Query T0603 CRISPR associated protein Cas1 , E.coli, 305 residues Match_columns 305 No_of_seqs 207 out of 468 Neff 6.3 Searched_HMMs 22458 Date Mon Jul 5 09:02:21 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0603.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0603.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3god_A CAS1; crispr, metallonu 100.0 0 0 521.1 26.4 269 5-278 12-327 (328) 2 3lfx_A Uncharacterized protein 100.0 0 0 369.6 23.2 237 15-256 1-276 (319) 3 2yzs_A Putative uncharacterize 100.0 0 0 359.9 28.2 254 17-275 3-303 (315) 4 1jqo_A Phosphoenolpyruvate car 58.4 0.73 3.2E-05 24.0 -1.7 46 156-201 221-273 (970) 5 2hbp_A Cytoskeleton assembly c 48.5 12 0.00051 16.2 4.3 31 20-50 17-47 (68) 6 2ioj_A Hypothetical protein AF 47.3 12 0.00054 16.1 3.4 54 28-81 51-107 (139) 7 2cev_A Protein (arginase); enz 42.4 14 0.00064 15.6 3.3 33 51-83 92-126 (299) 8 1xfk_A Formimidoylglutamase; f 38.6 16 0.00073 15.2 3.4 34 50-83 119-161 (336) 9 1jqn_A Pepcase, PEPC, phosphoe 38.5 1.1 5E-05 22.8 -3.4 33 158-190 184-216 (883) 10 2wdq_A Succinate dehydrogenase 37.5 17 0.00076 15.1 2.8 43 35-79 184-237 (588) 11 1d4d_A Flavocytochrome C fumar 35.7 18 0.00081 14.9 2.9 38 44-82 122-159 (572) 12 1pq3_A Arginase II, mitochondr 34.7 19 0.00083 14.8 3.7 33 51-83 90-124 (306) 13 3m1r_A Formimidoylglutamase; s 31.2 21 0.00095 14.5 2.9 31 52-82 124-156 (322) 14 2a0m_A Arginase superfamily pr 30.7 22 0.00097 14.4 3.6 34 50-83 114-150 (316) 15 2ef5_A Arginase; TTHA1496, str 30.4 22 0.00098 14.4 3.7 32 51-82 89-121 (290) 16 1gq6_A Proclavaminate amidino 29.3 23 0.001 14.3 2.5 32 51-82 114-147 (313) 17 2aeb_A Arginase 1; hydrolase, 27.7 25 0.0011 14.1 4.0 34 50-83 93-128 (322) 18 1woh_A Agmatinase; alpha/beta 27.2 21 0.00092 14.6 1.6 31 52-82 115-146 (305) 19 3cs3_A Sugar-binding transcrip 23.4 29 0.0013 13.6 4.8 50 31-81 40-89 (277) 20 1y0p_A Fumarate reductase flav 21.6 32 0.0014 13.4 3.1 39 43-82 121-159 (571) 21 2nml_A Enhancer of rudimentary 20.2 28 0.0012 13.7 1.1 17 210-226 45-61 (104) No 1 >3god_A CAS1; crispr, metallonuclease, DNAse, prokaryotic immune system, immune system; 2.17A {Pseudomonas aeruginosa} Probab=100.00 E-value=0 Score=521.07 Aligned_cols=269 Identities=23% Similarity=0.352 Sum_probs=244.8 Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCEE---EECCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCC Q ss_conf 7522302047526888743899857789998768657---8616100356686177303688999999759889998898 Q T0603 5 PLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIR---THIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEA 81 (305) Q Consensus 5 p~~~i~~~dr~s~lYle~g~i~~~~~~l~i~~~~g~~---~~IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~ 81 (305) ++|+|||+||+++||+|+|+|.++||++++++++|.. ++||+++|++|+|+|||+|||+||++|+++||+|+|||++ T Consensus 12 ~~~~i~~~~r~~~lyle~~~l~~~~~~~~~~~~~g~~~~~~~IPi~~v~~Ill~~g~siS~~al~~la~~gi~v~f~~~~ 91 (328) T 3god_A 12 ELKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGRHSHYWNIPIANTTSLLLGTGTSITQAAMRELARAGVLVGFCGGG 91 (328) T ss_dssp HHHHHHHHTCCEEEEECSEEEEEETTEEEEEEEETTEEEEEECCGGGEEEEEECTTEEEEHHHHHHHHHTTCEEEEECST T ss_pred HCCHHHHHHCCCEEEEEEEEEEEECCEEEEEECCCCCEEEEEECHHHCCEEEECCCCEECHHHHHHHHHCCCEEEEECCC T ss_conf 50053253012179998659999789899997488600368725788658997399657699999999869879998899 Q ss_pred CCEEEECC-----------CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC----------------------- Q ss_conf 70655127-----------77764089999999983598899999999999751001----------------------- Q T0603 82 GVRVYASG-----------QPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEP----------------------- 127 (305) Q Consensus 82 G~~~y~~~-----------~~~~~~~~~l~~Q~~~~~d~~~RL~vAR~m~~~R~~~~----------------------- 127 (305) |+|+|+.. +..++++.++++|+++|+|+++||.+||+||..|+.+. T Consensus 92 G~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~Q~~~~~d~~~rl~iAr~~v~~ki~n~~~~l~~~~~~r~~~~~~~~~~~~ 171 (328) T 3god_A 92 GTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERIRHSWLEDRVLRDAGFAVDATALA 171 (328) T ss_dssp TCCSEEETTEEESEEEEEESSSCCCSHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCCCCHHHHH T ss_pred CCEEEEECCCCCCCCEECCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 82667732477776422445530217999999998359788999999999999998999998888876402354679999 Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf ---------42341089885167999999999999871885345247888888565366899999999999999999970 Q T0603 128 ---------APARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAA 198 (305) Q Consensus 128 ---------~~~~~sie~LrG~EG~~ar~yy~~~a~~~~~~~~gR~~~r~~~~~~DpvNa~LS~gyslLy~~~~~aI~~~ 198 (305) ++...++++|||+||+++|.||+.+++.++.+|++| ++++|+.||+|++|||||+|||+.|++||+++ T Consensus 172 ~~l~~~~~~l~~~~~~~~LrG~EG~aak~Yf~~~~~~~~~~~f~r---r~r~p~~DpvNa~Ls~gYtlLy~~v~~Al~~~ 248 (328) T 3god_A 172 VAVEDSARALEQAPNHEHLLTEEARLSKRLFKLAAQATRYGEFVR---AKRGSGGDPANRFLDHGNYLAYGLAATATWVL 248 (328) T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHTTCCSCCC---CSTTCCCSHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999998761798889999999999999999876233576677---78899997477999999999999999999974 Q ss_pred CCCCCCEEEECCCCC-CEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 888431256648987-5130005553356667899998614877724899999999998620789999999998368877 Q T0603 199 GYAPAIGFVHTGKPL-SFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEI 277 (305) Q Consensus 199 Gl~P~lGflH~g~~~-Slv~DiADlfK~~i~~p~aF~~~~~~~~~~e~~~R~~~r~~~~~~~~l~~~i~~i~~ll~~~~~ 277 (305) ||||++||+|++..+ ||||||||+|||++|+|+||++++++ ++|+++|++||+.|++.+++++||++||+++..... T Consensus 249 GLdP~lGflH~~~~r~SLvlDladlfK~~iv~p~aF~~~~~~--~~~~~~R~~~~~~~~~~~~~~~m~~~l~~~~~~~~~ 326 (328) T 3god_A 249 GIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAMRG--DEEQDFRQACLDNLSRAQALDFMIDTLKDVAQRSTV 326 (328) T ss_dssp TCCTTCCSSSTTTCTTHHHHHHHTTTTTTTHHHHHHHHHHHT--CCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTC T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCHHHCCHHHHHHHHCC--CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC T ss_conf 999761233589998644887898721020169899998638--935999999999999703499999999999740136 Q ss_pred C Q ss_conf 7 Q T0603 278 Q 278 (305) Q Consensus 278 ~ 278 (305) + T Consensus 327 ~ 327 (328) T 3god_A 327 S 327 (328) T ss_dssp - T ss_pred C T ss_conf 8 No 2 >3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system, structural genomics, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima} Probab=100.00 E-value=0 Score=369.62 Aligned_cols=237 Identities=19% Similarity=0.225 Sum_probs=204.9 Q ss_pred CCEEEE-EEEEEEEECCEEEEEECCCEEEECCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCCCEEEECCCCC- Q ss_conf 526888-743899857789998768657861610035668617730368899999975988999889870655127777- Q T0603 15 VSMIFL-QYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPG- 92 (305) Q Consensus 15 ~s~lYl-e~g~i~~~~~~l~i~~~~g~~~~IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G~~~y~~~~~~- 92 (305) |+.||+ ++|+|.+++|++++.+++++ ..||+++|+.|+++|+++||++||+.|+++||+|+||+++|.+.+...++. T Consensus 1 M~tlyi~~~g~l~~~~~~l~i~~~~~~-~~iP~~~i~~ivi~g~v~ist~al~~l~~~~I~v~f~~~~G~~~g~~~p~~~ 79 (319) T 3lfx_A 1 MESVYLFSSGTLKRKANTICLETESGR-KYIPVENVMDIKVFGEVDLNKRFLEFLSQKRIPIHFFNREGYYVGTFYPREY 79 (319) T ss_dssp CEEEEECSCEEEEECSSEEEEECSSCE-EEEECTTEEEEEECSCEEEEHHHHHHHHHTTCCEEEECTTCCEEEEEEECCS T ss_pred CCEEEECCCCEEEEECCEEEEEECCCE-EEECHHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCC T ss_conf 923997738589998898999978953-8876788488999689718899999999879979999999978999946778 Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 640899999999835988999999999997510--------------------014234108988516799999999999 Q T0603 93 GARSDKLLYQAKLALDEDLRLKVVRKMFELRFG--------------------EPAPARRSVEQLRGIEGSRVRATYALL 152 (305) Q Consensus 93 ~~~~~~l~~Q~~~~~d~~~RL~vAR~m~~~R~~--------------------~~~~~~~sie~LrG~EG~~ar~yy~~~ 152 (305) ..++.++++|++.|.|+++|+.+||+|+..|+. +++.++.++++|||+||.+++.||..+ T Consensus 80 ~~~~~~~~~Q~~~~~~~~~~l~iar~ii~~Ki~Nq~~~L~~~~~~~~~l~~~~~~l~~~~~~~~L~giEG~aa~~Yf~~l 159 (319) T 3lfx_A 80 LNSGFLILKQAEHYINQEKRMLIAREIVSRSFQNMVDFLKKRKVRADSLTRYKKKAEEASNVSELMGIEGNAREEYYSMI 159 (319) T ss_dssp CCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSSHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 87599999999983295889999999999999999999998315368999999986617999999888999999999999 Q ss_pred HHHHC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC--CEEECCHHHHHHHH Q ss_conf 98718---85345247888888565366899999999999999999970888431256648987--51300055533566 Q T0603 153 AKQYG---VTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPL--SFVYDIADIIKFDT 227 (305) Q Consensus 153 a~~~~---~~~~gR~~~r~~~~~~DpvNa~LS~gyslLy~~~~~aI~~~Gl~P~lGflH~g~~~--Slv~DiADlfK~~i 227 (305) ++.+. +.|.+| +++||.||+|++|||||++||+.|.++|+++||||++||+|+++++ |||||++|+|||.+ T Consensus 160 ~~~l~~~~~~f~~R----~~rpp~DpvNa~LsygY~lL~~~~~~al~~~GLdP~iG~lH~~~~~r~sLa~DL~E~fRp~i 235 (319) T 3lfx_A 160 DSLVSDERFRIEKR----TRRPPKNFANTLISFGNSLLYTTVLSLIYQTHLDPRIGYLHETNFRRFSLNLDIAELFKPAV 235 (319) T ss_dssp CCCCSSCC------------CCCCSHHHHHHHHHHHHHHHHHHHHHHTSSCCTTCCSSSCCCSSSCCHHHHHHHHHHHHH T ss_pred HHHCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 98547556787887----77999988999999999999999999999839997754013799999407887898841376 Q ss_pred HHHHHHHHHHCCCCCHH------------HHHHHHHHHHHH Q ss_conf 67899998614877724------------899999999998 Q T0603 228 VVPKAFEIARRNPGEPD------------REVRLACRDIFR 256 (305) Q Consensus 228 ~~p~aF~~~~~~~~~~e------------~~~R~~~r~~~~ 256 (305) ||.++|.+++++..+++ .+.|+.+.+.|. T Consensus 236 VD~~v~~l~~~~~i~~~dF~~~~~g~~L~~~~rk~~i~~~~ 276 (319) T 3lfx_A 236 VDRLFLNLVNTRQINEKHFDEISEGLMLNDEGKSLFVKNYE 276 (319) T ss_dssp THHHHHHHHTTTCSCGGGEECCSSSCEECHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHCCCCCCEEEECHHHHHHHHHHHH T ss_conf 99999999972898888731457828988899999999999 No 3 >2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus} Probab=100.00 E-value=0 Score=359.93 Aligned_cols=254 Identities=16% Similarity=0.154 Sum_probs=215.2 Q ss_pred EEEE-EEEEEEEECCEEEEEECCCEEEECCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCCCEEEECCCCC-CC Q ss_conf 6888-743899857789998768657861610035668617730368899999975988999889870655127777-64 Q T0603 17 MIFL-QYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPG-GA 94 (305) Q Consensus 17 ~lYl-e~g~i~~~~~~l~i~~~~g~~~~IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G~~~y~~~~~~-~~ 94 (305) .+|+ ++|+|.++++++++++++++ ..||+++|+.|+++|+++||++||+.|+++||+|+||+++|.+.+...++. +. T Consensus 3 t~yi~~~g~l~~~~~~l~i~~~~~~-~~iP~~~I~~ivi~g~~~ist~al~~l~~~gI~v~f~~~~G~~~g~~~p~~~~~ 81 (315) T 2yzs_A 3 VYYINSHGTLSRHENTLRFENAEVK-KDIPVEDVEEIFVFAELSLNTKLLNFLASKGIPLHFFNYYGYYTGTFYPRESSV 81 (315) T ss_dssp EEEECSCEEEEEETTEEEEECSSCE-EEECGGGCSEEEECSCEEEEHHHHHHHHHHTCCEEEECTTSCEEEEEEECCSCC T ss_pred EEEEECCCEEEEECCEEEEEECCEE-EEECHHHCCEEEEECCCEECHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCC T ss_conf 6999138389997899999979989-997168847899958970789999999987997999899997857836866786 Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 0899999999835988999999999997510--------------01423410898851679999999999998718853 Q T0603 95 RSDKLLYQAKLALDEDLRLKVVRKMFELRFG--------------EPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTW 160 (305) Q Consensus 95 ~~~~l~~Q~~~~~d~~~RL~vAR~m~~~R~~--------------~~~~~~~sie~LrG~EG~~ar~yy~~~a~~~~~~~ 160 (305) ++..+++|++++.|+++++.+||+|+..++. +++....++++|||+||.+++.||..+++.+++.| T Consensus 82 ~~~~~~~Q~~~~~~~~~~l~ia~~iv~~Ki~Nq~~~l~~~~~~~~~~~~~~~~i~~l~g~Eg~aa~~Yf~~~~~~~~~~f 161 (315) T 2yzs_A 82 SGHLLIKQVEHYLDAQKRLYLAKSFVIGSILNLEYVYKISADTYLNKVKETNSIPELMSVEAEFRKLCYKKLEEVTGWEL 161 (315) T ss_dssp CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 79999999998119899999999999999999999999878998888764047889999999999999999998469888 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC--CEEECCHHHHHHHHHHHHHHHHHHC Q ss_conf 45247888888565366899999999999999999970888431256648987--5130005553356667899998614 Q T0603 161 NGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPL--SFVYDIADIIKFDTVVPKAFEIARR 238 (305) Q Consensus 161 ~gR~~~r~~~~~~DpvNa~LS~gyslLy~~~~~aI~~~Gl~P~lGflH~g~~~--Slv~DiADlfK~~i~~p~aF~~~~~ 238 (305) ++|.++ ||.||+|++|||||++||+.|.++|+++||||++||+|+++++ |||||++|+|||.+|+.++|+++++ T Consensus 162 ~~R~rr----pp~DpvNa~LsygY~lL~~~i~~ai~~~GLdP~iG~lH~~~~~r~sLa~DL~E~fRp~ivD~~v~~l~~~ 237 (315) T 2yzs_A 162 EKRTKR----PPQNPLNALISFGNSLTYAKVLGEIYKTQLNPTVSYLHEPSTKRFSLSLDVAEVFKPIFVDNLIIRLIQE 237 (315) T ss_dssp C---------CCCSHHHHHHHHHHHHHHHHHHHHHHTSSCCTTCCSSSCCC--CCHHHHHHHHHHHHHHTHHHHHHHHHT T ss_pred CCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 886728----9998789999999999999999999984999764232469999962898889884369799999999871 Q ss_pred CCCCHH------------HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCCC Q ss_conf 877724------------89999999999862-----------------07899999999983688 Q T0603 239 NPGEPD------------REVRLACRDIFRSS-----------------KTLAKLIPLIEDVLAAG 275 (305) Q Consensus 239 ~~~~~e------------~~~R~~~r~~~~~~-----------------~~l~~~i~~i~~ll~~~ 275 (305) +..+++ .+.|+.+...|.+. +++..-+..+..-|..+ T Consensus 238 ~~i~~~dF~~~~~~~~L~~~~rk~~i~~~e~~l~~~i~~~~~~~~~s~~~~i~~qa~~l~~~l~~~ 303 (315) T 2yzs_A 238 NKIDKTHFSTELNMTFLNEIGRKVFLKAFNELLETTIFYPKLNRKVSHRTLIKLELYKLIKHLLEE 303 (315) T ss_dssp TSSCGGGEEEETTEEEECHHHHHHHHHHHHHHHHCEEEEGGGTEEEEHHHHHHHHHHHHHHHHTTS T ss_pred CCCCHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 898877740207808888999999999999997423015567840229999999999999997499 No 4 >1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Probab=58.41 E-value=0.73 Score=24.03 Aligned_cols=46 Identities=7% Similarity=0.011 Sum_probs=30.6 Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHCCCC Q ss_conf 188534524788888856536689999999-------9999999999970888 Q T0603 156 YGVTWNGRRYDPKDWEKGDTINQCISAATS-------CLYGVTEAAILAAGYA 201 (305) Q Consensus 156 ~~~~~~gR~~~r~~~~~~DpvNa~LS~gys-------lLy~~~~~aI~~~Gl~ 201 (305) ...-|.....++.++.+.|.+...|+|-.. -+|.....++...+.+ T Consensus 221 I~~LW~T~elR~~KPtv~DE~~ngL~y~~~tl~~avP~l~~~l~~al~~~~~~ 273 (970) T 1jqo_A 221 IQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGIN 273 (970) T ss_dssp HHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHTTTCC T ss_pred HHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99986642331259898999999999999999999999999999999863888 No 5 >2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae} Probab=48.47 E-value=12 Score=16.21 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=26.5 Q ss_pred EEEEEEEEECCEEEEEECCCEEEECCCCCCC Q ss_conf 8743899857789998768657861610035 Q T0603 20 LQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA 50 (305) Q Consensus 20 le~g~i~~~~~~l~i~~~~g~~~~IPi~~i~ 50 (305) +|---|...++.+.+...+|....||++.++ T Consensus 17 veA~fv~~~~~~V~L~~~nG~~i~vpl~~LS 47 (68) T 2hbp_A 17 VDAEFIGCAKGKIHLHKANGVKIAVAADKLS 47 (68) T ss_dssp EEEEEEEEETTEEEEECTTSCEEEEETTSBC T ss_pred EEEEEEEEECCEEEEEECCCEEEEEEHHHCC T ss_conf 9999999869999999739979996859979 No 6 >2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2 Probab=47.30 E-value=12 Score=16.10 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=38.1 Q ss_pred ECCEEEEEECCCEEEECCC---CCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCC Q ss_conf 5778999876865786161---00356686177303688999999759889998898 Q T0603 28 IDGAFVLIDKTGIRTHIPV---GSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEA 81 (305) Q Consensus 28 ~~~~l~i~~~~g~~~~IPi---~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~ 81 (305) .++.+++...+-....... ..+++|+|-+|..++...++.+-+.|++|.-+..+ T Consensus 51 ~~~~lvv~~gdR~di~l~al~~~~~~~iIlTgg~~p~~~i~~la~~~gipvl~t~~d 107 (139) T 2ioj_A 51 ARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHD 107 (139) T ss_dssp CSSEEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSC T ss_pred CCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCC T ss_conf 897189995883899999985789619999499997999999998679948993788 No 7 >2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A* Probab=42.40 E-value=14 Score=15.61 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.9 Q ss_pred EEEECCCCEECHHHHHHHHHC--CCEEEEECCCCC Q ss_conf 668617730368899999975--988999889870 Q T0603 51 CIMLEPGTRVSHAAVRLAAQV--GTLLVWVGEAGV 83 (305) Q Consensus 51 ~IlL~~gvsIT~~al~~la~~--Gi~V~f~g~~G~ 83 (305) .|+|||..++|-+.++.+++. .+.|+|++.+.- T Consensus 92 pi~lGGdHsit~~~~~a~~~~~~~~~vI~~DAH~D 126 (299) T 2cev_A 92 PLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGD 126 (299) T ss_dssp EEEEESSGGGHHHHHHHHHTTCSSEEEEEESSBCC T ss_pred EEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCC T ss_conf 68825776413343211010377604998503577 No 8 >1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1 Probab=38.61 E-value=16 Score=15.24 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=28.2 Q ss_pred CEEEECCCCEECHHHHHHHHH---------CCCEEEEECCCCC Q ss_conf 566861773036889999997---------5988999889870 Q T0603 50 ACIMLEPGTRVSHAAVRLAAQ---------VGTLLVWVGEAGV 83 (305) Q Consensus 50 ~~IlL~~gvsIT~~al~~la~---------~Gi~V~f~g~~G~ 83 (305) -.|+|||+.|||-..++.+.+ ..+.|+|++.+.- T Consensus 119 ~pIvLGGdHsit~~~~~gl~~~~~~~~~~~~~igvI~fDAH~D 161 (336) T 1xfk_A 119 RAIVLGGGHEIAWATFQGLAQHFLATGVKQPRIGIINFDAHFD 161 (336) T ss_dssp CEEEECSSTTHHHHHHHHHHHHHHHTTCCSCCEEEEEECSSCC T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC T ss_conf 6389778766622778999986221014578557999646533 No 9 >1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Probab=38.46 E-value=1.1 Score=22.83 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=18.8 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 853452478888885653668999999999999 Q T0603 158 VTWNGRRYDPKDWEKGDTINQCISAATSCLYGV 190 (305) Q Consensus 158 ~~~~gR~~~r~~~~~~DpvNa~LS~gyslLy~~ 190 (305) .-|.....++.++.+.|.+...|+|--..++.. T Consensus 184 ~LW~T~elR~~KPtv~DE~~~~l~y~~~~l~~~ 216 (883) T 1jqn_A 184 QSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQG 216 (883) T ss_dssp HHHHCCCBCSSCCCHHHHHHHHHHHHHHTHHHH T ss_pred HHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 984671220149999999999999878899998 No 10 >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* Probab=37.50 E-value=17 Score=15.13 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=24.8 Q ss_pred EECCCEEEECCCCCCCEEEECCCCE-----------ECHHHHHHHHHCCCEEEEEC Q ss_conf 8768657861610035668617730-----------36889999997598899988 Q T0603 35 IDKTGIRTHIPVGSVACIMLEPGTR-----------VSHAAVRLAAQVGTLLVWVG 79 (305) Q Consensus 35 ~~~~g~~~~IPi~~i~~IlL~~gvs-----------IT~~al~~la~~Gi~V~f~g 79 (305) ..++|+...|... ++||--||.. .|...+....+.|..+.=+. T Consensus 184 ~~~~g~~~~i~Ak--aVILATGG~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~mE 237 (588) T 2wdq_A 184 CIETGEVVYFKAR--ATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDME 237 (588) T ss_dssp ETTTCCEEEEEEE--EEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEECTT T ss_pred ECCCCCEEEEECC--EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC T ss_conf 8789978999558--19989999841676635899873199999997797164884 No 11 >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Probab=35.73 E-value=18 Score=14.95 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.2 Q ss_pred CCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCC Q ss_conf 161003566861773036889999997598899988987 Q T0603 44 IPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG 82 (305) Q Consensus 44 IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G 82 (305) -|-+++++|++|+|.+=..+|++ |+++|..|+.+.... T Consensus 122 ~~~~ttDVvVVGgG~AGL~AAi~-aae~G~~V~llEK~~ 159 (572) T 1d4d_A 122 GVKETTDVVIIGSGGAGLAAAVS-ARDAGAKVILLEKEP 159 (572) T ss_dssp CCCEECSEEEECCSHHHHHHHHH-HHSSSCCEEEECSSS T ss_pred CCCCCCCEEEECCCHHHHHHHHH-HHHCCCCEEEEECCC T ss_conf 88988577998957999999999-998899589997899 No 12 >1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1 Probab=34.75 E-value=19 Score=14.85 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.6 Q ss_pred EEEECCCCEECHHHHHHHHHC--CCEEEEECCCCC Q ss_conf 668617730368899999975--988999889870 Q T0603 51 CIMLEPGTRVSHAAVRLAAQV--GTLLVWVGEAGV 83 (305) Q Consensus 51 ~IlL~~gvsIT~~al~~la~~--Gi~V~f~g~~G~ 83 (305) .|+|||..++|-..++.+++. .+.|+|++.+.- T Consensus 90 pivlGGdHsis~~~~~a~~~~~~~~~vi~~DAH~D 124 (306) T 1pq3_A 90 CVTLGGDHSLAIGTISGHARHCPDLCVVWVDAHAD 124 (306) T ss_dssp EEEEESSGGGHHHHHHHHHTTCTTCEEEEECSSCC T ss_pred EEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCC T ss_conf 26745787654004899997478625999850366 No 13 >3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis} Probab=31.23 E-value=21 Score=14.48 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=13.4 Q ss_pred EEECCCCEECHHHHHHHHH--CCCEEEEECCCC Q ss_conf 6861773036889999997--598899988987 Q T0603 52 IMLEPGTRVSHAAVRLAAQ--VGTLLVWVGEAG 82 (305) Q Consensus 52 IlL~~gvsIT~~al~~la~--~Gi~V~f~g~~G 82 (305) |+|||..++|-..++.+++ ..+.|+|++.+. T Consensus 124 ivLGGdhsit~~~~~al~~~~~~i~vI~~DAH~ 156 (322) T 3m1r_A 124 LILGGDNSISYSTIKAIAQTKGTTAVIQFDAHH 156 (322) T ss_dssp EEEESCTTHHHHHHHHHHHHHCSEEEEEECSSC T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 998387411478898886126884089986588 No 14 >2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1 Probab=30.74 E-value=22 Score=14.42 Aligned_cols=34 Identities=12% Similarity=-0.029 Sum_probs=27.5 Q ss_pred CEEEECCCCEECHHHHHHHHHC---CCEEEEECCCCC Q ss_conf 5668617730368899999975---988999889870 Q T0603 50 ACIMLEPGTRVSHAAVRLAAQV---GTLLVWVGEAGV 83 (305) Q Consensus 50 ~~IlL~~gvsIT~~al~~la~~---Gi~V~f~g~~G~ 83 (305) -.|+|||..+||-..++.+.++ .+.|+|++.+.- T Consensus 114 ~pivlGGdHsit~~~~~al~~~~~~~~~vI~~DAH~D 150 (316) T 2a0m_A 114 FPFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLD 150 (316) T ss_dssp EEEEEESCGGGHHHHHHHHHHHSTTCCEEEEECSSCC T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 0578625865105666777751577654998344324 No 15 >2ef5_A Arginase; TTHA1496, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A Probab=30.42 E-value=22 Score=14.39 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=26.6 Q ss_pred EEEECCCCEECHHHHHHHHHC-CCEEEEECCCC Q ss_conf 668617730368899999975-98899988987 Q T0603 51 CIMLEPGTRVSHAAVRLAAQV-GTLLVWVGEAG 82 (305) Q Consensus 51 ~IlL~~gvsIT~~al~~la~~-Gi~V~f~g~~G 82 (305) .|+|||+.+||-.+++.+.+. .+.|+|++.+. T Consensus 89 pi~lGGdHsit~~~~~~~~~~~~igvI~~DAH~ 121 (290) T 2ef5_A 89 PIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHA 121 (290) T ss_dssp EEEEESSGGGHHHHHHHHHTTSCCEEEEECSBC T ss_pred EEEECCCCCHHHHHHHCCCCCCCEEEEEEECCC T ss_conf 699668650158998611345870468861464 No 16 >1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibiotic; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A Probab=29.33 E-value=23 Score=14.27 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=22.7 Q ss_pred EEEECCCCEECHHHHHHHHHC--CCEEEEECCCC Q ss_conf 668617730368899999975--98899988987 Q T0603 51 CIMLEPGTRVSHAAVRLAAQV--GTLLVWVGEAG 82 (305) Q Consensus 51 ~IlL~~gvsIT~~al~~la~~--Gi~V~f~g~~G 82 (305) -|+|||+.|+|-..++.+.+. .+.|+|++.+. T Consensus 114 pi~lGGdHsit~~~~~a~~~~~~~lgvI~~DAH~ 147 (313) T 1gq6_A 114 FLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHS 147 (313) T ss_dssp EEEEESCGGGHHHHHHHHHHHHSSEEEEEECSSC T ss_pred EEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCC T ss_conf 3551475542100113467635873599972344 No 17 >2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibitor, perfectly twinned crystal; HET: AB5; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 1wvb_A* 3e6v_A* 3e6k_A* 1d3v_A* 1hq5_A* 1hqf_A* 1hqh_A* 1r1o_A* 1rla_A 1hqx_A 3e9b_A* 3e8q_A* 3rla_A ... Probab=27.69 E-value=25 Score=14.09 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=27.9 Q ss_pred CEEEECCCCEECHHHHHHHHHC--CCEEEEECCCCC Q ss_conf 5668617730368899999975--988999889870 Q T0603 50 ACIMLEPGTRVSHAAVRLAAQV--GTLLVWVGEAGV 83 (305) Q Consensus 50 ~~IlL~~gvsIT~~al~~la~~--Gi~V~f~g~~G~ 83 (305) -.|+|||+.++|-..++.+++. .+.|+|++.+.- T Consensus 93 ~pivlGGdHsis~~~~~a~~~~~~~~~vI~~DAH~D 128 (322) T 2aeb_A 93 ISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTD 128 (322) T ss_dssp EEEEEESCGGGHHHHHHHHHHHCTTCEEEEESSSCC T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 478955887622777888874067744998613576 No 18 >1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A Probab=27.22 E-value=21 Score=14.57 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=14.9 Q ss_pred EEECCCCEECHHHHHHHHH-CCCEEEEECCCC Q ss_conf 6861773036889999997-598899988987 Q T0603 52 IMLEPGTRVSHAAVRLAAQ-VGTLLVWVGEAG 82 (305) Q Consensus 52 IlL~~gvsIT~~al~~la~-~Gi~V~f~g~~G 82 (305) |+|||+.+||-..++.+.+ ..+.|+|++.+- T Consensus 115 i~lGGdHsit~~~~~al~~~~~~~vI~~DAH~ 146 (305) T 1woh_A 115 VFLGGDHSVSYPLLRAFADVPDLHVVQLDAHL 146 (305) T ss_dssp EEEESSGGGHHHHHGGGTTSTTEEEEEECSSC T ss_pred ECCCCCCCCCHHHHHHHHHCCEEEEEEECCCC T ss_conf 11366666425799987523615788751444 No 19 >3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} Probab=23.36 E-value=29 Score=13.57 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=33.5 Q ss_pred EEEEEECCCEEEECCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCC Q ss_conf 899987686578616100356686177303688999999759889998898 Q T0603 31 AFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEA 81 (305) Q Consensus 31 ~l~i~~~~g~~~~IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~ 81 (305) .+.+.+.+.....+.-..++.+++.+ ...+...+..+.+.|+++++++.. T Consensus 40 ~~~~~~~~~~~~~l~~~~vdGlIi~~-~~~~~~~~~~l~~~~ipvV~~~~~ 89 (277) T 3cs3_A 40 EMIVCSGKKSHLFIPEKMVDGAIILD-WTFPTKEIEKFAERGHSIVVLDRT 89 (277) T ss_dssp EEEEEESTTTTTCCCTTTCSEEEEEC-TTSCHHHHHHHHHTTCEEEESSSC T ss_pred EEEEECCHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHCCCCEEEECCC T ss_conf 89998185889999967999899954-879989999999749989998677 No 20 >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Probab=21.63 E-value=32 Score=13.35 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.1 Q ss_pred ECCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCC Q ss_conf 6161003566861773036889999997598899988987 Q T0603 43 HIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG 82 (305) Q Consensus 43 ~IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G 82 (305) ..|-+++++|++|+|..=..+|++ ++++|..|+.+.... T Consensus 121 ~~~~e~~DVlVVG~G~AGl~AAi~-Aae~GakVillEK~~ 159 (571) T 1y0p_A 121 SAPHDTVDVVVVGSGGAGFSAAIS-ATDSGAKVILIEKEP 159 (571) T ss_dssp SCCSEECSEEEECCSHHHHHHHHH-HHHTTCCEEEECSSS T ss_pred CCCCCCCEEEEECCCHHHHHHHHH-HHHCCCCEEEEECCC T ss_conf 899994049998987999999999-998899489996899 No 21 >2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A Probab=20.16 E-value=28 Score=13.72 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=13.3 Q ss_pred CCCCCEEECCHHHHHHH Q ss_conf 89875130005553356 Q T0603 210 GKPLSFVYDIADIIKFD 226 (305) Q Consensus 210 g~~~Slv~DiADlfK~~ 226 (305) ++..+..|||+|||... T Consensus 45 p~~~~ItYdi~~Lf~fI 61 (104) T 2nml_A 45 PNSPSITYDISQLFDFI 61 (104) T ss_dssp TTCSSCCCCHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHH T ss_conf 99985020599999998 Done!