Query T0601 APC5750, , 449 residues Match_columns 449 No_of_seqs 117 out of 1371 Neff 8.1 Searched_HMMs 22458 Date Mon Jul 5 09:04:40 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0601.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0601.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vpb_A Putative modulator of D 100.0 0 0 711.4 48.2 433 12-448 14-450 (451) 2 1vl4_A PMBA-related protein; T 100.0 0 0 673.0 49.5 430 13-449 12-447 (447) 3 3gkn_A Bacterioferritin comigr 38.8 6.1 0.00027 17.0 0.4 33 394-426 129-162 (163) 4 2k6x_A Sigma-A, RNA polymerase 36.6 15 0.00067 14.4 2.2 18 14-31 5-22 (72) 5 3lgd_A Adenosine deaminase CEC 33.6 14 0.0006 14.7 1.5 20 328-347 343-362 (508) 6 3ixr_A Bacterioferritin comigr 29.5 10 0.00045 15.5 0.3 32 394-425 145-177 (179) 7 2vxa_A Dodecin; flavoprotein, 23.4 25 0.0011 12.9 3.2 42 16-60 19-60 (72) 8 1o12_A N-acetylglucosamine-6-p 16.0 22 0.00097 13.4 -0.2 19 45-63 30-48 (376) 9 2h4a_A YRAM (HI1655); perplasm 15.7 37 0.0017 11.9 2.3 29 378-407 283-319 (325) 10 2jzc_A UDP-N-acetylglucosamine 15.4 38 0.0017 11.8 2.2 37 332-368 3-50 (224) No 1 >1vpb_A Putative modulator of DNA gyrase; BT3649, structural genomics, JCSG, joint center for structural genomics, PSI; 1.75A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.283.1.1 Probab=100.00 E-value=0 Score=711.37 Aligned_cols=433 Identities=28% Similarity=0.460 Sum_probs=402.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHH Q ss_conf 27999999999999999569978999999612138999777754432010034499999978499998626898999999 Q T0601 12 VLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRET 91 (449) Q Consensus 12 ~~~~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~~~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~~~~i~~~ 91 (449) +.++.+++++++|++|+++||++|||+++.+++.+++++++++++++.+.+.|+||||++|||+||++|+++|+++|+++ T Consensus 14 ~~~~~~~la~~~l~~A~k~Ga~~aEv~~~~~~s~sv~~~~g~ve~~~~s~~~GigIRVi~dgk~G~ast~~ls~~~l~~~ 93 (451) T 1vpb_A 14 ITDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETF 93 (451) T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEEETTEEEEEEESCCCHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEEECEEEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHH T ss_conf 56269999999999999869988999999550489999999812788625466899999899899999377998999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEE Q ss_conf 9999999843577766678870005666-7665--556878889899999999999999960996367767764302069 Q T0601 92 VAAALAIARHTSEDECAGLADAALMARE-LPEL--DLYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGC 168 (449) Q Consensus 92 i~~A~~~a~~~~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (449) +++|+++|+.+++|++..+|++...... .++. +...+..+++++++++++.+++.+++.++++..+. +.++..... T Consensus 94 v~~A~~~Ak~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ie~~~~l~~~~~~~~~~i~~~~-~~~~~~~~~ 172 (451) T 1vpb_A 94 IKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVG-SSYGDGEDF 172 (451) T ss_dssp HHHHHHHHTTSCCCTTCCCCCGGGBCCSCCCCCCCSCTTGGGCCHHHHHHHHHHHHHTTTTSCTTEEEEE-EEEEEEEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECC-CCEEEEEEE T ss_conf 9999998751356864233663001357764311101355679989999999999999874066355312-222431004 Q ss_pred EEEECCCCEEEEEEEEEEEEEEEEEEECCCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE Q ss_conf 9998178268988401899999999957983-553102343455200268889999999999997087788994378997 Q T0601 169 RVYGNSHGFIGGYASTRHSLSCVMIAEGEGQ-MQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLF 247 (449) Q Consensus 169 ~~~~nS~G~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~a~~~a~~~l~~~~~~~g~y~VVl 247 (449) .+++||+|...++.++.+++++.+++.+++. ...+|++...+.+.+ .+++.++++++++|..+++++++|+|+|+||| T Consensus 173 ~~i~nS~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~a~~~l~a~~~~~g~~~Vvl 251 (451) T 1vpb_A 173 AYRLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMND-LIKKGIGQKALERVLRKLGQKKVQSGKYTMVV 251 (451) T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEEECCSTTCCCEEEEEEEESSGGG-SCCSSHHHHHHHHHHTTTTCBCCCCEEEEEEE T ss_pred EEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE T ss_conf 89980278446676435643357898612344554222002333213-45899989999886530154435663356896 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEE Q ss_conf 71689999999861125688860887110378966438515798658775555335658777335660562178781202 Q T0601 248 APEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYV 327 (449) Q Consensus 248 ~P~a~~~ll~~~~~~~~~~~~~~g~S~l~~k~G~~vas~~lti~ddp~~~~~~gs~~fDdEG~~~~~~~LIe~Gvlk~~l 327 (449) +|.+++.|||+++++++++++++|+|+|++|+|+||+||.|||+|||++|+++++++|||||+|+++++||||||||+|| T Consensus 252 ~p~~~~~ll~~~~~~~~~~~~~~g~S~l~~k~g~~v~s~~lti~dDp~~~~~~~s~~fDdEGv~t~~~~lIe~GvL~~~l 331 (451) T 1vpb_A 252 DPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYF 331 (451) T ss_dssp CTTTHHHHHHHHHHTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCB T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCC T ss_conf 00034446778765310223320220234443333314563699840567754443444433344332242376875225 Q ss_pred CCHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCEEECCCCC Q ss_conf 25079997088985587773047992799898999977198699985237721010000887355899978887010314 Q T0601 328 LGTYSGRKLGLPSTANAGGVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQE 407 (449) Q Consensus 328 ~d~~~A~~~g~~~tGna~r~~N~~i~~G~~s~~eli~~v~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenG~i~~~v~~ 407 (449) ||+|+|+++|.+|||| +|+|++++||+.+++|||+++++||||++++|+++|+.||+||++++||||||||+++||++ T Consensus 332 ~~~~tA~~~g~~~tg~--~~~n~~i~~g~~~~~eli~~~~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenGei~~pv~~ 409 (451) T 1vpb_A 332 IDTYNAKKMGVDPTIS--GSSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSE 409 (451) T ss_dssp CCHHHHHHHTSCCCCS--SCSCEEECCCSCCHHHHHHTCSEEEEEEEEEEEEECTTTCEEEEEEEEEEEETTEEEEEEEE T ss_pred CCHHHHHHCCCCCCCC--CCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEE T ss_conf 6625588719985445--55333467999999999862599899994546776999865998874899989999436700 Q ss_pred EEEECCHHHHHHHHHHCCCCEEECCCEEECEEEECCEEEEC Q ss_conf 18971679986312311343145586554418981417714 Q T0601 408 VTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAG 448 (449) Q Consensus 408 ~~i~gn~~~~L~~I~aig~d~~~~g~~~~P~i~v~~v~v~G 448 (449) +||+||++++|++|++||+|.++.+++.+|+|+|++|+|+| T Consensus 410 ~~i~Gn~~~~l~~i~~vg~d~~~~~~~~~P~i~v~~~~v~G 450 (451) T 1vpb_A 410 MNVTGNLITLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSG 450 (451) T ss_dssp EEEEEEHHHHHHTEEEECSCCCTTSSEECCCEEEEEEEEEE T ss_pred EEEEECHHHHHHHHHHHCCCEEECCCCCCCCEEECCEEEEC T ss_conf 69997299998520651676284278637829999689945 No 2 >1vl4_A PMBA-related protein; TM0727, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.95A {Thermotoga maritima MSB8} SCOP: d.283.1.1 Probab=100.00 E-value=0 Score=673.01 Aligned_cols=430 Identities=27% Similarity=0.389 Sum_probs=394.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHHH Q ss_conf 79999999999999995699789999996121389997777544320100344999999784999986268989999999 Q T0601 13 LPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETV 92 (449) Q Consensus 13 ~~~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~~~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~~~~i~~~i 92 (449) ..++++++|++|++|++.|+ +|||++++.++.++++++++++++..+.+.|++|||++|||+||++|++++. +++++ T Consensus 12 ~m~~~e~~e~ll~~a~k~g~-e~eV~~~~~~~~sv~~~~g~l~~~~~~~~~gigIRvi~dgk~G~ast~~l~~--~~~~i 88 (447) T 1vl4_A 12 HMTFEEFKDRLFALAKKNGV-EVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLEN--PEKCF 88 (447) T ss_dssp --CHHHHHHHHHHHHHHHTC-EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEEESSCCC--HHHHH T ss_pred CCCHHHHHHHHHHHHHHCCC-EEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCEEEEEECCCCCH--HHHHH T ss_conf 53799999999999985697-5999999840489999999988888645654999999999899999188863--99999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEE Q ss_conf 99999984357776667887000566676655568788898999999999999999609963677677643020699998 Q T0601 93 AAALAIARHTSEDECAGLADAALMARELPELDLYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYG 172 (449) Q Consensus 93 ~~A~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (449) ++|+++|++.+++++..++++.......+ ....++.+++++++++++..+++.+. .+++++.+.++.++....+.+++ T Consensus 89 ~~A~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ee~ie~l~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~i~ 166 (447) T 1vl4_A 89 EEALSNLQVKDSEEKEYFFEGGKEYREME-TYVGRFEKLSVKEKMDMAKKAHESAA-KDERVVMVPTVMYKDMVIKKIIT 166 (447) T ss_dssp HHHHHGGGCC----CCCCCCSCCCCCCCC-CCCCCGGGSCHHHHHHHHHHHHHHHH-CSTTEEEEEEEEEEEEEEEEEEE T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEEEEEEEEEEEEEEEEE T ss_conf 99999986057787655588534677565-55587246999999999999999986-25883268247886347899996 Q ss_pred CCCCEEEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHH Q ss_conf 17826898840189999999995798355310234345520026888999999999999708778899437899771689 Q T0601 173 NSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIA 252 (449) Q Consensus 173 nS~G~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~a~~~l~~~~~~~g~y~VVl~P~a~ 252 (449) ||+|+++++..+.+++++++++++++. ...+++..++.+.++ +++.+++++++++..+++++++++|+|+|||+|.++ T Consensus 167 nS~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~e~~~~~a~~~a~~~l~a~~~~~g~y~Vvl~p~a~ 244 (447) T 1vl4_A 167 NTLGLDVESQMDGGFLFAMAIARDANP-RSGSWYELARTPEDL-NPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTAL 244 (447) T ss_dssp ETTSCEEEEEEEEEEEEEEEEECSSSC-EEEEEEEEESSGGGC-CHHHHHHHHHHHHHHTTTCBCCCSEEEEEEECHHHH T ss_pred CCCCCEEEEEEEEEEEEEEEEEECCCC-CEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHH T ss_conf 489966678974589999999805871-014566044431000-189999999999987426656765530268657323 Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCHHH Q ss_conf 99999986112568886088711037896643851579865877555533565877733566056217878120225079 Q T0601 253 VGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYS 332 (449) Q Consensus 253 ~~ll~~~~~~~~~~~~~~g~S~l~~k~G~~vas~~lti~ddp~~~~~~gs~~fDdEG~~~~~~~LIe~Gvlk~~l~d~~~ 332 (449) +.|++.+.++++++++++|+|+|++|+|+||+||.|||+|||++|+++++++|||||+|+++++|||+|||++||||+++ T Consensus 245 ~~l~~~~~~~~~~~~v~~g~S~l~~k~Geki~s~~lti~Ddp~~~~~~~s~~fDdEGv~~~~~~lIe~GvL~~~l~~~~t 324 (447) T 1vl4_A 245 LDLMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFLHNLKT 324 (447) T ss_dssp HHHGGGGHHHHBHHHHHTTCCTTTTCTTSBCSCTTCCEEEESCCTTCTTCCSBCTTSCBCCCEEEEETTEECCCBCCHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEECCEEECCCCCCCC T ss_conf 45676534566667775480554110001215731379850356775215773243476642279839877202523454 Q ss_pred HHHHCCCCCCCCC----CCCEEEEECCCCCHHHHHHHCCCEEEEEEECC-CC-CCCCCCEEEEEEEEEEEECCEEECCCC Q ss_conf 9970889855877----73047992799898999977198699985237-72-101000088735589997888701031 Q T0601 333 GRKLGLPSTANAG----GVHNLFVSHGDEDQAALIRRMERGLLVTELMG-QG-VNLVTGDYSRGAAGYWVENGEIQFPVQ 406 (449) Q Consensus 333 A~~~g~~~tGna~----r~~N~~i~~G~~s~~eli~~v~~Gi~v~~~~g-~~-~n~~tG~Fs~~~~g~~IenG~i~~~v~ 406 (449) |+++|.+|||||. ||+|++|+||+.+++|||+++++||||++++| |. +|+.||+||++++||||||||+++||+ T Consensus 325 A~~~g~~~TG~~~~~~~~~~n~~i~~g~~s~~eli~~~~~Gi~v~~~~g~~~~~n~~tG~fs~~~~g~~IenG~i~~~v~ 404 (447) T 1vl4_A 325 ARKEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVE 404 (447) T ss_dssp HHHHTCCCCSCEETTEECCSEEEECCCSBCHHHHHHHHCSEEEEEEEECHHHHBCTTTCEEEEEEEEEEEETTEEEEEEE T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEE T ss_conf 43344688613211554333310378989999997506998999963345557787744698277489998999940570 Q ss_pred CEEEECCHHHHHHHHHHCCCCEEECCCEEECEEEECCEEEECC Q ss_conf 4189716799863123113431455865544189814177149 Q T0601 407 EVTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAGR 449 (449) Q Consensus 407 ~~~i~gn~~~~L~~I~aig~d~~~~g~~~~P~i~v~~v~v~Gk 449 (449) ++||+||++++|++|++||+|+++++++.+|+|+|++|+|+|| T Consensus 405 ~~~i~gn~~~~l~~i~~i~~d~~~~~~~~~P~i~v~~~~v~G~ 447 (447) T 1vl4_A 405 DITISGNFLDLLRKIVLVGNDVKVSQHTIAPSVLVEVLDVAGK 447 (447) T ss_dssp EEEEEEEHHHHHHTEEEEBSCCEECSSEEECCEEEEEEEEC-- T ss_pred EEEEEECHHHHHHHCHHCCCCEEECCCCCCCEEEECCEEEECC T ss_conf 3799975999985024415761754896288399975899429 No 3 >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Probab=38.84 E-value=6.1 Score=16.96 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=18.7 Q ss_pred EEE-ECCEEECCCCCEEEECCHHHHHHHHHHCCC Q ss_conf 999-788870103141897167998631231134 Q T0601 394 YWV-ENGEIQFPVQEVTIAANLRDLFRRIVAVGK 426 (449) Q Consensus 394 ~~I-enG~i~~~v~~~~i~gn~~~~L~~I~aig~ 426 (449) |+| ++|+++....+....+++-++|..+.+..+ T Consensus 129 fiID~~G~I~~~~~~~~~~~~~~eiL~~lka~~k 162 (163) T 3gkn_A 129 FLLSPEGQVVQAWRKVKVAGHADAVLAALKAHAK 162 (163) T ss_dssp EEECTTSCEEEEECSCCSTTHHHHHHHHHHHHCC T ss_pred EEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCC T ss_conf 9995899999998399978699999999997426 No 4 >2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima} Probab=36.65 E-value=15 Score=14.39 Aligned_cols=18 Identities=17% Similarity=0.713 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999569 Q T0601 14 PDLREQVEQIIAEARRQG 31 (449) Q Consensus 14 ~~~~~~~e~ll~~a~~~g 31 (449) +++++.+.++++++|+.| T Consensus 5 ~~~~~~ik~LI~~GK~~G 22 (72) T 2k6x_A 5 PQIERRIKKLISLGKKKG 22 (72) T ss_dssp HHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 899999999999876268 No 5 >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glycoprotein, hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* Probab=33.61 E-value=14 Score=14.70 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=14.8 Q ss_pred CCHHHHHHHCCCCCCCCCCC Q ss_conf 25079997088985587773 Q T0601 328 LGTYSGRKLGLPSTANAGGV 347 (449) Q Consensus 328 ~d~~~A~~~g~~~tGna~r~ 347 (449) .+.+.|-.+|.+--|||.+. T Consensus 343 ~nl~dAlllga~RIGHG~~l 362 (508) T 3lgd_A 343 RNILDALMLNTTRIGHGFAL 362 (508) T ss_dssp THHHHHHHTTCSSEEECTTG T ss_pred HHHHHHHHCCCCCCCCCCCC T ss_conf 99999987287534675001 No 6 >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Probab=29.45 E-value=10 Score=15.54 Aligned_cols=32 Identities=9% Similarity=0.265 Sum_probs=22.5 Q ss_pred EEE-ECCEEECCCCCEEEECCHHHHHHHHHHCC Q ss_conf 999-78887010314189716799863123113 Q T0601 394 YWV-ENGEIQFPVQEVTIAANLRDLFRRIVAVG 425 (449) Q Consensus 394 ~~I-enG~i~~~v~~~~i~gn~~~~L~~I~aig 425 (449) |+| +||+|.....++...+++-++|+.|.+.. T Consensus 145 fIID~dG~I~~~~~~~~~~~~~~evL~~Lka~a 177 (179) T 3ixr_A 145 FLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHA 177 (179) T ss_dssp EEECTTSBEEEEECSCCSTTHHHHHHHHHHHHH T ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHC T ss_conf 998899989998848997868999999998632 No 7 >2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila} Probab=23.38 E-value=25 Score=12.93 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEEEC Q ss_conf 999999999999956997899999961213899977775443201 Q T0601 16 LREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFN 60 (449) Q Consensus 16 ~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~~~i~~~~~~ 60 (449) ..++++.++++|.+. .. .|+.-........+.+|++..++.. T Consensus 19 ~edAi~~Ai~~AskT-l~--ni~~~eV~e~~~~v~dgkv~~yqv~ 60 (72) T 2vxa_A 19 IEEAVNNAIARAGET-LR--HLRWFEVVDTRGHIEGGRVNHWQVT 60 (72) T ss_dssp HHHHHHHHHHHHHHH-CC--CEEEEEEEEEEEEEETTEEEEEEEE T ss_pred HHHHHHHHHHHHHHC-CC--CCEEEEEEEEEEEEECCEEEEEEEE T ss_conf 999999999997635-12--8569999998999959989899999 No 8 >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Probab=15.97 E-value=22 Score=13.36 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=12.7 Q ss_pred EEEEEECCEEEEEEECCCC Q ss_conf 3899977775443201003 Q T0601 45 LSTSVRQGEVETVEFNRDQ 63 (449) Q Consensus 45 ~~~~~~~~~i~~~~~~~~~ 63 (449) -.+.+++|++..+....+. T Consensus 30 gdI~I~dGkI~~Ig~~id~ 48 (376) T 1o12_A 30 GDVEIEEGKIVKVEKRECI 48 (376) T ss_dssp EEEEEETTEEEEEEECCSC T ss_pred EEEEEECCEEEEEECCCCC T ss_conf 7999989999996177418 No 9 >2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A Probab=15.74 E-value=37 Score=11.85 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=17.9 Q ss_pred CCCCCCCCEEEEEE--------EEEEEECCEEECCCCC Q ss_conf 72101000088735--------5899978887010314 Q T0601 378 QGVNLVTGDYSRGA--------AGYWVENGEIQFPVQE 407 (449) Q Consensus 378 ~~~n~~tG~Fs~~~--------~g~~IenG~i~~~v~~ 407 (449) ...+.+||.|+|.- .-+.|+||+++ ||-+ T Consensus 283 ~~~~G~tG~~~fd~~G~~~r~~~~~q~~~G~~v-pv~~ 319 (325) T 2h4a_A 283 YRLSGLTGILSADTNCNVERDMTWYQYQDGAIV-PVVD 319 (325) T ss_dssp CCEEETTEEEEECTTCBEEEECEEEEEETTEEE-ECC- T ss_pred CCCCCCEEEEEECCCCCEEECCEEEEEECCEEE-ECCC T ss_conf 981547288999999987335269999899899-8813 No 10 >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} Probab=15.39 E-value=38 Score=11.80 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=0.0 Q ss_pred HHHHHCCCCCCCCCCCC----------EEEEECCCC-CHHHHHHHCCC Q ss_conf 99970889855877730----------479927998-98999977198 Q T0601 332 SGRKLGLPSTANAGGVH----------NLFVSHGDE-DQAALIRRMER 368 (449) Q Consensus 332 ~A~~~g~~~tGna~r~~----------N~~i~~G~~-s~~eli~~v~~ 368 (449) ++......++|+.||++ .+++..|.. ++++||+.|.+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~IfVTvGtT~~F~~LI~~Vl~ 50 (224) T 2jzc_A 3 SSHHHHHHSSGLVPRGSHMLEGIIEEKALFVTCGATVPFPKLVSCVLS 50 (224) T ss_dssp ---------------------CCCCSCCEEEECCSCCSCHHHHHHHTS T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCC T ss_conf 754432335788987578760698789699968999985899999868 Done!