Query T0596 3NI7, Nitrosomonas europaea ATCC 19718, 213 residues Match_columns 213 No_of_seqs 102 out of 12091 Neff 10.0 Searched_HMMs 15564 Date Mon Jul 5 09:14:45 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0596.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0596.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2gfna1 a.4.1.9 (A:4-80) Proba 99.5 6E-14 3.9E-18 125.6 9.2 73 3-75 2-74 (77) 2 d2fd5a1 a.4.1.9 (A:1-76) Proba 99.5 8.9E-14 5.7E-18 124.2 8.7 73 1-73 1-73 (76) 3 d2o7ta1 a.4.1.9 (A:1-78) Trans 99.5 1.4E-13 8.8E-18 122.8 9.3 74 1-74 1-74 (78) 4 d1t33a1 a.4.1.9 (A:1-88) Putat 99.5 1.3E-13 8.2E-18 123.0 8.1 72 1-73 6-77 (88) 5 d1t56a1 a.4.1.9 (A:22-94) Ethr 99.4 2.9E-13 1.9E-17 120.2 9.5 68 6-73 2-69 (73) 6 d2g7sa1 a.4.1.9 (A:3-76) Putat 99.4 3.2E-13 2.1E-17 119.9 9.4 69 4-72 1-69 (74) 7 d1ui5a1 a.4.1.9 (A:5-75) A-fac 99.4 2.8E-13 1.8E-17 120.3 8.8 66 3-68 1-66 (71) 8 d2fbqa1 a.4.1.9 (A:2-80) Trans 99.4 3.1E-13 2E-17 120.0 8.9 70 5-74 2-71 (79) 9 d3c07a1 a.4.1.9 (A:15-89) Puta 99.4 3.3E-13 2.1E-17 119.7 8.7 70 4-73 2-71 (75) 10 d2oi8a1 a.4.1.9 (A:8-86) Putat 99.4 5.6E-13 3.6E-17 118.0 9.5 72 3-74 5-76 (79) 11 d1v7ba1 a.4.1.9 (A:1-74) Trans 99.4 4.2E-13 2.7E-17 119.0 8.4 70 5-74 2-71 (74) 12 d2hyja1 a.4.1.9 (A:8-82) Putat 99.4 7.8E-13 5E-17 116.9 9.7 70 4-73 2-71 (75) 13 d2hkua1 a.4.1.9 (A:18-87) Puta 99.4 6.4E-13 4.1E-17 117.5 8.2 66 7-73 1-66 (70) 14 d1rkta1 a.4.1.9 (A:2-82) Hypot 99.4 9E-13 5.8E-17 116.4 8.9 70 4-73 8-77 (81) 15 d1vi0a1 a.4.1.9 (A:6-77) Hypot 99.4 1.1E-12 7E-17 115.7 8.8 67 7-73 1-67 (72) 16 d2d6ya1 a.4.1.9 (A:7-74) Putat 99.4 5.1E-13 3.3E-17 118.3 6.9 65 6-70 1-65 (68) 17 d1pb6a1 a.4.1.9 (A:14-85) Hypo 99.4 1.1E-12 7.1E-17 115.7 8.4 67 6-72 3-69 (72) 18 d2g3ba1 a.4.1.9 (A:2-73) Putat 99.4 7.8E-13 5E-17 116.8 7.2 66 6-71 1-66 (72) 19 d2gena1 a.4.1.9 (A:6-75) Proba 99.4 1.3E-12 8.3E-17 115.1 8.1 67 8-74 1-67 (70) 20 d2fx0a1 a.4.1.9 (A:4-76) Hemol 99.3 1.1E-12 7.3E-17 115.6 7.2 58 5-62 2-59 (73) 21 d2np5a1 a.4.1.9 (A:9-77) Trans 99.3 2.3E-12 1.5E-16 113.2 8.8 66 8-73 2-67 (69) 22 d1jt6a1 a.4.1.9 (A:2-72) Multi 99.3 1.6E-12 1E-16 114.4 8.0 66 7-72 1-66 (71) 23 d1zk8a1 a.4.1.9 (A:6-77) Trans 99.3 2.1E-12 1.3E-16 113.6 8.2 66 8-73 4-69 (72) 24 d1sgma1 a.4.1.9 (A:5-77) Putat 99.3 2E-12 1.3E-16 113.7 7.7 67 7-73 2-69 (73) 25 d2i10a1 a.4.1.9 (A:10-78) Puta 99.3 5.4E-13 3.5E-17 118.1 4.6 65 9-73 2-66 (69) 26 d2id6a1 a.4.1.9 (A:1-75) Trans 99.3 1.8E-12 1.1E-16 114.1 7.1 68 7-74 3-70 (75) 27 d2iu5a1 a.4.1.9 (A:1-71) Trans 99.3 3.9E-12 2.5E-16 111.4 8.3 66 3-68 2-67 (71) 28 d2id3a1 a.4.1.9 (A:13-80) Puta 99.3 2.9E-12 1.9E-16 112.4 7.5 63 4-66 3-65 (68) 29 d2fq4a1 a.4.1.9 (A:9-77) Trans 99.3 3.6E-12 2.3E-16 111.6 7.6 62 4-65 1-62 (69) 30 d1z0xa1 a.4.1.9 (A:4-71) Trans 99.3 2.8E-12 1.8E-16 112.5 6.4 60 8-67 3-63 (68) 31 d2vkva1 a.4.1.9 (A:6-67) Tetra 99.2 5.9E-12 3.8E-16 110.0 6.0 58 9-66 1-58 (62) 32 d2g7la1 a.4.1.9 (A:16-83) Puta 99.2 3.9E-12 2.5E-16 111.4 3.8 61 5-65 2-62 (68) 33 d2g7ga1 a.4.1.9 (A:9-73) Putat 99.1 1.4E-11 9.2E-16 107.0 4.4 57 8-66 2-58 (65) 34 d2np3a1 a.4.1.9 (A:35-99) Puta 99.1 1.2E-11 7.8E-16 107.5 2.4 59 12-71 1-59 (65) 35 d3c07a2 a.121.1.1 (A:90-235) P 97.5 0.004 2.6E-07 40.9 14.4 112 79-190 2-118 (146) 36 d1ijwc_ a.4.1.2 (C:) HIN recom 95.8 0.0049 3.2E-07 40.2 3.9 35 13-51 11-45 (47) 37 d1jhfa1 a.4.5.2 (A:2-72) LexA 92.7 0.088 5.7E-06 30.4 4.7 44 6-50 4-48 (71) 38 d2hsga1 a.35.1.5 (A:2-58) Gluc 92.4 0.037 2.4E-06 33.3 2.4 38 27-64 1-38 (57) 39 d1biaa1 a.4.5.1 (A:1-63) Bioti 91.7 0.075 4.8E-06 30.9 3.3 44 3-52 1-44 (63) 40 d1qpza1 a.35.1.5 (A:2-58) Puri 91.1 0.042 2.7E-06 32.9 1.5 36 28-63 1-36 (57) 41 d1efaa1 a.35.1.5 (A:2-60) Lac 90.8 0.04 2.6E-06 33.1 1.2 38 27-64 2-39 (59) 42 d1bl0a1 a.4.1.8 (A:9-62) MarA 89.2 0.14 9.1E-06 28.8 2.9 41 11-51 3-43 (54) 43 d2ao9a1 a.4.1.17 (A:13-132) Ph 88.9 0.57 3.7E-05 24.0 5.8 50 3-52 12-62 (120) 44 d1biaa1 a.4.5.1 (A:1-63) Bioti 88.9 0.18 1.2E-05 27.9 3.3 41 4-50 2-42 (63) 45 d1stza1 a.4.5.51 (A:14-100) He 88.9 0.21 1.4E-05 27.4 3.6 47 6-53 3-51 (87) 46 d1d5ya1 a.4.1.8 (A:3-56) Rob t 88.6 0.12 7.8E-06 29.3 2.2 42 10-51 2-43 (54) 47 d1j5ya1 a.4.5.1 (A:3-67) Putat 88.1 0.22 1.4E-05 27.3 3.3 45 1-50 1-45 (65) 48 d2p4wa1 a.4.5.64 (A:1-194) Tra 87.5 0.33 2.1E-05 25.9 3.9 41 5-52 13-53 (194) 49 d1uxda_ a.35.1.5 (A:) Fructose 87.1 0.074 4.8E-06 31.0 0.4 26 28-53 1-26 (59) 50 d2ezla_ a.4.1.2 (A:) Ibeta sub 86.4 0.6 3.9E-05 23.8 4.7 45 4-49 30-75 (99) 51 d1ulya_ a.4.5.58 (A:) Hypothet 85.9 0.31 2E-05 26.1 3.0 39 6-51 18-56 (190) 52 d1mkma1 a.4.5.33 (A:1-75) Tran 84.9 0.42 2.7E-05 25.0 3.4 34 17-51 11-44 (75) 53 d1z05a1 a.4.5.63 (A:10-80) Tra 84.7 0.76 4.9E-05 23.1 4.6 42 7-50 2-43 (71) 54 d2b5aa1 a.35.1.3 (A:1-77) Regu 83.6 1.3 8.1E-05 21.3 5.3 48 4-54 3-50 (77) 55 d2a6ca1 a.35.1.13 (A:1-69) HTH 83.4 1 6.5E-05 22.1 4.8 44 8-54 3-47 (69) 56 d1y9qa1 a.35.1.8 (A:4-82) Prob 83.1 0.99 6.3E-05 22.2 4.6 54 8-64 5-58 (79) 57 d1xs9a_ i.11.1.1 (A:) Ternary 82.9 0.074 4.7E-06 31.0 -1.2 54 1-54 1-54 (129) 58 d1r1ta_ a.4.5.5 (A:) SmtB repr 82.9 0.5 3.2E-05 24.5 3.0 39 6-51 22-60 (98) 59 d2o38a1 a.35.1.13 (A:28-116) H 82.2 1.2 7.5E-05 21.6 4.7 47 6-55 6-53 (89) 60 d2gena2 a.121.1.1 (A:76-193) P 81.4 1.6 0.00011 20.4 14.5 100 79-179 2-108 (118) 61 d1pdnc_ a.4.1.5 (C:) Paired pr 81.4 0.65 4.2E-05 23.6 3.1 37 5-49 18-54 (123) 62 d2jn6a1 a.4.1.19 (A:1-89) Unch 81.2 0.76 4.9E-05 23.0 3.5 37 6-48 8-44 (89) 63 d2ev0a1 a.4.5.24 (A:2-62) Mang 81.2 1.1 7.3E-05 21.7 4.3 41 6-48 2-42 (61) 64 d1r1ua_ a.4.5.5 (A:) Metal-sen 80.9 0.94 6E-05 22.4 3.8 40 5-51 16-55 (94) 65 d1gdta1 a.4.1.2 (A:141-183) ga 80.0 0.53 3.4E-05 24.3 2.3 30 17-49 11-40 (43) 66 d2np5a2 a.121.1.1 (A:78-195) T 79.3 1.9 0.00012 19.9 8.1 43 144-186 68-111 (118) 67 d1k78a1 a.4.1.5 (A:19-81) Pax- 79.2 1.2 7.5E-05 21.6 3.8 36 5-48 16-51 (63) 68 d1u2wa1 a.4.5.5 (A:12-119) Cad 78.8 1.3 8.4E-05 21.2 4.0 40 5-50 29-68 (108) 69 d2pg4a1 a.4.5.48 (A:1-92) Unch 78.7 1.5 9.6E-05 20.8 4.3 43 11-57 15-57 (92) 70 d1vi0a2 a.121.1.1 (A:78-194) H 78.2 2 0.00013 19.7 10.9 98 79-177 1-105 (117) 71 d1lmb3_ a.35.1.2 (3:) lambda C 77.8 1.5 9.6E-05 20.8 4.0 59 1-62 2-60 (87) 72 d1ub9a_ a.4.5.28 (A:) Hypothet 77.5 1.3 8.4E-05 21.2 3.7 40 6-51 15-54 (100) 73 d2isya1 a.4.5.24 (A:2-64) Iron 76.1 2 0.00013 19.7 4.4 40 7-48 5-44 (63) 74 d2o3fa1 a.4.1.20 (A:1-83) Puta 73.9 0.96 6.1E-05 22.3 2.2 37 25-61 34-75 (83) 75 d1ku9a_ a.4.5.36 (A:) DNA-bind 73.1 2.7 0.00017 18.7 5.3 43 7-49 6-63 (151) 76 d1s7oa_ a.4.13.3 (A:) Hypothet 72.8 0.99 6.4E-05 22.2 2.1 38 18-55 23-60 (106) 77 d1xsva_ a.4.13.3 (A:) Hypothet 71.8 1.3 8.4E-05 21.2 2.5 33 18-50 25-57 (106) 78 d1rp3a2 a.4.13.2 (A:164-234) S 71.6 1.4 8.7E-05 21.1 2.5 31 18-48 28-58 (71) 79 d1a04a1 a.4.6.2 (A:150-216) Ni 69.4 1.5 9.4E-05 20.8 2.3 24 27-50 21-44 (67) 80 d2cfxa1 a.4.5.32 (A:1-63) Tran 69.1 1.7 0.00011 20.3 2.6 40 6-51 4-43 (63) 81 d1bl0a2 a.4.1.8 (A:63-124) Mar 68.4 3.4 0.00022 18.0 4.3 38 13-53 3-41 (62) 82 d1r71a_ a.4.14.1 (A:) Transcri 68.3 3 0.00019 18.4 3.7 32 14-49 21-52 (114) 83 d1r8da_ a.6.1.3 (A:) Multidrug 68.2 1.6 0.0001 20.5 2.3 26 28-55 3-28 (109) 84 d2d1ha1 a.4.5.50 (A:1-109) Hyp 67.5 3.5 0.00022 17.9 3.9 31 19-51 30-60 (109) 85 d1fsea_ a.4.6.2 (A:) Germinati 67.4 1.7 0.00011 20.3 2.4 26 26-51 18-43 (67) 86 d2auwa1 a.35.1.10 (A:88-154) H 65.8 1.9 0.00012 19.9 2.3 27 27-53 14-40 (67) 87 d1l3la1 a.4.6.2 (A:170-234) Qu 65.7 1.9 0.00012 19.9 2.3 25 27-51 19-43 (65) 88 d2a61a1 a.4.5.28 (A:5-143) Tra 65.2 3 0.00019 18.4 3.2 31 17-49 36-66 (139) 89 d1b0na2 a.35.1.3 (A:1-68) SinR 65.1 1.7 0.00011 20.3 2.0 32 18-52 8-39 (68) 90 d1q06a_ a.6.1.3 (A:) Transcrip 65.0 2 0.00013 19.9 2.3 20 28-47 1-20 (127) 91 d1utxa_ a.35.1.3 (A:) Putative 65.0 1.8 0.00012 20.1 2.1 33 19-54 9-41 (66) 92 d1r69a_ a.35.1.2 (A:) 434 C1 r 64.8 1.8 0.00012 20.1 2.0 31 19-52 9-39 (63) 93 d1umqa_ a.4.1.12 (A:) Photosyn 64.8 3.5 0.00023 17.9 3.5 34 8-48 21-54 (60) 94 d1i1ga1 a.4.5.32 (A:2-61) LprA 64.7 2.3 0.00015 19.2 2.6 32 18-51 10-41 (60) 95 d1or7a1 a.4.13.2 (A:120-187) S 63.6 2.4 0.00016 19.1 2.5 32 17-48 24-55 (68) 96 d1yioa1 a.4.6.2 (A:131-200) Re 63.6 2.2 0.00014 19.4 2.3 25 26-50 26-50 (70) 97 d1r8ea1 a.6.1.3 (A:3-120) Tran 63.0 2.2 0.00014 19.4 2.2 26 28-55 4-29 (118) 98 d2ppxa1 a.35.1.3 (A:30-91) Unc 62.9 2.3 0.00015 19.3 2.3 26 27-52 12-37 (62) 99 d2r1jl1 a.35.1.2 (L:3-68) P22 62.9 2 0.00013 19.7 2.0 40 18-60 10-49 (66) 100 d2cg4a1 a.4.5.32 (A:4-66) Regu 62.7 2.9 0.00019 18.5 2.8 39 7-51 5-43 (63) 101 d2croa_ a.35.1.2 (A:) cro 434 61.6 2.2 0.00014 19.5 2.0 32 18-52 10-41 (65) 102 d1y7ya1 a.35.1.3 (A:5-73) Rest 61.6 4.4 0.00028 17.1 5.2 41 12-55 10-50 (69) 103 d1sfxa_ a.4.5.50 (A:) Hypothet 61.5 1.7 0.00011 20.3 1.4 31 18-50 27-57 (109) 104 d2gaua1 a.4.5.4 (A:152-232) Tr 61.5 4.4 0.00028 17.1 3.7 45 7-51 1-53 (81) 105 d1hlva1 a.4.1.7 (A:1-66) DNA-b 61.3 3.3 0.00021 18.1 2.9 35 22-57 21-55 (66) 106 d1r71a_ a.4.14.1 (A:) Transcri 61.2 4.5 0.00029 17.0 3.9 33 14-50 21-53 (114) 107 d2cyya1 a.4.5.32 (A:5-64) Puta 60.8 3.2 0.00021 18.1 2.8 38 8-51 4-41 (60) 108 d1vz0a1 a.4.14.1 (A:116-208) P 60.8 4.5 0.00029 17.0 3.9 32 14-49 10-41 (93) 109 d2hr3a1 a.4.5.28 (A:2-146) Pro 60.2 4.6 0.0003 16.9 3.5 30 18-48 41-70 (145) 110 d2fug21 c.47.1.21 (2:3-180) NA 59.3 3.2 0.00021 18.1 2.5 11 30-40 44-54 (178) 111 d3broa1 a.4.5.28 (A:3-137) Tra 56.7 5.2 0.00034 16.5 3.6 31 16-46 34-64 (135) 112 d1lvaa3 a.4.5.35 (A:511-574) C 56.0 5.4 0.00035 16.4 4.4 39 9-47 5-43 (64) 113 d2ofya1 a.35.1.3 (A:3-84) Puta 55.2 5.5 0.00036 16.3 4.2 35 13-51 15-49 (82) 114 d1x57a1 a.35.1.12 (A:8-85) End 54.5 4 0.00026 17.4 2.3 33 19-54 14-46 (78) 115 d2icta1 a.35.1.3 (A:8-94) Anti 54.0 2.7 0.00017 18.7 1.4 40 18-60 8-47 (87) 116 d2v4jc1 d.203.1.1 (C:3-105) Ds 53.7 5.8 0.00037 16.1 5.2 48 6-54 41-88 (103) 117 d1g2ha_ a.4.1.12 (A:) Transcri 53.1 3.8 0.00024 17.6 2.0 33 9-48 22-54 (61) 118 d1s3ja_ a.4.5.28 (A:) Putative 52.4 6.1 0.00039 16.0 3.1 28 18-47 42-69 (143) 119 d2fxaa1 a.4.5.28 (A:6-167) Pro 52.3 6.1 0.00039 16.0 3.0 28 17-46 47-74 (162) 120 d2fbia1 a.4.5.28 (A:5-140) Pro 50.2 6.5 0.00042 15.8 3.0 29 17-47 36-64 (136) 121 d1p4xa2 a.4.5.28 (A:126-250) S 49.8 6.6 0.00042 15.7 3.2 32 17-48 39-70 (125) 122 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 49.5 6.7 0.00043 15.7 3.7 30 23-52 44-73 (80) 123 d1le8a_ a.4.1.1 (A:) Mating ty 49.4 6.7 0.00043 15.7 3.1 39 11-52 10-49 (53) 124 d1uhsa_ a.4.1.1 (A:) Homeodoma 48.9 6.8 0.00044 15.6 3.2 41 14-54 14-56 (72) 125 d1pb6a2 a.121.1.1 (A:86-211) H 48.3 6.9 0.00045 15.5 9.9 38 78-115 2-39 (126) 126 d1p4wa_ a.4.6.2 (A:) Transcrip 48.3 5.4 0.00035 16.4 2.2 25 26-50 36-60 (87) 127 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 48.0 7 0.00045 15.5 3.4 41 13-53 12-53 (58) 128 d2cqxa1 a.4.1.1 (A:8-66) LAG1 47.4 6.6 0.00043 15.7 2.5 37 17-53 17-55 (59) 129 d3ctaa1 a.4.5.28 (A:5-89) Ta10 47.4 5.6 0.00036 16.3 2.2 26 25-50 19-44 (85) 130 d1t56a2 a.121.1.1 (A:95-214) E 47.4 7.2 0.00046 15.4 13.8 105 77-182 2-113 (120) 131 d2dt5a1 a.4.5.38 (A:4-77) Tran 46.7 7.3 0.00047 15.4 3.3 32 15-46 13-44 (74) 132 d1x2ma1 a.4.1.1 (A:8-59) Lag1 46.1 6.9 0.00044 15.6 2.5 36 18-53 10-47 (52) 133 d1rzsa_ a.35.1.2 (A:) cro p22 45.7 6.4 0.00041 15.8 2.3 19 29-47 12-30 (61) 134 d1nera_ a.35.1.2 (A:) Ner {Bac 45.0 7.7 0.0005 15.2 3.2 34 26-59 21-58 (74) 135 d1ft9a1 a.4.5.4 (A:134-213) CO 44.3 6.9 0.00045 15.5 2.3 44 7-50 1-53 (80) 136 d1ji8a_ d.203.1.1 (A:) DsrC, t 43.9 3.3 0.00021 18.1 0.5 45 7-52 50-94 (111) 137 d1ji8a_ d.203.1.1 (A:) DsrC, t 43.4 4.1 0.00026 17.4 1.0 46 6-52 49-94 (111) 138 d1etxa_ a.4.1.12 (A:) FIS prot 41.7 8.2 0.00052 15.0 2.3 13 33-45 68-80 (89) 139 d1jgsa_ a.4.5.28 (A:) Multiple 41.5 8.7 0.00056 14.8 3.5 28 17-46 40-67 (138) 140 d2hoea1 a.4.5.63 (A:10-71) N-a 41.3 8.7 0.00056 14.8 3.4 30 17-49 5-34 (62) 141 d1lj9a_ a.4.5.28 (A:) Transcri 41.3 8.7 0.00056 14.8 3.3 28 18-47 36-63 (144) 142 d1au7a1 a.4.1.1 (A:103-160) Pi 41.3 6.1 0.00039 16.0 1.6 40 14-53 12-52 (58) 143 d1i5za1 a.4.5.4 (A:138-206) Ca 41.1 8.8 0.00056 14.7 2.6 44 8-51 2-53 (69) 144 d1z6ra1 a.4.5.63 (A:12-81) Mlc 40.9 8.8 0.00057 14.7 4.3 37 10-48 4-40 (70) 145 d2etha1 a.4.5.28 (A:1-140) Put 40.0 9.1 0.00058 14.6 3.2 28 18-47 39-66 (140) 146 d2bv6a1 a.4.5.28 (A:5-140) Tra 39.9 9.1 0.00059 14.6 2.5 29 18-48 41-69 (136) 147 d1z91a1 a.4.5.28 (A:8-144) Org 39.6 9.2 0.00059 14.6 2.6 30 18-49 40-69 (137) 148 d1b72a_ a.4.1.1 (A:) Homeobox 39.2 9.3 0.0006 14.5 2.9 42 13-54 39-81 (88) 149 d1ku3a_ a.4.13.2 (A:) Sigma70 39.0 9.4 0.0006 14.5 2.4 27 20-46 21-47 (61) 150 d2hyja2 a.121.1.1 (A:83-200) P 38.7 9.5 0.00061 14.5 12.6 104 79-183 2-116 (118) 151 d2hs5a1 a.4.5.6 (A:25-93) Puta 38.4 9.6 0.00062 14.5 2.5 39 9-47 4-45 (69) 152 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 37.8 9.8 0.00063 14.4 2.6 41 12-52 19-60 (67) 153 d2frha1 a.4.5.28 (A:102-216) P 37.5 9.9 0.00063 14.3 2.8 29 19-47 41-69 (115) 154 d3bwga1 a.4.5.6 (A:5-82) Trans 37.1 10 0.00064 14.3 3.6 38 11-48 2-43 (78) 155 d2d6ya2 a.121.1.1 (A:75-192) P 36.6 10 0.00065 14.2 7.1 28 84-111 4-31 (118) 156 d1xr4a1 c.124.1.2 (A:1-236) Pu 35.6 6.7 0.00043 15.7 1.1 38 28-65 44-84 (236) 157 d1zk8a2 a.121.1.1 (A:78-182) T 35.3 11 0.00068 14.1 10.4 76 80-162 3-78 (105) 158 d1e3oc1 a.4.1.1 (C:104-160) Oc 34.9 8.9 0.00057 14.7 1.6 39 15-53 12-51 (57) 159 d2ecca1 a.4.1.1 (A:1-76) Homeo 34.5 11 0.0007 14.0 3.1 42 10-54 15-57 (76) 160 d2ecba1 a.4.1.1 (A:8-83) Zinc 34.2 9 0.00058 14.7 1.5 38 16-53 19-57 (76) 161 d1v4ra1 a.4.5.6 (A:1-100) Tran 34.2 11 0.00071 14.0 3.4 41 10-50 12-56 (100) 162 d1ntca_ a.4.1.12 (A:) DNA-bind 34.2 7.6 0.00049 15.2 1.2 18 29-46 66-83 (91) 163 d1hsja1 a.4.5.28 (A:373-487) S 34.1 11 0.00071 14.0 2.8 31 17-47 38-68 (115) 164 d2esna1 a.4.5.37 (A:3-91) Prob 33.3 11 0.00071 14.0 1.9 27 29-55 22-48 (89) 165 d1p4xa1 a.4.5.28 (A:1-125) Sta 33.2 11 0.00073 13.9 2.3 31 18-48 41-71 (125) 166 d1i3ja_ d.285.1.1 (A:) DNA-bin 32.6 10 0.00066 14.2 1.6 47 5-51 35-88 (96) 167 d1zyba1 a.4.5.4 (A:148-220) Pr 32.2 9.2 0.00059 14.6 1.3 45 7-51 4-51 (73) 168 d1l0oc_ a.4.13.2 (C:) SigmaF { 31.9 12 0.00077 13.7 4.8 38 7-45 12-49 (57) 169 d1bw5a_ a.4.1.1 (A:) Insulin g 31.8 12 0.00077 13.7 3.5 40 13-52 15-55 (66) 170 d1ftta_ a.4.1.1 (A:) Thyroid t 31.6 11 0.0007 14.0 1.6 40 14-53 15-55 (68) 171 d2p7vb1 a.4.13.2 (B:546-613) S 31.3 12 0.00078 13.6 2.3 24 22-45 20-43 (68) 172 d2cuea1 a.4.1.1 (A:7-74) Paire 31.2 11 0.00069 14.0 1.5 41 14-54 14-55 (68) 173 d2e1oa1 a.4.1.1 (A:8-64) Homeo 30.9 11 0.00071 14.0 1.5 39 15-53 14-53 (57) 174 d2ieca1 d.316.1.1 (A:11-123) H 30.7 5 0.00032 16.6 -0.2 19 32-50 6-24 (113) 175 d1aisb2 a.74.1.2 (B:1206-1300) 30.6 13 0.0008 13.5 3.9 22 28-49 61-82 (95) 176 d1ku2a1 a.4.13.1 (A:273-332) S 30.3 13 0.00081 13.5 4.2 33 7-40 9-41 (60) 177 d2craa1 a.4.1.1 (A:7-64) Homeo 30.1 12 0.00074 13.8 1.5 38 15-52 15-53 (58) 178 d1b72a_ a.4.1.1 (A:) Homeobox 30.1 12 0.00076 13.7 1.6 41 13-53 39-80 (88) 179 d1p7ia_ a.4.1.1 (A:) Engrailed 28.6 13 0.00084 13.4 1.6 39 14-52 12-51 (53) 180 d1fjla_ a.4.1.1 (A:) Paired pr 28.0 14 0.00088 13.2 3.5 41 13-53 14-55 (65) 181 d1hw1a1 a.4.5.6 (A:5-78) Fatty 27.8 14 0.00089 13.2 2.1 34 14-47 10-47 (74) 182 d1wi3a_ a.4.1.1 (A:) DNA-bindi 27.5 14 0.0009 13.2 3.3 40 11-53 20-61 (71) 183 d1vola2 a.74.1.2 (A:208-316) T 27.4 14 0.0009 13.2 4.2 22 27-48 61-82 (109) 184 d1zq3p1 a.4.1.1 (P:2-68) Homeo 27.4 14 0.0009 13.2 1.6 41 13-53 13-54 (67) 185 d1s7ea1 a.4.1.1 (A:103-152) He 27.3 6.1 0.00039 16.0 -0.3 34 18-51 15-49 (50) 186 d1rr7a_ a.4.1.14 (A:) Middle o 27.1 14 0.00091 13.1 2.3 50 10-59 7-56 (94) 187 d2hqva1 e.62.1.2 (A:11-186) Hy 27.0 7.4 0.00048 15.3 0.1 49 1-51 4-52 (176) 188 d1jgga_ a.4.1.1 (A:) Even-skip 25.4 15 0.00097 12.9 3.5 39 15-53 13-52 (57) 189 d2i52a1 d.316.1.1 (A:1-120) Hy 25.4 12 0.00076 13.7 0.9 36 23-58 7-49 (120) 190 d2gmga1 a.4.5.82 (A:1-105) Hyp 25.2 12 0.00077 13.7 0.9 35 6-47 10-48 (105) 191 d2oa4a1 a.4.12.3 (A:1-93) Unch 24.4 6.5 0.00042 15.8 -0.6 31 17-47 40-70 (93) 192 d2g3ba2 a.121.1.1 (A:74-189) P 23.9 16 0.001 12.7 12.0 105 79-184 2-113 (116) 193 d2i52a1 d.316.1.1 (A:1-120) Hy 23.9 12 0.00075 13.8 0.6 36 23-59 7-50 (120) 194 d1ttya_ a.4.13.2 (A:) Sigma70 23.4 16 0.0011 12.6 2.4 26 20-45 31-56 (87) 195 d1yz8p1 a.4.1.1 (P:1-60) Pitui 23.1 11 0.00074 13.8 0.5 40 14-53 14-54 (60) 196 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 23.0 17 0.0011 12.6 4.0 41 13-53 13-57 (73) 197 d2itba1 a.25.1.7 (A:3-201) Put 22.8 17 0.0011 12.5 2.9 34 35-69 38-71 (199) 198 d1lnwa_ a.4.5.28 (A:) MexR rep 22.3 17 0.0011 12.5 3.0 23 25-47 48-70 (141) 199 d2fbha1 a.4.5.28 (A:8-144) Tra 22.3 17 0.0011 12.5 3.4 20 27-46 43-62 (137) 200 d1ixca1 a.4.5.37 (A:1-89) LysR 22.2 17 0.0011 12.5 1.9 27 29-55 17-43 (89) 201 d1okra_ a.4.5.39 (A:) Methicil 21.6 18 0.0011 12.4 2.9 28 16-45 12-43 (120) 202 d1nnva_ d.17.7.1 (A:) Hypothet 21.2 18 0.0012 12.3 2.4 34 1-34 1-35 (107) 203 d1lfba_ a.4.1.1 (A:) Hepatocyt 21.1 18 0.0012 12.3 1.1 14 38-51 56-69 (78) 204 d1d5ya2 a.4.1.8 (A:57-121) Rob 21.0 18 0.0012 12.3 3.8 37 13-52 3-40 (65) 205 d1zs3a1 a.25.1.1 (A:3-173) Dod 20.6 18 0.0012 12.2 10.7 24 38-61 12-35 (171) 206 d1ufma_ a.4.5.47 (A:) COP9 sig 20.4 19 0.0012 12.2 3.7 34 9-43 13-46 (84) 207 d1mzba_ a.4.5.42 (A:) Ferric u 20.2 19 0.0012 12.2 3.3 43 4-48 13-58 (134) No 1 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=99.50 E-value=6e-14 Score=125.55 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=67.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9717899999999999998648412149999998488777876315898899999999999999988754320 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGF 75 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~ 75 (213) +|++++|++|+++|.++|.++||+++||++||+++|||+++|||||+||++|+.+++.+..+.+...+..... T Consensus 2 vd~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 74 (77) T d2gfna1 2 VDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILD 74 (77) T ss_dssp CCCCHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8989999999999999999859040579999998788877998888399999999999999999999999983 No 2 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=99.47 E-value=8.9e-14 Score=124.24 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=68.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9997178999999999999986484121499999984887778763158988999999999999999887543 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) |+.++.++|++|+++|.++|.++||+++|+++||+++|||+++||+||+||++|+.+++++....+...+... T Consensus 1 Ms~~~~~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~l~~~ 73 (76) T d2fd5a1 1 MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGEL 73 (76) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9711899999999999999998491305699999983899550042089999999999999999999998767 No 3 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=99.47 E-value=1.4e-13 Score=122.79 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=67.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999999998875432 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG 74 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~ 74 (213) |-.+..++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++...+.+........ T Consensus 1 mR~~a~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~ 74 (78) T d2o7ta1 1 MRADALKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQLQAI 74 (78) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98868999999999999999984914067999998839988799998869999999999999999999999987 No 4 >d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]} Probab=99.45 E-value=1.3e-13 Score=123.00 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=64.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9997178999999999999986484121499999984887778763158988999999999999999887543 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) ++.+.+++|++|+++|.++|.++||++ |+++||+++||++++|||||+||++|+.+++++..+.+...+... T Consensus 6 ~~~r~~~tr~~Il~aa~~l~~~~G~~~-t~~~Ia~~agvs~~~~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~ 77 (88) T d1t33a1 6 TTTKGEQAKSQLIAAALAQFGEYGLHA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPH 77 (88) T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 865099999999999999998754016-799999883998443100198999999999999999999999877 No 5 >d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=99.44 E-value=2.9e-13 Score=120.18 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=63.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999999999986484121499999984887778763158988999999999999999887543 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++.++.+++...+... T Consensus 2 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 69 (73) T d1t56a1 2 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTL 69 (73) T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999997591507799999986988889988884999999999999999999999998 No 6 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=99.44 E-value=3.2e-13 Score=119.88 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=63.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 717899999999999998648412149999998488777876315898899999999999999988754 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAES 72 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~ 72 (213) |++.+|++|+++|.++|.++||+++||++||+++||++++|||||+||++|+.+++++..+.+...+.. T Consensus 1 np~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~ 69 (74) T d2g7sa1 1 NPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAE 69 (74) T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 978899999999999999859150679999998781841698888399999999999999999999999 No 7 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=99.43 E-value=2.8e-13 Score=120.31 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=60.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 971789999999999999864841214999999848877787631589889999999999999998 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLK 68 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~ 68 (213) ++.+++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++...+.... T Consensus 1 lr~~~~r~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~~~~~~~~~ 66 (71) T d1ui5a1 1 LRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRR 66 (71) T ss_dssp CCTTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 977999999999999999985946267999999879487699989829999999999999999999 No 8 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=99.43 E-value=3.1e-13 Score=119.98 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=64.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1789999999999999864841214999999848877787631589889999999999999998875432 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG 74 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~ 74 (213) +.++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++.....+...+.... T Consensus 2 ~~~tre~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l~~~~~~~~~~~~~~~~~~~~ 71 (79) T d2fbqa1 2 QSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKEL 71 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3489999999999999986935040999999988285578787769999999779999999999999997 No 9 >d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.42 E-value=3.3e-13 Score=119.74 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=64.9 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7178999999999999986484121499999984887778763158988999999999999999887543 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +.+++|++|+++|.++|.++||+++||++||+++||++++||+||+||++|+.++++...+.+...+... T Consensus 2 r~e~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~~~~~~~~~~ 71 (75) T d3c07a1 2 KSEQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVREV 71 (75) T ss_dssp HHHHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTTH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5699999999999999997491407799999987939879998985999999999999999999999998 No 10 >d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.42 E-value=5.6e-13 Score=118.00 Aligned_cols=72 Identities=28% Similarity=0.283 Sum_probs=66.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 971789999999999999864841214999999848877787631589889999999999999998875432 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG 74 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~ 74 (213) .++.++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++.+..+.+...+.... T Consensus 5 ~~~~~~r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~k~~L~~~~~~~~~~~~~~~~~~a~ 76 (79) T d2oi8a1 5 RYRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLRAAA 76 (79) T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 308999999999999999986903067999999867997744551699999999999999999999999988 No 11 >d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]} Probab=99.41 E-value=4.2e-13 Score=119.00 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=64.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1789999999999999864841214999999848877787631589889999999999999998875432 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG 74 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~ 74 (213) ++++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++.+.+.+...+.... T Consensus 2 r~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~~ 71 (74) T d1v7ba1 2 RTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDIT 71 (74) T ss_dssp CSCHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6899999999999999985956357999998849692238550799999999999999999999998874 No 12 >d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.41 E-value=7.8e-13 Score=116.85 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=64.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7178999999999999986484121499999984887778763158988999999999999999887543 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +..+||++|++++.++|.++||+++|+++||+++|||+++||+||+||++|+.+++++..+.+...+..+ T Consensus 2 ~~~~tr~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~v~~~ 71 (75) T d2hyja1 2 EAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEP 71 (75) T ss_dssp THHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTGG T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7799999999999999997590307699999988909899988882999999999999999999998888 No 13 >d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=99.39 E-value=6.4e-13 Score=117.53 Aligned_cols=66 Identities=26% Similarity=0.257 Sum_probs=59.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999986484121499999984887778763158988999999999999999887543 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +||++|+++|.++|.++|| ++||++||+++|||+++||+||+||++|+.+++.+...++...+... T Consensus 1 ~tr~~Il~aA~~l~~~~G~-~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 66 (70) T d2hkua1 1 QTRDALFTAATELFLEHGE-GVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDD 66 (70) T ss_dssp CHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9699999999999876135-74499999887888536873089999999999999999999999997 No 14 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=99.39 E-value=9e-13 Score=116.36 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=64.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7178999999999999986484121499999984887778763158988999999999999999887543 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +++++|++|+++|.++|.++||+++||++||+++||++++||+||+||++|+.+++++....+...+... T Consensus 8 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~ 77 (81) T d1rkta1 8 HKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKS 77 (81) T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999999999999998592517799999986949889988884999999999999999999999998 No 15 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=99.38 E-value=1.1e-12 Score=115.74 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=61.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999986484121499999984887778763158988999999999999999887543 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) ++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++....+...+... T Consensus 1 Pr~~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 67 (72) T d1vi0a1 1 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEED 67 (72) T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9899999999999998590415599999987949879988883999999999999999999999999 No 16 >d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.37 E-value=5.1e-13 Score=118.32 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=60.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999999999986484121499999984887778763158988999999999999999887 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEA 70 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~ 70 (213) |+||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+ T Consensus 1 E~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l~~~~~~~~~~~~~~~v 65 (68) T d2d6ya1 1 EATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKMLDLAISV 65 (68) T ss_dssp CCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 98999999999999998592506799999887846628988874999999999999999998608 No 17 >d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=99.37 E-value=1.1e-12 Score=115.67 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=61.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7899999999999998648412149999998488777876315898899999999999999988754 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAES 72 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~ 72 (213) .++|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++...+.+...+.. T Consensus 3 ~~rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~~K~~l~~~~~~~~~~~~~~~l~a 69 (72) T d1pb6a1 3 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKA 69 (72) T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7899999999999999859250679999998697867999888699999999999999999999988 No 18 >d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=99.36 E-value=7.8e-13 Score=116.85 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=61.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 789999999999999864841214999999848877787631589889999999999999998875 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAE 71 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~ 71 (213) .+||++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++...+++..... T Consensus 1 aerr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F~~K~~L~~~~~~~~~~~~~~~~~ 66 (72) T d2g3ba1 1 SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRS 66 (72) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 989999999999999983924077999998859697799988839999999999999999999988 No 19 >d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]} Probab=99.36 E-value=1.3e-12 Score=115.15 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=61.9 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999864841214999999848877787631589889999999999999998875432 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG 74 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~ 74 (213) +|++|+++|.++|.++||+++||++||+++||++++||+||+||++|+.+++++..+.+...+.... T Consensus 1 rR~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~l~~~~ 67 (70) T d2gena1 1 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGF 67 (70) T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999985924087999999879587799989879999999999999999999999987 No 20 >d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]} Probab=99.34 E-value=1.1e-12 Score=115.58 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=55.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 1789999999999999864841214999999848877787631589889999999999 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRA 62 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~ 62 (213) ++++|++|+++|.++|.++||+++||++||+++||++++||+||+||++|+.+++++. T Consensus 2 re~tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~ 59 (73) T d2fx0a1 2 REQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKY 59 (73) T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH T ss_conf 2889999999999999986935176999999878486499988849999999999997 No 21 >d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=99.34 E-value=2.3e-12 Score=113.22 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=61.7 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999986484121499999984887778763158988999999999999999887543 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +|++|++++.++|.++||+++||++||+++||++++||+||+||++|+.++++...+.+...+.+. T Consensus 2 t~e~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 67 (69) T d2np5a1 2 SPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSEV 67 (69) T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 499999999999998491406799999883988879988883999999999999999999999875 No 22 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=99.34 E-value=1.6e-12 Score=114.40 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=61.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999998648412149999998488777876315898899999999999999988754 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAES 72 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~ 72 (213) .+|++|+++|.++|.++||+++|+++||+++|||+++||+||+||++|+.+++++..+.+...+.. T Consensus 1 d~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~ 66 (71) T d1jt6a1 1 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKK 66 (71) T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999859140679999998785875998888499999999999999999999999 No 23 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=99.34 E-value=2.1e-12 Score=113.56 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=61.4 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999986484121499999984887778763158988999999999999999887543 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) +|++|+++|.++|.++||+++|+++||+++|||+++||+||+||++|+.+++.+..+.+...+... T Consensus 4 t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~~~~~~~~~l~~a 69 (72) T d1zk8a1 4 TLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEA 69 (72) T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 399999999999998697756699999995979999989883999999999999999999999988 No 24 >d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]} Probab=99.33 E-value=2e-12 Score=113.67 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=62.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999864841214999999848877787631589-88999999999999999887543 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE-KDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s-Ke~L~~a~~~~~~~~~~~~~~~~ 73 (213) ++|++|+++|.++|.++||+++||++||+++|||+++||+||+| |++|+.++++...+.+...+... T Consensus 2 etr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~~~Ke~L~~~~~~~~~~~~~~~~~~~ 69 (73) T d1sgma1 2 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQS 69 (73) T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 29999999999999984924177999999868887799998599899999999999999999999997 No 25 >d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]} Probab=99.32 E-value=5.4e-13 Score=118.11 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=58.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999986484121499999984887778763158988999999999999999887543 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESA 73 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 73 (213) |++||++|.++|.++||+++||++||+++|||+|+||+||+||++|+.++++++.+.+...+... T Consensus 2 re~iL~aA~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~a 66 (69) T d2i10a1 2 DQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEA 66 (69) T ss_dssp CHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHCSCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998790627799999986878629988885999999999999999999999998 No 26 >d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]} Probab=99.32 E-value=1.8e-12 Score=114.09 Aligned_cols=68 Identities=28% Similarity=0.359 Sum_probs=62.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999864841214999999848877787631589889999999999999998875432 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAG 74 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~ 74 (213) ++|++|++++.++|.++||+++|+++||+++|||+++||+||+||++|+.+++.+..+.+...+.... T Consensus 3 ~rR~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~~~~~~~~~~~~~~~l 70 (75) T d2id6a1 3 SKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFL 70 (75) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999983935167999998849988899888879999999999999999999999999 No 27 >d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=99.31 E-value=3.9e-12 Score=111.39 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=60.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 971789999999999999864841214999999848877787631589889999999999999998 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLK 68 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~ 68 (213) +++..||++|++++.++|.++||+++||++||+++||++++||+||+||++|+.+++++...++.. T Consensus 2 ~r~~~t~~~I~~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F~~k~~l~~~~~~~~~~~~~~ 67 (71) T d2iu5a1 2 EKSIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFENDFAELIN 67 (71) T ss_dssp CTTSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 851999999999999999984964077999998757164589777679999999999999999998 No 28 >d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.31 E-value=2.9e-12 Score=112.42 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=58.9 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 717899999999999998648412149999998488777876315898899999999999999 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRM 66 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~ 66 (213) +..++|++|++++.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..++. T Consensus 3 R~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L~~~~~~~~~~~~ 65 (68) T d2id3a1 3 RTARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQS 65 (68) T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 839999999999999999849340779999999786887999998599999999999999975 No 29 >d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]} Probab=99.30 E-value=3.6e-12 Score=111.62 Aligned_cols=62 Identities=26% Similarity=0.293 Sum_probs=57.4 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 71789999999999999864841214999999848877787631589889999999999999 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSR 65 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~ 65 (213) +..++|++|++++.++|.++||+++||++||+++||++++||+||+||++|+.+++.+..++ T Consensus 1 R~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~~ 62 (69) T d2fq4a1 1 RNIETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSAAAA 62 (69) T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHSCC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 96999999999999999983924077999999978588799999879999999999999883 No 30 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=99.28 E-value=2.8e-12 Score=112.54 Aligned_cols=60 Identities=22% Similarity=0.416 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999999999986-484121499999984887778763158988999999999999999 Q T0596 8 MRDAIVDTAVELAAH-TSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRML 67 (213) Q Consensus 8 ~R~~Il~AA~~l~~e-~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~ 67 (213) +|++|+++|.++|.+ +||+++||++||+++|||+++||+||+||++|+.+++++..+++. T Consensus 3 tr~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~~ 63 (68) T d1z0xa1 3 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQ 63 (68) T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCC T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCC T ss_conf 8999999999999876792316799999987726568999629999999999999996545 No 31 >d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]} Probab=99.24 E-value=5.9e-12 Score=110.00 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=55.2 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999998648412149999998488777876315898899999999999999 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRM 66 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~ 66 (213) |++|+++|.++|.++||+++|+++||+++||++++||+||+||++|+.+++++..+++ T Consensus 1 R~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~K~~L~~~~~~~~~~~~ 58 (62) T d2vkva1 1 KSKVINSALELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAVEILARH 58 (62) T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCCHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 9998999999999839351789999988098888999888799999999999999998 No 32 >d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.21 E-value=3.9e-12 Score=111.38 Aligned_cols=61 Identities=28% Similarity=0.272 Sum_probs=56.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 1789999999999999864841214999999848877787631589889999999999999 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSR 65 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~ 65 (213) +..+|++|+++|.++|.++||+++|+++||+++||++++|||||+||++|+.+++++...+ T Consensus 2 p~~tr~~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~~~~~~~~~ 62 (68) T d2g7la1 2 PALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDALLGE 62 (68) T ss_dssp CCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHHTTS T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 8035999999999999984903078999999978287676287759999999999999977 No 33 >d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=99.15 E-value=1.4e-11 Score=106.96 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=53.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999999998648412149999998488777876315898899999999999999 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRM 66 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~ 66 (213) +|++|+++|.++|.++| ++||++||+++||++++|||||+||++|+.++++++..++ T Consensus 2 ~R~~Il~aa~~l~~~~G--~~ti~~Ia~~agvs~~~iY~~F~~K~~L~~~v~~~~~~~~ 58 (65) T d2g7ga1 2 DRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREI 58 (65) T ss_dssp CHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 89999999999997867--9789999988570613131158999999999999999998 No 34 >d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]} Probab=99.10 E-value=1.2e-11 Score=107.54 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=51.7 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999864841214999999848877787631589889999999999999998875 Q T0596 12 IVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAE 71 (213) Q Consensus 12 Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~~~ 71 (213) ||++|.++|.++||+++||++||+++|||+++|||||+||++|+.++++...+ +...+. T Consensus 1 Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~a~~~~~~~-~~e~~~ 59 (65) T d2np3a1 1 ILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQALELPGK-IEEAIT 59 (65) T ss_dssp CHHHHHHHC---------------------------CCC-CHHHHHHHCHHHH-HHHHHH T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 99999999998790407799999987868879998887999999999998740-999999 No 35 >d3c07a2 a.121.1.1 (A:90-235) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=97.54 E-value=0.004 Score=40.86 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=86.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 5788999999999999875189999999987446785-----88999999999999999997067877877789999999 Q T0596 79 VASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHI-----HIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLT 153 (213) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (213) +.++++..++..+++.+..++.+....+.....+..+ ......+....+.+....+................+.+ T Consensus 2 Dl~~RL~~~l~t~Ldvl~pyr~F~~~~l~~a~~P~~plspfs~es~~aR~~a~~l~~e~i~~~~~~~~~~l~~~lp~l~W 81 (146) T d3c07a2 2 DLEARLAGVLKVWLDIATPYHEFAVQFFKNAADPDSPLSPFSPESEHARVEAIGIHRAVLAGAKTKVPEELRDILPELMW 81 (146) T ss_dssp SHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHTCTTSTTSTTSGGGHHHHHHHHHHHHHHHHTSSSCCCGGGTTHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 68999999999999983341899999998606988888888823489999999999999833787777678988889999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999987359997758999999999999998877 Q T0596 154 TIYLMTFFFWMRDESENSRHTRQFLKRHLTMAAWLGQ 190 (213) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~ 190 (213) ..+++++.+|+.|.+++.+.|+.++++.+.....+-. T Consensus 82 ~~~l~il~fW~~D~S~~~ekT~~lieksv~l~~~lI~ 118 (146) T d3c07a2 82 LSQMGLVLYWIFDRTEGRERSYRLAERGARLTARGVV 118 (146) T ss_dssp HHHHHHHHHHHHCCSTTSHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999648980067899999988889998998 No 36 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Probab=95.75 E-value=0.0049 Score=40.17 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=28.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999999998648412149999998488777876315898 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ++.+.+++. .| .|+.+||+..|||++|||+||+.. T Consensus 11 ~~~a~~l~~-~G---~s~~~iA~~~gVSr~TiYry~pa~ 45 (47) T d1ijwc_ 11 QEQISRLLE-KG---HPRQQLAIIFGIGVSTLYRYFPAS 45 (47) T ss_dssp HHHHHHHHH-TT---CCHHHHHHHHTCCHHHHHHHSCST T ss_pred HHHHHHHHH-CC---CCHHHHHHHHCCCHHHHHHHCCCC T ss_conf 999999998-89---979999999796999998557755 No 37 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=92.73 E-value=0.088 Score=30.39 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=38.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CHHHHHHHCCC Q ss_conf 7899999999999998648412149999998488-77787631589 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAV-SLDEIRLYFRE 50 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGv-s~~t~y~yF~s 50 (213) +++.+.|++.-.+.+.++||.- |+++||+..|+ |++++++|... T Consensus 4 T~rQ~~vL~~I~~~~~~~G~~P-s~rei~~~~g~~S~stv~~~l~~ 48 (71) T d1jhfa1 4 TARQQEVFDLIRDHISQTGMPP-TRAEIAQRLGFRSPNAAEEHLKA 48 (71) T ss_dssp CHHHHHHHHHHHHHHHHHSSCC-CHHHHHHHTTCSSHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHCCCCCHHHHHHHHHH T ss_conf 9999999999999999828898-89999977299999999999999 No 38 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=92.37 E-value=0.037 Score=33.30 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 21499999984887778763158988999999999999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~ 64 (213) .+|+.|||+.+|||++|+-+.+.++..+-.+.-+++.+ T Consensus 1 NvTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~~ 38 (57) T d2hsga1 1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLE 38 (57) T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 96999999898959999999968988679899999999 No 39 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1biba1 d2ewna1 d1hxda1 Probab=91.68 E-value=0.075 Score=30.93 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=34.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 97178999999999999986484121499999984887778763158988 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++..+++.+||+ ++.++++ +|..+||++.|||+.|+++|...-+ T Consensus 1 Mk~~~~~~~IL~----~L~~~~~--~s~~eLa~~l~vS~~Tv~r~i~~L~ 44 (63) T d1biaa1 1 MKDNTVPLKLIA----LLANGEF--HSGEQLGETLGMSRAAINKHIQTLR 44 (63) T ss_dssp CCCCHHHHHHHH----HHTTSSC--BCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHH----HHHCCCC--CCHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 970068899999----9982898--3778999870999835789999998 No 40 >d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=91.05 E-value=0.042 Score=32.89 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=28.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 149999998488777876315898899999999999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRAD 63 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~ 63 (213) .|+.|||+.+|||++|+-+.|.++..+-.+.-+++. T Consensus 1 ATi~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV~ 36 (57) T d1qpza1 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVW 36 (57) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 989999999895999999997799856899999999 No 41 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=90.83 E-value=0.04 Score=33.06 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 21499999984887778763158988999999999999 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~ 64 (213) .+|+.|||+.+|||++|+-++|.++..+-.+.-+++.+ T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI~~ 39 (59) T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEA 39 (59) T ss_dssp CCCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 88899999897979999999977998679999999999 No 42 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=89.17 E-value=0.14 Score=28.76 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 99999999998648412149999998488777876315898 Q T0596 11 AIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 11 ~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ..++.+++.+.++=-+..|+.+||+.+|+|+..|++.|+.. T Consensus 3 ~~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~ 43 (54) T d1bl0a1 3 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 43 (54) T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999998654799999999999893999999999999 No 43 >d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]} Probab=88.91 E-value=0.57 Score=24.03 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=39.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC-CCHH Q ss_conf 9717899999999999998648412149999998488777876315-8988 Q T0596 3 INNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF-REKD 52 (213) Q Consensus 3 ~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF-~sKe 52 (213) .+-.+++...+=+--++..+.|-+.-|-.+||.+.|||+.++|++= .+|. T Consensus 12 L~~~q~~AA~~l~~Ne~~~~~~~ekktqeqiAeelGisr~tLyrWrt~dk~ 62 (120) T d2ao9a1 12 LTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQD 62 (120) T ss_dssp SCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHH T ss_pred HHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHH T ss_conf 659999999998603001100033414999999958018889887606626 No 44 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=88.88 E-value=0.18 Score=27.93 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=31.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 71789999999999999864841214999999848877787631589 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +.++++.+|+. ++.++++ +|..++|++.|||+.|+|+|... T Consensus 2 k~~~~~~~iL~----~L~~~~~--~s~~eLa~~l~vS~~ti~r~i~~ 42 (63) T d1biaa1 2 KDNTVPLKLIA----LLANGEF--HSGEQLGETLGMSRAAINKHIQT 42 (63) T ss_dssp CCCHHHHHHHH----HHTTSSC--BCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCHHHHHHHH----HHHHCCC--CCHHHHHHHHCCCHHHHHHHHHH T ss_conf 86479999999----9997895--87999999989399999999999 No 45 >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=88.88 E-value=0.21 Score=27.37 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHHHHCCCHHH Q ss_conf 7899999999999998648412149999998488--77787631589889 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAV--SLDEIRLYFREKDE 53 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGv--s~~t~y~yF~sKe~ 53 (213) ++|++.|+++-++.+.+.|+ .++.++|++..|+ |.+|+.+|+..-++ T Consensus 3 t~Rq~~IL~~Ive~y~~~g~-Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~ 51 (87) T d1stza1 3 NDRQRKVLYCIVREYIENKK-PVSSQRVLEVSNIEFSSATIRNDMKKLEY 51 (87) T ss_dssp CHHHHHHHHHHHHHHHHHCS-CBCHHHHHHHSCCCSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 98999999999999998098-46799999870889898999999999998 No 46 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=88.59 E-value=0.12 Score=29.27 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=38.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999999999998648412149999998488777876315898 Q T0596 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ..|++.+.+.+.++=-+.+|+.+||+.+|+|+..|.+.|+.. T Consensus 2 ~~ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~~ 43 (54) T d1d5ya1 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (54) T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 799999999998744899999999999892999999999999 No 47 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=88.10 E-value=0.22 Score=27.26 Aligned_cols=45 Identities=22% Similarity=0.130 Sum_probs=34.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 99971789999999999999864841214999999848877787631589 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) |...+++|+.+|+.. +.+.. ..+|..++|+..|||+.|++++... T Consensus 1 M~~~k~eR~~~Il~~----L~~~~-~~vs~~~La~~l~VS~~TI~rdi~~ 45 (65) T d1j5ya1 1 MKTVRQERLKSIVRI----LERSK-EPVSGAQLAEELSVSRQVIVQDIAY 45 (65) T ss_dssp CHHHHHHHHHHHHHH----HHHCS-SCBCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHH----HHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 960099999999999----99859-9785999999979899999999999 No 48 >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} Probab=87.50 E-value=0.33 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 178999999999999986484121499999984887778763158988 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+++|.+|+.. +.+ | ..|+.+||+..|+|++++++|-..-+ T Consensus 13 ~~~~R~~Il~~----L~~-~--~~~~~ela~~l~~s~~~v~~HL~~L~ 53 (194) T d2p4wa1 13 GNETRRRILFL----LTK-R--PYFVSELSRELGVGQKAVLEHLRILE 53 (194) T ss_dssp HSHHHHHHHHH----HHH-S--CEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCHHHHHHHHH----HHH-C--CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999----980-8--98799999998909989999999999 No 49 >d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=87.13 E-value=0.074 Score=30.97 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.0 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 14999999848877787631589889 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +|+.|||+.+|||++|+.+.+.++.+ T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~ 26 (59) T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAK 26 (59) T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGG T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 97999999979699999999849987 No 50 >d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]} Probab=86.38 E-value=0.6 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=35.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 71789999999999999864841-21499999984887778763158 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWE-AVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~-~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +..+.|-.+|.+...| .+.|.. ...+..+|.+.|||++|+|++|. T Consensus 30 ~~Ak~RL~~l~~V~~L-~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~ 75 (99) T d2ezla_ 30 RLAEKWLPAVQAADEM-LNQGISTKTAFATVAGHYQVSASTLRDKYY 75 (99) T ss_dssp HHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHSSSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999999999-986970899999999995988999999999 No 51 >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} Probab=85.91 E-value=0.31 Score=26.14 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++|-+|+. ++. +| ..|+.+||+..|++++++|+|-..- T Consensus 18 ~p~R~~Il~----~L~-~~--~~s~~ela~~lg~s~~~v~~hl~~L 56 (190) T d1ulya_ 18 EDTRRKILK----LLR-NK--EMTISQLSEILGKTPQTIYHHIEKL 56 (190) T ss_dssp SHHHHHHHH----HHT-TC--CBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHH----HHH-HC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999999----998-19--9879999999891999999999999 No 52 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=84.94 E-value=0.42 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=26.8 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 99998648412149999998488777876315898 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ++.|.+.+ ..+|+.+||++.|++++++|++-.+- T Consensus 11 L~~~a~~~-~~~s~~eia~~~~~~~st~~rll~tL 44 (75) T d1mkma1 11 LDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVVL 44 (75) T ss_dssp HHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99998579-99899999999791999999999999 No 53 >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=84.69 E-value=0.76 Score=23.05 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 89999999999999864841214999999848877787631589 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +.|+.=...-+.++.++| .+|..+||+..|+|++|+.++... T Consensus 2 ~ir~~N~~~Il~~l~~~g--~~sr~eLa~~~glS~~Tv~~~l~~ 43 (71) T d1z05a1 2 HIKQINAGRVYKLIDQKG--PISRIDLSKESELAPASITKITRE 43 (71) T ss_dssp HHHHHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 778999999999999859--948999999988788789999999 No 54 >d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Probab=83.65 E-value=1.3 Score=21.33 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=36.6 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 717899999999999998648412149999998488777876315898899 Q T0596 4 NNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +.-+.++.|-+.-..+-.++|+ |..++|+.+||+++++.+|-.++... T Consensus 3 ~~~~~~~~~g~~ik~~R~~~gl---tq~~lA~~~gis~~~i~~~e~g~~~p 50 (77) T d2b5aa1 3 NEIEIKRKFGRTLKKIRTQKGV---SQEELADLAGLHRTYISEVERGDRNI 50 (77) T ss_dssp CHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCSCC T ss_pred CHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 6389999999999999998099---99999989797999999998699899 No 55 >d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} Probab=83.45 E-value=1 Score=22.10 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=36.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH-HHH Q ss_conf 99999999999998648412149999998488777876315898-899 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK-DEL 54 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK-e~L 54 (213) .|..|...-.++..++|+ |..++|+.+||+++.++.+..+| ... T Consensus 3 ~~~~l~~~i~~~r~~~gl---tq~elA~~~gv~~~~is~ie~g~~~~~ 47 (69) T d2a6ca1 3 MRSQLLIVLQEHLRNSGL---TQFKAAELLGVTQPRVSDLMRGKIDLF 47 (69) T ss_dssp HHHHHHHHHHHHHHTTTC---CHHHHHHHHTSCHHHHHHHHTTCGGGC T ss_pred HHHHHHHHHHHHHHHCCC---CHHHHHHHHHCCHHHHHHHHCCCCCCH T ss_conf 799999999999999699---999999998747847999976652010 No 56 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=83.13 E-value=0.99 Score=22.17 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=38.2 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 999999999999986484121499999984887778763158988999999999999 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~ 64 (213) -++.|-+--..+-.++|+ |..++|+.+||+++++++|..++...=...+..... T Consensus 5 ~~~~ig~~lr~~R~~~g~---sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~ 58 (79) T d1y9qa1 5 FKSQIANQLKNLRKSRGL---SLDATAQLTGVSKAMLGQIERGESSPTIATLWKIAS 58 (79) T ss_dssp HHHHHHHHHHHHHHHTTC---CHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 999999999999998299---999999987711648999986998999999999999 No 57 >d1xs9a_ i.11.1.1 (A:) Ternary complex formed between MarA, the alpha-CTD of RNA polymerase and DNA {Escherichia coli [TaxId: 562]} Probab=82.86 E-value=0.074 Score=30.98 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=46.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999717899999999999998648412149999998488777876315898899 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) |++.+..+.+..++.+.+.+.++=-...++.+||+.+|+|+.+|.+.|...-.+ T Consensus 1 l~~~~~~~~~~~i~~v~~~i~~~~~~~~~l~~la~~~~~s~~~l~r~Fk~~~g~ 54 (129) T d1xs9a_ 1 MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGH 54 (129) T ss_dssp CCCCSCCHHHHTTTTTHHHHHTTSSSSCCCTTTGGGGSSCHHHHHHHHHTTTSS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 987668863689999999998600589998899988689999999999998566 No 58 >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Probab=82.86 E-value=0.5 Score=24.50 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++|-+|+..- .+ | ..|+.+|++..|++++++.+|..-- T Consensus 22 ~p~Rl~Il~~L----~~-~--~~~v~ela~~l~is~stvS~HL~~L 60 (98) T d1r1ta_ 22 DPNRLRLLSLL----AR-S--ELCVGDLAQAIGVSESAVSHQLRSL 60 (98) T ss_dssp CHHHHHHHHHH----TT-C--CBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999----81-9--9679999999892988999999999 No 59 >d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=82.24 E-value=1.2 Score=21.58 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=39.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH-HHHH Q ss_conf 7899999999999998648412149999998488777876315898-8999 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK-DELI 55 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK-e~L~ 55 (213) .+.|..|...-.++..++|+ |..++|+.+|+++++++++-.+| ..+= T Consensus 6 ~~~k~~l~~~i~~~r~~~gl---tq~~lA~~~gis~~~is~ie~G~~~~~~ 53 (89) T d2o38a1 6 RQTKLRLAYALNAVIDRARL---SQAAAAARLGINQPKVSALRNYKLEGFS 53 (89) T ss_dssp HHHHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCCTTCC T ss_pred HHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999999999599---9999999997337089999849978986 No 60 >d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]} Probab=81.40 E-value=1.6 Score=20.43 Aligned_cols=100 Identities=11% Similarity=-0.020 Sum_probs=59.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHH Q ss_conf 5788999999999999875189999999987---446785889999999999999999970---6787787778999999 Q T0596 79 VASERIHHLIMIWLDALAVQRKVTRQMIMSK---LEFGHIHIQIPAVMRVSRTVQWVREAA---QRDATFMRRALEESTL 152 (213) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 152 (213) +++++++.++..++++...+|..+..++..- ..+..............+.+..++..+ |.-. +.+......++ T Consensus 2 s~~e~lr~~v~~~~~~v~~~p~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~g~~~G~~r-~~~~~~~~~~i 80 (118) T d2gena2 2 SAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR-EMPDDCFASVV 80 (118) T ss_dssp SHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBC-CCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHH T ss_conf 99999999999999999909599899999760023730789999999999999999999998857888-66799999999 Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHH Q ss_conf 99999999987359997-7589999999 Q T0596 153 TTIYLMTFFFWMRDESE-NSRHTRQFLK 179 (213) Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 179 (213) .+.......+|+....+ +.....+.+- T Consensus 81 ~G~~~~~~~~wl~~~~~~~~e~~~e~l~ 108 (118) T d2gena2 81 IGPAHDLARQWLAGRTRVALADCRELLA 108 (118) T ss_dssp HHHHHHHHHHHHTTCCSSCGGGGHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 9999999999982799999999999999 No 61 >d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=81.38 E-value=0.65 Score=23.60 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 178999999999999986484121499999984887778763158 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) ..+.|++|+++. +.| .+.++||++.|||.+++|+... T Consensus 18 s~dlR~rIv~~~-----~~G---~s~r~iA~~~~VS~~tV~k~l~ 54 (123) T d1pdnc_ 18 PNNIRLKIVEMA-----ADG---IRPCVISRQLRVSHGCVSKILN 54 (123) T ss_dssp CHHHHHHHHHHH-----HTT---CCHHHHHHHHTCCHHHHHHHHH T ss_pred CHHHHHHHHHHH-----HHC---CCHHHHHHHHCCCHHHHHHHHH T ss_conf 899999999999-----804---8999999998969999999999 No 62 >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Probab=81.23 E-value=0.76 Score=23.05 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 7899999999999998648412149999998488777876315 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .+-|.++|+- ..+. .+.|+.+||+..||+.++||++- T Consensus 8 ~EfK~~aV~l----~~~~--~g~s~~~vA~~lGIs~~tl~~W~ 44 (89) T d2jn6a1 8 EEFKRDAVAL----YENS--DGASLQQIANDLGINRVTLKNWI 44 (89) T ss_dssp HHHHHHHHHH----HTTG--GGSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHH----HHHC--CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999----9982--99859999999798988999999 No 63 >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=81.20 E-value=1.1 Score=21.68 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 7899999999999998648412149999998488777876315 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++..+..|.+=..+-.++| .+++.+||+..||+++|+-.-. T Consensus 2 T~s~EdYLk~I~~l~~~~~--~v~~~~iA~~L~vs~~SVs~mi 42 (61) T d2ev0a1 2 TPSMEDYIEQIYMLIEEKG--YARVSDIAEALAVHPSSVTKMV 42 (61) T ss_dssp CHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCCHHHHHHH T ss_conf 8529999999999983589--7509999999589951599999 No 64 >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Probab=80.93 E-value=0.94 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 17899999999999998648412149999998488777876315898 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+++|-+|+.. +.+ | ..++.+|++..|++.+++.+|..-- T Consensus 16 ~d~~Rl~Il~~----L~~-~--~~~v~el~~~l~~s~~~vS~HL~~L 55 (94) T d1r1ua_ 16 GDYNRIRIMEL----LSV-S--EASVGHISHQLNLSQSNVSHQLKLL 55 (94) T ss_dssp CSHHHHHHHHH----HHH-C--CBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHH----HHC-C--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 89999999999----972-9--9569999999887877899999999 No 65 >d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=79.96 E-value=0.53 Score=24.28 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=22.8 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999986484121499999984887778763158 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +.-+.+.|+ +..+||++.|+++.++|+-.. T Consensus 11 V~~L~~~G~---gat~IAk~lgI~R~SVYR~L~ 40 (43) T d1gdta1 11 VLNMWQQGL---GASHISKTMNIARSTVYKVIN 40 (43) T ss_dssp HHHHHHTTC---CHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 999999489---899999997987999999986 No 66 >d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=79.29 E-value=1.9 Score=19.94 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=22.3 Q ss_pred CHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 7789999999-999999998735999775899999999999999 Q T0596 144 RRALEESTLT-TIYLMTFFFWMRDESENSRHTRQFLKRHLTMAA 186 (213) Q Consensus 144 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 186 (213) ........+. .+-+......+.....+.......+++.++... T Consensus 68 d~~~~A~~L~aliDGL~~~~l~~p~~~~~e~~~~~l~~~ld~~l 111 (118) T d2np5a2 68 EAETRAALLLATVDGLALDAIGSPALYPPEYLEHALDIQIGMIL 111 (118) T ss_dssp THHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 88999999999993179987328677999999999999999997 No 67 >d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=79.18 E-value=1.2 Score=21.62 Aligned_cols=36 Identities=36% Similarity=0.451 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 17899999999999998648412149999998488777876315 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +-+.|++|+++. +. +.|.++||++-+||++++.+.- T Consensus 16 s~DLR~Riv~~~-----~~---G~s~r~aA~rf~VS~s~v~k~l 51 (63) T d1k78a1 16 PDVVRQRIVELA-----HQ---GVRPCDISRQLRVSHGCVSKIL 51 (63) T ss_dssp CHHHHHHHHHHH-----HT---TCCHHHHHHHHTCCHHHHHHHH T ss_pred CHHHHHHHHHHH-----HC---CCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999-----95---9989999999597799999999 No 68 >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Probab=78.78 E-value=1.3 Score=21.20 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1789999999999999864841214999999848877787631589 Q T0596 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 5 ~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+++|-+|+..- ... +..|+.+|++..|++.+++.+|..- T Consensus 29 adp~Rl~Il~~L----~~~--~~~~v~ela~~l~~s~s~vS~HL~~ 68 (108) T d1u2wa1 29 ADENRAKITYAL----CQD--EELCVCDIANILGVTIANASHHLRT 68 (108) T ss_dssp HSHHHHHHHHHH----HHS--SCEEHHHHHHHHTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHH----HHC--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 899999999999----868--9914999998885572579999999 No 69 >d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1 {Aeropyrum pernix [TaxId: 56636]} Probab=78.67 E-value=1.5 Score=20.77 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 99999999998648412149999998488777876315898899999 Q T0596 11 AIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 11 ~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) +|+-+-+ -|..+||+. |+.+|.++.|||..+||. +-|+.|+.+ T Consensus 15 rilptll-efekkgyep-slaeivkasgvsektffm--glkdrlira 57 (92) T d2pg4a1 15 RILPTLL-EFEKKGYEP-SLAEIVKASGVSEKTFFM--GLKDRLIRA 57 (92) T ss_dssp HHHHHHH-HHHHTTCCC-CHHHHHHHHCCCHHHHHT--THHHHHHHT T ss_pred HHHHHHH-HHHHCCCCC-CHHHHHHHCCCCHHHHHH--HHHHHHHHH T ss_conf 9988999-998626883-199999872853667754--438899995 No 70 >d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=78.18 E-value=2 Score=19.70 Aligned_cols=98 Identities=9% Similarity=0.029 Sum_probs=55.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHH Q ss_conf 57889999999999998751899999999874467858899---99999999999999970---6787787778999999 Q T0596 79 VASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQI---PAVMRVSRTVQWVREAA---QRDATFMRRALEESTL 152 (213) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 152 (213) +..+++..+++.++.....++.....++...... ...... .....+...+...+..+ |.-.++.........+ T Consensus 1 sa~e~L~~~i~~~~~~~~~~~~~~~i~~~E~~~~-~~~~~~~i~~~~~~~~~~~~~ii~~g~~~G~ir~d~d~~~~a~~i 79 (117) T d1vi0a2 1 TAKEKLALVISKHFSLLAGDHNLAIVTQLELRQS-NLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMI 79 (117) T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 9899999999999999983965677699988537-999999999999999999999999999848865689989999999 Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHH Q ss_conf 9999999998735-999775899999 Q T0596 153 TTIYLMTFFFWMR-DESENSRHTRQF 177 (213) Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 177 (213) .++..++...|+. +...+....... T Consensus 80 ~g~i~~~~~~w~~~~~~~~~~~~~~~ 105 (117) T d1vi0a2 80 FGTIDETVTTWVMNDQKYDLVALSNS 105 (117) T ss_dssp HHHHHHHHHHHHHTTTCSCGGGGHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 99999999998814899999999999 No 71 >d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Probab=77.75 E-value=1.5 Score=20.78 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=37.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 99971789999999999999864841214999999848877787631589889999999999 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRA 62 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~~~ 62 (213) ||....+-.++|=+.-...=.+.|+ |..++|+.+|++.+++.+|-.++..+=...+... T Consensus 2 ~t~~~~~~~~~l~~~i~~~R~~~gl---tq~~lA~~lgis~~~is~~E~g~~~~s~~~l~~i 60 (87) T d1lmb3_ 2 LTQEQLEDARRLKAIYEKKKNELGL---SQESVADKMGMGQSGVGALFNGINALNAYNAALL 60 (87) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 4989999999999999999999399---9999998867228889999811478759999999 No 72 >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=77.47 E-value=1.3 Score=21.21 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +++|-+|+ ..+.++| ..|+.+||+..|++++++++|...- T Consensus 15 ~p~r~~IL----~~L~~~~--~~~~~eLa~~l~is~~~vs~~l~~L 54 (100) T d1ub9a_ 15 NPVRLGIM----IFLLPRR--KAPFSQIQKVLDLTPGNLDSHIRVL 54 (100) T ss_dssp SHHHHHHH----HHHHHHS--EEEHHHHHHHTTCCHHHHHHHHHHH T ss_pred CHHHHHHH----HHHCCCC--CEEHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999----8760479--9019999999862543230999988 No 73 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=76.08 E-value=2 Score=19.72 Aligned_cols=40 Identities=18% Similarity=0.040 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 899999999999998648412149999998488777876315 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++-+.-|.+=..+-.++|. +++.+||+..||+++|+-.-. T Consensus 5 ~s~EdYL~~I~~L~~~~~~--v~~~~iA~~L~vs~~SVt~mv 44 (63) T d2isya1 5 DTTEMYLRTIYDLEEEGVT--PLRARIAERLDQSGPTVSQTV 44 (63) T ss_dssp SHHHHHHHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCC--CCHHHHHHHHCCCCHHHHHHH T ss_conf 7899999999999855897--709999999689944399999 No 74 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=73.95 E-value=0.96 Score=22.28 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=28.0 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHH-----CCCHHHHHHHHHHH Q ss_conf 41214999999848877787631-----58988999999999 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLY-----FREKDELIDAWFDR 61 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~y-----F~sKe~L~~a~~~~ 61 (213) ....|+.+||+++|||++|+++. |.+-.++-.++..+ T Consensus 34 ~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83) T d2o3fa1 34 AIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83) T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 988319999999798998999999995899899999999998 No 75 >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=73.11 E-value=2.7 Score=18.75 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 8999999999999986484---------------121499999984887778763158 Q T0596 7 PMRDAIVDTAVELAAHTSW---------------EAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~---------------~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +.++.+++.-.+++.+.|+ +.+|+.+||+..|++++++|..-. T Consensus 6 ~~~~~~~~~~~~~~~~~Gl~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~ 63 (151) T d1ku9a_ 6 EAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLK 63 (151) T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 9999999999999998399999999999998489892899999986777024999999 No 76 >d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Probab=72.79 E-value=0.99 Score=22.16 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=28.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 99986484121499999984887778763158988999 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) .+|.-+-|++.|..+||+..|||.++++.+..---..+ T Consensus 23 ~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L 60 (106) T d1s7oa_ 23 NYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 60 (106) T ss_dssp HHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 99898999199999999998969999999999999999 No 77 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=71.81 E-value=1.3 Score=21.20 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=26.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 999864841214999999848877787631589 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+|.=+=|.+.|..+||+..|+|+++++.+..- T Consensus 25 ~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~R 57 (106) T d1xsva_ 25 NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRR 57 (106) T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999990875999999989599999999999 No 78 >d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=71.61 E-value=1.4 Score=21.11 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=24.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ++|.-.=|.+.|..+||+..|+|.++++.+. T Consensus 28 ~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~ 58 (71) T d1rp3a2 28 LVIQLIFYEELPAKEVAKILETSVSRVSQLK 58 (71) T ss_dssp HHHHHHHTSCCCHHHHHHHTTSCHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999998684899999999798999999999 No 79 >d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Probab=69.40 E-value=1.5 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 214999999848877787631589 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) |.|..+||+..|+|..|+.+|..+ T Consensus 21 G~s~~eIA~~l~iS~~TV~~~~~~ 44 (67) T d1a04a1 21 GLPNKMIARRLDITESTVKVHVKH 44 (67) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 799899999978888899999999 No 80 >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Probab=69.10 E-value=1.7 Score=20.32 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 7899999999999998648412149999998488777876315898 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) |+...+|+..- .++ ...|.++||+..|+|+++++++...- T Consensus 4 D~~D~~IL~~L----~~n--~r~s~~~iA~~lgis~~tv~~Ri~~L 43 (63) T d2cfxa1 4 DQIDLNIIEEL----KKD--SRLSMRELGRKIKLSPPSVTERVRQL 43 (63) T ss_dssp CHHHHHHHHHH----HHC--SCCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHH----HHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 89999999999----983--99999999999896878999999999 No 81 >d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]} Probab=68.40 E-value=3.4 Score=18.01 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=28.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCC-CHHHHHHHCCCHHH Q ss_conf 999999998648412149999998488-77787631589889 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAV-SLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGv-s~~t~y~yF~sKe~ 53 (213) ++.|..++.+.. .+|.+||...|. +.+.|++.|...-+ T Consensus 3 l~~a~~lL~~t~---~~i~~IA~~~Gf~~~~~F~r~Fk~~~g 41 (62) T d1bl0a2 3 MTEIAQKLKESN---EPILYLAERYGFESQQTLTRTFKNYFD 41 (62) T ss_dssp HHHHHHHHHHCC---CCHHHHHHHTTCSCHHHHHHHHHHHHS T ss_pred HHHHHHHHHCCC---CCHHHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 999999988369---999999999879988999999998889 No 82 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=68.33 E-value=3 Score=18.44 Aligned_cols=32 Identities=19% Similarity=-0.040 Sum_probs=24.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999999986484121499999984887778763158 Q T0596 14 DTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 14 ~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+-..+ .+.|+ |..+||++.|+|++.+.+|.. T Consensus 21 ~a~~~l-~~~g~---s~~eiA~~~G~s~~~V~~~l~ 52 (114) T d1r71a_ 21 DFIGRE-LAKGK---KKGDIAKEIGKSPAFITQHVT 52 (114) T ss_dssp HHHHHH-HHTTC---CHHHHHHHHTCCHHHHHHHHG T ss_pred HHHHHH-HHHCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 999999-88099---899999997772999999999 No 83 >d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]} Probab=68.16 E-value=1.6 Score=20.53 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.8 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) -|+.++|+..|||+.|+.+|= |.+|+ T Consensus 3 ytI~e~A~~~gvs~~tlR~Ye--~~GLl 28 (109) T d1r8da_ 3 YQVKQVAEISGVSIRTLHHYD--NIELL 28 (109) T ss_dssp BCHHHHHHHHSCCHHHHHHHH--HTTSS T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 229999999896999999998--86895 No 84 >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Probab=67.46 E-value=3.5 Score=17.88 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=24.0 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 998648412149999998488777876315898 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +...+| ..|+.+||+..|++++++.++-..- T Consensus 30 L~~~~~--~~t~~eLa~~~~i~~~tvs~~l~~L 60 (109) T d2d1ha1 30 MVEIEK--PITSEELADIFKLSKTTVENSLKKL 60 (109) T ss_dssp HHHHCS--CEEHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHCCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 997698--9889999999885676999999999 No 85 >d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Probab=67.41 E-value=1.7 Score=20.28 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=21.9 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 12149999998488777876315898 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+.|..+||++.|+|..|+..|..+- T Consensus 18 ~G~s~~eIA~~L~is~~TV~~~~~~i 43 (67) T d1fsea_ 18 QDKTTKEIASELFISEKTVRNHISNA 43 (67) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 36989999999888888999999999 No 86 >d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Probab=65.80 E-value=1.9 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 214999999848877787631589889 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +.|-.++|+..|||+.++++|=.++.. T Consensus 14 gltQ~elA~~LGvs~~ti~~yE~G~r~ 40 (67) T d2auwa1 14 NLSLTTAAEALGISRRMVSYYRTAHKI 40 (67) T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSSC T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 999999999959989999999869999 No 87 >d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Probab=65.67 E-value=1.9 Score=19.89 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 2149999998488777876315898 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +.|..+||++.|+|..|+.+|..+- T Consensus 19 G~s~~eIA~~l~iS~~TV~~~~~~i 43 (65) T d1l3la1 19 GKTMEEIADVEGVKYNSVRVKLREA 43 (65) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 6988899999788899999999999 No 88 >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Probab=65.24 E-value=3 Score=18.42 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=22.7 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999986484121499999984887778763158 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) +..+.++| +.|+.+||+..|++++++.+--. T Consensus 36 L~~i~~~~--~~t~~~la~~l~i~~~tvs~~l~ 66 (139) T d2a61a1 36 LQKIYFEG--PKRPGELSVLLGVAKSTVTGLVK 66 (139) T ss_dssp HHHHHHHC--CBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCCCHHHHH T ss_conf 99999769--98999999983988144269999 No 89 >d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=65.06 E-value=1.7 Score=20.29 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=25.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99986484121499999984887778763158988 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+..++|+ |..++|+.+||++++++++-.++. T Consensus 8 ~~R~~~gl---tq~~la~~~gis~~~i~~~E~g~~ 39 (68) T d1b0na2 8 QYRKEKGY---SLSELAEKAGVAKSYLSSIERNLQ 39 (68) T ss_dssp HHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCC T ss_pred HHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 99998299---999999897979999999985998 No 90 >d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]} Probab=65.03 E-value=2 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.1 Q ss_pred HHHHHHHHHHCCCHHHHHHH Q ss_conf 14999999848877787631 Q T0596 28 VRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~y 47 (213) .+|.++|+..||+..|+.|| T Consensus 1 m~Ige~A~~~gvs~~TlR~Y 20 (127) T d1q06a_ 1 MNISDVAKITGLTSKAIRFY 20 (127) T ss_dssp CCHHHHHHHHTCCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHH T ss_conf 97899999989299999999 No 91 >d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Probab=64.99 E-value=1.8 Score=20.14 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=26.4 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 998648412149999998488777876315898899 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +-.++|+ |..++|+.+||+.+++.+|-.++... T Consensus 9 lR~~~g~---tq~elA~~~gis~~~is~~e~g~~~p 41 (66) T d1utxa_ 9 IREKKKI---SQSELAALLEVSRQTINGIEKNKYNP 41 (66) T ss_dssp HHHHTTC---CHHHHHHHHTSCHHHHHHHHTTSCCC T ss_pred HHHHCCC---CHHHHHHHCCCCHHHHHHHHCCCCCC T ss_conf 9998599---99999886355798999998699899 No 92 >d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Probab=64.82 E-value=1.8 Score=20.15 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=25.1 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9986484121499999984887778763158988 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +-.++| .|..++|+.+||+++++++|..+|. T Consensus 9 ~R~~~g---~sq~elA~~~gvs~~~is~~E~g~~ 39 (63) T d1r69a_ 9 KRIQLG---LNQAELAQKVGTTQQSIEQLENGKT 39 (63) T ss_dssp HHHHTT---CCHHHHHHHHTSCHHHHHHHHTTSC T ss_pred HHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 999849---9699999983739999999878989 No 93 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=64.77 E-value=3.5 Score=17.85 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99999999999998648412149999998488777876315 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) -|+.|..+ +.+.|+ ++..-|+..|||+.|||+.. T Consensus 21 Er~~I~~a----L~~~~g---n~~~aA~~LGIsR~TL~rkm 54 (60) T d1umqa_ 21 RWEHIQRI----YEMCDR---NVSETARRLNMHRRTLQRIL 54 (60) T ss_dssp HHHHHHHH----HHHTTS---CHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHH----HHHHCC---CHHHHHHHHCCCHHHHHHHH T ss_conf 99999999----999668---59999999898899999999 No 94 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=64.70 E-value=2.3 Score=19.23 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 9998648412149999998488777876315898 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .++.++ ...|+.+||++.|+|+++++++...- T Consensus 10 ~~L~~n--~r~s~~~lA~~~gls~~~v~~Ri~~L 41 (60) T d1i1ga1 10 EILEKD--ARTPFTEIAKKLGISETAVRKRVKAL 41 (60) T ss_dssp HHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999884--99999999999892999999999999 No 95 >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Probab=63.65 E-value=2.4 Score=19.09 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=25.9 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99998648412149999998488777876315 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) .++|.-+=|.+.|..+||+..|+|.+++..+. T Consensus 24 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l 55 (68) T d1or7a1 24 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 55 (68) T ss_dssp HHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999909899999999894999999999 No 96 >d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Probab=63.62 E-value=2.2 Score=19.40 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.0 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1214999999848877787631589 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .|.|..+||...|+|..|+..|..+ T Consensus 26 ~G~s~~eIA~~l~iS~~TV~~~~~~ 50 (70) T d1yioa1 26 RGLMNKQIAGELGIAEVTVKVHRHN 50 (70) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2899999998979799999999999 No 97 >d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]} Probab=62.98 E-value=2.2 Score=19.40 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.7 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 1499999984887778763158988999 Q T0596 28 VRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) -|+.++|+..|||+.|+.+|= +.+|+ T Consensus 4 ytI~evA~~~gvs~~tlR~Ye--~~GLl 29 (118) T d1r8ea1 4 YSIGEVSKLANVSIKALRYYD--KIDLF 29 (118) T ss_dssp EEHHHHHHHHTCCHHHHHHHH--HTTSS T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 019999999896999999999--85885 No 98 >d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Probab=62.93 E-value=2.3 Score=19.29 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 21499999984887778763158988 Q T0596 27 AVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +.|-.++|+..||+.+++.+|=.++. T Consensus 12 gltQ~elA~~lGvs~~tvs~~E~G~~ 37 (62) T d2ppxa1 12 KLTQEEFSARYHIPLGTLRDWEQGRS 37 (62) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTSS T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 99999999996989999998877988 No 99 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=62.85 E-value=2 Score=19.69 Aligned_cols=40 Identities=15% Similarity=0.000 Sum_probs=29.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH Q ss_conf 9998648412149999998488777876315898899999999 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFD 60 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~ 60 (213) .+..++|+ |..++|+.+||+++++++|-.++...-...+. T Consensus 10 ~~R~~~g~---tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~ 49 (66) T d2r1jl1 10 ARRKKLKI---RQAALGKMVGVSNVAISQWERSETEPNGENLL 49 (66) T ss_dssp HHHHHHTC---CHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHH T ss_pred HHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH T ss_conf 99998599---99999999798999999998699899999999 No 100 >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Probab=62.74 E-value=2.9 Score=18.53 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 899999999999998648412149999998488777876315898 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +.-.+||. ++.++ ...|..+||+..|+|..+++++...- T Consensus 5 ~~D~~IL~----~L~~~--~r~s~~eiA~~l~ls~~~v~~Ri~rL 43 (63) T d2cg4a1 5 NLDRGILE----ALMGN--ARTAYAELAKQFGVSPETIHVRVEKM 43 (63) T ss_dssp HHHHHHHH----HHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHH----HHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 89999999----99983--89999999999893999999999999 No 101 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Probab=61.62 E-value=2.2 Score=19.51 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=25.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99986484121499999984887778763158988 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .+-.+.|+ |-.++|+.+||+++++.+|-.++. T Consensus 10 ~~R~~~gl---tq~~lA~~~gvs~~ti~~~E~g~~ 41 (65) T d2croa_ 10 KRRIALKM---TQTELATKAGVKQQSIQLIEAGVT 41 (65) T ss_dssp HHHHHTTC---CHHHHHHHHTSCHHHHHHHHTTCC T ss_pred HHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 99998499---999999997867949998787799 No 102 >d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Probab=61.55 E-value=4.4 Score=17.09 Aligned_cols=41 Identities=10% Similarity=-0.054 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 99999999986484121499999984887778763158988999 Q T0596 12 IVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 12 Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) |=+.-..+-.++|+ |..++|+.+|++++++++|-.++...= T Consensus 10 ~g~~ik~~R~~~gl---tq~~lA~~~gis~~~i~~~E~g~~~p~ 50 (69) T d1y7ya1 10 FGQRLRELRTAKGL---SQETLAFLSGLDRSYVGGVERGQRNVS 50 (69) T ss_dssp HHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCSCCB T ss_pred HHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 99999999998399---999998682998989999987999999 No 103 >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=61.53 E-value=1.7 Score=20.29 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=23.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 999864841214999999848877787631589 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) ..+.++| ..|+.+||+.+|++++++|..... T Consensus 27 ~~L~~~g--~~t~~eia~~~~i~~~~v~~~l~~ 57 (109) T d1sfxa_ 27 SLLLERG--GMRVSEIARELDLSARFVRDRLKV 57 (109) T ss_dssp HHHHHHC--CBCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH T ss_conf 9988238--998999999857983559999999 No 104 >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=61.48 E-value=4.4 Score=17.08 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 89999999999999864841--------2149999998488777876315898 Q T0596 7 PMRDAIVDTAVELAAHTSWE--------AVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~--------~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +.|++|...-+.+..+.|-. ..|-.+||.-+|+++.++.+.+..- T Consensus 1 ~v~~Rla~~Ll~l~~~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~~l 53 (81) T d2gaua1 1 HVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTF 53 (81) T ss_dssp CHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 98899999999999983998899778606899999999799899999999999 No 105 >d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Probab=61.27 E-value=3.3 Score=18.05 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=28.9 Q ss_pred HCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH Q ss_conf 648412149999998488777876315898899999 Q T0596 22 HTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDA 57 (213) Q Consensus 22 e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a 57 (213) |.|- ..+-.+||+.-||+++|+-....+|+.++.. T Consensus 21 e~g~-k~sq~eIA~~fGv~~STvs~IlKnK~kil~~ 55 (66) T d1hlva1 21 EENP-DLRKGEIARRFNIPPSTLSTILKNKRAILAS 55 (66) T ss_dssp HHCT-TSCHHHHHHHHTCCHHHHHHHHHTHHHHHHH T ss_pred HCCC-CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 8087-2109999999599764799999879999988 No 106 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} SCOP: d1r71b_ d1r71d_ d1r71c_ Probab=61.18 E-value=4.5 Score=17.04 Aligned_cols=33 Identities=18% Similarity=-0.067 Sum_probs=24.9 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 9999999864841214999999848877787631589 Q T0596 14 DTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 14 ~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+..+++ +.|+ |..+||++.|.|++.+.++..= T Consensus 21 ~a~~rl~-~~g~---t~~eiA~~lGks~s~Vs~~l~L 53 (114) T d1r71a_ 21 DFIGREL-AKGK---KKGDIAKEIGKSPAFITQHVTL 53 (114) T ss_dssp HHHHHHH-HTTC---CHHHHHHHHTCCHHHHHHHHGG T ss_pred HHHHHHH-HHCC---CHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998-8416---8889999984138999999988 No 107 >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=60.82 E-value=3.2 Score=18.13 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 99999999999998648412149999998488777876315898 Q T0596 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .-.+|+.. +.+. ...|+.+||++.|+|.+++++....- T Consensus 4 ~D~~Il~~----L~~n--~r~s~~eiA~~l~ls~~~v~~Ri~~L 41 (60) T d2cyya1 4 IDKKIIKI----LQND--GKAPLREISKITGLAESTIHERIRKL 41 (60) T ss_dssp HHHHHHHH----HHHC--TTCCHHHHHHHHCSCHHHHHHHHHHH T ss_pred HHHHHHHH----HHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999----9982--89999999999893999999999999 No 108 >d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Probab=60.77 E-value=4.5 Score=16.99 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=24.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999999986484121499999984887778763158 Q T0596 14 DTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 14 ~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .+...|. +.|+ |..+||++.|.|+++++++.. T Consensus 10 ~a~~~L~-e~g~---t~~~iA~~~Gks~~~V~~~Lr 41 (93) T d1vz0a1 10 RGYQALL-EMGL---TQEEVARRVGKARSTVANALR 41 (93) T ss_dssp HHHHHHH-HTTC---CHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHH-HCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999-8499---999999998514699999998 No 109 >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Probab=60.24 E-value=4.6 Score=16.92 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=21.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ..+...| +.+|+.+||++.|++++++.+.. T Consensus 41 ~~L~~~~-g~~t~~~La~~~~~~~~~vs~~i 70 (145) T d2hr3a1 41 GAIDRLG-GDVTPSELAAAERMRSSNLAALL 70 (145) T ss_dssp HHHHHTT-SCBCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHCC-CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999859-99799999999798988999999 No 110 >d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]} Probab=59.25 E-value=3.2 Score=18.14 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=3.8 Q ss_pred HHHHHHHHCCC Q ss_conf 99999984887 Q T0596 30 LYDIAARLAVS 40 (213) Q Consensus 30 v~~IA~~aGvs 40 (213) +..||+..|++ T Consensus 44 l~~iA~~l~v~ 54 (178) T d2fug21 44 IEEIARLVGTT 54 (178) T ss_dssp HHHHHHHHTSC T ss_pred HHHHHHHHCCC T ss_conf 99999997979 No 111 >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Probab=56.72 E-value=5.2 Score=16.50 Aligned_cols=31 Identities=6% Similarity=0.173 Sum_probs=24.2 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 9999986484121499999984887778763 Q T0596 16 AVELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 16 A~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) .+..+.+++-..+|+.+|+++.|++++++.+ T Consensus 34 vL~~l~~~~~~~it~~ela~~~~~~~~~vs~ 64 (135) T d3broa1 34 IIDYLSRNKNKEVLQRDLESEFSIKSSTATV 64 (135) T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 9999997079999999999998968868999 No 112 >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=55.98 E-value=5.4 Score=16.41 Aligned_cols=39 Identities=8% Similarity=0.254 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999999999999864841214999999848877787631 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) .+.+.+.-..+|.+.||.--++++||+..|++...+-.+ T Consensus 5 q~~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~l 43 (64) T d1lvaa3 5 QKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEEL 43 (64) T ss_dssp HHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999999999986999995999998919999999999 No 113 >d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=55.16 E-value=5.5 Score=16.32 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=26.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999999998648412149999998488777876315898 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +-.-++.+. +| .|+.++|+++|||++++.++=.+| T Consensus 15 lG~~ir~~R-~~---~t~~eLA~~~Gvs~~~ls~iE~G~ 49 (82) T d2ofya1 15 LGELLRSAR-GD---MSMVTVAFDAGISVETLRKIETGR 49 (82) T ss_dssp HHHHHHHHH-TT---SCHHHHHHHHTCCHHHHHHHHTTC T ss_pred HHHHHHHHH-HC---CCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 999999999-80---799999989717999999998298 No 114 >d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=54.45 E-value=4 Score=17.44 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=24.8 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 998648412149999998488777876315898899 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +=..+| .|..++|+.+||+.+++.+|=.++... T Consensus 14 ~R~~~g---ltq~~lA~~~gis~~~is~~E~G~~~p 46 (78) T d1x57a1 14 GRQSKG---LTQKDLATKINEKPQVIADYESGRAIP 46 (78) T ss_dssp HHHTTT---CCHHHHHHHHTSCHHHHHHHHHTCSCC T ss_pred HHHHCC---CCHHHHHHCCCCCHHHHHHHHCCCCCC T ss_conf 999859---972678871887899999998067799 No 115 >d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Probab=54.00 E-value=2.7 Score=18.74 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=30.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH Q ss_conf 9998648412149999998488777876315898899999999 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFD 60 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~~ 60 (213) ++..++| +|..++|+..||++.++.++-.+|..+=..++. T Consensus 8 e~r~~~g---lsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~ 47 (87) T d2icta1 8 ESLDELN---VSLREFARAMEIAPSTASRLLTGKAALTPEMAI 47 (87) T ss_dssp HHHHHHT---CCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHH T ss_pred HHHHHCC---CCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHH T ss_conf 9999869---999999999724699999999850179899999 No 116 >d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]} Probab=53.68 E-value=5.8 Score=16.15 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 7899999999999998648412149999998488777876315898899 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) ++..=.|+....+-+.+.|..- +++.+++..|.+.+.+|.-|++.-.- T Consensus 41 t~~HW~vI~~lR~~y~~~~~~P-~~R~l~K~~~~~~k~L~~LFp~~Pak 88 (103) T d2v4jc1 41 SPDHQKIIDFLQDYYKKNGIAP-MVRILSKNTGFKLKEVYELFPSGPGK 88 (103) T ss_dssp CHHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHCCCHHHHHHHSTTHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCHHHHHHHHHCCCCHHH T ss_conf 8999999999999999968997-09999998560276999976998899 No 117 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=53.09 E-value=3.8 Score=17.62 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9999999999998648412149999998488777876315 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) -..+|..|++ +.| ++...|+..|+++.++|+-. T Consensus 22 Er~~I~~aL~---~~g----n~~~aA~~Lgisr~tL~rKl 54 (61) T d1g2ha_ 22 EAQVLKLFYA---EYP----STRKLAQRLGVSHTAIANKL 54 (61) T ss_dssp HHHHHHHHHH---HSC----SHHHHHHHTTSCTHHHHHHH T ss_pred HHHHHHHHHH---HCC----CHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999---878----99999999798899999999 No 118 >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Probab=52.41 E-value=6.1 Score=16.00 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=18.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999864841214999999848877787631 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.+.| +.|+.+||+..+++++++.+. T Consensus 42 ~~l~~~~--~~t~~~la~~~~i~~~~vs~~ 69 (143) T d1s3ja_ 42 ASLKKHG--SLKVSEIAERMEVKPSAVTLM 69 (143) T ss_dssp HHHHHHS--EEEHHHHHHHHTSCHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 9999779--989999999989698899999 No 119 >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Probab=52.26 E-value=6.1 Score=15.98 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=20.6 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 999986484121499999984887778763 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) +.++.++| ++|+.+||+..|++++++.. T Consensus 47 L~~l~~~~--~~t~~~la~~~~l~~~tvs~ 74 (162) T d2fxaa1 47 LWIAYQLN--GASISEIAKFGVMHVSTAFN 74 (162) T ss_dssp HHHHHHHT--SEEHHHHHHHTTCCHHHHHH T ss_pred HHHHCCCC--CCCHHHHHHHHCCCCHHHHH T ss_conf 96521189--91899999997699403199 No 120 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Probab=50.23 E-value=6.5 Score=15.76 Aligned_cols=29 Identities=7% Similarity=0.180 Sum_probs=22.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999864841214999999848877787631 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) +..+.++| ++|+.+||+..|++++++.+- T Consensus 36 L~~l~~~~--~~t~~~la~~~~i~~~~vs~~ 64 (136) T d2fbia1 36 IRILRQQG--EMESYQLANQACILRPSMTGV 64 (136) T ss_dssp HHHHHHHC--SEEHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 99999769--989999999988789889999 No 121 >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=49.84 E-value=6.6 Score=15.71 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=23.4 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 99998648412149999998488777876315 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +..+.+.+-+++|+.+||+..|++++++.+.. T Consensus 39 L~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v 70 (125) T d1p4xa2 39 LAIITSQNKNIVLLKDLIETIHHKYPQTVRAL 70 (125) T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHH T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH T ss_conf 99999803788369999999789842499999 No 122 >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=49.55 E-value=6.7 Score=15.68 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=26.1 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 484121499999984887778763158988 Q T0596 23 TSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 23 ~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ...+...+.+||++.|+++..|-.+|-++- T Consensus 44 ~~p~~~~~~~la~~~gl~~~~i~vWFqN~R 73 (80) T d1wh7a_ 44 QKHDDVAVEQFCAETGVRRQVLKIWMHNNK 73 (80) T ss_dssp CSSTTHHHHHHHHHSCCCHHHHHHHHHTTS T ss_pred CCCCHHHHHHHHHHHCCCHHHEEEECCCCC T ss_conf 696999999999997889889510030376 No 123 >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=49.39 E-value=6.7 Score=15.66 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999999998648-4121499999984887778763158988 Q T0596 11 AIVDTAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 11 ~Il~AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .||+.. |.+.. .+.....+||+..|++...|..+|.++- T Consensus 10 ~~Le~~---F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR 49 (53) T d1le8a_ 10 AFLEQV---FRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 49 (53) T ss_dssp HHHHHH---HHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHHHH T ss_pred HHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999---9838998999999999997899888899888344 No 124 >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Probab=48.87 E-value=6.8 Score=15.60 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=32.6 Q ss_pred HHHHHHHHH-CCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999986-484-12149999998488777876315898899 Q T0596 14 DTAVELAAH-TSW-EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 14 ~AA~~l~~e-~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +.--..|.. ..| +.....+||+..|++...|.-+|-++-.= T Consensus 14 ~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak 56 (72) T d1uhsa_ 14 EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72) T ss_dssp HHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999874233899999999999399789999989999999 No 125 >d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=48.34 E-value=6.9 Score=15.55 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 45788999999999999875189999999987446785 Q T0596 78 LVASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHI 115 (213) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (213) .+|.+.++.++...+++...+|++...+..+...+... T Consensus 2 ~~P~ealr~~i~~~~~~~~~~P~~~rl~~~E~~~~~~~ 39 (126) T d1pb6a2 2 FAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPL 39 (126) T ss_dssp SCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTCTT T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH T ss_conf 88899999999999999998933879999887459931 No 126 >d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]} Probab=48.30 E-value=5.4 Score=16.40 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.6 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 1214999999848877787631589 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) .+.+..+||+..++|..|+-+|..+ T Consensus 36 ~G~s~~eIA~~l~iS~~TV~~~~~~ 60 (87) T d1p4wa_ 36 EGFLVTEIAKKLNRSIKTISSQKKS 60 (87) T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2899999987869799999999999 No 127 >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Probab=47.96 E-value=7 Score=15.50 Aligned_cols=41 Identities=5% Similarity=0.240 Sum_probs=32.6 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ++.--..|.+..| +.-...+||...|++...|--+|-++-. T Consensus 12 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 53 (58) T d1ig7a_ 12 LLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 53 (58) T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHH T ss_conf 999999999878888999999999929994061000712676 No 128 >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=47.39 E-value=6.6 Score=15.71 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=29.5 Q ss_pred HHHHHH-CCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999986-484-1214999999848877787631589889 Q T0596 17 VELAAH-TSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 17 ~~l~~e-~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) -+.|.. ..| +...+.+||++.|++...+..+|.++-. T Consensus 17 E~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~ 55 (59) T d2cqxa1 17 EKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 55 (59) T ss_dssp HHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 999988489959999999999978199999999996161 No 129 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=47.36 E-value=5.6 Score=16.29 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=21.1 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 41214999999848877787631589 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) =..+|+.+||+..|++++++-++-.. T Consensus 19 ~~~lt~~eLa~~l~i~~~~vs~~l~~ 44 (85) T d3ctaa1 19 RAYLTSSKLADMLGISQQSASRIIID 44 (85) T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99988999999988788789999999 No 130 >d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=47.36 E-value=7.2 Score=15.44 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=59.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 345788999999999999875189999999987446-785889999999----999999999970678778777899999 Q T0596 77 DLVASERIHHLIMIWLDALAVQRKVTRQMIMSKLEF-GHIHIQIPAVMR----VSRTVQWVREAAQRDATFMRRALEEST 151 (213) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (213) ..+|++.++..+..+++....|......+....... ............ ....|... .+.|.......+...+.. T Consensus 2 ~~d~~~~~r~~~~a~~~~~~~h~~vm~a~~q~a~~~~e~~~~w~~~~~~~i~~ia~~I~~~-q~~G~a~~~ld~~~~A~A 80 (120) T d1t56a2 2 DTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAE-RDRGAAPRTLPAHELATA 80 (120) T ss_dssp CCSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSCCCSCHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHH T ss_conf 9988999999999999999972999999999985389999999999999999999999999-876999999999999999 Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH Q ss_conf 999999999987359997--7589999999999 Q T0596 152 LTTIYLMTFFFWMRDESE--NSRHTRQFLKRHL 182 (213) Q Consensus 152 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l 182 (213) +..+....+..++....+ +.+.....+.+.. T Consensus 81 L~~M~er~~~~~~~~~~~~~d~e~~v~tL~~iW 113 (120) T d1t56a2 81 LNLMNERTLFASFAGEQPSVPEARVLDTLVHIW 113 (120) T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999998745989999999999999999 No 131 >d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]} Probab=46.75 E-value=7.3 Score=15.37 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=28.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999986484121499999984887778763 Q T0596 15 TAVELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 15 AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) -.++.+.+.|...+|=.+||+.+|++...+-+ T Consensus 13 r~L~~l~~~g~~~vSS~~La~~~gi~~~qVRK 44 (74) T d2dt5a1 13 RILEELEAQGVHRTSSEQLGGLAQVTAFQVRK 44 (74) T ss_dssp HHHHHHHHTTCCEECHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHHCCCEEECHHHHHHHHCCCHHHHHH T ss_conf 99999998799159699999997969999998 No 132 >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=46.08 E-value=6.9 Score=15.56 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=28.9 Q ss_pred HHHHHC-C-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999864-8-41214999999848877787631589889 Q T0596 18 ELAAHT-S-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 18 ~l~~e~-G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ..|.+. . .+.....+||+..|++...|..+|.++-. T Consensus 10 ~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~ 47 (52) T d1x2ma1 10 KVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN 47 (52) T ss_dssp HHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 99978689939999999999979699998998786044 No 133 >d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]} Probab=45.68 E-value=6.4 Score=15.83 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.4 Q ss_pred HHHHHHHHHCCCHHHHHHH Q ss_conf 4999999848877787631 Q T0596 29 RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~y 47 (213) +..-+|+..||+++++|.+ T Consensus 12 ~~~k~A~algis~~AVsqW 30 (61) T d1rzsa_ 12 TQRAVAKALGISDAAVSQW 30 (61) T ss_dssp SHHHHHHHHTCCHHHHHHC T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999969989999988 No 134 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=44.95 E-value=7.7 Score=15.17 Aligned_cols=34 Identities=6% Similarity=0.175 Sum_probs=23.7 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHCCCH----HHHHHHHH Q ss_conf 12149999998488777876315898----89999999 Q T0596 26 EAVRLYDIAARLAVSLDEIRLYFREK----DELIDAWF 59 (213) Q Consensus 26 ~~~tv~~IA~~aGvs~~t~y~yF~sK----e~L~~a~~ 59 (213) .++|++.|++.+|++.+|+-+-+.-. |.++...+ T Consensus 21 rG~sLa~lsr~~gls~stl~naL~rp~pKgEriIA~aL 58 (74) T d1nera_ 21 RKLSLSALSRQFGYAPTTLANALERHWPKGEQIIANAL 58 (74) T ss_dssp SSCCHHHHHHHHSCCHHHHHHTTTSSCHHHHHHHHHHT T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 68879999999099878999998377858999999997 No 135 >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Probab=44.33 E-value=6.9 Score=15.55 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHCCCHHHHHHHCCC Q ss_conf 89999999999999864841---------214999999848877787631589 Q T0596 7 PMRDAIVDTAVELAAHTSWE---------AVRLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~---------~~tv~~IA~~aGvs~~t~y~yF~s 50 (213) +.+++|..--+.+..+.|.. ..|..+||.-.|+++.|+.+.+.. T Consensus 1 dv~~Rla~~Ll~l~~~~g~~~~~~~~i~~~~t~~eiA~~lG~sretvsr~l~~ 53 (80) T d1ft9a1 1 DIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNS 53 (80) T ss_dssp HHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 98899999999999985998899717853789999999979889999999999 No 136 >d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=43.91 E-value=3.3 Score=18.10 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 8999999999999986484121499999984887778763158988 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) +..-.|+....+.+.+.|..- +++.+++..|.+.+.+|.-|++.- T Consensus 50 ~~Hw~vI~~lR~~y~~~~~~P-~~R~l~k~~~~~~~~L~~LFp~gP 94 (111) T d1ji8a_ 50 EEHWKLVKYLREYWETFGTCP-PIKMVTKETGFSLEKIYQLFPSGP 94 (111) T ss_dssp HHHHHHHHHHHHHTTTTSCCC-CSTTGGGGSCCCHHHHHHHTTSCH T ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHCCCCH T ss_conf 999999999999999978997-089999982868899999859989 No 137 >d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=43.41 E-value=4.1 Score=17.37 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=36.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 78999999999999986484121499999984887778763158988 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++..-.|+....+.+.+.|..- +++.+++..|.+.+.+|.-|++.- T Consensus 49 te~HW~iI~~lR~~y~e~~~~P-~~R~l~k~~~~~~~~L~~LFP~gP 94 (111) T d1ji8a_ 49 TEEHWKLVKYLREYWETFGTCP-PIKMVTKETGFSLEKIYQLFPSGP 94 (111) T ss_dssp CHHHHHHHHHHHHHTTTTSCCC-CSTTGGGGSCCCHHHHHHHTTSCH T ss_pred CHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHCCCCH T ss_conf 7789999999999998708998-367999983657668885528876 No 138 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=41.67 E-value=8.2 Score=15.00 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=4.1 Q ss_pred HHHHHCCCHHHHH Q ss_conf 9998488777876 Q T0596 33 IAARLAVSLDEIR 45 (213) Q Consensus 33 IA~~aGvs~~t~y 45 (213) .|+..|+++.|+| T Consensus 68 aA~~LGisR~tL~ 80 (89) T d1etxa_ 68 AALMMGINRGTLR 80 (89) T ss_dssp HHHHHTSCHHHHH T ss_pred HHHHHCCCHHHHH T ss_conf 9999897899999 No 139 >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Probab=41.47 E-value=8.7 Score=14.79 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=17.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 999986484121499999984887778763 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) +..+.++| ++|+.+||+..|++++++-+ T Consensus 40 L~~l~~~~--~~t~~ela~~~~i~~~~vs~ 67 (138) T d1jgsa_ 40 LCSIRCAA--CITPVELKKVLSVDLGALTR 67 (138) T ss_dssp HHHHHHHS--SBCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHH T ss_conf 88687180--98999999997878857999 No 140 >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Probab=41.33 E-value=8.7 Score=14.77 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=23.3 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 999986484121499999984887778763158 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) ++++.+ | .+|-.+||+..|++++|+.++.. T Consensus 5 l~~i~~-~--pisr~eLa~~~gls~~TVs~~v~ 34 (62) T d2hoea1 5 LKRIMK-S--PVSRVELAEELGLTKTTVGEIAK 34 (62) T ss_dssp HHHHHH-S--CBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHH-C--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999997-8--96999999998939999999999 No 141 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Probab=41.27 E-value=8.7 Score=14.77 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=20.8 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999864841214999999848877787631 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.+++ ++|..+||+..|++++++-+- T Consensus 36 ~~i~~~~--~~t~~~la~~l~i~~~tvs~~ 63 (144) T d1lj9a_ 36 VRVCENP--GIIQEKIAELIKVDRTTAARA 63 (144) T ss_dssp HHHHHST--TEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 9998289--989999999878247169999 No 142 >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=41.25 E-value=6.1 Score=15.96 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=29.5 Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 99999998648-41214999999848877787631589889 Q T0596 14 DTAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 14 ~AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ++--..|.... .+......||+..|++...|..+|.++-. T Consensus 12 ~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~ 52 (58) T d1au7a1 12 DALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 52 (58) T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999998836999999999999968999999999799848 No 143 >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=41.08 E-value=8.8 Score=14.75 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 9999999999999864841--------2149999998488777876315898 Q T0596 8 MRDAIVDTAVELAAHTSWE--------AVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 8 ~R~~Il~AA~~l~~e~G~~--------~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ..++|...-+.+..+.|-. .+|-.+||.-+|+++.++-+.+..- T Consensus 2 v~~Rla~~Ll~l~~~~g~~~~~~~i~l~lt~~~lA~~~G~sRetvsr~L~~l 53 (69) T d1i5za1 2 VTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKML 53 (69) T ss_dssp HHHHHHHHHHHGGGSTTCCCCSSSCEEECCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 8899999999999980998889745617899999989799799999999999 No 144 >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Probab=40.93 E-value=8.8 Score=14.73 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 999999999998648412149999998488777876315 Q T0596 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) +.=...-+.++.++| .+|-.+||+..|+|++|+.++- T Consensus 4 ~~N~~~Il~~i~~~g--~~sr~eLa~~~gLS~~Tvs~iv 40 (70) T d1z6ra1 4 QTNAGAVYRLIDQLG--PVSRIDLSRLAQLAPASITKIV 40 (70) T ss_dssp HHHHHHHHHHHHSSC--SCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 789999999999949--9289999999894999999999 No 145 >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Probab=39.99 E-value=9.1 Score=14.63 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=19.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999864841214999999848877787631 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.++| ++|+.+||+..|++++++.+- T Consensus 39 ~~l~~~~--~~t~~~La~~l~i~~~~vs~~ 66 (140) T d2etha1 39 LYVALFG--PKKMKEIAEFLSTTKSNVTNV 66 (140) T ss_dssp HHHHHHC--CBCHHHHHHHTTSCHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHH T ss_conf 9999869--959999999989698799999 No 146 >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Probab=39.85 E-value=9.1 Score=14.61 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=19.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ..+..+| +.|+.+||+..|++++++.+.. T Consensus 41 ~~i~~~~--~~t~~~la~~l~~~~~~~s~~l 69 (136) T d2bv6a1 41 TILWDES--PVNVKKVVTELALDTGTVSPLL 69 (136) T ss_dssp HHHHHSS--EEEHHHHHHHTTCCTTTHHHHH T ss_pred HHHHCCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 9997289--9799999999797883799999 No 147 >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Probab=39.60 E-value=9.2 Score=14.58 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=21.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 99986484121499999984887778763158 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~ 49 (213) ..+.++| ++|+.+||+..|++++++-+... T Consensus 40 ~~l~~~~--~~t~~~La~~~~i~~~~vsr~i~ 69 (137) T d1z91a1 40 LLLWEHE--TLTVKKMGEQLYLDSGTLTPMLK 69 (137) T ss_dssp HHHHHHS--EEEHHHHHHTTTCCHHHHHHHHH T ss_pred HHHHCCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9987589--99899999997968888979999 No 148 >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1omqa_ d2hi3a1 Probab=39.20 E-value=9.3 Score=14.54 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=31.4 Q ss_pred HHHHHHHHHHCCCCH-HHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999998648412-149999998488777876315898899 Q T0596 13 VDTAVELAAHTSWEA-VRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 13 l~AA~~l~~e~G~~~-~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) +.+--..|.+..|=. -...+||+.+|++...|-.+|-|+-.- T Consensus 39 l~~Le~~F~~n~yP~~~~r~~LA~~lgl~~~~V~vWFQNrR~k 81 (88) T d1b72a_ 39 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 81 (88) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHH T ss_conf 9999999970699998889999986348812133223474788 No 149 >d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]} Probab=39.05 E-value=9.4 Score=14.52 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=21.5 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHH Q ss_conf 986484121499999984887778763 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y~ 46 (213) |+=.|....|+.+||+..|||+..+.. T Consensus 21 yGl~~~~~~tl~eIa~~lgiS~erVrq 47 (61) T d1ku3a_ 21 KGLIDGREHTLEEVGAYFGVTRERIRQ 47 (61) T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHHHH T ss_pred HCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 477899977899988997988999999 No 150 >d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=38.74 E-value=9.5 Score=14.49 Aligned_cols=104 Identities=8% Similarity=-0.046 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHH---CCCCCCCCHHHH Q ss_conf 5788999999999999875189----9999999874467858899999---99999999999970---678778777899 Q T0596 79 VASERIHHLIMIWLDALAVQRK----VTRQMIMSKLEFGHIHIQIPAV---MRVSRTVQWVREAA---QRDATFMRRALE 148 (213) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~ 148 (213) ++.+++..++..+......+.. .+........ ..+........ ......+...+..+ |.-..+...... T Consensus 2 ~~~~rL~a~~~~~~~~~~~~~~~~GC~~~~~~~E~~-~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~~~~d~~~l 80 (118) T d2hyja2 2 PGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYD-GRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVEQA 80 (118) T ss_dssp TTHHHHHHHHHHHHHHHHSCSSTTSCHHHHHHHHHT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 889999999999999871799999985676897717-7998999999999999999999999999986987888999999 Q ss_pred HHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 9999-9999999998735999775899999999999 Q T0596 149 ESTL-TTIYLMTFFFWMRDESENSRHTRQFLKRHLT 183 (213) Q Consensus 149 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 183 (213) +..+ ....+..+...+..+......+...++..+. T Consensus 81 A~~l~~~~~G~~~~~r~~~d~~~l~~a~~a~~~lL~ 116 (118) T d2hyja2 81 LFEIVAAGLALNAAMQLQHDRTAADRARRAIERALA 116 (118) T ss_dssp HHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 999999999999999980985899999999999985 No 151 >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=38.43 E-value=9.6 Score=14.45 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCHHHHHHH Q ss_conf 99999999999986484---1214999999848877787631 Q T0596 9 RDAIVDTAVELAAHTSW---EAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~---~~~tv~~IA~~aGvs~~t~y~y 47 (213) -++|.+.-.+.+....| +.++.+++|++.|||+.++..- T Consensus 4 ~~qi~~~l~~~I~~g~~~~G~~l~~~~La~~~~vSr~tvr~A 45 (69) T d2hs5a1 4 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREA 45 (69) T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999999999829999929669999999989798999999 No 152 >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Probab=37.82 E-value=9.8 Score=14.38 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHCCCC-HHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999999999864841-21499999984887778763158988 Q T0596 12 IVDTAVELAAHTSWE-AVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 12 Il~AA~~l~~e~G~~-~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) -++.-...|.+..|= .-...+||...|++...|..+|.++- T Consensus 19 q~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR 60 (67) T d1ocpa_ 19 VRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60 (67) T ss_dssp HHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999872579999999999998478899999858788 No 153 >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=37.47 E-value=9.9 Score=14.35 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=16.7 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 99864841214999999848877787631 Q T0596 19 LAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 19 l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) .+.+..=.++|+.+||+..|++++++.+. T Consensus 41 ~l~~~~~~~~t~~~la~~l~~~~~tvs~~ 69 (115) T d2frha1 41 YISENKEKEYYLKDIINHLNYKQPQVVKA 69 (115) T ss_dssp HHHHTCCSEEEHHHHHHHSSSHHHHHHHH T ss_pred HHHCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99808999988999999979788689999 No 154 >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} Probab=37.11 E-value=10 Score=14.30 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHCCCC---HH-HHHHHHHHHCCCHHHHHHHC Q ss_conf 9999999999864841---21-49999998488777876315 Q T0596 11 AIVDTAVELAAHTSWE---AV-RLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 11 ~Il~AA~~l~~e~G~~---~~-tv~~IA~~aGvs~~t~y~yF 48 (213) +|.+.-...+...-|. .+ |.+++|+..|||+.++..-+ T Consensus 2 qi~~~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~Al 43 (78) T d3bwga1 2 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSL 43 (78) T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 799999999984999993999379999999887989999999 No 155 >d2d6ya2 a.121.1.1 (A:75-192) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=36.62 E-value=10 Score=14.25 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999987518999999998744 Q T0596 84 IHHLIMIWLDALAVQRKVTRQMIMSKLE 111 (213) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (213) +..++...|++...||++.+.+.-.... T Consensus 4 L~~~a~~~fD~~~~~P~~~RL~~wEnL~ 31 (118) T d2d6ya2 4 IEGWIDRLLDYHAAHPELLRLLFWEGME 31 (118) T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 8999999999998581799999999861 No 156 >d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Probab=35.57 E-value=6.7 Score=15.66 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=31.5 Q ss_pred HHHHHHHHHHCCCHH---HHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 149999998488777---87631589889999999999999 Q T0596 28 VRLYDIAARLAVSLD---EIRLYFREKDELIDAWFDRADSR 65 (213) Q Consensus 28 ~tv~~IA~~aGvs~~---t~y~yF~sKe~L~~a~~~~~~~~ 65 (213) .|+++..++.|+..| +|.|||.+-|-++.-+++...+. T Consensus 44 ~sl~eai~~~GlkDGMTiSFHHh~R~GD~v~n~Vm~~ia~m 84 (236) T d1xr4a1 44 DSLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEM 84 (236) T ss_dssp SSHHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCCEEEEEHHCCCCCHHHHHHHHHHHHC T ss_conf 53999999808867978885310037137899999999974 No 157 >d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=35.28 E-value=11 Score=14.10 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 78899999999999987518999999998744678588999999999999999997067877877789999999999999 Q T0596 80 ASERIHHLIMIWLDALAVQRKVTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEESTLTTIYLMT 159 (213) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (213) .++.+..+...|+++...+|..+..++. ..+... .........+.......+.. ..........+.+.+.+.+ T Consensus 3 ~ee~l~al~~aY~~FA~~~P~~y~lmf~-----~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~d~~~~a~~lWa~vHG~~ 75 (105) T d1zk8a2 3 MDEAIHALGEAYVAFVRKHPGLYEATFL-----RDEEVR-KAGDGIVKLCLQVLQQYGLE-GENALHATRGFRSICHGFA 75 (105) T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTC-----CCHHHH-HHHHHHHHHHHHHHGGGTCC-HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHC-----CCCCHH-HHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHH T ss_conf 8999999999999999979398898868-----981207-89999999999999850899-8669999999999999299 Q ss_pred HHH Q ss_conf 998 Q T0596 160 FFF 162 (213) Q Consensus 160 ~~~ 162 (213) ... T Consensus 76 ~L~ 78 (105) T d1zk8a2 76 SIE 78 (105) T ss_dssp HHH T ss_pred HHH T ss_conf 998 No 158 >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Probab=34.85 E-value=8.9 Score=14.70 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=28.5 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999864-841214999999848877787631589889 Q T0596 15 TAVELAAHT-SWEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 15 AA~~l~~e~-G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +--..|... =.+......||...|++...|-.+|.++-. T Consensus 12 ~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~ 51 (57) T d1e3oc1 12 ALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQ 51 (57) T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999998657899999999999978799999999999988 No 159 >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Probab=34.50 E-value=11 Score=14.01 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999999998648-412149999998488777876315898899 Q T0596 10 DAIVDTAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 10 ~~Il~AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) -.||++. |.... .+...+..||...|++...|..+|.++-.- T Consensus 15 ~~~Le~~---F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k 57 (76) T d2ecca1 15 LAILKSF---FLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76) T ss_dssp HHHHHHH---HHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH T ss_pred HHHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999---998678999999999999805799999999999999 No 160 >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Probab=34.22 E-value=9 Score=14.68 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=28.8 Q ss_pred HHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999986484-1214999999848877787631589889 Q T0596 16 AVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 16 A~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) --..|....| +......||+..|++...|..+|.++-. T Consensus 19 Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 57 (76) T d2ecba1 19 LQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 57 (76) T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999877888999999999968989999994898999 No 161 >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} Probab=34.18 E-value=11 Score=13.97 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHCCC---CHH-HHHHHHHHHCCCHHHHHHHCCC Q ss_conf 9999999999986484---121-4999999848877787631589 Q T0596 10 DAIVDTAVELAAHTSW---EAV-RLYDIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~---~~~-tv~~IA~~aGvs~~t~y~yF~s 50 (213) ++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-.-+.- T Consensus 12 ~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~ 56 (100) T d1v4ra1 12 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAV 56 (100) T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTT T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999998499999398836999999988798999999999 No 162 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=34.18 E-value=7.6 Score=15.24 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=7.9 Q ss_pred HHHHHHHHHCCCHHHHHH Q ss_conf 499999984887778763 Q T0596 29 RLYDIAARLAVSLDEIRL 46 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~ 46 (213) .+..-|+..|+++.|+|+ T Consensus 66 n~~~AA~~LGI~R~TL~~ 83 (91) T d1ntca_ 66 HKQEAARLLGWGAATLTA 83 (91) T ss_dssp CTTHHHHHTTCCHHHHHH T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 599999997988999999 No 163 >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Probab=34.07 E-value=11 Score=13.96 Aligned_cols=31 Identities=6% Similarity=-0.078 Sum_probs=18.5 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999864841214999999848877787631 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) +..+....-.+.|+.+||+..|++++++-+- T Consensus 38 L~~l~~~~~~~~t~~ela~~l~~~~~~vs~~ 68 (115) T d1hsja1 38 LNHILRSESNEISSKEIAKCSEFKPYYLTKA 68 (115) T ss_dssp HHHHHTCSCSEEEHHHHHHSSCCCHHHHHHH T ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999806899948999999978885359999 No 164 >d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=33.29 E-value=11 Score=13.96 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.6 Q ss_pred HHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 499999984887778763158988999 Q T0596 29 RLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) |+...|++.|+|.+++.+.-.+-|+.+ T Consensus 22 s~t~AA~~l~isq~avs~~l~~lE~~~ 48 (89) T d2esna1 22 NVGTAASELAISASAFSHALGRLRQGL 48 (89) T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHCC T ss_conf 999999987799847559999998657 No 165 >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=33.21 E-value=11 Score=13.86 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=21.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHC Q ss_conf 9998648412149999998488777876315 Q T0596 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 18 ~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF 48 (213) ..+.+.+-..+|+.+||+..+++++++-+.- T Consensus 41 ~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l 71 (125) T d1p4xa1 41 TYLFHQQENTLPFKKIVSDLCYKQSDLVQHI 71 (125) T ss_dssp HHHHSCSCSEEEHHHHHHHSSSCGGGTHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH T ss_conf 9999843698679999999688824399999 No 166 >d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]} Probab=32.56 E-value=10 Score=14.21 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 17899999999999-------998648412149999998488777876315898 Q T0596 5 NDPMRDAIVDTAVE-------LAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 5 ~~~~R~~Il~AA~~-------l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) .+|+++.|-++-.. -+.-.|..=.|+.+-|+..||+.+||.+.-.|. T Consensus 35 seEtK~K~S~~~kG~k~~~~K~v~IdG~~Y~S~~EAAr~LgIs~~TI~~RiKS~ 88 (96) T d1i3ja_ 35 SDITKSKISEKMKGKKPSNIKKISCDGVIFDCAADAARHFKISSGLVTYRVKSD 88 (96) T ss_dssp CHHHHHHHHHHHTTCCCTTCCCEEETTEEESSHHHHHHHHTCCHHHHHHHHHCT T ss_pred CHHHHHHHHHHHCCCCCCCCCCEEECCEEECCHHHHHHHCCCCHHHHHHHHCCC T ss_conf 988999998885389987554357557571467899987089867855432178 No 167 >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=32.22 E-value=9.2 Score=14.58 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHHHHHHC-CCC--HHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 89999999999999864-841--2149999998488777876315898 Q T0596 7 PMRDAIVDTAVELAAHT-SWE--AVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~-G~~--~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) +.+++|..--+.+.... |-. .+|-.+||.-.|+++.++.+.++.- T Consensus 4 dv~~Rla~~Ll~~~~~~~~~~~i~lt~~elA~~lg~sr~tvsr~l~~l 51 (73) T d1zyba1 4 DLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNEL 51 (73) T ss_dssp SHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 899999999998456508986750699999989798899999999999 No 168 >d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]} Probab=31.87 E-value=12 Score=13.70 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH Q ss_conf 899999999999998648412149999998488777876 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIR 45 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y 45 (213) +.-.+|-.+..++..+.|=.. |..+||+++|++..-+. T Consensus 12 e~~~ki~~~~~~l~q~lgReP-T~~EiA~~l~~~~e~V~ 49 (57) T d1l0oc_ 12 EMGNKIRKAKDELSKTRGRAP-TVTEIADHLGISPEDVV 49 (57) T ss_dssp HHHHHHHHHHHHHHHHHTSCC-BHHHHHHHHTSCHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHH T ss_conf 999999999999998729998-99999999793999999 No 169 >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=31.84 E-value=12 Score=13.70 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=29.7 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 9999999986484-121499999984887778763158988 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ++.--..|....| +......||...|++...|..+|.++- T Consensus 15 ~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR 55 (66) T d1bw5a_ 15 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55 (66) T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99999999987899999999999990939788225307688 No 170 >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=31.63 E-value=11 Score=14.00 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=29.9 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999986484-1214999999848877787631589889 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) .+--..|....| +.....+||...|++...|-.+|-++-. T Consensus 15 ~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~ 55 (68) T d1ftta_ 15 YELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRY 55 (68) T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHH T ss_conf 99999998877777899999999849992524252522888 No 171 >d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]} Probab=31.33 E-value=12 Score=13.64 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.0 Q ss_pred HCCCCHHHHHHHHHHHCCCHHHHH Q ss_conf 648412149999998488777876 Q T0596 22 HTSWEAVRLYDIAARLAVSLDEIR 45 (213) Q Consensus 22 e~G~~~~tv~~IA~~aGvs~~t~y 45 (213) =.|....|+.+||+..|||+..+- T Consensus 20 l~~~~~~tl~eI~~~lgiSrerVr 43 (68) T d2p7vb1 20 IDMNTDYTLEEVGKQFDVTRERIR 43 (68) T ss_dssp TTSSSCCCHHHHHHHHTCCHHHHH T ss_pred CCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 899986889999999797899999 No 172 >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Probab=31.19 E-value=11 Score=14.05 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=30.4 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHHH Q ss_conf 999999986484-12149999998488777876315898899 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDEL 54 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~L 54 (213) ..--..|.+.-| +......||...|++...|-.+|.++-.= T Consensus 14 ~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k 55 (68) T d2cuea1 14 EALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 55 (68) T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHHH T ss_conf 999999987689987899999999396933542327130078 No 173 >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Probab=30.91 E-value=11 Score=13.99 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=28.5 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999998648-41214999999848877787631589889 Q T0596 15 TAVELAAHTS-WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 15 AA~~l~~e~G-~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +--..|.... .+......||...|++..-|.-+|.++-. T Consensus 14 ~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~ 53 (57) T d2e1oa1 14 ELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA 53 (57) T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999998579999999999999958987783474122133 No 174 >d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]} Probab=30.71 E-value=5 Score=16.64 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=14.1 Q ss_pred HHHHHHCCCHHHHHHHCCC Q ss_conf 9999848877787631589 Q T0596 32 DIAARLAVSLDEIRLYFRE 50 (213) Q Consensus 32 ~IA~~aGvs~~t~y~yF~s 50 (213) .-+=+||++-|++||.|-+ T Consensus 6 rA~FEaGIklGaLyHQF~G 24 (113) T d2ieca1 6 RAIFEAGITLGAIYHQFCG 24 (113) T ss_dssp HHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHCCHHEEECC T ss_conf 7776420113002202027 No 175 >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=30.55 E-value=13 Score=13.54 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=10.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHCC Q ss_conf 1499999984887778763158 Q T0596 28 VRLYDIAARLAVSLDEIRLYFR 49 (213) Q Consensus 28 ~tv~~IA~~aGvs~~t~y~yF~ 49 (213) .|..+||+.+||+..++-..|+ T Consensus 61 ~t~~eIa~~~~vs~~tI~~~yk 82 (95) T d1aisb2 61 RTQREVAEVARVTEVTVRNRYK 82 (95) T ss_dssp CCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHH T ss_conf 6899999998988999999999 No 176 >d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]} Probab=30.26 E-value=13 Score=13.51 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 8999999999999986484121499999984887 Q T0596 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVS 40 (213) Q Consensus 7 ~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs 40 (213) +.-.+|..+..++..+.|=+. |..+||++.|++ T Consensus 9 e~i~rv~r~~~~l~qe~gReP-t~eEiA~~l~~~ 41 (60) T d1ku2a1 9 ETINKLSRTARQLQQELGREP-SYEEIAEAMGPG 41 (60) T ss_dssp HHHHHHHHHHHHHHHHHTSCC-CHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCC T ss_conf 999999999999999968999-999999988799 No 177 >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Probab=30.12 E-value=12 Score=13.83 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.2 Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 99999986484-121499999984887778763158988 Q T0596 15 TAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 15 AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) .--..|....| +.....+||...|++...|-.+|-++- T Consensus 15 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR 53 (58) T d2craa1 15 ELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRR 53 (58) T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEEECCCCHH T ss_conf 999999666999989999999982999778113240122 No 178 >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Probab=30.11 E-value=12 Score=13.71 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=28.2 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ++.--.+|....| +.-...+||..+|++...|..+|-++-. T Consensus 39 l~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~ 80 (88) T d1b72a_ 39 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 80 (88) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEEECCHHHHH T ss_conf 999999999678875278999999829997784243575878 No 179 >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Probab=28.65 E-value=13 Score=13.40 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=28.2 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHH Q ss_conf 999999986484-121499999984887778763158988 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKD 52 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe 52 (213) ..--..|....| +.....+||+..|++...|--+|-|+- T Consensus 12 ~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrR 51 (53) T d1p7ia_ 12 ARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 51 (53) T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCC T ss_conf 9999999887889889999999995978688022041367 No 180 >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=28.03 E-value=14 Score=13.23 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=31.0 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +.+--..|.+..| +......||...|++...|-.+|.++-. T Consensus 14 ~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~ 55 (65) T d1fjla_ 14 LDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRA 55 (65) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999869998389999999959987895686164789 No 181 >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=27.80 E-value=14 Score=13.20 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=22.7 Q ss_pred HHHHHHHHHCCCC---HH-HHHHHHHHHCCCHHHHHHH Q ss_conf 9999999864841---21-4999999848877787631 Q T0596 14 DTAVELAAHTSWE---AV-RLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 14 ~AA~~l~~e~G~~---~~-tv~~IA~~aGvs~~t~y~y 47 (213) +.-.+.+....|. .+ |.+++|+..|||+.++-.- T Consensus 10 e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~A 47 (74) T d1hw1a1 10 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREV 47 (74) T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999998499999499834999999989798999999 No 182 >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Probab=27.47 E-value=14 Score=13.16 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHH-C-CCCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999999986-4-841214999999848877787631589889 Q T0596 11 AIVDTAVELAAH-T-SWEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 11 ~Il~AA~~l~~e-~-G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) .||+. .|.+ . =.+.-...+||+..|++...|..+|.++-. T Consensus 20 ~~Le~---~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~ 61 (71) T d1wi3a_ 20 GILQS---FIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71) T ss_dssp HHHHH---HHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH T ss_pred HHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999---9998067798999999987827999999998185576 No 183 >d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Probab=27.43 E-value=14 Score=13.16 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHC Q ss_conf 2149999998488777876315 Q T0596 27 AVRLYDIAARLAVSLDEIRLYF 48 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~yF 48 (213) ..|..+||+.+||+..++-.-| T Consensus 61 ~~t~~eIa~~~~vs~~tI~k~y 82 (109) T d1vola2 61 KRTQKEIGDIAGVADVTIRQSY 82 (109) T ss_dssp CCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 9899999999898999999999 No 184 >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=27.39 E-value=14 Score=13.15 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=30.5 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 9999999986484-1214999999848877787631589889 Q T0596 13 VDTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) +.+--..|.+..| +.....+||...|++...|--+|-|+-. T Consensus 13 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~ 54 (67) T d1zq3p1 13 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR 54 (67) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHH T ss_conf 999999999877877899999998709981331056630777 No 185 >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=27.30 E-value=6.1 Score=16.00 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=25.5 Q ss_pred HHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999864-8412149999998488777876315898 Q T0596 18 ELAAHT-SWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 18 ~l~~e~-G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ..|... =.+.....+||+..|++...|..+|.+| T Consensus 15 ~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFqNr 49 (50) T d1s7ea1 15 AIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 49 (50) T ss_dssp HHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHHHC T ss_pred HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCC T ss_conf 99998799999999999999790988922107808 No 186 >d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]} Probab=27.13 E-value=14 Score=13.12 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999999864841214999999848877787631589889999999 Q T0596 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWF 59 (213) Q Consensus 10 ~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sKe~L~~a~~ 59 (213) ..|.+.....+.+.|.+..--.+++.+.----|.-+-|||.++.+....- T Consensus 7 ~dl~~~~~~~l~~~~~~~~~a~~l~~~l~~~~gG~~lYiP~~~~~~~~~R 56 (94) T d1rr7a_ 7 AELNDLLRGELSRLGVDPAHSLEIVVAICKHLGGGQVYIPRGQALDSLIR 56 (94) T ss_dssp HHHHHHHHHHHHHTSSCTTSHHHHHHHHHHHHCSSCCCCCCSHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHH T ss_conf 99999999999980856777999999999997994476306088899999 No 187 >d2hqva1 e.62.1.2 (A:11-186) Hypothetical protein AGR_C_4470p {Agrobacterium tumefaciens [TaxId: 358]} Probab=26.95 E-value=7.4 Score=15.32 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=34.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCH Q ss_conf 999717899999999999998648412149999998488777876315898 Q T0596 1 MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREK 51 (213) Q Consensus 1 ~t~~~~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~yF~sK 51 (213) ||.-...+.+.+......+..++. +..+++||++.|||..-+-...+.- T Consensus 4 ~~~~a~~~~~~~~~r~~a~~ae~P--~~~~rd~A~~lgvSe~ell~a~~~~ 52 (176) T d2hqva1 4 MSIAAQKNDDDRQARALAALAEKP--DGIVEAIAAKAEVAPAEILAILPQG 52 (176) T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCC------CTTTCCSSSCHHHHHTTSCTT T ss_pred CCHHHHHCHHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCHHHHHHHCCCC T ss_conf 322123283889999999998787--8579999988298999999837832 No 188 >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=25.43 E-value=15 Score=12.90 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=29.3 Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 99999986484-1214999999848877787631589889 Q T0596 15 TAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 15 AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) .--.+|....| +.....+||+..|++...|-.+|-|+-. T Consensus 13 ~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~ 52 (57) T d1jgga_ 13 RLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 52 (57) T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHH T ss_conf 9999998779999999999999959986680100413565 No 189 >d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]} Probab=25.38 E-value=12 Score=13.75 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=21.9 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCC-------CHHHHHHHH Q ss_conf 484121499999984887778763158-------988999999 Q T0596 23 TSWEAVRLYDIAARLAVSLDEIRLYFR-------EKDELIDAW 58 (213) Q Consensus 23 ~G~~~~tv~~IA~~aGvs~~t~y~yF~-------sKe~L~~a~ 58 (213) +=|.-+.-..-+=+||++-|++||.|- |++.|-.++ T Consensus 7 kYFn~TdrerA~FEaGIklGaLyHQFvGtPVs~~sa~sle~AI 49 (120) T d2i52a1 7 KYFNCTDIQRAFFEAGIKLGAIFHQYTGIPVNSENASMAEEFI 49 (120) T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHH T ss_conf 6637884888887630113002103216633830088999999 No 190 >d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]} Probab=25.16 E-value=12 Score=13.69 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC----HHHHHHH Q ss_conf 78999999999999986484121499999984887----7787631 Q T0596 6 DPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVS----LDEIRLY 47 (213) Q Consensus 6 ~~~R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs----~~t~y~y 47 (213) .-+|++|++.- .+. ..|..+|++..|+. ...+|.| T Consensus 10 ~T~RerIi~lL----~~~---~~ta~eia~~l~i~~~~~~k~vyeh 48 (105) T d2gmga1 10 ATRREKIIELL----LEG---DYSPSELARILDMRGKGSKKVILED 48 (105) T ss_dssp HHHHHHHHHHT----TTS---CBCTTHHHHSSCCCSSCCHHHHHHH T ss_pred CCHHHHHHHHH----HCC---CCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 02999999999----829---9999999999653554418899999 No 191 >d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]} Probab=24.38 E-value=6.5 Score=15.75 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=23.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999864841214999999848877787631 Q T0596 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 17 ~~l~~e~G~~~~tv~~IA~~aGvs~~t~y~y 47 (213) +++....=++-+|+.+.|++=|+|...||.+ T Consensus 40 aaVV~av~~Gl~S~~EAcrrY~LS~eEf~~W 70 (93) T d2oa4a1 40 IAVVRGVIYGLITLAEAKQTYGLSDEEFNSW 70 (93) T ss_dssp HHHHHHHHHTTCCHHHHHHTTCSSHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999838577999998839999999999 No 192 >d2g3ba2 a.121.1.1 (A:74-189) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=23.94 E-value=16 Score=12.70 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHH Q ss_conf 5788999999999999875189---99999998744678-588999999999999999997---0678778777899999 Q T0596 79 VASERIHHLIMIWLDALAVQRK---VTRQMIMSKLEFGH-IHIQIPAVMRVSRTVQWVREA---AQRDATFMRRALEEST 151 (213) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 151 (213) ++++++..++...+..-...+. .+..+......... ..............+..++.. .|.-..+..+...... T Consensus 2 s~rdrL~~~i~~~l~~~~~~r~~~~vW~~~~a~A~~dp~~~~~~~~~~~~~~~~l~~ii~~g~~~G~~~~~~D~~~~A~~ 81 (116) T d2g3ba2 2 SARDRLTRSLLGEIQDRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVT 81 (116) T ss_dssp SHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf 88999999999768985002899999999999974156889999999999999999999999855885888899999999 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 999999999987359997758999999999999 Q T0596 152 LTTIYLMTFFFWMRDESENSRHTRQFLKRHLTM 184 (213) Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 184 (213) +..+..+....++.++. .....+..+.+.++. T Consensus 82 L~AliDGl~~~~l~~~~-~~~~ara~l~~~i~~ 113 (116) T d2g3ba2 82 MTALVEGLSGRWLCKEI-STEDARSHLLGAIDV 113 (116) T ss_dssp HHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH T ss_conf 99999999999981789-889999999999998 No 193 >d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]} SCOP: d2ieca1 d2iecb1 Probab=23.87 E-value=12 Score=13.76 Aligned_cols=36 Identities=6% Similarity=-0.092 Sum_probs=22.6 Q ss_pred CCCCHHHHH-HHHHHHCCCHHHHHHHCC-------CHHHHHHHHH Q ss_conf 484121499-999984887778763158-------9889999999 Q T0596 23 TSWEAVRLY-DIAARLAVSLDEIRLYFR-------EKDELIDAWF 59 (213) Q Consensus 23 ~G~~~~tv~-~IA~~aGvs~~t~y~yF~-------sKe~L~~a~~ 59 (213) +=| ++|=+ .-+=+||++-|++||.|- |++.|-.|+- T Consensus 7 ~YF-n~TdrerA~FEaGIklGALyHQFvGtPVs~~sa~slE~AIe 50 (120) T d2i52a1 7 KYF-NCTDIQRAFFEAGIKLGAIFHQYTGIPVNSENASMAEEFIE 50 (120) T ss_dssp GGC-CSCHHHHHHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHH T ss_pred HCC-CCCCHHHHHHHCCCHHCEEEEEEEEECCCHHHHHHHHHHHH T ss_conf 102-68856776534221012035333641228523899999999 No 194 >d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]} Probab=23.44 E-value=16 Score=12.63 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=19.9 Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHH Q ss_conf 98648412149999998488777876 Q T0596 20 AAHTSWEAVRLYDIAARLAVSLDEIR 45 (213) Q Consensus 20 ~~e~G~~~~tv~~IA~~aGvs~~t~y 45 (213) |+=.|....|+.+|++..|||+.-+. T Consensus 31 fGl~~~~~~tl~eI~~~lgiSrERVR 56 (87) T d1ttya_ 31 YGLLDGKPKTLEEVGQYFNVTRERIR 56 (87) T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 27789996889999999598899999 No 195 >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=23.07 E-value=11 Score=13.85 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=29.6 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999986484-1214999999848877787631589889 Q T0596 14 DTAVELAAHTSW-EAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 14 ~AA~~l~~e~G~-~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ..--..|.+..| +......||...|++...|-.+|.++-. T Consensus 14 ~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 54 (60) T d1yz8p1 14 QQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 54 (60) T ss_dssp HHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999769998679999999877985788998598888 No 196 >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Probab=22.99 E-value=17 Score=12.57 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCC----CCHHHHHHHHHHHCCCHHHHHHHCCCHHH Q ss_conf 999999998648----41214999999848877787631589889 Q T0596 13 VDTAVELAAHTS----WEAVRLYDIAARLAVSLDEIRLYFREKDE 53 (213) Q Consensus 13 l~AA~~l~~e~G----~~~~tv~~IA~~aGvs~~t~y~yF~sKe~ 53 (213) ++.--..|.++. .+.-...+||...|++...|..+|.++-. T Consensus 13 ~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~ 57 (73) T d1pufb_ 13 TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 57 (73) T ss_dssp HHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999843788999999999999979399996998899898 No 197 >d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Probab=22.81 E-value=17 Score=12.54 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=22.9 Q ss_pred HHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 98488777876315898899999999999999988 Q T0596 35 ARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKE 69 (213) Q Consensus 35 ~~aGvs~~t~y~yF~sKe~L~~a~~~~~~~~~~~~ 69 (213) |+||..-+.+| +|+++.+|+..+.+-+.+++... T Consensus 38 KAA~~Alsli~-rYp~~~~Lv~~m~~La~EEL~HF 71 (199) T d2itba1 38 KAASTALSLIA-KYNTHLDLINMMSRLAREELVHH 71 (199) T ss_dssp HHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999-78981899999999999999999 No 198 >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Probab=22.34 E-value=17 Score=12.47 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=15.2 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHH Q ss_conf 41214999999848877787631 Q T0596 25 WEAVRLYDIAARLAVSLDEIRLY 47 (213) Q Consensus 25 ~~~~tv~~IA~~aGvs~~t~y~y 47 (213) ..+.|+.+||+..|++++++-+. T Consensus 48 ~~~~t~~~la~~l~~~~~~vsr~ 70 (141) T d1lnwa_ 48 QRGLNLQDLGRQMCRDKALITRK 70 (141) T ss_dssp STTCBHHHHHHHTTCCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHH T ss_conf 79989999999978457379999 No 199 >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Probab=22.34 E-value=17 Score=12.47 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHCCCHHHHHH Q ss_conf 21499999984887778763 Q T0596 27 AVRLYDIAARLAVSLDEIRL 46 (213) Q Consensus 27 ~~tv~~IA~~aGvs~~t~y~ 46 (213) +.|+.+||+..|++++++-+ T Consensus 43 ~~t~~~la~~~~~~~~~vs~ 62 (137) T d2fbha1 43 SPTQRELAQSVGVEGPTLAR 62 (137) T ss_dssp CCBHHHHHHHHTCCHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHH T ss_conf 97699999998978989999 No 200 >d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Probab=22.20 E-value=17 Score=12.45 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.7 Q ss_pred HHHHHHHHHCCCHHHHHHHCCCHHHHH Q ss_conf 499999984887778763158988999 Q T0596 29 RLYDIAARLAVSLDEIRLYFREKDELI 55 (213) Q Consensus 29 tv~~IA~~aGvs~~t~y~yF~sKe~L~ 55 (213) |+..-|++.|++.+++.+.-..-|+-+ T Consensus 17 s~~~AA~~L~isq~avs~~i~~LE~~l 43 (89) T d1ixca1 17 NMAAAAKRLHVSQPPITRQMQALEADL 43 (89) T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 999999985899278899999998637 No 201 >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} Probab=21.56 E-value=18 Score=12.36 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=20.3 Q ss_pred HHHHHHHCCCCHHHHHHHHHHH----CCCHHHHH Q ss_conf 9999986484121499999984----88777876 Q T0596 16 AVELAAHTSWEAVRLYDIAARL----AVSLDEIR 45 (213) Q Consensus 16 A~~l~~e~G~~~~tv~~IA~~a----Gvs~~t~y 45 (213) -+.+++++| .+|+.+|++.. |.+.+|+. T Consensus 12 VM~~lW~~~--~~t~~ei~~~l~~~~~~~~sTv~ 43 (120) T d1okra_ 12 VMNIIWMKK--YASANNIIEEIQMQKDWSPKTIR 43 (120) T ss_dssp HHHHHHHHS--SEEHHHHHHHHHHHCCCCHHHHH T ss_pred HHHHHHCCC--CCCHHHHHHHHHCCCCCCHHHHH T ss_conf 999998589--97899999997521286487699 No 202 >d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]} Probab=21.18 E-value=18 Score=12.30 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=25.8 Q ss_pred CCCCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 9997178-999999999999986484121499999 Q T0596 1 MTINNDP-MRDAIVDTAVELAAHTSWEAVRLYDIA 34 (213) Q Consensus 1 ~t~~~~~-~R~~Il~AA~~l~~e~G~~~~tv~~IA 34 (213) ||.+-+. +-+.+++.|.++|-|.--++++-.+|+ T Consensus 1 mt~~~~~~t~De~id~AYDiFLElA~dNL~paDi~ 35 (107) T d1nnva_ 1 MTTEIKKLDPDTAIDIAYDIFLEMAGENLDPADIL 35 (107) T ss_dssp CCSSCCCCCHHHHHHHHHHHHHHHCSTTSCHHHHH T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 94022039988999999999998605429999999 No 203 >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Probab=21.06 E-value=18 Score=12.31 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.0 Q ss_pred CCCHHHHHHHCCCH Q ss_conf 88777876315898 Q T0596 38 AVSLDEIRLYFREK 51 (213) Q Consensus 38 Gvs~~t~y~yF~sK 51 (213) ||+..-++.+|.++ T Consensus 56 ~vt~~~V~~WF~NR 69 (78) T d1lfba_ 56 LVTEVRVYNWFANR 69 (78) T ss_dssp CCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 88999999999999 No 204 >d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=21.02 E-value=18 Score=12.28 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=25.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCH-HHHHHHCCCHH Q ss_conf 99999999864841214999999848877-78763158988 Q T0596 13 VDTAVELAAHTSWEAVRLYDIAARLAVSL-DEIRLYFREKD 52 (213) Q Consensus 13 l~AA~~l~~e~G~~~~tv~~IA~~aGvs~-~t~y~yF~sKe 52 (213) ++.|..++.... .+|.+||..+|.+- ..|++.|...- T Consensus 3 l~~A~~lL~~t~---~~i~~IA~~~Gf~~~~~F~r~Fk~~~ 40 (65) T d1d5ya2 3 LSKSAVALRLTA---RPILDIALQYRFDSQQTFTRAFKKQF 40 (65) T ss_dssp HHHHHHHHHHCC---CCHHHHHHHTTCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCC---CCHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 999999988689---99999999978998799999999888 No 205 >d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]} Probab=20.58 E-value=18 Score=12.22 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=12.8 Q ss_pred CCCHHHHHHHCCCHHHHHHHHHHH Q ss_conf 887778763158988999999999 Q T0596 38 AVSLDEIRLYFREKDELIDAWFDR 61 (213) Q Consensus 38 Gvs~~t~y~yF~sKe~L~~a~~~~ 61 (213) -+.++.+-+|-|+-.+++..++.. T Consensus 12 e~~~~didh~~pta~amLn~lLAn 35 (171) T d1zs3a1 12 ELDKAEIDHHKPTAGAMLGHVLSN 35 (171) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 971514431206799999789998 No 206 >d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Probab=20.43 E-value=19 Score=12.19 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHH Q ss_conf 99999999999986484121499999984887778 Q T0596 9 RDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDE 43 (213) Q Consensus 9 R~~Il~AA~~l~~e~G~~~~tv~~IA~~aGvs~~t 43 (213) ++.|++.-+..+.+ -|..+++..+|+..|++..- T Consensus 13 ~~~i~Ehni~~is~-~Y~~Isl~~la~~l~l~~~e 46 (84) T d1ufma_ 13 DRAVIEHNLLSASK-LYNNITFEELGALLEIPAAK 46 (84) T ss_dssp CHHHHHHHHHHHHH-SCSEEEHHHHHHHTTSCHHH T ss_pred HHHHHHHHHHHHHH-HHCEEEHHHHHHHHCCCHHH T ss_conf 99999998999988-30256699999997879999 No 207 >d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]} Probab=20.21 E-value=19 Score=12.16 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=21.0 Q ss_pred CHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHC--CCHHHHHHHC Q ss_conf 71789999999999999864-841214999999848--8777876315 Q T0596 4 NNDPMRDAIVDTAVELAAHT-SWEAVRLYDIAARLA--VSLDEIRLYF 48 (213) Q Consensus 4 ~~~~~R~~Il~AA~~l~~e~-G~~~~tv~~IA~~aG--vs~~t~y~yF 48 (213) +.+..|..|+++-.. .++ -+.+-.+-+..+..| |+.+|+|+.. T Consensus 13 R~T~qR~~Il~~L~~--~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L 58 (134) T d1mzba_ 13 KVTLPRVKILQMLDS--AEQRHMSAEDVYKALMEAGEDVGLATVYRVL 58 (134) T ss_dssp CCCHHHHHHHHHHHC--C-CCSBCHHHHHHHHHHTTCCCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 979899999999984--8999999999999999738884479999999 Done!