Query T0603 CRISPR associated protein Cas1 , E.coli, 305 residues
Match_columns 305
No_of_seqs 207 out of 468
Neff 6.3
Searched_HMMs 15564
Date Mon Jul 5 09:04:46 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0603.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0603.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jfga1 c.5.1.1 (A:1-93) UDP-N 73.1 1.5 9.5E-05 21.0 3.0 33 44-76 60-92 (93)
2 d2ioja1 c.98.2.2 (A:206-325) H 72.4 1.6 0.0001 20.8 3.1 56 27-82 44-102 (120)
3 d1jqoa_ c.1.12.3 (A:) Phosphoe 50.2 0.77 5E-05 22.8 -1.9 44 158-201 189-239 (936)
4 d1xfka_ c.42.1.1 (A:) Formimid 46.2 8.7 0.00056 16.0 3.4 32 51-82 111-151 (324)
5 d1p3da1 c.5.1.1 (A:11-106) UDP 45.8 8.8 0.00057 15.9 3.0 31 46-76 65-95 (96)
6 d2ceva_ c.42.1.1 (A:) Arginase 44.6 9.2 0.00059 15.8 3.4 34 50-83 90-125 (298)
7 d1pq3a_ c.42.1.1 (A:) Arginase 39.7 11 0.0007 15.4 3.7 33 51-83 90-124 (306)
8 d1dxha2 c.78.1.1 (A:151-335) O 39.3 11 0.00071 15.3 4.1 38 45-82 2-40 (185)
9 d1jqna_ c.1.12.3 (A:) Phosphoe 38.3 0.78 5E-05 22.8 -3.4 31 159-189 182-212 (880)
10 d2aeba1 c.42.1.1 (A:5-313) Arg 38.3 11 0.00073 15.2 3.8 33 51-83 90-124 (309)
11 d1woha_ c.42.1.1 (A:) Agmatina 35.5 9 0.00058 15.9 1.7 34 50-83 111-145 (303)
12 d1iiba_ c.44.2.1 (A:) Enzyme I 34.0 12 0.00078 15.0 2.2 50 46-104 46-95 (103)
13 d1ko7a1 c.98.2.1 (A:1-129) HPr 33.1 14 0.00089 14.7 3.7 37 45-81 77-113 (129)
14 d1neka2 c.3.1.4 (A:1-235,A:356 30.6 15 0.00097 14.4 2.5 39 43-82 2-40 (330)
15 d1gq6a_ c.42.1.1 (A:) Proclava 30.4 15 0.00098 14.4 3.2 32 51-82 106-139 (301)
16 d1woha_ c.42.1.1 (A:) Agmatina 30.1 12 0.00077 15.1 1.6 31 52-82 113-144 (303)
17 d2a0ma1 c.42.1.1 (A:13-310) Ar 28.1 17 0.0011 14.1 3.7 35 49-83 101-138 (298)
18 d1iiba_ c.44.2.1 (A:) Enzyme I 25.6 19 0.0012 13.8 2.2 51 46-105 46-96 (103)
19 d1duvg2 c.78.1.1 (G:151-333) O 24.1 20 0.0013 13.7 3.8 38 46-83 3-41 (183)
20 d2oo2a1 a.8.11.1 (A:1-75) Hypo 23.2 20 0.0013 13.6 1.9 14 172-185 46-59 (75)
21 d1w4xa1 c.3.1.5 (A:10-154,A:39 22.6 21 0.0014 13.5 2.8 36 44-81 3-39 (298)
22 d2nmla1 d.330.1.1 (A:2-101) En 22.3 17 0.0011 14.0 1.3 17 210-226 44-60 (100)
23 d2nmla1 d.330.1.1 (A:2-101) En 20.2 19 0.0012 13.7 1.1 17 210-226 44-60 (100)
No 1
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=73.12 E-value=1.5 Score=20.98 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=29.4
Q ss_pred CCCCCCCEEEECCCCEECHHHHHHHHHCCCEEE
Q ss_conf 161003566861773036889999997598899
Q T0603 44 IPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLV 76 (305)
Q Consensus 44 IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~ 76 (305)
..+.+++.+++.||+..+|..+..+.++||+|+
T Consensus 60 ~~~~~~d~vi~SPGi~~~~~~~~~a~~~gi~ii 92 (93)
T d2jfga1 60 EWLMAADLIVASPGIALAHPSLSAAADAGIEIV 92 (93)
T ss_dssp HHHHHCSEEEECTTSCTTSHHHHHHHHTTCEEE
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 322258789988987999999999998699748
No 2
>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=72.37 E-value=1.6 Score=20.77 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=41.6
Q ss_pred EECCEEEEEECCCEEEECCC---CCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCC
Q ss_conf 85778999876865786161---003566861773036889999997598899988987
Q T0603 27 VIDGAFVLIDKTGIRTHIPV---GSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG 82 (305)
Q Consensus 27 ~~~~~l~i~~~~g~~~~IPi---~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G 82 (305)
..++.+++...+-...++.. .++++|+|-+|..++...++++.+.|++|.....+-
T Consensus 44 ~~~~~lvvi~GDR~di~laa~~~~~i~~iIltgg~~p~~~i~~la~~~~ipil~t~~dT 102 (120)
T d2ioja1 44 EARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDT 102 (120)
T ss_dssp TCSSEEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCH
T ss_pred HCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCH
T ss_conf 18994799956858999999857895199997999988899999976798399977879
No 3
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}
Probab=50.24 E-value=0.77 Score=22.83 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHCCCC
Q ss_conf 8534524788888856536689999999-------9999999999970888
Q T0603 158 VTWNGRRYDPKDWEKGDTINQCISAATS-------CLYGVTEAAILAAGYA 201 (305)
Q Consensus 158 ~~~~gR~~~r~~~~~~DpvNa~LS~gys-------lLy~~~~~aI~~~Gl~ 201 (305)
.-|.....++.|+.+.|.++..|+|-.. -+|.....++...|.+
T Consensus 189 ~LW~T~eiR~~KPtv~DE~~~~l~y~~~sl~~avP~l~~~l~~al~~~~~~ 239 (936)
T d1jqoa_ 189 AAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGIN 239 (936)
T ss_dssp HHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHTTTCC
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 985753102479986999999999988505877899999999999864777
No 4
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 666]}
Probab=46.16 E-value=8.7 Score=15.98 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=27.8
Q ss_pred EEEECCCCEECHHHHHHHHH---------CCCEEEEECCCC
Q ss_conf 66861773036889999997---------598899988987
Q T0603 51 CIMLEPGTRVSHAAVRLAAQ---------VGTLLVWVGEAG 82 (305)
Q Consensus 51 ~IlL~~gvsIT~~al~~la~---------~Gi~V~f~g~~G 82 (305)
-|+|||+.+||-..++.+++ ..+.|+|++.+.
T Consensus 111 pivlGGdHsi~~~~~~a~~~~~~~~~~~~~~lgvI~fDAH~ 151 (324)
T d1xfka_ 111 AIVLGGGHEIAWATFQGLAQHFLATGVKQPRIGIINFDAHF 151 (324)
T ss_dssp EEEECSSTTHHHHHHHHHHHHHHHTTCCSCCEEEEEECSSC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 58978877662267788987622201457855799972554
No 5
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} SCOP: d1gqya1 d1p31b1 d1gqyb1 d1p31a1 d1p3db1 d1gqqa1 d1gqqb1 d1j6ua1
Probab=45.75 E-value=8.8 Score=15.94 Aligned_cols=31 Identities=3% Similarity=0.152 Sum_probs=23.8
Q ss_pred CCCCCEEEECCCCEECHHHHHHHHHCCCEEE
Q ss_conf 1003566861773036889999997598899
Q T0603 46 VGSVACIMLEPGTRVSHAAVRLAAQVGTLLV 76 (305)
Q Consensus 46 i~~i~~IlL~~gvsIT~~al~~la~~Gi~V~ 76 (305)
..+.+.+++.|++.-++..+..+-++|++|+
T Consensus 65 ~~~~D~vV~SpgI~~d~p~i~~A~~~gIpVi 95 (96)
T d1p3da1 65 IEGASVVVVSSAIKDDNPELVTSKQKRIPVI 95 (96)
T ss_dssp GTTCSEEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCCC
T ss_conf 5555357614889988988999997689402
No 6
>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]}
Probab=44.58 E-value=9.2 Score=15.83 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=28.9
Q ss_pred CEEEECCCCEECHHHHHHHHH--CCCEEEEECCCCC
Q ss_conf 566861773036889999997--5988999889870
Q T0603 50 ACIMLEPGTRVSHAAVRLAAQ--VGTLLVWVGEAGV 83 (305)
Q Consensus 50 ~~IlL~~gvsIT~~al~~la~--~Gi~V~f~g~~G~ 83 (305)
-.|+|||..++|...++.+.+ ..+.|+|++.+.-
T Consensus 90 ~pi~lGGdhsit~~~~~al~~~~~~~~vI~~DAH~D 125 (298)
T d2ceva_ 90 FPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGD 125 (298)
T ss_dssp EEEEEESSGGGHHHHHHHHHTTCSSEEEEEESSBCC
T ss_pred EEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCC
T ss_conf 378835887546330455653168851899722466
No 7
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]}
Probab=39.74 E-value=11 Score=15.35 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.9
Q ss_pred EEEECCCCEECHHHHHHHHHC--CCEEEEECCCCC
Q ss_conf 668617730368899999975--988999889870
Q T0603 51 CIMLEPGTRVSHAAVRLAAQV--GTLLVWVGEAGV 83 (305)
Q Consensus 51 ~IlL~~gvsIT~~al~~la~~--Gi~V~f~g~~G~ 83 (305)
.|+|||+.++|-..++.+++. .+.|+|++.+.-
T Consensus 90 pi~lGGdHsis~~~~~a~~~~~~~~gvi~~DAH~D 124 (306)
T d1pq3a_ 90 CVTLGGDHSLAIGTISGHARHCPDLCVVWVDAHAD 124 (306)
T ss_dssp EEEEESSGGGHHHHHHHHHTTCTTCEEEEECSSCC
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 04745777520566788974167744999732466
No 8
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.29 E-value=11 Score=15.31 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=33.2
Q ss_pred CCCCCCEEEECCC-CEECHHHHHHHHHCCCEEEEECCCC
Q ss_conf 6100356686177-3036889999997598899988987
Q T0603 45 PVGSVACIMLEPG-TRVSHAAVRLAAQVGTLLVWVGEAG 82 (305)
Q Consensus 45 Pi~~i~~IlL~~g-vsIT~~al~~la~~Gi~V~f~g~~G 82 (305)
|+.++....+|-+ ..+.+..+..|+.-|+.+.+|+..|
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~ 40 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKA 40 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 888888999867845599999999998599799986679
No 9
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}
Probab=38.31 E-value=0.78 Score=22.80 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5345247888888565366899999999999
Q T0603 159 TWNGRRYDPKDWEKGDTINQCISAATSCLYG 189 (305)
Q Consensus 159 ~~~gR~~~r~~~~~~DpvNa~LS~gyslLy~ 189 (305)
-|.....++.++.+.|.+...|.|--..++.
T Consensus 182 LW~T~e~R~~KPtv~DE~~n~l~y~~~sl~~ 212 (880)
T d1jqna_ 182 SWHTDEIRKLRPSPVDEAKWGFAVVENSLWQ 212 (880)
T ss_dssp HHHCCCBCSSCCCHHHHHHHHHHHHHHTHHH
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8667764558999999999999877889999
No 10
>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.29 E-value=11 Score=15.21 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=27.8
Q ss_pred EEEECCCCEECHHHHHHHHH--CCCEEEEECCCCC
Q ss_conf 66861773036889999997--5988999889870
Q T0603 51 CIMLEPGTRVSHAAVRLAAQ--VGTLLVWVGEAGV 83 (305)
Q Consensus 51 ~IlL~~gvsIT~~al~~la~--~Gi~V~f~g~~G~ 83 (305)
.|+|||+.++|-..++.+++ ..+.|+|++.+.-
T Consensus 90 pi~lGGdHsit~~~~~a~~~~~~~~gvI~~DAH~D 124 (309)
T d2aeba1 90 SLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTD 124 (309)
T ss_dssp EEEEESCGGGHHHHHHHHHHHCTTCEEEEESSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 69946887520777888875167760798203466
No 11
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId: 1299]}
Probab=35.54 E-value=9 Score=15.87 Aligned_cols=34 Identities=21% Similarity=0.084 Sum_probs=24.0
Q ss_pred CEEEECCCCEECHHHHHHHHHC-CCEEEEECCCCC
Q ss_conf 5668617730368899999975-988999889870
Q T0603 50 ACIMLEPGTRVSHAAVRLAAQV-GTLLVWVGEAGV 83 (305)
Q Consensus 50 ~~IlL~~gvsIT~~al~~la~~-Gi~V~f~g~~G~ 83 (305)
-.|+|||..+||...++.+++. .+.|+|++.+.-
T Consensus 111 ~pi~lGGDHsit~~~~~al~~~~~~~vI~~DAH~D 145 (303)
T d1woha_ 111 VPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLD 145 (303)
T ss_dssp EEEEEESSGGGHHHHHGGGTTSTTEEEEEECSSCC
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 26775052002367787763067616898625478
No 12
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]} SCOP: d1h9ca_ d1e2ba_
Probab=34.02 E-value=12 Score=15.02 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 10035668617730368899999975988999889870655127777640899999999
Q T0603 46 VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAK 104 (305)
Q Consensus 46 i~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G~~~y~~~~~~~~~~~~l~~Q~~ 104 (305)
+.+.+++||+|++..--.-+...++ |++|.-.+..- | +.-++...+.|+-
T Consensus 46 i~~~DviLLgPQv~~~~~~~k~~~~-~~pv~vI~~~~---Y-----G~m~G~~vL~~Al 95 (103)
T d1iiba_ 46 GQNADVVLLGPQIAYMLPEIQRLLP-NKPVEVIDSLL---Y-----GKVDGLGVLKAAV 95 (103)
T ss_dssp HTTCSEEEECGGGGGGHHHHHHHCT-TSCEEECCHHH---H-----HTTCHHHHHHHHH
T ss_pred HCCCCEEEECHHHHHHHHHHHHHHC-CCCEEEECCHH---H-----CCCCHHHHHHHHH
T ss_conf 0589999987367876899999857-99868607033---1-----1468289999999
No 13
>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=33.10 E-value=14 Score=14.68 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=30.0
Q ss_pred CCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCC
Q ss_conf 6100356686177303688999999759889998898
Q T0603 45 PVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEA 81 (305)
Q Consensus 45 Pi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~ 81 (305)
=-.++.+|++..|..+...++..|-++|++|......
T Consensus 77 ~~~~~~~lIit~g~~~p~~li~~a~~~~iPll~t~~~ 113 (129)
T d1ko7a1 77 CRPETPAIIVTRDLEPPEELIEAAKEHETPLITSKIA 113 (129)
T ss_dssp CCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSC
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEECCC
T ss_conf 1789868999799999899999999809849995785
No 14
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=30.61 E-value=15 Score=14.41 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred ECCCCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCC
Q ss_conf 6161003566861773036889999997598899988987
Q T0603 43 HIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG 82 (305)
Q Consensus 43 ~IPi~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G 82 (305)
.+|+...++|++|+|..=..+|+.+ +++|..|..+....
T Consensus 2 ~~~~~~~DVlVVG~G~AGl~AAl~a-a~~G~~V~lleK~~ 40 (330)
T d1neka2 2 KLPVREFDAVVIGAGGAGMRAALQI-SQSGQTCALLSKVF 40 (330)
T ss_dssp CCCEEEESCEEECCSHHHHHHHHHH-HHTTCCCEEECSSC
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHH-HHCCCEEEEEECCC
T ss_conf 9875169999999678999999999-87299089996789
No 15
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=30.40 E-value=15 Score=14.39 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=21.7
Q ss_pred EEEECCCCEECHHHHHHHHH--CCCEEEEECCCC
Q ss_conf 66861773036889999997--598899988987
Q T0603 51 CIMLEPGTRVSHAAVRLAAQ--VGTLLVWVGEAG 82 (305)
Q Consensus 51 ~IlL~~gvsIT~~al~~la~--~Gi~V~f~g~~G 82 (305)
.|+|||..|||-..++.+.+ ..+.|+|++.+-
T Consensus 106 pi~LGGdHsis~~~~~a~~~~~~~~~vi~~DAH~ 139 (301)
T d1gq6a_ 106 FLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHS 139 (301)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHSSEEEEEECSSC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCC
T ss_conf 1431553344541034465416746788761447
No 16
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId: 1299]}
Probab=30.07 E-value=12 Score=15.09 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=21.7
Q ss_pred EEECCCCEECHHHHHHHHH-CCCEEEEECCCC
Q ss_conf 6861773036889999997-598899988987
Q T0603 52 IMLEPGTRVSHAAVRLAAQ-VGTLLVWVGEAG 82 (305)
Q Consensus 52 IlL~~gvsIT~~al~~la~-~Gi~V~f~g~~G 82 (305)
|+|||..+||-..++.+.+ ..+.|+|++.+.
T Consensus 113 i~lGGdHsit~~~~~a~~~~~~~~vI~~DAH~ 144 (303)
T d1woha_ 113 VFLGGDHSVSYPLLRAFADVPDLHVVQLDAHL 144 (303)
T ss_dssp EEEESSGGGHHHHHGGGTTSTTEEEEEECSSC
T ss_pred EEECCCCCCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf 44347666425799987523613688742454
No 17
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId: 5693]}
Probab=28.07 E-value=17 Score=14.13 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=27.3
Q ss_pred CCEEEECCCCEECHHHHHHHHHC---CCEEEEECCCCC
Q ss_conf 35668617730368899999975---988999889870
Q T0603 49 VACIMLEPGTRVSHAAVRLAAQV---GTLLVWVGEAGV 83 (305)
Q Consensus 49 i~~IlL~~gvsIT~~al~~la~~---Gi~V~f~g~~G~ 83 (305)
.--|+|||+.++|-..++.+.++ .+.|+|++.+.-
T Consensus 101 ~~pivlGGdHsit~~~~~a~~~~~~~~i~vI~~DAH~D 138 (298)
T d2a0ma1 101 AFPFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLD 138 (298)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHSTTCCEEEEECSSCC
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 84666347863227777655522576542998345524
No 18
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]}
Probab=25.56 E-value=19 Score=13.84 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCEECHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 100356686177303688999999759889998898706551277776408999999998
Q T0603 46 VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKL 105 (305)
Q Consensus 46 i~~i~~IlL~~gvsIT~~al~~la~~Gi~V~f~g~~G~~~y~~~~~~~~~~~~l~~Q~~~ 105 (305)
+.+.++|||+|.++..-.-++..+. +++|...+.. .| ...++...+.|+.-
T Consensus 46 ~~~~DviLl~PQv~~~~~~i~~~~~-~~pv~vI~~~---~Y-----g~mdg~~iL~~a~~ 96 (103)
T d1iiba_ 46 GQNADVVLLGPQIAYMLPEIQRLLP-NKPVEVIDSL---LY-----GKVDGLGVLKAAVA 96 (103)
T ss_dssp HTTCSEEEECGGGGGGHHHHHHHCT-TSCEEECCHH---HH-----HTTCHHHHHHHHHH
T ss_pred CCCCCEEEECHHHHHHHHHHHHHCC-CCCEEEECHH---HH-----HCCCHHHHHHHHHH
T ss_conf 4599799989879887999998808-9988975847---52-----32699999999999
No 19
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=24.08 E-value=20 Score=13.66 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=31.7
Q ss_pred CCCCCEEEECCC-CEECHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 100356686177-30368899999975988999889870
Q T0603 46 VGSVACIMLEPG-TRVSHAAVRLAAQVGTLLVWVGEAGV 83 (305)
Q Consensus 46 i~~i~~IlL~~g-vsIT~~al~~la~~Gi~V~f~g~~G~ 83 (305)
+.++...++|.+ ..+.+..+..|+.-|+.+.+|+..+.
T Consensus 3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~ 41 (183)
T d1duvg2 3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC 41 (183)
T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 678789999378248999999999984997999713676
No 20
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.25 E-value=20 Score=13.56 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 56536689999999
Q T0603 172 KGDTINQCISAATS 185 (305)
Q Consensus 172 ~~DpvNa~LS~gys 185 (305)
.+|++||+.++.|+
T Consensus 46 ~gD~v~A~~~~~Ya 59 (75)
T d2oo2a1 46 KGDLVRAFECVVWA 59 (75)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 78799999999999
No 21
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}
Probab=22.60 E-value=21 Score=13.48 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=27.9
Q ss_pred CCCCCCCEEEECCCCE-ECHHHHHHHHHCCCEEEEECCC
Q ss_conf 1610035668617730-3688999999759889998898
Q T0603 44 IPVGSVACIMLEPGTR-VSHAAVRLAAQVGTLLVWVGEA 81 (305)
Q Consensus 44 IPi~~i~~IlL~~gvs-IT~~al~~la~~Gi~V~f~g~~ 81 (305)
=|.+.++++++|.|.+ |+.+ ..|.+.|+.+..+...
T Consensus 3 ~p~~~~dV~IIGAG~sGl~~a--~~L~~~G~~v~i~Ek~ 39 (298)
T d1w4xa1 3 QPPEEVDVLVVGAGFSGLYAL--YRLRELGRSVHVIETA 39 (298)
T ss_dssp CCCSEEEEEEECCSHHHHHHH--HHHHHTTCCEEEECSS
T ss_pred CCCCCCCEEEECCCHHHHHHH--HHHHHCCCCEEEEECC
T ss_conf 999879899989659999999--9998689898999768
No 22
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]} SCOP: d1w9ga1 d1wwqa1 d1wz7a1 d1wz7b1
Probab=22.30 E-value=17 Score=14.03 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=12.9
Q ss_pred CCCCCEEECCHHHHHHH
Q ss_conf 89875130005553356
Q T0603 210 GKPLSFVYDIADIIKFD 226 (305)
Q Consensus 210 g~~~Slv~DiADlfK~~ 226 (305)
++.++..|||.|||+..
T Consensus 44 P~~~~ITYdIs~Lf~fI 60 (100)
T d2nmla1 44 PNSPSITYDISQLFDFI 60 (100)
T ss_dssp TTCSSCCCCHHHHHHHH
T ss_pred CCCCCCEECHHHHHHHH
T ss_conf 89985310588999987
No 23
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.19 E-value=19 Score=13.73 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=13.3
Q ss_pred CCCCCEEECCHHHHHHH
Q ss_conf 89875130005553356
Q T0603 210 GKPLSFVYDIADIIKFD 226 (305)
Q Consensus 210 g~~~Slv~DiADlfK~~ 226 (305)
++..+..|||+|||...
T Consensus 44 p~~~~ItYdi~~Lf~FI 60 (100)
T d2nmla1 44 PNSPSITYDISQLFDFI 60 (100)
T ss_dssp TTCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHH
T ss_conf 99985010499999998
Done!