Query T0602 3NKZ, Yersinia enterocolitica, 123 residues
Match_columns 123
No_of_seqs 89 out of 91
Neff 5.6
Searched_HMMs 15564
Date Mon Jul 5 08:58:32 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0602.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0602.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dova_ a.24.9.1 (A:) alpha-ca 35.2 15 0.00098 15.7 8.6 88 8-114 7-101 (181)
2 d2f86b1 d.17.4.7 (B:343-471) A 30.7 18 0.0012 15.2 3.8 27 13-39 7-33 (129)
3 d2r4ia1 d.17.4.15 (A:1-122) Un 27.4 21 0.0013 14.9 3.3 27 14-40 4-30 (122)
4 d1s5aa_ d.17.4.10 (A:) Hypothe 25.6 18 0.0012 15.2 1.9 29 12-40 2-30 (139)
5 d2a0ba_ a.24.10.1 (A:) Aerobic 23.5 25 0.0016 14.4 3.1 34 9-42 26-60 (118)
6 d3cu3a1 d.17.4.28 (A:9-170) Un 22.2 26 0.0017 14.3 3.3 29 12-40 4-32 (162)
7 d2je8a2 b.1.4.1 (A:784-864) Be 17.6 20 0.0013 15.0 0.7 15 108-122 37-53 (81)
8 d3blza1 d.17.4.14 (A:3-126) Un 16.1 36 0.0023 13.4 4.1 31 9-39 3-33 (124)
9 d1ug7a_ a.24.24.1 (A:) Domain 15.0 38 0.0025 13.3 2.6 42 10-57 15-56 (128)
10 d1q8ha_ g.32.1.1 (A:) Osteocal 14.5 39 0.0025 13.2 2.7 33 75-115 4-36 (37)
No 1
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.18 E-value=15 Score=15.69 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_conf 789999999999999999988623818999999999999999873058899998889999999999-----986489999
Q T0602 8 QHLLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRA-----ILDNEIEIK 82 (123)
Q Consensus 8 ~~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~q~~~~~lL~~-----IL~ndaeIr 82 (123)
+++...++.+..-++.|..+|.. +..-+.+++--...-.-.+.+|.. |+++..+||
T Consensus 7 ~em~~A~~~v~~ag~~l~~aa~~-------------------~~~dp~s~~~R~~lv~aaR~lLs~vt~lLllaD~~~Vr 67 (181)
T d1dova_ 7 EELVVAVEDVRKQGDLMKSAAGE-------------------FADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVY 67 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998-------------------75299976769999999999999999999999999999
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999--9999999853556789876642479
Q T0602 83 RLLQLRL--DRLSDLVGQSTKQQAVNNTYGQFPD 114 (123)
Q Consensus 83 ~Llq~rl--deL~~li~q~~~q~~l~~aYgqf~~ 114 (123)
.++...- .+--..+........+...|.+|+.
T Consensus 68 ~il~~~~~v~~~l~~le~v~s~~el~~~~~~f~~ 101 (181)
T d1dova_ 68 KLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKP 101 (181)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999971789999999999779
No 2
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}
Probab=30.69 E-value=18 Score=15.24 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999999998862381899999
Q T0602 13 EYQQILTLSEQMLVLATEGNWDALVDL 39 (123)
Q Consensus 13 ~Yq~il~lS~~ML~lA~~gdWD~Lv~l 39 (123)
.=++|..+.+++..+-..||||.+..+
T Consensus 7 ~~~eI~~~~~~~~~A~~~~D~~~~~~~ 33 (129)
T d2f86b1 7 QKQDIVRVTQTLLDAISCKDFETYTRL 33 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 899999999999999984899899875
No 3
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}
Probab=27.40 E-value=21 Score=14.89 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999999999988623818999999
Q T0602 14 YQQILTLSEQMLVLATEGNWDALVDLE 40 (123)
Q Consensus 14 Yq~il~lS~~ML~lA~~gdWD~Lv~lE 40 (123)
=+.|+.+..++..|-.++|++.+.++=
T Consensus 4 ~~~I~~~~~~~~~A~~~~D~~~l~~l~ 30 (122)
T d2r4ia1 4 RDVILDCEKKLLTAIQNNDVESLEVLL 30 (122)
T ss_dssp HHHHTHHHHHHHHHHHHTCHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999999878999998640
No 4
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}
Probab=25.62 E-value=18 Score=15.23 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999999999988623818999999
Q T0602 12 SEYQQILTLSEQMLVLATEGNWDALVDLE 40 (123)
Q Consensus 12 ~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE 40 (123)
+.|+.-..+-++++++-.++|||.+.++=
T Consensus 2 ~~~~~~~e~v~~~~~a~~~~D~~~~~~l~ 30 (139)
T d1s5aa_ 2 NEFEKACETLRKFMAYMLEKDMKSWTELW 30 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHTTE
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 70789999999999999867999999872
No 5
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=23.47 E-value=25 Score=14.44 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=19.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 89999999-99999999998862381899999999
Q T0602 9 HLLSEYQQ-ILTLSEQMLVLATEGNWDALVDLEMT 42 (123)
Q Consensus 9 ~ll~~Yq~-il~lS~~ML~lA~~gdWD~Lv~lE~~ 42 (123)
.++..|.. +-..-..|-.+...+||+.+...--.
T Consensus 26 ~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~ 60 (118)
T d2a0ba_ 26 DGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHK 60 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999869999999999887799999999999
No 6
>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}
Probab=22.21 E-value=26 Score=14.29 Aligned_cols=29 Identities=14% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999999999988623818999999
Q T0602 12 SEYQQILTLSEQMLVLATEGNWDALVDLE 40 (123)
Q Consensus 12 ~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE 40 (123)
+..++|.++-+++..+...||+|.+.++=
T Consensus 4 sDe~aI~al~~~~~~A~~~~D~d~~~~l~ 32 (162)
T d3cu3a1 4 ADESAIRAFHRQMIDAWNRGSGEGFAAPF 32 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 89999999999999999878999999863
No 7
>d2je8a2 b.1.4.1 (A:784-864) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=17.61 E-value=20 Score=14.99 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=11.4
Q ss_pred HHHHCCCCC--CCCCCC
Q ss_conf 664247984--478989
Q T0602 108 TYGQFPDHA--LLLGET 122 (123)
Q Consensus 108 aYgqf~~~~--l~~~~~ 122 (123)
.-|+||||- |+||++
T Consensus 37 ~~g~fSDN~FdL~Pg~~ 53 (81)
T d2je8a2 37 QGARYSDNFFDLLPGER 53 (81)
T ss_dssp TTCEESCCSEEECTTCC
T ss_pred CCCEEECCEEEECCCCE
T ss_conf 69668067687659977
No 8
>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622 {Shewanella baltica [TaxId: 62322]}
Probab=16.06 E-value=36 Score=13.44 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 8999999999999999998862381899999
Q T0602 9 HLLSEYQQILTLSEQMLVLATEGNWDALVDL 39 (123)
Q Consensus 9 ~ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~l 39 (123)
..++.+++|..+...-..+...|||+.|..+
T Consensus 3 t~l~d~~aI~~li~~Y~~~~d~~D~~~l~~~ 33 (124)
T d3blza1 3 TYVQEYHAIVEVLSKYNEGGKKADSTIMRPA 33 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 3068999999999999999886899999976
No 9
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.00 E-value=38 Score=13.27 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999998862381899999999999999987305889
Q T0602 10 LLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITISS 57 (123)
Q Consensus 10 ll~~Yq~il~lS~~ML~lA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~ 57 (123)
++.-|.+- .....-=..|-.||+--.+|-.++..|......+
T Consensus 15 ~l~kW~a~------~~kgtdFDsWGQlvEA~dEY~~larqL~K~~~~q 56 (128)
T d1ug7a_ 15 LLQRWGAS------LRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQ 56 (128)
T ss_dssp HHHHHHHH------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHH------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999888------7632684217899999988889999999987401
No 10
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.51 E-value=39 Score=13.19 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 86489999999999999999998535567898766424798
Q T0602 75 LDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNTYGQFPDH 115 (123)
Q Consensus 75 L~ndaeIr~Llq~rldeL~~li~q~~~q~~l~~aYgqf~~~ 115 (123)
|+.-++|.. +.|-.|+|..-|| ...||.+|-|.
T Consensus 4 le~krevce-lnpdcdelad~ig-------fqeayrrfyg~ 36 (37)
T d1q8ha_ 4 LEPRREVCE-LNPDCDELADHIG-------FQEAYRRFYGI 36 (37)
T ss_dssp THHHHHHHH-HSHHHHHHHHHHC-------HHHHHHHHHSC
T ss_pred CCCHHHHHH-CCCCHHHHHHHHH-------HHHHHHHHHCC
T ss_conf 411024671-4988799998754-------89999998255
Done!