Query T0600 3NJA, Chromobacterium violaceum ATCC 12472, 125 residues
Match_columns 125
No_of_seqs 125 out of 10427
Neff 10.3
Searched_HMMs 15564
Date Mon Jul 5 09:07:36 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0600.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0600.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p97a_ d.110.3.7 (A:) Hypoxia 99.8 5.2E-19 3.3E-23 119.3 6.3 107 17-125 6-113 (114)
2 d1bywa_ d.110.3.6 (A:) Erg pot 99.7 8.8E-17 5.7E-21 107.3 7.7 103 21-123 5-110 (110)
3 d1n9la_ d.110.3.6 (A:) Putativ 99.6 6.7E-16 4.3E-20 102.6 9.0 104 17-122 3-109 (109)
4 d1ew0a_ d.110.3.2 (A:) Histidi 99.6 2.3E-15 1.4E-19 99.8 7.2 115 3-121 12-130 (130)
5 d1jnua_ d.110.3.6 (A:) Photore 99.5 1.2E-14 7.8E-19 95.9 6.1 94 25-120 11-104 (104)
6 d1xj3a1 d.110.3.2 (A:154-259) 99.3 1.2E-12 7.8E-17 85.2 7.5 102 18-123 1-106 (106)
7 d1v9ya_ d.110.3.2 (A:) Direct 99.3 5.5E-12 3.5E-16 81.7 8.0 108 8-119 2-113 (113)
8 d1oj5a_ d.110.3.8 (A:) PAS dom 99.2 5.2E-12 3.3E-16 81.8 5.4 97 20-118 5-105 (109)
9 d1nwza_ d.110.3.1 (A:) Photoac 98.9 1.1E-09 6.8E-14 69.5 4.9 97 12-113 22-120 (125)
10 d1nwza_ d.110.3.1 (A:) Photoac 98.9 9E-10 5.8E-14 69.8 4.2 106 9-120 19-125 (125)
11 d1ll8a_ d.110.3.5 (A:) N-termi 98.9 7.8E-10 5E-14 70.2 3.8 103 15-121 6-113 (114)
12 d1mzua_ d.110.3.1 (A:) PYP dom 98.6 9.6E-09 6.2E-13 64.3 2.4 100 9-113 5-106 (110)
13 d2oola2 d.110.3.9 (A:26-139) S 92.7 0.05 3.2E-06 28.4 3.4 71 19-92 19-90 (114)
14 d1p0za_ d.110.6.1 (A:) Sensor 39.7 12 0.00076 15.7 4.0 89 6-122 38-127 (131)
15 d1p0za_ d.110.6.1 (A:) Sensor 32.3 16 0.001 15.0 4.0 88 7-122 39-127 (131)
16 d2veaa3 d.110.3.9 (A:4-130) Ph 31.9 5.5 0.00036 17.5 0.2 65 3-69 3-77 (127)
17 d2fp7b1 b.47.1.3 (B:19-170) NS 30.0 13 0.00083 15.5 1.8 21 97-117 115-135 (152)
18 d2o9ca2 d.110.3.9 (A:4-130) Ba 28.4 18 0.0012 14.7 4.2 72 20-98 38-112 (127)
19 d2fomb1 b.47.1.3 (B:18-167) NS 23.2 17 0.0011 14.9 1.3 19 98-116 117-135 (150)
20 d3by8a1 d.110.6.1 (A:46-178) F 21.4 25 0.0016 13.9 3.6 88 6-122 38-126 (133)
21 d1wyka_ b.47.1.3 (A:) Viral ca 20.9 26 0.0017 13.9 2.5 17 98-114 102-118 (152)
No 1
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75 E-value=5.2e-19 Score=119.27 Aligned_cols=107 Identities=9% Similarity=0.055 Sum_probs=98.5
Q ss_pred CCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 98189986489989981689874113512245876689998875103789999999987504563257860443333222
Q T0600 17 GIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVREL 96 (125)
Q Consensus 17 ~~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~ 96 (125)
++.++..|++++.+|+|+++++++|++++++.+. .+.+++||+|...+.+.+..++.++.....++++++++|+.+|+
T Consensus 6 ~~fi~r~~~dG~i~~~N~~~~~~~G~~~~el~g~--~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv 83 (114)
T d1p97a_ 6 KTFLSRHSMDMKFTYCDDRITELIGYHPEELLGR--SAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWL 83 (114)
T ss_dssp EEEEEEECTTTSCSEECTTHHHHTSSCHHHHTTS--CHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEE
T ss_pred CEEEEEECCCCCEEEECHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCEEEEEECCCCCCEEECCEEEEEECCCCEEE
T ss_conf 7799999799959999879997749971305520--00000000124311001000011111000110000004765179
Q ss_pred CCCCEEEECC-CCCEEEEEEEEEECHHHCC
Q ss_conf 3550056889-9968999888873211249
Q T0600 97 LERNHIQRQA-SGQVDHLWGTVIDMTEHKQ 125 (125)
Q Consensus 97 ~~~~~~~~d~-~g~~~~~vG~~~DITerK~ 125 (125)
+++++|++|+ +|+|.+++|+..||||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 84 ETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEEEECCHHHC
T ss_conf 999889996899989999999998972423
No 2
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.66 E-value=8.8e-17 Score=107.35 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=87.3
Q ss_pred EEEE---CCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 9986---4899899816898741135122458766899988751037899999999875045632578604433332223
Q T0600 21 WVLH---MESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELL 97 (125)
Q Consensus 21 w~~d---~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~ 97 (125)
+..| .+..++|+|+++++|+|++.+++.+....+.-..+|+........+..++..+..+..+++.++++|+.+|+.
T Consensus 5 ~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w~~ 84 (110)
T d1bywa_ 5 IIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCL 84 (110)
T ss_dssp EEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCCCCCCCEEEHEECCCCCCCCHHHCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 99759899998999948999985998889533674311210100000000010000001211111000220132201123
Q ss_pred CCCEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 55005688999689998888732112
Q T0600 98 ERNHIQRQASGQVDHLWGTVIDMTEH 123 (125)
Q Consensus 98 ~~~~~~~d~~g~~~~~vG~~~DITer 123 (125)
++++|++|++|++++++++++|||||
T Consensus 85 ~~~~pi~d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 85 VDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 36778998999999999999978899
No 3
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.63 E-value=6.7e-16 Score=102.64 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=89.5
Q ss_pred CCEEEEEE---CCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 98189986---489989981689874113512245876689998875103789999999987504563257860443333
Q T0600 17 GIGSWVLH---MESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQV 93 (125)
Q Consensus 17 ~~g~w~~d---~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~ 93 (125)
+.++...| +++.++|+|+++++++||+.+++.+... ..+.+++......+.+...++.+..+..|++++++||+.
T Consensus 3 ~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~--~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~ 80 (109)
T d1n9la_ 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNC--RFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP 80 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCG--GGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCE
T ss_pred CCEEEEEECCCCCCEEEEECHHHHHHHCCCHHHHCCCCC--EEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCEE
T ss_conf 656999959899896999958999988869999858730--031135578778422345765398503127887068839
Q ss_pred CCCCCCCEEEECCCCCEEEEEEEEEECHH
Q ss_conf 22235500568899968999888873211
Q T0600 94 RELLERNHIQRQASGQVDHLWGTVIDMTE 122 (125)
Q Consensus 94 ~w~~~~~~~~~d~~g~~~~~vG~~~DITe 122 (125)
+|++++..|++|++|++.+++|++.|||.
T Consensus 81 ~w~~~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 81 FWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 99998998899999999999999997799
No 4
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.57 E-value=2.3e-15 Score=99.82 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 68899999999861981899864899899816898741135122458766899988751037899999999875045---
Q T0600 3 AMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRP--- 79 (125)
Q Consensus 3 a~SE~~l~~~~~~a~~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 79 (125)
..||++|+.++++++.|++..|.+++.+++|+++++|+|++++++.+.. +..++++.+.......+...+..+..
T Consensus 12 ~~~e~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (130)
T d1ew0a_ 12 RARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQN--LRILMPEPYRHEHDGYLQRYMATGEKRII 89 (130)
T ss_dssp HHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTTGGGHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHHHCCCHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999971977299990896499878887775169988962875--22333310267788999999971887544
Q ss_pred -CCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECH
Q ss_conf -632578604433332223550056889996899988887321
Q T0600 80 -FDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMT 121 (125)
Q Consensus 80 -~~~e~r~~~~~g~~~w~~~~~~~~~d~~g~~~~~vG~~~DIT 121 (125)
...++.+.++||..+|++++..|+.+.++ ..+++++.|||
T Consensus 90 ~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~i~rDIT 130 (130)
T d1ew0a_ 90 GIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp TSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred CCEEEEEEECCCCCEEEEEEEEEEEEECCE--EEEEEEEEECC
T ss_conf 410158898589979999999999997993--89999999787
No 5
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.50 E-value=1.2e-14 Score=95.91 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=86.4
Q ss_pred CCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 48998998168987411351224587668999887510378999999998750456325786044333322235500568
Q T0600 25 MESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQR 104 (125)
Q Consensus 25 ~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~ 104 (125)
+++..+|+|+++++++|++++++.+.. +..+.++++.....+.+...++.+..+..|+++++++|+.+|++++..|++
T Consensus 11 pd~~I~y~N~a~~~~~G~s~~e~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~pi~ 88 (104)
T d1jnua_ 11 PDNPIIFASDRFLELTEYTREEVLGNN--CRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMR 88 (104)
T ss_dssp TTCCEEEECHHHHHHHTCCHHHHTTSC--GGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEC
T ss_pred CCCEEEEECHHHHHHHCCCHHHHCCCC--CEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf 989899996899998886989977862--100101100167776423565259635768999960554289887888899
Q ss_pred CCCCCEEEEEEEEEEC
Q ss_conf 8999689998888732
Q T0600 105 QASGQVDHLWGTVIDM 120 (125)
Q Consensus 105 d~~g~~~~~vG~~~DI 120 (125)
|++|++.+++|+++||
T Consensus 89 d~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 89 DENGDVQYFIGVQQEM 104 (104)
T ss_dssp TTTSSCCEEEEEEEEC
T ss_pred CCCCCEEEEEEEEECC
T ss_conf 9999999999999829
No 6
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.35 E-value=1.2e-12 Score=85.19 Aligned_cols=102 Identities=18% Similarity=0.056 Sum_probs=82.2
Q ss_pred CEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCEEEEEECCCCCC
Q ss_conf 8189986489989981689874113512245876689998875103789999999987504----563257860443333
Q T0600 18 IGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDR----PFDVEYRIVRPDGQV 93 (125)
Q Consensus 18 ~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~e~r~~~~~g~~ 93 (125)
+|++..|.+++.+++|+++++|+|++.+++.+.. +..++++.+.......+........ ....++++++++|..
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 78 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQN--VNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTT 78 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHHHHCCCHHHHTTSB--GGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCE
T ss_pred CEEEEECCCCCEEEECHHHHHHHHHCHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEE
T ss_conf 9899997999399773899987643418661897--42242212100011222344430232111111000133014369
Q ss_pred CCCCCCCEEEECCCCCEEEEEEEEEECHHH
Q ss_conf 222355005688999689998888732112
Q T0600 94 RELLERNHIQRQASGQVDHLWGTVIDMTEH 123 (125)
Q Consensus 94 ~w~~~~~~~~~d~~g~~~~~vG~~~DITer 123 (125)
+|++++..|+++.++. .++|++.||||.
T Consensus 79 ~~v~~~~~~~~~~~~~--~~~~~~~DITE~ 106 (106)
T d1xj3a1 79 FPMHLSIGEMQSGGEP--YFTGFVRDLTEH 106 (106)
T ss_dssp EEEEEEEEEEEETTEE--EEEEEEEECHHH
T ss_pred EEEEEEEEEEEECCEE--EEEEEEEECCCC
T ss_conf 9888999999979937--999999968898
No 7
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.29 E-value=5.5e-12 Score=81.70 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCEE
Q ss_conf 9999998619818998648998998168987411351224587668999887510378999999998----750456325
Q T0600 8 LLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHV----LGDRPFDVE 83 (125)
Q Consensus 8 ~l~~~~~~a~~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~e 83 (125)
.|+.+++.+++|++.+|.+++.+++|+++++++|++.+++.+.... ..+++.+............ ........|
T Consensus 2 ~~~~~~e~~~d~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (113)
T d1v9ya_ 2 IFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID--MLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 79 (113)
T ss_dssp CHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG--GGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCEE--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 7899987084718999299999998616866520136665375200--03321111110000011001243200110002
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCEEEEEEEEEE
Q ss_conf 786044333322235500568899968999888873
Q T0600 84 YRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVID 119 (125)
Q Consensus 84 ~r~~~~~g~~~w~~~~~~~~~d~~g~~~~~vG~~~D 119 (125)
...++++|+.+|++++..|+.++.| + .++|+++|
T Consensus 80 ~~~~~~dG~~~~v~~~~~~i~~~~~-~-~~~~v~rD 113 (113)
T d1v9ya_ 80 LQLEKKDGSKIWTRFALSKVSAEGK-V-YYLALVRD 113 (113)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTE-E-EEEEEEEC
T ss_pred EEECCCCCEEEEEEEEEEEEEECCE-E-EEEEEEEC
T ss_conf 4410245416999999999998990-8-99999999
No 8
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.23 E-value=5.2e-12 Score=81.84 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=81.1
Q ss_pred EEEEECCCCEEEEEHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 8998648998998168987411351-224587668999887510378--9999999987504563257860443333222
Q T0600 20 SWVLHMESGRLEWSQAVHDIFGTDS-ATFDATEDAYFQRVHPDDRAR--VRRELDRHVLGDRPFDVEYRIVRPDGQVREL 96 (125)
Q Consensus 20 ~w~~d~~~~~~~~s~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~ 96 (125)
+-..|++++.+++|++..+++|+.+ +++.+. .+.+++||+|++. ....+..++..+.....+||++++||+++|+
T Consensus 5 ~trh~~~g~~~~vd~~~~~~~gy~~~eelig~--s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv 82 (109)
T d1oj5a_ 5 MTKQDTTGKIISIDTSSLRAAGRTGWEDLVRK--CIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSA 82 (109)
T ss_dssp EEEECTTCCEEEEECHHHHTTCCSCHHHHHHH--HHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEE
T ss_pred EEEECCCCEEEEECHHHHHHHHCCCHHHHCCC--CHHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEE
T ss_conf 99987996299998789667533787898597--5988498013327776678998873022230556440236838999
Q ss_pred CCCCEEEECCCC-CEEEEEEEEE
Q ss_conf 355005688999-6899988887
Q T0600 97 LERNHIQRQASG-QVDHLWGTVI 118 (125)
Q Consensus 97 ~~~~~~~~d~~g-~~~~~vG~~~ 118 (125)
+.++++++|+.| ++..++|+-.
T Consensus 83 ~t~~~~~~~~~~~~~~~Ii~~h~ 105 (109)
T d1oj5a_ 83 HTRCKLCYPQSPDMQPFIMGIHI 105 (109)
T ss_dssp EEEEEEECC----CCCEEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEE
T ss_conf 99999999999996358999999
No 9
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} SCOP: d1ot6a_ d1f98a_ d1f9ia_ d2d01a1 d1koua_ d1ugua_ d1gsva_ d1gswa_ d1gsxa_ d1odva_ d1otda_ d1mzub_ d1mzua_
Probab=98.87 E-value=1.1e-09 Score=69.47 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=74.9
Q ss_pred HHHHCCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC-CCEEEEEECC
Q ss_conf 99861981899864899899816898741135122458766899988751-037899999999875045-6325786044
Q T0600 12 AESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPD-DRARVRRELDRHVLGDRP-FDVEYRIVRP 89 (125)
Q Consensus 12 ~~~~a~~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~-~~~e~r~~~~ 89 (125)
.++++++|++.+|.++++++||+++++++|++++++.+.. +...++|+ ..+.+...+.++++.+.. ..+++.+ +.
T Consensus 22 ~ld~~p~gii~lD~dGri~~~N~a~~~l~G~~~ee~iGk~--~~~~~~P~~~~~~~~~~~~~~~~~G~~~~~~e~~~-~~ 98 (125)
T d1nwza_ 22 QLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKN--FFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTF-DY 98 (125)
T ss_dssp HHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEE-CT
T ss_pred HHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHHCCC--HHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE-CC
T ss_conf 9862781268787998689875589986425825760664--12411873356899999999997298214687887-36
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEE
Q ss_conf 333322235500568899968999
Q T0600 90 DGQVRELLERNHIQRQASGQVDHL 113 (125)
Q Consensus 90 ~g~~~w~~~~~~~~~d~~g~~~~~ 113 (125)
+|+.+|++++.. +..+|...++
T Consensus 99 ~g~~~~V~v~l~--~~~dg~~~~v 120 (125)
T d1nwza_ 99 QMTPTKVKVHMK--KALSGDSYWV 120 (125)
T ss_dssp TSCCEEEEEEEE--ECSSSSEEEE
T ss_pred CCCEEEEEEEEE--ECCCCCEEEE
T ss_conf 992378999999--7389984799
No 10
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=98.86 E-value=9e-10 Score=69.85 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=81.1
Q ss_pred HHHHHHHCCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999986198189986489989981689874113512245876689998875-103789999999987504563257860
Q T0600 9 LHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHP-DDRARVRRELDRHVLGDRPFDVEYRIV 87 (125)
Q Consensus 9 l~~~~~~a~~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~e~r~~ 87 (125)
+..+++..+.|++..|.++..+++|+++++++|++++++.+.. +.+.++| +....+...+..++..+.....+-...
T Consensus 19 ~d~~ld~~p~gi~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~--~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (125)
T d1nwza_ 19 DDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKN--FFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTF 96 (125)
T ss_dssp CHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSB--CCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCC--HHHCCCCHHHHHHEEEECEEEEECCCCCEEEEEEE
T ss_conf 9999857875299990899899981799976245627663997--77726956661002000000210477545888874
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEC
Q ss_conf 443333222355005688999689998888732
Q T0600 88 RPDGQVRELLERNHIQRQASGQVDHLWGTVIDM 120 (125)
Q Consensus 88 ~~~g~~~w~~~~~~~~~d~~g~~~~~vG~~~DI 120 (125)
+++|..+|++++..+. .+|.-.+ -.++||
T Consensus 97 ~~~G~~~~v~v~l~~~--~~g~~~~--v~V~di 125 (125)
T d1nwza_ 97 DYQMTPTKVKVHMKKA--LSGDSYW--VFVKRV 125 (125)
T ss_dssp CTTSCCEEEEEEEEEC--SSSSEEE--EEEEEC
T ss_pred CCCCCEEEEEEEEEEE--CCCCEEE--EEEEEC
T ss_conf 0379479999999994--6999899--999989
No 11
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.85 E-value=7.8e-10 Score=70.17 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=81.3
Q ss_pred HCCCEEEEEECC-CCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEEEECC
Q ss_conf 619818998648-99899816898741135122458766899988751037899999999875045----6325786044
Q T0600 15 DAGIGSWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRP----FDVEYRIVRP 89 (125)
Q Consensus 15 ~a~~g~w~~d~~-~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~e~r~~~~ 89 (125)
..+..++..|.+ +.++++|++++++|||+.+++.+.. +.+++++++.......+...+..+.. ...++..+++
T Consensus 6 ~~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (114)
T d1ll8a_ 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQK--LTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSB--GGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred HCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 00968999999999999977899975468978983997--2214281049999999999985677731003678888804
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEEEEEEEECH
Q ss_conf 33332223550056889996899988887321
Q T0600 90 DGQVRELLERNHIQRQASGQVDHLWGTVIDMT 121 (125)
Q Consensus 90 ~g~~~w~~~~~~~~~d~~g~~~~~vG~~~DIT 121 (125)
+|..+|++++.+++.. +|++ .++++++||+
T Consensus 84 ~G~~~pvevs~~~i~~-~~~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 84 SGEKIPVSVWMKRMRQ-ERRL-CCVVVLEPVE 113 (114)
T ss_dssp TCCCEEEECCEECCBS-SSSB-EEEEEEEECC
T ss_pred CCCEEEEEEEEEEEEE-CCEE-EEEEEEEECC
T ss_conf 9919999999999999-9967-9999999775
No 12
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=98.58 E-value=9.6e-09 Score=64.33 Aligned_cols=100 Identities=6% Similarity=-0.072 Sum_probs=76.2
Q ss_pred HHHHHHHCCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 999998619818998648998998168987411351224587668999887-510378999999998750456-325786
Q T0600 9 LHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVH-PDDRARVRRELDRHVLGDRPF-DVEYRI 86 (125)
Q Consensus 9 l~~~~~~a~~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~-~~e~r~ 86 (125)
+..++++++.|+...|.++++++||+++++|+|++.+++.+... .+.++ ++....+...+...+..+... ..++.
T Consensus 5 ~~A~ld~~p~gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~--~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~- 81 (110)
T d1mzua_ 5 GTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNF--FTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV- 81 (110)
T ss_dssp -CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBC--CCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE-
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCH--HHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE-
T ss_conf 79998478937999969999998577899988679999859978--996498646689999999998655657413799-
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCEEEE
Q ss_conf 044333322235500568899968999
Q T0600 87 VRPDGQVRELLERNHIQRQASGQVDHL 113 (125)
Q Consensus 87 ~~~~g~~~w~~~~~~~~~d~~g~~~~~ 113 (125)
.+++|..++++++.... ++|.-+++
T Consensus 82 l~~~G~~~~v~v~~~~~--~~~~~~~i 106 (110)
T d1mzua_ 82 FDFQMAPVRVQIRMQNA--GVPDRYWI 106 (110)
T ss_dssp EECSSCEEEEEEEEEEC--SSTTEEEE
T ss_pred EECCCCEEEEEEEEEEE--CCCCEEEE
T ss_conf 93079638999999993--47998999
No 13
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=92.74 E-value=0.05 Score=28.42 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=47.4
Q ss_pred EEEEEECC-CCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 18998648-998998168987411351224587668999887510378999999998750456325786044333
Q T0600 19 GSWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQ 92 (125)
Q Consensus 19 g~w~~d~~-~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~ 92 (125)
.+...|.. ....++|+++..++|++++++.+. .+.+++++++...+.+.+..... .......+++...++.
T Consensus 19 ~Llvld~~d~~I~~vS~N~~~lLG~~~~~llG~--~l~dll~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~ 90 (114)
T d2oola2 19 YLFVVSETDLRIASVSANVEDLLRQPPASLLNV--PIAHYLTAASAARLTHALHGGDP-AAINPIRLDVVTPDGE 90 (114)
T ss_dssp EEEEECTTTCBEEEEETTHHHHHSSCGGGGTTC--BGGGGBCHHHHHHHHHHHCC-----CCCSEEEEEEETTEE
T ss_pred EEEEEECCCCEEEEECCCHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHHHCCCC-CCCCCEEEEEECCCCC
T ss_conf 899998899989999488899848892887599--88996899899999998742794-4478789997527998
No 14
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]} SCOP: d1ojga_
Probab=39.70 E-value=12 Score=15.70 Aligned_cols=89 Identities=13% Similarity=0.031 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCC-EEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999999986198-189986489989981689874113512245876689998875103789999999987504563257
Q T0600 6 EKLLHTAESDAGI-GSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEY 84 (125)
Q Consensus 6 E~~l~~~~~~a~~-g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~ 84 (125)
+..+..+.+.++. -++..|+++..+.-+.. ...|.+ +. ++.. +..+++++.. ...
T Consensus 38 ~~~l~~~~~~~~~~~i~i~d~~G~via~s~~--~~iG~~---~~-------------~~~~----~~~a~~g~~~-~~~- 93 (131)
T d1p0za_ 38 KALIDPMRSFSDATYITVGDASGQRLYHVNP--DEIGKS---ME-------------GGDS----DEALINAKSY-VSV- 93 (131)
T ss_dssp HHHHHHHHHHSCCSEEEEEETTSBEEECSSG--GGTTSB---CC-------------SSCC----HHHHHHCCCE-EEE-
T ss_pred HHHHHHHHHHCCCEEEEEECCCCEEEEEECC--CCCCCC---CC-------------CCCH----HHHHHCCCCE-EEE-
T ss_conf 8999999971396489998389758996460--015887---66-------------6501----5666216745-899-
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECHH
Q ss_conf 86044333322235500568899968999888873211
Q T0600 85 RIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE 122 (125)
Q Consensus 85 r~~~~~g~~~w~~~~~~~~~d~~g~~~~~vG~~~DITe 122 (125)
. . ..++. ......|++|++|++++++.+-.++.+
T Consensus 94 ~-~-gt~~~--~~~~~~PV~~~~G~iiGvV~v~~~l~~ 127 (131)
T d1p0za_ 94 R-K-GSLGS--SLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp E-E-ETTEE--EEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred E-E-CCCCC--EEEEEEEEECCCCCEEEEEEEEEEECC
T ss_conf 8-4-37753--578997778499969999998766112
No 15
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=32.29 E-value=16 Score=15.03 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCC-EEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999999986198-1899864899899816898741135122458766899988751037899999999875045632578
Q T0600 7 KLLHTAESDAGI-GSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYR 85 (125)
Q Consensus 7 ~~l~~~~~~a~~-g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~r 85 (125)
+.+..+.+.+++ -++..|.++..+.-+. ...+|.. +.. ++.. .. +..+..+...
T Consensus 39 ~~~~~l~~~~~~~~i~v~D~~G~v~a~~~--~~~iG~~---~~~----------~~~~-------~a-~~~g~~~~~~-- 93 (131)
T d1p0za_ 39 ALIDPMRSFSDATYITVGDASGQRLYHVN--PDEIGKS---MEG----------GDSD-------EA-LINAKSYVSV-- 93 (131)
T ss_dssp HHHHHHHHHSCCSEEEEEETTSBEEECSS--GGGTTSB---CCS----------SCCH-------HH-HHHCCCEEEE--
T ss_pred HHHHHHHHHCCCCEEEEECCCCCEEECCC--HHHCCCC---CCC----------CCHH-------HH-HHCCCCEEEE--
T ss_conf 99999999729828999979987898268--4545876---555----------4127-------89-9718868999--
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECHH
Q ss_conf 6044333322235500568899968999888873211
Q T0600 86 IVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE 122 (125)
Q Consensus 86 ~~~~~g~~~w~~~~~~~~~d~~g~~~~~vG~~~DITe 122 (125)
... .+.. ...-+.|+++++|++++++.+-.++.+
T Consensus 94 ~~g-~~g~--~~~~~~PI~~~~G~viGvV~Vg~~l~~ 127 (131)
T d1p0za_ 94 RKG-SLGS--SLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEE-TTEE--EEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EEC-CCCC--EEEEEEEEECCCCCEEEEEEEEEEHHH
T ss_conf 961-7861--899999889789969999999988688
No 16
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=31.92 E-value=5.5 Score=17.45 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHC--------CC-EEEEEECCC-CEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999999861--------98-189986489-989981689874113512245876689998875103789999
Q T0600 3 AMAEKLLHTAESDA--------GI-GSWVLHMES-GRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRE 69 (125)
Q Consensus 3 a~SE~~l~~~~~~a--------~~-g~w~~d~~~-~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 69 (125)
.+|++-|..-.+-. += .+...|..+ ....+|.++..++|.+++.+.+.. +.+++.++....+...
T Consensus 3 ~~~~~~l~nCe~EPIHipG~IQphG~LLald~~~~~I~~aS~N~~~~lG~~~~~lLG~~--l~~ll~~~~~~~l~~~ 77 (127)
T d2veaa3 3 QLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRT--LGEVFDSFQIDPIQSR 77 (127)
T ss_dssp HHHHHHHHHHHHCCSTTCCEECTTSEEEEEETTTTEEEEEETTHHHHTSCCTTTSSTTT--TTTTSBCC--------
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCC--HHHHCCHHHHHHHHHH
T ss_conf 33755675444344747785078868999988999899985798988485969983999--8898798999999998
No 17
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}
Probab=29.95 E-value=13 Score=15.49 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCCEEEEEEEE
Q ss_conf 355005688999689998888
Q T0600 97 LERNHIQRQASGQVDHLWGTV 117 (125)
Q Consensus 97 ~~~~~~~~d~~g~~~~~vG~~ 117 (125)
-.++.|+.|.+|+++++.|--
T Consensus 115 GtSGSPI~n~~G~vVGLYGNG 135 (152)
T d2fp7b1 115 GTSGSPIVDKNGDVIGLYGNG 135 (152)
T ss_dssp GGTTCEEECTTSCEEEESCCE
T ss_pred CCCCCCEECCCCCEEEEECCE
T ss_conf 999986275699799985364
No 18
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.39 E-value=18 Score=14.66 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=38.9
Q ss_pred EEEEECC-CCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCC
Q ss_conf 8998648-99899816898741135122458766899988751037899999999875045--63257860443333222
Q T0600 20 SWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRP--FDVEYRIVRPDGQVREL 96 (125)
Q Consensus 20 ~w~~d~~-~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~e~r~~~~~g~~~w~ 96 (125)
+...|.. .....+|.++..++|++++.+.+.. +.+++ ++.... ..+.+..... ....+.+...++...|+
T Consensus 38 LLald~~~~~I~~~S~N~~~~lG~~~~~llG~~--l~~ll-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 110 (127)
T d2o9ca2 38 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQT--LAALL-PEQWPA----LQAALPPGCPDALQYRATLDWPAAGHLSL 110 (127)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCB--HHHHC-TTTHHH----HHHHSCTTCCTTCCEEEEECCSSSSEEEE
T ss_pred EEEEECCCCEEEEECCCHHHHHCCCHHHHCCCC--HHHHC-CHHHHH----HHHHHHHCCCCCCCCEEEEECCCCCEEEE
T ss_conf 999988999799987898998387968984999--89988-888999----99986535863222303540689936999
Q ss_pred CC
Q ss_conf 35
Q T0600 97 LE 98 (125)
Q Consensus 97 ~~ 98 (125)
.+
T Consensus 111 ~~ 112 (127)
T d2o9ca2 111 TV 112 (127)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 19
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=23.22 E-value=17 Score=14.90 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCCEEEECCCCCEEEEEEE
Q ss_conf 5500568899968999888
Q T0600 98 ERNHIQRQASGQVDHLWGT 116 (125)
Q Consensus 98 ~~~~~~~d~~g~~~~~vG~ 116 (125)
.++.|+.|.+|+++++.|-
T Consensus 117 tSGSPIin~~G~vVGLYGN 135 (150)
T d2fomb1 117 TSGSPIVDKKGKVVGLYGN 135 (150)
T ss_dssp GTTCEEECTTSCEEEETTC
T ss_pred CCCCCEECCCCCEEEEECC
T ss_conf 9998648789979999546
No 20
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=21.36 E-value=25 Score=13.91 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCC-CEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999998619-8189986489989981689874113512245876689998875103789999999987504563257
Q T0600 6 EKLLHTAESDAG-IGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEY 84 (125)
Q Consensus 6 E~~l~~~~~~a~-~g~w~~d~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~ 84 (125)
++.+..+.+.++ .-++..|.++..+.-+. ...+|- .+.+ ++ +..+++++ .+..
T Consensus 38 q~~~e~~~~~~ga~~i~v~D~~G~~~a~~~--~~~ig~---~~~g----------~~--------~~~Al~G~-~~~~-- 91 (133)
T d3by8a1 38 QAIAEAVRKRNDLLFIVVTDMQSLRYSHPE--AQRIGQ---PFKG----------DD--------ILKALNGE-ENVA-- 91 (133)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTCBBSCCSS--GGGTTS---BCCC----------GG--------GTGGGGTC-CEEE--
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEECC--HHHCCC---CCCC----------CC--------HHHHHCCC-CEEE--
T ss_conf 999999998709709999859964999488--231598---4238----------75--------66775788-3699--
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECHH
Q ss_conf 86044333322235500568899968999888873211
Q T0600 85 RIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE 122 (125)
Q Consensus 85 r~~~~~g~~~w~~~~~~~~~d~~g~~~~~vG~~~DITe 122 (125)
+ ..|..........|+++++|++++++.+-.++++
T Consensus 92 -~--~~gt~g~~~~~~~Pv~~~~G~viGvV~Vg~~~~~ 126 (133)
T d3by8a1 92 -I--NRGFLAQALRVFTPIYDENHKQIGVVAIGLELSR 126 (133)
T ss_dssp -E--ECSSSSCEEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred -E--EEECCCEEEEEEEEEECCCCCEEEEEEEEEEHHH
T ss_conf -9--9854841899997329789929999999988899
No 21
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=20.89 E-value=26 Score=13.85 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=14.3
Q ss_pred CCCEEEECCCCCEEEEE
Q ss_conf 55005688999689998
Q T0600 98 ERNHIQRQASGQVDHLW 114 (125)
Q Consensus 98 ~~~~~~~d~~g~~~~~v 114 (125)
.+++|++|..|+++.++
T Consensus 102 DSGRpi~DN~GrVVaIV 118 (152)
T d1wyka_ 102 DSGRPIMDNSGRVVAIV 118 (152)
T ss_dssp CTTCEEECTTSCEEEEE
T ss_pred CCCCCCCCCCCCEEEEE
T ss_conf 88981276888699999
Done!