Query         T0602 3NKZ, Yersinia enterocolitica, 123 residues
Match_columns 123
No_of_seqs    89 out of 91
Neff          5.6 
Searched_HMMs 22458
Date          Mon Jul  5 08:57:38 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0602.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0602.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3a7m_A Flagellar protein FLIT; 100.0 1.2E-40 5.6E-45  267.6  14.9  120    4-123     1-120 (122)
  2 3h3m_A Flagellar protein FLIT; 100.0 2.8E-35 1.2E-39  234.9  11.7  113    2-114    12-124 (126)
  3 2fup_A Hypothetical protein PA  68.4     6.2 0.00028   19.1   7.3  102    9-111    14-141 (157)
  4 2f86_B Hypothetical protein K1  47.1      14 0.00064   16.8   3.8   28   12-39      9-36  (143)
  5 2ux0_A Calcium-calmodulin depe  42.6      17 0.00075   16.4   4.9   37    3-39      1-37  (143)
  6 3blz_A NTF2-like protein of un  35.3      22 0.00098   15.7   4.0   35    4-39      2-36  (128)
  7 2hz8_A De novo designed DIIRON  32.8      24  0.0011   15.5   4.9   80    4-88      1-84  (115)
  8 3h51_A Putative calcium/calmod  30.3      27  0.0012   15.2   2.8   29   12-40     17-45  (156)
  9 3bc1_B Synaptotagmin-like prot  29.4      28  0.0012   15.1   2.8   38   69-106     9-46  (59)
 10 2r4i_A Uncharacterized protein  26.2      31  0.0014   14.8   3.3   28   14-41      5-32  (123)
 11 3e4x_A APC36150; structural ge  21.6      39  0.0017   14.2   2.7   50    1-50      1-65  (157)
 12 2rfr_A Uncharacterized protein  21.5      39  0.0017   14.2   3.0   35    6-40     10-44  (155)

No 1  
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=100.00  E-value=1.2e-40  Score=267.60  Aligned_cols=120  Identities=35%  Similarity=0.584  Sum_probs=118.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66417899999999999999999886238189999999999999998730588999988899999999999864899999
Q T0602             4 MERHQHLLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIEIKR   83 (123)
Q Consensus         4 M~~~~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~q~~~~~lL~~IL~ndaeIr~   83 (123)
                      |+++.++|+.|++|+++|++||++|++||||+|+++|.+|+.+|+.+++.+++++++++++++++++|++||+||++||+
T Consensus         1 M~~~~~ll~~Yq~il~lS~~ML~aA~~gdWd~L~~lE~~y~~~ve~l~~~~~~~~l~~~~~~~~~~lL~~IL~ndaeIr~   80 (122)
T 3a7m_A            1 MTSTVEFINRWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKG   80 (122)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99679999999999999999999988788888999999999999999847899999999999999999999976999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9999999999999853556789876642479844789899
Q T0602            84 LLQLRLDRLSDLVGQSTKQQAVNNTYGQFPDHALLLGETQ  123 (123)
Q Consensus        84 Llq~rldeL~~li~q~~~q~~l~~aYgqf~~~~l~~~~~~  123 (123)
                      |++||||+|+.+|+++++||++|+|||||+|++||||+|-
T Consensus        81 Ll~~rmdeL~~l~~~~~~q~~l~~aYgqf~g~~l~p~~~~  120 (122)
T 3a7m_A           81 LLQQRLDELSSLIGQSTRQKSLNNAYGRLSGMLLVPDAPG  120 (122)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCCCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999999999999988887999999875888746899988


No 2  
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Bordetella bronchiseptica}
Probab=100.00  E-value=2.8e-35  Score=234.93  Aligned_cols=113  Identities=28%  Similarity=0.431  Sum_probs=110.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             75664178999999999999999998862381899999999999999987305889999888999999999998648999
Q T0602             2 NAMERHQHLLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIEI   81 (123)
Q Consensus         2 ~~M~~~~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~q~~~~~lL~~IL~ndaeI   81 (123)
                      .+|+++.++|++||+|+++|++||++|++||||+|+++|.+|+.+||.|++.+++++++++++++|+++|++||+||++|
T Consensus        12 ~~m~~~~~ll~~Yq~I~~lS~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~l~~~~~~~k~~lL~~IL~nDaeI   91 (126)
T 3h3m_A           12 TALTQHAPVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAV   91 (126)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             40302439999999999999999999888877889998999999999998558899999999999999999999879999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999853556789876642479
Q T0602            82 KRLLQLRLDRLSDLVGQSTKQQAVNNTYGQFPD  114 (123)
Q Consensus        82 r~Llq~rldeL~~li~q~~~q~~l~~aYgqf~~  114 (123)
                      |+|++|||++|+.+|+++++++++|+|||.|++
T Consensus        92 R~Ll~prld~L~~l~~~~~rq~~l~~aYg~~a~  124 (126)
T 3h3m_A           92 RDLALPQLARLSDLLGRMKRQQSLLATYSGKAN  124 (126)
T ss_dssp             HHHHHHHHHHHHHHC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999999876787799998702037


No 3  
>2fup_A Hypothetical protein PA3352; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=68.35  E-value=6.2  Score=19.07  Aligned_cols=102  Identities=13%  Similarity=0.083  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCCCHH---
Q ss_conf             89999999999999999988623818999999999999999873058-----------------------8999988---
Q T0602             9 HLLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITI-----------------------SSCSSLM---   62 (123)
Q Consensus         9 ~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~-----------------------~~~l~~~---   62 (123)
                      +-+..|+.+..+-++=..+-..+|.|.|..+-..=..+++.+...+.                       ..+..+.   
T Consensus        14 ~e~~~~~~L~~lL~~e~~aL~~~d~~~L~~l~~~k~~l~~~l~~l~~~R~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~   93 (157)
T 2fup_A           14 EDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARERADGAELLA   93 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             99999999999999999999808999999999999999999999999999999982899882059998734774599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999998648999999999999999999853556789876642
Q T0602            63 LQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNTYGQ  111 (123)
Q Consensus        63 ~q~~~~~lL~~IL~ndaeIr~Llq~rldeL~~li~q~~~q~~l~~aYgq  111 (123)
                      ..+.+..+++++-+-...=..|++..+......+.-.+.+ .-..+||.
T Consensus        94 ~~~~L~~~~~~~~~~N~~N~~Li~~~l~~~~~~l~iL~~~-~~~~~Y~~  141 (157)
T 2fup_A           94 RGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQ-DAPSLYDS  141 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCC
T ss_conf             9999999999999999999999999999999999985769-88889798


No 4  
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=47.15  E-value=14  Score=16.84  Aligned_cols=28  Identities=14%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             9999999999999998862381899999
Q T0602            12 SEYQQILTLSEQMLVLATEGNWDALVDL   39 (123)
Q Consensus        12 ~~Yq~il~lS~~ML~lA~~gdWD~Lv~l   39 (123)
                      +.=|+|..+.++|..+...||||.+..+
T Consensus         9 a~~qeI~~l~~~~~~A~~~~D~d~~~~~   36 (143)
T 2f86_B            9 AQKQDIVRVTQTLLDAISCKDFETYTRL   36 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             4899999999999999985899999876


No 5  
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM kinase) II gamma; transferase, oligomerisation domain, serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=42.56  E-value=17  Score=16.40  Aligned_cols=37  Identities=22%  Similarity=0.480  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             5664178999999999999999998862381899999
Q T0602             3 AMERHQHLLSEYQQILTLSEQMLVLATEGNWDALVDL   39 (123)
Q Consensus         3 ~M~~~~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~l   39 (123)
                      +|....+.-+.-+.|..+.+++..+-..||++.+..+
T Consensus         1 ~~~~~~~~~~~~~eI~~~~~~~~~A~~~~D~~~~~~~   37 (143)
T 2ux0_A            1 SMTEDEDLKVRKQEIIKITEQLIEAINNGDFEAYTKI   37 (143)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             9653544024899999999999999985899899874


No 6  
>3blz_A NTF2-like protein of unknown function; YP_001049020.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Shewanella baltica OS155} SCOP: d.17.4.14
Probab=35.33  E-value=22  Score=15.71  Aligned_cols=35  Identities=11%  Similarity=0.147  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             664178999999999999999998862381899999
Q T0602             4 MERHQHLLSEYQQILTLSEQMLVLATEGNWDALVDL   39 (123)
Q Consensus         4 M~~~~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~l   39 (123)
                      |++. ..++.+++|..+-..-..+-..+|||.|-.+
T Consensus         2 m~~~-~~~~D~~aI~~~~~~Y~~a~d~~D~~~l~~~   36 (128)
T 3blz_A            2 MTNT-TYVQEYHAIVEVLSKYNEGGKKADSTIMRPA   36 (128)
T ss_dssp             --CC-CHHHHHHHHHHHHHHHHHHHHHTCHHHHGGG
T ss_pred             CCCC-CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             8984-5077999999999999999984899899875


No 7  
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli}
Probab=32.81  E-value=24  Score=15.46  Aligned_cols=80  Identities=24%  Similarity=0.267  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             664178999999999999999998862381899999999999----9999873058899998889999999999986489
Q T0602             4 MERHQHLLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLK----AVESTANITISSCSSLMLQDLLREKLRAILDNEI   79 (123)
Q Consensus         4 M~~~~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE~~y~~----~Ve~l~~~~~~~~l~~~~q~~~~~lL~~IL~nda   79 (123)
                      |+....++..-++...+-.+.|--|+.||=.+|..+-.+-..    ++..-+.+..-...+     .++..|.+||++|.
T Consensus         1 mdelrellkaeqqaikiykevlkkakegdeqelarllrEl~K~E~Qa~K~YrEA~E~~~nP-----ek~~Vl~KILEDEE   75 (115)
T 2hz8_A            1 MDELRELLKAEQQAIKIYKEVLKKAKEGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNP-----EKRQVIDKILEDEE   75 (115)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTHHHHHHHHHHHHHHHHHHHHSCCCT-----TTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHH
T ss_conf             9588999998999999999999885026599999999999999999999999999883696-----48789999988489


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q T0602            80 EIKRLLQLR   88 (123)
Q Consensus        80 eIr~Llq~r   88 (123)
                      .--.++++-
T Consensus        76 KHIEWLeaa   84 (115)
T 2hz8_A           76 KHIEWLKAA   84 (115)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999998


No 8  
>3h51_A Putative calcium/calmodulin dependent protein kinase II association domain; NP_636218.1, structural genomics; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=30.30  E-value=27  Score=15.20  Aligned_cols=29  Identities=21%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99999999999999988623818999999
Q T0602            12 SEYQQILTLSEQMLVLATEGNWDALVDLE   40 (123)
Q Consensus        12 ~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE   40 (123)
                      +.-++|..+-+++..+-.++|||.+..+=
T Consensus        17 ~de~eI~al~~~~~~A~~~~D~d~~~~~~   45 (156)
T 3h51_A           17 GEAREVAALFDTWNAALATGNPHKVADLY   45 (156)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCHHHHHTTE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             76999999999999999859999999750


No 9  
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=29.43  E-value=28  Score=15.11  Aligned_cols=38  Identities=16%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986489999999999999999998535567898
Q T0602            69 EKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVN  106 (123)
Q Consensus        69 ~lL~~IL~ndaeIr~Llq~rldeL~~li~q~~~q~~l~  106 (123)
                      ..|-++|.-|+++|..=+-|.-.|.+-+..-.+-+.++
T Consensus         9 ~aI~~VL~RDaeLk~~Ee~RV~kL~~t~~D~~~lk~lt   46 (59)
T 3bc1_B            9 EAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMS   46 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999998629998848778999987117899996123


No 10 
>2r4i_A Uncharacterized protein; YP_678039.1, NTF2-like protein of unknown function, structural genomics; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=26.17  E-value=31  Score=14.75  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             9999999999999886238189999999
Q T0602            14 YQQILTLSEQMLVLATEGNWDALVDLEM   41 (123)
Q Consensus        14 Yq~il~lS~~ML~lA~~gdWD~Lv~lE~   41 (123)
                      =+.|..+..++.+|...+|++.+.++=.
T Consensus         5 ~~~I~~~~~~~~~A~~~~D~~~l~~l~~   32 (123)
T 2r4i_A            5 RDVILDCEKKLLTAIQNNDVESLEVLLH   32 (123)
T ss_dssp             HHHHTHHHHHHHHHHHHTCHHHHHHHEE
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999999999998699999997504


No 11 
>3e4x_A APC36150; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus} PDB: 3gor_A
Probab=21.57  E-value=39  Score=14.21  Aligned_cols=50  Identities=14%  Similarity=0.223  Sum_probs=36.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH---------------HHHHHHHHHHHHHHHH
Q ss_conf             9756641789999999999999999988623818---------------9999999999999998
Q T0602             1 SNAMERHQHLLSEYQQILTLSEQMLVLATEGNWD---------------ALVDLEMTYLKAVEST   50 (123)
Q Consensus         1 ~~~M~~~~~ll~~Yq~il~lS~~ML~lA~~gdWD---------------~Lv~lE~~y~~~Ve~l   50 (123)
                      ||+|+....++..|+..-..+.+.++.--..+|+               .++..+..+...+..-
T Consensus         1 ~~~m~~~~~~i~~~~~~r~~~~~~l~~l~~e~l~~~p~~~~~Si~~ll~Hi~~~~~~~~~~~~~~   65 (157)
T 3e4x_A            1 SNAMSRAKKWVQYFLSHRHVTMELIHKIDEAHYDYKPTPTSMTAKQLATHMLFSFYNFANTAKHG   65 (157)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHTCCGGGTTCCSSTTSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99787999999999999999999998199999378889988779999999998888999987276


No 12 
>2rfr_A Uncharacterized protein; YP_001166107.1, structural genomics, joint center for structural genomics, JCSG; 1.16A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=21.47  E-value=39  Score=14.20  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             41789999999999999999988623818999999
Q T0602             6 RHQHLLSEYQQILTLSEQMLVLATEGNWDALVDLE   40 (123)
Q Consensus         6 ~~~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE   40 (123)
                      ..-.-|..-++|..+......+...+|||.+.++=
T Consensus        10 ~rl~~led~~aI~~l~~~y~~~~D~~d~~~~~~lF   44 (155)
T 2rfr_A           10 ARLRLLEDREEIRELIARYGPLADSGDAEALSELW   44 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf             99999999999999999999998289999998744


Done!