14 0.00062 14.4 3.2 27 18-46 51-77 (154) 306 2pex_A Transcriptional regulat 38.2 14 0.00062 14.4 3.2 28 18-47 54-81 (153) 307 2kfs_A Conserved hypothetical 38.0 8.4 0.00038 16.1 1.1 26 27-52 31-56 (148) 308 2da1_A Alpha-fetoprotein enhan 37.6 11 0.00049 15.2 1.6 38 16-53 22-60 (70) 309 1fx7_A Iron-dependent represso 37.5 14 0.00063 14.3 4.7 40 7-48 6-45 (230) 310 2cqx_A LAG1 longevity assuranc 37.1 14 0.00064 14.3 2.5 36 18-53 25-62 (72) 311 1ntc_A Protein (nitrogen regul 36.8 9.4 0.00042 15.8 1.2 18 29-46 66-83 (91) 312 2da2_A Alpha-fetoprotein enhan 36.5 11 0.00048 15.3 1.4 38 16-53 22-60 (70) 313 2e19_A Transcription factor 8; 36.3 14 0.00061 14.5 1.9 40 13-52 15-55 (64) 314 2dmq_A LIM/homeobox protein LH 36.1 15 0.00066 14.2 3.4 39 15-53 21-60 (80) 315 3cjn_A Transcriptional regulat 34.9 16 0.00069 14.0 3.2 18 28-45 67-84 (162) 316 2dmu_A Homeobox protein goosec 34.7 16 0.0007 14.0 3.5 41 13-53 19-60 (70) 317 2qq9_A Diphtheria toxin repres 34.6 16 0.0007 14.0 5.2 42 6-49 5-46 (226) 318 2da5_A Zinc fingers and homeob 34.5 16 0.0007 14.0 3.2 39 11-52 20-59 (75) 319 2jvl_A TRMBF1; coactivator, he 34.4 16 0.0007 14.0 4.0 48 14-61 36-83 (107) 320 1uhs_A HOP, homeodomain only p 34.2 16 0.00071 14.0 3.2 41 14-54 14-56 (72) 321 2dn0_A Zinc fingers and homeob 34.1 13 0.00057 14.7 1.5 39 11-52 21-60 (76) 322 2da7_A Zinc finger homeobox pr 34.1 13 0.0006 14.5 1.6 40 14-53 18-58 (71) 323 2w57_A Ferric uptake regulatio 33.9 16 0.00072 13.9 3.7 40 5-48 15-59 (150) 324 2hi3_A Homeodomain-only protei 33.5 16 0.00073 13.9 3.5 39 15-53 16-56 (73) 325 2gmg_A Hypothetical protein PF 33.4 10 0.00045 15.5 0.9 35 6-47 10-48 (105) 326 3g7d_A PHPD; non heme Fe(II) d 33.4 16 0.00073 13.9 4.3 45 19-66 238-283 (443) 327 2fbi_A Probable transcriptiona 33.2 16 0.00073 13.9 3.0 24 26-49 49-72 (142) 328 1x2m_A LAG1 longevity assuranc 32.8 17 0.00074 13.8 3.3 35 18-52 17-53 (64) 329 2hs5_A Putative transcriptiona 32.8 17 0.00074 13.8 4.6 44 4-47 25-71 (239) 330 3hyi_A Protein DUF199/WHIA; la 32.8 12 0.00055 14.8 1.2 12 178-189 277-288 (295) 331 2cue_A Paired box protein PAX6 32.6 14 0.00063 14.3 1.5 42 14-55 20-62 (80) 332 3hsr_A HTH-type transcriptiona 32.6 17 0.00075 13.8 2.3 24 24-47 47-70 (140) 333 2frh_A SARA, staphylococcal ac 32.2 17 0.00076 13.7 2.8 29 20-48 46-74 (127) 334 2k40_A Homeobox expressed in E 32.2 17 0.00076 13.7 3.0 41 13-53 13-54 (67) 335 1g2h_A Transcriptional regulat 32.1 17 0.00075 13.8 1.8 19 28-46 34-52 (61) 336 2e1o_A Homeobox protein PRH; D 31.3 15 0.00069 14.1 1.5 37 17-53 23-60 (70) 337 3k0l_A Repressor protein; heli 31.2 18 0.00078 13.6 3.4 17 28-44 61-77 (162) 338 1mnm_C Protein (MAT alpha-2 tr 30.9 18 0.00079 13.6 3.4 39 14-52 40-82 (87) 339 1wi3_A DNA-binding protein SAT 30.8 18 0.0008 13.6 3.3 36 17-52 23-60 (71) 340 1le8_B Mating-type protein alp 30.8 18 0.0008 13.6 3.5 37 16-52 17-57 (83) 341 2ek5_A Predicted transcription 30.3 18 0.00081 13.5 4.2 40 9-48 6-49 (129) 342 2obp_A Putative DNA-binding pr 30.2 18 0.00081 13.5 3.7 40 8-47 17-56 (96) 343 2bv6_A MGRA, HTH-type transcri 30.2 18 0.00082 13.5 2.5 21 27-47 51-71 (142) 344 2da3_A Alpha-fetoprotein enhan 29.6 19 0.00083 13.4 3.2 36 18-53 34-70 (80) 345 2cra_A Homeobox protein HOX-B1 29.4 17 0.00078 13.7 1.5 37 16-52 22-59 (70) 346 2djn_A Homeobox protein DLX-5; 28.9 17 0.00077 13.7 1.4 40 13-52 19-59 (70) 347 3e6m_A MARR family transcripti 28.8 19 0.00086 13.3 2.8 15 29-43 69-83 (161) 348 2h1k_A IPF-1, pancreatic and d 28.5 19 0.00087 13.3 3.5 41 13-53 15-56 (63) 349 1v4r_A Transcriptional repress 28.5 19 0.00087 13.3 3.4 42 9-50 13-58 (102) 350 1tty_A Sigma-A, RNA polymerase 28.2 20 0.00087 13.3 2.4 26 20-45 31-56 (87) 351 1jgs_A Multiple antibiotic res 27.5 20 0.0009 13.2 3.1 21 27-47 48-68 (138) 352 2vi6_A Homeobox protein nanog; 27.3 20 0.0009 13.1 3.5 39 14-52 16-55 (62) 353 3c7j_A Transcriptional regulat 27.0 21 0.00091 13.1 5.3 42 6-47 25-69 (237) 354 1jgg_A Segmentation protein EV 27.0 21 0.00091 13.1 3.5 40 14-53 14-54 (60) 355 1du6_A PBX1, homeobox protein 27.0 21 0.00091 13.1 1.6 26 26-51 32-57 (64) 356 2ev1_A Hypothetical protein RV 26.9 21 0.00092 13.1 2.8 30 18-48 70-99 (222) 357 2hqv_A AGR_C_4470P; NESG, ATR9 26.6 11 0.00049 15.2 0.1 49 1-51 14-62 (195) 358 2ogf_A Hypothetical protein MJ 26.5 9.5 0.00042 15.7 -0.2 36 22-57 11-54 (122) 359 1stz_A Heat-inducible transcri 26.1 21 0.00095 13.0 3.3 49 5-54 15-65 (338) 360 2cuf_A FLJ21616 protein; homeo 25.4 22 0.00097 12.9 2.9 40 13-52 19-74 (95) 361 2gxg_A 146AA long hypothetical 25.3 22 0.00098 12.9 3.1 21 27-47 50-70 (146) 362 3by6_A Predicted transcription 24.6 23 0.001 12.8 4.2 41 7-47 11-55 (126) 363 2o38_A Hypothetical protein; a 24.3 23 0.001 12.7 4.7 41 8-51 37-77 (120) 364 3k7a_M Transcription initiatio 24.2 12 0.00055 14.8 0.0 20 29-48 188-207 (345) 365 1k61_A Mating-type protein alp 24.0 23 0.001 12.7 3.4 39 11-52 11-53 (60) 366 1ais_B TFB TFIIB, protein (tra 23.7 23 0.001 12.7 3.6 40 9-49 51-91 (200) 367 3e6c_C CPRK, cyclic nucleotide 23.6 23 0.001 12.6 4.6 29 39-67 107-135 (250) 368 2iec_A Uncharacterized protein 23.1 12 0.00054 14.9 -0.2 27 24-50 5-32 (131) 369 2fxa_A Protease production reg 23.0 24 0.0011 12.6 3.0 22 26-47 61-82 (207) 370 3lhi_A Putative 6-phosphogluco 22.9 24 0.0011 12.5 3.1 44 44-87 4-53 (232) 371 1b72_A Protein (homeobox prote 22.8 24 0.0011 12.5 2.9 42 13-54 46-88 (97) 372 2k9m_A RNA polymerase sigma fa 22.7 22 0.00099 12.8 1.0 33 9-41 21-53 (130) 373 2dmt_A Homeobox protein BARH-l 22.6 24 0.0011 12.5 3.5 42 12-53 28-70 (80) 374 2wv0_A YVOA, HTH-type transcri 22.5 25 0.0011 12.5 5.1 40 7-46 10-53 (243) 375 1yz8_P Pituitary homeobox 2; D 22.5 17 0.00077 13.7 0.5 40 14-53 16-56 (68) 376 1zq3_P PRD-4, homeotic bicoid 22.4 25 0.0011 12.5 1.6 41 14-54 15-56 (68) 377 2i52_A Hypothetical protein; s 21.9 22 0.00097 12.9 0.9 35 23-58 8-50 (121) 378 2hdd_A Protein (engrailed home 21.9 25 0.0011 12.4 3.5 41 13-53 15-56 (61) 379 2o0m_A Transcriptional regulat 21.8 15 0.00066 14.2 0.0 39 6-50 19-57 (345) 380 1tlh_B Sigma-70, RNA polymeras 21.7 14 0.00063 14.4 -0.1 25 21-45 32-56 (81) 381 2ovi_A Hypothetical protein CH 21.1 26 0.0012 12.3 2.5 26 27-52 15-40 (164) 382 1b8i_A Ultrabithorax, protein 21.0 26 0.0012 12.3 3.5 41 12-52 31-72 (81) 383 3eyy_A Putative iron uptake re 20.8 26 0.0012 12.3 4.7 38 4-47 16-58 (145) 384 2vt3_A REX, redox-sensing tran 20.8 26 0.0012 12.2 3.3 37 14-50 20-59 (215) 385 2heo_A Z-DNA binding protein 1 20.7 26 0.0012 12.2 3.3 41 1-46 4-44 (67) 386 1z05_A Transcriptional regulat 20.4 27 0.0012 12.2 4.6 43 5-49 33-75 (429) 387 2itb_A TRNA-(MS(2)IO(6)A)-hydr 20.1 27 0.0012 12.1 3.1 34 35-69 41-74 (206) No 1 >3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A* Probab=99.85 E-value=9.9e-19 Score=164.24 Aligned_cols=182 Identities=16% Similarity=0.230 Sum_probs=137.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.++||++||++|++||.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++.+ T Consensus 37 ~r~~~tR~~Il~aA~~Lf~e~G~~~~T~~~IA~~AGvs~~t~Y~hF~sK~~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~ 116 (273) T 3c07_A 37 SKSEQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVREVLARETDLEA 116 (273) T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTTHHHHCCSHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 88899999999999999998493317899999998919999999959878999999999999999999998735999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 999999999999875189999999987446785-----889999999999999999970678778777899999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHI-----HIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (213) .+..++..+++....++.....++......... .............+.....................++...+. T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273) T 3c07_A 117 RLAGVLKVWLDIATPYHEFAVQFFKNAADPDSPLSPFSPESEHARVEAIGIHRAVLAGAKTKVPEELRDILPELMWLSQM 196 (273) T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHTCTTSTTSTTSGGGHHHHHHHHHHHHHHHHTSSSCCCGGGTTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999887999999998526752245789999999999999999998616656880378999999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 999987359997758999999999999 Q T0596 158 MTFFFWMRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 184 (213) +.+.+|+.+..++...+..++++.... T Consensus 197 gl~~~wl~~~~~~~~~~~~~~~~~~~l 223 (273) T 3c07_A 197 GLVLYWIFDRTEGRERSYRLAERGARL 223 (273) T ss_dssp HHHHHHHHCCSTTSHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 999999548999842799999999999 No 2 >2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} Probab=99.83 E-value=9.8e-18 Score=156.45 Aligned_cols=180 Identities=13% Similarity=0.116 Sum_probs=125.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .++++||++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+...+... ...++.+ T Consensus 9 ~~~e~rR~~Il~AA~~l~~~~G~~~~tv~~IA~~aGvs~~tlY~yF~sK~~L~~a~~~~~~~~~~~~~~~~--~~~~~~~ 86 (231) T 2qib_A 9 MGVEERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVEP--RQGPLGA 86 (231) T ss_dssp CCHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCC--SCSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHH T ss_conf 99999999999999999997292407799999997919998863279889999999999999999999865--4299566 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999987518999999998744678588999999999999999997067877877789999999999999998 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFF 162 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (213) .+...+..++++...++..+..++.........................+....+..............+.++..++..+ T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (231) T 2qib_A 87 RLLRVMGRYFDFVDEHGPGFSALMRGGPAVGSTTTNALVDSVRQAAYVQILSHLDVTEPPARLELVVRSWISLAESTALL 166 (231) T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999897999999952855476999999999999999999986278898065999999999999999999 Q ss_pred HHCCCCCCHHHHHHHHHHHHHH Q ss_conf 7359997758999999999999 Q T0596 163 WMRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 163 ~~~~~~~~~~~~~~~l~~~l~~ 184 (213) |+....++..+....+.+.+.. T Consensus 167 ~l~~~~~~~~e~~~~lv~~l~a 188 (231) T 2qib_A 167 WLDGRRIPRAELETQLVHDFAA 188 (231) T ss_dssp HHTTCCSCHHHHHHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHHHHHHH T ss_conf 9708999999999999999999 No 3 >3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} Probab=99.81 E-value=5.2e-17 Score=150.76 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=109.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++.+ T Consensus 10 ~~r~~rr~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (203) T 3f1b_A 10 LPRAVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPRE 89 (203) T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 99999999999999999997293417799999998909889978829999999999999999999999886345899899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999875189999999987446-78588999999999999999997067 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEF-GHIHIQIPAVMRVSRTVQWVREAAQR 138 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (213) .+..++..+++....++..+..++...... ................+......... T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (203) T 3f1b_A 90 QLRRALEGFLGFVGKHRKSWMVLYRQAMGQQAFVGSVQSSRDRLIELTAHLLESSTK 146 (203) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHCC-CCTTTTTHHHHHHHHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999886869999999874268789999999999999999999997442 No 4 >3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp} Probab=99.80 E-value=9.7e-17 Score=148.68 Aligned_cols=182 Identities=10% Similarity=0.092 Sum_probs=126.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |+.+++++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+........++ T Consensus 6 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (202) T 3lwj_A 6 LEKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEKDL 85 (202) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 87668999999999999999871934076999999879088789888599999999999999998788899875124558 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHH Q ss_conf 8899999999999987518999999998744678588-9999999999999999970---67877877789999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHI-QIPAVMRVSRTVQWVREAA---QRDATFMRRALEESTLTTIY 156 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 156 (213) .+.+..++..++.....++.....+............ ...........+...+... +... ..........+..+. T Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~~~~~~~~~ 164 (202) T 3lwj_A 86 YERFIETKRLTMEVFAQNETLSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFK-NVPVSPIAHSILAIE 164 (202) T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH T ss_conf 9999999999999876067999999998606876899999999999999999999999869999-999999999999999 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 999998735999775899999999999 Q T0596 157 LMTFFFWMRDESENSRHTRQFLKRHLT 183 (213) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 183 (213) .+....|..............+...+. T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~ 191 (202) T 3lwj_A 165 KFSLYKWVVLKAITKEEMIEMVLSFHK 191 (202) T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 999999986489999999999999999 No 5 >2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp} Probab=99.79 E-value=1.7e-16 Score=146.83 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=119.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |..+++.+|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++ T Consensus 4 m~k~~~~rre~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (197) T 2f07_A 4 MPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDF 83 (197) T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHHHHHHHHTCCSCCCH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99985769999999999999973914065999999878691157776599999999999999999999999986158999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHH Q ss_conf 88999999999999875189999999987446785889999999999999999970---678778777899999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAA---QRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 157 (213) .+.+..++..++.....++.............................+...+..+ +.-..+........++..+.. T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~a~~i~~~~~ 163 (197) T 2f07_A 84 WTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVE 163 (197) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999999999987918999999870486038999999999999999999999985999999999999999999999 Q ss_pred HHHHHHHC Q ss_conf 99998735 Q T0596 158 MTFFFWMR 165 (213) Q Consensus 158 ~~~~~~~~ 165 (213) +....|.. T Consensus 164 ~~~~~~~~ 171 (197) T 2f07_A 164 NTAERFYI 171 (197) T ss_dssp HHHHHHHT T ss_pred HHHHHHHH T ss_conf 99999984 No 6 >3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii} Probab=99.79 E-value=3.2e-17 Score=152.44 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=116.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) ...+++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++....+...+.........+.. T Consensus 12 ~~~~~~r~rIl~AA~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~ 91 (211) T 3him_A 12 LGTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPD 91 (211) T ss_dssp --CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 46679999999999999998492507799999996899652222389899999999998878999999874100123099 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999874467858--8999999999999999997---0678778777899999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIH--IQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (213) .+...+..++.....++.....+........... ............+...... .+.... .........+..+.. T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~ 170 (211) T 3him_A 92 RLMSTVTAYVTWHADNRASARVGQYELRSLSPEHFAIIADIRRSTTKVFTRIIEAGATAGDFHP-FDIEAAALAITSLGI 170 (211) T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHH T ss_conf 9999999999998737699999998762268889999999999999999999998611589997-799999999999999 Q ss_pred HHHHHHHCCCCCCHHHH Q ss_conf 99998735999775899 Q T0596 158 MTFFFWMRDESENSRHT 174 (213) Q Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (213) ++..++..+...+.... T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (211) T 3him_A 171 DVSRWFPSHTYSDPRII 187 (211) T ss_dssp HHHHHCSCSSCCCHHHH T ss_pred HHHHHHHCCCCCCHHHH T ss_conf 99999864799999999 No 7 >3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} Probab=99.79 E-value=1.1e-17 Score=155.99 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=109.6 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) .+.++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+........+.... T Consensus 7 ~~~erR~~Il~AA~~l~~~~G~~~~t~~~IA~~aGvs~~~~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201) T 3iuv_A 7 HDPERRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGFARVVAAHPALSDPEADL 86 (201) T ss_dssp --CCHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHTTCGGGGCTTSCH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 98799999999999999984913067999999868994519987599999999999999999999999764249979999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999875189999999987446785889999999999999999970678778777899999999999999987 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFFW 163 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (213) +..+...+......+............................+.+...+... .+......+...+.+....+. T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~l~~~~~g~~~~~~ 160 (201) T 3iuv_A 87 SGELARVLGEWLGGDRTGVELEYELYLAALRRPALRPVAAEWAEGVGALLAAR------TDPTTARALVAVLDGICLQVL 160 (201) T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999755567889999998742378999999999999999885446------969999999999999999998 Q ss_pred HCCCCCCHHHHHHHHHHHHHH Q ss_conf 359997758999999999999 Q T0596 164 MRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 164 ~~~~~~~~~~~~~~l~~~l~~ 184 (213) ..+...+.......+.+.+.. T Consensus 161 ~~~~~~~~~~~~~~l~~~l~~ 181 (201) T 3iuv_A 161 LTDTPYDEEYAREVLTRLIPV 181 (201) T ss_dssp HSCCCCCHHHHHHHHHHHSCC T ss_pred HCCCCCCHHHHHHHHHHHHHH T ss_conf 668999999999999999976 No 8 >3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX} Probab=99.78 E-value=4.7e-17 Score=151.10 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=116.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) +.+.+++|++|+++|.++|.++||.++||++||+++|||+++||+||+||++|+.+++++..+.+...+........++. T Consensus 26 ~r~~~~~R~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~yF~sK~~L~~a~~~~~~~~~~~~l~~~~~~~~~~~ 105 (218) T 3dcf_A 26 GRTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPG 105 (218) T ss_dssp ----CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99878899999999999999859351779999999790986886875999999999999999999999999872677718 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHH Q ss_conf 899999999999987518999999998744678--58899999999999999999706787--78777899999999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGH--IHIQIPAVMRVSRTVQWVREAAQRDA--TFMRRALEESTLTTIYL 157 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 157 (213) +.+..++..++.....++.....++........ ............+.+...+..+.... ...........+..+.. T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~d~~~~a~~i~~~~~ 185 (218) T 3dcf_A 106 ERIHALLVEHTRTILRNLDANTLFYNERGLLSPEREREMRKREREYTEIMQRLYAEGVATGELLDVDPTVATATLLGAAI 185 (218) T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999999999878479999999886359899999999999999999999999998699999999999999999999 Q ss_pred HHHHHHHCCCCCCH Q ss_conf 99998735999775 Q T0596 158 MTFFFWMRDESENS 171 (213) Q Consensus 158 ~~~~~~~~~~~~~~ 171 (213) ....++..+...+. T Consensus 186 ~~~~~~~~~~~~~~ 199 (218) T 3dcf_A 186 WTYRWYDPEGRLSA 199 (218) T ss_dssp THHHHCCTTSSSCH T ss_pred HHHHHHCCCCCCCH T ss_conf 99998546899999 No 9 >3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A Probab=99.78 E-value=4.9e-16 Score=143.16 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=112.9 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH Q ss_conf 7178999999999999986484121499999984887778763158988999999999999999887543-201345788 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA-GFLDLVASE 82 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (213) +..+||++|+++|.++|.++||+++||++||++||||+++|||||+||++|+.+++++....+....... ......+.+ T Consensus 11 ~~~~tr~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~yF~~K~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220) T 3lhq_A 11 QALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLS 90 (220) T ss_dssp HSHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 49999999999999999984914077999999858893347761899999999999999999999999998617656159 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHH-HHH---HHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHH Q ss_conf 9999999999998751899999999874467---85889-999---9999999999999---706787787778999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFG---HIHIQ-IPA---VMRVSRTVQWVRE---AAQRDATFMRRALEESTL 152 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (213) .+...+..++.....++.............. ..... ... .......+...+. ..+....+.........+ T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~ 170 (220) T 3lhq_A 91 VLREILVHILEATVTEERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILM 170 (220) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 99999999999985158888899999988874300045799999999999999999999999869999999999999999 Q ss_pred HHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHHH Q ss_conf 99999999987359997-758-999999999999 Q T0596 153 TTIYLMTFFFWMRDESE-NSR-HTRQFLKRHLTM 184 (213) Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~~-~~~~~l~~~l~~ 184 (213) ..+..+.+..|+..+.. +.. ....+++..+.. T Consensus 171 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 204 (220) T 3lhq_A 171 RSFISGLMENWLFAPQSFDLKKEARAYVTILLEM 204 (220) T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999999986899999999999999999987 No 10 >2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Probab=99.78 E-value=1.4e-16 Score=147.53 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=119.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320-134578 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVAS 81 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (213) .+..+||++|+++|.++|.++||+++||++||++||||+++|||||+||++|+.+++++..+.+...+..... ...++. T Consensus 20 ~r~~~tr~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (214) T 2oer_A 20 ARSSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPL 99 (214) T ss_dssp ---CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 23999999999999999997293307799999997909989998849999999999999999999999998752589999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 89999999999998751899999999874467858899999999999999999706787787778999999999999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFF 161 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (213) +.+..++..+++....++.....+.......................+...+..................+..+...... T Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (214) T 2oer_A 100 ERLRRLVLAFVRSECEEAAIRVALSDAAPLYRDADEAREVKAEGARVFQAFLREALPEVAEAERSLAGDLLTTTLGAVGK 179 (214) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999998759299999998512556619999999999999999999871025756799999999999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHH Q ss_conf 873599977589999999999 Q T0596 162 FWMRDESENSRHTRQFLKRHL 182 (213) Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~l 182 (213) ++.. ..........+.+... T Consensus 180 ~~~~-~~~~~~~~~~~~~~l~ 199 (214) T 2oer_A 180 QFSE-QPRSEAEIERYAEALA 199 (214) T ss_dssp HHTT-SCCCHHHHHHHHHHHH T ss_pred HHHH-CCCCHHHHHHHHHHHH T ss_conf 9972-8898204999999999 No 11 >3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} Probab=99.77 E-value=2.4e-16 Score=145.64 Aligned_cols=180 Identities=14% Similarity=0.077 Sum_probs=121.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+..++|++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.+++++..+.+...+... ...++.+ T Consensus 10 r~~~~~r~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~l~~~--~~~~~~~ 87 (199) T 3crj_A 10 RTFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDV--ETTDPEA 87 (199) T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHTC--CCCCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHH T ss_conf 98788999999999999997292407899999997919999988858999999999999999989999987--5289999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHH---HHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHH Q ss_conf 9999999999998751899999999874467-8588999---999999999999997---06787787778999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFG-HIHIQIP---AVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTI 155 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 155 (213) .+..++..++.....++.....++....... .+..... ........+...+.. .+.. .+.........+..+ T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~a~~l~~~ 166 (199) T 3crj_A 88 RLNLLLDELLVKPQENPDLSVALLEMRSQAPYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVF-TDVDAEHVTRSLLTI 166 (199) T ss_dssp HHHHHHHHHHTGGGGCHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHH T ss_conf 9999999999999869299999999986276888999999999999999999999999986999-999999999999999 Q ss_pred HHHHHHHH-HCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999987-3599977589999999999999 Q T0596 156 YLMTFFFW-MRDESENSRHTRQFLKRHLTMA 185 (213) Q Consensus 156 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~ 185 (213) ..+....| ..+...........+.+.++.. T Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (199) T 3crj_A 167 IDGARTRAVMLDDTEELETARQTASEYADAM 197 (199) T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999987599667999999999999986 No 12 >2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.77 E-value=4.5e-17 Score=151.26 Aligned_cols=194 Identities=10% Similarity=0.001 Sum_probs=117.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+..++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++....+...+..... ..++.+ T Consensus 5 ~~~~~t~e~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~~K~~Ll~~~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (203) T 2np5_A 5 RYSSTSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSEVER-GGDPAR 83 (203) T ss_dssp ----CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTSCC-TTCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHH T ss_conf 7750799999999999999739140879999998690898885047989999999999999999999998752-798799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999987518999999998744678588999999999999999997067877877789999999999999998 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFF 162 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (213) .+...+..++.....++.............................+...+..................+..+..+.... T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~gl~~~ 163 (203) T 2np5_A 84 ALFAAMSQLLPLDEARSREAHVMAAFAVRAATSPSLAEIRRKTLFTIRTGLSAVLIGIGTPEAETRAALLLATVDGLALD 163 (203) T ss_dssp HHHHHHHTTSCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999988581476999999985358999999999999999999999987668999999999999999999999 Q ss_pred HHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 7359-99775899999999999999887763278886567 Q T0596 163 WMRD-ESENSRHTRQFLKRHLTMAAWLGQKVYGKDPEKST 201 (213) Q Consensus 163 ~~~~-~~~~~~~~~~~l~~~l~~~~~l~~~~~~~~p~~~~ 201 (213) |... ...+.... ++.+...........+..|..++ T Consensus 164 ~~~~~~~~~~e~~----~~~l~~~l~~~l~g~~~~p~~~~ 199 (203) T 2np5_A 164 AIGSPALYPPEYL----EHALDIQIGMILQGADVVPSSSI 199 (203) T ss_dssp HHHCGGGSCHHHH----HHHHHHHHHHHTTTSSCCC---- T ss_pred HHHCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9768688999999----99999999999647889999987 No 13 >3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* Probab=99.77 E-value=2.5e-16 Score=145.48 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=117.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320--13457 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF--LDLVA 80 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~--~~~~~ 80 (213) .+.++||++||++|.++|.++||+++|+++||+++||++++||+||+||++|+.++++.+.+.+...+..... ...++ T Consensus 40 ~~~~~rR~~IL~AA~~lf~~~G~~~~Tv~~IA~~AGVsk~tlY~~F~sKe~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (256) T 3g1l_A 40 PSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDR 119 (256) T ss_dssp --CTHHHHHHHHHHHHHTTTSCGGGCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 99889999999999999998392316299999997909988836768889999999999999999999998727677889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHH Q ss_conf 88999999999999875189999999987446785-88999999999999999997---067877877789999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHI-HIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIY 156 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (213) ...+..++..+++....++..+..+.......... ...........+.+...+.. .+....+.........+..+. T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~~~~~~~~~~a~~l~~~~ 199 (256) T 3g1l_A 120 ENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMN 199 (256) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999999999999986829999999985169999999999999999999999999998599999999999999999999 Q ss_pred HHHHH-HHHCCC-CCCHHHHHHHHHHHHHH Q ss_conf 99999-873599-97758999999999999 Q T0596 157 LMTFF-FWMRDE-SENSRHTRQFLKRHLTM 184 (213) Q Consensus 157 ~~~~~-~~~~~~-~~~~~~~~~~l~~~l~~ 184 (213) ...+. .|.... ..+.......+.+.+.. T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 229 (256) T 3g1l_A 200 ERTLFASFAGEQPSVPEARVLDTLVHIWVT 229 (256) T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 999999984589899999999999999999 No 14 >2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} Probab=99.77 E-value=5.5e-17 Score=150.61 Aligned_cols=163 Identities=11% Similarity=0.104 Sum_probs=114.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) ..+.++||++||++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++. T Consensus 25 ~~r~~~tr~~IL~aA~~lf~~~G~~~~s~~~IA~~agVs~~t~Y~hF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 104 (230) T 2iai_A 25 AKRDTYTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELFGILDEEHARVGTAA 104 (230) T ss_dssp CC----CCSCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHTTSHHHHSSCHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 66867999999999999999859263719999998582831253068999999999999999999999999985212089 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 899999999999987518999999998744678588999999999999999997---06787787778999999999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIYLM 158 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (213) +.+..++..+++....++.....+.......................+..++.. .|.-..+........++.++..+ T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~d~d~~~~~~~l~~~l~~ 184 (230) T 2iai_A 105 ERLEYVVRRMVEVLMAELPYVTLLLRVRGNTGTERWALERRREFDHRVAALLKDAAAEGDVRADVEVRLATRLVFGMINS 184 (230) T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSSSCHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999999999869499899999752674479999999999999999999999859999999999999999999999 Q ss_pred HHHHHHC Q ss_conf 9998735 Q T0596 159 TFFFWMR 165 (213) Q Consensus 159 ~~~~~~~ 165 (213) +.. |.+ T Consensus 185 ~~~-w~~ 190 (230) T 2iai_A 185 IVE-WYR 190 (230) T ss_dssp HHH-HCC T ss_pred HHH-HHC T ss_conf 999-953 No 15 >3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} Probab=99.77 E-value=4.3e-17 Score=151.41 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=87.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|++||.++|.++||+++||++||+++||++|+|||||+||++|+.++++.+.+.+...+.........+.. T Consensus 31 ~~~~~tR~~Il~AA~~l~~e~G~~~~T~~~IA~~aGvs~gt~Y~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~ 110 (221) T 3g7r_A 31 RTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAADG 110 (221) T ss_dssp ---CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 88299999999999999998492407899999997919889987758799999999999999999999998715887079 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899 Q T0596 83 RIHHLIMIWLDALAVQRKV 101 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (213) .+...+..+......+... T Consensus 111 ~~~~~~~~~~~~~~~~~~~ 129 (221) T 3g7r_A 111 QVRAVARSIVDGIRSPGFR 129 (221) T ss_dssp HHHHHHHHHHHHHTSTTCC T ss_pred HHHHHHHHHHHHHHCCCCC T ss_conf 9999999999997376301 No 16 >2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=99.77 E-value=1e-16 Score=148.45 Aligned_cols=177 Identities=12% Similarity=0.037 Sum_probs=119.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) +.++++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+...+........++.+ T Consensus 3 m~r~~rr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (197) T 2gen_A 3 MGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEE 82 (197) T ss_dssp -----CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 98488999999999999997592517699999997909989977839869999999999999999888987613335069 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHH Q ss_conf 99999999999987518999999998744---678588999999999999999997---067877877789999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLE---FGHIHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIY 156 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (213) .+..++..++++...++.....++..... .................+...+.. .+... ..+.......+.++. T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~~~~~ 161 (197) T 2gen_A 83 TVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR-EMPDDCFASVVIGPA 161 (197) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBC-CCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH T ss_conf 9999999999999989699999999623246867999999999999999999999999869999-999999999999999 Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHH Q ss_conf 99999873599-9775899999999 Q T0596 157 LMTFFFWMRDE-SENSRHTRQFLKR 180 (213) Q Consensus 157 ~~~~~~~~~~~-~~~~~~~~~~l~~ 180 (213) .+....|+... ..+.......+.+ T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (197) T 2gen_A 162 HDLARQWLAGRTRVALADCRELLAQ 186 (197) T ss_dssp HHHHHHHHTTCCSSCGGGGHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 9999999837999999999999999 No 17 >1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=99.77 E-value=2e-16 Score=146.24 Aligned_cols=171 Identities=15% Similarity=0.202 Sum_probs=119.1 Q ss_pred CCCCHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999717-8999999999999986484121499999984887778763158988999999999999999887543201345 Q T0596 1 MTINND-PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLV 79 (213) Q Consensus 1 ~t~~~~-~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (213) ||.++. ++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++.+..+.+...+........+ T Consensus 1 m~~~~~~~~~~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (206) T 1vi0_A 1 MSLKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKAT 80 (206) T ss_dssp -------CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCS T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 99764489999999999999998393407799999995988757986089879999999998877999988876412201 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHH Q ss_conf 78899999999999987518999999998744678588999---999999999999997---067877877789999999 Q T0596 80 ASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIP---AVMRVSRTVQWVREA---AQRDATFMRRALEESTLT 153 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 153 (213) +.+.+..++..++.....++.......... ....+..... ........+...+.. .|.-..+.........+. T Consensus 81 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~~~~~~~a~~i~ 159 (206) T 1vi0_A 81 AKEKLALVISKHFSLLAGDHNLAIVTQLEL-RQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIF 159 (206) T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHTTT-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 268999999999999986800899999987-3167788888888999998999999999998599886342999999999 Q ss_pred HHHHHHHHHHHCCC-CCCHH Q ss_conf 99999999873599-97758 Q T0596 154 TIYLMTFFFWMRDE-SENSR 172 (213) Q Consensus 154 ~~~~~~~~~~~~~~-~~~~~ 172 (213) ++..+....|+... ..+.. T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (206) T 1vi0_A 160 GTIDETVTTWVMNDQKYDLV 179 (206) T ss_dssp HHHHHHHHHHHHTTTCSCGG T ss_pred HHHHHHHHHHHHCCCCCCHH T ss_conf 99999999998568999999 No 18 >2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 Probab=99.76 E-value=6.9e-16 Score=142.00 Aligned_cols=181 Identities=11% Similarity=0.050 Sum_probs=116.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++....+...+........++.+ T Consensus 8 ~~~~~tr~~Il~AA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (200) T 2hyj_A 8 AEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEPPGLR 87 (200) T ss_dssp CTHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTGGGGGSCTTHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 55999999999999999997494647899999987819788956647999999999999999999999998752998788 Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCC-H-HHHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHH Q ss_conf 9999999999998751899----9999998744678-5-8899999999999999999---7067877877789999999 Q T0596 83 RIHHLIMIWLDALAVQRKV----TRQMIMSKLEFGH-I-HIQIPAVMRVSRTVQWVRE---AAQRDATFMRRALEESTLT 153 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 153 (213) .+...+..++.....+... +............ . .............+...+. ..+....+.........+. T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~a~~~~ 167 (200) T 2hyj_A 88 RLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVEQALFEIV 167 (200) T ss_dssp HHHHHHHHHHHHHHSCSSTTSCHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 99999999999996141234369999998752599999999999999999999999999998599999999999999999 Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999987-35999775899999999999 Q T0596 154 TIYLMTFFFW-MRDESENSRHTRQFLKRHLT 183 (213) Q Consensus 154 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ 183 (213) .+..+....+ ..+...........+++.+. T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~lLa 198 (200) T 2hyj_A 168 AAGLALNAAMQLQHDRTAADRARRAIERALA 198 (200) T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9999999999870996279999999999985 No 19 >2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} Probab=99.76 E-value=6.6e-17 Score=149.95 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=96.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .++.+||++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+++...+........++.+ T Consensus 10 ~~~~~rr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204) T 2ibd_A 10 SGKSGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRA 89 (204) T ss_dssp -CHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH T ss_conf 56479999999999999997390306799999986899561567479999999999999999999999998620200489 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999874 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKL 110 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (213) .+..++..++.....++.....+..... T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (204) T 2ibd_A 90 TLEALVTTSYEAIDASHSAVAIYQDEVK 117 (204) T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHTCG T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 9999999999999859589999999988 No 20 >2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} Probab=99.76 E-value=2.4e-16 Score=145.60 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=83.7 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) ++.+||++|+++|.++|.++||+++|+++||++||||+++||+||+||++|+.+++++..+.+...+.........+.+. T Consensus 6 ~~~~rR~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~y~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (193) T 2dg8_A 6 TDPQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGAAADRDEA 85 (193) T ss_dssp -CTTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 98799999999999999972904067999999989099999766389999999999999999999998873348998999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999875189999999 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMI 106 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ 106 (213) +..+...........+....... T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ 108 (193) T 2dg8_A 86 REAVADLVHELSEDSQRDLVLTQ 108 (193) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999984226689999 No 21 >1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A* Probab=99.76 E-value=1.3e-15 Score=139.77 Aligned_cols=179 Identities=13% Similarity=0.098 Sum_probs=114.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH Q ss_conf 717899999999999998648412149999998488777876315898899999999999999988754320--134578 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF--LDLVAS 81 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~--~~~~~~ 81 (213) +.+++|++|++||.++|.++||+++||++||+++||++++|||||+||++|+.+++++..+.+...+..... ...++. T Consensus 21 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216) T 1t56_A 21 SGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRE 100 (216) T ss_dssp -CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 88899999999999999970944077999999968586666035898789999999999999999999987356764289 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHH Q ss_conf 89999999999998751899999999874467858-8999999999999999997---0678778777899999999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIH-IQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (213) +.+..++..+++....++..+..+........... ............+...+.. .+..............+..+.. T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 180 (216) T 1t56_A 101 NMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNE 180 (216) T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999999999868499999998713688999999999999999999999999983999998999999999999999 Q ss_pred HHH-HHHHCCCC-CCHHHHHHHHHHHH Q ss_conf 999-98735999-77589999999999 Q T0596 158 MTF-FFWMRDES-ENSRHTRQFLKRHL 182 (213) Q Consensus 158 ~~~-~~~~~~~~-~~~~~~~~~l~~~l 182 (213) +.+ ..+..... .+.......+.+.+ T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (216) T 1t56_A 181 RTLFASFAGEQPSVPEARVLDTLVHIW 207 (216) T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 999999744888888999999999999 No 22 >2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} Probab=99.76 E-value=5.6e-16 Score=142.70 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=112.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320-134578 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVAS 81 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (213) ++.++||++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+......... ....+. T Consensus 7 ~~~~~tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (219) T 2w53_A 7 EDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPV 86 (219) T ss_dssp CGGGCCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 15999999999999999998592407799999984889542553289999999989999999999987530025554508 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHH Q ss_conf 89999999999998751899999999874467------858899999999999999999---706787787778999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFG------HIHIQIPAVMRVSRTVQWVRE---AAQRDATFMRRALEESTL 152 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (213) +.+...+..++.....++.............. ...............+...+. ..|.-..+.........+ T Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~ 166 (219) T 2w53_A 87 HDLRAVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARML 166 (219) T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 99999999999999868788899999999851127599999999999999999999999999859999999999999999 Q ss_pred HHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHH Q ss_conf 99999999987359997-75-89999999999 Q T0596 153 TTIYLMTFFFWMRDESE-NS-RHTRQFLKRHL 182 (213) Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~l 182 (213) ..+..+....|+..+.. +. ......++..+ T Consensus 167 ~~~~~g~~~~~~~~~~~~d~~~~~~~~~~~~l 198 (219) T 2w53_A 167 HATVLGVLHGAMVEPELMDLKRDGMLALDMTL 198 (219) T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 99999999999868886899999999999999 No 23 >3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} Probab=99.75 E-value=6.3e-16 Score=142.30 Aligned_cols=187 Identities=11% Similarity=0.006 Sum_probs=110.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320-134578 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVAS 81 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (213) .+++++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+..... ...++. T Consensus 10 ~~~e~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (215) T 3e7q_A 10 LEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGAR 89 (215) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 89999999999999999997393407799999997948888988859999999999999999999999887632788678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH---HHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHH Q ss_conf 899999999999987518999999998744-6785889---99999999999999997---0678778777899999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLE-FGHIHIQ---IPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTT 154 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 154 (213) ......+...+.....++............ ....... ..........+...+.. .+... +.........+.. T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l~~ 168 (215) T 3e7q_A 90 PRLSAFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWA-DFDAELAAISLSA 168 (215) T ss_dssp HHHHHHHHHHTSHHHHCGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHH T ss_conf 889999999999887441577899999997047888999999999999999999999998768999-9889999999999 Q ss_pred HHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999-9987359997758999999999999998877 Q T0596 155 IYLMT-FFFWMRDESENSRHTRQFLKRHLTMAAWLGQ 190 (213) Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~ 190 (213) +..+. +.+++.....+.......++..+........ T Consensus 169 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 205 (215) T 3e7q_A 169 LLDGLWLESGLNPATFTPRQGVQICEAWVDGLEAGAH 205 (215) T ss_dssp HHHHHHHHHHHCTTSSCHHHHHHHHHHHHHHHHTTGG T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999997578999999999999999999730867 No 24 >3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} Probab=99.75 E-value=1.2e-16 Score=148.00 Aligned_cols=180 Identities=14% Similarity=0.146 Sum_probs=121.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) +.++.++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+...+........++. T Consensus 17 ~~~~~~~r~~Il~aA~~l~~~~G~~~~si~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (207) T 3bjb_A 17 SEEQRARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMGVGFKKSAPPGESPQ 96 (207) T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC----------CSHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 83379999999999999999739030779999999890998997757999999999999999999999998733699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 899999999999987518999999998744678588999999999999999997-0678778777899999999999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREA-AQRDATFMRRALEESTLTTIYLMTF 160 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (213) +.+..++..+++....++.....++........... .........+...+.. .+..............+..++.+.+ T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (207) T 3bjb_A 97 DAVYNVLVRATRGLLRRPALSTAMIQSTSTANVASV--PDAGKVDRAFRQIMLDAAGIEHPTEEDLTALRLLVQLWFGVI 174 (207) T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHCCTTTC--GGGGGHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999999998795999999972024573468--999999999999999985556898665999999999999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 987359997758999999999999 Q T0596 161 FFWMRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~l~~ 184 (213) ..|+... .+.......+++.+.. T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~~~ 197 (207) T 3bjb_A 175 QSCLNGR-VSIPDAESDIRRACDL 197 (207) T ss_dssp HHHHTTS-SCHHHHHHHHHHHHHH T ss_pred HHHHHCC-CCCHHHHHHHHHHHHH T ss_conf 9998279-9802299999999999 No 25 >3kz9_A SMCR; transcriptional regulator, quorum sensing, DNA-binding, transcription regulation, transcription regulator; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A Probab=99.75 E-value=6.4e-16 Score=142.23 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=118.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++.+ T Consensus 13 ~~~~~rr~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (206) T 3kz9_A 13 LSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKE 92 (206) T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 98899999999999999997192205699999987869131156339999999999999999999999998605999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999987518999999998744678--588999999999999999997---0678778777899999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGH--IHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (213) .+..++..+++....++.....++........ ..............+...+.. .+..............+..+.. T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (206) T 3kz9_A 93 NIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPEDLANLFHGICY 172 (206) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTCCCTTTHHHHHHHTHHHHHHHHHHHHHHHHTTSBCTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999999998794999999998760689999999999999999999999999985999999989999999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 999987359997758999999999 Q T0596 158 MTFFFWMRDESENSRHTRQFLKRH 181 (213) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~ 181 (213) +....|... ++.......++.. T Consensus 173 ~~~~~~~~~--~~~~~~~~~~~~~ 194 (206) T 3kz9_A 173 SLFVQANRT--NNTAELSKLVSSY 194 (206) T ss_dssp HHHHHHTTC--CCHHHHHHHHHHH T ss_pred HHHHHHCCC--CCHHHHHHHHHHH T ss_conf 999982157--9999999999999 No 26 >3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} Probab=99.75 E-value=8.2e-16 Score=141.42 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=82.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) +.+.+||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++++.+++...+.........+.+ T Consensus 4 ~~~a~tR~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (194) T 3dpj_A 4 MVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGDSPRA 83 (194) T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 32999999999999999997492518899999985849566875468999999999999999999999987726750688 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999875189 Q T0596 83 RIHHLIMIWLDALAVQRK 100 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~ 100 (213) .+...+..++......+. T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (194) T 3dpj_A 84 RIASFIDLMIMNRAKITR 101 (194) T ss_dssp HHHHHHHHHHHTHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999998751046 No 27 >3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} Probab=99.75 E-value=7.9e-16 Score=141.53 Aligned_cols=165 Identities=12% Similarity=0.058 Sum_probs=111.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH Q ss_conf 997178999999999999986484121499999984887778763158988999999999999999887543201--345 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFL--DLV 79 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~--~~~ 79 (213) +.+++++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+...... ... T Consensus 7 ~~~~~~~R~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (198) T 3cjd_A 7 EARKAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEVNGRTFARLGAAVGAVVADGQDDH 86 (198) T ss_dssp ---CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHC-------CCC T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 00699999999999999999829331329999998588955002416987889999999999999999999875078730 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 7889999999999998751899999999874467--85889999999999999999970678778777899999999999 Q T0596 80 ASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFG--HIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (213) ...........+......++..+...+....... ...............+...+..................+..+.. T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198) T 3cjd_A 87 PNERLIAMSHAYLAFAREHPKLWRALFDVEMRSDGPVPQWYGHAMAQLFSYITTPLAKIFPESDDAELDLMTRTLFSSVH 166 (198) T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHHHHSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 36999999999999998687999999984414661149999999999999999999986325896689999999999999 Q ss_pred HHHHHHHCC Q ss_conf 999987359 Q T0596 158 MTFFFWMRD 166 (213) Q Consensus 158 ~~~~~~~~~ 166 (213) +....|... T Consensus 167 g~~~~~~~~ 175 (198) T 3cjd_A 167 GIVLLGLEN 175 (198) T ss_dssp HHHHHHHTT T ss_pred HHHHHHHHC T ss_conf 999999737 No 28 >3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} Probab=99.75 E-value=2.5e-16 Score=145.39 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=85.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.++||++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++....+...+........++.+ T Consensus 10 ~k~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (212) T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARD 89 (212) T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 55499999999999999987095528899999997909999988858999999999999999999999999843799899 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999987518 Q T0596 83 RIHHLIMIWLDALAVQR 99 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (213) .+..++..++.....+. T Consensus 90 ~l~~~~~~~~~~~~~~~ 106 (212) T 3knw_A 90 KLMNYLQCWVKDPATEQ 106 (212) T ss_dssp HHHHHHHHHHHC----- T ss_pred HHHHHHHHHHHHHHHCH T ss_conf 99999999999885242 No 29 >2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.74 E-value=4.9e-16 Score=143.15 Aligned_cols=184 Identities=13% Similarity=0.047 Sum_probs=116.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999999999986484121499999984887778763158988999999999999999887543201345788999 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIH 85 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (213) .++|++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.++++.....+...+........++.+.+. T Consensus 2 ~err~~Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (208) T 2g3b_A 2 SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGDSARDRLT 81 (208) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC-CCSHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 48999999999999997490306799999996919999987748999999999999998899999987526998899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH-HCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 999999999875189999999---987-44678588999999999999999997---06787787778999999999999 Q T0596 86 HLIMIWLDALAVQRKVTRQMI---MSK-LEFGHIHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTIYLM 158 (213) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (213) ..+...+.....+......+. ... ..+................+...+.. .|.-..+.........+..+..+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~l~~~~~g 161 (208) T 2g3b_A 82 RSLLGEIQDRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEG 161 (208) T ss_dssp HHHHHTSCSSHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999724014777999999975347889999999999999999999999999859999999999999999999999 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99987359997758999999999999998877 Q T0596 159 TFFFWMRDESENSRHTRQFLKRHLTMAAWLGQ 190 (213) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~ 190 (213) ....|+... .+.......+...++....... T Consensus 162 l~~~~l~~~-~~~~~~~~~~~~~i~~~l~~~~ 192 (208) T 2g3b_A 162 LSGRWLCKE-ISTEDARSHLLGAIDVVMSEPT 192 (208) T ss_dssp HHHHHHTTS-SCHHHHHHHHHHHHHHHHC--- T ss_pred HHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCC T ss_conf 999996289-9878999999999999985645 No 30 >2hyt_A TETR-family transcriptional regulator; YP_049917.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.64A {Pectobacterium atrosepticum} Probab=99.74 E-value=1e-15 Score=140.73 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=107.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 17899999999999998648412149999998488777876315898899999999999999988754320134578899 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERI 84 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213) .++||++|++||.++|.++||+++||++||++||||++|||+||+||++|+.+++++....+...+........++.+.+ T Consensus 10 ~~~tR~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (197) T 2hyt_A 10 MEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISDTAEDDWEGF 89 (197) T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 99999999999999999869151779999998383923064509899999999999999998999998870389989999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999987518999999998--744678588999999999999999997067877877789999999999999998 Q T0596 85 HHLIMIWLDALAVQRKVTRQMIMS--KLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFF 162 (213) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (213) ..++..+++....+......+... ................+.+.+....+. +... ..........+.++......+ T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~a~~~~~~~~~~~~~ 167 (197) T 2hyt_A 90 RCRCRAYLEMALEPEIQRIVLRDARAVLGGASPDSQRHCVESMQRLIDNLIRQ-GVVA-EADPQALASLIYGSLAEAAFW 167 (197) T ss_dssp HHHHHHHHHGGGSHHHHHHTTTHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHT-TSBC-SCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC-CCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999998485699999987065310533899999999999999999985-9999-999999999999999999999 Q ss_pred HHCC Q ss_conf 7359 Q T0596 163 WMRD 166 (213) Q Consensus 163 ~~~~ 166 (213) +... T Consensus 168 ~~~~ 171 (197) T 2hyt_A 168 IAEG 171 (197) T ss_dssp HHHC T ss_pred HHHC T ss_conf 8717 No 31 >3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} Probab=99.74 E-value=1.1e-16 Score=148.17 Aligned_cols=178 Identities=12% Similarity=0.001 Sum_probs=112.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) |+.+..+|++||++|.++|.++|| ++||++||+++|||+++|||||+||++|+.+++++..+.+...+........++. T Consensus 4 ~~~~~~~R~~Il~aA~~l~~~~G~-~~t~~~IA~~aGvs~~~iy~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190) T 3jsj_A 4 TEVKQSPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPR 82 (190) T ss_dssp ---CCCHHHHHHHHHHHHHHHHCT-TCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 877641999999999999997698-8829999999790999998882999999999999999999999999874167557 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 89999999999998751899999999874--4678588999---999999999999997067877877789999999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKL--EFGHIHIQIP---AVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIY 156 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (213) ..+..++..+.............+..... .......... ........+.......+ ...+......+..++ T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~l~~l~ 158 (190) T 3jsj_A 83 ERILYVFERVESQAGAPDFQGCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAERGG----ASDPDLLARQLILVF 158 (190) T ss_dssp HHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHHHTT----CSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHH T ss_conf 8889999999999715430104999998762567889999999999999999999998839----999999999999999 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999987359997758999999999999 Q T0596 157 LMTFFFWMRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 184 (213) .+....+.....+........+++.++. T Consensus 159 ~G~~~~~~~~~d~~~~~~~~~~~~llda 186 (190) T 3jsj_A 159 DGASARAGIGADNLTGLIVPTLTTLLDA 186 (190) T ss_dssp HHHHHHHHTTSCCCTTTHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 9999998774995479999999999996 No 32 >2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1 Probab=99.74 E-value=3.1e-16 Score=144.67 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=71.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345--- Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLV--- 79 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~--- 79 (213) +-++|||++||++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+......... T Consensus 3 ~~~~etre~IldaA~~lf~~~G~~~~s~~~IA~~agvs~~~lY~~F~sK~~L~~av~~~~~~~~~~~~~~~l~~~~~~~~ 82 (235) T 2fbq_A 3 MAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPE 82 (235) T ss_dssp -CHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 98389999999999999998592407799999997939889999859999999999999999999999999862779655 Q ss_pred -HHHHHHHHHHHHHH Q ss_conf -78899999999999 Q T0596 80 -ASERIHHLIMIWLD 93 (213) Q Consensus 80 -~~~~~~~~~~~~~~ 93 (213) +...+..++..+++ T Consensus 83 ~~~~~~~~~l~~~~~ 97 (235) T 2fbq_A 83 AQHATLEDLLHLLVS 97 (235) T ss_dssp CCCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 666589999999999 No 33 >3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} Probab=99.74 E-value=4.6e-16 Score=143.36 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=105.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+........++.+ T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~yF~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (203) T 3ccy_A 10 ADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKT 89 (203) T ss_dssp --CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 88899999999999999997494528899999987909878867679999999999999999999999987513898999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999875189999999987446785--8899999999999999999706787 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHI--HIQIPAVMRVSRTVQWVREAAQRDA 140 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (213) .+...+..++.....++................ .............+...+.....+. T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (203) T 3ccy_A 90 RFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDM 149 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHCGGG T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999885809999999998857988899999999999999999999985357 No 34 >3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} Probab=99.74 E-value=4.2e-16 Score=143.67 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=90.7 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) .+.+||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+.. .........++.+. T Consensus 5 ~r~~tR~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (206) T 3dew_A 5 TRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQ-LDDIRGQAGDPLAV 83 (206) T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHGGGGC-CHHHHTTTTCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHH T ss_conf 78999999999999999985925288999999959499999888489999998778999999888-88751000047999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999875189999999987446 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLEF 112 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (213) +..++..+++....++.....+....... T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (206) T 3dew_A 84 MTAYLRWTIQRHRNNPQLLRFYTSELTNP 112 (206) T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999987579999999988537 No 35 >1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=99.74 E-value=3.5e-16 Score=144.28 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=93.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |+.++..||++|+++|.++|.++||+++||++||++||||++|||+||+||++|+.+++++..+.+.+.+.... ...++ T Consensus 2 m~~r~~~tre~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~l~~~~-~~~~~ 80 (183) T 1zk8_A 2 MSPRIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEAA-EDKRM 80 (183) T ss_dssp ----CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCH T ss_conf 79982638999999999999970944057999999858894303322898788999999999999999999874-00577 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999987518999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQM 105 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (213) .+.+..++..++++...++..+... T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (183) T 1zk8_A 81 DEAIHALGEAYVAFVRKHPGLYEAT 105 (183) T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHH T ss_conf 9999999998999999898999999 No 36 >3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} Probab=99.73 E-value=5.4e-16 Score=142.85 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=86.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) ..+.+++|++|++||.++|.++||+++||++||++||||+|+|||||+||++|+.+++++..+.+...+........++. T Consensus 6 ~~~~e~~re~Il~aA~~lf~e~G~~~~s~~~IA~~agvs~~tlY~hF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (216) T 3f0c_A 6 IKNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDAT 85 (216) T ss_dssp ----CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 44716899999999999999749040789999998791987897775999999999999999999999999984699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999987518999 Q T0596 82 ERIHHLIMIWLDALAVQRKVT 102 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (213) +.+..++..+.......+... T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~ 106 (216) T 3f0c_A 86 ALLKKYVKLRSLHFRHLLNLS 106 (216) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999837689 No 37 >2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.73 E-value=6.4e-16 Score=142.25 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=88.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+..++|++|+++|.++|.++|| ++||++||++||||+++|||||+||++|+.+++++....+...+........++.+ T Consensus 16 ~~~~~tr~~Il~aA~~lf~e~G~-~~s~~~IA~~Agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (215) T 2hku_A 16 ESGRQTRDALFTAATELFLEHGE-GVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDAATAETVGD 94 (215) T ss_dssp ----CHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 88899999999999999998587-78699999986504236888659999999999999999999998761277899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .+..++..+++....+...+..... T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (215) T 2hku_A 95 YTEKLVGSLLGPGAPSVELFTSAML 119 (215) T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999997025403699999999 No 38 >2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1 Probab=99.73 E-value=9.6e-16 Score=140.88 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=85.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) ..++++||++|+++|.++|.++||+++|+++||+++|||+++||+||+||++|+.+++++....+............++. T Consensus 3 ~~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (194) T 2g7s_A 3 MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPL 82 (194) T ss_dssp --CHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 99838999999999999999749251879999998790999884760899999999999999999999999861599989 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999875189 Q T0596 82 ERIHHLIMIWLDALAVQRK 100 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (213) +.+..++..+......... T Consensus 83 ~~l~~~~~~~~~~~~~~~~ 101 (194) T 2g7s_A 83 EQLRAYIGYWEGCIADATH 101 (194) T ss_dssp HHHHHHHHHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHHHCCCH T ss_conf 9999999999999762411 No 39 >2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} Probab=99.73 E-value=1.1e-16 Score=148.09 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=117.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |+.+..++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+.... ...++ T Consensus 11 ~~~~~~~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~-~~~~~ 89 (207) T 2rae_A 11 IGRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGDFDAHLAEMRAQLAAQP-DDIPI 89 (207) T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSHHHHHHHHHHHHHHSC-TTSCH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCH T ss_conf 87884889999999999999972903067999999979199899888799999999999999999999998632-48999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8899999999999987518999999998744678-588999999999999999997-06787787778999999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGH-IHIQIPAVMRVSRTVQWVREA-AQRDATFMRRALEESTLTTIYLM 158 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (213) .+.+..++..+++....++.....+......... ..............+...+.. .+....+.........+..+... T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (207) T 2rae_A 90 VDGLTAALLQFNAFPASEEINHRKRMGLILRVPALQAYSVVMYEGWRNVIAEYVASRLGTSPTDHVPRTVGYLLLGVAMS 169 (207) T ss_dssp HHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999999998861307999999987458878999999999999999999998649998864599999999999999 Q ss_pred HHHHHHCCCCCCHHHH Q ss_conf 9998735999775899 Q T0596 159 TFFFWMRDESENSRHT 174 (213) Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (213) ....|..++..+.... T Consensus 170 ~~~~~~~~~~~~~~~~ 185 (207) T 2rae_A 170 AYEQWLDDDSLELNEL 185 (207) T ss_dssp HHHHHHHCTTSCHHHH T ss_pred HHHHHHHCCCCCHHHH T ss_conf 9999974799999999 No 40 >3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} Probab=99.73 E-value=2.7e-15 Score=137.36 Aligned_cols=191 Identities=10% Similarity=0.048 Sum_probs=108.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH Q ss_conf 971789999999999999864841214999999848877787631589889999999999999998875432---01345 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG---FLDLV 79 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~---~~~~~ 79 (213) .+..++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+........ ....+ T Consensus 8 ~r~~~~r~~Il~aA~~lf~~~G~~~~si~~IA~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (211) T 3bhq_A 8 TRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDIIESVTTLLSEAIF 87 (211) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 88199999999999999998493518899999984889330666389889999999999999999999988751476425 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHHHHHHHHH---CCCCCCCCHHHHHHHH Q ss_conf 7889999999999998751899999999874467858899999----99999999999970---6787787778999999 Q T0596 80 ASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAV----MRVSRTVQWVREAA---QRDATFMRRALEESTL 152 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 152 (213) +...+...+..........................+....... ......+...+... +.-....+......++ T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~a~~l~ 167 (211) T 3bhq_A 88 MEGGLQQLARRLIAVLMDEELLKLRRLIIANADRMPQLGRAWYEKGFERMLASTASCFQKLTNRGLIQTGDPYLAASHLF 167 (211) T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSBCCSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 99999999999999860617789999999976108399999999999999999999999999869999999999999999 Q ss_pred HHHHHHHHHH-HH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999998-73-599977589999999999999988776327888 Q T0596 153 TTIYLMTFFF-WM-RDESENSRHTRQFLKRHLTMAAWLGQKVYGKDP 197 (213) Q Consensus 153 ~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~~p 197 (213) ..+.+....+ +. .....+.......++..++.. -+..|..| T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f----L~~~g~~P 210 (211) T 3bhq_A 168 GMLLWIPMNEAMFTGSNRRSKAELERHADASVEAF----LAVYGVQP 210 (211) T ss_dssp HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHBC-- T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH----HHHCCCCC T ss_conf 99999999999856888999999999999999999----99808999 No 41 >1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A Probab=99.73 E-value=7.7e-16 Score=141.63 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=86.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.++||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++...+.+...+........++.+ T Consensus 5 ~r~~~tr~~Il~aa~~l~~~~G~~~~si~~IA~~agvS~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (215) T 1ui5_A 5 LRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLE 84 (215) T ss_dssp CCTTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 52899999999999999998494528899999986889450865199999999988999999999999976246899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999987518999 Q T0596 83 RIHHLIMIWLDALAVQRKVT 102 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ 102 (213) .+..++..+.+....++... T Consensus 85 ~l~~~~~~~~~~~~~~~~~~ 104 (215) T 1ui5_A 85 ALMRLTFGMARLCVQGPVLR 104 (215) T ss_dssp HHHHHHHHHHHHHHHCHHHH T ss_pred HHHHHHHHHHHHHHCCHHHH T ss_conf 99999999999984056999 No 42 >2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} Probab=99.72 E-value=1.4e-16 Score=147.54 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=107.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201--3457 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFL--DLVA 80 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~--~~~~ 80 (213) .++.++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+...+...... .... T Consensus 24 ar~~erR~~Il~AA~~l~~~~G~~~~Ti~~IA~~aGvs~~~lY~~F~sK~~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (215) T 2qko_A 24 AQNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIHERLGPDPSVVEESGRKPQN 103 (215) T ss_dssp ---CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGGGTC---------------C T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 98989999999999999998491407799999986899632786589899999999999999999999998743689879 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 889999999999998751899999999874-4678588999999999999999997067877877789999999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKL-EFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMT 159 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (213) .+.+..++..++.....++.....+..... ....+.............+...+.................+...+.+.+ T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~g~~ 183 (215) T 2qko_A 104 LELAIEYMQGLFGRITRDRTGYLALQELRLEAVRRPELRTTLTRTISENLKRDIGFHLDSGLPGDRSTVLMLYLAMNALI 183 (215) T ss_dssp HHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999999860848999999999852579999999999999999999998754589995899999999999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 9987359997758999999999999 Q T0596 160 FFFWMRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~l~~ 184 (213) ..++..............+...+.. T Consensus 184 ~~~l~~~~~~~~~~~~~~i~~~v~~ 208 (215) T 2qko_A 184 VEHLTLPGVLEGVDTERLVADLVTR 208 (215) T ss_dssp HHHHHCGGGSTTCCHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 9999768999876799999999997 No 43 >3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} Probab=99.72 E-value=6.4e-16 Score=142.25 Aligned_cols=181 Identities=12% Similarity=0.050 Sum_probs=115.7 Q ss_pred CCCCHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999717-8999999999999986484121499999984887778763158988999999999999999887543201345 Q T0596 1 MTINND-PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLV 79 (213) Q Consensus 1 ~t~~~~-~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (213) ||.++. ++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........+ T Consensus 4 m~~~p~~~rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196) T 3he0_A 4 MTDNPAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMP 83 (196) T ss_dssp -------CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 98998199999999999999997391306799999980999786511189999999999999899999999986135899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHH Q ss_conf 78899999999999987518999999998744678588-999999999999999997---06787787778999999999 Q T0596 80 ASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHI-QIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTI 155 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 155 (213) +.+.+..++..+++....++.................. ...........+...+.. .|.- ...........+..+ T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~~~~~~~~ 162 (196) T 3he0_A 84 LKERYRTMWLNIWNLAGSNLNAISNRVQYDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVF-KPLDNEVLSGLSFEA 162 (196) T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHTTC----CCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTCB-CSCCHHHHHHHTHHH T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHH T ss_conf 9999999999999997504689999999860888889999999999999999999999986999-999999999999999 Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHH Q ss_conf 99999987359997-7589999999999 Q T0596 156 YLMTFFFWMRDESE-NSRHTRQFLKRHL 182 (213) Q Consensus 156 ~~~~~~~~~~~~~~-~~~~~~~~l~~~l 182 (213) ..+....|...... +.......++..+ T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (196) T 3he0_A 163 SVALARKHALGFYQLDDDALEAAIEASW 190 (196) T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 9999999981899999999999999999 No 44 >2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} Probab=99.72 E-value=1.9e-15 Score=138.60 Aligned_cols=178 Identities=13% Similarity=0.081 Sum_probs=104.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+...+....... .+.+ T Consensus 6 ~d~e~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (194) T 2nx4_A 6 VDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDA-TGLD 84 (194) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHH T ss_conf 999999999999999999874904076999999879099888267899999999999987899999999875379-8599 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999987518999999---998744678-588999999999999999997---06787787778999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQM---IMSKLEFGH-IHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLTTI 155 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 155 (213) .....+..++............. ......... ..............+...+.. .+.- ...........+..+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~a~~i~~~ 163 (194) T 2nx4_A 85 ALRILCREVMPINEEQLLEARIAASLWPRAMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSV-GDIDVTIVVEQLLNM 163 (194) T ss_dssp HHHHHHHHHSCCSHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHH T ss_conf 9999999999999986566689999999752788999999999999999999999999986999-999999999999999 Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHH Q ss_conf 999999873599-977589999999999 Q T0596 156 YLMTFFFWMRDE-SENSRHTRQFLKRHL 182 (213) Q Consensus 156 ~~~~~~~~~~~~-~~~~~~~~~~l~~~l 182 (213) ..+....|..++ ..........+++.+ T Consensus 164 ~~g~~~~~~~~~~~~~~e~~~~~l~~~l 191 (194) T 2nx4_A 164 MMGMQILGVLTPGETSSERQLEMLEQFV 191 (194) T ss_dssp HHHHHHHHHHCTTTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 9999999987789999999999999998 No 45 >3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} Probab=99.72 E-value=1.8e-16 Score=146.59 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=86.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320--1345 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF--LDLV 79 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~--~~~~ 79 (213) +.+.++||++|+++|.+||.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+..... ...+ T Consensus 38 ~~R~~~tr~~Il~aA~~Lf~~~G~~~~tv~~IA~~AGvs~~t~Y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 117 (229) T 3bni_A 38 QRRSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGG 117 (229) T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 31099999999999999999859020769999999791998999986999999999999999999999999874168999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 788999999999999875189999 Q T0596 80 ASERIHHLIMIWLDALAVQRKVTR 103 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (213) +.+.+..++..+++....++.... T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~ 141 (229) T 3bni_A 118 WRGALDTVLDEYLAMKRTAPGFSL 141 (229) T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTT T ss_pred HHHHHHHHHHHHHHHHHHCHHHHH T ss_conf 999999999999999865928999 No 46 >2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.72 E-value=2e-16 Score=146.22 Aligned_cols=164 Identities=16% Similarity=0.047 Sum_probs=105.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320-13457 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVA 80 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~ 80 (213) ..+++++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+..... ...++ T Consensus 4 ~~~~e~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~ 83 (209) T 2gfn_A 4 IVDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGP 83 (209) T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99889999999999999999719130779999999693999999981999999999999999999999998863258987 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHH Q ss_conf 889999999999998751899999999874----4678588999999999999999997---067877877789999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKL----EFGHIHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEESTLT 153 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 153 (213) ...+..++..++.....+.......+.... .+................+...+.. .+.-..+.........+. T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~l~ 163 (209) T 2gfn_A 84 IEKLRNITASILPLDERRLAMTRVFLFFYAEGAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALV 163 (209) T ss_dssp HHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHC----CCSHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 88999999999999874615768999999860489899999999999999999999999998599999999999999999 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999998735 Q T0596 154 TIYLMTFFFWMR 165 (213) Q Consensus 154 ~~~~~~~~~~~~ 165 (213) .+..+....|+. T Consensus 164 ~~~~G~~~~~~~ 175 (209) T 2gfn_A 164 ALTDGLALQAIL 175 (209) T ss_dssp HHHHHHHHHHTT T ss_pred HHHHHHHHHHHH T ss_conf 999999999985 No 47 >3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A Probab=99.72 E-value=3.4e-16 Score=144.44 Aligned_cols=167 Identities=11% Similarity=0.119 Sum_probs=104.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |+.++..+|++|+++|.++|.++||+++|+++||+++|||+++|||||+||++|+.+++++..+.+...+..... ..+ T Consensus 2 M~R~~~~tre~Il~aA~~l~~e~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~--~~~ 79 (195) T 3frq_A 2 MPRPKLKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPI--GAG 79 (195) T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHSCC--CCH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCC T ss_conf 798941579999999999999749230779999998789977176767799999999999999999999986444--799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 88999999999999875189999999987446785889999999999999999970678778777899999999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTF 160 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (213) .+.+..++..++.....++...............+.... ........+...+.... . ...+.... ..+..+..+.. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~-~~~~~~~~-~~~~~~~~g~~ 155 (195) T 3frq_A 80 PQGLWEFLQVLVRSMNTRNDFSVNYLISWYELQVPELRT-LAIQRNRAVVEGIRKRL-P-PGAPAAAE-LLLHSVIAGAT 155 (195) T ss_dssp HHHHHHHHHHHHHTSCCSSCTTHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHHTTC-C-TTCCTTHH-HHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHC-C-CCCHHHHH-HHHHHHHHHHH T ss_conf 999999999999998436369999999976427999999-99999999999998566-9-88889999-99999999999 Q ss_pred HHHHCCCCCCHHH Q ss_conf 9873599977589 Q T0596 161 FFWMRDESENSRH 173 (213) Q Consensus 161 ~~~~~~~~~~~~~ 173 (213) ..|..+..+.... T Consensus 156 ~~~~~~~~~~~~~ 168 (195) T 3frq_A 156 MQWAVDPDGELAD 168 (195) T ss_dssp HHHHHSCCSCHHH T ss_pred HHHHHCCCCCHHH T ss_conf 9998779976799 No 48 >3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} Probab=99.71 E-value=2.9e-15 Score=137.10 Aligned_cols=81 Identities=25% Similarity=0.240 Sum_probs=69.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+...+.........+.+ T Consensus 31 ~~~e~rR~~Il~aA~~l~~e~G~~~~si~~IA~~agvs~~tlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (237) T 3kkd_A 31 QGSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFVERNAEALSAFWSSVEGDLQ 110 (237) T ss_dssp ----CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 88899999999999999997492508799999998929899988788999999999999999999999998735688599 Q ss_pred H Q ss_conf 9 Q T0596 83 R 83 (213) Q Consensus 83 ~ 83 (213) . T Consensus 111 ~ 111 (237) T 3kkd_A 111 E 111 (237) T ss_dssp H T ss_pred H T ss_conf 9 No 49 >3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} Probab=99.71 E-value=1.2e-15 Score=140.18 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=81.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 17899999999999998648412149999998488777876315898899999999999999988754320134578899 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERI 84 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213) ++++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++.+.+ T Consensus 1 s~a~R~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (189) T 3geu_A 1 SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDAL 80 (189) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 96899999999999998719152889999998790987998987999999999999999999999998760589999999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999875189 Q T0596 85 HHLIMIWLDALAVQRK 100 (213) Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (213) ..++..++.....+.. T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (189) T 3geu_A 81 YQFLFEFIFDIEERYI 96 (189) T ss_dssp HHHHHHHHHHSCHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999998575789 No 50 >3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} Probab=99.71 E-value=3.3e-16 Score=144.47 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=113.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875--4320134 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAE--SAGFLDL 78 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~--~~~~~~~ 78 (213) |+.+..++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+..... ....... T Consensus 4 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196) T 3col_A 4 MKKKDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTI 83 (196) T ss_dssp ------CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTS T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 77587899999999999999974955287999999979099888587699999999999999999999999754035799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH Q ss_conf 57889999999999998751899999999874467858899999----99999999999970678778777899999999 Q T0596 79 VASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAV----MRVSRTVQWVREAAQRDATFMRRALEESTLTT 154 (213) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (213) ++.+.+..++..+++....++.....+................. ......+..... .+.- .+.+.......+.. T Consensus 84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 161 (196) T 3col_A 84 DVTTRIRLYVQQVYDYSLANPDSLTIIQQIKALNGQGMTISAADADPNNIVANLLTAAID-AKVI-KQLPVSLHMGVVFS 161 (196) T ss_dssp CHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCC-------CCGGGTHHHHHHHHHHH-TTSB-CSSCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-CCCCHHHHHHHHHH T ss_conf 999999999999999998694999999986517543499999999999999999999998-5999-99999999999999 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 999999987359997 Q T0596 155 IYLMTFFFWMRDESE 169 (213) Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (213) +..+....|...... T Consensus 162 ~~~~~~~~~~~~~~~ 176 (196) T 3col_A 162 TIHTHTTNISKGRYA 176 (196) T ss_dssp HHHHHHHHHHTTSSC T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999999838989 No 51 >1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 Probab=99.71 E-value=2.8e-15 Score=137.25 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=91.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) ...+++|++|+++|.++|.++||+++|+++||+++|||+++|||||+|||+|+.++++.....+....... ....++.+ T Consensus 14 r~~~~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~~~~~-~~~~~~~e 92 (212) T 1pb6_A 14 RAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAF-REDFAPLA 92 (212) T ss_dssp -CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHHC-CTTSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHH T ss_conf 55388999999999999998591518899999997949888978778999999987899999999999975-05698789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999874 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKL 110 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (213) .+..++..++.....++.....+..... T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (212) T 1pb6_A 93 AIKEYIRLKLEVSRDYPQASRLFCMEML 120 (212) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 9999999999999978499999999986 No 52 >2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} Probab=99.71 E-value=2.3e-16 Score=145.68 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=86.9 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +.+++|++|+++|.+||.++||+ +||++||+++|||+++||+||+||++|+.+++++..+.+...+.... ...++.+. T Consensus 13 ~a~~~Re~Il~aA~~l~~~~G~~-~Ti~~IA~~agvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (199) T 2rek_A 13 DARRNYDRIIEAAAAEVARHGAD-ASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLA-AEHPPATA 90 (199) T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH-HHSCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHH T ss_conf 48999999999999999986978-87999999979199999867589889999999999998889999875-17999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999998751899999999 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) +..++..+++....++.....+.. T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~ 114 (199) T 2rek_A 91 LTRWLTSLAVFGAVTRGAARSLLP 114 (199) T ss_dssp HHHHHHHHHHHHHHHHHHGGGC-- T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 999999999998637379999998 No 53 >2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1 Probab=99.71 E-value=4.9e-16 Score=143.17 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=74.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH Q ss_conf 9997178999999999999986484121499999984887778763158988999999999999999887543201-345 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFL-DLV 79 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~-~~~ 79 (213) |-.+.++||++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++....+...+...... ..+ T Consensus 2 ~R~~~~~~R~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (199) T 2o7t_A 2 MRADALKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQLQAISTFPTD 81 (199) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99978999999999999999984914077999999868690227761899999999999999999999999987548998 Q ss_pred HHHHHHHHHHHH Q ss_conf 788999999999 Q T0596 80 ASERIHHLIMIW 91 (213) Q Consensus 80 ~~~~~~~~~~~~ 91 (213) +.+.+..++..+ T Consensus 82 ~~~~l~~~~~~~ 93 (199) T 2o7t_A 82 PEGVWTSFNQLL 93 (199) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 54 >2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} Probab=99.71 E-value=1.5e-14 Score=131.58 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=107.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999864841214999999848877787631589889999999999999998875432013457889999 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHH 86 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (213) .||++|+++|.++|.++||+++|+++||++|||++++||+||+||++|+.+++++..+.+...+.... ...+.+.+.. T Consensus 2 ~TRe~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 79 (179) T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTHKKIISLFEENK--EKTPEELLEM 79 (179) T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTT--TSCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHH T ss_conf 59999999999999974925176999999878093415451899999999999999999999998602--3899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998751899999999874467-8588999999999999999997067877877789999999999999998735 Q T0596 87 LIMIWLDALAVQRKVTRQMIMSKLEFG-HIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFFWMR 165 (213) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (213) +++....++.....+........ ...............+....+... ..........+..+..+...+|.. T Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 151 (179) T 2eh3_A 80 ----FLEVLYREKKVVYIFLFDLLCSEKFRNIYFEKIEDAKRRFEKFLEKHF----PSKAEILSEIILGFLRQLILHYVI 151 (179) T ss_dssp ----HHHHHHHTHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHC----TTTHHHHHHHHHHHHHHHHHHHTT T ss_pred ----HHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHH T ss_conf ----999998770679999998615888899999999999999999997618----988999999999999999999976 Q ss_pred CCCCCHHHHHHHHHHHHHH Q ss_conf 9997758999999999999 Q T0596 166 DESENSRHTRQFLKRHLTM 184 (213) Q Consensus 166 ~~~~~~~~~~~~l~~~l~~ 184 (213) ....+.......+.+.+.. T Consensus 152 ~~~~~~~~~~~~~~~~l~~ 170 (179) T 2eh3_A 152 KEERELPFLKEKLREGLKL 170 (179) T ss_dssp TSCCCHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH T ss_conf 5886626799999999999 No 55 >2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} Probab=99.71 E-value=3.8e-15 Score=136.16 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=75.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+..... ...+.+ T Consensus 19 ~~~~~~r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~-----~~~~~~ 93 (214) T 2zb9_A 19 RPAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGYFHAVEDTLAFPD-----TGDVRA 93 (214) T ss_dssp SHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHCCCC-----SSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----CCCCHH T ss_conf 987999999999999999983944088999999968785347422799999999999998888875330-----246245 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999875189999 Q T0596 83 RIHHLIMIWLDALAVQRKVTR 103 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (213) .+...+..++.....++.... T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ 114 (214) T 2zb9_A 94 DLLAQLRAFTHVMTRTPGGRI 114 (214) T ss_dssp HHHHHHHHHHHHHHHSHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHH T ss_conf 799999999999874700359 No 56 >2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A* Probab=99.71 E-value=4.4e-15 Score=135.69 Aligned_cols=168 Identities=16% Similarity=0.081 Sum_probs=111.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH Q ss_conf 17899999999999998648412149999998488777876315898899999999999999988754320--1345788 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF--LDLVASE 82 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~--~~~~~~~ 82 (213) .-+||++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+......... ...++.+ T Consensus 3 ~~~rR~~Il~aA~~l~~~~G~~~~s~~~Ia~~agis~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (202) T 2id6_A 3 MLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFD 82 (202) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 27999999999999998739352879999998890999997784899999999999999987999999874265776999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999999987518999999998744678588-9999999999999999970---6787787778999999999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHI-QIPAVMRVSRTVQWVREAA---QRDATFMRRALEESTLTTIYLM 158 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 158 (213) .+..++..+++....++.....+............ ...........+....... +.-..+.........+..+..+ T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202) T 2id6_A 83 FMERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSG 162 (202) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999999999796999999998765977899999999999999999999999839999999999999999999999 Q ss_pred HHHHHHCCCCCCHH Q ss_conf 99987359997758 Q T0596 159 TFFFWMRDESENSR 172 (213) Q Consensus 159 ~~~~~~~~~~~~~~ 172 (213) ....|......... T Consensus 163 ~~~~~~~~~~~~~~ 176 (202) T 2id6_A 163 FEEVYLRTYQGKPE 176 (202) T ss_dssp HHHHHHHHTTTCHH T ss_pred HHHHHHHHCCCCHH T ss_conf 99999971668824 No 57 >1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=99.71 E-value=2.5e-15 Score=137.57 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=77.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 17899999999999998648412149999998488777876315898899999999999999988754320134578899 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERI 84 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213) .++||++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+...+..... ..++.+.+ T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tlY~~F~~K~~L~~av~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (205) T 1rkt_A 10 KDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAE-HQSVWASI 88 (205) T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHH T ss_conf 99999999999999999819240889999998589965210168999999999999999999999998752-69879999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999987518 Q T0596 85 HHLIMIWLDALAVQR 99 (213) Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (213) ..++.........+. T Consensus 89 ~~~~~~~~~~~~~~~ 103 (205) T 1rkt_A 89 SSYLDELTEGLRDVA 103 (205) T ss_dssp HHHHHHHHHHTTTGG T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999856 No 58 >2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.70 E-value=1.2e-15 Score=140.10 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=70.0 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +.+++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++......... ...++.+. T Consensus 37 r~~~tR~~Il~AA~~l~~e~G~~~~Ti~~IA~~agVs~~tlY~yF~sKe~Ll~av~~~~~~~~~~~~-----~~~~~~~~ 111 (225) T 2id3_A 37 RTARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQSLPRA-----DTGALEED 111 (225) T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHCCCCC-----CCSSHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----HCCCCHHH T ss_conf 6099999999999999998493407799999996919888701079999999999998889988654-----21341447 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999875 Q T0596 84 IHHLIMIWLDALAV 97 (213) Q Consensus 84 ~~~~~~~~~~~~~~ 97 (213) +...+..+...... T Consensus 112 l~~~~~~~~~~~~~ 125 (225) T 2id3_A 112 LRANARLVVRTLDD 125 (225) T ss_dssp HHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999999867 No 59 >2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3} Probab=99.70 E-value=1.6e-16 Score=146.97 Aligned_cols=177 Identities=16% Similarity=0.099 Sum_probs=110.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |.....++|++|++||.++|.++||+++|+++||+++|||+++||+||+||++|+.+++++..+.+...+..... ..++ T Consensus 1 M~R~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~Ll~a~~~~~~~~~~~~~~~~~~-~~~~ 79 (195) T 2dg7_A 1 MARWDPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFGGSELLPPAVARAVLAADP-GAAP 79 (195) T ss_dssp CCSSCTTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTTTSSCCHHHHHHHHHTSCT-TSCH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCH T ss_conf 943481399999999999999869151779999998486934135428988999999999999988999986335-8994 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 8899999999999987518999999998744678588999---9999999999999970678778777899999999999 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIP---AVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (213) .+.+...+...+.....+......+...... .+..... ........+.........+ . .........+..++. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~~~~~~~~ 155 (195) T 2dg7_A 80 LTAVLDAMSQVGAQLVAQVEGAAQRRAVIDA--SPELQERERTKSAAISRAVQDALVRRQVD-A-DTAELVAQLATVAFG 155 (195) T ss_dssp HHHHHHHHHHHTTTTTTCCTTHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHTTCC-H-HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CCHHHHHHHHHHHHH T ss_conf 9999999999999998601689999999860--51589999999999999999999836999-8-879999999999999 Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHH Q ss_conf 999987359-9977589999999999 Q T0596 158 MTFFFWMRD-ESENSRHTRQFLKRHL 182 (213) Q Consensus 158 ~~~~~~~~~-~~~~~~~~~~~l~~~l 182 (213) +.+..|+.. ...+.......+...+ T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l 181 (195) T 2dg7_A 156 SAFRRWIDAEGHADFGSCLDTVTDRL 181 (195) T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999986689999999999999999 No 60 >3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} Probab=99.70 E-value=3.3e-16 Score=144.47 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=87.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) +.+.+++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++....+...+........++. T Consensus 6 ~~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (203) T 3b81_A 6 NINFNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLKESEEGLNSI 85 (203) T ss_dssp -CCHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 99879999999999999999739150769999998791888999988999999999999999999999999874369999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999987518999 Q T0596 82 ERIHHLIMIWLDALAVQRKVT 102 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (213) +.+..++..+++....++... T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~ 106 (203) T 3b81_A 86 ERLKKILLAGIKITSVNEQVK 106 (203) T ss_dssp HHHHHHHTCCC---------- T ss_pred HHHHHHHHHHHHHHHCCHHHH T ss_conf 999999999999986276789 No 61 >2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* Probab=99.70 E-value=1.2e-14 Score=132.43 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=95.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320-134578 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVAS 81 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (213) .+...+|++|+++|.++|.++||.++||++||++||||+++||+||+||++|+.+++++....+...+..... ...++. T Consensus 12 ~~~~~~R~~Il~aA~~lf~~~G~~~~t~~~Ia~~agvs~~tiY~yF~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213) T 2qtq_A 12 LETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPE 91 (213) T ss_dssp CCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 89868999999999999997394416799999997939889998866499999989999999999998886414678899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 899999999999987518999999998744678 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGH 114 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (213) +.+..++..++.....++.....+......... T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213) T 2qtq_A 92 AKLRRHISKCIDTYYDYPYLNRLLMRLVRDSDE 124 (213) T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHCCH T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCH T ss_conf 999999999999999892599999999860782 No 62 >3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} Probab=99.70 E-value=2.9e-15 Score=137.15 Aligned_cols=96 Identities=22% Similarity=0.176 Sum_probs=82.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+............++.+ T Consensus 5 r~~e~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~tiy~yF~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 84 (203) T 3cdl_A 5 RLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRLWNCAPPQSEVVYRPLVSLRE 84 (203) T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHHHHTC----CCSCCTTSCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 25589999999999999997591517899999997919889987869999999999999999999999988740366788 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999998751 Q T0596 83 RIHHLIMIWLDALAVQ 98 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~ 98 (213) .+..++..++...... T Consensus 85 ~l~~~~~~~~~~~~~~ 100 (203) T 3cdl_A 85 QLLELLWGKMRNLTDS 100 (203) T ss_dssp HHHHHHHHHHHHHTCH T ss_pred HHHHHHHHHHHHCCCH T ss_conf 9999999998850141 No 63 >2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A Probab=99.69 E-value=1.5e-15 Score=139.26 Aligned_cols=105 Identities=11% Similarity=0.177 Sum_probs=80.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) ||.++++.|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+........++ T Consensus 1 m~~~~~~lR~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192) T 2zcm_A 1 MHHHHHHMKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNHDDNYSI 80 (192) T ss_dssp -------CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-------CCH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 98547999999999999999873925077999999879198899888799999999779999999999999753589819 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88999999999999875189999999987 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMSK 109 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (213) . .+...+ +............+.... T Consensus 81 ~-~~~~~~---~~~~~~~~~~~~~~~~~~ 105 (192) T 2zcm_A 81 D-GLYQFL---FKFIFDVDERYIKLYVQL 105 (192) T ss_dssp H-HHHHHH---HHHHHHSCHHHHHHHHGG T ss_pred H-HHHHHH---HHHHHHHHHHHHHHHHHH T ss_conf 9-999999---999987543799999998 No 64 >3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans} Probab=99.69 E-value=2.4e-14 Score=129.98 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=70.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.++||++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.++++++.+.+...+...... ..+.+ T Consensus 22 ~r~~~tr~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (217) T 3mvp_A 22 ERSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFLTTIFADINS-QDSLD 100 (217) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTHHHHSS-HHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHH T ss_conf 00999999999999999987193427899999987809441554299999999999999999999999987516-99299 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q T0596 83 RIHHLIMI 90 (213) Q Consensus 83 ~~~~~~~~ 90 (213) .+...+.. T Consensus 101 ~~~~~~~~ 108 (217) T 3mvp_A 101 RFKKNPKE 108 (217) T ss_dssp HHHHCHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 65 >2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.69 E-value=6.2e-16 Score=142.37 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=88.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++||++|.++|.++||+++||++||++||||+++|||||+||++|+.++++...+.+.............+.. T Consensus 26 ~~~~~tR~~Il~aA~~l~~~~G~~~~T~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (212) T 2np3_A 26 PGETRTREAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQALELPGKIEEAITAAAQGGLDGIGE 105 (212) T ss_dssp ---------CHHHHHHHC---------------------------CCC-CHHHHHHHCHHHHHHHHHHHHTSSCSTTHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 98169999999999999998492306799999997809655447672999999866786777999987652268544899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .+......++.....+......+.. T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (212) T 2np3_A 106 RVVRAHLSVWDDVSSRPALMTMVRS 130 (212) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 9999999999876305799999983 No 66 >2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} Probab=99.69 E-value=1.1e-15 Score=140.48 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=92.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++|+++|.++|.++||+ +|+++||+++|||+++||+||+||++|+.++++++...+...+..... ..++.+ T Consensus 11 ~~~~~tR~~Il~aa~~l~~~~G~~-~Ti~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (194) T 2q24_A 11 ADAQRNRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCDSVPGLLA-ELPPAE 88 (194) T ss_dssp -----CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHHTHHHHHH-HSCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHH T ss_conf 648999999999999999987956-769999999498886799885899999999999999998888777522-699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999875189999999987446 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEF 112 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (213) .+..++..++.....++.....+....... T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (194) T 2q24_A 89 ALRAWTRRFIDYATAKLGMADALRAVVASG 118 (194) T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCC T ss_conf 999999999999986938999999863033 No 67 >2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* Probab=99.69 E-value=9.4e-15 Score=133.12 Aligned_cols=180 Identities=12% Similarity=0.093 Sum_probs=108.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH Q ss_conf 717899999999999998648412149999998488777876315898899999999999999988754320-1345788 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVASE 82 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (213) +.++||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++.+.+.+......... ...+... T Consensus 8 ~~~~tR~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (210) T 2xdn_A 8 EAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLAETHDHLARASESEDEVDPLG 87 (210) T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHHHTTHHHHHHHTCTTCSCHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 59999999999999999975914066999999989198899788699999999889999999999999876022377799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHHHHHHHHH---HHHHHHHHHHHH---HCCCCCCCCHHHHHHHH Q ss_conf 99999999999987518999999998744---67-8588999999---999999999997---06787787778999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLE---FG-HIHIQIPAVM---RVSRTVQWVREA---AQRDATFMRRALEESTL 152 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 152 (213) .+...+..++.....+............. .. .......... .....+...+.. .|....+.........+ T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~ 167 (210) T 2xdn_A 88 CMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAM 167 (210) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHSCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 99999999999987587988899998888872533499999999999999999999999999859999999999999999 Q ss_pred HHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHH Q ss_conf 99999999987359997-7-5899999999999 Q T0596 153 TTIYLMTFFFWMRDESE-N-SRHTRQFLKRHLT 183 (213) Q Consensus 153 ~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~l~ 183 (213) .++..+++..|+..+.. + .......++..+. T Consensus 168 ~~~~~G~~~~~l~~~~~~d~~~~~~~~i~~~l~ 200 (210) T 2xdn_A 168 FAYVDGLIRRWLLLPDSVDLLGDVEKWVDTGLD 200 (210) T ss_dssp HHHHHHHHHHHHHCGGGCCTTTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 999999999998789989999999999999999 No 68 >2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} Probab=99.69 E-value=6.7e-15 Score=134.27 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=79.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) ..+++++|++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+++...+........ . T Consensus 18 ~~~~~~~R~~Il~AA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~--~ 95 (231) T 2zcx_A 18 AQAKQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRYFETREQIFLKITAEGWKEWSAELCARLRELP--G 95 (231) T ss_dssp -CTTHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSC--T T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C T ss_conf 53399999999999999999709540779999999695989997887999999999999999999999999874599--4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999998751899999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .........+......++.....+.. T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (231) T 2zcx_A 96 AAPDAVGQVFAATLAARPLFCDLLAQ 121 (231) T ss_dssp TCHHHHHHHHHHHHHTCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 40999999999999869258899999 No 69 >3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} Probab=99.68 E-value=2.2e-15 Score=138.01 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=86.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320-134578 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF-LDLVAS 81 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (213) .+.+++|++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.+++.++.+.+...+..... ...++. T Consensus 26 ~~~~~tr~~Il~aA~~l~~~~G~~~~si~~IA~~aGvS~~tly~~F~sK~~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~ 105 (222) T 3bru_A 26 PDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPL 105 (222) T ss_dssp -CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 76489999999999999998290307799999995948658979958899999999999999999999999746899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999998751899 Q T0596 82 ERIHHLIMIWLDALAVQRKV 101 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (213) +.+..++..+......++.. T Consensus 106 ~~l~~~~~~~~~~~~~~~~~ 125 (222) T 3bru_A 106 ARLRLFTRMAEEGMARHGFR 125 (222) T ss_dssp HHHHHHHHHHHHHHHTTTTC T ss_pred HHHHHHHHHHHHHHHCCCHH T ss_conf 99999999999998626067 No 70 >3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} Probab=99.68 E-value=9.6e-15 Score=133.04 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=102.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999999999986484121499999984887778763158988999999999999999887543201345788999 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIH 85 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (213) +++|++|+++|.++|.++||+++||++||++||||+||||+||+||++|+.+++.+..+.+...+.. ..+. T Consensus 3 ~e~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sK~~Ll~~~~~~~~~~~~~~~~~---------~~~~ 73 (170) T 3egq_A 3 TDQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMHAFRKMMEEFNP---------RSVE 73 (170) T ss_dssp CHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHTCCC---------SSHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---------HHHH T ss_conf 6899999999999998729230679999998683942076508999999999999999999987645---------2599 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999987518999999998744678588999999999999999997067877877789999999999999998735 Q T0596 86 HLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFFWMR 165 (213) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (213) ..+..++.....++.....++............ .........+.. ... .. ..+......+..+..+...+|.. T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~-~~-~~~~~~a~~l~~~~~g~~~~~~~ 146 (170) T 3egq_A 74 EVVDYGIGFIAERREFIEFMMYALSQVRIEELE-RMFGEALEKVAS----LFE-GC-RHPRETAIALMAMLDGLSIYSLY 146 (170) T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTSCHHHHH-HHHHHHHHHHHH----HTT-TS-SCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHH----HHH-CC-CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998879999999986333229999-999999999999----987-27-88389999999999999999987 Q ss_pred CCCCCHHHHHHHHH Q ss_conf 99977589999999 Q T0596 166 DESENSRHTRQFLK 179 (213) Q Consensus 166 ~~~~~~~~~~~~l~ 179 (213) ............+. T Consensus 147 ~~~~~~~~~~~~~~ 160 (170) T 3egq_A 147 FDLGKLEKYREIAM 160 (170) T ss_dssp SCCCCHHHHHHHHH T ss_pred CCCCCHHHHHHHHH T ss_conf 58763899999999 No 71 >2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=99.68 E-value=5.6e-16 Score=142.71 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=73.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |+.+++++|++||++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++....+.............. T Consensus 1 m~~r~~~tr~~il~aA~~l~~~~G~~~~ti~~IA~~aGvs~~siy~~F~~K~~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (180) T 2fd5_A 1 MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGK 80 (180) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTSCTTSCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 98009999999999999999870955177999999868894248787689999999999999999999999763389831 Q ss_pred HHH Q ss_conf 889 Q T0596 81 SER 83 (213) Q Consensus 81 ~~~ 83 (213) ... T Consensus 81 ~~~ 83 (180) T 2fd5_A 81 ERR 83 (180) T ss_dssp HHH T ss_pred HHH T ss_conf 489 No 72 >3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} Probab=99.68 E-value=4.3e-15 Score=135.75 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=77.5 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +.+++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++.....+...+........++.+. T Consensus 8 k~~~~R~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (204) T 3eup_A 8 KSDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEM 87 (204) T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 45999999999999999973946288999999979099999776456479999999999999999999987435888999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q T0596 84 IHHLIMIWLDA 94 (213) Q Consensus 84 ~~~~~~~~~~~ 94 (213) +..+...+... T Consensus 88 l~~~~~~~~~~ 98 (204) T 3eup_A 88 LLVYSSMYNDA 98 (204) T ss_dssp HTCHHHHHHGG T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 73 >3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} Probab=99.68 E-value=2.9e-15 Score=137.10 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=74.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) +|.+..+||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++.+..+.+............++ T Consensus 9 ~~~~~~~rR~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~~ 88 (221) T 3c2b_A 9 TTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAPQ 88 (221) T ss_dssp -----CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHTSSCCCCCCCSCCCHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 87655199999999999999974904087999999989098799988799899999999999999999999987403531 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999987518 Q T0596 81 SERIHHLIMIWLDALAVQR 99 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ 99 (213) .......+..++......+ T Consensus 89 ~~~~~~~~~~~~~~~~~~~ 107 (221) T 3c2b_A 89 LADHLEVFAHDLLDVLAGD 107 (221) T ss_dssp HHHHHHHHHHHHHHHHTCH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999987212 No 74 >2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 Probab=99.68 E-value=1.9e-14 Score=130.68 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=75.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+....... .. T Consensus 4 R~~e~tR~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sKe~L~~a~~~~~~~~~~~~~~~~-------~~ 76 (202) T 2d6y_A 4 RDPEATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKMLDLAISVPVD-------PD 76 (202) T ss_dssp ---CCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHSCCC-------GG T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-------CC T ss_conf 98899999999999999997491407799999985919889967877999999999999999999851541-------01 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .+...+...+.....++.....+.. T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (202) T 2d6y_A 77 DIEGWIDRLLDYHAAHPELLRLLFW 101 (202) T ss_dssp GHHHHHHHHHHHHHHCTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 1899999999999989899999999 No 75 >2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* Probab=99.68 E-value=3.4e-15 Score=136.56 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=77.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999999999986484121499999984887778763158988999999999999999887543201345788999 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIH 85 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (213) ..+|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+++...+........++.+.+. T Consensus 3 ~~~Re~Il~AA~~l~~e~G~~~~s~~~IA~~aGvs~~~lY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (185) T 2yve_A 3 TSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRDPEDPLERLR 82 (185) T ss_dssp SCHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCSSTTSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 78999999999999998392508799999986819231845348999999999999999999999998738999999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q T0596 86 HLIMIWLD 93 (213) Q Consensus 86 ~~~~~~~~ 93 (213) .++..... T Consensus 83 ~~~~~~~~ 90 (185) T 2yve_A 83 AVVVTLAE 90 (185) T ss_dssp HHHHHHTS T ss_pred HHHHHHHH T ss_conf 99999987 No 76 >2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} Probab=99.67 E-value=9.2e-15 Score=133.18 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=77.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH Q ss_conf 7899999999999998648412149999998488777876315898899999999999999988754320--13457889 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF--LDLVASER 83 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~ 83 (213) ..||++|++||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+..... ....+.+. T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tlY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (210) T 2qco_A 12 LARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIKNGTLKEI 91 (210) T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHCTTCTTCSSSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 89999999999999997393528899999985889025887598999999999999999999999998764022219999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999875189 Q T0596 84 IHHLIMIWLDALAVQRK 100 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (213) +..++..++.....+.. T Consensus 92 ~~~~~~~~~~~~~~~~~ 108 (210) T 2qco_A 92 LTSFGLAFIEIFNQPEA 108 (210) T ss_dssp HHHHHHHHHHHHTSHHH T ss_pred HHHHHHHHHHHHCCHHH T ss_conf 99999999998606166 No 77 >2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} Probab=99.67 E-value=1.9e-15 Score=138.59 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=87.5 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +.++||++|+++|.++|.++|| ++||++||+++|||+++||+||+||++|+.+++++..+.+...+..... ..++.+. T Consensus 10 d~~~tR~~Il~aA~~l~~~~G~-~~tv~~IA~~agvs~~t~Y~~F~sK~~L~~av~~~~~~~~~~~~~~~~~-~~~~~~~ 87 (196) T 2qwt_A 10 DAARNRARVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLA-AEGPGEA 87 (196) T ss_dssp HHHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH T ss_conf 5899999999999999998597-7889999999695997998785999999999999999999999888602-7999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999998751899999999 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) +..++..+++....++.....+.. T Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~ 111 (196) T 2qwt_A 88 LFVFMRDMVRSAAADYGLVDALVG 111 (196) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 999999999999768599999987 No 78 >2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} Probab=99.67 E-value=3.1e-15 Score=136.88 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=82.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++++.+.+...+........++.+ T Consensus 7 ~~~~~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~yF~~Ke~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212) T 2ras_A 7 TEHDAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLASDLPPRR 86 (212) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 88188999999999999997391307799999986859140346189878999999999999999999999823899999 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999875189 Q T0596 83 RIHHLIMIWLDALAVQRK 100 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~ 100 (213) .+..++...+.....+.. T Consensus 87 ~l~~~~~~~~~~~~~~~~ 104 (212) T 2ras_A 87 KMYEFFARRFVVMRRKWE 104 (212) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999987312 No 79 >3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} Probab=99.66 E-value=3.1e-15 Score=136.90 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=70.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+...+...... +.. T Consensus 13 ~~~~~~R~~Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~---~~~ 89 (208) T 3cwr_A 13 VPDAVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVESWIAPIFPGFEADPQD---AAA 89 (208) T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTTTTSCCSSCSS---HHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC---CHH T ss_conf 98299999999999999998591406799999985889665024799999999999999999999999875168---068 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q T0596 83 RIHHLIMIWLDA 94 (213) Q Consensus 83 ~~~~~~~~~~~~ 94 (213) .+..++...... T Consensus 90 ~~~~~~~~~~~~ 101 (208) T 3cwr_A 90 ALERIVYDIAQA 101 (208) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 80 >3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} Probab=99.66 E-value=3.5e-15 Score=136.45 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=90.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|++||.++|.++||+++||++||+++|||+++|||||+||++|+.+++++....+...+..... .++.+ T Consensus 13 ~~~~~tr~~Il~aA~~lf~e~G~~~~si~~IA~~agvs~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~ 90 (218) T 3gzi_A 13 SGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPVLAQLHKARR--ETRQE 90 (218) T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH--TSCTT T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHH T ss_conf 9836899999999999999839230579999998688964044159999999998899999999999999873--68352 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999998751899999999874467 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFG 113 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (213) .+..++..++.....++.....+........ T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (218) T 3gzi_A 91 SPAALLQTYYSVMSKHPHFPRLMLRIAGLDQ 121 (218) T ss_dssp CHHHHHHHHHHHHHHSTTHHHHHHHHHTSCT T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC T ss_conf 5999999999999979169899999986076 No 81 >2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} Probab=99.66 E-value=7.4e-15 Score=133.96 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=91.4 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +...+|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.++++....++...... ....++.+. T Consensus 13 ~~~~tr~~Il~aA~~l~~e~G~~~~t~~~IA~~aGvs~~~lY~~F~~K~~L~~av~~~~~~~~~~~~~~--~~~~~~~~~ 90 (237) T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVVTAAVTAGPT--GAADSPQDA 90 (237) T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHHHHHHHHHTCSCC--CTTCCHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHH T ss_conf 845589999999999999729240679999999790988898887999999999999999886421223--335999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999999999875189999999987446785889 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQ 118 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (213) +..+...+++....++.....+............. T Consensus 91 l~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 125 (237) T 2hxo_A 91 VRAVALGLWDATEAHPWLATQLATQLSRTPWGTVA 125 (237) T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHHHHCTTCSHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH T ss_conf 99999999999998905999997610367541558 No 82 >3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... Probab=99.66 E-value=1.6e-14 Score=131.28 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=77.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999864841214999999848877787631589889999999999999998875432013457889999 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHH 86 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (213) ++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++....+...+........++.+.+.. T Consensus 2 ~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (194) T 3bqz_B 2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYL 81 (194) T ss_dssp --CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 59999999999999975915177999999879098888143889999999999999999999999986259999999999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999987518 Q T0596 87 LIMIWLDALAVQR 99 (213) Q Consensus 87 ~~~~~~~~~~~~~ 99 (213) ............+ T Consensus 82 ~~~~~~~~~~~~~ 94 (194) T 3bqz_B 82 YNELSLTTQYYYP 94 (194) T ss_dssp HHHHHHHCSSSGG T ss_pred HHHHHHHHHHHCH T ss_conf 9999999875273 No 83 >2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} Probab=99.66 E-value=1.4e-15 Score=139.67 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=76.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+.+++|++||++|.++|.++||+++||++||+++|||+++|||||+||++|+.++++...+.+.......... T Consensus 26 ~~~~~tR~~Il~AA~~lf~~~G~~~~Tv~~Ia~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~------ 99 (226) T 2pz9_A 26 GSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAERETTALIEATQLDPAD------ 99 (226) T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCCTTC------ T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHH------ T ss_conf 87899999999999999998593528899999996948747978859999999999999889988862145545------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998751899999999874 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKL 110 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (213) ....+..+++....++.....+..... T Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226) T 2pz9_A 100 -LPGYAGILFDHFAARPDHYRLITWGRL 126 (226) T ss_dssp -HHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_pred -HHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf -689999999999988799999999986 No 84 >2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A Probab=99.65 E-value=5e-16 Score=143.12 Aligned_cols=110 Identities=10% Similarity=0.138 Sum_probs=89.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++++|++|+++|.++|.++||+++||++||++||||+|+|||||+||++|+.+++++... .............++.+ T Consensus 3 a~~e~tre~Il~aA~~lf~e~G~~~~si~~IA~~agvs~~tlY~yF~~K~~L~~av~~~~~~-~~~~~~~~~~~~~~~~~ 81 (186) T 2jj7_A 3 ASREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGL-ANELPNFLEKNQFNPIN 81 (186) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHSC-SSCCCCHHHHTTTCHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHH T ss_conf 86789999999999999998591418799999987919887778779999999999999998-88779998752367899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999998751899999999874467 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMIMSKLEFG 113 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (213) .+..++..++.....++.....+........ T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (186) T 2jj7_A 82 ALREYLTVFTTHIKENPEIGTLAYEEIIKES 112 (186) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCH T ss_conf 9999999999999979389999999874180 No 85 >2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} Probab=99.65 E-value=1.2e-15 Score=140.20 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=100.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) ++++||++|++||+++|.++||+++||++||++||||+++||+||+||++|+.+..... .............++.+. T Consensus 45 r~~~tR~~Il~AA~~lf~e~G~~~vTv~~IA~~AGVs~gtlY~hF~sK~~Ll~a~~~~~---~~~~~~~~~~~~~~~~~~ 121 (260) T 2of7_A 45 KKTRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTREDIVLTDEYDP---VMAAELAARPAGEPWSDS 121 (260) T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHTSSCSHH---HHHHHHHTCCSSCCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHCCCCCHHHH T ss_conf 09999999999999999981945388999999969889899998589999999999999---878898652148999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 9999999999987518999999998744678588999999---9999999999-97067877877789999999999999 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVM---RVSRTVQWVR-EAAQRDATFMRRALEESTLTTIYLMT 159 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (213) +..++..++.....+.......+...... .......... .....+...+ ...+..............+..++... T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~a~~~~~~~~~~ 200 (260) T 2of7_A 122 LRHVLRKALGLGAGEEAELIRLRTRLLAE-VPAVRARMLENMSDTGRMLARAIADRTGLDPDGLEVRIVSMSLVGGLMEV 200 (260) T ss_dssp HHHHHHHHHTCSSSSHHHHHHHHHHHHHH-CHHHHHHHHHHTTSCCCHHHHHHHHHHCCCTTSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999850648999999987137-98999999999999999999999986389977447999999999999999 Q ss_pred HHHHHCCC-CCCHH Q ss_conf 99873599-97758 Q T0596 160 FFFWMRDE-SENSR 172 (213) Q Consensus 160 ~~~~~~~~-~~~~~ 172 (213) ...|.... ..+.. T Consensus 201 ~~~~~~~~~~~~~~ 214 (260) T 2of7_A 201 SRYWAEHDHEESLA 214 (260) T ss_dssp HHHHHHHTTTCCHH T ss_pred HHHHHHCCCCCCHH T ss_conf 99998768989999 No 86 >2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.65 E-value=2.4e-15 Score=137.70 Aligned_cols=102 Identities=21% Similarity=0.109 Sum_probs=80.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) +.+++++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+............... T Consensus 11 ~~~~~~~R~~Il~aA~~l~~~~G~~~~t~~~Ia~~aGvs~gtlY~~F~sKe~L~~a~~~~~~~~l~~~~~~~~~~~~~~~ 90 (216) T 2oi8_A 11 ERYRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLRAAAASGADLA 90 (216) T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 31279999999999999999719441889999999797986999975998999999999999999999987307644299 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999998751899999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .....+..+...++..+..++. T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~ 112 (216) T 2oi8_A 91 ----GLAHALRAWALDDPQRYFLIFG 112 (216) T ss_dssp ----HHHHHHHHHHHHCHHHHHHHHS T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH T ss_conf ----9999999999975689999982 No 87 >1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1 Probab=99.64 E-value=8.1e-14 Score=125.78 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=63.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 997178999999999999986484121499999984887778763158988999999999999999887543 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +.+.+++|++|++||.++|.++||++ |+++||++||||+|+||+||+||++|+.+++++..+.+...+... T Consensus 7 ~~r~~~tr~~Il~aA~~lf~~~G~~~-t~~~IA~~aGvs~~~iY~yF~sK~~L~~~v~~~~~~~~~~~~~~~ 77 (224) T 1t33_A 7 TTKGEQAKSQLIAAALAQFGEYGLHA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPH 77 (224) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77789999999999999999879075-699999983899242157889999999999999999999999999 No 88 >2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A Probab=99.64 E-value=9.5e-15 Score=133.10 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=99.0 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) .++++|++|++||.++|.++|+ +||++||+++|||+++||+||+||++|+.+++++..+.+...+........++.+. T Consensus 11 ~r~~tr~~Il~aa~~l~~~~G~--~T~~~IA~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (190) T 2v57_A 11 ARERTRRAILDAAMLVLADHPT--AALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDAA 88 (190) T ss_dssp --CHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 4799999999999999988699--62999999969199999777389999999999999999999999876469999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999875189999999987446785889999999999999999970678778777899999999999 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYL 157 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (213) +..++..+++. ......+............. .........+...+...+....+........++..+.. T Consensus 89 l~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190) T 2v57_A 89 LRRVVESQLDL----GPIVLFVYYEPSILADPELA-AYFDIGDEAIVEVLNRASTERPEYPPGWARRVFWALMQ 157 (190) T ss_dssp HHHHHHHHHTT----CTHHHHHHHCTTTTTSHHHH-HHHTCSCHHHHHHHHHTC-----CCTTHHHHHHHHHHH T ss_pred HHHHHHHHHHH----HHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999971----28999998654444889999-99999999999999981988899999999999999999 No 89 >2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} Probab=99.64 E-value=3e-15 Score=136.98 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=88.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432013457 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVA 80 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (213) |..++..+|++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.+++++....+.... ....++ T Consensus 23 ~~~r~~~tre~Il~AA~~l~~e~G~~~~T~~~IA~~aGVs~~tlY~hF~sKe~Ll~av~~~~~~~~~~~~----~~~~~~ 98 (241) T 2hxi_A 23 MAGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVADRILLSAMDGY----RPEGDW 98 (241) T ss_dssp -----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHHHHHHHHHHHTTC----CCCSCH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC----CCCCCH T ss_conf 8864200799999999999998292406699999997909989999869999999999999998865303----567998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899999999999987518999999998 Q T0596 81 SERIHHLIMIWLDALAVQRKVTRQMIMS 108 (213) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (213) .+.+..++..+++....++.....+... T Consensus 99 ~~~l~~~~~~~~~~~~~~p~~~~l~~~~ 126 (241) T 2hxi_A 99 KQRLTAVALRLRESFGQQPQLAAVWGRH 126 (241) T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHC T ss_conf 9999999999999999892499999763 No 90 >2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} Probab=99.64 E-value=4.3e-15 Score=135.76 Aligned_cols=99 Identities=21% Similarity=0.246 Sum_probs=72.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999999999999988754320134578 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVAS 81 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213) +.+.+++|++|+++|.++|.++||+++||++||++|||++++||+||+||++|+.+++++....... . ...+. T Consensus 34 ~r~~~~tR~~Il~aA~~l~~~~G~~~~T~~~IA~~aGVs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~----~---~~~~~ 106 (214) T 2guh_A 34 KRTAEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFRAAAEIV----F---SGPLD 106 (214) T ss_dssp -CCHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCHHHHHHH----T---CSCST T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH----C---CCCCH T ss_conf 7799999999999999999984934067999999949498699888288999999999999888752----1---56401 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999998751899999999 Q T0596 82 ERIHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .....++..++.....+......++. T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (214) T 2guh_A 107 GLGERMVSMFARPLEPYKPLSLNILF 132 (214) T ss_dssp THHHHHHHHHTSCCCTTCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 48999999999988543158999999 No 91 >3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V} Probab=99.63 E-value=1.8e-14 Score=130.94 Aligned_cols=155 Identities=10% Similarity=0.153 Sum_probs=98.3 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +..+||++|++||.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+...... ....+. T Consensus 9 r~~~tr~~Il~aa~~l~~e~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~-----~~~~~~ 83 (177) T 3kkc_A 9 QIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGRD-----VTFEEY 83 (177) T ss_dssp HHHHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHHHTSCCCC-----CCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH T ss_conf 899999999999999998749741789999998790887652056986789999999989999998787-----537999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999875189999999987446785889999999999999999970678778777899999999999999987 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMTFFFW 163 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (213) +..++.....++..+..++.. ................+.......+..............+.....+++.+| T Consensus 84 ----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (177) T 3kkc_A 84 ----LVHILKHFEQNQDSIATLLLS----DDPYFLLRFRSELEHDVYPRLREEYITKVDIPEDFLKQFLLSSFIETLKWW 155 (177) T ss_dssp ----HHHHHHHHHHTGGGHHHHHHT----TCHHHHHHHHHHHHHHTHHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHHH T ss_pred ----HHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf ----999999999859999999854----887999999999999999999987442567738999999999999999999 Q ss_pred HCCCCCCH Q ss_conf 35999775 Q T0596 164 MRDESENS 171 (213) Q Consensus 164 ~~~~~~~~ 171 (213) +....+.. T Consensus 156 ~~~~~~~s 163 (177) T 3kkc_A 156 LHQRQKMT 163 (177) T ss_dssp HHCSSCCC T ss_pred HHCCCCCC T ss_conf 87699999 No 92 >2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* Probab=99.62 E-value=4.8e-15 Score=135.40 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=78.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999864841214999999848877787631589889999999999999998875432013457889999 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHH 86 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (213) -||++|++||.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..++ +........++.+.+.. T Consensus 6 lTR~~Il~AA~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~L~~av~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (234) T 2opt_A 6 LTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDIVLTE----VEVPEPEPGRWAEQVKE 81 (234) T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHGGG----CCCCCCCTTCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHCCCCCCHHHHHHH T ss_conf 42999999999999971944168999999978587799998799899999999999999----98733446998999999 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999987518999999 Q T0596 87 LIMIWLDALAVQRKVTRQM 105 (213) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~ 105 (213) ++..+++....++.....+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (234) T 2opt_A 82 MCRSLRRMFLAHRDLARIA 100 (234) T ss_dssp HHHHHHHHHHHSTTHHHHH T ss_pred HHHHHHHHHHHCCCHHHHH T ss_conf 9999999999892499998 No 93 >1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=99.62 E-value=1.1e-14 Score=132.72 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=78.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589-88999999999999999887543201345 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE-KDELIDAWFDRADSRMLKEAESAGFLDLV 79 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s-Ke~L~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (213) ||.+ +++|++|+++|.++|.++||+++||++||++||||+++||+||+| |+.|+.++.+...+.+............. T Consensus 1 M~~r-~~tR~~Il~aA~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (191) T 1sgm_A 1 MTSR-GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSD 79 (191) T ss_dssp -----CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSS T ss_pred CCCC-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 9980-899999999999999983903066999999879098899888599088899999999988899999876512302 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 78899999999999987518 Q T0596 80 ASERIHHLIMIWLDALAVQR 99 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (213) +...+..++..+......+. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (191) T 1sgm_A 80 PVEAIQLFIKKTASQFDNTE 99 (191) T ss_dssp HHHHHHHHHHHHHHTTSSGG T ss_pred HHHHHHHHHHHHHHHHHCCH T ss_conf 57899999999999974030 No 94 >2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=99.62 E-value=2.1e-14 Score=130.36 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=58.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 7178999999999999986484121499999984887778763158988999999999999999 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRML 67 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~ 67 (213) +.+++|++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.+++.+..+... T Consensus 9 r~~~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~ 72 (192) T 2fq4_A 9 RNIETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSAAAARL 72 (192) T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHSCCCC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9789999999999999998593407799999998909989963469999999999999789998 No 95 >2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1 Probab=99.60 E-value=1.6e-13 Score=123.42 Aligned_cols=96 Identities=11% Similarity=0.210 Sum_probs=71.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+...||++|++||.+||.++||+++||++||++||||+++||+||+||++|+.+++++....+...... ..+... T Consensus 9 ~~~~~tk~~Il~Aa~~L~~e~G~~~~Tv~~Ia~~agvs~~t~Y~yF~sKe~Ll~~~~~~~~~~~~~~~~~----~~~~~~ 84 (195) T 2iu5_A 9 EKSIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFENDFAELINDNSD----YYGWQN 84 (195) T ss_dssp CTTSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHTSSCC----SSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC----CCCHHH T ss_conf 0479999999999999998769740679999998793876676874999999999999999999985226----046898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999875189999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMI 106 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ 106 (213) ...........+...+...+ T Consensus 85 ----~~~~~~~~~~~~~~~~~~~~ 104 (195) T 2iu5_A 85 ----ELLLLLRYLDENQIFYQKIF 104 (195) T ss_dssp ----HHHHHHHHHHHTHHHHHHHH T ss_pred ----HHHHHHHHHHHHHHHHHHHH T ss_conf ----76789999999899999998 No 96 >2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.59 E-value=6.1e-15 Score=134.61 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=83.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 17899999999999998648412149999998488777876315898899999999999999988754320134578899 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERI 84 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213) ...+|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.++++++.+++.. .......++.+.+ T Consensus 17 ~~~tR~~Il~AA~~lf~~~G~~~~S~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~---~~~~~~~~~~~~l 93 (243) T 2g7l_A 17 PALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDALLGEVDL---TGAGAEEDWREQL 93 (243) T ss_dssp CCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHHTTSSCS---SCC---CCHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHHH T ss_conf 2649999999999999980933078999999979198889887798899999999866776514---5457666769999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998751899999999 Q T0596 85 HHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) ..++..+++....++.....+.. T Consensus 94 ~~~~~~~~~~~~~~p~~~~~~~~ 116 (243) T 2g7l_A 94 RAVLTSYTLVLFAHPQLARSALV 116 (243) T ss_dssp HHHHHHHHHHHHHCHHHHHHHHH T ss_pred HHHHHHHHHHHHHCHHHHHHHHH T ss_conf 99999999999989529999975 No 97 >2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} Probab=99.58 E-value=4.1e-15 Score=135.96 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=82.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999864841214999999848877787631589889999999999999998875432013457889999 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHH 86 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (213) -+|++|+++|.++|.++||+++||++||+++||++++|||||+||++|+.++++...+.+...... ....++.+.+.. T Consensus 4 ~tR~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~--~~~~~~~~~l~~ 81 (207) T 2vpr_A 4 LDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHHHVLP--LPNETWQDFLRN 81 (207) T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHHHHHHHHCCCCSC--CTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHH T ss_conf 379999999999999719552889999999686877899988988999999999999987764145--435999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999875189999999 Q T0596 87 LIMIWLDALAVQRKVTRQMI 106 (213) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (213) ++..+++....++....... T Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (207) T 2vpr_A 82 NAKSFRQALLMYRDGGKIHA 101 (207) T ss_dssp HHHHHHHHHHHSTTHHHHHT T ss_pred HHHHHHHHHHHCCCHHHHHC T ss_conf 99999999998838999962 No 98 >2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A Probab=99.57 E-value=1e-14 Score=132.84 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=79.9 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999998648412149999998488777876315898899999999999999988754320134578899999 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHHL 87 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (213) +|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+++...... .....+.+....+ T Consensus 4 tR~~Il~AA~~lf~~~G~~~~sv~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (207) T 2vke_A 4 NRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLP--AAGESWQSFLRNN 81 (207) T ss_dssp SHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCSC--CTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHH T ss_conf 69999999999999739352789999999791987998888988999999999999876532036--5345648999999 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999875189999999 Q T0596 88 IMIWLDALAVQRKVTRQMI 106 (213) Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (213) +..+++....++....... T Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (207) T 2vke_A 82 AMSFRRALLRYRDGAKVHL 100 (207) T ss_dssp HHHHHHHHHTSTTHHHHHT T ss_pred HHHHHHHHHHCCCHHHHHH T ss_conf 9999999998932999986 No 99 >3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} Probab=99.56 E-value=5e-14 Score=127.41 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999999999986484121499999984887778763158988999999999999999887543201345788999 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIH 85 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (213) .-+|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...... ....++.+.+. T Consensus 24 ~~~Re~Il~AA~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~Ll~a~~~~~~~~~~~~~~~--~~~~~~~~~~~ 101 (211) T 3fiw_A 24 KMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQAAMAPHAAEPLP--EPGEDWHGWFL 101 (211) T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHHHTTHHHHTSCCC--CTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHH T ss_conf 8799999999999999859353659999999893886999988999999999999888887432457--66899899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998751899999999 Q T0596 86 HLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ 107 (213) .++..+++....++........ T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~ 123 (211) T 3fiw_A 102 RNTRSFRRTLLARRDGARLHAG 123 (211) T ss_dssp HHHHHHHHHHHTSTTHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHH T ss_conf 9999999999979117999865 No 100 >3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} Probab=99.56 E-value=9.6e-15 Score=133.06 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=81.4 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999998648412149999998488777876315898899999999999999988754320134578899999 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHHL 87 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (213) +|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+...... ....++.+.+..+ T Consensus 3 ~R~~Il~AA~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 80 (209) T 3bqy_A 3 DRARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVDGVADAAGA--TGDGDWSERTARL 80 (209) T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHTTTGGGGGCS--TTSSCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHH T ss_conf 79999999999999749452779999999792987999987998989999999888888741025--6578989999999 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999875189999999 Q T0596 88 IMIWLDALAVQRKVTRQMI 106 (213) Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (213) +..++++...++.....+. T Consensus 81 ~~~~~~~~~~~~~~~~~~~ 99 (209) T 3bqy_A 81 ARALRAALLAHRDGARVFA 99 (209) T ss_dssp HHHHHHHHHTSTTHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHH T ss_conf 9999999998824999985 No 101 >2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.54 E-value=1.1e-14 Score=132.45 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=68.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999999999887543201345788 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) .+++..|++||++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+............ T Consensus 7 R~r~~~Re~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~~lY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~ 86 (202) T 2i10_A 7 RRRGFDDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRPTAHEA 86 (202) T ss_dssp -----CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHCSCCHHHHHHHHTSSSHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99986199999999999998692117799999997909999988718999999999999888999999998728861037 Q ss_pred H Q ss_conf 9 Q T0596 83 R 83 (213) Q Consensus 83 ~ 83 (213) . T Consensus 87 ~ 87 (202) T 2i10_A 87 V 87 (202) T ss_dssp H T ss_pred H T ss_conf 9 No 102 >1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1 Probab=99.54 E-value=1.8e-14 Score=130.90 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=78.6 Q ss_pred CHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7178999999999999986-484121499999984887778763158988999999999999999887543201345788 Q T0596 4 NNDPMRDAIVDTAVELAAH-TSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASE 82 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e-~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213) ++--||++|++||.++|.+ +||+++||++||+++||++++|||||+||++|+.++++++.+++.. .....++.+ T Consensus 2 ~~~ltr~~Il~AA~~lf~e~~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~-----~~~~~~~~~ 76 (220) T 1z0x_A 2 EPKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQE-----PALCGEWYS 76 (220) T ss_dssp --CCSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCC-----CCCCSCHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCCHHH T ss_conf 973459999999999998818942057999999979689899999698999999999999866336-----754489899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999875189999999 Q T0596 83 RIHHLIMIWLDALAVQRKVTRQMI 106 (213) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ 106 (213) .+......+++....++.....+. T Consensus 77 ~~~~~~~~~~~~~~~~p~~~~l~~ 100 (220) T 1z0x_A 77 DLLAFMENYYDLYQQFPCAVAIEI 100 (220) T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHH T ss_conf 999999999999987935999997 No 103 >2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.49 E-value=4.6e-14 Score=127.75 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=77.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999998875432013457889 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASER 83 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) +...+|++|+++|.++|.++| ++||++||+++|||+++|||||+||++|+.++++++.+.+. .......++.+. T Consensus 8 ~~~~tR~~Il~AA~~lf~e~G--~~t~~~IA~~aGvs~~tlY~yF~sKe~L~~av~~~~~~~~~----~~~~~~~~~~~~ 81 (213) T 2g7g_A 8 VARLDRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREID----GSAFERLPWDEA 81 (213) T ss_dssp ---CCHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCC----CGGGGTSCHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH----HHCCCCCCHHHH T ss_conf 840129999999999999829--86299999996868216999887989999999999999998----750126887789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999998751899999999 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIM 107 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ 107 (213) ....+..+++....++.....+.. T Consensus 82 ~~~~~~~~~~~~~~~p~~~~~~~~ 105 (213) T 2g7g_A 82 FSEWARSYRAAFSRHPTAIRLLAT 105 (213) T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 999999999999988529999976 No 104 >3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} Probab=99.49 E-value=6.5e-14 Score=126.54 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=62.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 971789999999999999864841214999999848877787631589889999999999999998875 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAE 71 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~ 71 (213) .+.++||++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++++....+...+. T Consensus 10 ~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~lY~yF~sK~~Ll~a~~~~~~~~~~~~~~ 78 (156) T 3ljl_A 10 EDTEITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALDGRIFKMFIEHLE 78 (156) T ss_dssp SHHHHHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHTTHHHHHHGGGSC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 379999999999999999871902077999999868886089888849999999999999999998751 No 105 >1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Probab=95.79 E-value=0.0053 Score=41.17 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999986484121499999984887778763158988 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++.+..++. .| .|+.+||+..|||+.|||+||+..+ T Consensus 11 ~~~a~~l~~-~G---~~~~~IA~~~gVSr~TlYrylpa~~ 46 (52) T 1jko_C 11 QEQISRLLE-KG---HPRQQLAIIFGIGVSTLYRYFPASS 46 (52) T ss_dssp HHHHHHHHH-TT---CCHHHHHHTTSCCHHHHHHHSCTTC T ss_pred HHHHHHHHH-CC---CCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 999999998-78---9899999997979999999855125 No 106 >2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17 Probab=94.62 E-value=0.1 Score=31.17 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=43.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 97178999999999999986484121499999984887778763158988999999999 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) .+-.++|...+=++-++....+|+.-|+.+||.+.||++.++|++= +|+.=|.+..+. T Consensus 24 L~~qqr~AA~llv~nEi~~~~~~~kkT~~eiAeEvGisr~tLy~Wk-tqnk~Fi~Y~n~ 81 (155) T 2ao9_A 24 LTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWR-TKNQDFIAFKSE 81 (155) T ss_dssp SCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHH-HHCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH-HCCHHHHHHHHH T ss_conf 6099999999999887603675667579999999574699999886-044669999999 No 107 >1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A Probab=92.88 E-value=0.082 Score=31.87 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=40.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CHHHHHHHCCCH Q ss_conf 17899999999999998648412149999998488-777876315898 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAV-SLDEIRLYFREK 51 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGv-s~~t~y~yF~sK 51 (213) =++++.+|++.-.+...++||.- |+++||+..|+ |++++++|.... T Consensus 4 LT~rq~~il~~I~~~~~~~g~~P-S~~EIa~~~GikS~stv~~~l~~L 50 (202) T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPP-TRAEIAQRLGFRSPNAAEEHLKAL 50 (202) T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC-CHHHHHHHTTCSSHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 39999999999999999829897-699999982999737899987513 No 108 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=92.77 E-value=0.045 Score=33.95 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 214999999848877787631589889999999999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRA 62 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~ 62 (213) .+|+.|||++||||++|+.+.+.+|..+=.+.-+++ T Consensus 2 ~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~tr~rV 37 (332) T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKV 37 (332) T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 737999999989699999999779599999999999 No 109 >2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} Probab=91.79 E-value=0.37 Score=26.75 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 17899999999999998648412149999998488777876315 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .++-|+.+|.-..+--.+.|-.+.|+.+||+..||+..++|.+. T Consensus 8 ~~EFK~~AV~lv~e~~~~~~s~g~~~~~VA~~LGI~~~tL~~Wv 51 (108) T 2rn7_A 8 SPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108) T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999998543456565559999988299999999999 No 110 >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Probab=90.99 E-value=0.12 Score=30.60 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=28.2 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 121499999984887778763158988999999999 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) ...|+.|||+++|||++|+-+.+.+|+.+=.+.-++ T Consensus 8 ~~~Tl~diA~~agVS~~TVSr~Ln~~~~vs~~tr~r 43 (366) T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQR 43 (366) T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 976299999998849999999858989999999999 No 111 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=90.54 E-value=0.037 Score=34.54 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=28.2 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 121499999984887778763158988999999999 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) ..+|+.|||++||||.+|+-+.+.++..+=.+.-++ T Consensus 4 ~~~Ti~DIA~~aGVS~~TVSr~Ln~~~~vs~~tr~k 39 (332) T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQK 39 (332) T ss_dssp ------------------------------------ T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 987799999998969999999968959999999999 No 112 >1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 Probab=90.24 E-value=0.21 Score=28.64 Aligned_cols=40 Identities=20% Similarity=0.092 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 178999999999999986-4841214999999848877787631589 Q T0596 5 NDPMRDAIVDTAVELAAH-TSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e-~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++|+.+|++. +.+ +| .+|+.+||++.|||+.|+|+.+.. T Consensus 19 k~eR~~~Il~~----L~~~~~--~vt~~eLa~~l~VS~~TIrrDl~~ 59 (187) T 1j5y_A 19 RQERLKSIVRI----LERSKE--PVSGAQLAEELSVSRQVIVQDIAY 59 (187) T ss_dssp HHHHHHHHHHH----HHHCSS--CBCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHH----HHHCCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999----998699--776999999979799999999999 No 113 >1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A Probab=90.20 E-value=0.085 Score=31.75 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 14999999848877787631589889 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +|+.|||+.+|||.+|+.+.+.++.+ T Consensus 1 vTi~dIA~~aGVS~sTVSrvLn~~~~ 26 (65) T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAK 26 (65) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTT T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 98999999989399999999779898 No 114 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=89.63 E-value=0.049 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=26.8 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 12149999998488777876315898899999 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) ..+|+.|||++||||++|+-+.+.++..+=.+ T Consensus 2 kk~Ti~dIA~~aGVS~~TVSraLn~~~~Vs~~ 33 (349) T 1jye_A 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAK 33 (349) T ss_dssp -------------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 97789999999885999999996795999999 No 115 >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Probab=89.45 E-value=0.1 Score=31.20 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 149999998488777876315898899 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) .||.|||+++|||++|+-+.+.++..+ T Consensus 1 aTi~dIA~~aGVS~~TVSrvLn~~~~V 27 (340) T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFV 27 (340) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCC T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 968999999895999999996897999 No 116 >1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A Probab=89.40 E-value=0.18 Score=29.18 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=42.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999717899999999999998648412149999998488777876315898 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ||..+.......+...++.+.++=-+..|+.+||+.+|+|+..|++.|... T Consensus 1 l~~~r~~~~~~~i~~i~~~i~~n~~~~~sl~~la~~~~~S~~~l~r~Fk~~ 51 (129) T 1bl0_A 1 MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129) T ss_dssp --------CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 987735665999999999999834899999999999891999999999999 No 117 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=89.02 E-value=0.12 Score=30.53 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=25.1 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 12149999998488777876315898899 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) ..+|+.|||+++|||++|+-+.+.++..+ T Consensus 9 k~vTikdIA~~aGVS~~TVSraLn~~~~v 37 (344) T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRNRGDV 37 (344) T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTTCSCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99769999999895999999997897999 No 118 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=89.01 E-value=0.058 Score=33.04 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 2149999998488777876315898899 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) -+||.|||++||||.+|+-+.+.++..+ T Consensus 3 ~~Ti~DIA~~aGVS~~TVSr~Ln~~~~V 30 (338) T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYV 30 (338) T ss_dssp ---------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 8889999999898899999996897999 No 119 >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Probab=88.55 E-value=0.065 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 2149999998488777876315898899 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) ..|+.|||++||||++|+.+.+.++..+ T Consensus 8 r~Ti~dIA~~aGVS~~TVSr~Ln~~~~V 35 (348) T 3bil_A 8 RPTLKDVARQAGVSIATASRALADNPAV 35 (348) T ss_dssp ---------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 9739999999885999999997897999 No 120 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=88.55 E-value=0.065 Score=32.65 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=26.9 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 12149999998488777876315898899999 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) ..+||.|||+.||||.+|+-+.+.++..+=.+ T Consensus 5 ~k~Ti~dIA~~aGVS~~TVSrvLn~~~~Vs~~ 36 (333) T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQ 36 (333) T ss_dssp -------------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 99859999999897999999997896999999 No 121 >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Probab=88.38 E-value=0.068 Score=32.50 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 2149999998488777876315898899999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) ++|+.|||+.+|||++|+-+.+.+|..+=.. T Consensus 4 ~vTikdIA~~aGVS~sTVSr~Ln~~~~Vs~~ 34 (339) T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQQVSEQ 34 (339) T ss_dssp ------------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 4459999999895999999995898999999 No 122 >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 Probab=87.93 E-value=0.44 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 78999999999999986484121499999984887778763158988 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +++|.+|+.. +.+ | ..|+.+||+..|+|++++++|-..-+ T Consensus 14 ~~~R~~Il~~----L~~-~--~~~~~ela~~l~is~~~v~~HL~~L~ 53 (202) T 2p4w_A 14 NETRRRILFL----LTK-R--PYFVSELSRELGVGQKAVLEHLRILE 53 (202) T ss_dssp SHHHHHHHHH----HHH-S--CEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHH----HHC-C--CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999999----981-9--98899999998909989999999999 No 123 >2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Probab=87.77 E-value=0.47 Score=25.95 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=34.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999717899999999999998648412149999998488777876315898 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) |+.++++.=++|.++. |+. |-.++|+..||+++++..|...+ T Consensus 3 ~~~~~ee~l~Rl~e~~-------g~~--sq~eLA~~lgvs~~tis~~~~~~ 44 (189) T 2fjr_A 3 LGWSNVDVLDRICEAY-------GFS--QKIQLANHFDIASSSLSNRYTRG 44 (189) T ss_dssp TTCCHHHHHHHHHHHH-------TCS--SHHHHHHHTTCCHHHHHHHHHSS T ss_pred CCCCHHHHHHHHHHHH-------CCC--CHHHHHHHHCCCHHHHHHHHHCC T ss_conf 5667899999999984-------987--79999999796999999999579 No 124 >2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Probab=86.48 E-value=0.87 Score=23.85 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=37.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 8999999999999986484121499999984887778763158988 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ..|..|...-.++..++|+ |-.++|+.+||++++++++..+|- T Consensus 14 ~~r~~l~~~ir~~R~~~gl---Tq~elA~~~Gis~~~is~iE~G~~ 56 (83) T 2a6c_A 14 KMRSQLLIVLQEHLRNSGL---TQFKAAELLGVTQPRVSDLMRGKI 56 (83) T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHTSCHHHHHHHHTTCG T ss_pred HHHHHHHHHHHHHHHHCCC---CHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 9999999999999999699---889999998557635558862421 No 125 >3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} Probab=86.28 E-value=0.91 Score=23.70 Aligned_cols=40 Identities=10% Similarity=0.264 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999999986484121499999984887778763158988 Q T0596 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +.|-+.-..+..++|+ |..++|+.+||++++++++..++. T Consensus 6 ~~i~~~l~~lr~~~g~---s~~~LA~~~Gvs~~tis~ie~g~~ 45 (78) T 3b7h_A 6 EFVSEHLMELITQQNL---TINRVATLAGLNQSTVNAMFEGRS 45 (78) T ss_dssp HHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHCTTC T ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999999999999499---899999998929999999986998 No 126 >1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Probab=86.27 E-value=0.43 Score=26.24 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 78999999999999986484121499999984887778763158988 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++.|.+|+.. ...| .|..+||+..|+++.++|+++...+ T Consensus 9 ~~~R~~I~~l-----~~~G---~s~~~IAk~lg~s~~tV~r~lk~~~ 47 (141) T 1u78_A 9 DTERAQLDVM-----KLLN---VSLHEMSRKISRSRHCIRVYLKDPV 47 (141) T ss_dssp HHHHHHHHHH-----HHTT---CCHHHHHHHHTCCHHHHHHHHHSGG T ss_pred HHHHHHHHHH-----HHCC---CCHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 9999999999-----9979---9999999998958999999999701 No 127 >2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} SCOP: a.4.1.2 PDB: 2ezl_A Probab=86.16 E-value=0.9 Score=23.74 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=36.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 71789999999999999864841-21499999984887778763158988 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWE-AVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~-~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +..+.|-.++.+...|... |.. ...+..+|.+-|||.+|+|++|.--+ T Consensus 30 ~~A~~rL~~l~~v~~L~~~-G~~~~~A~~~VA~~~~vs~~TL~nW~~~V~ 78 (99) T 2ezk_A 30 RLAEKWLPAVQAADEMLNQ-GISTKTAFATVAGHYQVSASTLRDKYYQVQ 78 (99) T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHSCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 9999999999999999986-982899999999996988999999999968 No 128 >2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} Probab=86.14 E-value=0.81 Score=24.09 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 8999999999999986484121499999984887778763158988 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ..++-+-+--..+..++|+ |..++|+..||+++++.+|..++. T Consensus 5 ~~k~~f~~~Lk~lr~~~g~---tq~elA~~lgvs~~~i~~~E~G~~ 47 (94) T 2kpj_A 5 KQKAIFSENLNSYIAKSEK---TQLEIAKSIGVSPQTFNTWCKGIA 47 (94) T ss_dssp HHHHHHHHHHHHHHTTSSS---CHHHHHHHHTCCHHHHHHHHTTSC T ss_pred HHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHCCHHHHHHHHCCH T ss_conf 8999999999999999099---999999988530056788760100 No 129 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=85.68 E-value=0.12 Score=30.62 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=27.1 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 48412149999998488777876315898899 Q T0596 23 TSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 23 ~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) -|-..+|+.|||++||||++|+-+.+.++..+ T Consensus 8 p~~k~vTi~diA~~aGVS~sTVSrvLn~~~~V 39 (355) T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALKKDSPI 39 (355) T ss_dssp -------------------------------- T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99999769999999886999999996898999 No 130 >2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Probab=85.56 E-value=0.72 Score=24.49 Aligned_cols=39 Identities=33% Similarity=0.393 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 17899999999999998648412149999998488777876315898 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ..+.|++|++.+ +.| .+.++||++.+|+.+++|....-. T Consensus 27 s~~lR~rIV~l~-----~~G---~s~r~iArr~~VS~~~V~kil~R~ 65 (159) T 2k27_A 27 PEVVRQRIVDLA-----HQG---VRPCDISRQLRVSHGCVSKILGRY 65 (159) T ss_dssp CHHHHHHHHHHH-----HHT---CCHHHHHHHHTCCSHHHHHHHCCS T ss_pred CHHHHHHHHHHH-----HCC---CCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 899999999999-----869---999999999885888999999999 No 131 >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A Probab=85.39 E-value=0.49 Score=25.82 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++|.+|+..- . +| ..|+.+||+..|++++++++|...- T Consensus 19 ~~~R~~Il~~L----~-~~--~~t~~ela~~l~~s~~~v~~hL~~L 57 (192) T 1uly_A 19 EDTRRKILKLL----R-NK--EMTISQLSEILGKTPQTIYHHIEKL 57 (192) T ss_dssp SHHHHHHHHHH----T-TC--CBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHH----H-HC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999----8-29--9689999999890999999999999 No 132 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Probab=85.30 E-value=0.71 Score=24.55 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 178999999999999986484121499999984887778763158988 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+++|-+|+. ++. .| .++.+|++..|++++++.+|+.--. T Consensus 29 a~p~Rl~IL~----~L~-~~---~~~~el~~~l~is~stvs~HL~~L~ 68 (96) T 1y0u_A 29 TNPVRRKILR----MLD-KG---RSEEEIMQTLSLSKKQLDYHLKVLE 68 (96) T ss_dssp SCHHHHHHHH----HHH-TT---CCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCHHHHHHHH----HHC-CC---CHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 8999999999----844-54---1788999998939889999999998 No 133 >2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 Probab=84.90 E-value=1.5 Score=22.01 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=37.4 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 717899999999999998648412149999998488777876315898899 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +..+.+..|-+.-..+-.++|+ |..++|+.+||++.++++|-.++... T Consensus 3 ~~~~~~~~~g~~ir~~R~~~gl---tq~~lA~~~gvs~~~i~~~E~g~~~p 50 (77) T 2b5a_A 3 NEIEIKRKFGRTLKKIRTQKGV---SQEELADLAGLHRTYISEVERGDRNI 50 (77) T ss_dssp CHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCSCC T ss_pred CHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 6489999999999999998099---99999989697999999998599999 No 134 >2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Probab=83.97 E-value=0.91 Score=23.71 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 17899999999999998648412149999998488777876315898 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+++|-+|+..- .+. ..|+.+||+..|++.+++.+|..-- T Consensus 19 adp~R~~Il~~L----~~~---~~~v~eLa~~l~~s~~~vS~HL~~L 58 (114) T 2oqg_A 19 SDETRWEILTEL----GRA---DQSASSLATRLPVSRQAIAKHLNAL 58 (114) T ss_dssp TCHHHHHHHHHH----HHS---CBCHHHHHHHSSSCHHHHHHHHHHH T ss_pred CCHHHHHHHHHH----HCC---CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 899999999999----819---9589999999891999999999999 No 135 >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Probab=83.64 E-value=0.49 Score=25.80 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 17899999999999998648412149999998488777876315898 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+++|.+|+..- .++ ..|+.+||+..|++.+++++|..-- T Consensus 16 a~p~R~~Il~~L----~~~---~~~v~ela~~l~~s~~~vs~HL~~L 55 (118) T 3f6o_A 16 ADPTRRAVLGRL----SRG---PATVSELAKPFDMALPSFMKHIHFL 55 (118) T ss_dssp TSHHHHHHHHHH----HTC---CEEHHHHHTTCCSCHHHHHHHHHHH T ss_pred CCHHHHHHHHHH----HHC---CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 899999999999----809---9777777988696999999999889 No 136 >3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli} Probab=83.55 E-value=0.95 Score=23.53 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 999999999864841214999999848877787631589 Q T0596 12 IVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 12 Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++...+.+.++--+..|+.+||+.+|+|+.+|.+.|+. T Consensus 8 ~~~rv~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 46 (120) T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120) T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999867689999999999999299999999998 No 137 >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Probab=83.08 E-value=1.9 Score=21.28 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 78999999999999986484---------------12149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSW---------------EAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~---------------~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ++.+..|++...+++...|+ ...|+.+||+..|+++++++.....- T Consensus 5 ~~~~~~~~e~~~~~~~~~Gl~~~~~~v~~~L~~~~~p~t~~eLa~~l~isks~vs~~l~~L 65 (152) T 1ku9_A 5 EEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKL 65 (152) T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999999999999819799999999999976989699999978486651499999999 No 138 >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} Probab=82.93 E-value=0.98 Score=23.46 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 178999999999999986484121499999984887778763158 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+++|-+|+..-.+ . +..++.+|++..|++++++.+|.+ T Consensus 25 ~~p~Rl~Il~~L~~----~--~~~~v~ela~~l~~s~stvS~HL~ 63 (99) T 2zkz_A 25 AHPMRLKIVNELYK----H--KALNVTQIIQILKLPQSTVSQHLC 63 (99) T ss_dssp CSHHHHHHHHHHHH----H--SCEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHH----C--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 89999999999964----7--990599999998858768999999 No 139 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=82.77 E-value=0.19 Score=29.04 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=24.0 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 149999998488777876315898899 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +|+.|||+++|||++|+-+.+.++..+ T Consensus 3 ati~diA~~agVS~~TVsraLn~~~~V 29 (330) T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYV 29 (330) T ss_dssp --------------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 989999999894999999996896999 No 140 >2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} Probab=82.76 E-value=0.99 Score=23.42 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999999986484-12149999998488777876315898899 Q T0596 11 AIVDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 11 ~Il~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) ..+..+.+.+.++=. ..+|+.++|+..|+|+.+|.+.|...-++ T Consensus 3 ~~v~~~~~~I~~~~~~~~~sl~~lA~~~~~s~~~l~r~f~~~~g~ 47 (107) T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGI 47 (107) T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSS T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 999999999997568999799999999892999999999999892 No 141 >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 Probab=82.71 E-value=0.6 Score=25.09 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=27.4 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 99998648412149999998488777876315898 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++|.+.+ ...|+.+||++.|++++|+|++..+- T Consensus 14 Le~la~~~-~~~~l~eia~~lgl~~st~~RlL~tL 47 (249) T 1mkm_A 14 LDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVVL 47 (249) T ss_dssp HHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99997289-99899999998791999999999999 No 142 >3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Probab=82.59 E-value=1.3 Score=22.57 Aligned_cols=53 Identities=8% Similarity=0.027 Sum_probs=33.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 99717899999999999998648412149999998488777876315898899999 Q T0596 2 TINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 2 t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) |.+.-+-.+++-+--...-.+.| +|-.++|++.|++.+++.+|..++..+=.. T Consensus 3 t~e~~~~~~~L~~~~~~~R~~~g---ltq~elA~~lg~s~~~is~~E~G~~~~s~~ 55 (80) T 3kz3_A 3 TQEQLEDARRLKAIWEKKKNELG---LSYESVADKMGMGQSAVAALFNGINALNAY 55 (80) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT---CCHHHHHHHTTSCHHHHHHHHTTSSCCCHH T ss_pred CHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 88999999999999999999959---989999987880497999988899999999 No 143 >1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A Probab=82.44 E-value=1.4 Score=22.22 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.0 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 4121499999984887778763158988 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) -...|+.+||+++|+|+..|.+.|+..- T Consensus 91 ~~~~sl~~lA~~~g~S~~~l~R~Fk~~~ 118 (133) T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT 118 (133) T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 6999999995471999899999999998 No 144 >2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} Probab=82.35 E-value=1.9 Score=21.28 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 178999999999999986484121499999984887778763158988999999999 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) ++++++.|-+--..+=.+.|+ |..++|+.+|++++++++|=.++...=...+-. T Consensus 4 ~~~~~~~l~~~ir~~R~~~gl---tq~~lA~~lgvs~~~is~~E~G~~~p~~~~l~~ 57 (84) T 2ef8_A 4 HDHRYRCLVQLLTKLRKEASL---SQSELAIFLGLSQSDISKIESFERRLDALELFE 57 (84) T ss_dssp CCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 979999999999999999599---999999987269999999987999999999999 No 145 >3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} Probab=82.14 E-value=1.2 Score=22.83 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 789999999999999864841214999999848877787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++|-+|+..- .++ .+.++.+|++..|++++++.+|.+- T Consensus 23 ~p~Rl~Il~~L----~~~--~~~~~~ela~~l~ls~stvS~HL~~ 61 (99) T 3cuo_A 23 HPKRLLILCML----SGS--PGTSAGELTRITGLSASATSQHLAR 61 (99) T ss_dssp SHHHHHHHHHH----TTC--CSEEHHHHHHHHCCCHHHHHHHHHH T ss_pred CHHHHHHHHHH----HCC--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999----769--9941999999989298789999999 No 146 >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} Probab=81.89 E-value=1.1 Score=23.10 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=30.3 Q ss_pred HHHHHHHHH---HHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999999---8648412149999998488777876315898899 Q T0596 12 IVDTAVELA---AHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 12 Il~AA~~l~---~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) =++-+++++ .+.+ ...|+.+||++.|++++|+|++-.+-.+. T Consensus 19 sl~Ral~IL~~~~~~~-~~l~l~eia~~lgl~kst~~RlL~tL~~~ 63 (265) T 2ia2_A 19 SLARGLAVIRCFDHRN-QRRTLSDVARATDLTRATARRFLLTLVEL 63 (265) T ss_dssp HHHHHHHHHHTCCSSC-SSEEHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 9999999999997379-99799999999794999999999999975 No 147 >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Probab=81.48 E-value=1.3 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1789999999999999864841214999999848877787631589 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+++|-+|+..- .+ | ..++.+|++..|++++++.+|..- T Consensus 24 ~~p~Rl~Il~~L----~~-~--~~~v~ela~~l~~s~stvS~HL~~ 62 (106) T 1r1u_A 24 GDYNRIRIMELL----SV-S--EASVGHISHQLNLSQSNVSHQLKL 62 (106) T ss_dssp CSHHHHHHHHHH----HH-C--CBCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 899999999999----83-9--946999998876586689999999 No 148 >2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} Probab=81.25 E-value=0.52 Score=25.59 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1789999999999999864841214999999848877787631589 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+++|-+|+..-. + | ..++.+|++..|++++++++|+.- T Consensus 19 ~dp~Rl~Il~~L~----~-~--~~~v~ela~~l~is~stvS~HL~~ 57 (118) T 2jsc_A 19 ADPTRCRILVALL----D-G--VCYPGQLAAHLGLTRSNVSNHLSC 57 (118) T ss_dssp SSHHHHHHHHHHH----T-T--CCSTTTHHHHHSSCHHHHHHHHHH T ss_pred CCHHHHHHHHHHH----C-C--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 8999999999998----2-9--938999999989199999999999 No 149 >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} Probab=81.17 E-value=2.4 Score=20.37 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999998648412149999998488-77787631589889999999 Q T0596 11 AIVDTAVELAAHTSWEAVRLYDIAARLAV-SLDEIRLYFREKDELIDAWF 59 (213) Q Consensus 11 ~Il~AA~~l~~e~G~~~~tv~~IA~~aGv-s~~t~y~yF~sKe~L~~a~~ 59 (213) .+.+...+.+. .+.|+++||+..|| +..|||++-...+++..... T Consensus 19 e~~e~I~~~i~----~G~sl~~i~~~~gvps~sTl~rWl~~~~ef~e~y~ 64 (143) T 3hef_A 19 EVADDICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYA 64 (143) T ss_dssp HHHHHHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHTTTCHHHHHHHH T ss_pred HHHHHHHHHHH----CCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHH T ss_conf 99999999998----79879999872799968999999981789999999 No 150 >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A Probab=81.11 E-value=1.3 Score=22.60 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 789999999999999864841214999999848877787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++|-+|+. ++.. | ..++.+|++..|++++++.+|..- T Consensus 45 dp~Rl~IL~----~L~~-~--~~~v~eLa~~l~ls~stvS~HL~~ 82 (122) T 1r1t_A 45 DPNRLRLLS----LLAR-S--ELCVGDLAQAIGVSESAVSHQLRS 82 (122) T ss_dssp CHHHHHHHH----HHTT-C--CBCHHHHHHHHTCCHHHHHHHHHH T ss_pred CHHHHHHHH----HHHC-C--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999----9981-9--956999999989198899999999 No 151 >1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 Probab=81.00 E-value=1.9 Score=21.22 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=35.0 Q ss_pred CCCCHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 9997178999--99999999998648412149999998488777876315898899999 Q T0596 1 MTINNDPMRD--AIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 1 ~t~~~~~~R~--~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) |...++..-+ .|=..-.++-.++|+ |..++|+++|+++++++++-.++...=.. T Consensus 1 M~~~~~~~~~~~~ig~~lk~~R~~~gl---tq~~lA~~~gis~~~i~~~E~g~~~ps~~ 56 (74) T 1y7y_A 1 MQSHHDHYADLVKFGQRLRELRTAKGL---SQETLAFLSGLDRSYVGGVERGQRNVSLV 56 (74) T ss_dssp ----CCHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCSCCBHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 988741389999999999999998099---99999989896999999998799899999 No 152 >3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Probab=80.96 E-value=1.3 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=32.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999986484121499999984887778763158988 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +.-+.+.+.++--+..|+.+||+.+|+|+..|.+.|...- T Consensus 4 v~rv~~~i~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~~ 43 (108) T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSR 43 (108) T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999987448999999999998919999999999998 No 153 >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D Probab=80.54 E-value=2 Score=21.07 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 7899999999999998648412149999998488777876315 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .++-+..|.+-..+-.++|. +++.+||+..||+++|+.... T Consensus 3 t~~~EdYL~~I~~l~~~~~~--v~~~~iA~~L~vs~~svt~~l 43 (142) T 1on2_A 3 TPSMEMYIEQIYMLIEEKGY--ARVSDIAEALAVHPSSVTKMV 43 (142) T ss_dssp CHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHTSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHCCCHHHHHHHH T ss_conf 96099999999999963899--769999999698878999999 No 154 >1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Probab=80.41 E-value=1.4 Score=22.21 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 78999999999999986484121499999984887778763158 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +++|-+|+..- .+.| ..++.+|++..|++.+++.+|.. T Consensus 41 dp~Rl~Il~~L----~~~~--~~~v~ela~~l~is~~~vS~HL~ 78 (122) T 1u2w_A 41 DENRAKITYAL----CQDE--ELCVCDIANILGVTIANASHHLR 78 (122) T ss_dssp SHHHHHHHHHH----HHSS--CEEHHHHHHHHTCCHHHHHHHHH T ss_pred CHHHHHHHHHH----HHCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999----8879--90699999888457007999999 No 155 >1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Probab=80.32 E-value=2.5 Score=20.27 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=44.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 9997178999999999999986484121499999984887778763158988999999999999 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~ 64 (213) ||+...-...+|=+--..+-.++|+ |..++|+++|++++++.++=.++-..-...+..+.. T Consensus 1 m~~~d~~~~~~ig~rir~~R~~~gl---t~~elA~~~g~s~~~ls~iE~g~~~ps~~~l~~ia~ 61 (192) T 1y9q_A 1 MSLTDVMFKSQIANQLKNLRKSRGL---SLDATAQLTGVSKAMLGQIERGESSPTIATLWKIAS 61 (192) T ss_dssp ---CHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 9864788999999999999998299---999999998949999999976997555369999987 No 156 >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Probab=80.28 E-value=0.5 Score=25.73 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1789999999999999864841214999999848877787631589 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .|++|-+||..- .+ | ..|+.+|++..|++++++.+|..- T Consensus 56 AdPtRl~IL~~L----~~-g--~~tv~eLa~~lgisqstvS~HL~~ 94 (151) T 3f6v_A 56 AEPTRRRLVQLL----TS-G--EQTVNNLAAHFPASRSAISQHLRV 94 (151) T ss_dssp TSHHHHHHHHHG----GG-C--CEEHHHHHTTSSSCHHHHHHHHHH T ss_pred CCHHHHHHHHHH----HH-C--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 799999999999----82-9--917999999988787789998754 No 157 >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Probab=80.01 E-value=0.7 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++|-+|+.. +.+ | ..++.+|++..|++++++.+|..-- T Consensus 22 ~~~Rl~Il~~----L~~-~--~~~v~ela~~l~is~~tvS~HL~~L 60 (98) T 3jth_A 22 NERRLQILCM----LHN-Q--ELSVGELCAKLQLSQSALSQHLAWL 60 (98) T ss_dssp SHHHHHHHHH----TTT-S--CEEHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHH----HHC-C--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999999----981-9--9679999999892988999999999 No 158 >1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Probab=79.47 E-value=1.7 Score=21.64 Aligned_cols=35 Identities=34% Similarity=0.369 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 1789999999999999864841214999999848877787631 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.|++|++++. . +.|.++||++.||+.++++.. T Consensus 34 s~dlR~rIV~l~~-----~---G~s~r~iArrf~VS~s~V~ki 68 (149) T 1k78_A 34 PDVVRQRIVELAH-----Q---GVRPCDISRQLRVSHGCVSKI 68 (149) T ss_dssp CHHHHHHHHHHHH-----T---TCCHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHHHHH-----C---CCCHHHHHHHHCCCHHHHHHH T ss_conf 7999999999999-----6---998999999878688999999 No 159 >1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A* Probab=79.23 E-value=1.5 Score=22.07 Aligned_cols=50 Identities=6% Similarity=-0.018 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999999999986484121499999984887778763158988999999999 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) .+++-+.-...-.+.|+ |-.++|+.+|++++++.+|..++..+=...+-. T Consensus 15 ~~~l~~~l~~~R~~~gl---tQ~elA~~lGis~~~is~~E~G~~~~s~~~l~~ 64 (92) T 1lmb_3 15 ARRLKAIYEKKKNELGL---SQESVADKMGMGQSGVGALFNGINALNAYNAAL 64 (92) T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH T ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 99999999999999299---999999888878857999975999999999999 No 160 >3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Probab=79.10 E-value=1.8 Score=21.41 Aligned_cols=38 Identities=5% Similarity=0.083 Sum_probs=26.8 Q ss_pred HHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999986484-1214999999848877787631589889 Q T0596 16 AVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 16 A~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ..+++.++.. .+.|..++|+++||+++++.+|-.++.. T Consensus 18 lk~~~~~~r~~~gltq~~LA~~lGis~~~is~~e~g~~~ 56 (236) T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINA 56 (236) T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 999999999884999999999979799999999717650 No 161 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Probab=78.98 E-value=0.95 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 78999999999999986484121499999984887778763158 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+-|..+|. +..+. ++.|+.+||++.||++++||++-. T Consensus 8 ~EfK~~aV~----l~~~~--~G~s~~~vA~~lGIs~~tl~~W~r 45 (97) T 2jn6_A 8 EEFKRDAVA----LYENS--DGASLQQIANDLGINRVTLKNWII 45 (97) T ss_dssp HHHHHHHHH----HHTTG--GGSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHH----HHHHC--CCCCHHHHHHHHCCCCCCCHHHHH T ss_conf 999999999----99983--998599999997999350129999 No 162 >1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Probab=78.75 E-value=1.8 Score=21.36 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 1789999999999999864841214999999848877787631 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.|++|++.+ +. +.+..+||++.+|+.++++.. T Consensus 19 s~~~R~rIv~l~-----~~---G~s~~~Iar~l~Vs~~~V~ki 53 (128) T 1pdn_C 19 PNNIRLKIVEMA-----AD---GIRPCVISRQLRVSHGCVSKI 53 (128) T ss_dssp CHHHHHHHHHHH-----HT---TCCHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHHHH-----HC---CCCHHHHHHHHCCCHHHHHHH T ss_conf 899999999999-----86---999999999889689999999 No 163 >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} Probab=78.63 E-value=2.3 Score=20.59 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=39.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC---HH-HHHHHHHHHCCCHHHHHHH Q ss_conf 99971789999999999999864841---21-4999999848877787631 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWE---AV-RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~---~~-tv~~IA~~aGvs~~t~y~y 47 (213) ||.++.+.=.+|.++-.+.+....|. .+ |.+++|+..|||++|+..- T Consensus 23 ~~~~~~P~Y~qI~~~L~~~I~~G~l~pG~rLPSereLA~~lgVSR~TVr~A 73 (272) T 3eet_A 23 MTFGEQPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEA 73 (272) T ss_dssp ----CCCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999889999999999998399999399937999999989599999999 No 164 >2pg4_A Uncharacterized protein; NP_147569.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT; 2.21A {Aeropyrum pernix K1} SCOP: a.4.5.48 Probab=78.19 E-value=2.3 Score=20.59 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 99999999998648412149999998488777876315898899999 Q T0596 11 AIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 11 ~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) +|+-+-+ -|..+||+. |+.+|.++.|||..+||. +-|+.|+.+ T Consensus 16 rilptll-efekkgyep-slaeivkasgvsektffm--glkdrlira 58 (95) T 2pg4_A 16 RILPTLL-EFEKKGYEP-SLAEIVKASGVSEKTFFM--GLKDRLIRA 58 (95) T ss_dssp HHHHHHH-HHHHTTCCC-CHHHHHHHHCCCHHHHHT--THHHHHHHT T ss_pred HHHHHHH-HHHHCCCCC-CHHHHHHHCCCCHHHHHH--HHHHHHHHH T ss_conf 9988999-998626883-099999872853667754--448899995 No 165 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=77.14 E-value=2.2 Score=20.71 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 789999999999999864841214999999848877787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++|-+|+. .+.++| ..|+.+||+..|++++++++|... T Consensus 15 ~p~r~~Il~----~L~~~~--~~~~~eLa~~l~is~~~vs~~l~~ 53 (100) T 1ub9_A 15 NPVRLGIMI----FLLPRR--KAPFSQIQKVLDLTPGNLDSHIRV 53 (100) T ss_dssp SHHHHHHHH----HHHHHS--EEEHHHHHHHTTCCHHHHHHHHHH T ss_pred CHHHHHHHH----HHCCCC--CCCHHHHHHHHHHCCCCCHHHHHH T ss_conf 999999999----972678--961999999885268744199998 No 166 >3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} Probab=76.65 E-value=2.1 Score=20.85 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=33.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 999999999864841214999999848877787631589 Q T0596 12 IVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 12 Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++...+++.++--...|+.++|+.+|+|+.+|++.|+. T Consensus 170 ~~~~i~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fK~ 208 (276) T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES 208 (276) T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999857389999999999979799999999999 No 167 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Probab=75.26 E-value=1.6 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.4 Q ss_pred HCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 648412149999998488777876315898899999 Q T0596 22 HTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 22 e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) +.| .++.+||++-||+.+|||...+.|+.+... T Consensus 36 e~G---~s~~~vAre~gi~~sTl~~wvK~~~ki~~~ 68 (87) T 2elh_A 36 HDG---ESKASVARDIGVPESTLRGWCKNEDKLRFM 68 (87) T ss_dssp HHT---CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH T ss_pred HCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 979---989999999897887999999979999988 No 168 >1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2 Probab=75.17 E-value=1.2 Score=22.88 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999999999998648412149999998488777876315898 Q T0596 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ..|++-.++.+.++=-...|+.+||+.+|+|+.+|.+.|..- T Consensus 2 ~~~i~~~~~~i~~~~~~~~~l~~la~~~~~s~~~l~r~f~~~ 43 (292) T 1d5y_A 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (292) T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 689999999999705899999999999893999999999998 No 169 >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 Probab=74.37 E-value=1.6 Score=21.72 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=35.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9997178999999999999986484121499999984887778763158988 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) |+.+.++..-+.+..-..+-...+...+|..+||+..|++++++.++...-+ T Consensus 1 Msld~s~q~~~aL~~L~~~~~~~~~~~it~~eLa~~l~is~~tvsr~l~~Le 52 (230) T 3cta_A 1 MSLETDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLE 52 (230) T ss_dssp ------CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9976669999999999984520579986899999998888879999999999 No 170 >2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* Probab=74.27 E-value=2 Score=21.10 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 999999999999864841214999999848877787631589889999999999 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRA 62 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~ 62 (213) ...|-+.-..+=.++| .|..++|+.+||+++++.+|-.++...=...+..+ T Consensus 10 ~~~lg~~lr~~R~~~g---lsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~i 60 (88) T 2wiu_B 10 PTQLANAMKLVRQQNG---WTQSELAKKIGIKQATISNFENNPDNTTLTTFFKI 60 (88) T ss_dssp HHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHH T ss_pred HHHHHHHHHHHHHHCC---CCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 9999999999999859---99999978639989999999879999999999999 No 171 >1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Probab=74.27 E-value=1.9 Score=21.20 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=30.4 Q ss_pred CCHHHHHHHHHHHHHH--------HHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9717899999999999--------998648412149999998488777876315 Q T0596 3 INNDPMRDAIVDTAVE--------LAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~--------l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .+..++=..+++.... +|.-.=|.+.|..+||+..|+|.++++.+. T Consensus 6 ~e~~~~i~~L~d~y~~lL~~~qR~vi~L~~~~~ls~~EIA~~lgis~~~V~~~l 59 (113) T 1s7o_A 6 IEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNI 59 (113) T ss_dssp -CCCHHHHHHHHHHGGGSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999988439999999999999973129999999897999999999 No 172 >3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A Probab=73.82 E-value=2.8 Score=19.86 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 999999999999986484121499999984887778763158988999999999 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) .++.|=+.-..+-.++|+ |..++|+++||+++++.+|..++..+=...+.. T Consensus 25 ~~~~iG~~Lr~~R~~~gl---sq~~lA~~~gis~~~is~~E~G~~~ps~~~l~~ 75 (117) T 3f52_A 25 LREALGAALRSFRADKGV---TLRELAEASRVSPGYLSELERGRKEVSSELLAS 75 (117) T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 999999999999999598---999999886030778999975303276999999 No 173 >3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} Probab=73.11 E-value=1.5 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=20.7 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 412149999998488777876315 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ....|+.+||+++|||++|+.+.. T Consensus 33 ~~~~si~~lA~~~~vS~aTv~Rf~ 56 (107) T 3iwf_A 33 VVNMTSQEIANQLETSSTSIIRLS 56 (107) T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHCCHHHHHHHHCCCHHHHHHHH T ss_conf 977649999989698988999999 No 174 >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} Probab=71.53 E-value=4.2 Score=18.49 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 899999999999998648412149999998488777876315 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +.-+..|.+=..+-.++|+ +++.+||+..||+++++.... T Consensus 36 e~~EdYLe~Iy~L~~~~~~--vr~~dIA~~L~vs~~sV~~~l 75 (155) T 2h09_A 36 ELIDDYVELISDLIREVGE--ARQVDMAARLGVSQPTVAKML 75 (155) T ss_dssp HHHHHHHHHHHHHHHHHSC--CCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCC--CCHHHHHHHHCCCHHHHHHHH T ss_conf 5799999999999962897--609999999698877999999 No 175 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A Probab=71.38 E-value=3.1 Score=19.54 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=33.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999717899999999999998648412149999998488777876315898 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) |...=|+.-.+|+. ++.++| ..|+.+||++.|+|++++++....- T Consensus 1 M~~~lD~~D~~Il~----~L~~d~--R~s~~~ia~~lgls~~tv~~Ri~~L 45 (150) T 2w25_A 1 MNEALDDIDRILVR----ELAADG--RATLSELATRAGLSVSAVQSRVRRL 45 (150) T ss_dssp ---CCCHHHHHHHH----HHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 95057299999999----999848--9999999999890999999999998 No 176 >3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} Probab=70.63 E-value=4.4 Score=18.35 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 178999999999999986484121499999984887778763158988999 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) ++.+.+.|.+.-..+-.++|+ |..++|+.+|++.+++..+=.++..+- T Consensus 8 ~~~~~~~l~~~lk~~R~~~gl---tq~~lA~~~gis~~~i~~iE~G~~~~~ 55 (83) T 3f6w_A 8 HNARYQALLDLLLEARSAAGI---TQKELAARLGRPQSFVSKTENAERRLD 55 (83) T ss_dssp HHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHTTSSCCC T ss_pred CCHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 889999999999999998299---999999885389999999987998999 No 177 >1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A Probab=70.39 E-value=1.7 Score=21.56 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=26.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99986484121499999984887778763158988 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+..+.|+ |..++|+.+||+++++++|..+|. T Consensus 8 ~~r~~~~l---sq~ela~~~gvs~~ti~~~e~g~~ 39 (69) T 1r69_A 8 SKRIQLGL---NQAELAQKVGTTQQSIEQLENGKT 39 (69) T ss_dssp HHHHHTTC---CHHHHHHHHTSCHHHHHHHHTTSC T ss_pred HHHHHCCC---CHHHHHHHCCCCHHHHHHHHCCCC T ss_conf 99999499---999997850989999999987999 No 178 >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50 Probab=70.11 E-value=3 Score=19.63 Aligned_cols=32 Identities=6% Similarity=0.068 Sum_probs=24.5 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9986484121499999984887778763158988 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) |...+| ..|+.+||+..|+++++++++-..-+ T Consensus 30 L~~~~~--~lt~~ela~~l~i~~~tv~~~l~~L~ 61 (109) T 2d1h_A 30 MVEIEK--PITSEELADIFKLSKTTVENSLKKLI 61 (109) T ss_dssp HHHHCS--CEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHCCC--CCCHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 998496--98999999997887234999999999 No 179 >2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A Probab=69.83 E-value=2 Score=21.00 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 21499999984887778763158988999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) -.||.++|+..|||..|+.|| .+.+|+ T Consensus 11 ~~tIGevA~~~gvs~~TLR~Y--E~~GLl 37 (154) T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFY--ESKGLI 37 (154) T ss_dssp CBCHHHHHHHHTSCHHHHHHH--HHTTSS T ss_pred CCCHHHHHHHHCCCHHHHHHH--HHCCCC T ss_conf 626999999988699999999--988899 No 180 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=69.81 E-value=3.4 Score=19.26 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=22.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .++.++| .+|+.+||+..|++++++|..- T Consensus 27 ~~L~~~~--~~t~~eia~~~~~~~~~v~~~l 55 (109) T 1sfx_A 27 SLLLERG--GMRVSEIARELDLSARFVRDRL 55 (109) T ss_dssp HHHHHHC--CBCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHCCC--CCCHHHHHHHHCCCCCHHHHHH T ss_conf 9998048--8879999999756701899999 No 181 >3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Probab=69.31 E-value=2 Score=20.97 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) ..||.++|+..|||+.|+.+| T Consensus 2 ~mtI~evA~~~Gvs~~tLRyY 22 (142) T 3gp4_A 2 SLNIKEASEKSGVSADTIRYY 22 (142) T ss_dssp CBCHHHHHHHHTSCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 513999999989599999999 No 182 >1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} Probab=69.23 E-value=2 Score=20.95 Aligned_cols=23 Identities=22% Similarity=-0.019 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 21499999984887778763158 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) =+++.+|++..|+|++|+|++-. T Consensus 10 ll~~keV~~~~g~srstiy~~~~ 32 (66) T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIK 32 (66) T ss_dssp EECHHHHHHHHSSCHHHHHHHHH T ss_pred EECHHHHHHHHCCCHHHHHHHHH T ss_conf 16499999997978999866731 No 183 >3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} Probab=68.98 E-value=3 Score=19.59 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=31.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 9999986484121499999984887778763158988999999999 Q T0596 16 AVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 16 A~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) -..+..++|+ |..++|+.+|++++++.+|..++...=...+.. T Consensus 15 ik~~r~~~gl---sq~~lA~~~gvs~~~is~~e~g~~~p~~~~l~~ 57 (76) T 3bs3_A 15 IKVVLAEKQR---TNRWLAEQMGKSENTISRWCSNKSQPSLDMLVK 57 (76) T ss_dssp HHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHH T ss_pred HHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 9999999399---899999998989999999986998999999999 No 184 >1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A Probab=68.73 E-value=2.2 Score=20.77 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=21.4 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) .+|.++|+..|||+.|+.|| .+.+|+ T Consensus 1 M~IgElA~~~gvs~~tlRyY--e~~GLl 26 (135) T 1q06_A 1 MNISDVAKITGLTSKAIRFY--EEKGLV 26 (135) T ss_dssp CCHHHHHHHHTCCHHHHHHH--HHTTCS T ss_pred CCHHHHHHHHCCCHHHHHHH--HHCCCC T ss_conf 97899999989199999999--987898 No 185 >2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} Probab=68.50 E-value=0.91 Score=23.70 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=28.1 Q ss_pred HHHHHHHH---HHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999---86484121499999984887778763158988 Q T0596 13 VDTAVELA---AHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~---~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++-++.++ .+. -..+|+.+|+++.|++++|+|++..+-. T Consensus 13 l~Ral~ILe~l~~~-~~~~t~~eia~~l~l~~st~~rlL~tL~ 54 (257) T 2g7u_A 13 IERGFAVLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQ 54 (257) T ss_dssp HHHHHHHHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999857-9998999999997929999999999999 No 186 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 Probab=68.29 E-value=4.9 Score=18.00 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=32.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 99971789999999999999864841214999999848877787631589 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) |...=|+.-.+|+.. +.++| ..|+.+||+..|+|.+++.+.... T Consensus 1 m~~~lD~~D~~IL~~----L~~n~--R~s~~~iA~~lg~S~~tv~~Ri~~ 44 (151) T 2cyy_A 1 MRVPLDEIDKKIIKI----LQNDG--KAPLREISKITGLAESTIHERIRK 44 (151) T ss_dssp CCCCCCHHHHHHHHH----HHHCT--TCCHHHHHHHHCSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH----HHHCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 978770999999999----99748--999999999989298999999999 No 187 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=67.96 E-value=2.6 Score=20.17 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.4 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 999986484121499999984887778763158988999 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) ..+|.-+-+++.|..+||+..|+|+++++.+..--...+ T Consensus 31 r~v~~l~~~~~ls~~EIA~~lgiS~~~V~~~l~Ra~~~L 69 (113) T 1xsv_A 31 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113) T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999999998286599999998969999999999999999 No 188 >1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Probab=67.96 E-value=2.1 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.2 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 12149999998488777876315898 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+.|..+||...|+|..|+..|..+- T Consensus 25 ~G~s~~eIA~~l~is~~TV~~~~~~i 50 (74) T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNA 50 (74) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 27999999999689877999999999 No 189 >3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} Probab=67.92 E-value=4.1 Score=18.61 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 2149999998488777876315898899 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) ..|+.+||+..|+|+..|++.|...-++ T Consensus 19 ~l~l~~lA~~~~~s~~~l~r~fk~~~g~ 46 (103) T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103) T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSS T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 9899999999891999999999998891 No 190 >1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* Probab=67.76 E-value=2 Score=20.96 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=26.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99986484121499999984887778763158988 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+..+.|+ |..++|+.+||+++++.+|..++. T Consensus 10 ~~r~~~gl---sq~~lA~~~Gis~~~is~~e~g~~ 41 (71) T 1zug_A 10 KRRIALKM---TQTELATKAGVKQQSIQLIEAGVT 41 (71) T ss_dssp HHHHHTTC---CHHHHHHHHTSCHHHHHHHHTTCC T ss_pred HHHHHCCC---CHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 99998499---999999997158999999987999 No 191 >2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Probab=67.24 E-value=3 Score=19.63 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) |+.-.+||. ++.++ +..|.++||++.|+|++++.+....- T Consensus 16 D~~D~~IL~----~L~~d--~R~s~~eIA~~lglS~~tV~~Ri~rL 55 (171) T 2ia0_A 16 DDLDRNILR----LLKKD--ARLTISELSEQLKKPESTIHFRIKKL 55 (171) T ss_dssp CHHHHHHHH----HHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CHHHHHHHH----HHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999999----99984--89999999999890999999999999 No 192 >1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A Probab=67.14 E-value=2.5 Score=20.27 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.7 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) -|+.++|+..|||+.|+.+|= |.+|+ T Consensus 3 ytI~e~a~~~gvs~~tlR~Ye--~~GLl 28 (109) T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYD--NIELL 28 (109) T ss_dssp BCHHHHHHHHSCCHHHHHHHH--HTTSS T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 119999999895999999998--76898 No 193 >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Probab=67.10 E-value=3.5 Score=19.14 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 789999999999999864841214999999848877787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +++|-+|+.. +.+ | ..|+.+|++..|++.+++++|..- T Consensus 24 ~p~Rl~Il~~----L~~-~--~~~v~eLa~~l~is~stvS~HL~~ 61 (108) T 2kko_A 24 NGRRLQILDL----LAQ-G--ERAVEAIATATGMNLTTASANLQA 61 (108) T ss_dssp TSTTHHHHHH----HTT-C--CEEHHHHHHHHTCCHHHHHHHHHH T ss_pred CHHHHHHHHH----HHC-C--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999----981-9--978999999989099999999999 No 194 >1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=67.02 E-value=2.2 Score=20.68 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=27.9 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 99998648412149999998488777876315898899 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) .++..++|+ |..++|+.+|++++++..|..++... T Consensus 11 k~lR~~~gl---tq~~lA~~~gis~~~i~~~e~g~~~p 45 (76) T 1adr_A 11 RARRKKLKI---RQAALGKMVGVSNVAISQWERSETEP 45 (76) T ss_dssp HHHHHHHTC---CHHHHHHHHTSCHHHHHHHHTTSSCC T ss_pred HHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999999199---99999999894999999999699899 No 195 >1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 Probab=66.81 E-value=2.6 Score=20.17 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=23.7 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 99864841214999999848877787631589 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +-.++| .|..++|+.+||++++++.|=.+ T Consensus 9 ~R~~~g---lsq~eLa~~~gis~~~is~~E~g 37 (111) T 1b0n_A 9 YRKEKG---YSLSELAEKAGVAKSYLSSIERN 37 (111) T ss_dssp HHHHTT---CCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHCC---CCHHHHHHHHCCCHHHHHHHHCC T ss_conf 999849---99999987869899999999879 No 196 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=66.49 E-value=2.5 Score=20.31 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=29.1 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHH-----CCCHHHHHHHHHHH Q ss_conf 41214999999848877787631-----58988999999999 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLY-----FREKDELIDAWFDR 61 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~y-----F~sKe~L~~a~~~~ 61 (213) ....|+.+||+++|||.+|+.+. |.+-.++-..+... T Consensus 37 v~~~si~~lA~~~~vS~sTI~Rf~kkLG~~Gf~efk~~l~~~ 78 (111) T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVAGD 78 (111) T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 644689999989798988999999994779899999999999 No 197 >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} Probab=66.40 E-value=0.95 Score=23.54 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=28.9 Q ss_pred HHHHHHHH---HHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999---86484121499999984887778763158988 Q T0596 13 VDTAVELA---AHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~---~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++-+++++ .+.+ ...|+.+||++.|++++|+|++..+-. T Consensus 22 l~r~l~ILe~l~~~~-~~lsl~eia~~lgl~kst~~RlL~tL~ 63 (260) T 2o0y_A 22 VTRVIDLLELFDAAH-PTRSLKELVEGTKLPKTTVVRLVATMC 63 (260) T ss_dssp HHHHHHHHTTCBTTB-SSBCHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999998479-998999999997919899999999999 No 198 >3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis} Probab=66.33 E-value=3 Score=19.62 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=24.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++|.-+-|.+.|..+||+..|+|.++++.+. T Consensus 44 ~vl~l~~~~~~s~~EIA~~lgis~~~v~~~~ 74 (92) T 3hug_A 44 AVIQRSYYRGWSTAQIATDLGIAEGTVKSRL 74 (92) T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999949999999999896999999999 No 199 >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 Probab=66.33 E-value=3 Score=19.62 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) |+...+|+ +++.++| ..|+.+||++.|+|+++++++...- T Consensus 4 D~~D~~Il----~~L~~n~--R~s~~eia~~~g~s~~tv~~Ri~rL 43 (144) T 2cfx_A 4 DQIDLNII----EELKKDS--RLSMRELGRKIKLSPPSVTERVRQL 43 (144) T ss_dssp CHHHHHHH----HHHHHCS--CCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHH----HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 88999999----9999848--9999999999885888999999987 No 200 >1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12 Probab=66.26 E-value=5.3 Score=17.71 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=20.7 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 98648412149999998488777876315 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +.+.|. ++..-|+.+||++.|||+.- T Consensus 50 L~~~~G---N~s~AAr~LGIsR~TLyrkl 75 (81) T 1umq_A 50 YEMCDR---NVSETARRLNMHRRTLQRIL 75 (81) T ss_dssp HHHTTS---CHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHH---HHHHHHHHHCCCHHHHHHHH T ss_conf 999983---09999999698999999999 No 201 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Probab=65.60 E-value=4.8 Score=18.07 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 78999999999999986484121499999984887778763158 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) |+.-.+|+.. +.++| ..|+.+||++.|+|.+++++... T Consensus 7 D~~D~~Il~~----L~~d~--R~s~~eia~~~g~s~~tv~~Ri~ 44 (152) T 2cg4_A 7 DNLDRGILEA----LMGNA--RTAYAELAKQFGVSPETIHVRVE 44 (152) T ss_dssp CHHHHHHHHH----HHHCT--TSCHHHHHHHHTSCHHHHHHHHH T ss_pred CHHHHHHHHH----HHHCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7999999999----99858--99999999998877589999999 No 202 >3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} Probab=65.27 E-value=2.7 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=21.2 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) .|+.++|+..|||+.|+.+| .+.+|+ T Consensus 17 ytIgevA~~~gvs~~tLRyY--E~~GLl 42 (148) T 3gpv_A 17 YTIGQVAKMQHLTISQIRYY--DKQGLF 42 (148) T ss_dssp BCHHHHHHHTTCCHHHHHHH--HHTTCC T ss_pred CCHHHHHHHHCCCHHHHHHH--HHCCCC T ss_conf 76999999989498899999--986998 No 203 >2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans} Probab=64.62 E-value=3 Score=19.69 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=20.5 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) -|+.++|+.+||++.|+.||= |.+|+ T Consensus 2 ytI~e~a~~~gvs~~tlR~Ye--~~GLl 27 (108) T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYD--DIGLL 27 (108) T ss_dssp BCHHHHHHHHTCCHHHHHHHH--HHTSS T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 518999999894999999987--53786 No 204 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Probab=63.87 E-value=5.7 Score=17.48 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 999998648412149999998488777876315 Q T0596 16 AVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 16 A~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .+..+...+-+++|+.+||+..|++++++-+.- T Consensus 36 iL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v 68 (139) T 3eco_A 36 TLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLL 68 (139) T ss_dssp HHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999559999799999999896888999999 No 205 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A* Probab=63.72 E-value=4 Score=18.68 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=30.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 71789999999999999864841214999999848877787631589 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +=|+.-.+||.. +.++| ..|+.+||++.|+|.+++.+.... T Consensus 24 ~LD~~D~~IL~~----L~~d~--R~s~~eiA~~lglS~~tV~~Ri~r 64 (171) T 2e1c_A 24 PLDEIDKKIIKI----LQNDG--KAPLREISKITGLAESTIHERIRK 64 (171) T ss_dssp CCCHHHHHHHHH----HHHCT--TCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCHHHHHHHHH----HHHCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 847999999999----99838--999999999989099999999999 No 206 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Probab=63.52 E-value=5.6 Score=17.50 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=27.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 9999999986484121499999984887778763158 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +=..+--+.+.|..--|+..||+++|+++.+++.+-. T Consensus 37 vll~l~~~~~~g~~~PS~~~La~~~g~s~~tv~~~l~ 73 (135) T 2v79_A 37 LLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLR 73 (135) T ss_dssp HHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999987598798999999896959999999999 No 207 >2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation, two-component regulatory system; NMR {Bacillus subtilis} Probab=62.92 E-value=3.4 Score=19.22 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=21.2 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1214999999848877787631589 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+.|..+||+..|+|..|+.+|..+ T Consensus 26 ~G~t~~eIA~~l~iS~~TV~~~~~~ 50 (73) T 2krf_A 26 KGFTNQEIADALHLSKRSIEYSLTS 50 (73) T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 4899999987868887899999999 No 208 >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} Probab=62.82 E-value=4.3 Score=18.45 Aligned_cols=40 Identities=8% Similarity=0.142 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHCCCHHHHHHHCCCH Q ss_conf 789999999999999864841214999999--8488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAA--RLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~--~aGvs~~t~y~yF~sK 51 (213) ++++++||+ ++.++| ..|..+||. ..|+++.++.+|..-- T Consensus 12 ~~~d~rILe----~L~~~g--~~t~~elA~~~~lgis~~~Vs~hL~~L 53 (111) T 3b73_A 12 TIWDDRILE----IIHEEG--NGSPKELEDRDEIRISKSSVSRRLKKL 53 (111) T ss_dssp CHHHHHHHH----HHHHHS--CBCHHHHHTSTTCCSCHHHHHHHHHHH T ss_pred CHHHHHHHH----HHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 337999999----999859--988999987705798999999999999 No 209 >1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A Probab=62.79 E-value=3 Score=19.68 Aligned_cols=40 Identities=18% Similarity=0.014 Sum_probs=29.4 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 9986484121499999984887778763158988999999999 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) +-.++|+ |..++|+.+|++++++.+|-.++...=...+.. T Consensus 9 ~R~~~~l---tq~~la~~~gis~~~is~~E~g~~~ps~~~l~~ 48 (66) T 1utx_A 9 IREKKKI---SQSELAALLEVSRQTINGIEKNKYNPSLQLALK 48 (66) T ss_dssp HHHHTTC---CHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHH T ss_pred HHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 9998599---999999975969999999987997899999999 No 210 >2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A Probab=62.42 E-value=4 Score=18.70 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=30.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH Q ss_conf 9998648412149999998488777876315898899999999 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFD 60 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~ 60 (213) ++..+.| .|-.++|+..||++.++..+-.+|..+=..++- T Consensus 15 ~~~~~~g---lsq~~lA~~lgvs~~~is~ie~G~~~~s~~~~~ 54 (94) T 2ict_A 15 ESLDELN---VSLREFARAMEIAPSTASRLLTGKAALTPEMAI 54 (94) T ss_dssp HHHHHHT---CCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHH T ss_pred HHHHHCC---CCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHH T ss_conf 9999969---999999999687758899998464337699999 No 211 >3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} Probab=62.33 E-value=3.5 Score=19.16 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=20.8 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) -||.++|+..|||+.|+.||= |.+|+ T Consensus 5 Y~Igeva~~~gvs~~TLRyYE--~~GLl 30 (146) T 3hh0_A 5 WLISEFASVGDVTVRALRYYD--KINLL 30 (146) T ss_dssp BCHHHHHHHHTCCHHHHHHHH--HTTSS T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 749999999894989999999--87898 No 212 >3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Probab=62.19 E-value=3.5 Score=19.08 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 2149999998488777876315898 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +.|..+||++.|+|..|+.+|..+- T Consensus 42 G~s~~eIA~~L~iS~~TV~~~~~~i 66 (95) T 3c57_A 42 GLTNKQIADRMFLAEKTVKNYVSRL 66 (95) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7999999989796999999999999 No 213 >1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} Probab=62.02 E-value=3.5 Score=19.11 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=21.8 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 41214999999848877787631589 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) -.+.|..+||+..|+|..|+.+|..+ T Consensus 29 ~~G~s~~eIA~~L~iS~~TV~~h~~~ 54 (79) T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRAN 54 (79) T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHH T ss_pred HHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 93699999988989789999999999 No 214 >1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Probab=61.83 E-value=3.7 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.2 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1214999999848877787631589 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+.|..+||++.|+|..|+..|-.+ T Consensus 35 ~G~s~~eIA~~l~iS~~TV~~~~~~ 59 (82) T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKH 59 (82) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2899999976848889999999999 No 215 >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=61.62 E-value=3.5 Score=19.10 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=24.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 999864841214999999848877787631589 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .++.++ ...|+.+||+..|+|.+++++...- T Consensus 10 ~~L~~d--~R~s~~eiA~~lglS~~tv~~Ri~r 40 (162) T 3i4p_A 10 RILQED--STLAVADLAKKVGLSTTPCWRRIQK 40 (162) T ss_dssp HHHTTC--SCSCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999985--8999999999989199999999999 No 216 >2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} Probab=60.60 E-value=2.2 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHCCCCH Q ss_conf 99999999998648412 Q T0596 11 AIVDTAVELAAHTSWEA 27 (213) Q Consensus 11 ~Il~AA~~l~~e~G~~~ 27 (213) .|.++...++..-||+. T Consensus 22 ~l~~~l~~~~~~~Gf~~ 38 (236) T 2q0o_A 22 MIKIALRSFAHSCGYDR 38 (236) T ss_dssp HHHHHHHHHHHHHTCCE T ss_pred HHHHHHHHHHHHCCCCE T ss_conf 99999999999839887 No 217 >1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2 Probab=60.51 E-value=3.7 Score=18.89 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.1 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1214999999848877787631589 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+.|..+||+..|+|..|+.+|..+ T Consensus 48 ~G~s~~eIA~~L~iS~~TV~~~~~~ 72 (99) T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKS 72 (99) T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2899999998979699999999999 No 218 >2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Probab=60.50 E-value=2.7 Score=19.98 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 214999999848877787631589 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +.|..+||++.|+|..|+..|..+ T Consensus 13 G~s~~eIA~~l~iS~~TV~~~~~~ 36 (61) T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMN 36 (61) T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 799999998969999999999999 No 219 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A Probab=60.04 E-value=2.9 Score=19.78 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 78999999999999986484121499999984887778763158988 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) |+.-.+|++. +.+. +..|.++||++.|+|.+++++++..-+ T Consensus 9 D~~D~~Il~~----L~~d--~R~s~~eia~~~gls~~tv~~Ri~~L~ 49 (162) T 2p5v_A 9 DKTDIKILQV----LQEN--GRLTNVELSERVALSPSPCLRRLKQLE 49 (162) T ss_dssp CHHHHHHHHH----HHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred CHHHHHHHHH----HHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 8999999999----9983--899999999998919999999999998 No 220 >3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} Probab=59.85 E-value=3.3 Score=19.34 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=32.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99986484121499999984887778763158988999999999 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) ++..++|+ |..++|+.+||++.++..+-.+|..+=..++.. T Consensus 25 e~~~~~gl---sq~eLA~~lGis~~~is~ie~G~~~~s~e~a~~ 65 (104) T 3cec_A 25 DILDDLDI---NTANFAEILGVSNQTIQEVINGQRSITVDIAIR 65 (104) T ss_dssp HHHHHHTC---CHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH T ss_pred HHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 99998799---899999996867999999982886787999999 No 221 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=59.75 E-value=6.8 Score=16.86 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=36.6 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 717899999999999998648412149999998488777876315898 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +.++.|+.=...-++++.++| .+|-.+||+..|+|++|+.+....- T Consensus 9 ~~~~ir~~N~~~il~~i~~~g--~~SR~ela~~~gLs~~Tvs~iv~~L 54 (406) T 1z6r_A 9 HIDQIKQTNAGAVYRLIDQLG--PVSRIDLSRLAQLAPASITKIVHEM 54 (406) T ss_dssp ---CHHHHHHHHHHHHHHSSC--SCCHHHHHHHTTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999999999999999859--9189999988795999999999999 No 222 >2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622} Probab=59.53 E-value=3.4 Score=19.21 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.7 Q ss_pred CHHHHHHHHHHHCCCHHHHHHH Q ss_conf 1214999999848877787631 Q T0596 26 EAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~y 47 (213) -..||.++|+..||+..++.+| T Consensus 4 ~~~~I~eva~~~gvs~~tlR~y 25 (81) T 2jml_A 4 MTLRIRTIARMTGIREATLRAW 25 (81) T ss_dssp CCEEHHHHHHTTSTTHHHHHHH T ss_pred CEEEHHHHHHHHCCCHHHHHHH T ss_conf 4355999999988499999999 No 223 >3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} Probab=59.00 E-value=3.7 Score=18.89 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=28.0 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999998648412149999998488777876315898899 Q T0596 16 AVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 16 A~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) -..+-.++|+ |..++|+..|++++++.+|-.++... T Consensus 16 ik~~R~~~gl---sq~~la~~~gis~~~i~~~E~G~~~~ 51 (82) T 3clc_A 16 IKKIRLEKGM---TQEDLAYKSNLDRTYISGIERNSRNL 51 (82) T ss_dssp HHHHHHHTTC---CHHHHHHHHTSCHHHHHHHHTTCCCC T ss_pred HHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 9999998299---99999878399897999998699899 No 224 >1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A Probab=58.78 E-value=4.5 Score=18.27 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=17.8 Q ss_pred CHHHHHHHHHHH-CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 121499999984-8877787631589889999999999999998875 Q T0596 26 EAVRLYDIAARL-AVSLDEIRLYFREKDELIDAWFDRADSRMLKEAE 71 (213) Q Consensus 26 ~~~tv~~IA~~a-Gvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~ 71 (213) +.-...+|.++- +.=....++|.++.+ ...++......++.... T Consensus 21 d~~A~~~l~~~y~~~l~~~~~~~~~~~d--aeDl~qe~~~~l~~~~~ 65 (194) T 1or7_A 21 DQKAFNLLVVRYQHKVASLVSRYVPSGD--VPDVVQEAFIKAYRALD 65 (194) T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTSCGGG--HHHHHHHHHHHHHHHGG T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCH T ss_conf 8999999999999999999999869614--99999999999998566 No 225 >2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} Probab=58.26 E-value=7.2 Score=16.68 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 21499999984887778763158988999999999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) +.|..++|+.+|||++++.+|-.++...=...+.. T Consensus 14 glsq~elA~~~gis~~tis~~E~G~~~ps~~~l~~ 48 (158) T 2p5t_A 14 DLTQLEFARIVGISRNSLSRYENGTSSVSTELIDI 48 (158) T ss_dssp ----------------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 99999999997979999999987987899999999 No 226 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=58.17 E-value=7.2 Score=16.67 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=22.9 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99998648412149999998488777876315 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +..+.++| ++|+.+||+..|++++++.+.- T Consensus 37 L~~l~~~~--~~t~~ela~~l~i~~~~vs~~v 66 (145) T 3g3z_A 37 LYTLATEG--SRTQKHIGEKWSLPKQTVSGVC 66 (145) T ss_dssp HHHHHHHC--SBCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999869--9499999999897898999999 No 227 >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Probab=57.84 E-value=7.3 Score=16.63 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=27.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 99999864841214999999848877787631589 Q T0596 16 AVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 16 A~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+--|.+.|..--|+..||+++|+++.+++.+-.+ T Consensus 40 ~l~~~~~~~~~~PS~~~LA~~~g~s~~~v~~~l~~ 74 (128) T 2vn2_A 40 HMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRR 74 (128) T ss_dssp HHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999866999999999998979299999999999 No 228 >3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A Probab=57.73 E-value=4 Score=18.70 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=28.7 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 9999998648412149999998488777876315898899 Q T0596 15 TAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 15 AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) .-..+-.++|+ |..++|+++|++++++.+|-.++... T Consensus 32 ~lk~lR~~~gl---Sq~elA~~~gis~~~is~iE~G~~~p 68 (99) T 3g5g_A 32 VIKKIRLEKGM---TQEDLAYKSNLDRTYISGIERNSRNL 68 (99) T ss_dssp HHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCSCC T ss_pred HHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99999999099---99999999895999999998157899 No 229 >2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} Probab=57.72 E-value=5.4 Score=17.67 Aligned_cols=32 Identities=22% Similarity=0.086 Sum_probs=24.9 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99998648412149999998488777876315 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .++|.=.=+.+.|..+||+..|++.+|+-.+. T Consensus 21 r~v~~l~~~~g~s~~EIA~~l~is~~tvk~~l 52 (70) T 2o8x_A 21 REALLLTQLLGLSYADAAAVCGCPVGTIRSRV 52 (70) T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999899909999999999897999999999 No 230 >1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 Probab=57.72 E-value=7.3 Score=16.62 Aligned_cols=32 Identities=19% Similarity=-0.040 Sum_probs=23.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999999986484121499999984887778763158 Q T0596 14 DTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 14 ~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+...+. +.|+ |..+||+..|.+++.+++|-. T Consensus 43 ~~~~~l~-~~g~---t~~eiA~~lg~s~s~v~~~l~ 74 (178) T 1r71_A 43 DFIGREL-AKGK---KKGDIAKEIGKSPAFITQHVT 74 (178) T ss_dssp HHHHHHH-HTTC---CHHHHHHHHTCCHHHHHHHHG T ss_pred HHHHHHH-HCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999-8389---899999998889999999999 No 231 >2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L Probab=57.65 E-value=4.1 Score=18.55 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=27.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 99986484121499999984887778763158988999 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) .+-.++| .|..++|+.+|++++++.++-.++...- T Consensus 12 ~~R~~~g---lsq~ela~~~gi~~~~i~~~E~g~~~p~ 46 (68) T 2r1j_L 12 ARRKKLK---IRQAALGKMVGVSNVAISQWERSETEPN 46 (68) T ss_dssp HHHHHHT---CCHHHHHHHHTSCHHHHHHHHTTSSCCB T ss_pred HHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 9999929---9999999897969999999987998999 No 232 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=57.62 E-value=6.9 Score=16.81 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=17.9 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99998648412149999998488777876315 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +..+.++| ++|+.+||++.|++++++.+.. T Consensus 51 L~~l~~~~--~~~~~ela~~l~i~~~tvs~~l 80 (168) T 2nyx_A 51 LVILSNHG--PINLATLATLLGVQPSATGRMV 80 (168) T ss_dssp HHHHHHHC--SEEHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 99998779--9899999999896998999999 No 233 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=57.37 E-value=7.4 Score=16.57 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=19.5 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9864841214999999848877787631 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) +.+.| ...|+.+||+..|++++++.+. T Consensus 44 L~~~~-~~~t~~ela~~l~i~~~tvs~~ 70 (147) T 2hr3_A 44 IDRLG-GDVTPSELAAAERMRSSNLAAL 70 (147) T ss_dssp HHHTT-SCBCHHHHHHHTTCCHHHHHHH T ss_pred HHHCC-CCCCHHHHHHHHCCCHHHHHHH T ss_conf 99669-9979999999989798689999 No 234 >2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor A3} Probab=57.36 E-value=4.7 Score=18.15 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=17.0 Q ss_pred HHHHHHHHHCCCHHHHHHH Q ss_conf 4999999848877787631 Q T0596 29 RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~y 47 (213) .|.++|+..|||..++.+| T Consensus 2 rI~elA~~~Gvs~~tlR~y 20 (222) T 2dg6_A 2 RLADLSKRSGVSTATIKYY 20 (222) T ss_dssp CHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 6899999989298999999 No 235 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Probab=57.21 E-value=5.5 Score=17.57 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.6 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 9998648412149999998488777876315898 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .++.++ ...|+.+||++.|+|++++++....- T Consensus 11 ~~L~~~--~r~s~~~ia~~~gls~~~v~~Ri~~L 42 (141) T 1i1g_A 11 EILEKD--ARTPFTEIAKKLGISETAVRKRVKAL 42 (141) T ss_dssp HHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999985--89899999999890999999999998 No 236 >2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1 Probab=57.13 E-value=4.9 Score=17.99 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=10.7 Q ss_pred HHHHHHHHHCCCHHHHHHHCCC Q ss_conf 4999999848877787631589 Q T0596 29 RLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~yF~s 50 (213) |-.++|+..|||+.++.+|=.+ T Consensus 105 tQ~~lA~~lGvs~~ti~~~E~G 126 (170) T 2auw_A 105 SLTTAAEALGISRRMVSYYRTA 126 (170) T ss_dssp CHHHHHHHHTSCHHHHHHHHTT T ss_pred CHHHHHHHHCCCHHHHHHHHCC T ss_conf 9999999949999999999779 No 237 >2v4j_C Sulfite reductase, dissimilatory-type subunit gamma; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.203.1.1 Probab=57.06 E-value=7.5 Score=16.54 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 789999999999999864841214999999848877787631589889 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ++..-.|+....+.+.+.|..- +++.+++..|...+.+|.-|++.-. T Consensus 43 t~~Hw~vI~~lR~~y~~~~~~P-~~R~l~k~~~~~~~~L~~LFp~~Pa 89 (105) T 2v4j_C 43 SPDHQKIIDFLQDYYKKNGIAP-MVRILSKNTGFKLKEVYELFPSGPG 89 (105) T ss_dssp CHHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHCCCHHHHHHHSTTHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHCCCCHH T ss_conf 8999999999999999958997-1999999855217799998699999 No 238 >3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Probab=56.14 E-value=5.2 Score=17.77 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=25.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99986484121499999984887778763158988 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+-.++|+ |..++|+.+|||++++..|=.++. T Consensus 19 ~lR~~~gl---tq~elA~~~gvs~~~is~~E~G~~ 50 (126) T 3ivp_A 19 EARKKQGL---TREQVGAMIEIDPRYLTNIENKGQ 50 (126) T ss_dssp HHHHHTTC---CHHHHHHHHTCCHHHHHHHHHSCC T ss_pred HHHHHCCC---CHHHHHHHCCCCHHHHHHHHCCCC T ss_conf 99998399---999997742998858999974877 No 239 >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* Probab=55.40 E-value=3.9 Score=18.78 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=25.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 9998648412149999998488777876315898 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++.++| ..|..+||++.|+|.+++.+...-- T Consensus 10 ~~L~~d~--r~s~~~ia~~~g~s~~tv~~Ri~rL 41 (150) T 2pn6_A 10 KILQYNA--KYSLDEIAREIRIPKATLSYRIKKL 41 (150) T ss_dssp HHHTTCT--TSCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999838--9999999999891999999999999 No 240 >2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A Probab=55.40 E-value=4.9 Score=17.97 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=23.6 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 9999864841214999999848877787631589 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .++=.-+--.+.|+.++|+++|||++++-..=.+ T Consensus 13 ~rir~~R~~~~ltl~~LA~~~GvS~~~lS~iE~G 46 (198) T 2bnm_A 13 ELLKDRREQVKMDHAALASLLGETPETVAAWENG 46 (198) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9999999985999999999979899999999849 No 241 >1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A Probab=55.19 E-value=6.7 Score=16.92 Aligned_cols=37 Identities=5% Similarity=0.152 Sum_probs=25.3 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH----HHHHHHHH Q ss_conf 98648412149999998488777876315898----89999999 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIRLYFREK----DELIDAWF 59 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK----e~L~~a~~ 59 (213) +..+| +|++.|++.+|++.+|+.+-+.-. |.++...+ T Consensus 18 L~krG---~sLa~lsr~~Gls~stl~nal~rp~pkgEriIA~aL 58 (74) T 1neq_A 18 LKKRK---LSLSALSRQFGYAPTTLANALERHWPKGEQIIANAL 58 (74) T ss_dssp HHTTS---CCHHHHHHHHSSCHHHHHHTTTSSCHHHHHHHHHHT T ss_pred HHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99968---879999999099878999988377807999999997 No 242 >2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3 Probab=55.04 E-value=5.6 Score=17.53 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=25.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999999998648412149999998488777876315898 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +..-++-+. + +.|+.++|+++||+++++.++=.+| T Consensus 17 lG~~ir~~R-~---~~s~~elA~~~Gvs~~~is~iE~G~ 51 (86) T 2ofy_A 17 LGELLRSAR-G---DMSMVTVAFDAGISVETLRKIETGR 51 (86) T ss_dssp HHHHHHHHH-T---TSCHHHHHHHHTCCHHHHHHHHTTC T ss_pred HHHHHHHHH-H---CCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 999999999-8---5999999999895999999998699 No 243 >1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Probab=55.01 E-value=7.4 Score=16.57 Aligned_cols=30 Identities=3% Similarity=0.159 Sum_probs=25.6 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 484121499999984887778763158988 Q T0596 23 TSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 23 ~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .-.+.-.+.+||+..|+++..|-.+|-++- T Consensus 44 ~~p~~~~~~~la~~~gl~~~~v~vWF~N~R 73 (80) T 1wh5_A 44 QRQDDEVIQRFCQETGVPRQVLKVWLHNNK 73 (80) T ss_dssp CTTTHHHHHHHHHHSCCCHHHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHCCCHHHEEEECCCCC T ss_conf 697999999999996898889523040276 No 244 >1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A* Probab=54.44 E-value=3.2 Score=19.39 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=5.1 Q ss_pred HHHHHHHHCCC Q ss_conf 99999984887 Q T0596 30 LYDIAARLAVS 40 (213) Q Consensus 30 v~~IA~~aGvs 40 (213) +.++++..|+. T Consensus 25 l~~~~~~~Gf~ 35 (234) T 1l3l_A 25 LADIADHFGFT 35 (234) T ss_dssp HHHHHHHTTCS T ss_pred HHHHHHHCCCC T ss_conf 99999987998 No 245 >2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus} Probab=54.08 E-value=8.3 Score=16.19 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH Q ss_conf 99999999999864841214999999848877787 Q T0596 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEI 44 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~ 44 (213) ..|...-+..+.+.||=..++.+||+..|++...+ T Consensus 31 ~~Ia~~lI~~LD~~GyL~~~~~eia~~l~~~~~~v 65 (76) T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVLRCSVEEL 65 (76) T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHH T ss_conf 99999999745988875889999999979099999 No 246 >3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} Probab=54.02 E-value=5.8 Score=17.40 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=18.4 Q ss_pred HHHHHHHHHHCCCHHHHHHHC Q ss_conf 149999998488777876315 Q T0596 28 VRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF 48 (213) -++...|+.+|+++.++|+.. T Consensus 33 gn~~~aA~~Lgi~r~tL~~kl 53 (63) T 3e7l_A 33 YDLKRTAEEIGIDLSNLYRKI 53 (63) T ss_dssp TCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 989999999895999999999 No 247 >3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} Probab=53.78 E-value=4.9 Score=17.97 Aligned_cols=27 Identities=4% Similarity=0.068 Sum_probs=22.2 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 121499999984887778763158988 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+.|-.++|+..||++.++.+|=.++. T Consensus 23 ~gltQ~elA~~lgvs~~tv~~wE~G~~ 49 (73) T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKGNA 49 (73) T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTTSS T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 699999999997989999999994998 No 248 >2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} Probab=53.26 E-value=4.9 Score=17.97 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=31.1 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 841214999999848877787631589889999999999 Q T0596 24 SWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRA 62 (213) Q Consensus 24 G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~ 62 (213) -..+.|..++|++.||++.++..+-.+|..+=..++... T Consensus 21 ~~~glsq~eLA~~lGvs~~~is~i~~G~~~it~~~a~rL 59 (113) T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRL 59 (113) T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 767999999999959999999999828778999999999 No 249 >3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} Probab=52.75 E-value=8.7 Score=16.04 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=18.8 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 998648412149999998488777876315 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .+.+.| +.|+.+||+..|++++++.... T Consensus 39 ~l~~~~--~~t~~ela~~l~~~~~~vs~~v 66 (142) T 3bdd_A 39 TLLKDA--PLHQLALQERLQIDRAAVTRHL 66 (142) T ss_dssp HHHHHC--SBCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 998879--9899999999897987999999 No 250 >2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} Probab=52.06 E-value=4.2 Score=18.53 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=21.5 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 12149999998488777876315898 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+.|..+||+..|+|..|+..|..+- T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i 68 (91) T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNI 68 (91) T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 28999999999788887999999999 No 251 >1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=51.31 E-value=6.7 Score=16.93 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=17.6 Q ss_pred HHHHHHHHHCCCHHHHHHH Q ss_conf 4999999848877787631 Q T0596 29 RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~y 47 (213) |...+|+.+||+++++|.+ T Consensus 12 ~~~kLA~~lGis~~aVsqW 30 (61) T 1rzs_A 12 TQRAVAKALGISDAAVSQW 30 (61) T ss_dssp SHHHHHHHHTCCHHHHHHC T ss_pred CHHHHHHHHCCCHHHHHHC T ss_conf 8999999929999999872 No 252 >3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* Probab=51.24 E-value=5.6 Score=17.55 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=3.9 Q ss_pred HHHHHHHHCCC Q ss_conf 99999984887 Q T0596 30 LYDIAARLAVS 40 (213) Q Consensus 30 v~~IA~~aGvs 40 (213) +..||+..|++ T Consensus 46 ~~~iA~~l~v~ 56 (181) T 3i9v_2 46 IEEIARLVGTT 56 (181) T ss_dssp HHHHHHHHTSC T ss_pred HHHHHHHHCCC T ss_conf 99999997949 No 253 >3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} Probab=50.26 E-value=9.4 Score=15.76 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999999999986484121499999984887778763158988999999999 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) ..+|-+.-..+=.+.| .|-.++|+.+||+++++.++=.++..+=...+.. T Consensus 12 ~~~lg~~lk~~R~~~g---ltq~elA~~lgvs~~~is~~E~G~~~~~~~~l~~ 61 (86) T 3eus_A 12 HVYLCQRLRQARLDAG---LTQADLAERLDKPQSFVAKVETRERRLDVIEFAK 61 (86) T ss_dssp HHHHHHHHHHHHHHTT---CCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHH T ss_pred HHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 9999999999999849---9999999997969999999988999999999999 No 254 >3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp} Probab=50.21 E-value=5.3 Score=17.71 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 21499999984887778763158988999999999999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~ 64 (213) +.|..++|+..||+++++..|-.++...=...+..... T Consensus 36 glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~l~kia~ 73 (111) T 3mlf_A 36 GLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMS 73 (111) T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 99999999997988989999987999999999999999 No 255 >3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae} Probab=50.08 E-value=4.2 Score=18.47 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=26.4 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 121499999984887778763158988999999999 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) .+.|..++|+.+||+.+++++|-.++...=...+.. T Consensus 80 ~glTq~elA~~~gvs~~~is~iE~G~~~ps~~~l~k 115 (141) T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQK 115 (141) T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 299899999998979999999987998899999999 No 256 >2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3 Probab=50.05 E-value=7.3 Score=16.60 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.7 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 121499999984887778763158988 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+.|-.++|+..||+.+++.+|=.++. T Consensus 42 ~gltQ~~lA~~lgvs~~ti~~~E~G~~ 68 (99) T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQGRS 68 (99) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSS T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 599999999893998999999988998 No 257 >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Probab=49.85 E-value=7.3 Score=16.62 Aligned_cols=10 Identities=20% Similarity=-0.018 Sum_probs=4.8 Q ss_pred HHCCCHHHHH Q ss_conf 3158988999 Q T0596 46 LYFREKDELI 55 (213) Q Consensus 46 ~yF~sKe~L~ 55 (213) .++++.+.+. T Consensus 62 ~~~~~~~~~~ 71 (225) T 3klo_A 62 YSRISDDVLT 71 (225) T ss_dssp GGGCCHHHHH T ss_pred CCCCCCCHHH T ss_conf 5689996599 No 258 >2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} Probab=49.50 E-value=7.5 Score=16.51 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 789999999999999864841214999999848877787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) |+.-.+||.. +.++| ..|+.+||++.|+|++++.+.... T Consensus 8 D~~D~~IL~~----L~~d~--R~s~~~iA~~lgls~~tv~~Ri~r 46 (151) T 2dbb_A 8 DRVDMQLVKI----LSENS--RLTYRELADILNTTRQRIARRIDK 46 (151) T ss_dssp CHHHHHHHHH----HHHCT--TCCHHHHHHHTTSCHHHHHHHHHH T ss_pred HHHHHHHHHH----HHHCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 0999999999----98859--999999999989699999999999 No 259 >1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A 1etw_A 4fis_A Probab=49.42 E-value=7.6 Score=16.50 Aligned_cols=19 Identities=11% Similarity=0.066 Sum_probs=10.5 Q ss_pred HHHHHHHHHCCCHHHHHHH Q ss_conf 4999999848877787631 Q T0596 29 RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~y 47 (213) ++...|+..|+++.|+|+. T Consensus 73 n~~~AA~~Lgisr~tL~~k 91 (98) T 1eto_A 73 NQTRAALMMGINRGTLRKK 91 (98) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 8999999979899999999 No 260 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Probab=48.90 E-value=6.6 Score=16.96 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=18.1 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 998648412149999998488777876315 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .+.+.| +++|+.+||+..|++++++-+.. T Consensus 55 ~L~~~~-~~~t~~eLa~~l~i~~~~vs~~v 83 (160) T 3boq_A 55 QLARNP-DGLSMGKLSGALKVTNGNVSGLV 83 (160) T ss_dssp HHHHCT-TCEEHHHHHHHCSSCCSCHHHHH T ss_pred HHHHCC-CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 998489-99989999999896874899999 No 261 >1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1 Probab=48.83 E-value=4.3 Score=18.42 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=37.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 78999999999999986484121499999984887778763158988 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++..-.|++...+.+.+.|..- +++.+++..|.+...+|.-|++.- T Consensus 49 t~~HW~vI~~lR~~y~~~~~~P-~~R~l~k~~~~~~~~L~~LFp~gP 94 (111) T 1ji8_A 49 TEEHWKLVKYLREYWETFGTCP-PIKMVTKETGFSLEKIYQLFPSGP 94 (111) T ss_dssp CHHHHHHHHHHHHHTTTTSCCC-CSTTGGGGSCCCHHHHHHHTTSCH T ss_pred CHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHCCCCH T ss_conf 8999999999999999978997-089999981878899999859989 No 262 >1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12 Probab=48.58 E-value=4.8 Score=18.03 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=23.7 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 12149999998488777876315898899 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) .++|..++|+.+||++.++.+|-.++... T Consensus 25 ~gltq~elA~~~gvs~~~is~~E~g~~~p 53 (91) T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESGRAIP 53 (91) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHTCSCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 18869999998099999999997699889 No 263 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=48.50 E-value=10 Score=15.56 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) +.|+.+||++.+++++++.+. T Consensus 51 ~~t~~ela~~~~~~~~~vs~~ 71 (155) T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLM 71 (155) T ss_dssp EEEHHHHHHHHTSCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 979999999989699899999 No 264 >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A Probab=48.28 E-value=2.1 Score=20.88 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 178999999999999986484121499999984887778763158988 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+++|-+|+..- .+ | ..|+.+|++..|++++++++|...-+ T Consensus 10 ~~~~R~~Il~~L----~~-~--~~~~~ela~~~~~s~~~vs~HL~~L~ 50 (232) T 2qlz_A 10 GNKVRRDLLSHL----TC-M--ECYFSLLSSKVSVSSTAVAKHLKIME 50 (232) T ss_dssp TSHHHHHHHHHH----TT-T--TTCSSSSCTTCCCCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899999999999----81-9--99799999998919999999999999 No 265 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Probab=48.22 E-value=5.8 Score=17.39 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=15.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 99986484121499999984887778763 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) ..+.++|..++|..+||+..|++++++.+ T Consensus 48 ~~L~~~~~~~it~~eLa~~~~~~~~t~sr 76 (148) T 3jw4_A 48 GYIYENQESGIIQKDLAQFFGRRGASITS 76 (148) T ss_dssp HHHHHHTTTCCCHHHHHHC------CHHH T ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 99980899997999999998978858999 No 266 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=48.10 E-value=10 Score=15.52 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHCCCHHHHHH Q ss_conf 21499999984887778763 Q T0596 27 AVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~ 46 (213) ++|+.+||++.|++++++.. T Consensus 55 ~~t~~eLa~~l~i~~~tvs~ 74 (154) T 2qww_A 55 GISVADLTKRLIITGSSAAA 74 (154) T ss_dssp TEEHHHHHHHHTCCHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHH T ss_conf 98999999997888004789 No 267 >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Probab=47.89 E-value=10 Score=15.50 Aligned_cols=16 Identities=0% Similarity=0.098 Sum_probs=7.9 Q ss_pred HHHHHHHHHHHCCCHH Q ss_conf 2149999998488777 Q T0596 27 AVRLYDIAARLAVSLD 42 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~ 42 (213) +.|-.+|....|...+ T Consensus 21 g~sQ~dV~~al~~~~g 36 (151) T 3d1n_I 21 GLTQTQVGQAMTATEG 36 (151) T ss_dssp TCCHHHHHHHHSCSSS T ss_pred CCCHHHHHHHHHCCCC T ss_conf 6769689999973377 No 268 >3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} Probab=47.64 E-value=8.6 Score=16.08 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 21499999984887778763158 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) |.|..+||+..|+|..|+-+|-. T Consensus 212 G~~~~~iA~~l~is~~tv~~h~~ 234 (258) T 3clo_A 212 GLSSKEIAATLYISVNTVNRHRQ 234 (258) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 79999999996988999999999 No 269 >3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} Probab=46.37 E-value=11 Score=15.33 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 999999998648412149999998488777876315 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++.|++.+. +...+|+..||+..+++.++ T Consensus 4 i~~AI~~~G-------~q~~LAr~lGvsq~~Vs~W~ 32 (79) T 3bd1_A 4 IDIAINKLG-------SVSALAASLGVRQSAISNWR 32 (79) T ss_dssp HHHHHHHHS-------SHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHC-------CHHHHHHHHCCCHHHHHHHH T ss_conf 999999968-------99999999199899999988 No 270 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Probab=45.69 E-value=11 Score=15.25 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 99999999986484121499999984887778763158 Q T0596 12 IVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 12 Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) ++--+..+....|. |-.+||++.|+|+.++-++-. T Consensus 9 ll~~vA~lYY~~gl---tQ~eIA~~lgiSR~~VsRlL~ 43 (315) T 2w48_A 9 LIVKIAQLYYEQDM---TQAQIARELGIYRTTISRLLK 43 (315) T ss_dssp HHHHHHHHHHTSCC---CHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999983499---999999986989999999999 No 271 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A Probab=45.56 E-value=11 Score=15.24 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=15.4 Q ss_pred CHHHHHHHHHHHCCCHHHHHHH Q ss_conf 1214999999848877787631 Q T0596 26 EAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~y 47 (213) .++|+.+||+..|++++++.+. T Consensus 50 ~~~t~~eLa~~l~i~~~~vsr~ 71 (142) T 3ech_A 50 RGLNLQDLGRQMCRDKALITRK 71 (142) T ss_dssp TTCCHHHHHHHHC---CHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9989999999979357269999 No 272 >2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} Probab=45.51 E-value=9.3 Score=15.78 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=23.6 Q ss_pred HHCCCCHHHHHHHHHHHC--CCHHHHHHHCCCHHHH Q ss_conf 864841214999999848--8777876315898899 Q T0596 21 AHTSWEAVRLYDIAARLA--VSLDEIRLYFREKDEL 54 (213) Q Consensus 21 ~e~G~~~~tv~~IA~~aG--vs~~t~y~yF~sKe~L 54 (213) .++| .|..++|++.| |+++++-+|=.++... T Consensus 18 ~~~g---ltq~~lA~~~g~~is~~~is~~E~G~~~p 50 (71) T 2ewt_A 18 TQQG---LSLHGVEEKSQGRWKAVVVGSYERGDRAV 50 (71) T ss_dssp HHTT---CCHHHHHHHTTTSSCHHHHHHHHHTCSCC T ss_pred HHCC---CCHHHHHHHHCCCCCHHHHHHHHCCCCCC T ss_conf 9849---96999999988972899999998699899 No 273 >1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H Probab=45.49 E-value=10 Score=15.53 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.1 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 9986484121499999984887778763 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) -|+=.|+...|+.+||+..|||+..+.. T Consensus 22 rfGl~~~~~~tl~eIa~~lgiS~erVrq 49 (73) T 1ku3_A 22 RKGLIDGREHTLEEVGAYFGVTRERIRQ 49 (73) T ss_dssp HHTTTTSSCCCHHHHHHHHTCCHHHHHH T ss_pred HHCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 8188999987899999998979999999 No 274 >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Probab=45.42 E-value=11 Score=15.22 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999999864-84121499999984887778763158988 Q T0596 11 AIVDTAVELAAHT-SWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 11 ~Il~AA~~l~~e~-G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .||+. .|... =.+......||+..|++...|..+|.++- T Consensus 18 ~~Le~---~F~~~~~P~~~~~~~La~~~gl~~~qV~~WF~NrR 57 (61) T 1akh_A 18 AFLEE---VFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 57 (61) T ss_dssp HHHHH---HHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99999---99887999999999999997879999679778521 No 275 >3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* Probab=45.22 E-value=8 Score=16.29 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=20.3 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 412149999998488777876315898 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) -.+.|-.++|+..|+++.++.+|=.++ T Consensus 82 ~~gltq~elA~~lgvs~~ti~~~E~G~ 108 (133) T 3gn5_A 82 KLSLTQKEASEIFGGGVNAFSRYEKGN 108 (133) T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHTTC T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHCCC T ss_conf 849999999988099999999998699 No 276 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=45.16 E-value=11 Score=15.19 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=21.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999864841214999999848877787631 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) +..+.++| ++|+.+||+..|++++++.+. T Consensus 35 L~~i~~~~--~~t~~eLa~~~~~~~~tvs~~ 63 (138) T 3bpv_A 35 LLRIHREP--GIKQDELATFFHVDKGTIART 63 (138) T ss_dssp HHHHHHST--TCBHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 99998589--989999999989698899999 No 277 >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Probab=45.14 E-value=7.2 Score=16.64 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99999999999998648412149999998488777876315 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +.+.+|.+-..+..++| .+++.+||+..||+++++-... T Consensus 3 ~~EdyL~~i~~l~~~~~--~v~~~~iA~~L~v~~~sv~~~l 41 (214) T 3hrs_A 3 NKEDYLKCLYELGTRHN--KITNKEIAQLMQVSPPAVTEMM 41 (214) T ss_dssp CHHHHHHHHHHTTSSCS--CCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 69999999999983499--8759999999789928999999 No 278 >1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A Probab=44.70 E-value=11 Score=15.15 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.0 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 9986484121499999984887778763158 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+.+.|+ |-.+||++.|+|++++.++.. T Consensus 19 ~l~~~G~---tq~~iA~~lg~srs~VS~~lr 46 (192) T 1zx4_A 19 RMKNDGM---SQKDIAAKEGLSQAKVTRALQ 46 (192) T ss_dssp HHHHTTC---CHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 9998799---999999998979999999999 No 279 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=44.69 E-value=11 Score=15.14 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) ++|+.+||+..|++++++.+- T Consensus 52 ~~t~~eLa~~l~~~~~~vsr~ 72 (140) T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGV 72 (140) T ss_dssp SBCHHHHHHHTTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCCCCHHHH T ss_conf 959999999878473629999 No 280 >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* Probab=44.28 E-value=11 Score=15.10 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=20.6 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----CCCHHHHHHH Q ss_conf 7178999999999999986484121499999984-----8877787631 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARL-----AVSLDEIRLY 47 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~a-----Gvs~~t~y~y 47 (213) +.++-|..|++.-. ..++ -.|..+|.+.. +|+.+|+|+. T Consensus 19 r~T~qR~~Il~~l~---~~~~--~~sa~ei~~~l~~~~~~is~aTVYR~ 62 (145) T 2fe3_A 19 RITPQRHAILEYLV---NSMA--HPTADDIYKALEGKFPNMSVATVYNN 62 (145) T ss_dssp CCCHHHHHHHHHHH---HCSS--CCCHHHHHHHHGGGCTTCCHHHHHHH T ss_pred CCCHHHHHHHHHHH---CCCC--CCCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 85999999999997---5899--99899999998850789888899999 No 281 >2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=44.19 E-value=11 Score=15.11 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=31.1 Q ss_pred HHHHHHHHHHCC-----CCHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 999999998648-----4121499999984887778763158988999 Q T0596 13 VDTAVELAAHTS-----WEAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 13 l~AA~~l~~e~G-----~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) ++.--..|.+.+ ...-.+.+||+..|++...|..+|.++-.-. T Consensus 20 ~~~Le~~F~~n~~~~~~p~~~~~~~La~~~gl~~~~I~~WF~NrR~k~ 67 (80) T 2da4_A 20 LATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80) T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999999999846778897999999999998819999999999999988 No 282 >1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1 Probab=44.05 E-value=12 Score=15.07 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.9 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999999986484-121499999984887778763158988 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+--..|.+..| +.....+||...|++...|..+|.++- T Consensus 21 ~~Le~~F~~n~~P~~~~~~~La~~~~l~~~~V~~WFqNrR 60 (67) T 1ocp_A 21 WSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60 (67) T ss_dssp HHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999867998999999999996869899889609887 No 283 >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28 Probab=43.24 E-value=12 Score=14.98 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=19.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 99986484121499999984887778763 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) ..+.+++=..+|..+||+..|++++++.+ T Consensus 41 ~~l~~~~~~~it~~~La~~~~~~~~tvs~ 69 (141) T 3bro_A 41 DYLSRNKNKEVLQRDLESEFSIKSSTATV 69 (141) T ss_dssp HHHHHTTTSCCBHHHHHHHHTCCHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 99998899996999999998988618999 No 284 >3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A* Probab=43.24 E-value=12 Score=14.98 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=23.1 Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 86484121499999984887778763158 Q T0596 21 AHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 21 ~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) -..||. .|-.+||++.|+|++.++++.. T Consensus 37 L~~~~~-~tQ~eLA~~lG~Srs~VS~~L~ 64 (189) T 3mky_B 37 LQNEFA-GNISALADAENISRKIITRCIN 64 (189) T ss_dssp HHTTTT-TCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHC-CCHHHHHHHHCCCHHHHHHHHH T ss_conf 986257-5899999997979999999999 No 285 >3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* Probab=43.20 E-value=12 Score=14.98 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=35.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCHHHHHH Q ss_conf 7178999999999999986484---121499999984887778763 Q T0596 4 NNDPMRDAIVDTAVELAAHTSW---EAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~---~~~tv~~IA~~aGvs~~t~y~ 46 (213) +.+-.+++|.+.-.+.+....| +.++-.++|++.|||++.+.- T Consensus 17 ~~~~l~e~vy~~i~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVRE 62 (226) T 3dbw_A 17 EVDLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRD 62 (226) T ss_dssp -CHHHHHHHHHHHHHHHHTTSSCTTCBCCHHHHHHHHTCCHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 7222999999999999984999980977999999998919999999 No 286 >1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A* Probab=43.19 E-value=11 Score=15.36 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=20.7 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) .|+.++|+-.|||+.|+.|| +|.+|+ T Consensus 6 ytIge~ak~~gis~~tLRyY--d~~GLl 31 (278) T 1r8e_A 6 YSIGEVSKLANVSIKALRYY--DKIDLF 31 (278) T ss_dssp EEHHHHHHHHTCCHHHHHHH--HHTTSS T ss_pred EEHHHHHHHHCCCHHHHHHH--HHCCCC T ss_conf 20999999988598999999--978998 No 287 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=43.13 E-value=12 Score=14.97 Aligned_cols=21 Identities=0% Similarity=0.093 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) ++|+.+||+..|++++++.+- T Consensus 56 ~~t~~eLa~~l~~~~~~vs~~ 76 (150) T 2rdp_A 56 DLTVGELSNKMYLACSTTTDL 76 (150) T ss_dssp SBCHHHHHHHHTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 959999999989588799999 No 288 >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Probab=42.99 E-value=12 Score=14.96 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=13.6 Q ss_pred HHHHHHHHHHCCCHHHHHHH Q ss_conf 14999999848877787631 Q T0596 28 VRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~y 47 (213) .|+.+||+..|++++++.+- T Consensus 51 ~t~~~la~~~~~~~~tvs~~ 70 (144) T 3f3x_A 51 RSMVYLANRYFVTQSAITAA 70 (144) T ss_dssp EEHHHHHHHHTCCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHH T ss_conf 19999999979788689999 No 289 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Probab=42.60 E-value=12 Score=14.91 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=20.7 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999864841214999999848877787631 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) +..+.++| ++|+.+||+..+++++++-+- T Consensus 35 L~~l~~~~--~~s~~~la~~l~i~~~~vs~~ 63 (144) T 1lj9_A 35 LVRVCENP--GIIQEKIAELIKVDRTTAARA 63 (144) T ss_dssp HHHHHHST--TEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 99998389--979999999989788589999 No 290 >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Probab=42.20 E-value=8.1 Score=16.27 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=5.1 Q ss_pred HCCCHHHHHH Q ss_conf 4887778763 Q T0596 37 LAVSLDEIRL 46 (213) Q Consensus 37 aGvs~~t~y~ 46 (213) .|.+.|++-. T Consensus 32 l~~SQgtlS~ 41 (164) T 2d5v_A 32 LCRSQGTLSD 41 (164) T ss_dssp TSCCHHHHHH T ss_pred HCCCCHHHHH T ss_conf 0578517778 No 291 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=42.10 E-value=12 Score=14.86 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=19.0 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 99864841214999999848877787631 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) .+..+| +.|+.+||+..|++++++.+- T Consensus 41 ~i~~~~--~~t~~ela~~~~i~~~~vs~~ 67 (145) T 2a61_A 41 KIYFEG--PKRPGELSVLLGVAKSTVTGL 67 (145) T ss_dssp HHHHHC--CBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHCC--CCCHHHHHHHCCCCHHHHHHH T ss_conf 998769--989999998829898899999 No 292 >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Probab=41.55 E-value=8.8 Score=15.99 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.5 Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999986484-121499999984887778763158988 Q T0596 15 TAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 15 AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .--..|....| +......||+..|++...|..+|.++- T Consensus 17 ~Le~~F~~n~~Ps~~~~~~La~~lgl~~~~V~~WFqNrR 55 (66) T 1bw5_A 17 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55 (66) T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999877998999999999994939899557035288 No 293 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=41.50 E-value=13 Score=14.79 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=19.7 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999986484121499999984887778763158 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +..+.+.| ++|+.+||+..+++++++.+... T Consensus 55 L~~l~~~~--~~t~~~La~~l~i~~~~vs~~l~ 85 (162) T 2fa5_A 55 ITILALYP--GSSASEVSDRTAMDKVAVSRAVA 85 (162) T ss_dssp HHHHHHST--TCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCCHHHHHH T ss_conf 99999679--98999999997766571999999 No 294 >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=40.89 E-value=13 Score=14.73 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 99999999999986484-121499999984887778763158988999 Q T0596 9 RDAIVDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) .-.||++. |...-| +...+..||...|++...|-.+|.++-.-+ T Consensus 14 Q~~~Le~~---F~~~~~P~~~~~~~La~~~gL~~~qI~~WF~NrR~k~ 58 (76) T 2ecc_A 14 QLAILKSF---FLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYAL 58 (76) T ss_dssp HHHHHHHH---HHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 99999999---9886999999999999998919999999999999988 No 295 >1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Probab=40.87 E-value=13 Score=14.72 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999998 Q T0596 9 RDAIVDTAVELAA 21 (213) Q Consensus 9 R~~Il~AA~~l~~ 21 (213) |++|+..-+.|.. T Consensus 14 r~~lv~~~l~lV~ 26 (239) T 1rp3_A 14 REELILKYLPLVK 26 (239) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999998599999 No 296 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=40.73 E-value=13 Score=14.71 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) ++|+.+||+..|++++++.+. T Consensus 57 ~~t~~ela~~~~~~~~~vsr~ 77 (155) T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRI 77 (155) T ss_dssp CBCHHHHHHHTTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 979999998959899899999 No 297 >3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A Probab=40.65 E-value=13 Score=14.78 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=8.8 Q ss_pred HHHHHHHHHCCCHHHHHH Q ss_conf 499999984887778763 Q T0596 29 RLYDIAARLAVSLDEIRL 46 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~ 46 (213) |-++|++..|||..|+-+ T Consensus 60 syreIa~~~gvS~aTIsR 77 (107) T 3frw_A 60 TYLDISEKTGASTATISR 77 (107) T ss_dssp CHHHHHHHHCCCHHHHHH T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 999999996987575899 No 298 >2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Probab=40.37 E-value=13 Score=14.75 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=19.8 Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 86484121499999984887778763 Q T0596 21 AHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 21 ~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) +=.|....|+.+||+..|||+..+.. T Consensus 19 Gl~~~~~~tl~eia~~lgis~erVrq 44 (68) T 2p7v_B 19 GIDMNTDYTLEEVGKQFDVTRERIRQ 44 (68) T ss_dssp TTTSSSCCCHHHHHHHHTCCHHHHHH T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 89999976899999998969999999 No 299 >3cmy_A HUP2, paired box protein PAX-3; DNA-binding protein, DNA, transcription regulation; 1.95A {Homo sapiens} PDB: 3lnq_A Probab=40.00 E-value=9.5 Score=15.72 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=29.2 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999998648-41214999999848877787631589889 Q T0596 15 TAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 15 AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) .--..|.+.. .+.....+||...|++...|..+|.++-. T Consensus 16 ~Le~~F~~~~~Ps~~~~~~La~~lgl~~~~V~~WFqNrRa 55 (61) T 3cmy_A 16 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRA 55 (61) T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999998679989999999999969397884681276677 No 300 >1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Probab=39.76 E-value=13 Score=14.60 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 999999999999-8648412149999998488777876315 Q T0596 9 RDAIVDTAVELA-AHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 9 R~~Il~AA~~l~-~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++.|+.|.+=+. .+.|. ..|+.+|++..+++...+.+.| T Consensus 47 ~~~i~aAciy~acR~~~~-prtl~eia~~~~~~~k~l~k~~ 86 (207) T 1c9b_A 47 NDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGRCF 86 (207) T ss_dssp HHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHH T ss_conf 352999789999998289-8739999999788899999999 No 301 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=39.73 E-value=13 Score=14.63 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=15.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 99986484121499999984887778763 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) ..+.+.| ++|+.+||+..|++++++-+ T Consensus 40 ~~l~~~~--~~t~~~la~~~~~~~~~vs~ 66 (139) T 3bja_A 40 QVLAKSG--KVSMSKLIENMGCVPSNMTT 66 (139) T ss_dssp HHHHHSC--SEEHHHHHHHCSSCCTTHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHH T ss_conf 9999879--98999999998969989999 No 302 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=39.39 E-value=13 Score=14.56 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=16.0 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 986484121499999984887778763 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) +.++| ++|+.+||+..|++++++-+ T Consensus 49 l~~~~--~~t~~eLa~~~~i~~~tisr 73 (147) T 1z91_A 49 LWEHE--TLTVKKMGEQLYLDSGTLTP 73 (147) T ss_dssp HHHHS--EEEHHHHHHTTTCCHHHHHH T ss_pred HHCCC--CCCHHHHHHHHCCCHHHHHH T ss_conf 88589--99999999997968766889 No 303 >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=38.89 E-value=9.8 Score=15.61 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=28.9 Q ss_pred HHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999986484-1214999999848877787631589889 Q T0596 16 AVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 16 A~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) --..|....| ....+..||...|++...|..+|.++-. T Consensus 26 Le~~f~~~~~P~~~~~~~La~~~gL~~~~V~~WF~NrR~ 64 (89) T 2ecb_A 26 LQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 64 (89) T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999869999999999998858789999997999988 No 304 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=38.52 E-value=14 Score=14.46 Aligned_cols=20 Identities=5% Similarity=0.067 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHCCCHHHHHH Q ss_conf 21499999984887778763 Q T0596 27 AVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~ 46 (213) ++|+.+||+..|++++++-+ T Consensus 68 ~~t~~eLa~~l~i~~~tvsr 87 (166) T 3deu_A 68 DQSQIQLAKAIGIEQPSLVR 87 (166) T ss_dssp SEEHHHHHHHHTSCHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHH T ss_conf 99999999998969989999 No 305 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=38.21 E-value=14 Score=14.43 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=18.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 99986484121499999984887778763 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) ..+.+.| .+|+.+||+..|++++++.+ T Consensus 51 ~~l~~~~--~~t~~ela~~~~i~~~~vs~ 77 (154) T 2eth_A 51 LYVALFG--PKKMKEIAEFLSTTKSNVTN 77 (154) T ss_dssp HHHHHHC--CBCHHHHHHHTTSCHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHH T ss_conf 9999869--95999999998979879999 No 306 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=38.17 E-value=14 Score=14.42 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=18.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999864841214999999848877787631 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.++| ++|+.+||+..|++++++-+- T Consensus 54 ~~L~~~~--~~t~~~la~~~~~~~~tvs~~ 81 (153) T 2pex_A 54 LVLWETD--ERSVSEIGERLYLDSATLTPL 81 (153) T ss_dssp HHHHHSC--SEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHCCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 9996589--989999999989688699999 No 307 >2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} Probab=38.02 E-value=8.4 Score=16.13 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 21499999984887778763158988 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) -.|+.++|+..||++.+++++-+++. T Consensus 31 ~lt~~evA~~LGvs~~~V~~~i~~g~ 56 (148) T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGH 56 (148) T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTS T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCC T ss_conf 34899999996988899999998794 No 308 >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Probab=37.57 E-value=11 Score=15.23 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=28.4 Q ss_pred HHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999986484-1214999999848877787631589889 Q T0596 16 AVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 16 A~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) --..|....| +......||...|++...|-.+|.++-. T Consensus 22 Le~~F~~~~~Ps~~~~~~La~~l~l~~~qV~~WF~NrR~ 60 (70) T 2da1_A 22 LRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLF 60 (70) T ss_dssp HHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999749989899999999837989993570287788 No 309 >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Probab=37.49 E-value=14 Score=14.35 Aligned_cols=40 Identities=18% Similarity=0.040 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 899999999999998648412149999998488777876315 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++-+..|.+-..+-.+++. +++.+||+..||+++|+..-. T Consensus 6 ~~~EdYL~~Iy~l~~~~~~--v~~~~lA~~L~vs~~svt~~l 45 (230) T 1fx7_A 6 DTTEMYLRTIYDLEEEGVT--PLRARIAERLDQSGPTVSQTV 45 (230) T ss_dssp SHHHHHHHHHHHHHHHTSC--CCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCC--CCHHHHHHHHCCCCHHHHHHH T ss_conf 7899999999999844997--519999999789916899999 No 310 >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Probab=37.11 E-value=14 Score=14.30 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=28.8 Q ss_pred HHHHHC-C-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999864-8-41214999999848877787631589889 Q T0596 18 ELAAHT-S-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 18 ~l~~e~-G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) .+|... . .+...+.+||++.|++...|-.+|.++-. T Consensus 25 ~~f~~~~~~P~~~~~~~LA~~l~l~~~qV~~WF~NrR~ 62 (72) T 2cqx_A 25 KVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 62 (72) T ss_dssp HHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99988689979999999999958986889999987698 No 311 >1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12 Probab=36.82 E-value=9.4 Score=15.77 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=8.9 Q ss_pred HHHHHHHHHCCCHHHHHH Q ss_conf 499999984887778763 Q T0596 29 RLYDIAARLAVSLDEIRL 46 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~ 46 (213) ++..-|+..|+++.|+|+ T Consensus 66 n~~~AA~~LGisR~TL~~ 83 (91) T 1ntc_A 66 HKQEAARLLGWGAATLTA 83 (91) T ss_dssp CTTHHHHHTTCCHHHHHH T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 499999997989999999 No 312 >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Probab=36.51 E-value=11 Score=15.32 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=28.2 Q ss_pred HHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999998648-41214999999848877787631589889 Q T0596 16 AVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 16 A~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) -...|.+.. .+.-.+..||...|++...|..+|.++-. T Consensus 22 Le~~F~~~~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 60 (70) T 2da2_A 22 LQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQ 60 (70) T ss_dssp HHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999869999999999999979699996895398688 No 313 >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=36.32 E-value=14 Score=14.49 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=29.9 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999986484-121499999984887778763158988 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) |..--.+|...-| +...+..||...|++...|..+|.++- T Consensus 15 l~~Le~~F~~n~~P~~~~~~~La~~lgL~~~~V~~WFqNrR 55 (64) T 2e19_A 15 LSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQ 55 (64) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC T ss_conf 99999999847996999999999998809999669733120 No 314 >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=36.12 E-value=15 Score=14.19 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=29.5 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999998648-41214999999848877787631589889 Q T0596 15 TAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 15 AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +--..|.+.- .+......||+..|++...|..+|.++-. T Consensus 21 ~Le~~F~~~~~P~~~~~~~La~~l~L~~~qV~~WFqNrR~ 60 (80) T 2dmq_A 21 TMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA 60 (80) T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9999998769989999999998708998996793297799 No 315 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=34.85 E-value=16 Score=14.05 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=7.9 Q ss_pred HHHHHHHHHHCCCHHHHH Q ss_conf 149999998488777876 Q T0596 28 VRLYDIAARLAVSLDEIR 45 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y 45 (213) +|+.+||+..|++++++- T Consensus 67 ~t~~eLa~~~~v~~~~vs 84 (162) T 3cjn_A 67 LPIGTLGIFAVVEQSTLS 84 (162) T ss_dssp EEHHHHHHHHTCCHHHHH T ss_pred CCHHHHHHHHCCCHHHHH T ss_conf 899999999896988999 No 316 >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.66 E-value=16 Score=14.03 Aligned_cols=41 Identities=10% Similarity=0.328 Sum_probs=31.3 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ++.--..|.+..| +......||...|++...|-.+|.++-. T Consensus 19 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 60 (70) T 2dmu_A 19 LEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRA 60 (70) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999779998799999999967988890363166366 No 317 >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... Probab=34.56 E-value=16 Score=14.01 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 78999999999999986484121499999984887778763158 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .++.+.-|.+-..+-.++| .+++.+||+..||+++|+..... T Consensus 5 s~~~EdYL~~Iy~l~~~~~--~~~~~~iA~~L~vs~~svt~~l~ 46 (226) T 2qq9_A 5 VATTEMYLRTIYELEEEGV--TPLRARIAERLEQSGPTVSQTVA 46 (226) T ss_dssp HHHHHHHHHHHHHHHHHTC--CCBHHHHHHHHTCCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 5239999999999986499--77299999996899079999999 No 318 >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.48 E-value=16 Score=14.01 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999998648-4121499999984887778763158988 Q T0596 11 AIVDTAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 11 ~Il~AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .||++ .|...- .+...+..||+..|++...|..+|.++- T Consensus 20 ~~Le~---~F~~~~yP~~~~~~~LA~~~gL~~~~V~~WF~NrR 59 (75) T 2da5_A 20 RALES---SFAQNPLPLDEELDRLRSETKMTRREIDSWFSERR 59 (75) T ss_dssp HHHHH---HHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHT T ss_pred HHHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999---99985578999999999996854989999999989 No 319 >2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} Probab=34.37 E-value=16 Score=13.99 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=31.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 999999986484121499999984887778763158988999999999 Q T0596 14 DTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 14 ~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) ...+.-....--.+.|-.++|+.+||+..++.+|=.++...=..++.. T Consensus 36 g~~i~~~R~~~~kglTQ~eLA~~~gvs~~~is~~E~G~~~ps~~~l~k 83 (107) T 2jvl_A 36 GKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSK 83 (107) T ss_dssp HHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 999999999988699899999998988999999986997899999999 No 320 >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Probab=34.17 E-value=16 Score=13.97 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=31.7 Q ss_pred HHHHHHHHH-CCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999986-484-12149999998488777876315898899 Q T0596 14 DTAVELAAH-TSW-EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 14 ~AA~~l~~e-~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +.--..|.. ..| +.....+||...|++...|.-+|-++-.= T Consensus 14 ~~Le~~F~~~~~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak 56 (72) T 1uhs_A 14 EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72) T ss_dssp HHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999863343899999999999099699999879999999 No 321 >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.14 E-value=13 Score=14.70 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999998648-4121499999984887778763158988 Q T0596 11 AIVDTAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 11 ~Il~AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .||++. |...- .+......||...|++...|..+|.++- T Consensus 21 ~~Le~~---F~~~~~P~~~~~~~LA~~~~l~~~qV~~WFqNrR 60 (76) T 2dn0_A 21 SALKGS---FCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRR 60 (76) T ss_dssp HHHHHH---HHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHEEHHHHHHH T ss_conf 999999---9977677899999999996999553413876757 No 322 >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.05 E-value=13 Score=14.54 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=29.5 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999986484-1214999999848877787631589889 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +.--..|....| +......||...|++...|..+|.++-. T Consensus 18 ~~Le~~F~~n~~Ps~~~~~~La~~~~L~~~~V~~WFqNrR~ 58 (71) T 2da7_A 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71) T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999998668878999999999808989999999998574 No 323 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} Probab=33.91 E-value=16 Score=13.94 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----CCCHHHHHHHC Q ss_conf 178999999999999986484121499999984-----88777876315 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARL-----AVSLDEIRLYF 48 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~a-----Gvs~~t~y~yF 48 (213) .++.|..|++. +.+..=.-.|+.+|.+++ .|+.+|+|+-. T Consensus 15 ~T~qR~~Il~~----L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYRtL 59 (150) T 2w57_A 15 VTLPRLKILEV----LQQPECQHISAEELYKKLIDLGEEIGLATVYRVL 59 (150) T ss_dssp CCHHHHHHHHH----HTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHH T ss_pred CCHHHHHHHHH----HHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 89899999999----9828999999999999998608885789999999 No 324 >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Probab=33.47 E-value=16 Score=13.89 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=30.6 Q ss_pred HHHHHHHH-C-CCCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 99999986-4-841214999999848877787631589889 Q T0596 15 TAVELAAH-T-SWEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 15 AA~~l~~e-~-G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) .--..|.. . =.+......||...|++...|..+|.+|-. T Consensus 16 ~Le~~F~~~~~yP~~~~r~~LA~~lgL~~~qV~~WFqNrRa 56 (73) T 2hi3_A 16 ILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 56 (73) T ss_dssp HHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999978589939999999999959988896894498768 No 325 >2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82 Probab=33.43 E-value=10 Score=15.50 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC----HHHHHHH Q ss_conf 78999999999999986484121499999984887----7787631 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVS----LDEIRLY 47 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs----~~t~y~y 47 (213) .-+|++|++.-. +. ..|..+|++..|+. ...+|.| T Consensus 10 ~T~RerIi~lL~----~~---~~t~~eia~~l~i~~~~~~k~vy~h 48 (105) T 2gmg_A 10 ATRREKIIELLL----EG---DYSPSELARILDMRGKGSKKVILED 48 (105) T ss_dssp HHHHHHHHHHTT----TS---CBCTTHHHHSSCCCSSCCHHHHHHH T ss_pred CCHHHHHHHHHH----CC---CCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 039999999998----39---9999999999564566638899999 No 326 >3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A Probab=33.40 E-value=16 Score=13.88 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=29.8 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC-CHHHHHHHHHHHHHHHH Q ss_conf 9986484121499999984887778763158-98899999999999999 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFR-EKDELIDAWFDRADSRM 66 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~-sKe~L~~a~~~~~~~~~ 66 (213) ...++|+ |+.++|++.|||++++-..+. +|-..=...+..+...+ T Consensus 238 ~rk~RGL---TL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL 283 (443) T 3g7d_A 238 FLARRAH---TRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRAL 283 (443) T ss_dssp HHHHTTC---CHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHH T ss_pred HHHHCCC---CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC T ss_conf 9997188---899999886989999999985688898899999999972 No 327 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=33.24 E-value=16 Score=13.86 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=19.1 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 121499999984887778763158 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+.|+.+||++.|++++++.+... T Consensus 49 ~~~~~~ela~~l~~~~~~vs~~i~ 72 (142) T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLA 72 (142) T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 998999999997989889999999 No 328 >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Probab=32.82 E-value=17 Score=13.81 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.7 Q ss_pred HHHHHC-C-CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999864-8-4121499999984887778763158988 Q T0596 18 ELAAHT-S-WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 18 ~l~~e~-G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ..|... - .....+.+||+..|++...|..+|.+|- T Consensus 17 ~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WF~NrR 53 (64) T 1x2m_A 17 KVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRR 53 (64) T ss_dssp HHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999838999899999999994998589999758767 No 329 >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 Probab=32.76 E-value=17 Score=13.81 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=35.3 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHCCCHHHHHHH Q ss_conf 71789999999999999864841---214999999848877787631 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWE---AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~---~~tv~~IA~~aGvs~~t~y~y 47 (213) ++....++|.+.-.+.+....|. .++-.+||++.|||++.+--- T Consensus 25 ~r~s~~e~v~~~Lr~~I~~g~l~pG~~L~E~~La~~~gVSRtpVREA 71 (239) T 2hs5_A 25 ERTSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREA 71 (239) T ss_dssp --CHHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 67899999999999999809999909828999999989597999999 No 330 >3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A Probab=32.75 E-value=12 Score=14.81 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=4.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999887 Q T0596 178 LKRHLTMAAWLG 189 (213) Q Consensus 178 l~~~l~~~~~l~ 189 (213) +.+.+.....++ T Consensus 277 vnhRlrKi~~iA 288 (295) T 3hyi_A 277 IYSKLKRIIKIA 288 (295) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 979999999999 No 331 >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=32.62 E-value=14 Score=14.35 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=31.5 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 999999986484-121499999984887778763158988999 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) ..--..|.+.-| +.....+||+..|++...|..+|.++-.-. T Consensus 20 ~~Le~~F~~~~~P~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~ 62 (80) T 2cue_A 20 EALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 62 (80) T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHHH T ss_conf 9999999986777799999999992999999877402440788 No 332 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=32.61 E-value=17 Score=13.79 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=17.8 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 841214999999848877787631 Q T0596 24 SWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 24 G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ...++|+.+||+..|++++++.+- T Consensus 47 ~~~~~t~~ela~~l~~~~~tvs~~ 70 (140) T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPL 70 (140) T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 779989999999989688689999 No 333 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Probab=32.25 E-value=17 Score=13.75 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=17.9 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 98648412149999998488777876315 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +.+..-..+|+.+||+..|++++++.+.- T Consensus 46 l~~~~~~~~t~~ela~~l~~~~~~vs~~i 74 (127) T 2frh_A 46 ISENKEKEYYLKDIINHLNYKQPQVVKAV 74 (127) T ss_dssp HHHTCCSEEEHHHHHHHSSSHHHHHHHHH T ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 98289998779999999797885899999 No 334 >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Probab=32.18 E-value=17 Score=13.74 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=30.5 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +..--..|.+..| +.....+||...|++...|-.+|.++-. T Consensus 13 l~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~~WFqNrR~ 54 (67) T 2k40_A 13 IEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRA 54 (67) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999789988789999999929898991250186779 No 335 >1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12 Probab=32.13 E-value=17 Score=13.77 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=14.8 Q ss_pred HHHHHHHHHHCCCHHHHHH Q ss_conf 1499999984887778763 Q T0596 28 VRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~ 46 (213) -|.+.+|++.|||..++-+ T Consensus 34 PStRqLAkrLg~SHTaiAN 52 (61) T 1g2h_A 34 PSTRKLAQRLGVSHTAIAN 52 (61) T ss_dssp CSHHHHHHHTTSCTHHHHH T ss_pred CCHHHHHHHHCCCHHHHHH T ss_conf 7389999995861899998 No 336 >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=31.33 E-value=15 Score=14.08 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=28.3 Q ss_pred HHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999986484-1214999999848877787631589889 Q T0596 17 VELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 17 ~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) -..|....| +......||...|++...|..+|-++-. T Consensus 23 e~~F~~~~~P~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 60 (70) T 2e1o_A 23 EKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA 60 (70) T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99998869999999999999959898896696076538 No 337 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=31.25 E-value=18 Score=13.63 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=6.6 Q ss_pred HHHHHHHHHHCCCHHHH Q ss_conf 14999999848877787 Q T0596 28 VRLYDIAARLAVSLDEI 44 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~ 44 (213) +|+.+||++.+++++++ T Consensus 61 ~t~~eLa~~l~~~~~~v 77 (162) T 3k0l_A 61 LSNAKLAERSFIKPQSA 77 (162) T ss_dssp CCHHHHHHHHTSCGGGH T ss_pred CCHHHHHHHHCCCHHHH T ss_conf 89999999989688689 No 338 >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Probab=30.91 E-value=18 Score=13.59 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=29.4 Q ss_pred HHHHHHHHHCC----CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999998648----4121499999984887778763158988 Q T0596 14 DTAVELAAHTS----WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 14 ~AA~~l~~e~G----~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +..-..|..+. ...-....||+..|++...|..+|.++- T Consensus 40 ~~Le~~f~~~~~~PYPs~~~~~~La~~~gL~~~qV~~WF~N~R 82 (87) T 1mnm_C 40 RILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 82 (87) T ss_dssp HHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 9999999975898995999999999998829999989888631 No 339 >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=30.79 E-value=18 Score=13.57 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=27.4 Q ss_pred HHHHHH-C-CCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999986-4-84121499999984887778763158988 Q T0596 17 VELAAH-T-SWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 17 ~~l~~e-~-G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) -..|.+ . =...-...+||+..|++...|..+|.++- T Consensus 23 e~~F~~~~~~P~~~~~~~La~~~gl~~~qI~~WF~NrR 60 (71) T 1wi3_A 23 QSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71) T ss_dssp HHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999826778899999998782788999999848788 No 340 >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Probab=30.78 E-value=18 Score=13.57 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=28.7 Q ss_pred HHHHHHHCC----CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999998648----4121499999984887778763158988 Q T0596 16 AVELAAHTS----WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 16 A~~l~~e~G----~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) --..|.++. .+..-...||+..|++..-|..+|.++- T Consensus 17 Le~~f~~~~~nPYPs~~~~~~La~~~gl~~~qV~~WF~N~R 57 (83) T 1le8_B 17 LESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARR 57 (83) T ss_dssp HHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999983789997999999999998829999999899988 No 341 >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A Probab=30.26 E-value=18 Score=13.51 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHCCCC---HH-HHHHHHHHHCCCHHHHHHHC Q ss_conf 999999999999864841---21-49999998488777876315 Q T0596 9 RDAIVDTAVELAAHTSWE---AV-RLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~---~~-tv~~IA~~aGvs~~t~y~yF 48 (213) -++|.+.-.+.+....|. .+ |.+++|+..|||+.|+..-+ T Consensus 6 Y~QI~~~i~~~I~~g~l~pG~kLPse~eLa~~~~VSr~tVR~Al 49 (129) T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGL 49 (129) T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999985999994999489999999697899999999 No 342 >2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71 Probab=30.18 E-value=18 Score=13.50 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999999999999864841214999999848877787631 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) .--.||..-.+--.|.|=...|+.-|+|+++|.-+++.++ T Consensus 17 ~lvavL~~L~~A~~e~~g~~wSLAkl~KRa~vpMStLRR~ 56 (96) T 2obp_A 17 AIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRV 56 (96) T ss_dssp HHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHH T ss_conf 9999999999985237999543999987708967999999 No 343 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=30.15 E-value=18 Score=13.50 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) +.|..+||++.+++++++.+. T Consensus 51 ~~t~~ela~~l~~~~~~vs~~ 71 (142) T 2bv6_A 51 PVNVKKVVTELALDTGTVSPL 71 (142) T ss_dssp EEEHHHHHHHTTCCTTTHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 949999999979887379999 No 344 >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Probab=29.64 E-value=19 Score=13.43 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=26.8 Q ss_pred HHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 99986484-1214999999848877787631589889 Q T0596 18 ELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 18 ~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ..|.+.-| ......+||...|++...|..+|.++-. T Consensus 34 ~~F~~~~~P~~~~~~~La~~~gl~~~~V~~WFqNrR~ 70 (80) T 2da3_A 34 QKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRA 70 (80) T ss_dssp HHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9998738989999999999979097891141376555 No 345 >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=29.35 E-value=17 Score=13.66 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=27.8 Q ss_pred HHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999986484-121499999984887778763158988 Q T0596 16 AVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 16 A~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) --..|....| +......||...|++...|-.+|-++- T Consensus 22 Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70) T 2cra_A 22 LEREYAANKFITKDKRRKISAATSLSERQITIWFQNRR 59 (70) T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHH T ss_conf 99999883899999999999996899113202114355 No 346 >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=28.92 E-value=17 Score=13.71 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=29.4 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999986484-121499999984887778763158988 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++.--..|....| +......||...|++...|..+|-++- T Consensus 19 ~~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70) T 2djn_A 19 LAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKR 59 (70) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHH T ss_conf 99999999987875488999999985998425215570256 No 347 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=28.78 E-value=19 Score=13.33 Aligned_cols=15 Identities=7% Similarity=-0.033 Sum_probs=4.9 Q ss_pred HHHHHHHHHCCCHHH Q ss_conf 499999984887778 Q T0596 29 RLYDIAARLAVSLDE 43 (213) Q Consensus 29 tv~~IA~~aGvs~~t 43 (213) |+.+||+..|+++++ T Consensus 69 s~~~La~~l~~~~~~ 83 (161) T 3e6m_A 69 TVGQLATLGVMEQST 83 (161) T ss_dssp EHHHHHHHTTCCHHH T ss_pred CHHHHHHHHCCCHHH T ss_conf 999999998978879 No 348 >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Probab=28.49 E-value=19 Score=13.29 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=30.6 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +..--..|....| +.....+||...|++...|-.+|-++-. T Consensus 15 ~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~vWFqNrR~ 56 (63) T 2h1k_A 15 LLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM 56 (63) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHEECCHHHHH T ss_conf 999999998679979999999999968592571022675645 No 349 >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 Probab=28.49 E-value=19 Score=13.29 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHHHCCCC---HH-HHHHHHHHHCCCHHHHHHHCCC Q ss_conf 999999999999864841---21-4999999848877787631589 Q T0596 9 RDAIVDTAVELAAHTSWE---AV-RLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~---~~-tv~~IA~~aGvs~~t~y~yF~s 50 (213) -++|.+.-.+.+....|. .+ |.+++|+..|||+.|+-.-+.- T Consensus 13 y~qi~~~i~~~I~~G~~~~G~~LPs~r~La~~~~vSr~tvr~Al~~ 58 (102) T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAV 58 (102) T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTT T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999998499999699868999999979799999999999 No 350 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=28.22 E-value=20 Score=13.26 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=20.1 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHH Q ss_conf 98648412149999998488777876 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIR 45 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y 45 (213) |+=.|....|+.+|++..|||+.-+. T Consensus 31 fGl~~~~~~Tl~eI~~~lgiSrerVR 56 (87) T 1tty_A 31 YGLLDGKPKTLEEVGQYFNVTRERIR 56 (87) T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 17789995669999999698899999 No 351 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=27.51 E-value=20 Score=13.17 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) ++|..+||+..|++++++-+- T Consensus 48 ~~t~~~La~~~~~~~~tvs~~ 68 (138) T 1jgs_A 48 CITPVELKKVLSVDLGALTRM 68 (138) T ss_dssp SBCHHHHHHHHTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 989999999989788689999 No 352 >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus} Probab=27.31 E-value=20 Score=13.14 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999999986484-121499999984887778763158988 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++--.+|.+..| +.....+||+.+|++...|-.+|-++- T Consensus 16 ~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~~WFqNrR 55 (62) T 2vi6_A 16 CALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQR 55 (62) T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999977999989999999990969899246125577 No 353 >3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} Probab=27.03 E-value=21 Score=13.11 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=34.4 Q ss_pred HHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCHHHHHHH Q ss_conf 78999999999999986484---1214999999848877787631 Q T0596 6 DPMRDAIVDTAVELAAHTSW---EAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~---~~~tv~~IA~~aGvs~~t~y~y 47 (213) .-.|+.|.+.-.+.+...-| +.++..+||++.|||++++--- T Consensus 25 ~~~~~~v~~~lr~~I~~g~l~pG~~L~e~~La~~~gvSRtpVReA 69 (237) T 3c7j_A 25 HLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREA 69 (237) T ss_dssp GGHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 548999999999999829999809759999999879496999999 No 354 >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Probab=27.02 E-value=21 Score=13.10 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=30.1 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999986484-1214999999848877787631589889 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +.--..|.+..| +.....+||+..|++...|--+|-++-. T Consensus 14 ~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 54 (60) T 1jgg_A 14 GRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60) T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHH T ss_conf 99999998779999899999999959895472132832667 No 355 >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Probab=27.01 E-value=21 Score=13.10 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=21.5 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 12149999998488777876315898 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ......+||+..|++..-|..+|.++ T Consensus 32 ~~~~k~~La~~~gls~~qV~~WF~N~ 57 (64) T 1du6_A 32 SEEAKEELAKKCGITVSQVSNWFGNK 57 (64) T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999886888989968998 No 356 >2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A* Probab=26.90 E-value=21 Score=13.09 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=20.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .++...|- -.|.++||+++||+..++-+++ T Consensus 70 ~~l~d~~~-~YT~rEvAe~tGv~~e~~rr~w 99 (222) T 2ev1_A 70 HLVGDDGT-YVSAREISENYGVDLELLQRVQ 99 (222) T ss_dssp HHTTCCSC-EECHHHHHHHHTCCHHHHHHHH T ss_pred HHHCCCCC-EECHHHHHHHHCCCHHHHHHHH T ss_conf 76069986-6869999999791999999999 No 357 >2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: e.62.1.2 Probab=26.58 E-value=11 Score=15.24 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=32.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999717899999999999998648412149999998488777876315898 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ||.-...+.+.+.+....++.++. +..+++||++.|||..-+..-.+.. T Consensus 14 ~~~~a~~~~~~~~~r~~a~laenP--~~~~~~iA~~lgVSe~evl~a~p~e 62 (195) T 2hqv_A 14 MSIAAQKNDDDRQARALAALAEKP--DGIVEAIAAKAEVAPAEILAILPQG 62 (195) T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCC------CTTTCCSSSCHHHHHTTSCTT T ss_pred CHHHHHHCHHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCHHHHHHHCCHH T ss_conf 404444173889999999987797--7179999998497999999847986 No 358 >2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii} Probab=26.50 E-value=9.5 Score=15.71 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=23.0 Q ss_pred HCCCCHHHHHHH-HHHHCCCHHHHHHHCC-------CHHHHHHH Q ss_conf 648412149999-9984887778763158-------98899999 Q T0596 22 HTSWEAVRLYDI-AARLAVSLDEIRLYFR-------EKDELIDA 57 (213) Q Consensus 22 e~G~~~~tv~~I-A~~aGvs~~t~y~yF~-------sKe~L~~a 57 (213) ++=|.++|=++- +=+||++-|++||.|- |++.|-.+ T Consensus 11 ~kYF~n~TdrerA~FEaGIklGALyHQFvGtPVs~~sa~slE~A 54 (122) T 2ogf_A 11 KKYFKNLTDRERAVFEGGITLGALFHQFVGTPVSKYNKESLERA 54 (122) T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCEECTTTHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHH T ss_conf 88751398689888863011301331212664381128999999 No 359 >1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Probab=26.11 E-value=21 Score=12.99 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HCCCHHHHHHHCCCHHHH Q ss_conf 17899999999999998648412149999998--488777876315898899 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAAR--LAVSLDEIRLYFREKDEL 54 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~--aGvs~~t~y~yF~sKe~L 54 (213) =++|++.||.+-++.+-+.|- .++=+.|+++ .++|.+|+.+....-|++ T Consensus 15 L~~R~~~IL~~iVe~Yi~tge-PVGSk~L~~~~~l~~SsATIRN~Ma~LE~~ 65 (338) T 1stz_A 15 LNDRQRKVLYCIVREYIENKK-PVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65 (338) T ss_dssp CCHHHHHHHHHHHHHHHHHCS-CBCHHHHHHHSCCCSCHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHCCCCCCHHHHHHHHHHHHHC T ss_conf 089999999999999974299-567899998728998869999999999878 No 360 >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=25.37 E-value=22 Score=12.89 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=26.1 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHC---------------CCHHHHHHHCCCHH Q ss_conf 9999999986484-1214999999848---------------87778763158988 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLA---------------VSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aG---------------vs~~t~y~yF~sKe 52 (213) ++.--.+|.+.-| +.....+||.++| ++..-++.+|.++- T Consensus 19 l~~Le~~F~~n~yP~~~~re~lA~~ln~~~~~~~~~~~~~~~lt~~~V~vWFqNrR 74 (95) T 2cuf_A 19 LAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 74 (95) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999999987998999999999996701100221221003656799999989875 No 361 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Probab=25.25 E-value=22 Score=12.87 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHH Q ss_conf 214999999848877787631 Q T0596 27 AVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~y 47 (213) ..|+.+||+..|++++++.+- T Consensus 50 ~~t~~~La~~l~i~~~~vsr~ 70 (146) T 2gxg_A 50 PKTMAYLANRYFVTQSAITAS 70 (146) T ss_dssp CBCHHHHHHHTTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 969999999989798699999 No 362 >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} Probab=24.55 E-value=23 Score=12.78 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHCCCC---HH-HHHHHHHHHCCCHHHHHHH Q ss_conf 89999999999999864841---21-4999999848877787631 Q T0596 7 PMRDAIVDTAVELAAHTSWE---AV-RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~---~~-tv~~IA~~aGvs~~t~y~y 47 (213) +.-++|.+.-.+.+....|. .+ |.+++|+..|||+.|+..- T Consensus 11 P~y~qI~~~l~~~I~~g~l~~G~~LPs~~~La~~~~VSr~tVr~A 55 (126) T 3by6_A 11 PVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKA 55 (126) T ss_dssp CHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 899999999999998599999399955999999979898999999 No 363 >2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13 Probab=24.26 E-value=23 Score=12.74 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 99999999999998648412149999998488777876315898 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .|.+++..-.+++.++|+ |-.+.|+..||+.+-+-.-...| T Consensus 37 ~Ka~L~~~I~~~I~~~~l---tQ~eAA~~lGi~QprvS~L~~Gk 77 (120) T 2o38_A 37 TKLRLAYALNAVIDRARL---SQAAAAARLGINQPKVSALRNYK 77 (120) T ss_dssp HHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHHCC T ss_conf 999999999999998698---57667666288878876998088 No 364 >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Probab=24.25 E-value=12 Score=14.83 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=9.3 Q ss_pred HHHHHHHHHCCCHHHHHHHC Q ss_conf 49999998488777876315 Q T0596 29 RLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~yF 48 (213) |+.+||+..++++..+.+.| T Consensus 188 tl~eia~~~~i~~k~l~r~~ 207 (345) T 3k7a_M 188 TFKEIQSLIHVKTKEFGKTL 207 (345) T ss_dssp CHHHHHHSSSCCSHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHH T ss_conf 79999988698899999999 No 365 >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Probab=24.00 E-value=23 Score=12.71 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHCC----CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999998648----4121499999984887778763158988 Q T0596 11 AIVDTAVELAAHTS----WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 11 ~Il~AA~~l~~e~G----~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +||+.. |.++. .+..-...||...|++..-|..+|-++- T Consensus 11 ~iL~~~---f~~~~~~PyPs~~e~~~La~~~gL~~~qV~~WF~N~R 53 (60) T 1k61_A 11 RILESW---FAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60) T ss_dssp HHHHHH---HHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHH---HHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999---9975899994999999999997869999999899988 No 366 >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Probab=23.71 E-value=23 Score=12.67 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999999999999-86484121499999984887778763158 Q T0596 9 RDAIVDTAVELA-AHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 9 R~~Il~AA~~l~-~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) ++.++.|.+=+. .+.|.. -|+.+||+.+|+++..+.+.|. T Consensus 51 ~~~~~aAcvy~ACR~~~~p-rt~~eia~~~~~~~k~i~~~~k 91 (200) T 1ais_B 51 IESVMAACVYAACRLLKVP-RTLDEIADIARVDKKEIGRSYR 91 (200) T ss_dssp HHHHHHHHHHHHHHHHTCC-CCHHHHHHHTTSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCC-CCHHHHHHHHCCCHHHHHHHHH T ss_conf 9889999999999864688-6689999997534989999999 No 367 >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Probab=23.58 E-value=23 Score=12.65 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=12.7 Q ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 87778763158988999999999999999 Q T0596 39 VSLDEIRLYFREKDELIDAWFDRADSRML 67 (213) Q Consensus 39 vs~~t~y~yF~sKe~L~~a~~~~~~~~~~ 67 (213) +++..|...+.+-.++...++.....++. T Consensus 107 I~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (250) T 3e6c_C 107 FSEKSLRTVFRTDEDMIFEIFKNYLTKVA 135 (250) T ss_dssp ECHHHHHHHHHHCTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 15877754202699999999999999999 No 368 >2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1 Probab=23.08 E-value=12 Score=14.90 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=17.7 Q ss_pred CCCHHHHHHH-HHHHCCCHHHHHHHCCC Q ss_conf 8412149999-99848877787631589 Q T0596 24 SWEAVRLYDI-AARLAVSLDEIRLYFRE 50 (213) Q Consensus 24 G~~~~tv~~I-A~~aGvs~~t~y~yF~s 50 (213) =|.++|=++- +=+||++-|++||.|-+ T Consensus 5 YF~n~TdrerA~FEaGIklGALyHQFvG 32 (131) T 2iec_A 5 YFKRLSDRERAIFEAGITLGAIYHQFCG 32 (131) T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHEECC T ss_conf 5420882888888630123013311036 No 369 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=23.00 E-value=24 Score=12.57 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=18.1 Q ss_pred CHHHHHHHHHHHCCCHHHHHHH Q ss_conf 1214999999848877787631 Q T0596 26 EAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~y 47 (213) .++|+.+||+..+++++++.+- T Consensus 61 ~~~t~~ela~~~~~~~stvs~~ 82 (207) T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNF 82 (207) T ss_dssp TSEEHHHHHHHTTCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9989999999988887279999 No 370 >3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Probab=22.86 E-value=24 Score=12.55 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=28.6 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH Q ss_conf 763158988999999999999999887543------20134578899999 Q T0596 44 IRLYFREKDELIDAWFDRADSRMLKEAESA------GFLDLVASERIHHL 87 (213) Q Consensus 44 ~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 87 (213) .||.|+|.++|..++.+.+.+.+...+... ......|......+ T Consensus 4 ~~h~~~~~~~l~~~~a~~i~~~~~~~i~~~~~~~l~lsGGstp~~ly~~L 53 (232) T 3lhi_A 4 VWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNAL 53 (232) T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH T ss_conf 69976999999999999999999999997799899987975299999999 No 371 >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Probab=22.80 E-value=24 Score=12.54 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=29.9 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 9999999986484-12149999998488777876315898899 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +..--.+|.+.-| +.-...+||+..|++...|..+|-||-.- T Consensus 46 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~vWFqNrR~k 88 (97) T 1b72_A 46 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 88 (97) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHH T ss_conf 9999999998799878899998886099966711227989889 No 372 >2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus} Probab=22.66 E-value=22 Score=12.84 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH Q ss_conf 999999999999864841214999999848877 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSL 41 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~ 41 (213) -..|...-+..+.+.||=..++.+|+...|++. T Consensus 21 e~~Ia~~iI~~Ld~~GyL~~~~~ei~~~l~~~~ 53 (130) T 2k9m_A 21 EQELALELLNYLNEKGFLSKSVEEISDVLRCSV 53 (130) T ss_dssp HHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH T ss_pred HHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCH T ss_conf 999999999708989825678899998847888 No 373 >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=22.63 E-value=24 Score=12.52 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 99999999986484-1214999999848877787631589889 Q T0596 12 IVDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 12 Il~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) -+.+--..|.+..| +.....+||...|++...|-.+|.++-. T Consensus 28 Ql~~Le~~F~~~~yP~~~~r~~LA~~lgL~~~qV~vWFqNrR~ 70 (80) T 2dmt_A 28 QLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 70 (80) T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHH T ss_conf 9999999999867877889999999949891306220474799 No 374 >2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} Probab=22.53 E-value=25 Score=12.50 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHCCC---CHH-HHHHHHHHHCCCHHHHHH Q ss_conf 8999999999999986484---121-499999984887778763 Q T0596 7 PMRDAIVDTAVELAAHTSW---EAV-RLYDIAARLAVSLDEIRL 46 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~---~~~-tv~~IA~~aGvs~~t~y~ 46 (213) +.-++|.+.-.+.+.++-| +.+ |.+++|++-|||++|+.. T Consensus 10 Ply~qI~~~i~~~I~~G~l~pG~~LPsE~~La~~~~VSr~TVR~ 53 (243) T 2wv0_A 10 PIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQ 53 (243) T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 88999999999999829999939993699999997969999999 No 375 >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=22.47 E-value=17 Score=13.70 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999986484-1214999999848877787631589889 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ..--..|.+..| +......||...|++...|-.+|.++-. T Consensus 16 ~~Le~~F~~n~yP~~~~r~~LA~~lgl~~~qI~~WFqNrR~ 56 (68) T 1yz8_P 16 QQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 56 (68) T ss_dssp HHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999879898999999999959989998997485689 No 376 >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Probab=22.42 E-value=25 Score=12.49 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=29.7 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999986484-12149999998488777876315898899 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) .+--..|.+..| +......||...|++...|-.+|-++-.= T Consensus 15 ~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFQNrR~k 56 (68) T 1zq3_P 15 AELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 56 (68) T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 999999987788878899999999087589999980668988 No 377 >2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.08A {Picrophilus torridus dsm 9790} SCOP: d.316.1.1 Probab=21.93 E-value=22 Score=12.90 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=21.3 Q ss_pred CCCCHHHHH-HHHHHHCCCHHHHHHHCC-------CHHHHHHHH Q ss_conf 484121499-999984887778763158-------988999999 Q T0596 23 TSWEAVRLY-DIAARLAVSLDEIRLYFR-------EKDELIDAW 58 (213) Q Consensus 23 ~G~~~~tv~-~IA~~aGvs~~t~y~yF~-------sKe~L~~a~ 58 (213) +=| ++|=+ .-+=+||++-|++||.|- |++.|-.++ T Consensus 8 kYF-n~TdrerA~FEaGIklGaLyHQFvGtPVs~~sa~slE~AI 50 (121) T 2i52_A 8 KYF-NCTDIQRAFFEAGIKLGAIFHQYTGIPVNSENASMAEEFI 50 (121) T ss_dssp GGC-CSCHHHHHHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHH T ss_pred HHC-CCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH T ss_conf 865-7983889887530113003202126643811289999999 No 378 >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Probab=21.85 E-value=25 Score=12.40 Aligned_cols=41 Identities=12% Similarity=0.295 Sum_probs=30.7 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +.+--..|.+..| +......||...|++...|-.+|.++-. T Consensus 15 l~~Le~~F~~n~~Ps~~~r~~LA~~lgl~~~qV~~WFqNrR~ 56 (61) T 2hdd_A 15 LARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHH T ss_conf 999999998779989999999999979698996672443676 No 379 >2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8 Probab=21.77 E-value=15 Score=14.22 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 789999999999999864841214999999848877787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) -+.|.+|+. .+-.. ++.|-++||++.|+|+.++-++-.. T Consensus 19 ~~~R~~il~---~lyy~---~~l~q~eIA~~lg~Sr~~V~r~l~~ 57 (345) T 2o0m_A 19 LQERFQILR---NIYWM---QPIGRRSLSETMGITERVLRTETDV 57 (345) T ss_dssp --------------------------------------------- T ss_pred HHHHHHHHH---HHHHC---CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999---99861---8989999998869988899999999 No 380 >1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2 Probab=21.66 E-value=14 Score=14.35 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=16.0 Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHH Q ss_conf 8648412149999998488777876 Q T0596 21 AHTSWEAVRLYDIAARLAVSLDEIR 45 (213) Q Consensus 21 ~e~G~~~~tv~~IA~~aGvs~~t~y 45 (213) .-.|....|+.+|++..|||+.-+. T Consensus 32 Gl~~~~~~tl~ei~~~lgvSrerVR 56 (81) T 1tlh_B 32 GIDMNTDYTLEEVGKQFDVTRERIR 56 (81) T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 7898875669999999897899999 No 381 >2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157} Probab=21.10 E-value=26 Score=12.29 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 21499999984887778763158988 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ..++++||++.|||..-+-..+|... T Consensus 15 ~~~~~~~A~~lgvSe~ell~alp~~~ 40 (164) T 2ovi_A 15 DGTLEVVAEQYNTTLLEVVRNLPSST 40 (164) T ss_dssp SSCHHHHHHHTTSCHHHHHHTSTTCE T ss_pred CCHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 83699999983999999998489444 No 382 >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Probab=21.04 E-value=26 Score=12.28 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999986484-121499999984887778763158988 Q T0596 12 IVDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 12 Il~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) -+..--..|.+..| +.-...+||+..|++...|-.+|-++- T Consensus 31 Ql~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~iWFqNrR 72 (81) T 1b8i_A 31 QTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRR 72 (81) T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCHHHH T ss_conf 999999999887999999999999990999778212255556 No 383 >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} Probab=20.83 E-value=26 Score=12.25 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=22.4 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----CCCHHHHHHH Q ss_conf 7178999999999999986484121499999984-----8877787631 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARL-----AVSLDEIRLY 47 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~a-----Gvs~~t~y~y 47 (213) +.++.|..|++. +.+.+ ..|..+|-+.+ .++.+|+|+- T Consensus 16 r~T~~R~~Il~~----L~~~~--h~ta~eI~~~l~~~~~~i~~~TVYR~ 58 (145) T 3eyy_A 16 RLTPQRQLVLEA----VDTLE--HATPDDILGEVRKTASGINISTVYRT 58 (145) T ss_dssp CCCHHHHHHHHH----HHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHH T ss_pred CCCHHHHHHHHH----HHHCC--CCCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 869999999999----97279--98999999999975888654889999 No 384 >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Probab=20.78 E-value=26 Score=12.25 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=30.3 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH---HCCC Q ss_conf 999999986484121499999984887778763---1589 Q T0596 14 DTAVELAAHTSWEAVRLYDIAARLAVSLDEIRL---YFRE 50 (213) Q Consensus 14 ~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~---yF~s 50 (213) --.++.+.+.|...+|=.+||+.+|++...+.+ ||+. T Consensus 20 ~r~L~~l~~~g~~~iSS~eLa~~~gi~~~qVRKDls~fG~ 59 (215) T 2vt3_A 20 YRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGA 59 (215) T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 9999999985994797999999969899999989998643 No 385 >2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Probab=20.74 E-value=26 Score=12.24 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=28.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 9997178999999999999986484121499999984887778763 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) |+.-.++..|+||++-. +-| ..++..+||+.+||.+..+-. T Consensus 4 ml~~~~d~eqkVL~~L~----eaG-~p~~a~~iA~~~gv~KKeVnk 44 (67) T 2heo_A 4 MLSTGDNLEQKILQVLS----DDG-GPVAIFQLVKKCQVPKKTLNQ 44 (67) T ss_dssp -----CHHHHHHHHHHH----HHC-SCEEHHHHHHHHCSCHHHHHH T ss_pred CCCCCCCHHHHHHHHHH----HCC-CCCCHHHHHHHHCCCHHHHHH T ss_conf 12233478999999999----768-978799999998878899999 No 386 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=20.41 E-value=27 Score=12.19 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 178999999999999986484121499999984887778763158 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+..|+.=...-++++.++| .+|=.+||+..|+|++|+.+... T Consensus 33 ~~~ik~~N~~~Il~~i~~~g--~iSR~eLa~~tgLS~~TVs~iv~ 75 (429) T 1z05_A 33 IDHIKQINAGRVYKLIDQKG--PISRIDLSKESELAPASITKITR 75 (429) T ss_dssp -CHHHHHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999999999859--91899999887969999999999 No 387 >2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; NP_744337.1, putative tRNA-(MS(2)IO(6)A)-hydroxylase, structural genomics, PSI-2; 2.05A {Pseudomonas putida KT2440} SCOP: a.25.1.7 Probab=20.11 E-value=27 Score=12.14 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=22.9 Q ss_pred HHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 98488777876315898899999999999999988 Q T0596 35 ARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKE 69 (213) Q Consensus 35 ~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~ 69 (213) |+|+..-+.+|+ |+++.+|+..+.+-+.+++... T Consensus 41 KAA~~Alsli~r-Yp~~~~Lv~~ms~LarEEL~HF 74 (206) T 2itb_A 41 KAASTALSLIAK-YNTHLDLINMMSRLAREELVHH 74 (206) T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999999997-8990899999999999999999 Done!