Query T0601 APC5750, , 449 residues Match_columns 449 No_of_seqs 117 out of 1371 Neff 8.1 Searched_HMMs 15564 Date Mon Jul 5 09:07:31 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0601.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0601.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vpba_ d.283.1.1 (A:) Putativ 100.0 0 0 710.3 48.5 431 14-448 4-438 (439) 2 d1vpba_ d.283.1.1 (A:) Putativ 100.0 0 0 697.8 48.2 433 12-448 2-438 (439) 3 d1vl4a_ d.283.1.1 (A:) PmbA-re 100.0 0 0 657.8 49.7 426 15-447 2-433 (433) 4 d3pmga4 d.129.2.1 (A:421-561) 25.8 16 0.001 13.2 5.1 59 42-100 66-127 (141) 5 d1b63a2 d.122.1.2 (A:-2-216) D 19.3 21 0.0014 12.4 4.1 39 12-50 21-59 (218) 6 d1nm3a2 c.47.1.10 (A:3-165) N- 18.5 15 0.00099 13.3 0.3 45 285-329 90-140 (163) 7 d1h7sa2 d.122.1.2 (A:29-231) D 17.0 24 0.0015 12.0 3.6 39 13-51 4-42 (203) 8 d1kfia4 d.129.2.1 (A:444-572) 15.0 27 0.0017 11.7 3.7 61 39-101 53-116 (129) 9 d1srqa_ e.55.1.1 (A:) Rap1 GTP 11.0 35 0.0023 11.0 2.2 11 246-256 95-105 (336) 10 d1zyea1 c.47.1.10 (A:6-163) Pe 10.9 36 0.0023 11.0 0.8 38 287-325 91-131 (158) No 1 >d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]} SCOP: d1vl4a_ Probab=100.00 E-value=0 Score=710.30 Aligned_cols=431 Identities=29% Similarity=0.482 Sum_probs=404.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHH Q ss_conf 99999999999999956997899999961213899977775443201003449999997849999862689899999999 Q T0601 14 PDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVA 93 (449) Q Consensus 14 ~~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~~~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~~~~i~~~i~ 93 (449) ++++++++++|++|++.|||+|||+++++++.+++++++++++...+.+.|++|||++|||+||++++++++++++++++ T Consensus 4 d~~~~~a~~il~~a~k~Gad~aei~~~~~~~~si~~~~g~ie~~~~~~~~gi~iRVi~~gr~G~ast~~ls~~~l~~~i~ 83 (439) T d1vpba_ 4 DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETFIK 83 (439) T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEEETTEEEEEEESCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEECCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHH T ss_conf 68999999999999966997899999961212799977775443213344338999996849999853789899999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEE Q ss_conf 9999984357776667887000566-67665556--87888989999999999999996099636776776430206999 Q T0601 94 AALAIARHTSEDECAGLADAALMAR-ELPELDLY--HPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRV 170 (449) Q Consensus 94 ~A~~~a~~~~~~~~~~l~~~~~~~~-~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (449) +|+++|+.++++++..++++..... ..++++.+ ++.+++++++++++.++++.++..++++.++ .+.++.....+. T Consensus 84 ~A~~~a~~~~~d~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~ee~ie~~~~~~~~a~~~~~~I~~~-~~~~~~~~~~~~ 162 (439) T d1vpba_ 84 NGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISV-GSSYGDGEDFAY 162 (439) T ss_dssp HHHHHHTTSCCCTTCCCCCGGGBCCSCCCCCCCSCTTGGGCCHHHHHHHHHHHHHTTTTSCTTEEEE-EEEEEEEEEEEE T ss_pred HHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE-EEEHEEEEEEEE T ss_conf 9999973135676655577212125677633335575335788999999999999986048825786-300100001446 Q ss_pred EECCCCEEEEEEEEEEEEEEEEEEECCCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC Q ss_conf 98178268988401899999999957983-55310234345520026888999999999999708778899437899771 Q T0601 171 YGNSHGFIGGYASTRHSLSCVMIAEGEGQ-MQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAP 249 (449) Q Consensus 171 ~~nS~G~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~a~~~a~~~l~~~~~~~g~y~VVl~P 249 (449) ++||+|..+++..+++++++.+.+.+++. ..++|++..++.+.++ +.+.++++++++|+.+++++++++|+|||||+| T Consensus 163 ~~nS~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l-~~~~~~~~a~~~a~~~l~a~~i~~g~y~VIl~p 241 (439) T d1vpba_ 163 RLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMNDL-IKKGIGQKALERVLRKLGQKKVQSGKYTMVVDP 241 (439) T ss_dssp EEETTTEEEEEEEEEEEEEEEEEECCSTTCCCEEEEEEEESSGGGS-CCSSHHHHHHHHHHTTTTCBCCCCEEEEEEECT T ss_pred EEECCCCEEEEEEEEEEEEEEEEEEECCCEEEEEECCCCCCCHHHC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC T ss_conf 7741663000122368999999997078633201033201445540-157899999999998605543455303355631 Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECC Q ss_conf 68999999986112568886088711037896643851579865877555533565877733566056217878120225 Q T0601 250 EIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLG 329 (449) Q Consensus 250 ~a~~~ll~~~~~~~~~~~~~~g~S~l~~k~G~~vas~~lti~ddp~~~~~~gs~~fDdEG~~~~~~~LIe~Gvlk~~l~d 329 (449) .+++.|+|++++|+++.++++|+|+|++|+|+||+||.|||+|||++|+++|+++|||||+|+++++||+||||++|||| T Consensus 242 ~~~~~ll~~~~~~~~~~~~~~g~S~l~~~lG~~i~s~~lti~Ddp~~~~~~gs~~fDdEGv~~~~~~lI~~Gvl~~~l~~ 321 (439) T d1vpba_ 242 MNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYFID 321 (439) T ss_dssp TTHHHHHHHHHHTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCBCC T ss_pred HHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEECCCC T ss_conf 56899999999841747776078015410576332884599972344565434432678865346614468856203145 Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCEEECCCCCEE Q ss_conf 07999708898558777304799279989899997719869998523772101000088735589997888701031418 Q T0601 330 TYSGRKLGLPSTANAGGVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQEVT 409 (449) Q Consensus 330 ~~~A~~~g~~~tGna~r~~N~~i~~G~~s~~eli~~v~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenG~i~~~v~~~~ 409 (449) +++|+++|.+||||| ++|++|+||+.+++|||+++++||||++++|+++|+.||+||++++||+|||||+++||+++| T Consensus 322 ~~~A~~~g~~~tgn~--~~n~~~~~g~~s~~eli~~~~~Gi~i~~~~g~~~n~~tG~fs~~~~g~~IenG~~~~pv~~~~ 399 (439) T d1vpba_ 322 TYNAKKMGVDPTISG--SSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSEMN 399 (439) T ss_dssp HHHHHHHTSCCCCSS--CSCEEECCCSCCHHHHHHTCSEEEEEEEEEEEEECTTTCEEEEEEEEEEEETTEEEEEEEEEE T ss_pred CHHHHHHCCCCCCCC--CCEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEECCEEEEEECCEEECCCCCEE T ss_conf 126776086344577--437898179977799998718749998203672033111078611268987888710213407 Q ss_pred EECCHHHHHHHHHHCCCCEEECCCEEECEEEECCEEEEC Q ss_conf 971679986312311343145586554418981417714 Q T0601 410 IAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAG 448 (449) Q Consensus 410 i~gn~~~~L~~I~aig~d~~~~g~~~~P~i~v~~v~v~G 448 (449) |+||++++|++|++||+|+++++++.+|+|+|++|+|+| T Consensus 400 i~gn~~~~l~~i~~ig~d~~~~~~~~~P~i~v~~~~v~G 438 (439) T d1vpba_ 400 VTGNLITLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSG 438 (439) T ss_dssp EEEEHHHHHHTEEEECSCCCTTSSEECCCEEEEEEEEEE T ss_pred EECCHHHHHHHHHHCCCCEEECCCEEECEEEECCEEEEC T ss_conf 861789997643412453366486642508984648832 No 2 >d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=100.00 E-value=0 Score=697.75 Aligned_cols=433 Identities=28% Similarity=0.463 Sum_probs=401.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHH Q ss_conf 27999999999999999569978999999612138999777754432010034499999978499998626898999999 Q T0601 12 VLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRET 91 (449) Q Consensus 12 ~~~~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~~~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~~~~i~~~ 91 (449) +.++.++++|++|++|+++|+++|||+++.+++++++++||++++++.+.+.|++|||++|||+||++|+++|+++++++ T Consensus 2 ~~~~~~~lae~~l~~a~~~Ga~~aev~~~~~~~~si~~~~g~le~~~~~~~~gigiRVi~dgr~G~ast~~l~~~~l~~~ 81 (439) T d1vpba_ 2 ITDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETF 81 (439) T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEEETTEEEEEEESCCCHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHH T ss_conf 77269999999999999869988999999630279999999801788713345899999899899999277998999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEE Q ss_conf 999999984357776667887000566-676655--56878889899999999999999960996367767764302069 Q T0601 92 VAAALAIARHTSEDECAGLADAALMAR-ELPELD--LYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGC 168 (449) Q Consensus 92 i~~A~~~a~~~~~~~~~~l~~~~~~~~-~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (449) +++|+++|+++++|++..+|++..... ..++.. ......+++++++++++++++.++..++++..+. +.+...... T Consensus 82 v~~A~~~Ak~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ie~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~ 160 (439) T d1vpba_ 82 IKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVG-SSYGDGEDF 160 (439) T ss_dssp HHHHHHHHTTSCCCTTCCCCCGGGBCCSCCCCCCCSCTTGGGCCHHHHHHHHHHHHHTTTTSCTTEEEEE-EEEEEEEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-CCEEEEEEE T ss_conf 9999998641256853234661331146775421000244446978998999999998654156223202-103543458 Q ss_pred EEEECCCCEEEEEEEEEEEEEEEEEEECCCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE Q ss_conf 9998178268988401899999999957983-553102343455200268889999999999997087788994378997 Q T0601 169 RVYGNSHGFIGGYASTRHSLSCVMIAEGEGQ-MQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLF 247 (449) Q Consensus 169 ~~~~nS~G~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~a~~~a~~~l~~~~~~~g~y~VVl 247 (449) .+++||+|...++..+++++.+.+.+..++. ...+|++...+.+++ .+++.++++++++|...++++++++|+|+||| T Consensus 161 ~~~~nS~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~a~~~l~a~~~~~g~~~Vil 239 (439) T d1vpba_ 161 AYRLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMND-LIKKGIGQKALERVLRKLGQKKVQSGKYTMVV 239 (439) T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEEECCSTTCCCEEEEEEEESSGGG-SCCSSHHHHHHHHHHTTTTCBCCCCEEEEEEE T ss_pred EEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 99970488515787777631148999823654444400000122233-57999999999885430154435652366896 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEE Q ss_conf 71689999999861125688860887110378966438515798658775555335658777335660562178781202 Q T0601 248 APEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYV 327 (449) Q Consensus 248 ~P~a~~~ll~~~~~~~~~~~~~~g~S~l~~k~G~~vas~~lti~ddp~~~~~~gs~~fDdEG~~~~~~~LIe~Gvlk~~l 327 (449) +|.+++.|+|++++|++++++++|+|+|++|+|+||+||.|||+|||++|+++++++|||||+|+++++||||||||+|| T Consensus 240 ~p~~~~~ll~~~~~~~~~~~~~~g~S~l~~~lg~~v~s~~lti~ddp~~~~~~~s~~fDdEGv~t~~~~lIe~Gvl~~~l 319 (439) T d1vpba_ 240 DPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYF 319 (439) T ss_dssp CTTTHHHHHHHHHHTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCB T ss_pred ECCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCC T ss_conf 00035556788876422431210330223221011127651699851577754555544333554342122276876114 Q ss_pred CCHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCEEECCCCC Q ss_conf 25079997088985587773047992799898999977198699985237721010000887355899978887010314 Q T0601 328 LGTYSGRKLGLPSTANAGGVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQE 407 (449) Q Consensus 328 ~d~~~A~~~g~~~tGna~r~~N~~i~~G~~s~~eli~~v~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenG~i~~~v~~ 407 (449) ||+|+|+++|.+|||| ||+|++++||+.+++|||+++++||||++++|+++|+.||+||++++||||||||+++||++ T Consensus 320 ~~~~~A~~~g~~~tg~--~~~n~~i~pg~~s~~eli~~~~~Gl~v~~~~g~~~n~~tG~fs~~~~g~~ienGei~~~v~~ 397 (439) T d1vpba_ 320 IDTYNAKKMGVDPTIS--GSSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSE 397 (439) T ss_dssp CCHHHHHHHTSCCCCS--SCSCEEECCCSCCHHHHHHTCSEEEEEEEEEEEEECTTTCEEEEEEEEEEEETTEEEEEEEE T ss_pred CCHHHHHHCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEE T ss_conf 5702387639996546--55223467999899999634798899995746766899864998775999989999236700 Q ss_pred EEEECCHHHHHHHHHHCCCCEEECCCEEECEEEECCEEEEC Q ss_conf 18971679986312311343145586554418981417714 Q T0601 408 VTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAG 448 (449) Q Consensus 408 ~~i~gn~~~~L~~I~aig~d~~~~g~~~~P~i~v~~v~v~G 448 (449) +||+||++++|++|++||+|.++.+++++|+++|++|+|+| T Consensus 398 ~~i~gn~~~~l~~i~~ig~d~~~~~~~~~P~~~v~~~~v~G 438 (439) T d1vpba_ 398 MNVTGNLITLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSG 438 (439) T ss_dssp EEEEEEHHHHHHTEEEECSCCCTTSSEECCCEEEEEEEEEE T ss_pred EEEEECHHHHHHHHHHHCCCEEECCCCCCCCEEECCEEEEC T ss_conf 69998499998521651676085388747839999589944 No 3 >d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=657.78 Aligned_cols=426 Identities=27% Similarity=0.391 Sum_probs=390.2 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEECCEEEEEEECCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHH Q ss_conf 99999999999999569978999999612138999777754432010034499999978499998626898999999999 Q T0601 15 DLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAA 94 (449) Q Consensus 15 ~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~~~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~~~~i~~~i~~ 94 (449) ++++++++++++|++.|+ +|||++++.++.+++++|++++++..+.+.|++|||++|||+||++|++++. ++.++++ T Consensus 2 ~~~~~~e~ll~~a~k~g~-e~ev~~~~~~~~~i~~~n~~i~~~~~~~~~gigIRv~~dgk~G~ast~~le~--~~~~i~~ 78 (433) T d1vl4a_ 2 TFEEFKDRLFALAKKNGV-EVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLEN--PEKCFEE 78 (433) T ss_dssp CHHHHHHHHHHHHHHHTC-EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEEESSCCC--HHHHHHH T ss_pred CHHHHHHHHHHHHHHCCC-EEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCEEEEEECCCCCH--HHHHHHH T ss_conf 879999999999984797-4999999833689999999988878636743999999999899999188754--9999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEECC Q ss_conf 99998435777666788700056667665556878889899999999999999960996367767764302069999817 Q T0601 95 ALAIARHTSEDECAGLADAALMARELPELDLYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNS 174 (449) Q Consensus 95 A~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nS 174 (449) |+++|++.++++...+++........ .....++..++++++++++.++++.+.+ +++++.+..+.++....+++++|| T Consensus 79 A~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ee~i~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~i~nS 156 (433) T d1vl4a_ 79 ALSNLQVKDSEEKEYFFEGGKEYREM-ETYVGRFEKLSVKEKMDMAKKAHESAAK-DERVVMVPTVMYKDMVIKKIITNT 156 (433) T ss_dssp HHHGGGCC----CCCCCCSCCCCCCC-CCCCCCGGGSCHHHHHHHHHHHHHHHHC-STTEEEEEEEEEEEEEEEEEEEET T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEEEEEEEEEEEEEEECC T ss_conf 99987623656555558853467756-5555773459999999999999999861-588315734558755789999527 Q ss_pred CCEEEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHH Q ss_conf 82689884018999999999579835531023434552002688899999999999970877889943789977168999 Q T0601 175 HGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIAVG 254 (449) Q Consensus 175 ~G~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~a~~~l~~~~~~~g~y~VVl~P~a~~~ 254 (449) +|++.++..+.+++++.+++++++. ...+++..++.+.++ +++.++++++++|..+++++++++|+|+|||+|.+++. T Consensus 157 ~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l-d~~~~~~~a~~~a~~~l~~~~i~~g~y~Vvl~p~a~~~ 234 (433) T d1vl4a_ 157 LGLDVESQMDGGFLFAMAIARDANP-RSGSWYELARTPEDL-NPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLD 234 (433) T ss_dssp TSCEEEEEEEEEEEEEEEEECSSSC-EEEEEEEEESSGGGC-CHHHHHHHHHHHHHHTTTCBCCCSEEEEEEECHHHHHH T ss_pred CCCEEEEEEEEEEEEEEEEECCCCC-EEEEEEECCCCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHH T ss_conf 9955678972079999999826970-035667244431010-18999999988766530655688763036855732345 Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCHHHHH Q ss_conf 99998611256888608871103789664385157986587755553356587773356605621787812022507999 Q T0601 255 LFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGR 334 (449) Q Consensus 255 ll~~~~~~~~~~~~~~g~S~l~~k~G~~vas~~lti~ddp~~~~~~gs~~fDdEG~~~~~~~LIe~Gvlk~~l~d~~~A~ 334 (449) |++++.+.++++++++|+|+|++|+|+||+||.|||+|||++|+++++++|||||+|+++++||+||||++||||+++|+ T Consensus 235 l~~~~~~~~~~~~~~~g~S~l~~k~Ge~i~s~~ltl~ddp~~~~~~~s~~fDdEG~~~~~~~li~~Gvl~~~l~~~~~A~ 314 (433) T d1vl4a_ 235 LMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFLHNLKTAR 314 (433) T ss_dssp HGGGGHHHHBHHHHHTTCCTTTTCTTSBCSCTTCCEEEESCCTTCTTCCSBCTTSCBCCCEEEEETTEECCCBCCHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEECCEEECCCCCCCCCC T ss_conf 66652456666677637045423222200352057862024678741576235557664328983988811142334443 Q ss_pred HHCCCCCCCCC----CCCEEEEECCCCCHHHHHHHCCCEEEEEEECC-CC-CCCCCCEEEEEEEEEEEECCEEECCCCCE Q ss_conf 70889855877----73047992799898999977198699985237-72-10100008873558999788870103141 Q T0601 335 KLGLPSTANAG----GVHNLFVSHGDEDQAALIRRMERGLLVTELMG-QG-VNLVTGDYSRGAAGYWVENGEIQFPVQEV 408 (449) Q Consensus 335 ~~g~~~tGna~----r~~N~~i~~G~~s~~eli~~v~~Gi~v~~~~g-~~-~n~~tG~Fs~~~~g~~IenG~i~~~v~~~ 408 (449) ++|.+|||||. ||+|++++||+.+++|||+++++||||+++|| |. +|+.||+||++++||||||||+++||+++ T Consensus 315 ~~~~~~TG~a~~~~~~~~n~~i~~g~~s~~eli~~~~~Gi~v~~~~g~~~~~n~~tG~fs~~~~g~~IenGe~~~~v~~~ 394 (433) T d1vl4a_ 315 KEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDI 394 (433) T ss_dssp HHTCCCCSCEETTEECCSEEEECCCSBCHHHHHHHHCSEEEEEEEECHHHHBCTTTCEEEEEEEEEEEETTEEEEEEEEE T ss_pred CCCCCCCHHHHCCCCCCCCEECCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE T ss_conf 34467862442145433430227998998999732798899996445555778776569827859999899993067027 Q ss_pred EEECCHHHHHHHHHHCCCCEEECCCEEECEEEECCEEEE Q ss_conf 897167998631231134314558655441898141771 Q T0601 409 TIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVA 447 (449) Q Consensus 409 ~i~gn~~~~L~~I~aig~d~~~~g~~~~P~i~v~~v~v~ 447 (449) ||+||++++|++|++||+|+++.+++.+|+|+|++|+|+ T Consensus 395 ~i~gn~~~~l~~i~~v~~~~~~~~~~~~P~i~v~~~~v~ 433 (433) T d1vl4a_ 395 TISGNFLDLLRKIVLVGNDVKVSQHTIAPSVLVEVLDVA 433 (433) T ss_dssp EEEEEHHHHHHTEEEEBSCCEECSSEEECCEEEEEEEEC T ss_pred EEEECHHHHHHHHHHHCCCEEECCCCCCCCEEECCEEEC T ss_conf 999769999862155267607428963880997741959 No 4 >d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=25.77 E-value=16 Score=13.22 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=21.8 Q ss_pred ECCEEEEEECC--EEEEEEECCCCCEEEEEEECCEEEEEEECCCC-HHHHHHHHHHHHHHHH Q ss_conf 12138999777--75443201003449999997849999862689-8999999999999984 Q T0601 42 EQGLSTSVRQG--EVETVEFNRDQGFGITLYAGQRKGSASTSATG-EAAIRETVAAALAIAR 100 (449) Q Consensus 42 ~~~~~~~~~~~--~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~-~~~i~~~i~~A~~~a~ 100 (449) .+...+.|++| .|=.++-+-+.|..||++.+.-..-.+--.++ .+.|+.+|+-|.+.++ T Consensus 66 ~QGlRi~F~dGsRiVfRLSGTGs~GATiRlY~E~ye~d~~~~~~~~q~aL~~li~~Al~~s~ 127 (141) T d3pmga4 66 NQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQ 127 (141) T ss_dssp CCCEEEEETTSCEEEEEEEECSSSCEEEEEEEEEEECCTTTTTSCHHHHHHHHHHHHHHHHT T ss_pred CCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 88579997289789999457889983799998740589677075889999999999999977 No 5 >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Probab=19.27 E-value=21 Score=12.39 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEE Q ss_conf 279999999999999995699789999996121389997 Q T0601 12 VLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVR 50 (449) Q Consensus 12 ~~~~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~ 50 (449) .+++....+..|++-+..+||...+|.+.......+.+. T Consensus 21 vi~~~~~~vkELveNsiDA~At~I~V~i~~~g~~~i~V~ 59 (218) T d1b63a2 21 VVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIR 59 (218) T ss_dssp HCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEE T ss_pred EEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEE T ss_conf 773588999999864352799889999985981089995 No 6 >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Probab=18.47 E-value=15 Score=13.29 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=25.0 Q ss_pred CCEEEEEECCCCCC--CCCCC---CCCCCCCCCCC-CEEEECCEEEEEECC Q ss_conf 85157986587755--55335---65877733566-056217878120225 Q T0601 285 PEWLSIDERPHLVG--ALGSA---SFDSDGLATYA-KPFVENGELVSYVLG 329 (449) Q Consensus 285 s~~lti~ddp~~~~--~~gs~---~fDdEG~~~~~-~~LIe~Gvlk~~l~d 329 (449) ...+.+..||.... .+|.. .....|..++| +.||+||+++....+ T Consensus 90 ~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~IiddG~I~~~~v~ 140 (163) T d1nm3a2 90 SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIE 140 (163) T ss_dssp CTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEEC T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEEE T ss_conf 676446136774777776542210014565431237999719989999985 No 7 >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Probab=16.97 E-value=24 Score=12.05 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=23.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEC Q ss_conf 799999999999999956997899999961213899977 Q T0601 13 LPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQ 51 (449) Q Consensus 13 ~~~~~~~~e~ll~~a~~~g~~~~ev~~~~~~~~~~~~~~ 51 (449) +.++...+..|++-+..+||...+|.+.......+.+++ T Consensus 4 i~~~~~~v~ELi~NsiDA~At~I~i~i~~~g~~~i~V~D 42 (203) T d1h7sa2 4 VLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSD 42 (203) T ss_dssp ECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEE T ss_pred EECHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEE T ss_conf 835799999999778748998899999869888999952 No 8 >d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Probab=15.05 E-value=27 Score=11.74 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=32.4 Q ss_pred EEEECCEEEEEECC--EEEEEEECCCCCEEEEEEECCEEEEEEECCCC-HHHHHHHHHHHHHHHHC Q ss_conf 99612138999777--75443201003449999997849999862689-89999999999999843 Q T0601 39 VSLEQGLSTSVRQG--EVETVEFNRDQGFGITLYAGQRKGSASTSATG-EAAIRETVAAALAIARH 101 (449) Q Consensus 39 ~~~~~~~~~~~~~~--~i~~~~~~~~~gigvRv~~~gk~G~~st~~l~-~~~i~~~i~~A~~~a~~ 101 (449) ++..+...+.|++| .|=.++-+-+.|..||++.+.--. .....+ .+.|+.+|+-|.+.+++ T Consensus 53 vs~~QGlRi~F~dGsRiVfRLSGTGs~GATiRlY~E~ye~--d~~~~~~q~aL~~li~~al~~s~i 116 (129) T d1kfia4 53 VSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQ--QQIQHETATALANIIKLGLEISDI 116 (129) T ss_dssp EECCCCEEEECTTSCEEEEEECSSCSSSEEEEEEEEEEES--SCCCSCHHHHHHHHHHHHHHHHCH T ss_pred CCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 1148846999728978999945888898279987331278--845579899988999999999868 No 9 >d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1srqb_ d1srqc_ d1srqd_ Probab=11.04 E-value=35 Score=10.98 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=4.5 Q ss_pred EECCHHHHHHH Q ss_conf 97716899999 Q T0601 246 LFAPEIAVGLF 256 (449) Q Consensus 246 Vl~P~a~~~ll 256 (449) |+.|.+--.|+ T Consensus 95 i~~p~~~~~l~ 105 (336) T d1srqa_ 95 VLYPKASRLIV 105 (336) T ss_dssp CCCTTHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 35855899999 No 10 >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Probab=10.93 E-value=36 Score=10.96 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=17.4 Q ss_pred EEEEEECCCCC--CCCCCCCCCCCCCCCCCCEEE-ECCEEEE Q ss_conf 15798658775--555335658777335660562-1787812 Q T0601 287 WLSIDERPHLV--GALGSASFDSDGLATYAKPFV-ENGELVS 325 (449) Q Consensus 287 ~lti~ddp~~~--~~~gs~~fDdEG~~~~~~~LI-e~Gvlk~ 325 (449) .+.+..||... ..+|.+ ...+|++.+.+.+| ++|+++- T Consensus 91 ~f~llsD~~~~~~~~ygv~-~~~~g~~~R~tfvID~~G~I~~ 131 (158) T d1zyea1 91 NIALLSDLTKQISRDYGVL-LEGPGLALRGLFIIDPNGVIKH 131 (158) T ss_dssp SSEEEECTTSHHHHHTTCE-ETTTTEECEEEEEECTTSBEEE T ss_pred CCCCCCCCCCHHHHHHHHC-CCCCCCCCCEEEEECCCCEEEE T ss_conf 5443335631888887751-2457845317999899998999 Done!