Query T0598 3NJC, Bacillus subtilis, 161 residues Match_columns 161 No_of_seqs 58 out of 60 Neff 3.9 Searched_HMMs 22458 Date Mon Jul 5 08:58:02 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0598.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0598.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2oso_A Hypothetical protein MJ 99.7 2.4E-17 1.1E-21 123.0 8.4 126 20-147 26-157 (163) 2 2z9e_A Cellulose synthase oper 46.6 15 0.00068 17.0 3.8 80 41-124 39-127 (167) 3 2hqv_A AGR_C_4470P; NESG, ATR9 30.2 12 0.00053 17.6 0.8 59 37-98 46-104 (195) 4 1zxo_A Conserved hypothetical 25.4 25 0.0011 15.7 1.7 19 38-58 138-156 (291) 5 3iab_A Ribonucleases P/MRP pro 19.1 35 0.0016 14.8 1.5 31 20-50 14-46 (158) 6 1xr0_B FGFR signalling adaptor 18.7 15 0.00069 17.0 -0.4 34 77-114 37-70 (129) 7 2i5u_A DNAD domain protein; st 16.9 43 0.0019 14.3 1.5 18 64-81 2-19 (83) 8 2jpj_A Bacteriocin lactococcin 16.5 35 0.0015 14.9 0.9 14 44-57 11-24 (39) 9 3gud_A NECK appendage protein; 14.8 25 0.0011 15.7 -0.2 15 110-124 42-56 (129) 10 2ys5_A Fibroblast growth facto 14.5 24 0.0011 15.8 -0.3 34 77-114 44-77 (146) No 1 >2oso_A Hypothetical protein MJ1460; 1592102, methanococcus jannaschii protein MJ_1460, structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: d.278.1.3 PDB: 2osd_A* Probab=99.71 E-value=2.4e-17 Score=123.01 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=103.0 Q ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEC----CCEEEEEECCH Q ss_conf 03105789999986536640476641345775788753585564468999986068713675314----54268887385 Q T0598 20 IEMNAYAYGLIREIVLPDMLGQDYSSMMYWAGKHLARKFPLESWEEFPAFFEEAGWGTLTNVSAK----KQELEFELEGP 95 (161) Q Consensus 20 ~~~~~Fg~~LlRd~lLP~lLG~d~~~ILYWAGK~LARkfPl~s~edl~~FF~~AgwG~Lsl~kek----~~e~~feLsG~ 95 (161) -.++.+.+.|+|..+|+.++|.+.+.|||||||++||+|+..+++|++.||+++|||.|++.+.. .....+..+++ T Consensus 26 ~~ip~~~Frl~r~~~l~~i~~~~~~~ilY~~Gk~~Gr~l~~~~~eel~~ff~~~g~G~L~I~s~~~~~~~~~i~i~~~~~ 105 (163) T 2oso_A 26 KKIPMPYFGLFALVIFDKVKELGSETSLYEIGEEFGKMLSPKNIEELKKIFKLMNFGDLEIDENKILLKNPPYKIKLSNP 105 (163) T ss_dssp CCCCHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHCCSSHHHHHHHHHHHTCCEEECCHHHHHHSCSCEEEEEESC T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCC T ss_conf 76889999999999999855877069999999999997216219999999997696169887413545771499998078 Q ss_pred HHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCEEEEEEEEC--CCCCEEEEEEEE Q ss_conf 7898975048984442123799999988183001200011--356768999987 Q T0598 96 IISNRLKHQKEPCFQLEAGFIAEQIQLMNDQIAESYEQVK--KRADKVVLTVKW 147 (161) Q Consensus 96 ~v~~Rl~~~~~~~F~LEAGFlAeqiq~q~~~vtEa~~~~~--kk~~~V~i~V~~ 147 (161) +.... . ...|--.++|||||..++...|.-..+.+..= .-.....|.|+. T Consensus 106 ~~~~~-~-~~~p~C~~~~G~lag~~~~~~~~~~~v~E~~C~a~G~~~C~F~~~~ 157 (163) T 2oso_A 106 PYQWV-S-KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKE 157 (163) T ss_dssp SCTTC-C-CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEE T ss_pred HHHCC-C-CCCCEEEEEHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEE T ss_conf 66526-6-8997364128999999999959966999938781899815999998 No 2 >2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 2z9f_A Probab=46.56 E-value=15 Score=16.99 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=46.8 Q ss_pred CCCCCHHHHHHHHHHHHCCCCC---HHHHH----HHHHHCCCC--CEEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEE Q ss_conf 7664134577578875358556---44689----999860687--13675314542688873857898975048984442 Q T0598 41 QDYSSMMYWAGKHLARKFPLES---WEEFP----AFFEEAGWG--TLTNVSAKKQELEFELEGPIISNRLKHQKEPCFQL 111 (161) Q Consensus 41 ~d~~~ILYWAGK~LARkfPl~s---~edl~----~FF~~AgwG--~Lsl~kek~~e~~feLsG~~v~~Rl~~~~~~~F~L 111 (161) +|....|-=.|.++|+.|||.. .+|+. .-....+|| +|++..+...-.+.-..-|.+. ...++.-.- T Consensus 39 eelr~fLr~mG~rlA~r~PLP~~~Tv~dLE~~IN~vLa~f~WG~V~ldL~~~d~~L~I~H~AlP~~~----a~ge~~~~w 114 (167) T 2z9e_A 39 EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIGWGTVTLELLSEDQSLRIVHENLPQVG----SAGEPSGTW 114 (167) T ss_dssp HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHTCCEEEEEECTTTSEEEEEEECCCCCS----SCTTTTTCT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCC----CCCHHHHHH T ss_conf 9999999999999998579987675999999999999978986587541577780689861587664----333688999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1237999999881 Q T0598 112 EAGFIAEQIQLMN 124 (161) Q Consensus 112 EAGFlAeqiq~q~ 124 (161) =+.||....+.|. T Consensus 115 ~~A~LEGlY~~WL 127 (167) T 2z9e_A 115 LAPVLEGLYGRWV 127 (167) T ss_dssp THHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999988999999 No 3 >2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: e.62.1.2 Probab=30.21 E-value=12 Score=17.63 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=47.8 Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCHHHH Q ss_conf 64047664134577578875358556446899998606871367531454268887385789 Q T0598 37 DMLGQDYSSMMYWAGKHLARKFPLESWEEFPAFFEEAGWGTLTNVSAKKQELEFELEGPIIS 98 (161) Q Consensus 37 ~lLG~d~~~ILYWAGK~LARkfPl~s~edl~~FF~~AgwG~Lsl~kek~~e~~feLsG~~v~ 98 (161) .-||=....++-..+...||+.|-+.++++.. .-++||.+..+-.+. ..++|.+|++-. T Consensus 46 ~~lgVSe~evl~a~p~e~a~~l~~d~~~~lL~--~l~~~G~Vm~iv~N~-~~V~E~~G~~~~ 104 (195) T 2hqv_A 46 AKAEVAPAEILAILPQGAAVSAPADRFDAIWN--EMRGWGEILMIVQTG-DIVLEVPGHLPE 104 (195) T ss_dssp CCSSSCHHHHHTTSCTTSEEEEEGGGHHHHHH--HHTTSCSEEEEEECS-SCEEEEEECCCC T ss_pred HHHCCCHHHHHHHCCHHHEEECCHHHHHHHHH--HHHHCCCEEEEECCC-CEEEEEECCCCC T ss_conf 98497999999847986789858889999999--887549379998288-669999616899 No 4 >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Probab=25.39 E-value=25 Score=15.75 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=12.6 Q ss_pred HCCCCCCCHHHHHHHHHHHHC Q ss_conf 404766413457757887535 Q T0598 38 MLGQDYSSMMYWAGKHLARKF 58 (161) Q Consensus 38 lLG~d~~~ILYWAGK~LARkf 58 (161) +|||+-+. ||.||+.-|.+ T Consensus 138 ~lGDeGSG--~~iG~~al~~~ 156 (291) T 1zxo_A 138 ILGDEGSG--AVLGKLLVGDI 156 (291) T ss_dssp TTSCCSSH--HHHHHHHHHHG T ss_pred CCCCCCCH--HHHHHHHHHHH T ss_conf 78997647--79999999999 No 5 >3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae} Probab=19.13 E-value=35 Score=14.82 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=22.9 Q ss_pred HCCCHH--HHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 031057--8999998653664047664134577 Q T0598 20 IEMNAY--AYGLIREIVLPDMLGQDYSSMMYWA 50 (161) Q Consensus 20 ~~~~~F--g~~LlRd~lLP~lLG~d~~~ILYWA 50 (161) +..|.+ -...++|.+||.+||......-+=. T Consensus 14 ld~s~~~eC~~yI~n~ilp~ll~~~n~~~~i~~ 46 (158) T 3iab_A 14 LDISSSTQCLRFLKETVIPSLANNGNNSTSIQY 46 (158) T ss_dssp CCTTCHHHHHHHHHHTTTTTTCCCSSSSEEEEE T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 448875889999998746998708897506888 No 6 >1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2 Probab=18.69 E-value=15 Score=16.96 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=25.1 Q ss_pred CEEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEHHH Q ss_conf 13675314542688873857898975048984442123 Q T0598 77 TLTNVSAKKQELEFELEGPIISNRLKHQKEPCFQLEAG 114 (161) Q Consensus 77 ~Lsl~kek~~e~~feLsG~~v~~Rl~~~~~~~F~LEAG 114 (161) .|.+...+.....|.|.. -.|... ....|.+||| T Consensus 37 ~l~l~~~~~~~v~Wpl~~---lRRyG~-~~~~F~fE~G 70 (129) T 1xr0_B 37 ELILYTRKRDSVKWHYLC---LRRYGY-DSNLFSFESG 70 (129) T ss_dssp CEEEEETTTEEEEECSTT---EEEEEE-CSSEEEEEEC T ss_pred EEEEECCCCCEEEEEHHH---EEEECC-CCCEEEEECC T ss_conf 789973899748958255---634035-7987999788 No 7 >2i5u_A DNAD domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.50A {Enterococcus faecalis V583} SCOP: a.275.1.1 Probab=16.94 E-value=43 Score=14.31 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=13.4 Q ss_pred HHHHHHHHHCCCCCEEEE Q ss_conf 468999986068713675 Q T0598 64 EEFPAFFEEAGWGTLTNV 81 (161) Q Consensus 64 edl~~FF~~AgwG~Lsl~ 81 (161) ..+..||++-|||.|+.. T Consensus 2 ~~i~~~ye~n~fg~lsp~ 19 (83) T 2i5u_A 2 NAIRSIWENNGFGLMSSK 19 (83) T ss_dssp HHHHHHHHTTTSCSCCHH T ss_pred CHHHHHHHHCCCCCCCHH T ss_conf 169999998488888899 No 8 >2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A Probab=16.53 E-value=35 Score=14.87 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=10.1 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 41345775788753 Q T0598 44 SSMMYWAGKHLARK 57 (161) Q Consensus 44 ~~ILYWAGK~LARk 57 (161) ...-||.||-|..- T Consensus 11 g~~aywv~k~lgnm 24 (39) T 2jpj_A 11 GRVAYWVGKALGNL 24 (39) T ss_dssp HHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHCCH T ss_conf 18999999873145 No 9 >3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1} Probab=14.85 E-value=25 Score=15.73 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=11.6 Q ss_pred EEHHHHHHHHHHHHH Q ss_conf 421237999999881 Q T0598 110 QLEAGFIAEQIQLMN 124 (161) Q Consensus 110 ~LEAGFlAeqiq~q~ 124 (161) ....|||||.++... T Consensus 42 ~~~~G~iAQev~~v~ 56 (129) T 3gud_A 42 RYHFGVIAQQIVKVF 56 (129) T ss_dssp CCEEECCHHHHHHHH T ss_pred CCEECCCHHHHHHHH T ss_conf 513141689998741 No 10 >2ys5_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=14.48 E-value=24 Score=15.78 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=25.0 Q ss_pred CEEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEHHH Q ss_conf 13675314542688873857898975048984442123 Q T0598 77 TLTNVSAKKQELEFELEGPIISNRLKHQKEPCFQLEAG 114 (161) Q Consensus 77 ~Lsl~kek~~e~~feLsG~~v~~Rl~~~~~~~F~LEAG 114 (161) .|.+...+...+.|.|.. -.|... +...|.+||| T Consensus 44 ~l~L~~~~~~~v~Wpl~~---lRRyG~-~~~~F~fE~G 77 (146) T 2ys5_A 44 ELVLHLHRREAVRWPYLC---LRRYGY-DSNLFSFESG 77 (146) T ss_dssp CEEEECSSSCCEEECTTT---CCEEBC-BTTBEEEEEC T ss_pred EEEEECCCCCEEEEEHHH---HHHHCC-CCCEEEEECC T ss_conf 899964899637834578---131145-6987888467 Done!