Query T0598 3NJC, Bacillus subtilis, 161 residues Match_columns 161 No_of_seqs 58 out of 60 Neff 3.9 Searched_HMMs 15564 Date Mon Jul 5 08:59:21 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0598.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0598.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2osoa1 d.278.1.3 (A:5-156) Hy 99.8 1E-20 6.7E-25 142.0 8.8 125 20-146 21-151 (152) 2 d2i5ua1 a.275.1.1 (A:2-75) Unc 23.4 16 0.001 15.9 1.3 15 66-80 1-15 (74) 3 d1zxoa2 c.55.1.5 (A:107-280) H 22.1 22 0.0014 15.1 1.7 19 38-58 32-50 (174) 4 d1rlza_ c.31.1.1 (A:) Deoxyhyp 20.1 31 0.002 14.3 3.0 46 21-72 190-242 (361) 5 d1xr0b_ b.55.1.2 (B:) FGFR sub 18.7 11 0.00069 17.0 -0.4 35 76-114 36-70 (129) 6 d1sxje1 a.80.1.1 (E:256-354) R 17.3 17 0.0011 15.8 0.3 23 98-121 74-96 (99) 7 d1dhsa_ c.31.1.1 (A:) Deoxyhyp 13.6 44 0.0028 13.3 2.5 46 22-73 191-243 (361) 8 d1h3da1 c.94.1.1 (A:5-224) ATP 12.0 25 0.0016 14.8 -0.0 36 42-82 111-146 (220) 9 d1edqa1 b.1.18.2 (A:24-132) Ch 10.6 39 0.0025 13.6 0.6 23 128-150 24-46 (109) 10 d1yb3a1 d.296.1.2 (A:2-167) Hy 9.0 57 0.0037 12.6 1.0 24 92-115 119-142 (166) No 1 >d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]} Probab=99.83 E-value=1e-20 Score=142.04 Aligned_cols=125 Identities=19% Similarity=0.251 Sum_probs=105.3 Q ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEE----CCCEEEEEECCH Q ss_conf 0310578999998653664047664134577578875358556446899998606871367531----454268887385 Q T0598 20 IEMNAYAYGLIREIVLPDMLGQDYSSMMYWAGKHLARKFPLESWEEFPAFFEEAGWGTLTNVSA----KKQELEFELEGP 95 (161) Q Consensus 20 ~~~~~Fg~~LlRd~lLP~lLG~d~~~ILYWAGK~LARkfPl~s~edl~~FF~~AgwG~Lsl~ke----k~~e~~feLsG~ 95 (161) ..+|.+.+.|+|..+++.+.|++++.|||||||++||+||..+.++++.||.++|||.|++.+. .+....++++++ T Consensus 21 ~~ip~~~f~l~~~~l~d~l~~~~~~~iLY~aGk~lGr~~~~k~~eel~~ff~~~g~G~L~I~~~~~~~~~~~~~~e~~~~ 100 (152) T d2osoa1 21 KKIPMPYFGLFALVIFDKVKELGSETSLYEIGEEFGKMLSPKNIEELKKIFKLMNFGDLEIDENKILLKNPPYKIKLSNP 100 (152) T ss_dssp CCCCHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHCCSSHHHHHHHHHHHTCCEEECCHHHHHHSCSCEEEEEESC T ss_pred HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCC T ss_conf 51879999999999997726655089999999999999888799999999987698539998524112341699998068 Q ss_pred HHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCEEEEEEEEC--CCCCEEEEEEE Q ss_conf 7898975048984442123799999988183001200011--35676899998 Q T0598 96 IISNRLKHQKEPCFQLEAGFIAEQIQLMNDQIAESYEQVK--KRADKVVLTVK 146 (161) Q Consensus 96 ~v~~Rl~~~~~~~F~LEAGFlAeqiq~q~~~vtEa~~~~~--kk~~~V~i~V~ 146 (161) +...+.. .+|...++|||||..++...|.-..+.+..- .-....+|.|+ T Consensus 101 ~~~~g~~--~~pvC~~~~G~lag~~~~~~g~~~~v~E~~C~a~G~~~C~F~v~ 151 (152) T d2osoa1 101 PYQWVSK--EEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVK 151 (152) T ss_dssp SCTTCCC--SSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEE T ss_pred HHHHCCC--CCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCEEEEEE T ss_conf 6661789--99863020999999999993996599972650279982599972 No 2 >d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]} Probab=23.43 E-value=16 Score=15.90 Aligned_cols=15 Identities=20% Similarity=0.683 Sum_probs=10.3 Q ss_pred HHHHHHHCCCCCEEE Q ss_conf 899998606871367 Q T0598 66 FPAFFEEAGWGTLTN 80 (161) Q Consensus 66 l~~FF~~AgwG~Lsl 80 (161) +..||++-|||.||. T Consensus 1 i~~~yE~ngfG~lsp 15 (74) T d2i5ua1 1 IRSIWENNGFGLMSS 15 (74) T ss_dssp HHHHHHTTTSCSCCH T ss_pred CHHHHHHCCCCCCCH T ss_conf 900887678877589 No 3 >d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=22.07 E-value=22 Score=15.14 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=10.2 Q ss_pred HCCCCCCCHHHHHHHHHHHHC Q ss_conf 404766413457757887535 Q T0598 38 MLGQDYSSMMYWAGKHLARKF 58 (161) Q Consensus 38 lLG~d~~~ILYWAGK~LARkf 58 (161) +|||+-+. ||.||+.-|.+ T Consensus 32 ~lGDeGSg--~~iG~~al~~~ 50 (174) T d1zxoa2 32 ILGDEGSG--AVLGKLLVGDI 50 (174) T ss_dssp TTSCCSSH--HHHHHHHHHHG T ss_pred CCCCCCHH--HHHHHHHHHHH T ss_conf 67998408--99999999999 No 4 >d1rlza_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1dhsa_ d1rqda_ d1roza_ Probab=20.05 E-value=31 Score=14.26 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=24.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-------CCHHHHHHHHHH Q ss_conf 3105789999986536640476641345775788753585-------564468999986 Q T0598 21 EMNAYAYGLIREIVLPDMLGQDYSSMMYWAGKHLARKFPL-------ESWEEFPAFFEE 72 (161) Q Consensus 21 ~~~~Fg~~LlRd~lLP~lLG~d~~~ILYWAGK~LARkfPl-------~s~edl~~FF~~ 72 (161) ..+.+..++++.... . + ++.++|||||=|+ .-|+ .++-+.+.||.+ T Consensus 190 ~~~~s~~e~~~~lG~-~-i-~~e~Sil~~A~k~---~VPIf~Pa~~DssiG~~l~~~~~ 242 (361) T d1rlza_ 190 GVKWTPSKMIARLGK-E-I-NNPESVYYWAQKN---HIPVFSPALTDGSLGDMIFFHSY 242 (361) T ss_dssp CCCCCHHHHHHHHHH-H-H-CCTTCHHHHHHHT---TCCEECTTTTSSHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH-H-C-CCCCCCHHHHHHC---CCCEEECCCCHHHHHHHHHHHHH T ss_conf 983248999999987-4-0-9986000654674---88589868526779999999985 No 5 >d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [TaxId: 9606]} Probab=18.73 E-value=11 Score=16.97 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=25.6 Q ss_pred CCEEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEHHH Q ss_conf 713675314542688873857898975048984442123 Q T0598 76 GTLTNVSAKKQELEFELEGPIISNRLKHQKEPCFQLEAG 114 (161) Q Consensus 76 G~Lsl~kek~~e~~feLsG~~v~~Rl~~~~~~~F~LEAG 114 (161) -.|.+...+.....|.|.. -.|... ....|.+||| T Consensus 36 ~~l~L~~~~~~~v~Wpl~~---lRRyG~-~~~~F~fE~G 70 (129) T d1xr0b_ 36 TELILYTRKRDSVKWHYLC---LRRYGY-DSNLFSFESG 70 (129) T ss_dssp SCEEEEETTTEEEEECSTT---EEEEEE-CSSEEEEEEC T ss_pred CEEEEECCCCCEEEEEHHH---EEEECC-CCCEEEEECC T ss_conf 2789973899728968256---634035-7987999688 No 6 >d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=17.32 E-value=17 Score=15.78 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.8 Q ss_pred HHHHHCCCCCCEEEHHHHHHHHHH Q ss_conf 989750489844421237999999 Q T0598 98 SNRLKHQKEPCFQLEAGFIAEQIQ 121 (161) Q Consensus 98 ~~Rl~~~~~~~F~LEAGFlAeqiq 121 (161) +.|+.....+-|-||| |+|+-.. T Consensus 74 E~Rl~~GsK~IfHLEa-FvAkfM~ 96 (99) T d1sxje1 74 DERLSLGNKAIFHLEG-FIAKVMC 96 (99) T ss_dssp HHHHHTCSCHHHHHHH-HHHHHHH T ss_pred HHHHHCCCCHHHHHHH-HHHHHHH T ss_conf 9998779908799999-9999985 No 7 >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} Probab=13.60 E-value=44 Score=13.30 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=23.7 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-------CCHHHHHHHHHHC Q ss_conf 105789999986536640476641345775788753585-------5644689999860 Q T0598 22 MNAYAYGLIREIVLPDMLGQDYSSMMYWAGKHLARKFPL-------ESWEEFPAFFEEA 73 (161) Q Consensus 22 ~~~Fg~~LlRd~lLP~lLG~d~~~ILYWAGK~LARkfPl-------~s~edl~~FF~~A 73 (161) .+.+..++++... ..| ++.++|||||=|+ .-|+ .|+-+...|+... T Consensus 191 ~~~~~~e~i~~lg-~~i--~~~~Sil~~A~~~---~vPVf~Pa~~DssiG~~l~~~~~~ 243 (361) T d1dhsa_ 191 VKWTPSKMIARLG-KEI--NNPESVYYWAQKN---HIPVFSPALTDGSLGDMIFFHSYK 243 (361) T ss_dssp CCCCHHHHHHHHH-HHH--CCTTCHHHHHHHT---TCCEECTTTTSSHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH-HCC--CCCCHHHHHHHHH---CCCEECCCCCHHHHHHHHHHHHHC T ss_conf 7646499999997-426--8952499999982---997654776516699999999961 No 8 >d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]} Probab=11.96 E-value=25 Score=14.75 Aligned_cols=36 Identities=14% Similarity=0.378 Sum_probs=23.7 Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEE Q ss_conf 66413457757887535855644689999860687136753 Q T0598 42 DYSSMMYWAGKHLARKFPLESWEEFPAFFEEAGWGTLTNVS 82 (161) Q Consensus 42 d~~~ILYWAGK~LARkfPl~s~edl~~FF~~AgwG~Lsl~k 82 (161) +.....-+.||++|.|||--+ -.||.+.|. +-++++ T Consensus 111 ~~~~~~~~~~~RIATkYp~it----~~y~~~~gi-~~~ii~ 146 (220) T d1h3da1 111 AWDGPLSLNGKRIATSYPHLL----KRYLDQKGI-SFKSCL 146 (220) T ss_dssp CCCCGGGGTTCEEEESCHHHH----HHHHHHHTC-CCEEEE T ss_pred CCCCHHHCCCCEEHHHHHHHH----HHHHHHCCC-CCEEEE T ss_conf 445866717989801005999----999996566-402430 No 9 >d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N {Serratia marcescens [TaxId: 615]} Probab=10.62 E-value=39 Score=13.65 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=15.8 Q ss_pred EEEEEEECCCCCEEEEEEEECCC Q ss_conf 01200011356768999987787 Q T0598 128 AESYEQVKKRADKVVLTVKWDMK 150 (161) Q Consensus 128 tEa~~~~~kk~~~V~i~V~~D~k 150 (161) +-||...-|+...|.|+|.|+.= T Consensus 24 at~Y~~lV~~~~~v~v~VswN~W 46 (109) T d1edqa1 24 ATAYNNLVKVKNAADVSVSWNLW 46 (109) T ss_dssp CCSHHHHEEECSSEEEEEEEECC T ss_pred HHHHHHHEEECCCEEEEEEEEEE T ss_conf 11223206851450799999876 No 10 >d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]} Probab=9.05 E-value=57 Score=12.63 Aligned_cols=24 Identities=17% Similarity=0.384 Sum_probs=0.0 Q ss_pred ECCHHHHHHHHCCCCCCEEEHHHH Q ss_conf 738578989750489844421237 Q T0598 92 LEGPIISNRLKHQKEPCFQLEAGF 115 (161) Q Consensus 92 LsG~~v~~Rl~~~~~~~F~LEAGF 115 (161) +++.-|-.|+..+++..++.|++| T Consensus 119 ~~~~ev~~~I~~SdE~~i~FE~~~ 142 (166) T d1yb3a1 119 ISGDEVWDRIVNSDEEMINFEVDL 142 (166) T ss_dssp CCHHHHHHHHHTSSCSEEEEEEEC T ss_pred CCHHHHHHHHHHCHHHHEEEEECC T ss_conf 998999999874746717755147 Done!