Query T0604 3NLC, Vibrio parahaemolyticus, 549 residues Match_columns 549 No_of_seqs 329 out of 2758 Neff 7.3 Searched_HMMs 22458 Date Mon Jul 5 09:27:51 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0604.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0604.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2i0z_A NAD(FAD)-utilizing dehy 100.0 1E-38 4.6E-43 259.5 22.6 404 103-544 22-445 (447) 2 3cp8_A TRNA uridine 5-carboxym 100.0 1.4E-37 6.1E-42 252.5 16.2 368 108-544 22-413 (641) 3 3ces_A MNMG, tRNA uridine 5-ca 100.0 6.5E-34 2.9E-38 229.5 19.0 354 107-539 28-418 (651) 4 2zxi_A TRNA uridine 5-carboxym 100.0 2.3E-32 1E-36 219.8 18.1 360 107-540 27-424 (637) 5 3g5s_A Methylenetetrahydrofola 100.0 2.8E-31 1.3E-35 212.9 8.3 350 108-539 2-362 (443) 6 1qo8_A Flavocytochrome C3 fuma 100.0 1.4E-28 6.1E-33 196.1 18.2 174 108-289 122-323 (566) 7 1d4d_A Flavocytochrome C fumar 100.0 1.2E-28 5.4E-33 196.4 16.8 179 108-291 127-330 (572) 8 1y0p_A Fumarate reductase flav 100.0 3.2E-28 1.4E-32 193.8 17.1 173 108-288 127-327 (571) 9 2gqf_A Hypothetical protein HI 100.0 6.4E-26 2.9E-30 179.3 24.7 379 107-541 4-401 (401) 10 2h88_A Succinate dehydrogenase 99.9 9.1E-24 4.1E-28 165.8 18.1 182 108-292 19-245 (621) 11 2wdq_A Succinate dehydrogenase 99.9 2.2E-23 9.6E-28 163.4 19.3 182 108-292 8-234 (588) 12 1kf6_A Fumarate reductase flav 99.9 1.5E-20 6.6E-25 145.7 25.1 181 108-292 6-225 (602) 13 2bs2_A Quinol-fumarate reducta 99.9 2.9E-20 1.3E-24 143.8 26.0 167 108-277 6-220 (660) 14 1jnr_A Adenylylsulfate reducta 99.9 1.8E-19 7.9E-24 138.9 24.9 170 103-277 18-218 (643) 15 2e5v_A L-aspartate oxidase; ar 99.9 2.8E-20 1.2E-24 143.9 18.0 176 110-291 2-203 (472) 16 1chu_A Protein (L-aspartate ox 99.8 5.1E-21 2.3E-25 148.6 10.9 181 107-292 8-236 (540) 17 1o94_A Tmadh, trimethylamine d 99.8 9.6E-24 4.3E-28 165.7 -3.6 127 20-146 302-428 (729) 18 3ka7_A Oxidoreductase; structu 99.8 3.2E-18 1.4E-22 131.1 23.4 55 219-274 195-249 (425) 19 1ps9_A 2,4-dienoyl-COA reducta 99.8 2.8E-22 1.3E-26 156.5 -2.0 175 20-275 291-465 (671) 20 3gyx_A Adenylylsulfate reducta 99.8 6.2E-17 2.7E-21 123.0 20.5 168 107-277 22-233 (662) 21 2cul_A Glucose-inhibited divis 99.8 1.7E-18 7.4E-23 132.8 10.7 162 108-319 4-188 (232) 22 1s3e_A Amine oxidase [flavin-c 99.8 1.1E-16 4.8E-21 121.4 18.7 42 108-149 5-46 (520) 23 1b37_A Protein (polyamine oxid 99.7 8.8E-16 3.9E-20 115.7 19.6 43 107-149 4-47 (472) 24 2gmh_A Electron transfer flavo 99.7 6.8E-15 3E-19 110.1 22.0 166 100-279 28-219 (584) 25 2gag_B Heterotetrameric sarcos 99.7 1.1E-15 4.7E-20 115.2 16.4 176 108-284 22-237 (405) 26 2oln_A NIKD protein; flavoprot 99.7 1E-15 4.6E-20 115.3 14.7 172 108-281 5-212 (397) 27 1pj5_A N,N-dimethylglycine oxi 99.7 9.6E-16 4.3E-20 115.5 14.2 177 107-284 4-214 (830) 28 3i6d_A Protoporphyrinogen oxid 99.7 4.2E-14 1.9E-18 105.2 20.5 44 106-149 4-53 (470) 29 3fmw_A Oxygenase; mithramycin, 99.6 9.1E-16 4E-20 115.6 10.7 172 103-293 45-219 (570) 30 2qa1_A PGAE, polyketide oxygen 99.6 2.3E-15 1E-19 113.1 12.3 163 106-292 10-176 (500) 31 1y56_B Sarcosine oxidase; dehy 99.6 1.1E-14 4.7E-19 108.9 15.2 175 108-283 6-211 (382) 32 2gf3_A MSOX, monomeric sarcosi 99.6 5.8E-15 2.6E-19 110.6 13.8 171 109-281 5-209 (389) 33 2qa2_A CABE, polyketide oxygen 99.6 4.3E-15 1.9E-19 111.4 11.9 153 105-276 10-165 (499) 34 3i3l_A Alkylhalidase CMLS; fla 99.6 3.8E-15 1.7E-19 111.7 10.5 159 103-277 19-188 (591) 35 3e1t_A Halogenase; flavoprotei 99.6 1.1E-14 5E-19 108.8 12.5 140 107-276 7-171 (512) 36 2uzz_A N-methyl-L-tryptophan o 99.6 5.1E-15 2.3E-19 110.9 10.7 171 106-279 1-206 (372) 37 2vvm_A Monoamine oxidase N; FA 99.6 9.1E-14 4.1E-18 103.1 16.1 55 219-274 254-309 (495) 38 3f8d_A Thioredoxin reductase ( 99.6 2.1E-14 9.1E-19 107.1 12.4 109 108-276 16-124 (323) 39 1d5t_A Guanine nucleotide diss 99.6 2E-14 8.8E-19 107.2 11.4 55 219-274 233-287 (433) 40 2yqu_A 2-oxoglutarate dehydrog 99.6 2.3E-14 1E-18 106.8 11.3 79 195-275 184-262 (455) 41 3fbs_A Oxidoreductase; structu 99.6 7.4E-14 3.3E-18 103.6 13.2 110 106-275 1-110 (297) 42 3d1c_A Flavin-containing putat 99.6 6.8E-14 3E-18 103.9 13.0 138 108-276 5-142 (369) 43 2vou_A 2,6-dihydroxypyridine h 99.6 7.2E-14 3.2E-18 103.7 12.7 150 106-277 4-154 (397) 44 2b9w_A Putative aminooxidase; 99.6 5.1E-14 2.3E-18 104.7 11.7 45 105-149 4-49 (424) 45 3cgv_A Geranylgeranyl reductas 99.6 2.1E-14 9.5E-19 107.0 9.7 155 108-277 5-162 (397) 46 3k7m_X 6-hydroxy-L-nicotine ox 99.5 4.1E-14 1.8E-18 105.3 11.1 50 225-275 208-257 (431) 47 2iid_A L-amino-acid oxidase; f 99.5 1.2E-13 5.4E-18 102.3 12.8 47 103-149 29-75 (498) 48 2zbw_A Thioredoxin reductase; 99.5 1.4E-13 6.3E-18 101.9 12.7 114 108-275 6-119 (335) 49 3ihg_A RDME; flavoenzyme, anth 99.5 2.7E-14 1.2E-18 106.4 8.4 170 108-294 6-196 (535) 50 3gmb_A 2-methyl-3-hydroxypyrid 99.5 2.3E-13 1E-17 100.6 13.2 136 107-276 47-195 (415) 51 1gte_A Dihydropyrimidine dehyd 99.5 7.3E-13 3.2E-17 97.4 14.8 43 103-145 183-226 (1025) 52 1k0i_A P-hydroxybenzoate hydro 99.5 1.2E-13 5.4E-18 102.3 10.4 151 106-275 1-161 (394) 53 2vdc_G Glutamate synthase [NAD 99.5 9.7E-13 4.3E-17 96.7 14.9 99 103-275 118-217 (456) 54 3da1_A Glycerol-3-phosphate de 99.5 7.5E-13 3.4E-17 97.3 13.5 174 108-283 19-238 (561) 55 2gv8_A Monooxygenase; FMO, FAD 99.5 2.4E-13 1.1E-17 100.5 10.5 157 107-276 6-176 (447) 56 2bry_A NEDD9 interacting prote 99.5 9.9E-14 4.4E-18 102.8 8.0 132 104-275 89-228 (497) 57 2ivd_A PPO, PPOX, protoporphyr 99.5 6.1E-13 2.7E-17 97.9 11.8 45 105-149 14-58 (478) 58 2r0c_A REBC; flavin adenine di 99.5 1.7E-14 7.7E-19 107.6 3.8 176 104-294 23-209 (549) 59 2rgh_A Alpha-glycerophosphate 99.5 4.9E-12 2.2E-16 92.2 16.1 175 108-283 33-256 (571) 60 2vq7_A Flavin-containing monoo 99.4 2.5E-13 1.1E-17 100.3 8.4 153 104-276 4-170 (461) 61 1w4x_A Phenylacetone monooxyge 99.4 1.2E-12 5.4E-17 96.0 11.7 129 107-275 16-152 (542) 62 1trb_A Thioredoxin reductase; 99.4 1.6E-12 7.2E-17 95.2 12.0 110 107-275 5-114 (320) 63 2e1m_A L-glutamate oxidase; L- 99.4 1.1E-12 4.9E-17 96.3 11.0 48 103-150 40-88 (376) 64 1rp0_A ARA6, thiazole biosynth 99.4 3.2E-12 1.4E-16 93.4 13.3 142 105-279 37-193 (284) 65 1ryi_A Glycine oxidase; flavop 99.4 1.9E-12 8.6E-17 94.8 12.1 168 108-283 18-225 (382) 66 2bcg_G Secretory pathway GDP d 99.4 2.5E-12 1.1E-16 94.1 12.4 53 220-273 242-296 (453) 67 3fg2_P Putative rubredoxin red 99.4 5.8E-12 2.6E-16 91.7 14.2 60 219-278 183-242 (404) 68 2cdu_A NADPH oxidase; flavoenz 99.4 6.5E-12 2.9E-16 91.5 14.2 56 219-275 190-245 (452) 69 3c96_A Flavin-containing monoo 99.4 4.9E-12 2.2E-16 92.3 12.6 153 107-276 4-168 (410) 70 2eq6_A Pyruvate dehydrogenase 99.4 1E-11 4.5E-16 90.3 12.9 35 109-144 8-42 (464) 71 1zmd_A Dihydrolipoyl dehydroge 99.4 1.5E-11 6.9E-16 89.1 13.5 41 104-144 3-43 (474) 72 3cty_A Thioredoxin reductase; 99.4 5.5E-11 2.5E-15 85.6 16.1 49 497-546 270-319 (319) 73 2qcu_A Aerobic glycerol-3-phos 99.4 4.2E-11 1.9E-15 86.3 15.4 175 108-284 4-217 (501) 74 3dje_A Fructosyl amine: oxygen 99.4 1.5E-11 6.9E-16 89.1 13.2 169 106-277 5-221 (438) 75 3lov_A Protoporphyrinogen oxid 99.4 1.8E-11 7.8E-16 88.7 13.3 44 106-149 3-48 (475) 76 1ges_A Glutathione reductase; 99.4 3.1E-12 1.4E-16 93.4 9.2 35 109-144 6-40 (450) 77 3c4a_A Probable tryptophan hyd 99.3 3.3E-12 1.5E-16 93.3 8.7 138 109-275 2-141 (381) 78 1fl2_A Alkyl hydroperoxide red 99.3 1.5E-11 6.6E-16 89.2 11.8 109 109-275 3-113 (310) 79 1ebd_A E3BD, dihydrolipoamide 99.3 3.4E-11 1.5E-15 86.9 13.6 34 107-140 3-36 (455) 80 3gwf_A Cyclohexanone monooxyge 99.3 2.2E-11 9.7E-16 88.2 12.5 134 107-275 8-145 (540) 81 1hyu_A AHPF, alkyl hydroperoxi 99.3 2.4E-11 1.1E-15 87.9 12.1 112 106-275 211-324 (521) 82 2weu_A Tryptophan 5-halogenase 99.3 6.9E-11 3.1E-15 85.0 14.2 59 217-275 170-228 (511) 83 2qae_A Lipoamide, dihydrolipoy 99.3 7.7E-11 3.4E-15 84.7 14.5 36 109-144 4-39 (468) 84 2r9z_A Glutathione amide reduc 99.3 3.3E-11 1.4E-15 87.1 12.4 32 109-140 6-37 (463) 85 3ef6_A Toluene 1,2-dioxygenase 99.3 3.8E-12 1.7E-16 92.9 7.6 107 106-275 1-109 (410) 86 1zk7_A HGII, reductase, mercur 99.3 2.2E-11 9.7E-16 88.2 11.2 33 108-140 5-37 (467) 87 3iwa_A FAD-dependent pyridine 99.3 2.7E-11 1.2E-15 87.6 11.4 36 107-142 3-40 (472) 88 2pyx_A Tryptophan halogenase; 99.3 1.5E-10 6.9E-15 82.8 14.8 59 217-275 172-231 (526) 89 3ics_A Coenzyme A-disulfide re 99.3 8.7E-11 3.9E-15 84.4 13.5 91 196-292 205-295 (588) 90 3klj_A NAD(FAD)-dependent dehy 99.3 3.6E-12 1.6E-16 93.0 6.4 109 104-275 6-114 (385) 91 2dkh_A 3-hydroxybenzoate hydro 99.3 1.3E-12 5.6E-17 95.9 3.6 174 106-293 31-223 (639) 92 2z3y_A Lysine-specific histone 99.3 8.2E-12 3.6E-16 90.8 6.8 52 98-149 98-149 (662) 93 1dxl_A Dihydrolipoamide dehydr 99.3 1.8E-10 7.9E-15 82.4 13.4 38 107-144 6-43 (470) 94 1ojt_A Surface protein; redox- 99.3 4.1E-11 1.8E-15 86.5 10.1 37 108-144 7-43 (482) 95 1aog_A Trypanothione reductase 99.2 1.2E-10 5.2E-15 83.6 12.3 56 220-275 231-286 (485) 96 2bc0_A NADH oxidase; flavoprot 99.2 4.5E-11 2E-15 86.2 9.8 112 104-274 32-146 (490) 97 1v59_A Dihydrolipoamide dehydr 99.2 2.6E-10 1.2E-14 81.4 13.5 37 108-144 6-42 (478) 98 2xag_A Lysine-specific histone 99.2 1.6E-11 7.2E-16 89.0 6.9 51 99-149 270-320 (852) 99 2a8x_A Dihydrolipoyl dehydroge 99.2 2.1E-10 9.5E-15 82.0 12.0 134 109-275 5-144 (464) 100 1xdi_A RV3303C-LPDA; reductase 99.2 2.6E-10 1.2E-14 81.4 12.3 37 106-143 1-40 (499) 101 2v3a_A Rubredoxin reductase; a 99.2 3.8E-10 1.7E-14 80.4 13.1 105 108-275 5-111 (384) 102 1lvl_A Dihydrolipoamide dehydr 99.2 5E-11 2.2E-15 85.9 8.0 36 105-140 3-38 (458) 103 3dk9_A Grase, GR, glutathione 99.2 3.7E-10 1.6E-14 80.5 12.4 36 108-144 21-56 (478) 104 2ywl_A Thioredoxin reductase r 99.2 6.6E-10 2.9E-14 78.9 13.2 107 109-276 3-109 (180) 105 1c0p_A D-amino acid oxidase; a 99.2 5.1E-10 2.3E-14 79.6 12.6 154 106-278 5-186 (363) 106 2q7v_A Thioredoxin reductase; 99.2 5E-10 2.2E-14 79.6 12.5 116 103-275 4-121 (325) 107 3itj_A Thioredoxin reductase 1 99.2 1.1E-10 5.1E-15 83.7 9.1 120 104-275 19-140 (338) 108 3lad_A Dihydrolipoamide dehydr 99.2 1.2E-09 5.5E-14 77.2 14.3 38 107-144 3-40 (476) 109 3dgz_A Thioredoxin reductase 2 99.2 9.3E-10 4.2E-14 77.9 13.5 142 108-276 7-158 (488) 110 1mo9_A ORF3; nucleotide bindin 99.2 2.1E-10 9.5E-15 82.0 9.9 43 102-144 38-80 (523) 111 1coy_A Cholesterol oxidase; ox 99.2 3.9E-10 1.7E-14 80.3 11.2 35 107-141 11-45 (507) 112 1kdg_A CDH, cellobiose dehydro 99.2 6.7E-09 3E-13 72.5 17.4 51 224-274 199-258 (546) 113 1q1r_A Putidaredoxin reductase 99.1 2.4E-09 1.1E-13 75.3 15.1 109 106-276 3-113 (431) 114 3dme_A Conserved exported prot 99.1 5.7E-10 2.5E-14 79.3 11.8 174 108-281 5-213 (369) 115 2a87_A TRXR, TR, thioredoxin r 99.1 6.8E-10 3E-14 78.8 12.0 111 107-275 14-124 (335) 116 2e4g_A Tryptophan halogenase; 99.1 4.2E-10 1.9E-14 80.1 10.9 58 218-275 192-250 (550) 117 1sez_A Protoporphyrinogen oxid 99.1 4E-11 1.8E-15 86.5 5.4 44 105-148 11-54 (504) 118 3kd9_A Coenzyme A disulfide re 99.1 1.3E-10 5.7E-15 83.3 8.0 107 108-276 4-113 (449) 119 1rsg_A FMS1 protein; FAD bindi 99.1 3.4E-11 1.5E-15 87.0 4.9 46 104-149 5-51 (516) 120 2jae_A L-amino acid oxidase; o 99.1 6.3E-11 2.8E-15 85.3 6.3 47 103-149 7-53 (489) 121 2aqj_A Tryptophan halogenase, 99.1 5.9E-10 2.6E-14 79.2 11.2 57 218-275 163-220 (538) 122 1yvv_A Amine oxidase, flavin-c 99.1 5.6E-11 2.5E-15 85.6 6.0 43 106-148 1-43 (336) 123 1nhp_A NADH peroxidase; oxidor 99.1 4.3E-10 1.9E-14 80.0 10.4 108 109-275 2-113 (447) 124 3ihm_A Styrene monooxygenase A 99.1 1.6E-10 7.2E-15 82.7 8.1 39 102-140 17-55 (430) 125 2q0l_A TRXR, thioredoxin reduc 99.1 1.3E-09 5.9E-14 77.0 12.4 111 108-275 2-112 (311) 126 2gag_A Heterotetrameric sarcos 99.1 1.2E-09 5.3E-14 77.3 12.0 40 109-148 130-169 (965) 127 1onf_A GR, grase, glutathione 99.1 2.1E-09 9.3E-14 75.7 13.2 38 106-144 1-38 (500) 128 2bi7_A UDP-galactopyranose mut 99.1 7.9E-11 3.5E-15 84.7 5.9 44 106-149 2-45 (384) 129 3h28_A Sulfide-quinone reducta 99.1 8.2E-11 3.6E-15 84.6 6.0 105 106-275 1-107 (430) 130 1m6i_A Programmed cell death p 99.1 1.7E-09 7.7E-14 76.2 12.5 132 106-276 10-143 (493) 131 3h8l_A NADH oxidase; membrane 99.1 1.1E-09 4.7E-14 77.6 11.4 105 108-275 2-111 (409) 132 3cgb_A Pyridine nucleotide-dis 99.1 7.3E-10 3.2E-14 78.6 10.0 36 107-142 36-73 (480) 133 3kpk_A Sulfide-quinone reducta 99.1 3.5E-10 1.6E-14 80.6 8.1 104 108-276 2-108 (434) 134 2v6o_A Thioredoxin glutathione 99.1 4.7E-09 2.1E-13 73.5 13.0 145 108-275 108-259 (596) 135 2hqm_A GR, grase, glutathione 99.0 2.7E-09 1.2E-13 75.0 11.6 35 108-143 12-46 (479) 136 2gqw_A Ferredoxin reductase; f 99.0 6.5E-09 2.9E-13 72.6 13.5 108 103-276 3-112 (408) 137 1y56_A Hypothetical protein PH 99.0 7.6E-10 3.4E-14 78.5 7.8 106 107-274 108-216 (493) 138 1yqz_A Coenzyme A disulfide re 99.0 2.2E-09 9.6E-14 75.6 9.6 35 108-142 2-38 (438) 139 1n4w_A CHOD, cholesterol oxida 99.0 5E-09 2.2E-13 73.3 11.3 33 109-141 7-39 (504) 140 3dgh_A TRXR-1, thioredoxin red 99.0 2.1E-09 9.2E-14 75.8 9.2 143 107-275 9-160 (483) 141 2f5v_A Pyranose 2-oxidase; fla 99.0 1.6E-08 7.1E-13 70.2 13.5 37 105-141 16-52 (595) 142 3l8k_A Dihydrolipoyl dehydroge 99.0 2.5E-09 1.1E-13 75.3 9.1 37 108-144 5-41 (466) 143 1xhc_A NADH oxidase /nitrite r 99.0 5.4E-10 2.4E-14 79.4 5.3 107 105-276 6-112 (367) 144 3hdq_A UDP-galactopyranose mut 99.0 7.2E-10 3.2E-14 78.6 5.9 44 105-148 27-70 (397) 145 2gjc_A Thiazole biosynthetic e 99.0 2.4E-09 1.1E-13 75.3 8.4 114 106-252 64-179 (326) 146 2zzc_A Thioredoxin reductase 1 98.9 1.4E-09 6.2E-14 76.8 6.7 41 103-143 22-62 (513) 147 1v0j_A UDP-galactopyranose mut 98.9 1.1E-09 4.8E-14 77.5 6.1 43 107-149 7-50 (399) 148 1fec_A Trypanothione reductase 98.9 2.7E-08 1.2E-12 68.8 12.7 36 107-142 3-39 (490) 149 1i8t_A UDP-galactopyranose mut 98.9 1.3E-09 5.8E-14 77.0 5.0 42 108-149 2-43 (367) 150 3ic9_A Dihydrolipoamide dehydr 98.9 1.2E-08 5.2E-13 71.0 9.6 33 108-140 9-41 (492) 151 1fcd_A Flavocytochrome C sulfi 98.9 1.7E-08 7.5E-13 70.1 10.2 103 107-275 2-106 (401) 152 1cjc_A Protein (adrenodoxin re 98.8 2.8E-09 1.2E-13 74.9 5.0 42 103-144 2-45 (460) 153 2yr5_A Pro-enzyme of L-phenyla 98.7 4.2E-09 1.9E-13 73.8 3.5 44 106-149 55-123 (721) 154 1lqt_A FPRA; NADP+ derivative, 98.7 8.6E-09 3.8E-13 71.9 3.6 37 108-144 4-47 (456) 155 1vdc_A NTR, NADPH dependent th 98.6 1.7E-08 7.6E-13 70.0 4.1 116 106-275 7-122 (333) 156 3d1c_A Flavin-containing putat 98.6 6.5E-07 2.9E-11 60.1 11.5 109 103-277 162-272 (369) 157 1fec_A Trypanothione reductase 98.6 1.5E-07 6.5E-12 64.2 8.1 100 104-275 184-286 (490) 158 2hqm_A GR, grase, glutathione 98.6 1.4E-06 6.3E-11 58.0 12.1 98 105-274 183-282 (479) 159 2bc0_A NADH oxidase; flavoprot 98.5 2E-06 9E-11 57.0 12.7 99 105-276 192-290 (490) 160 1mo9_A ORF3; nucleotide bindin 98.5 1.8E-06 8.1E-11 57.3 11.2 102 105-278 212-317 (523) 161 2v6o_A Thioredoxin glutathione 98.5 3.7E-06 1.7E-10 55.4 12.3 97 106-275 285-393 (596) 162 1pn0_A Phenol 2-monooxygenase; 98.5 1.5E-07 6.7E-12 64.1 5.1 52 109-167 10-66 (665) 163 1nhp_A NADH peroxidase; oxidor 98.5 3.6E-06 1.6E-10 55.4 12.2 99 105-276 147-245 (447) 164 3dgh_A TRXR-1, thioredoxin red 98.4 3.9E-06 1.7E-10 55.2 12.0 99 104-275 184-287 (483) 165 2jbv_A Choline oxidase; alcoho 98.4 2.3E-07 1E-11 62.9 4.8 34 108-141 14-48 (546) 166 3g3e_A D-amino-acid oxidase; F 98.4 8.8E-08 3.9E-12 65.5 1.9 52 214-278 136-187 (351) 167 2zbw_A Thioredoxin reductase; 98.3 2.6E-06 1.2E-10 56.3 8.9 97 105-275 150-250 (335) 168 3kd9_A Coenzyme A disulfide re 98.3 1.1E-05 4.9E-10 52.4 11.8 112 105-292 146-257 (449) 169 3cgb_A Pyridine nucleotide-dis 98.3 1.1E-05 4.8E-10 52.4 11.1 99 105-277 184-282 (480) 170 1cf3_A Protein (glucose oxidas 98.3 5.6E-07 2.5E-11 60.5 4.5 37 107-143 19-56 (583) 171 1gpe_A Protein (glucose oxidas 98.3 8.9E-07 4E-11 59.2 5.1 36 107-142 24-60 (587) 172 3fim_B ARYL-alcohol oxidase; A 98.2 5.3E-07 2.4E-11 60.6 2.9 33 109-141 4-37 (566) 173 2zzc_A Thioredoxin reductase 1 98.2 6E-05 2.7E-09 47.8 13.4 99 104-275 201-307 (513) 174 1ju2_A HydroxynitrIle lyase; f 98.1 1.6E-06 7.1E-11 57.7 3.3 35 107-142 26-60 (536) 175 3gwf_A Cyclohexanone monooxyge 97.9 0.00026 1.2E-08 43.7 12.6 37 105-141 176-212 (540) 176 3ic9_A Dihydrolipoamide dehydr 97.9 0.00018 8E-09 44.8 11.1 39 104-142 171-209 (492) 177 1w4x_A Phenylacetone monooxyge 97.9 0.0004 1.8E-08 42.6 12.6 36 106-141 185-220 (542) 178 1hyu_A AHPF, alkyl hydroperoxi 97.8 4.6E-05 2E-09 48.5 7.3 50 496-546 469-519 (521) 179 2eq6_A Pyruvate dehydrogenase 97.8 2.3E-05 1E-09 50.4 5.6 99 105-276 167-270 (464) 180 2a8x_A Dihydrolipoyl dehydroge 97.8 3.1E-05 1.4E-09 49.6 5.8 101 104-276 168-270 (464) 181 1lvl_A Dihydrolipoamide dehydr 97.8 3.2E-05 1.4E-09 49.5 5.6 99 104-275 168-266 (458) 182 1xhc_A NADH oxidase /nitrite r 97.8 9E-05 4E-09 46.7 7.9 91 107-276 143-233 (367) 183 3lad_A Dihydrolipoamide dehydr 97.8 3.8E-05 1.7E-09 49.0 6.0 100 104-275 177-278 (476) 184 1dxl_A Dihydrolipoamide dehydr 97.7 3E-05 1.3E-09 49.6 4.9 100 104-275 174-277 (470) 185 3fbs_A Oxidoreductase; structu 97.7 0.00012 5.3E-09 45.9 7.5 45 500-545 250-294 (297) 186 3klj_A NAD(FAD)-dependent dehy 97.7 0.00011 4.7E-09 46.2 7.1 84 107-275 146-229 (385) 187 1v59_A Dihydrolipoamide dehydr 97.7 6.2E-05 2.8E-09 47.7 5.9 99 105-275 181-285 (478) 188 2q7v_A Thioredoxin reductase; 97.7 0.00031 1.4E-08 43.3 9.4 35 105-139 150-184 (325) 189 1trb_A Thioredoxin reductase; 97.7 0.00067 3E-08 41.2 11.1 34 106-139 144-177 (320) 190 2vq7_A Flavin-containing monoo 97.7 0.00037 1.6E-08 42.8 9.7 33 106-138 201-233 (461) 191 1zmd_A Dihydrolipoyl dehydroge 97.6 8.7E-05 3.9E-09 46.8 6.0 101 104-275 175-280 (474) 192 2r9z_A Glutathione amide reduc 97.5 0.00012 5.4E-09 45.8 5.8 99 105-275 164-262 (463) 193 1ojt_A Surface protein; redox- 97.5 0.00012 5.3E-09 45.9 5.5 99 105-276 183-285 (482) 194 1onf_A GR, grase, glutathione 97.4 0.00022 9.8E-09 44.2 5.6 99 105-275 174-273 (500) 195 3l8k_A Dihydrolipoyl dehydroge 97.4 0.00024 1.1E-08 44.0 5.8 38 104-141 169-206 (466) 196 3dgz_A Thioredoxin reductase 2 97.4 0.00033 1.5E-08 43.1 6.2 100 104-276 182-286 (488) 197 3f8d_A Thioredoxin reductase ( 97.3 0.0025 1.1E-07 37.7 10.0 47 500-547 272-321 (323) 198 2qae_A Lipoamide, dihydrolipoy 97.3 0.00041 1.8E-08 42.5 5.8 100 105-276 172-275 (468) 199 1ebd_A E3BD, dihydrolipoamide 97.3 0.00045 2E-08 42.3 6.0 99 105-275 168-268 (455) 200 1xdi_A RV3303C-LPDA; reductase 97.3 0.00048 2.1E-08 42.1 6.0 99 104-275 179-277 (499) 201 1fl2_A Alkyl hydroperoxide red 97.2 0.0018 8E-08 38.5 8.3 46 500-546 262-308 (310) 202 3dk9_A Grase, GR, glutathione 97.2 0.00062 2.8E-08 41.4 5.9 99 105-275 185-291 (478) 203 1zk7_A HGII, reductase, mercur 97.2 0.00059 2.6E-08 41.5 5.7 99 104-277 173-271 (467) 204 2a87_A TRXR, TR, thioredoxin r 97.1 0.00053 2.3E-08 41.9 4.7 36 106-141 154-189 (335) 205 1ges_A Glutathione reductase; 97.0 0.0011 4.7E-08 40.0 5.8 99 105-275 165-263 (450) 206 3ef6_A Toluene 1,2-dioxygenase 97.0 0.00092 4.1E-08 40.3 5.4 112 106-291 142-253 (410) 207 2q0l_A TRXR, thioredoxin reduc 97.0 0.00089 4E-08 40.4 5.3 44 500-544 266-310 (311) 208 3c4n_A Uncharacterized protein 97.0 0.0077 3.4E-07 34.5 9.8 182 106-291 35-248 (405) 209 3i83_A 2-dehydropantoate 2-red 96.9 0.001 4.5E-08 40.1 5.0 35 106-140 1-35 (320) 210 1bg6_A N-(1-D-carboxylethyl)-L 96.9 0.00099 4.4E-08 40.1 4.6 36 107-142 4-39 (359) 211 3ics_A Coenzyme A-disulfide re 96.8 0.0019 8.4E-08 38.4 5.5 113 105-275 34-150 (588) 212 2uyy_A N-PAC protein; long-cha 96.8 0.0022 9.6E-08 38.0 5.7 59 84-142 7-65 (316) 213 2gqw_A Ferredoxin reductase; f 96.7 0.0025 1.1E-07 37.6 5.8 98 105-278 143-240 (408) 214 2vdc_G Glutamate synthase [NAD 96.7 0.0034 1.5E-07 36.8 6.4 49 497-546 398-447 (456) 215 2cdu_A NADPH oxidase; flavoenz 96.7 0.0025 1.1E-07 37.6 5.5 110 109-275 2-115 (452) 216 3hn2_A 2-dehydropantoate 2-red 96.7 0.0015 6.9E-08 38.9 4.3 35 106-140 1-35 (312) 217 1evy_A Glycerol-3-phosphate de 96.6 0.00088 3.9E-08 40.4 3.0 33 108-140 16-48 (366) 218 3ghy_A Ketopantoate reductase 96.6 0.0022 9.6E-08 38.0 4.9 33 108-140 4-36 (335) 219 2ew2_A 2-dehydropantoate 2-red 96.6 0.0021 9.2E-08 38.1 4.8 34 107-140 3-36 (316) 220 2jae_A L-amino acid oxidase; o 96.6 0.0014 6.1E-08 39.2 3.9 40 506-545 448-488 (489) 221 2yqu_A 2-oxoglutarate dehydrog 96.6 0.0037 1.7E-07 36.5 5.8 36 109-144 3-38 (455) 222 1yqz_A Coenzyme A disulfide re 96.5 0.003 1.4E-07 37.1 5.2 93 107-276 148-240 (438) 223 2g1u_A Hypothetical protein TM 96.5 0.0066 2.9E-07 35.0 6.9 42 103-144 15-56 (155) 224 3c7a_A Octopine dehydrogenase; 96.5 0.0017 7.3E-08 38.7 3.8 38 106-143 1-39 (404) 225 1q1r_A Putidaredoxin reductase 96.5 0.0046 2.1E-07 35.9 5.8 103 105-278 147-251 (431) 226 3fg2_P Putative rubredoxin red 96.4 0.0043 1.9E-07 36.1 5.4 106 107-275 1-108 (404) 227 3gg2_A Sugar dehydrogenase, UD 96.3 0.0042 1.9E-07 36.2 4.8 36 106-141 1-36 (450) 228 3hwr_A 2-dehydropantoate 2-red 96.3 0.0034 1.5E-07 36.8 4.2 35 107-141 19-53 (318) 229 2hmt_A YUAA protein; RCK, KTN, 96.3 0.0037 1.7E-07 36.5 4.5 36 107-142 6-41 (144) 230 1ks9_A KPA reductase;, 2-dehyd 96.3 0.0053 2.4E-07 35.6 5.2 36 109-144 2-37 (291) 231 3g17_A Similar to 2-dehydropan 96.2 0.0038 1.7E-07 36.5 4.2 36 106-141 1-36 (294) 232 3ius_A Uncharacterized conserv 96.2 0.0046 2.1E-07 35.9 4.6 37 104-140 2-38 (286) 233 1z82_A Glycerol-3-phosphate de 96.2 0.0037 1.7E-07 36.5 4.0 40 103-142 10-49 (335) 234 1lqt_A FPRA; NADP+ derivative, 96.2 0.05 2.2E-06 29.4 10.4 24 106-129 146-169 (456) 235 3fwz_A Inner membrane protein 96.2 0.008 3.6E-07 34.4 5.6 40 103-142 3-42 (140) 236 1f0y_A HCDH, L-3-hydroxyacyl-C 96.1 0.005 2.2E-07 35.7 4.5 37 106-142 14-50 (302) 237 2raf_A Putative dinucleotide-b 96.1 0.0071 3.2E-07 34.8 5.1 35 107-141 19-53 (209) 238 3dtt_A NADP oxidoreductase; YP 96.1 0.006 2.7E-07 35.2 4.7 34 108-141 20-53 (245) 239 2v3a_A Rubredoxin reductase; a 96.1 0.01 4.7E-07 33.7 6.0 99 107-277 145-243 (384) 240 2z3y_A Lysine-specific histone 96.1 0.0036 1.6E-07 36.6 3.5 41 505-545 619-661 (662) 241 3k96_A Glycerol-3-phosphate de 96.0 0.0072 3.2E-07 34.7 4.8 39 104-142 26-64 (356) 242 1lss_A TRK system potassium up 96.0 0.0066 2.9E-07 35.0 4.5 38 107-144 4-41 (140) 243 3itj_A Thioredoxin reductase 1 95.9 0.0055 2.4E-07 35.5 3.7 45 499-544 291-336 (338) 244 3cty_A Thioredoxin reductase; 95.8 0.047 2.1E-06 29.6 8.4 33 109-141 18-50 (319) 245 2dwc_A PH0318, 433AA long hypo 95.8 0.018 8.2E-07 32.2 6.2 42 101-142 13-54 (433) 246 3llv_A Exopolyphosphatase-rela 95.7 0.012 5.4E-07 33.3 4.9 40 104-143 3-42 (141) 247 2dpo_A L-gulonate 3-dehydrogen 95.7 0.01 4.4E-07 33.8 4.4 36 106-141 5-40 (319) 248 3eyw_A C-terminal domain of gl 95.6 0.014 6.1E-07 33.0 4.8 36 107-142 4-39 (413) 249 1gte_A Dihydropyrimidine dehyd 95.6 0.014 6.3E-07 32.9 4.8 99 105-279 330-444 (1025) 250 1zcj_A Peroxisomal bifunctiona 95.6 0.042 1.9E-06 29.9 7.2 37 106-142 36-72 (463) 251 1sez_A Protoporphyrinogen oxid 95.6 0.0068 3E-07 34.9 3.1 39 506-545 458-496 (504) 252 2vvm_A Monoamine oxidase N; FA 95.5 0.01 4.5E-07 33.8 3.9 43 107-149 39-81 (495) 253 2rir_A Dipicolinate synthase, 95.5 0.019 8.3E-07 32.1 5.3 31 107-137 7-37 (300) 254 3ic5_A Putative saccharopine d 95.5 0.015 6.6E-07 32.7 4.7 38 104-141 2-40 (118) 255 1o94_A Tmadh, trimethylamine d 95.5 0.02 8.9E-07 31.9 5.3 39 500-540 659-697 (729) 256 3iwa_A FAD-dependent pyridine 95.4 0.024 1.1E-06 31.5 5.6 113 106-292 158-271 (472) 257 1mv8_A GMD, GDP-mannose 6-dehy 95.4 0.0098 4.4E-07 33.9 3.6 33 109-141 2-34 (436) 258 2wtb_A MFP2, fatty acid multif 95.4 0.031 1.4E-06 30.8 6.1 38 105-142 310-347 (725) 259 1yvv_A Amine oxidase, flavin-c 95.4 0.0076 3.4E-07 34.6 3.0 45 500-546 287-331 (336) 260 2jfg_A UDP-N-acetylmuramoylala 95.4 0.023 1E-06 31.6 5.3 36 107-142 6-41 (445) 261 3d4o_A Dipicolinate synthase s 95.3 0.024 1.1E-06 31.4 5.2 31 107-137 5-35 (293) 262 1vdc_A NTR, NADPH dependent th 95.3 0.018 7.9E-07 32.3 4.5 42 501-543 281-323 (333) 263 1aog_A Trypanothione reductase 95.2 0.034 1.5E-06 30.5 5.6 36 107-142 3-39 (485) 264 3h5n_A MCCB protein; ubiquitin 95.1 0.025 1.1E-06 31.4 4.9 33 106-138 117-150 (353) 265 2xag_A Lysine-specific histone 95.1 0.018 8.2E-07 32.2 4.2 41 506-546 791-833 (852) 266 3lk7_A UDP-N-acetylmuramoylala 95.1 0.023 1E-06 31.5 4.7 36 106-141 8-43 (451) 267 1id1_A Putative potassium chan 95.1 0.036 1.6E-06 30.4 5.6 36 106-141 2-37 (153) 268 3k5i_A Phosphoribosyl-aminoimi 95.1 0.056 2.5E-06 29.1 6.6 63 105-167 22-84 (403) 269 2x58_A Peroxisomal bifunctiona 95.1 0.038 1.7E-06 30.2 5.6 38 105-142 299-336 (727) 270 1lu9_A Methylene tetrahydromet 95.0 0.034 1.5E-06 30.5 5.2 34 106-139 118-152 (287) 271 2ivd_A PPO, PPOX, protoporphyr 94.9 0.0085 3.8E-07 34.3 1.9 52 220-274 238-291 (478) 272 1kjq_A GART 2, phosphoribosylg 94.8 0.077 3.4E-06 28.3 6.7 36 107-142 11-46 (391) 273 3ktd_A Prephenate dehydrogenas 94.8 0.037 1.6E-06 30.3 5.0 40 103-142 4-43 (341) 274 3l4b_C TRKA K+ channel protien 94.7 0.026 1.2E-06 31.2 4.0 34 109-142 2-35 (218) 275 3g79_A NDP-N-acetyl-D-galactos 94.7 0.037 1.6E-06 30.3 4.8 36 107-142 18-55 (478) 276 1ff9_A Saccharopine reductase; 94.6 0.033 1.5E-06 30.6 4.4 36 107-142 3-38 (450) 277 2pv7_A T-protein [includes: ch 94.6 0.061 2.7E-06 28.9 5.7 38 104-141 18-56 (298) 278 3gvi_A Malate dehydrogenase; N 94.6 0.051 2.3E-06 29.4 5.3 39 103-141 2-42 (324) 279 1wdk_A Fatty oxidation complex 94.5 0.041 1.8E-06 30.0 4.7 39 105-143 312-350 (715) 280 1kyq_A Met8P, siroheme biosynt 94.5 0.024 1.1E-06 31.4 3.6 32 106-137 12-43 (274) 281 3h8v_A Ubiquitin-like modifier 94.5 0.04 1.8E-06 30.1 4.6 33 107-139 36-69 (292) 282 3dii_A Short-chain dehydrogena 94.5 0.052 2.3E-06 29.3 5.2 36 106-141 1-37 (247) 283 1m6i_A Programmed cell death p 94.5 0.023 1E-06 31.5 3.4 113 106-292 179-295 (493) 284 2fzw_A Alcohol dehydrogenase c 94.5 0.054 2.4E-06 29.2 5.2 35 105-139 189-224 (373) 285 1cjc_A Protein (adrenodoxin re 94.5 0.021 9.2E-07 31.9 3.1 45 500-545 352-397 (460) 286 3d4o_A Dipicolinate synthase s 94.5 0.039 1.8E-06 30.1 4.5 26 266-291 156-181 (293) 287 1vg0_A RAB proteins geranylger 94.5 0.073 3.2E-06 28.4 5.9 54 221-274 379-434 (650) 288 3ego_A Probable 2-dehydropanto 94.5 0.041 1.8E-06 30.0 4.6 34 106-140 1-34 (307) 289 2iid_A L-amino-acid oxidase; f 94.5 0.023 1E-06 31.5 3.3 52 220-274 241-295 (498) 290 3l6d_A Putative oxidoreductase 94.4 0.064 2.8E-06 28.8 5.5 40 102-141 4-43 (306) 291 1piw_A Hypothetical zinc-type 94.4 0.06 2.7E-06 29.0 5.4 14 463-476 333-347 (360) 292 2jhf_A Alcohol dehydrogenase E 94.4 0.062 2.8E-06 28.8 5.4 33 106-138 191-224 (374) 293 2hjr_A Malate dehydrogenase; m 94.4 0.064 2.8E-06 28.8 5.4 39 104-142 11-50 (328) 294 1ur5_A Malate dehydrogenase; o 94.4 0.062 2.8E-06 28.9 5.3 36 106-141 1-37 (309) 295 1rsg_A FMS1 protein; FAD bindi 94.3 0.041 1.8E-06 30.0 4.3 53 220-274 202-254 (516) 296 2vns_A Metalloreductase steap3 94.3 0.051 2.3E-06 29.4 4.8 36 107-142 28-63 (215) 297 3c85_A Putative glutathione-re 94.2 0.064 2.9E-06 28.8 5.1 39 107-145 39-78 (183) 298 1p3d_A UDP-N-acetylmuramate--a 94.2 0.043 1.9E-06 29.8 4.2 36 107-142 18-54 (475) 299 1zej_A HBD-9, 3-hydroxyacyl-CO 94.1 0.043 1.9E-06 29.8 4.2 36 106-142 11-46 (293) 300 3dfz_A SIRC, precorrin-2 dehyd 94.1 0.051 2.3E-06 29.4 4.5 30 107-136 31-60 (223) 301 2f00_A UDP-N-acetylmuramate--L 94.1 0.037 1.6E-06 30.3 3.7 36 107-142 19-55 (491) 302 1jay_A Coenzyme F420H2:NADP+ o 94.1 0.05 2.2E-06 29.5 4.4 33 109-141 2-35 (212) 303 2r6j_A Eugenol synthase 1; phe 93.9 0.076 3.4E-06 28.3 5.0 39 103-141 7-46 (318) 304 2gv8_A Monooxygenase; FMO, FAD 93.8 0.054 2.4E-06 29.2 4.2 33 106-138 211-243 (447) 305 2v65_A LDH-A, L-lactate dehydr 93.8 0.11 4.7E-06 27.4 5.6 39 103-141 16-56 (331) 306 1w6u_A 2,4-dienoyl-COA reducta 93.8 0.18 7.9E-06 26.0 6.8 41 101-141 19-61 (302) 307 2hcy_A Alcohol dehydrogenase 1 93.8 0.13 6E-06 26.8 6.1 33 106-138 169-202 (347) 308 1jw9_B Molybdopterin biosynthe 93.7 0.07 3.1E-06 28.5 4.6 32 107-138 31-63 (249) 309 1kol_A Formaldehyde dehydrogen 93.7 0.098 4.4E-06 27.6 5.3 10 281-290 223-232 (398) 310 2o3j_A UDP-glucose 6-dehydroge 93.6 0.051 2.3E-06 29.4 3.7 36 106-141 8-45 (481) 311 3gpi_A NAD-dependent epimerase 93.6 0.12 5.3E-06 27.1 5.6 35 107-141 3-37 (286) 312 1dlj_A UDP-glucose dehydrogena 93.6 0.05 2.2E-06 29.4 3.7 32 109-141 2-33 (402) 313 1x13_A NAD(P) transhydrogenase 93.5 0.079 3.5E-06 28.2 4.5 32 108-139 173-204 (401) 314 2rir_A Dipicolinate synthase, 93.5 0.087 3.9E-06 27.9 4.7 22 268-289 160-181 (300) 315 2q3e_A UDP-glucose 6-dehydroge 93.4 0.049 2.2E-06 29.5 3.4 34 108-141 6-41 (467) 316 1txg_A Glycerol-3-phosphate de 93.4 0.08 3.6E-06 28.2 4.4 31 109-139 2-32 (335) 317 3eag_A UDP-N-acetylmuramate:L- 93.3 0.12 5.2E-06 27.1 5.2 34 106-139 3-37 (326) 318 2we8_A Xanthine dehydrogenase; 93.3 0.13 6E-06 26.8 5.5 26 266-291 205-230 (386) 319 2vhw_A Alanine dehydrogenase; 93.3 0.17 7.6E-06 26.1 5.9 30 108-137 169-198 (377) 320 1zud_1 Adenylyltransferase THI 93.2 0.094 4.2E-06 27.7 4.6 32 107-138 28-60 (251) 321 1j6u_A UDP-N-acetylmuramate-al 93.2 0.096 4.3E-06 27.7 4.6 35 107-141 12-47 (469) 322 1ja9_A 4HNR, 1,3,6,8-tetrahydr 93.2 0.17 7.8E-06 26.0 5.9 46 94-139 7-54 (274) 323 1rpn_A GDP-mannose 4,6-dehydra 93.2 0.14 6.2E-06 26.6 5.4 40 104-143 11-51 (335) 324 2qyt_A 2-dehydropantoate 2-red 93.2 0.043 1.9E-06 29.9 2.7 35 107-141 8-48 (317) 325 1t2d_A LDH-P, L-lactate dehydr 93.2 0.15 6.8E-06 26.4 5.6 36 106-141 3-39 (322) 326 1pzg_A LDH, lactate dehydrogen 93.1 0.17 7.4E-06 26.2 5.7 37 105-141 7-44 (331) 327 2axq_A Saccharopine dehydrogen 93.1 0.063 2.8E-06 28.8 3.6 40 103-142 19-59 (467) 328 2dph_A Formaldehyde dismutase; 93.1 0.12 5.4E-06 27.0 5.0 10 281-290 223-232 (398) 329 1pjc_A Protein (L-alanine dehy 93.0 0.2 9.1E-06 25.6 6.1 32 107-138 167-198 (361) 330 1tt5_B Ubiquitin-activating en 93.0 0.13 5.8E-06 26.8 5.1 33 107-139 40-73 (434) 331 1qyc_A Phenylcoumaran benzylic 93.0 0.12 5.4E-06 27.1 4.9 37 106-142 3-40 (308) 332 2i6t_A Ubiquitin-conjugating e 93.0 0.097 4.3E-06 27.6 4.4 36 107-142 14-51 (303) 333 1ez4_A Lactate dehydrogenase; 93.0 0.12 5.5E-06 27.0 4.9 35 107-141 5-41 (318) 334 3bmj_A Pteridine reductase; PT 93.0 0.14 6.4E-06 26.6 5.2 38 103-140 18-57 (288) 335 3hn7_A UDP-N-acetylmuramate-L- 93.0 0.12 5.3E-06 27.1 4.8 34 107-140 19-53 (524) 336 1vpd_A Tartronate semialdehyde 92.7 0.083 3.7E-06 28.1 3.7 37 105-141 3-39 (299) 337 2zqz_A L-LDH, L-lactate dehydr 92.7 0.15 6.7E-06 26.4 5.0 37 104-140 6-44 (326) 338 3i6i_A Putative leucoanthocyan 92.7 0.19 8.3E-06 25.9 5.5 37 105-141 8-45 (346) 339 3gr6_A Enoyl-[acyl-carrier-pro 92.6 0.12 5.5E-06 27.0 4.5 36 107-142 10-48 (260) 340 1pjq_A CYSG, siroheme synthase 92.6 0.13 5.7E-06 26.9 4.6 32 107-138 12-43 (457) 341 1hdo_A Biliverdin IX beta redu 92.6 0.16 7.3E-06 26.2 5.1 35 107-141 3-38 (206) 342 3ip1_A Alcohol dehydrogenase, 92.6 0.19 8.7E-06 25.7 5.5 32 105-136 212-243 (404) 343 2eez_A Alanine dehydrogenase; 92.6 0.23 1E-05 25.3 5.8 30 108-137 167-196 (369) 344 3c24_A Putative oxidoreductase 92.6 0.13 5.7E-06 26.9 4.5 37 106-142 10-47 (286) 345 2f1k_A Prephenate dehydrogenas 92.5 0.12 5.4E-06 27.0 4.3 35 109-143 2-36 (279) 346 3ew7_A LMO0794 protein; Q8Y8U8 92.5 0.17 7.6E-06 26.1 5.1 33 109-141 2-35 (221) 347 2hk9_A Shikimate dehydrogenase 92.5 0.16 7.3E-06 26.2 5.0 22 268-289 132-153 (275) 348 2ewd_A Lactate dehydrogenase,; 92.5 0.18 7.9E-06 26.0 5.1 35 107-141 4-39 (317) 349 1l7d_A Nicotinamide nucleotide 92.4 0.17 7.4E-06 26.2 4.9 34 258-291 165-198 (384) 350 1rjw_A ADH-HT, alcohol dehydro 92.4 0.11 5E-06 27.3 4.0 10 108-117 65-74 (339) 351 1nyt_A Shikimate 5-dehydrogena 92.4 0.22 9.6E-06 25.5 5.5 23 267-289 121-143 (271) 352 6ldh_A M4 APO-lactate dehydrog 92.4 0.28 1.3E-05 24.7 6.0 34 107-140 21-56 (330) 353 3dhn_A NAD-dependent epimerase 92.3 0.25 1.1E-05 25.1 5.7 34 107-140 4-38 (227) 354 1uay_A Type II 3-hydroxyacyl-C 92.3 0.2 8.7E-06 25.7 5.1 36 106-141 1-37 (242) 355 3lov_A Protoporphyrinogen oxid 92.2 0.052 2.3E-06 29.4 2.1 52 219-274 235-286 (475) 356 3eth_A Phosphoribosylaminoimid 92.2 0.17 7.6E-06 26.1 4.8 35 108-142 2-36 (355) 357 3h28_A Sulfide-quinone reducta 92.2 0.069 3.1E-06 28.6 2.7 58 221-281 201-260 (430) 358 1qor_A Quinone oxidoreductase; 92.1 0.14 6.4E-06 26.6 4.3 29 108-136 142-171 (327) 359 2ekp_A 2-deoxy-D-gluconate 3-d 92.1 0.22 1E-05 25.4 5.3 36 106-141 1-37 (239) 360 1y6j_A L-lactate dehydrogenase 92.0 0.23 1E-05 25.3 5.3 35 106-140 6-42 (318) 361 2gas_A Isoflavone reductase; N 92.0 0.18 7.9E-06 26.0 4.6 36 107-142 2-38 (307) 362 1y8q_B Anthracycline-, ubiquit 92.0 0.19 8.5E-06 25.8 4.8 33 107-139 17-50 (640) 363 2yr5_A Pro-enzyme of L-phenyla 92.0 0.084 3.7E-06 28.0 2.9 42 508-549 644-686 (721) 364 3ce6_A Adenosylhomocysteinase; 91.9 0.18 7.8E-06 26.0 4.6 27 441-473 440-467 (494) 365 2pd4_A Enoyl-[acyl-carrier-pro 91.9 0.16 7.2E-06 26.2 4.4 38 107-144 6-46 (275) 366 3ftp_A 3-oxoacyl-[acyl-carrier 91.7 0.33 1.5E-05 24.3 5.8 43 99-141 19-63 (270) 367 3h8l_A NADH oxidase; membrane 91.7 0.15 6.5E-06 26.5 4.0 58 219-281 217-274 (409) 368 1qyd_A Pinoresinol-lariciresin 91.7 0.22 9.9E-06 25.4 4.9 36 107-142 4-40 (313) 369 3d1l_A Putative NADP oxidoredu 91.7 0.17 7.7E-06 26.1 4.3 34 107-140 10-44 (266) 370 1e3i_A Alcohol dehydrogenase, 91.7 0.29 1.3E-05 24.7 5.4 10 109-118 72-81 (376) 371 1ek6_A UDP-galactose 4-epimera 91.6 0.3 1.3E-05 24.5 5.5 36 106-141 1-37 (348) 372 2nm0_A Probable 3-oxacyl-(acyl 91.6 0.34 1.5E-05 24.2 5.7 40 105-144 19-59 (253) 373 1lld_A L-lactate dehydrogenase 91.6 0.25 1.1E-05 25.1 5.1 35 106-140 6-42 (319) 374 3h2s_A Putative NADH-flavin re 91.6 0.24 1.1E-05 25.1 5.0 32 109-140 2-34 (224) 375 3h9u_A Adenosylhomocysteinase; 91.6 0.2 9.1E-06 25.6 4.6 11 265-275 266-276 (436) 376 3imf_A Short chain dehydrogena 91.5 0.34 1.5E-05 24.2 5.7 37 105-141 3-41 (257) 377 3fi9_A Malate dehydrogenase; s 91.5 0.26 1.2E-05 24.9 5.0 34 107-140 8-44 (343) 378 1hxh_A 3BETA/17BETA-hydroxyste 91.5 0.34 1.5E-05 24.2 5.6 37 105-141 3-41 (253) 379 2ldx_A APO-lactate dehydrogena 91.4 0.33 1.5E-05 24.3 5.5 34 107-140 19-54 (331) 380 2gjc_A Thiazole biosynthetic e 91.4 0.094 4.2E-06 27.7 2.7 43 502-544 277-326 (326) 381 3d0o_A L-LDH 1, L-lactate dehy 91.3 0.26 1.2E-05 25.0 4.9 35 106-140 5-41 (317) 382 1ldn_A L-lactate dehydrogenase 91.3 0.28 1.2E-05 24.8 5.1 35 106-140 5-41 (316) 383 1xgk_A Nitrogen metabolite rep 91.3 0.39 1.7E-05 23.8 5.8 36 106-141 4-40 (352) 384 3d64_A Adenosylhomocysteinase; 91.3 0.24 1.1E-05 25.1 4.7 24 268-291 280-303 (494) 385 2z04_A Phosphoribosylaminoimid 91.3 0.25 1.1E-05 25.1 4.8 35 108-142 2-36 (365) 386 3ggo_A Prephenate dehydrogenas 91.3 0.22 9.8E-06 25.4 4.5 37 106-142 32-70 (314) 387 3c1o_A Eugenol synthase; pheny 91.2 0.26 1.2E-05 25.0 4.8 37 106-142 3-40 (321) 388 2ehd_A Oxidoreductase, oxidore 91.2 0.21 9.4E-06 25.5 4.3 37 105-141 3-40 (234) 389 1hyh_A L-hicdh, L-2-hydroxyiso 91.2 0.26 1.1E-05 25.0 4.7 35 107-141 1-37 (309) 390 3goh_A Alcohol dehydrogenase, 91.0 0.26 1.2E-05 25.0 4.6 30 106-135 142-171 (315) 391 2gf2_A Hibadh, 3-hydroxyisobut 90.9 0.23 1E-05 25.2 4.4 34 109-142 2-35 (296) 392 2bgk_A Rhizome secoisolaricire 90.8 0.47 2.1E-05 23.3 5.8 38 104-141 12-51 (278) 393 1vi2_A Shikimate 5-dehydrogena 90.7 0.56 2.5E-05 22.9 6.1 31 108-138 127-158 (300) 394 2zyd_A 6-phosphogluconate dehy 90.7 0.27 1.2E-05 24.8 4.5 129 105-245 13-141 (480) 395 1y8q_A Ubiquitin-like 1 activa 90.6 0.31 1.4E-05 24.5 4.7 32 107-138 36-68 (346) 396 2p4q_A 6-phosphogluconate dehy 90.6 0.43 1.9E-05 23.6 5.4 131 103-246 6-138 (497) 397 2egg_A AROE, shikimate 5-dehyd 90.5 0.37 1.7E-05 24.0 5.1 23 267-289 143-165 (297) 398 1d7o_A Enoyl-[acyl-carrier pro 90.5 0.3 1.3E-05 24.5 4.6 34 107-140 8-44 (297) 399 1yqd_A Sinapyl alcohol dehydro 90.4 0.49 2.2E-05 23.2 5.6 11 107-117 79-89 (366) 400 3g0o_A 3-hydroxyisobutyrate de 90.3 0.31 1.4E-05 24.4 4.6 36 107-142 7-42 (303) 401 3cky_A 2-hydroxymethyl glutara 90.2 0.21 9.3E-06 25.5 3.6 35 108-142 5-39 (301) 402 1yj8_A Glycerol-3-phosphate de 90.2 0.3 1.3E-05 24.6 4.3 35 108-142 22-63 (375) 403 1x0v_A GPD-C, GPDH-C, glycerol 90.1 0.23 1E-05 25.2 3.8 37 107-143 8-51 (354) 404 3doj_A AT3G25530, dehydrogenas 90.0 0.7 3.1E-05 22.3 9.5 36 107-142 21-56 (310) 405 2dkn_A 3-alpha-hydroxysteroid 90.0 0.53 2.4E-05 23.0 5.5 32 110-141 4-36 (255) 406 1guz_A Malate dehydrogenase; o 90.0 0.45 2E-05 23.5 5.1 33 109-141 2-36 (310) 407 3gvp_A Adenosylhomocysteinase 89.9 0.35 1.6E-05 24.1 4.6 11 265-275 275-285 (435) 408 1ooe_A Dihydropteridine reduct 89.9 0.38 1.7E-05 23.9 4.7 35 107-141 3-38 (236) 409 1geg_A Acetoin reductase; SDR 89.9 0.47 2.1E-05 23.4 5.2 35 106-140 1-36 (256) 410 1yb1_A 17-beta-hydroxysteroid 89.9 0.66 2.9E-05 22.4 5.9 38 104-141 27-66 (272) 411 2b4q_A Rhamnolipids biosynthes 89.9 0.52 2.3E-05 23.1 5.4 36 106-141 27-64 (276) 412 3h7a_A Short chain dehydrogena 89.8 0.52 2.3E-05 23.1 5.3 35 107-141 7-42 (252) 413 1v8b_A Adenosylhomocysteinase; 89.8 0.32 1.4E-05 24.4 4.3 23 442-470 426-449 (479) 414 1rkx_A CDP-glucose-4,6-dehydra 89.7 0.59 2.6E-05 22.7 5.5 37 106-142 8-45 (357) 415 1smk_A Malate dehydrogenase, g 89.6 0.35 1.5E-05 24.2 4.3 35 106-140 7-44 (326) 416 1wly_A CAAR, 2-haloacrylate re 89.5 0.24 1.1E-05 25.2 3.5 28 109-136 148-176 (333) 417 2h78_A Hibadh, 3-hydroxyisobut 89.5 0.27 1.2E-05 24.8 3.7 35 108-142 4-38 (302) 418 1tt5_A APPBP1, amyloid protein 89.4 0.38 1.7E-05 23.9 4.4 32 107-138 32-64 (531) 419 1h5q_A NADP-dependent mannitol 89.3 0.54 2.4E-05 23.0 5.1 36 107-142 14-50 (265) 420 2pzm_A Putative nucleotide sug 89.3 0.52 2.3E-05 23.1 5.0 37 103-139 16-53 (330) 421 1qsg_A Enoyl-[acyl-carrier-pro 89.2 0.38 1.7E-05 23.9 4.3 37 107-143 9-48 (265) 422 1iow_A DD-ligase, DDLB, D-ALA\ 89.2 0.38 1.7E-05 23.9 4.3 36 106-141 1-45 (306) 423 2p4h_X Vestitone reductase; NA 89.2 0.57 2.5E-05 22.8 5.2 36 108-143 2-38 (322) 424 1yxm_A Pecra, peroxisomal tran 89.1 0.81 3.6E-05 21.9 5.9 39 103-141 13-53 (303) 425 1a5z_A L-lactate dehydrogenase 89.1 0.44 2E-05 23.5 4.5 32 109-140 2-35 (319) 426 1leh_A Leucine dehydrogenase; 89.0 0.51 2.2E-05 23.1 4.8 24 269-292 177-200 (364) 427 2v7p_A L-lactate dehydrogenase 89.0 0.52 2.3E-05 23.1 4.8 32 109-140 2-35 (310) 428 2c07_A 3-oxoacyl-(acyl-carrier 88.9 0.55 2.4E-05 22.9 4.9 36 106-141 42-79 (285) 429 2v6b_A L-LDH, L-lactate dehydr 88.9 0.53 2.3E-05 23.0 4.8 32 109-140 2-35 (304) 430 2g5c_A Prephenate dehydrogenas 88.9 0.45 2E-05 23.5 4.5 36 108-143 2-39 (281) 431 2dq4_A L-threonine 3-dehydroge 88.9 0.75 3.4E-05 22.1 5.6 30 107-136 165-194 (343) 432 1ps9_A 2,4-dienoyl-COA reducta 88.8 0.19 8.5E-06 25.8 2.5 34 503-538 636-671 (671) 433 1yb4_A Tartronic semialdehyde 88.8 0.29 1.3E-05 24.6 3.5 34 109-142 5-38 (295) 434 2jjy_A Enoyl-[acyl-carrier-pro 88.8 0.49 2.2E-05 23.2 4.6 35 107-141 6-43 (268) 435 3krt_A Crotonyl COA reductase; 88.8 0.62 2.8E-05 22.6 5.1 20 116-135 239-258 (456) 436 2qio_A Enoyl-(acyl-carrier-pro 88.7 0.57 2.6E-05 22.8 4.9 36 107-142 6-44 (256) 437 2nlo_A Shikimate dehydrogenase 88.7 0.62 2.8E-05 22.6 5.1 23 267-289 148-170 (302) 438 2cfc_A 2-(R)-hydroxypropyl-COM 88.7 0.68 3E-05 22.3 5.3 36 106-141 1-37 (250) 439 2z1n_A Dehydrogenase; reductas 88.6 0.56 2.5E-05 22.9 4.8 35 107-141 7-42 (260) 440 3ek2_A Enoyl-(acyl-carrier-pro 88.6 0.41 1.8E-05 23.7 4.1 37 107-143 14-53 (271) 441 3k31_A Enoyl-(acyl-carrier-pro 88.5 0.47 2.1E-05 23.3 4.4 36 107-142 30-68 (296) 442 3ctm_A Carbonyl reductase; alc 88.5 0.81 3.6E-05 21.8 5.6 36 107-142 34-70 (279) 443 1mld_A Malate dehydrogenase; o 88.5 0.44 2E-05 23.5 4.2 33 108-140 1-36 (314) 444 1uls_A Putative 3-oxoacyl-acyl 88.4 0.84 3.7E-05 21.8 5.6 34 108-141 6-40 (245) 445 1gu7_A 2,4-dienoyl-COA reducta 88.3 0.93 4.1E-05 21.5 6.0 10 344-353 264-273 (364) 446 1hwx_A GDH, glutamate dehydrog 88.2 0.81 3.6E-05 21.8 5.4 21 272-292 251-271 (501) 447 3iup_A Putative NADPH:quinone 88.2 0.47 2.1E-05 23.3 4.2 19 107-125 67-85 (379) 448 1bgv_A Glutamate dehydrogenase 88.1 0.46 2E-05 23.4 4.1 21 272-292 237-257 (449) 449 3ijr_A Oxidoreductase, short c 88.1 0.95 4.2E-05 21.4 6.0 40 102-141 41-82 (291) 450 1f8f_A Benzyl alcohol dehydrog 88.0 0.72 3.2E-05 22.2 5.0 14 106-119 67-80 (371) 451 1v9l_A Glutamate dehydrogenase 87.9 0.61 2.7E-05 22.6 4.7 18 27-44 12-29 (421) 452 3grk_A Enoyl-(acyl-carrier-pro 87.8 0.68 3E-05 22.3 4.8 35 107-141 31-68 (293) 453 2h7i_A Enoyl-[acyl-carrier-pro 87.8 0.64 2.9E-05 22.5 4.7 34 107-140 7-43 (269) 454 3i1j_A Oxidoreductase, short c 87.8 0.99 4.4E-05 21.3 6.1 39 103-141 9-49 (247) 455 2qq5_A DHRS1, dehydrogenase/re 87.7 0.67 3E-05 22.4 4.8 37 105-141 2-40 (260) 456 1nff_A Putative oxidoreductase 87.7 0.97 4.3E-05 21.4 5.6 36 106-141 5-42 (260) 457 2nvu_B Maltose binding protein 87.7 0.66 2.9E-05 22.4 4.7 32 107-138 411-443 (805) 458 2z1m_A GDP-D-mannose dehydrata 87.7 0.86 3.8E-05 21.7 5.3 34 107-140 3-37 (345) 459 1cyd_A Carbonyl reductase; sho 87.7 0.7 3.1E-05 22.3 4.8 35 107-141 7-42 (244) 460 1xg5_A ARPG836; short chain de 87.6 1 4.5E-05 21.2 6.0 36 105-140 29-66 (279) 461 2d4a_B Malate dehydrogenase; a 87.6 0.71 3.2E-05 22.2 4.8 32 110-141 2-34 (308) 462 2bma_A Glutamate dehydrogenase 87.5 0.52 2.3E-05 23.1 4.1 23 269-291 256-278 (470) 463 2d5c_A AROE, shikimate 5-dehyd 87.3 1 4.5E-05 21.3 5.4 24 266-289 117-140 (263) 464 3a28_C L-2.3-butanediol dehydr 87.2 0.72 3.2E-05 22.2 4.7 33 109-141 3-37 (258) 465 1fjh_A 3alpha-hydroxysteroid d 87.2 1 4.4E-05 21.3 5.4 31 110-140 3-35 (257) 466 1i36_A Conserved hypothetical 87.2 0.71 3.2E-05 22.2 4.6 36 109-144 2-37 (264) 467 2dtx_A Glucose 1-dehydrogenase 87.2 1.1 4.8E-05 21.1 5.8 36 108-143 9-45 (264) 468 3gem_A Short chain dehydrogena 87.1 0.87 3.9E-05 21.7 5.0 35 107-141 27-62 (260) 469 3gk3_A Acetoacetyl-COA reducta 87.0 1 4.6E-05 21.2 5.4 34 107-140 24-59 (269) 470 1p77_A Shikimate 5-dehydrogena 87.0 0.81 3.6E-05 21.9 4.8 22 267-288 121-142 (272) 471 1ulu_A Enoyl-acyl carrier prot 87.0 0.79 3.5E-05 21.9 4.8 36 107-142 8-46 (261) 472 2o2s_A Enoyl-acyl carrier redu 87.0 0.72 3.2E-05 22.2 4.5 34 107-140 9-45 (315) 473 3enk_A UDP-glucose 4-epimerase 86.9 1 4.4E-05 21.3 5.2 30 109-138 7-37 (341) 474 1hdc_A 3-alpha, 20 beta-hydrox 86.9 1.1 5E-05 21.0 5.6 35 107-141 5-40 (254) 475 1npy_A Hypothetical shikimate 86.9 0.83 3.7E-05 21.8 4.8 25 266-290 120-144 (271) 476 1g0o_A Trihydroxynaphthalene r 86.8 1.1 5.1E-05 20.9 6.7 38 103-140 24-63 (283) 477 2jah_A Clavulanic acid dehydro 86.7 1.1 5.1E-05 20.9 5.7 38 104-141 3-42 (247) 478 1x1t_A D(-)-3-hydroxybutyrate 86.7 1.1 5E-05 20.9 5.4 33 108-140 5-38 (260) 479 1pgj_A 6PGDH, 6-PGDH, 6-phosph 86.5 0.77 3.4E-05 22.0 4.5 34 109-142 3-36 (478) 480 3ezl_A Acetoacetyl-COA reducta 86.5 0.88 3.9E-05 21.6 4.8 35 105-139 10-46 (256) 481 1c1d_A L-phenylalanine dehydro 86.5 0.89 3.9E-05 21.6 4.8 24 269-292 179-202 (355) 482 1oju_A MDH, malate dehydrogena 86.5 0.77 3.4E-05 22.0 4.5 32 109-140 2-35 (294) 483 3m1a_A Putative dehydrogenase; 86.4 1.1 5E-05 21.0 5.3 35 107-141 4-40 (281) 484 2zat_A Dehydrogenase/reductase 86.4 1.2 5.3E-05 20.8 5.7 38 104-141 10-49 (260) 485 1uzm_A 3-oxoacyl-[acyl-carrier 86.4 1 4.4E-05 21.3 5.0 37 107-143 15-52 (247) 486 1vl8_A Gluconate 5-dehydrogena 86.4 1.2 5.3E-05 20.8 5.6 35 105-139 18-54 (267) 487 1o5i_A 3-oxoacyl-(acyl carrier 86.3 1.2 5.1E-05 20.9 5.3 34 106-139 18-52 (249) 488 2p91_A Enoyl-[acyl-carrier-pro 86.3 0.67 3E-05 22.4 4.1 40 106-145 20-62 (285) 489 3kvo_A Hydroxysteroid dehydrog 86.2 1.2 5.4E-05 20.7 6.3 45 101-145 38-84 (346) 490 2pd6_A Estradiol 17-beta-dehyd 86.1 1.2 5.5E-05 20.7 5.9 37 103-139 2-40 (264) 491 2wsb_A Galactitol dehydrogenas 86.1 0.94 4.2E-05 21.4 4.8 33 107-139 11-44 (254) 492 3fpf_A Mtnas, putative unchara 86.1 0.42 1.9E-05 23.7 3.0 36 105-140 121-156 (298) 493 1o89_A YHDH, B3253, YHDH; stru 86.0 0.96 4.3E-05 21.4 4.8 41 101-141 162-203 (345) 494 2j8z_A Quinone oxidoreductase; 85.9 0.95 4.3E-05 21.4 4.7 39 102-140 158-197 (354) 495 2o23_A HADH2 protein; HSD17B10 85.9 1.3 5.6E-05 20.7 5.5 36 106-141 11-47 (265) 496 2gdz_A NAD+-dependent 15-hydro 85.8 1.3 5.7E-05 20.6 5.8 37 103-139 2-40 (267) 497 2o7s_A DHQ-SDH, bifunctional 3 85.8 0.79 3.5E-05 21.9 4.3 32 107-138 364-395 (523) 498 3dqp_A Oxidoreductase YLBE; al 85.7 0.78 3.5E-05 22.0 4.2 33 109-141 2-35 (219) 499 2qhx_A Pteridine reductase 1; 85.7 1.3 5.7E-05 20.6 5.5 37 104-140 42-80 (328) 500 1dhr_A Dihydropteridine reduct 85.7 1.3 5.7E-05 20.6 5.3 35 107-141 7-42 (241) No 1 >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Probab=100.00 E-value=1e-38 Score=259.54 Aligned_cols=404 Identities=20% Similarity=0.227 Sum_probs=235.0 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCCCCCCCHHHH Q ss_conf 87767766898798799999999996599089983588832110100012435423602345541--3556521240455 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFG--EGGAGTFSDGKLY 180 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g--~ggag~fsdgkl~ 180 (549) .+.|.-.|||||+|||||+||+.|++.|++|+||||++.+|+++... +.++|+.+|......+. .+.++.+.... T Consensus 22 ~~~m~yDVvVIG~G~aGl~AA~~a~~~G~~V~llEK~~~~Gg~~~~s-GgG~~n~tn~~~~~~~~~~~~~~~~~l~~~-- 98 (447) T 2i0z_A 22 SNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAIS-GGGRCNVTNRLPLDEIVKHIPGNGRFLYSA-- 98 (447) T ss_dssp ---CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT-GGGTCCCEECSCHHHHHHTCTBTGGGGHHH-- T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHEEC-CCCCCCCCCCCCHHHHHHHCCCCHHHHHHH-- T ss_conf 68776897999954999999999986889889994898605454134-897600457876477873267760789989-- Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 32200021178999999966895100136764100012799999999999966988998134332040587589999867 Q T0604 181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 181 t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) ...+....+++|+.++|++......++.++.+.....+++.+..++.+.+++|+++++++.|..+++++++|++.+ T Consensus 99 ----l~~~~~~~~~~~~~~~Gv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~ 174 (447) T 2i0z_A 99 ----FSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQT 174 (447) T ss_dssp ----HHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETT T ss_pred ----HHCCCHHHHHHHHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEECC T ss_conf ----8729999999999985996157678867530571588999999988735813894335779998617513542011 Q ss_pred CCEEEECEEEEECCC-------CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEE Q ss_conf 848970568993188-------7679999999669711148745686430354554087636544666677665247876 Q T0604 261 GEEIKSRHVVLAVGH-------SARDTFEMLHERGVYMEAKPFSVGFRIEHKQSMIDEARFGPNAGHPILGAADYKLVHH 333 (549) Q Consensus 261 g~~i~ad~VVlAtGh-------sard~~~~l~~~Gi~~~~k~~a~G~rie~~~~~id~~q~g~~~~~~~l~~a~ykl~~~ 333 (549) +..+.++.||+|+|. +..++..++...+....+-. ..-+........+... ....+...+...... T Consensus 175 g~~~~~~~vi~a~Gg~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~ 247 (447) T 2i0z_A 175 GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELF-PTEVPILSNEPFIRDR------SLQGLALRDINLSVL 247 (447) T ss_dssp CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEE-ECSCCEECCCHHHHTT------TTTTCEEEEEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCCCCHHHHH------HCCCCCCCCCCEEEE T ss_conf 112246510013476445553668607899997488656663-2237754576066675------427742026505898 Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEECCCCHHHC---CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 58896326886167866887315786378788311112---666667347985034567777631025776999999996 Q T0604 334 CKNGRTVYSFCMCPGGTVVAATSEEGRVVTNGMSQYSR---AERNANSAIVVGISPEVDYPGDPLAGIRFQRELESNAYK 410 (549) Q Consensus 334 ~~~g~~v~tfcmcpgG~vv~~~s~~g~~~~nGmS~~~r---~~~~an~al~v~i~~~~~~~~~~l~g~~~q~~lE~~a~~ 410 (549) ...+.. ++...+..++....-.+....++-++... ...+.. +..... .....+... .++..++.+ .. T Consensus 248 ~~~g~~---~~~~~g~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~~~~~~~~~-~~ 317 (447) T 2i0z_A 248 NPKGKA---IISHKMDMLFTHFGLSGPAALRCSQFVVKALKKFKTNT--IQMSID--ALPEENSEQ--LFQRMLKQM-KE 317 (447) T ss_dssp C----C---EEEEEEEEEECSSEEESHHHHHHHHHHHHHHHHHCCSC--EEEEEE--SCTTSCHHH--HHHHHHHHH-TT T ss_pred CCCCCE---EEEECCCEEEECCCCCCCHHHCCCHHHHHHHHHHCCCC--EEEECC--CCCCCCHHH--HHHHHHHHH-HH T ss_conf 268855---11322643454144346334213399999998734684--222003--488889999--999999875-52 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHCHHHHHHHHHHHHHHCCCCCC---CCCCCCEEEEEE Q ss_conf 27876541343588884455421013443000576045262540318999999999886122205---524678379810 Q T0604 411 LGGENYDAPAQKIGDFLKGRDPSQLGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIK---GFASEDGLLTGV 487 (549) Q Consensus 411 ~gg~~~~~p~Q~~~dfl~~~~s~~~~~~~~s~~~~~~~~~L~~~lP~~v~~~l~~~l~~f~~~~~---Gf~~~ea~l~GV 487 (549) ... ........+++.......+. ........ .....+|++....|.+.++.|...+. +|..++++++|| T Consensus 318 ~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~l~~l~~~i~~~~~~~~g~~~~~~A~vT~GGV 389 (447) T 2i0z_A 318 DPK---KGIKNVLKGYVPERYFLFLL-EKNEIDGS----EQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVTGGGV 389 (447) T ss_dssp STT---SBHHHHTTTSSCHHHHHHHH-HHTTCCTT----SBGGGSCHHHHHHHHHHHHHEEEEECEECCGGGCSSEEEEE T ss_pred CCC---HHHHHHHHHHHHHHHHHHHH-HHCCCCHH----HEHHHCCHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCC T ss_conf 321---57777765431578999999-97288243----25543799999999999857866746878877379825850 Q ss_pred EECEECCEEECCCCCCCCCCCCCCEEECC---CCCHHHH--HHHHHHHHHHHHHHHHHHHHH Q ss_conf 01102662420488743026898542012---3533578--999999999999999999997 Q T0604 488 ETRTSSPVCIKRGKDFQSVNLKGFYPAGE---GAGYAGG--ILSAGIDGIKVAEAVARDIVA 544 (549) Q Consensus 488 Etr~ssPvri~r~~tleS~~i~GLY~~GE---gaGyagG--I~saa~~G~~~a~~i~~~~~~ 544 (549) +++.++| +|||++.|||||+||| .+|+.|| |..|.+.|..||+.+++++.. T Consensus 390 ~~~~id~------~t~E~k~IpGLYAAGEv~dv~G~~GGy~l~~a~~sGriAG~~AA~~~k~ 445 (447) T 2i0z_A 390 SVKEINP------KEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENAKM 445 (447) T ss_dssp CGGGEET------TTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHHC- T ss_pred CHHHCCH------HHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5212788------6760037998599896265733787899999999999999999999885 No 2 >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} Probab=100.00 E-value=1.4e-37 Score=252.49 Aligned_cols=368 Identities=17% Similarity=0.200 Sum_probs=197.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) -.||||||||||++||+.||++|++|+|||++.+.-++. .||+.++..+++++... +.... T Consensus 22 YDVIVIGaG~AG~~AA~~aAr~G~kVlLie~~~~~iG~~--------------~cnp~igg~gkg~l~~E-----idalg 82 (641) T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARM--------------SCNPAIGGVAKGQITRE-----IDALG 82 (641) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC--------------SSCSEEECHHHHHHHHH-----HHHHT T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--------------CCCCCCCHHHHHHHHHH-----HHHCC T ss_conf 895998947999999999997899789993798764616--------------55664562479999867-----88522 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCC------CEECCHHHHHHHHHHHHHHHC-CCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 1178999999966895100136764------100012799999999999966-988998134332040587589999867 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKP------HIGTFKLVTMIEKMRATIIEL-GGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kp------h~gtd~~~~vv~~L~~~l~~~-G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) . .......+.|....++...+. ....|+ ..+.+.|++.+++. +++|+.+ .|+++..+++++.+|++.+ T Consensus 83 g---~~~~~~d~~gi~~~~ln~~kgpAv~~~raq~Dr-~~y~~~~~~~L~~~~~v~i~~~-~V~~l~~~~~~v~gV~~~~ 157 (641) T 3cp8_A 83 G---EMGKAIDATGIQFRMLNRSKGPAMHSPRAQADK-TQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRS 157 (641) T ss_dssp C---SHHHHHHHHEEEEEEECSSSCTTTCEEEEEECH-HHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETT T ss_pred C---HHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCEEEEE-EEEEEEEECCEEEEEEECC T ss_conf 6---799999984016766541678751362766419-9999999999981899699984-7999985198676466134 Q ss_pred CCEEEECEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH-H-HH-HHCCCCCCCCCCCCCCCEEEEEC--- Q ss_conf 848970568993188767999999966971114874568643035455-4-08-76365446666776652478765--- Q T0604 261 GEEIKSRHVVLAVGHSARDTFEMLHERGVYMEAKPFSVGFRIEHKQSM-I-DE-ARFGPNAGHPILGAADYKLVHHC--- 334 (549) Q Consensus 261 g~~i~ad~VVlAtGhsard~~~~l~~~Gi~~~~k~~a~G~rie~~~~~-i-d~-~q~g~~~~~~~l~~a~ykl~~~~--- 334 (549) |+++.|+.||+|||..++++. ......+..|....++... + .. ..++........+. ...+.... T Consensus 158 g~~i~a~~VVlATGt~~~~~l--------~~g~~~~~~g~~~g~~~~~~ls~~L~~lg~~~~r~~tgt-~~r~~~~sid~ 228 (641) T 3cp8_A 158 GRAIQAKAAILACGTFLNGLI--------HIGMDHFPGGRSTAEPPVEGLTESLASLGFSFGRLKTGT-PPRIDSRSVDY 228 (641) T ss_dssp SCEEEEEEEEECCTTCBTCEE--------EETTEEEECSSSTTSCCBCSHHHHHHHTTCCEEEEEEEE-CCEEEGGGSCT T ss_pred CCEEECCEEEECCCCCCCCCE--------ECCHHCCCCHHHCCCCCCCCCCHHHHHCCCCCEEEEECC-CCCCCCCEEEC T ss_conf 768740369989788653310--------034011643232487645444077885066301244124-66334412305 Q ss_pred --------CCCCEEEEEEECCCCEEEEEECCCCEEEECCCCHHHCCCCCCCCEEEEEECCCC-CCCCCCCHHHHHHHHHH Q ss_conf --------889632688616786688731578637878831111266666734798503456-77776310257769999 Q T0604 335 --------KNGRTVYSFCMCPGGTVVAATSEEGRVVTNGMSQYSRAERNANSAIVVGISPEV-DYPGDPLAGIRFQRELE 405 (549) Q Consensus 335 --------~~g~~v~tfcmcpgG~vv~~~s~~g~~~~nGmS~~~r~~~~an~al~v~i~~~~-~~~~~~l~g~~~q~~lE 405 (549) ..+..+++|..++... ....+..+. +....++..+.-++.... +.......+.+||+++| T Consensus 229 ~~l~~q~Gd~~~~~fs~~~~~~~~---~~~l~~~~t--------~t~~~~~~~i~~~l~~~~~~~g~i~g~gpr~~~sie 297 (641) T 3cp8_A 229 TIVTEQPGDVDPVPFSFSSTSVAN---RNLVSCYLT--------KTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIE 297 (641) T ss_dssp TTSEEECCCSSCCCSSSSCCCCGG---GCCCCEEEE--------ECCHHHHHHHHTTTTTCTTCCC---------CCCSH T ss_pred CEEEEECCCCCCCCCCCCCCCCCC---HHHEECCCC--------CCCHHHHHHHHHCHHHCHHHHCCHHHHCCCCCCCHH T ss_conf 343676367763525503554456---755025355--------555789999984825342430021000354776077 Q ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE Q ss_conf 99996278765413435888844554210134430005760452625403189999999998861222055246783798 Q T0604 406 SNAYKLGGENYDAPAQKIGDFLKGRDPSQLGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFASEDGLLT 485 (549) Q Consensus 406 ~~a~~~gg~~~~~p~Q~~~dfl~~~~s~~~~~~~~s~~~~~~~~~L~~~lP~~v~~~l~~~l~~f~~~~~Gf~~~ea~l~ 485 (549) .+..+++....+.. |+.. +......+++++++++||..++..+. +.+|||.+++.+.+ T Consensus 298 ~ki~rf~dk~~~~i------~le~---------e~~~~~~iy~~G~stsLp~~~q~~i~-------r~IpGLE~A~i~r~ 355 (641) T 3cp8_A 298 DKISRFPDKSSHHI------FLEP---------EGTDTVEMYVNGFSTSLPEDIQIAGL-------RSIPGLEEAKMIRP 355 (641) T ss_dssp HHHHHCCSCSCCEE------EEEE---------SSTTCCEEEEETCCCCSCHHHHHHHH-------TTSTTCTTCCEEEC T ss_pred HHHHHCCCCCHHHH------HCCC---------HHCCCCEEEECCCHHHCCHHHHHHHH-------CCCCCHHHEEEECC T ss_conf 78642353112264------5050---------11438889546524428799999986-------25835433475047 Q ss_pred E--EEECEECCEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1--0011026624204887430268985420123533578999999999999999999997 Q T0604 486 G--VETRTSSPVCIKRGKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIVA 544 (549) Q Consensus 486 G--VEtr~ssPvri~r~~tleS~~i~GLY~~GEgaGyagGI~saa~~G~~~a~~i~~~~~~ 544 (549) | ||+++++|.++ ++|||||.++|||||||.+|+. |.+.||..|+-|+..+++++.. T Consensus 356 Gy~Veyd~idP~~L--~~TLEsK~i~GLF~AGqI~Gtt-Gy~eAaaqG~vAGiNAa~~~~g 413 (641) T 3cp8_A 356 GYAIEYDFFHPWQI--RSTMETRPVENLFFAGQINGTS-GYEEAAAQGLMAGINAVRKILG 413 (641) T ss_dssp CEEEEEEEECGGGB--CTTSBBSSSBTEEECSGGGTBC-CHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCEECEECCCCC--CCCCEECCCCCEEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHCC T ss_conf 63310021650246--8664432559979804326817-9999999999999999999669 No 3 >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A Probab=100.00 E-value=6.5e-34 Score=229.46 Aligned_cols=354 Identities=20% Similarity=0.247 Sum_probs=224.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .-.|+|||||.||+.||+.||++|++|.|+.... ...-...||+.++..+.|. |......- T Consensus 28 ~~dViVIGgGlAG~EAA~~~Ar~G~~v~L~a~~~--------------~~~aelvCsnS~gg~akG~-----L~~Eidal 88 (651) T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI--------------DTLGQMSCNPAIGGIGKGH-----LVKEVDAL 88 (651) T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG--------------GGTTCCSSSSEEESTTHHH-----HHHHHHHT T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC--------------CCEEEEECCCCCCCCCCCH-----HHHHHHHH T ss_conf 8858998987899999999981899879996564--------------5517976863358846107-----99999973 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCE------ECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 2117899999996689510013676410------0012799999999999966988998134332040587589999867 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHI------GTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~------gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) ...+ .......++...++...+... ..|+ ..+-+.+.+.+++...--..+..|++|..+++.++|+.+.+ T Consensus 89 ggl~---~~~ad~~~i~~r~ln~~kgpAv~alraqvDR-~~fs~~vt~~l~~~pni~v~~~eV~~l~~~~~~v~g~~~~~ 164 (651) T 3ces_A 89 GGLM---AKAIDQAGIQFRILNASKGPAVRATRAQADR-VLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQM 164 (651) T ss_dssp TCSH---HHHHHHHEEEEEEESTTSCGGGCEEEEEECH-HHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETT T ss_pred HHHH---HHHHHHHCCHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCEEEEEEEECEEECCCEEEEEECCC T ss_conf 5599---9999995157876356878770857888879-99999999999749995999834222251188777775079 Q ss_pred CCEEEECEEEEECCC--------------CHHHH-------HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 848970568993188--------------76799-------999996697111487456864303545540876365446 Q T0604 261 GEEIKSRHVVLAVGH--------------SARDT-------FEMLHERGVYMEAKPFSVGFRIEHKQSMIDEARFGPNAG 319 (549) Q Consensus 261 g~~i~ad~VVlAtGh--------------sard~-------~~~l~~~Gi~~~~k~~a~G~rie~~~~~id~~q~g~~~~ 319 (549) |..+.++.||+|||- .+|+. -..+.+.++.+ .++.+|.........||...+....+ T Consensus 165 ~~~~~~~~viittGtf~~g~~~~g~~~~~~g~~~~~~~~~l~~~~~~~~~~~--~r~ktgtppri~~~sid~~~~~~~~~ 242 (651) T 3ces_A 165 GLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRV--GRLKTGTPPRIDARTIDFSVLAQQHG 242 (651) T ss_dssp SEEEEEEEEEECCSTTTCCEEECC-------------CCHHHHHHHTTTCCE--EEECCEECCEEEGGGSCGGGSEEECC T ss_pred CCEEECCEEEEECCCCCCCHHHHCHHHHCCCCCCCCCCCCHHHHHHHHCCCH--HHHCCCCCCCCCCCCCCHHHHHHHCC T ss_conf 9851124258844655665566234552277455311243158887614121--01036898301475557687754125 Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEECCCCHHHCCCCCCCCEEEEEECCCC-CCCCCCCHHH Q ss_conf 666776652478765889632688616786688731578637878831111266666734798503456-7777631025 Q T0604 320 HPILGAADYKLVHHCKNGRTVYSFCMCPGGTVVAATSEEGRVVTNGMSQYSRAERNANSAIVVGISPEV-DYPGDPLAGI 398 (549) Q Consensus 320 ~~~l~~a~ykl~~~~~~g~~v~tfcmcpgG~vv~~~s~~g~~~~nGmS~~~r~~~~an~al~v~i~~~~-~~~~~~l~g~ 398 (549) ....+..++.-. ... ...+..| ++..+..+. +..... ++..+. +.+...-.|+ T Consensus 243 ~~~~~~~s~~~~--~~~-~~~~~~c-----~~~~t~~~~----------~~ii~~--------~~~~s~~~~G~i~~vGp 296 (651) T 3ces_A 243 DNPMPVFSFMGN--ASQ-HPQQVPC-----YITHTNEKT----------HDVIRS--------NLDRSPMYAGVIEGVGP 296 (651) T ss_dssp CSSCCCSSTTCC--GGG-SCCCCCE-----EEEECCHHH----------HHHHHH--------TGGGC------------ T ss_pred CCCCCCCCCCCC--CCC-CCCCCCC-----HHHHHCHHH----------HHHHHH--------CCCCCCCCCCCCCCCCC T ss_conf 688753233455--566-8451010-----655415999----------999970--------44546522667645788 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHCHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 77699999999627876541343588884455421013443000576045262540318999999999886122205524 Q T0604 399 RFQRELESNAYKLGGENYDAPAQKIGDFLKGRDPSQLGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFA 478 (549) Q Consensus 399 ~~q~~lE~~a~~~gg~~~~~p~Q~~~dfl~~~~s~~~~~~~~s~~~~~~~~~L~~~lP~~v~~~l~~~l~~f~~~~~Gf~ 478 (549) +||+++|.+..+++...++.+ ||+- .. .-...++++++++.||..+|..+. +.|||+. T Consensus 297 rycpsie~k~~rf~~r~~h~v------~Lep--Eg-------~~~~~~y~vGfqT~L~~~~Q~ri~-------r~IPGLE 354 (651) T 3ces_A 297 RYCPSIEDKVMRFADRNQHQI------FLEP--EG-------LTSNEIYPNGISTSLPFDVQMQIV-------RSMQGME 354 (651) T ss_dssp ---CCHHHHHHHSCSSSCCEE------EEEE--SC-------TTCCEEEEETCCCCSCHHHHHHHH-------HTSTTCT T ss_pred CCCCCHHHCCCCCCCCCCCCE------EECC--CC-------CCCCEEECCCCCCCCCHHHHHHHH-------HCCCCHH T ss_conf 999985550455776777501------4421--10-------478636106866778989999998-------6131310 Q ss_pred CCCEEEEE--EEECEECCEEECCCCCCCCCCCCCCEEECC--C-CCH----HHHHHHHHHHHHHHHHHHH Q ss_conf 67837981--001102662420488743026898542012--3-533----5789999999999999999 Q T0604 479 SEDGLLTG--VETRTSSPVCIKRGKDFQSVNLKGFYPAGE--G-AGY----AGGILSAGIDGIKVAEAVA 539 (549) Q Consensus 479 ~~ea~l~G--VEtr~ssPvri~r~~tleS~~i~GLY~~GE--g-aGy----agGI~saa~~G~~~a~~i~ 539 (549) +++.+.+| +|+++++|..+ +.|||+|.++||||||+ | .|| |+|| ++|+|||..+- T Consensus 355 nAef~R~G~~hrndfi~P~~L--~~tLe~K~~~~Lf~AGQI~GteGYeEAAAqGl----~AGiNAa~~~~ 418 (651) T 3ces_A 355 NAKIVRPGYAIEYDFFDPRDL--KPTLESKFIQGLFFAGQINGTTGYEEAAAQGL----LAGLNAARLSA 418 (651) T ss_dssp TCCEEECCEEEEEEEECGGGB--CTTSBBSSSBTEEECSGGGTCCCHHHHHHHHH----HHHHHHHHHHT T ss_pred HEEEEEEEEEEEEEEECHHCC--CCCCEEEEECCEEEECCCCCCHHHHHHHHHHH----HHHHHHHHHHC T ss_conf 035630001445203460005--76210245647687401037538889989799----99999999962 No 4 >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme MNMG; 5-carboxymethylaminomethyl uridine, wobble uridine, FAD, FAD-binding protein; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* Probab=100.00 E-value=2.3e-32 Score=219.79 Aligned_cols=360 Identities=19% Similarity=0.201 Sum_probs=221.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .-.|+|||||.||+.||+.||++|++|+|+|-..+ ..-...||+.++..+.| -|......- T Consensus 27 ~ydViVIGgGlAG~EAA~~~Ar~G~~v~L~em~~~--------------~~aelvCsnS~gg~akG-----~L~~Ei~aL 87 (637) T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNAD--------------TIGQMSCNPAIGGIAKG-----IVVREIDAL 87 (637) T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG--------------GTTCCCSCSEEECTTHH-----HHHHHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH--------------HEEEEECCCCCCCCCHH-----HHHHHHHHC T ss_conf 58889989778999999999968997799970632--------------55785156766773426-----799999865 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCC------CCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 2117899999996689510013676------4100012799999999999966988998134332040587589999867 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSK------PHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~k------ph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) ... +...-...+++.+++...+ +....|+ ..+-+.+.+.+++...--..+..|++|..+++.+.+|.+.+ T Consensus 88 gsl---~~~~aD~~~i~~~~LN~~kgpAV~~~raq~DR-~~fs~~vt~~l~~~pnI~i~~~eV~~i~~~~~~i~~v~~~~ 163 (637) T 2zxi_A 88 GGE---MGKAIDQTGIQFKMLNTRKGKAVQSPRAQADK-KRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNL 163 (637) T ss_dssp TCS---HHHHHHHHEEEEEEESTTSCGGGCEEEEEECH-HHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETT T ss_pred CCH---HHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCEEEEEEECCEECCCCEEEEEECCC T ss_conf 099---99999883455765235666523771899969-99999999999739998999701013034895899743588 Q ss_pred CCEEEECEEEEECCCC---------------------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 8489705689931887---------------------6799999996697111487456864303545540876365446 Q T0604 261 GEEIKSRHVVLAVGHS---------------------ARDTFEMLHERGVYMEAKPFSVGFRIEHKQSMIDEARFGPNAG 319 (549) Q Consensus 261 g~~i~ad~VVlAtGhs---------------------ard~~~~l~~~Gi~~~~k~~a~G~rie~~~~~id~~q~g~~~~ 319 (549) |..+.++.||++||-- +-.....+.+.|..+ ..|.+|.........||....-.... T Consensus 164 g~~~~~~~vv~~tGtfl~~~l~~~~~~~~~g~~~~~~~~~l~~~l~~~g~~~--~r~ktgtppr~~~~sid~~~~~~q~~ 241 (637) T 2zxi_A 164 GVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPL--IRFKTGTPARLDKRTIDFSALEVAPG 241 (637) T ss_dssp SCEEECSEEEECCTTCBTCEEEETTEEEECSBTTBCCBCTHHHHHHHTTCCC--EEEEEEECCEEEGGGCCCTTSEEECC T ss_pred CCEEHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHCCCHHHHHHHHHCCCCC--CCHHCCCCCCCCCCHHHHHHHHCCCC T ss_conf 8513454676641776643245431123454301000012789988607420--00110242112464120466521455 Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEE-ECCCCHHHCCCCCCCCEEEEEECCCC-CCCCCCCHH Q ss_conf 6667766524787658896326886167866887315786378-78831111266666734798503456-777763102 Q T0604 320 HPILGAADYKLVHHCKNGRTVYSFCMCPGGTVVAATSEEGRVV-TNGMSQYSRAERNANSAIVVGISPEV-DYPGDPLAG 397 (549) Q Consensus 320 ~~~l~~a~ykl~~~~~~g~~v~tfcmcpgG~vv~~~s~~g~~~-~nGmS~~~r~~~~an~al~v~i~~~~-~~~~~~l~g 397 (549) ........+ . .. .+..++.+.. ....+..++ +|- -.+..... ++..+. +++.-.-.| T Consensus 242 ~~~~~~~sf--~--~~---~~~~~~~~~~-----~~~~~c~~~~t~~-~~~~i~~~--------~~~~~~~~~G~ik~vG 300 (637) T 2zxi_A 242 DDPPPKFSF--W--TE---PVGSYWFPKG-----KEQVNCWITYTTP-KTHEIIRK--------NLHRTALYGGLIKGIG 300 (637) T ss_dssp CSSCBCSCS--S--SS---STTCSBCCTT-----CCCCCEEEEECCH-HHHHHHHH--------TC-------------- T ss_pred CCCCCCCCC--C--CC---CCCCCCCCCC-----HHHCCCCEEEECC-CCCEEHHH--------CCCCCCCCCCCEECCC T ss_conf 567653111--2--44---2221013455-----1113221124066-43033742--------5352110156300137 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 57769999999962787654134358888445542101344300057604526254031899999999988612220552 Q T0604 398 IRFQRELESNAYKLGGENYDAPAQKIGDFLKGRDPSQLGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIKGF 477 (549) Q Consensus 398 ~~~q~~lE~~a~~~gg~~~~~p~Q~~~dfl~~~~s~~~~~~~~s~~~~~~~~~L~~~lP~~v~~~l~~~l~~f~~~~~Gf 477 (549) ++||+++|++..++..+.++.. ||+.. . . -...+++.++++.||..+|..+. +.|||+ T Consensus 301 pr~cpsiedk~~~f~~k~~h~v------~LrpE--~----~---~~~~~ylvGfqTsL~~~eQ~rvf-------r~IPGL 358 (637) T 2zxi_A 301 PRYCPSIEDKIVKFPDKERHQI------FLEPE--G----L---DTIEIYPNGLSTSLPEEVQWEMY-------RSIPGL 358 (637) T ss_dssp -CCCCSHHHHHHHCTTCSCCEE------EEEEC--C----S---SCCEEEEETCCCCSCHHHHHHHH-------TTSTTC T ss_pred CCCCCCCCCCCEECCCCCCCCE------EECCC--C----C---CCCEEEECCCCCCCHHHHHHHHH-------HCCHHH T ss_conf 6556554311110266666413------44333--5----6---67789977866562278899998-------510444 Q ss_pred CCCCEEEE--EEEECEECCEEECCCCCCCCCCCCCCEEECC--C-CCH----HHHHHHHHHHHHHHHHHHHH Q ss_conf 46783798--1001102662420488743026898542012--3-533----57899999999999999999 Q T0604 478 ASEDGLLT--GVETRTSSPVCIKRGKDFQSVNLKGFYPAGE--G-AGY----AGGILSAGIDGIKVAEAVAR 540 (549) Q Consensus 478 ~~~ea~l~--GVEtr~ssPvri~r~~tleS~~i~GLY~~GE--g-aGy----agGI~saa~~G~~~a~~i~~ 540 (549) .+++-+.+ ++|+++++|-++ +.|||+|.++||||||+ | .|| |+|| ++|||||..+.. T Consensus 359 EnAef~R~Gy~hrn~fi~p~~L--~~tLe~K~~~~lffAGQI~GteGY~EAaa~Gl----~AGina~~~~~~ 424 (637) T 2zxi_A 359 ENVVLIRPAYAIEYDVVPPTEL--YPTLETKKIRGLFHAGNFNGTTGYEEAAGQGI----VAGINAALRAFG 424 (637) T ss_dssp TTCCEEECCEEEEEEECCGGGB--CTTSBBSSSBTEEECGGGGTBCSHHHHHHHHH----HHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHEECCHHHC--CHHHHHCCCCCEEEECEEECCHHHHHHHHHHH----HHHHHHHHHHCC T ss_conf 3434410244443000453321--44777415787478331203055356679999----998999999729 No 5 >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, cytoplasm, FAD, flavoprotein; HET: MSE FAD GTT; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Probab=99.97 E-value=2.8e-31 Score=212.89 Aligned_cols=350 Identities=15% Similarity=0.088 Sum_probs=177.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) ++|+|||||+||+.||+.+||.|++|+|+|-.+..- +.......+-...||+.+|..|.. -+.|-|...+..-. T Consensus 2 ~~ViVIGgGhAG~EAA~a~Ar~G~~t~L~tm~~~~~-----t~a~~~~~ig~msCNPsiGG~g~~-~AkG~LvrEidaLg 75 (443) T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM-----TPAHGTDRFAEIVCSNSLGGEGET-NAKGLLQAEMRRAG 75 (443) T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC-----CSSCCSSCTTCCCSCCEEEECSTT-CHHHHHHHHHHHHT T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCCCCCEEEEECCCCCCCCCCC-CHHHHHHHHHHHCC T ss_conf 817998897899999999997899789999514556-----767555660798666556898612-11568999999767 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEEC Q ss_conf 11789999999668951001367641000127999999999999669889981343320405875899998678489705 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR 267 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad 267 (549) ...-.+.+ .. .++... .+..|+ ..+-..|++.+++...--..+..|++| .++ T Consensus 76 G~m~~~aD---~s----kgPA~~--a~q~DR-~~y~~~m~~~l~~~~nl~i~~~eV~~i------------------~~~ 127 (443) T 3g5s_A 76 SLVMEAAD---LA----RVPAGG--ALAVDR-EEFSGYITERLTGHPLLEVVREEVREI------------------PPG 127 (443) T ss_dssp CHHHHHHH---HS----EECCTT--EEEECH-HHHHHHHHHHHHTCTTEEEECSCCCSC------------------CSS T ss_pred CHHHHHHH---HH----CCCCCC--CCHHHH-HHHHHHHHHHHHCCCCEEEEEEEECCC------------------CCC T ss_conf 99999999---86----699888--036419-999999999997189837763040145------------------655 Q ss_pred EEEEECCCCHHHH-HHHH-HHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEE Q ss_conf 6899318876799-9999-9669711148745686430354554087636544666677665247876588963268861 Q T0604 268 HVVLAVGHSARDT-FEML-HERGVYMEAKPFSVGFRIEHKQSMIDEARFGPNAGHPILGAADYKLVHHCKNGRTVYSFCM 345 (549) Q Consensus 268 ~VVlAtGhsard~-~~~l-~~~Gi~~~~k~~a~G~rie~~~~~id~~q~g~~~~~~~l~~a~ykl~~~~~~g~~v~tfcm 345 (549) .||+++|--.++. +.-+ ...|..+. .+..+.........+|....-.....+. ..+|.-..........+.||. T Consensus 128 ~~il~tG~~~~~~~~~~~~~~~G~~~~--~~~~~~~p~~~~~si~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 203 (443) T 3g5s_A 128 ITVLATGPLTSEALAEALKRRFGDHFL--AYYDAASPIVLYESIDLTKCFRAGRYGQ--SADYLNCPMTEEEYRRFHQAL 203 (443) T ss_dssp SEEECCCTTCCHHHHHHHHHHHCGGGE--EEEEEECCEEEGGGSCGGGCEECCCC-------CEEEEECHHHHHHHHHHH T ss_pred CEEEECCEECCCCEEEEEEEECCCCCC--CCCCCCCCHHHCCCCCCCCCEECCCCCC--CCCCCCCCCCCCCCCCCCCCC T ss_conf 328831210255435211010376432--3545564211102344222232267766--556642115655566640000 Q ss_pred CCCCEEEEEECCCCEEEECCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 67866887315786378788311112666667347985034567777631025776999999996278765413435888 Q T0604 346 CPGGTVVAATSEEGRVVTNGMSQYSRAERNANSAIVVGISPEVDYPGDPLAGIRFQRELESNAYKLGGENYDAPAQKIGD 425 (549) Q Consensus 346 cpgG~vv~~~s~~g~~~~nGmS~~~r~~~~an~al~v~i~~~~~~~~~~l~g~~~q~~lE~~a~~~gg~~~~~p~Q~~~d 425 (549) +...... +...+. ..+.+..+.+... ..........|.+||++||++- .+...++.. T Consensus 204 ~~~~~~~-----~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~GP~~~~siedk~--~~~~~~hqi------ 260 (443) T 3g5s_A 204 LEAQRHT-----PHDWEK---------LEFFEACVPVEEL-ARRGYQTLLFGPMKPVGLVDPR--TGKEPFAVV------ 260 (443) T ss_dssp HHCCBCC-----CC----------------CTTCCCHHHH-HHTCTTHHHHTTTCCTTCCBTT--TTBCCSEEE------ T ss_pred CCCCCCC-----CCEEEE---------CCCCCCCCCHHHH-HCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEE------ T ss_conf 3467657-----852584---------2444676431444-3048776566776786421587--787765124------ Q ss_pred HHCCCCCCCCCCCCCCCCCCEEECCHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE--EEEEECEECCEEECCCCCC Q ss_conf 84455421013443000576045262540318999999999886122205524678379--8100110266242048874 Q T0604 426 FLKGRDPSQLGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFASEDGLL--TGVETRTSSPVCIKRGKDF 503 (549) Q Consensus 426 fl~~~~s~~~~~~~~s~~~~~~~~~L~~~lP~~v~~~l~~~l~~f~~~~~Gf~~~ea~l--~GVEtr~ssPvri~r~~tl 503 (549) ||+- +..-...++++.+|++||+.+|..+. +.|||+.+++.+. |+|||++++|.|.+ +.|| T Consensus 261 fLep---------Eg~~~~~iY~nG~STsLP~~vQ~~~l-------rsIpGLEna~i~RpGYaiEYdyi~p~~~L-~~tL 323 (443) T 3g5s_A 261 QLRQ---------EDKAGRMWSLVGFQTGLKWPEQKRLI-------QMIPGLENAEIVRYGVMHRNTYLNAPRLL-GETL 323 (443) T ss_dssp EEEE---------CSTTSCEEEETTCCCCBCHHHHHHHH-------TTSTTCTTCCEEECCEEEEEEEECHHHHB-CTTS T ss_pred EECC---------CCCCCCEEEECCCCCCCCCCCHHHHH-------CCCCCCCCCEEEECCCEEEEEHHHHHHHH-HCCC T ss_conf 6224---------44568579717975666740267675-------03401055346304520022114667765-0435 Q ss_pred CCCCCCCCEEECC--C-CCH----HHHHHHHHHHHHHHHHHHH Q ss_conf 3026898542012--3-533----5789999999999999999 Q T0604 504 QSVNLKGFYPAGE--G-AGY----AGGILSAGIDGIKVAEAVA 539 (549) Q Consensus 504 eS~~i~GLY~~GE--g-aGy----agGI~saa~~G~~~a~~i~ 539 (549) |+|.++||||||+ | .|| |||+ ++|||||.++. T Consensus 324 etK~i~gLf~AGQINGTtGYEEAAaQGl----iAGiNAa~~~~ 362 (443) T 3g5s_A 324 EFREAEGLYAAGVLAGVEGYLESAATGF----LAGLNAARKAL 362 (443) T ss_dssp EETTEEEEEECGGGGTBCSHHHHHHHHH----HHHHHHHHHHT T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHH----HHHHHHHHHHC T ss_conf 3135563799412336500035678899----99999999976 No 6 >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Probab=99.96 E-value=1.4e-28 Score=196.07 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=116.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC--------------CCCCC Q ss_conf 7668987987999999999965990899835888321101000124354236023455413--------------55652 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGE--------------GGAGT 173 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~--------------ggag~ 173 (549) -.|||||+|+|||+||+.+++.|.+|+||||++..++......+.. +.. .+..+... ..... T Consensus 122 ~DVvVIG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~sgGg~-~~~---~t~~q~~~g~~Ds~e~~~~d~~~~~~~ 197 (566) T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGM-NAV---GTKQQTAHGVEDKVEWFIEDAMKGGRQ 197 (566) T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCE-ECS---SCHHHHHTTCCCCHHHHHHHHHHHTTT T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC-CCC---CCHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 9989989559999999999977994899978999995298848170-305---898788448999999999999983178 Q ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC---------CCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 124045532200021178999999966895100---------13676410001279999999999996698899813433 Q T0604 174 FSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEI---------LYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVD 244 (549) Q Consensus 174 fsdgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i---------~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~ 244 (549) ..|..+.....+ ...+.++|+.++|++.+- ....++|.+......+++.|++.+++.|++++++++++ T Consensus 198 ~~d~~lv~~~~~---~s~~~idwLe~~Gv~f~~~~~~~g~~~~r~~~~~~g~~~G~~l~~~L~~~a~~~Gv~i~~~t~v~ 274 (566) T 1qo8_A 198 QNDIKLVTILAE---QSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVV 274 (566) T ss_dssp CSCHHHHHHHHH---HHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEE T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCEECEEEEECCCCCCCHHHHHHHHHHHHHCCEEEECCCEEE T ss_conf 783999999998---58999999998099887665778830011566407787644679999999985065541021145 Q ss_pred CCEECCC-EEEEEEEC--CCC--EEEECEEEEECCCCHHHHHHHHHHCCC Q ss_conf 2040587-58999986--784--897056899318876799999996697 Q T0604 245 DLHMEDG-QITGVTLS--NGE--EIKSRHVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 245 ~i~~~~g-~v~gV~t~--~g~--~i~ad~VVlAtGhsard~~~~l~~~Gi 289 (549) +++.+++ .+.++... ++. .+.++.||||||.-+.+ ++|+...+. T Consensus 275 ~li~~~~g~v~gv~~~~~~g~~~~~~AkaVVLATGGf~~n-~em~~~~~~ 323 (566) T 1qo8_A 275 KLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN-KEMIAYYRP 323 (566) T ss_dssp EEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC-HHHHHHHCG T ss_pred EEEEECCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCH-HHHHHHHCC T ss_conf 5654112110000341134423662377236434543231-788875277 No 7 >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Probab=99.96 E-value=1.2e-28 Score=196.40 Aligned_cols=179 Identities=19% Similarity=0.187 Sum_probs=117.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHCCCCCCCCC Q ss_conf 7668987987999999999965990899835888321101000124354236023-----------45541355652124 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPES-----------NVQFGEGGAGTFSD 176 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~-----------n~~~g~ggag~fsd 176 (549) -.|||||+|+|||+||+.|+++|++|+||||++.+++++...++ +.+...+... .......+...+.| T Consensus 127 tDVvVVGgG~AGL~AAi~aae~G~~V~llEK~~~~Gg~s~~sgG-g~~~~~~~~~~~~g~~ds~e~~~~d~~~~~~~l~d 205 (572) T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAG-GMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572) T ss_dssp CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCS-CEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCC-CCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCC T ss_conf 57799895799999999999889958999789989968888567-81426898888538899999999999984488888 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC---------CCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCE Q ss_conf 04553220002117899999996689510013---------676410001279999999999996698899813433204 Q T0604 177 GKLYSQVKDPNFYGRKVITEFVEAGAPEEILY---------VSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLH 247 (549) Q Consensus 177 gkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~---------~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~ 247 (549) ..+.....+ ...+.++||.++|++..... ...++.++.....+++.|++.+.+.|++++++++|+++. T Consensus 206 ~~lv~~~~e---~s~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~L~~~~~~~gv~i~~~~~v~~l~ 282 (572) T 1d4d_A 206 PELVKVLAN---NSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRIL 282 (572) T ss_dssp HHHHHHHHH---THHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEE T ss_pred HHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEE T ss_conf 999999999---78999999998399865356657741231022268775159999999999997299799966677752 Q ss_pred ECCCEEEEEEECC---CC--EEEECEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 0587589999867---84--89705689931887679999999669711 Q T0604 248 MEDGQITGVTLSN---GE--EIKSRHVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 248 ~~~g~v~gV~t~~---g~--~i~ad~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) .+++++.+..... +. .+.++.||+|+|..+++ ++++...+... T Consensus 283 ~~~~~~~g~~~~~~~~~~~~~~~akaVilAtGg~~~~-~~~~~~~~~~~ 330 (572) T 1d4d_A 283 EDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKN-NERVSKYDPKL 330 (572) T ss_dssp EC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTC-HHHHHHHCGGG T ss_pred CCCCCCCEEEEEECCCCCEEEEECCCEEECCCCCCCC-HHHHHHHCCCC T ss_conf 0234310025775277733887236357654555432-89998518564 No 8 >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Probab=99.96 E-value=3.2e-28 Score=193.75 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=115.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC--------------CCC Q ss_conf 766898798799999999996599089983588832110100012435423602345541355--------------652 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGG--------------AGT 173 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gg--------------ag~ 173 (549) -.|||||+|+|||+||+.+++.|++|+||||++.+++......+..... ..+.+...+. ... T Consensus 127 ~DVlVVG~G~AGl~AAi~Aae~GakVillEK~~~~GG~s~~s~GG~~~~----~t~~q~~~g~~Ds~e~~~~d~~~~g~~ 202 (571) T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAA----WTDQQKAKKITDSPELMFEDTMKGGQN 202 (571) T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECS----SCHHHHHTTCCCCHHHHHHHHHHHTTT T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEE----CCHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 0499989879999999999988994899968999996599850481260----787887337999999999999986089 Q ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC---------CCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 12404553220002117899999996689510013---------676410001279999999999996698899813433 Q T0604 174 FSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILY---------VSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVD 244 (549) Q Consensus 174 fsdgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~---------~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~ 244 (549) ..|..+.....+ ...+.++|+.++|++..... ...++.++.....+++.|++.+++.|++++++++|+ T Consensus 203 ~~d~~lv~~~~~---~s~e~idwL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~a~~~GV~i~~~t~v~ 279 (571) T 1y0p_A 203 INDPALVKVLSS---HSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGI 279 (571) T ss_dssp CSCHHHHHHHHH---HHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEE T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEC T ss_conf 887999999998---68999999997299976477668633332222236654441688888888764141689854411 Q ss_pred CCEECCCEEEEEEE---CCCC--EEEECEEEEECCCCHHHHHHHHHHCC Q ss_conf 20405875899998---6784--89705689931887679999999669 Q T0604 245 DLHMEDGQITGVTL---SNGE--EIKSRHVVLAVGHSARDTFEMLHERG 288 (549) Q Consensus 245 ~i~~~~g~v~gV~t---~~g~--~i~ad~VVlAtGhsard~~~~l~~~G 288 (549) +|+.+++++.++.. .++. .+.++.||||||.-+++ ++|+.+.+ T Consensus 280 ~Li~d~~~~vg~v~~~~~~g~~~~i~AkaVILATGG~~~n-~e~~~~~~ 327 (571) T 1y0p_A 280 EVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKN-NERVAKLD 327 (571) T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTC-HHHHHHHC T ss_pred CCCEECCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCC-HHHHHHHC T ss_conf 2200022111000002577707998503342466742235-89887642 No 9 >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PSI, protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Probab=99.96 E-value=6.4e-26 Score=179.29 Aligned_cols=379 Identities=16% Similarity=0.224 Sum_probs=177.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) ...|||||+|+|||+||+.|++.|++|+||||++.++++.. +++.++|+.+|....+..+....+.+....+ . T Consensus 4 ~~DViVIG~G~AGl~AAi~aa~~G~~V~llEK~~~~g~~~~-~aggG~~n~~~~~~~~~~~~~~~~~~~~~~~------~ 76 (401) T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL-MSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL------A 76 (401) T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH-HGGGGTCCCEESSCCGGGEECSCTTSTHHHH------H T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-ECCCCCCCCCCCCCCHHHCCCCCHHHHHHHH------H T ss_conf 89589988559999999999878996899969988887247-8488633036787887770465677899998------6 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECC---CEEEEEEECCCCE Q ss_conf 2117899999996689510013676410001279999999999996698899813433204058---7589999867848 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED---GQITGVTLSNGEE 263 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~---g~v~gV~t~~g~~ 263 (549) .+....+.++................+ ............................+....... .....+.+ .+.. T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (401) T 2gqf_A 77 RYTNWDFISLVAEQGITYHEKELGQLF-CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV-NSTQ 154 (401) T ss_dssp HSCHHHHHHHHHHTTCCEEECSTTEEE-ETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE-TTEE T ss_pred CCCHHHHHHHHHHCCCEEECCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEEEE-CCEE T ss_conf 659889999986336123203676322-31001018999998877522210121122100011124420478840-5504 Q ss_pred EEECEEEEECCCC-------HHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECC Q ss_conf 9705689931887-------679999999669711-14874568643035455408763654466667766524787658 Q T0604 264 IKSRHVVLAVGHS-------ARDTFEMLHERGVYM-EAKPFSVGFRIEHKQSMIDEARFGPNAGHPILGAADYKLVHHCK 335 (549) Q Consensus 264 i~ad~VVlAtGhs-------ard~~~~l~~~Gi~~-~~k~~a~G~rie~~~~~id~~q~g~~~~~~~l~~a~ykl~~~~~ 335 (549) +.....+.+.+.. ............... .......+...+....... .+............ T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 223 (401) T 2gqf_A 155 WQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLT-----------ALSGISLPVTITAL 223 (401) T ss_dssp EEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGG-----------GGTTCEEEEEEEET T ss_pred EEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHC-----------CCCCCCCCEEEEEC T ss_conf 6530035303665556432346302234432765444544344322242212121-----------45664410377630 Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEECCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 89632688616786688731578637878831111266666734798503456777763102577699999999627876 Q T0604 336 NGRTVYSFCMCPGGTVVAATSEEGRVVTNGMSQYSRAERNANSAIVVGISPEVDYPGDPLAGIRFQRELESNAYKLGGEN 415 (549) Q Consensus 336 ~g~~v~tfcmcpgG~vv~~~s~~g~~~~nGmS~~~r~~~~an~al~v~i~~~~~~~~~~l~g~~~q~~lE~~a~~~gg~~ 415 (549) ....... ................................... ......+......... T Consensus 224 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~- 281 (401) T 2gqf_A 224 CGKSFYN-----------QLLFTHRGISGPAVLQISNYWQPTESVEIDLLPNH----------NVEEEINQAKQSSPKQ- 281 (401) T ss_dssp TSCEEEE-----------EEEECSSEEESHHHHHHTTTCCTTCCEEEESCSSS----------CHHHHHHHHHHHCTTS- T ss_pred CCCCCCC-----------CCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCHH----------HHHHHHHHHHHHHCCC- T ss_conf 2332135-----------43344446655432120133212332000025424----------5788888765431011- Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHCHHHHHHHHHHHHHHCCCC---CCCCCCCCEEEEEEEECEE Q ss_conf 5413435888844554210134430005760452625403189999999998861222---0552467837981001102 Q T0604 416 YDAPAQKIGDFLKGRDPSQLGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRK---IKGFASEDGLLTGVETRTS 492 (549) Q Consensus 416 ~~~p~Q~~~dfl~~~~s~~~~~~~~s~~~~~~~~~L~~~lP~~v~~~l~~~l~~f~~~---~~Gf~~~ea~l~GVEtr~s 492 (549) ............... ................+.........+.++.+... +++|..++.+++||+++++ T Consensus 282 ------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~t~GGv~~d~i 353 (401) T 2gqf_A 282 ------MLKTILVRLLPKKLV--ELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKVI 353 (401) T ss_dssp ------BHHHHHTTTSCHHHH--HHHHHTTSSCCCBGGGCCHHHHHHHHHHHHCEEECCSEECCTTTCSEEEEEECGGGB T ss_pred ------CCCCCCCCCCCCCCC--CHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCEEEECEE T ss_conf ------000121112321232--013332024332101135778999999974666885686886557998486857829 Q ss_pred CCEEECCCCCCCCCCCCCCEEECC---CCCHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 662420488743026898542012---3533578--999999999999999999 Q T0604 493 SPVCIKRGKDFQSVNLKGFYPAGE---GAGYAGG--ILSAGIDGIKVAEAVARD 541 (549) Q Consensus 493 sPvri~r~~tleS~~i~GLY~~GE---gaGyagG--I~saa~~G~~~a~~i~~~ 541 (549) +| +||||+.|||||+||| .+|+.|| +.+|+..|..||+.++++ T Consensus 354 ~~------~tle~~~i~GLYaaGEv~~i~G~tGGyn~~~A~~~G~~Ag~~~a~~ 401 (401) T 2gqf_A 354 SS------KTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISRQ 401 (401) T ss_dssp CT------TTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHTC T ss_pred CC------CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 81------1104168699899896123536788699999999999999998659 No 10 >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 1zoy_A* 1zp0_A* Probab=99.92 E-value=9.1e-24 Score=165.80 Aligned_cols=182 Identities=19% Similarity=0.216 Sum_probs=119.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCCCCCCC-C---CHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 766898798799999999996599089983588832110100-01243542-3---602345541355652124045532 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT-FGFWRKRT-L---NPESNVQFGEGGAGTFSDGKLYSQ 182 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~-~~~~~~~~-~---~~~~n~~~g~ggag~fsdgkl~t~ 182 (549) -.|+|||+|.|||+||+.+++.|.+|+|+||+...+...... +++..... . +++.....-.-+..-..|..+... T Consensus 19 ~DVlVIG~G~AGl~AA~~a~~~G~~V~lv~K~~~~~s~s~~A~GGina~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~ 98 (621) T 2h88_A 19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHY 98 (621) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHHH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 69899995599999999998779978999789999975799845674104799999999999999996378778999999 Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCC----------------------CEECCHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 200021178999999966895100136764----------------------1000127999999999999669889981 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKP----------------------HIGTFKLVTMIEKMRATIIELGGEIRFS 240 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kp----------------------h~gtd~~~~vv~~L~~~l~~~G~~i~~~ 240 (549) ..+. ..+.++|+.++|.|..-..+++. |.+......++..|.+++.+.+++++.+ T Consensus 99 l~~~---a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i~~~~~ 175 (621) T 2h88_A 99 MTEQ---APAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVE 175 (621) T ss_dssp HHHH---HHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEET T ss_pred HHHH---HHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9999---9999999997699712279987732356761102567875550256247559999999999998515424777 Q ss_pred CCCCCCEECCCEEEEEEE---CCCC--EEEECEEEEECCCCH-------------HHHHHHHHHCCCCCC Q ss_conf 343320405875899998---6784--897056899318876-------------799999996697111 Q T0604 241 TRVDDLHMEDGQITGVTL---SNGE--EIKSRHVVLAVGHSA-------------RDTFEMLHERGVYME 292 (549) Q Consensus 241 t~V~~i~~~~g~v~gV~t---~~g~--~i~ad~VVlAtGhsa-------------rd~~~~l~~~Gi~~~ 292 (549) +.+++++.+++++.|+.. .+|+ .|.|++||||||+.+ .|++.|..+.|..+. T Consensus 176 ~~~~~ll~~~g~~~Gav~~~~~~g~~~~~~AkaVIlATGG~g~l~~~tt~~~~~tGdG~~mA~raGa~l~ 245 (621) T 2h88_A 176 YFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQ 245 (621) T ss_dssp EEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEE T ss_pred EEEEEEEEECCCCEEEEEEECCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 8888999877953279999846993899970469976675446566778998867679999997697336 No 11 >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* Probab=99.92 E-value=2.2e-23 Score=163.45 Aligned_cols=182 Identities=23% Similarity=0.205 Sum_probs=115.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC-CCCCCC-CC---CHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 7668987987999999999965990899835888321101000-124354-23---602345541355652124045532 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTF-GFWRKR-TL---NPESNVQFGEGGAGTFSDGKLYSQ 182 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~-~~~~~~-~~---~~~~n~~~g~ggag~fsdgkl~t~ 182 (549) -.|||||+|.|||+||+.++++|.+|+|+|++...++...... ++.... .. +++.....-..+.....|..+... T Consensus 8 ~DVlVvG~G~AGl~AA~~A~~~G~~V~lveK~~~~~g~s~~a~GGi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~~ 87 (588) T 2wdq_A 8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEY 87 (588) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHHH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99999996499999999999779938999789989970788745466645899999999999999996378878999999 Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCC---------------------CEECCHHHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 200021178999999966895100136764---------------------10001279999999999996698899813 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKP---------------------HIGTFKLVTMIEKMRATIIELGGEIRFST 241 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kp---------------------h~gtd~~~~vv~~L~~~l~~~G~~i~~~t 241 (549) ..+ ...+.++|+.++|++......++. +.+......++..|.+++.+.|++++.++ T Consensus 88 l~~---~s~~~i~~Le~~Gv~f~r~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~~~~~~ 164 (588) T 2wdq_A 88 MCK---TGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (588) T ss_dssp HHH---HHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETE T ss_pred HHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 999---99999999997799863179987722225665304678766626770788499999999999985498899978 Q ss_pred CCCCCEE-CCCEEEEEEE---CCCC--EEEECEEEEECCCCH-------------HHHHHHHHHCCCCCC Q ss_conf 4332040-5875899998---6784--897056899318876-------------799999996697111 Q T0604 242 RVDDLHM-EDGQITGVTL---SNGE--EIKSRHVVLAVGHSA-------------RDTFEMLHERGVYME 292 (549) Q Consensus 242 ~V~~i~~-~~g~v~gV~t---~~g~--~i~ad~VVlAtGhsa-------------rd~~~~l~~~Gi~~~ 292 (549) .+++++. +|++++|+.. .+|+ .|.|++||||||+-+ .|++.|..+.|..+. T Consensus 165 ~~~~ll~~~dg~v~g~~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~ 234 (588) T 2wdq_A 165 YALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQ 234 (588) T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEE T ss_pred EEEEEEECCCCCEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 9999998058846745899878997899955819989999841676635899873199999997797164 No 12 >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* Probab=99.90 E-value=1.5e-20 Score=145.68 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=115.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHCCCCCCCCCHHHHH Q ss_conf 7668987987999999999965--99089983588832110100012435423602345----54135565212404553 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNV----QFGEGGAGTFSDGKLYS 181 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~--G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~----~~g~ggag~fsdgkl~t 181 (549) -.|+|||+|.|||+||+.+++. |.+|+|+||+...++......+..... .+....+ ..-..+.....|..+.. T Consensus 6 tDVlVIG~G~AGl~AA~~a~~~~~g~~V~lveK~~~~~s~s~~a~GGi~a~-~~~~Ds~e~~~~D~~~~g~~l~d~~lv~ 84 (602) T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAV-AQDHDSFEYHFHDTVAGGDWLCEQDVVD 84 (602) T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECC-CSTTCCHHHHHHHHHHHTTTCSCHHHHH T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHCCCCCCHHHHH T ss_conf 598999963999999999998689897999978999997289986555033-7999999999999999628988399999 Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCC----C----------CEECCHHHHHHHHHHHHHHHC-CCEEEEECCCCCC Q ss_conf 220002117899999996689510013676----4----------100012799999999999966-9889981343320 Q T0604 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSK----P----------HIGTFKLVTMIEKMRATIIEL-GGEIRFSTRVDDL 246 (549) Q Consensus 182 ~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~k----p----------h~gtd~~~~vv~~L~~~l~~~-G~~i~~~t~V~~i 246 (549) ...+ ...+.++|+.++|.+......++ + |.+......++..+.+++.+. ++.+...+.+++| T Consensus 85 ~l~~---~s~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L 161 (602) T 1kf6_A 85 YFVH---HCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDI 161 (602) T ss_dssp HHHH---HHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEE T ss_pred HHHH---HHHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEE T ss_conf 9999---9999999999769974048999884103688614725766887622899999998774586014500688998 Q ss_pred EECCCEEEEEEE---CCCC--EEEECEEEEECCCCH-------------HHHHHHHHHCCCCCC Q ss_conf 405875899998---6784--897056899318876-------------799999996697111 Q T0604 247 HMEDGQITGVTL---SNGE--EIKSRHVVLAVGHSA-------------RDTFEMLHERGVYME 292 (549) Q Consensus 247 ~~~~g~v~gV~t---~~g~--~i~ad~VVlAtGhsa-------------rd~~~~l~~~Gi~~~ 292 (549) ..++|++.|++. .+|+ .+.|++||||||+-+ .|++.|..+.|..+. T Consensus 162 ~~~dg~v~Gav~~~~~~g~~~~~~AkaVIlATGG~g~~~~~~t~~~~~tGdG~~mA~~aGA~l~ 225 (602) T 1kf6_A 162 LVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLR 225 (602) T ss_dssp EEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEE T ss_pred EECCCCEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEE T ss_conf 7079968999999758995899966827989998755664445899978699999997797861 No 13 >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Probab=99.89 E-value=2.9e-20 Score=143.81 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=109.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--------HHHHHHHHCCCCCCCCCHHH Q ss_conf 7668987987999999999965990899835888321101000124354236--------02345541355652124045 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLN--------PESNVQFGEGGAGTFSDGKL 179 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~--------~~~n~~~g~ggag~fsdgkl 179 (549) -.|||||+|.|||+||+.++++|.+|+|+|+++..++.+....+.......+ ++.....-..+.....|..+ T Consensus 6 ~DVlVIGsG~AGl~AAi~A~e~G~~V~lveK~~~~~g~S~~A~GGi~a~~~~~~~~~~Ds~e~h~~Dt~~~g~~l~D~~l 85 (660) T 2bs2_A 6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQKV 85 (660) T ss_dssp CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSCHHH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH T ss_conf 44899997799999999999779968999688999982777627312775646679998999999999996179876999 Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC-------------------------CC----------CEECCHHHHHHH Q ss_conf 5322000211789999999668951001367-------------------------64----------100012799999 Q T0604 180 YSQVKDPNFYGRKVITEFVEAGAPEEILYVS-------------------------KP----------HIGTFKLVTMIE 224 (549) Q Consensus 180 ~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~-------------------------kp----------h~gtd~~~~vv~ 224 (549) .....+ ...+.++|+.++|+|......+ ++ |.+......+.. T Consensus 86 v~~l~~---~a~~~i~~L~~~Gv~F~r~~~G~~~~~~~~~~~~~~~~~~~~g~~~~r~~gG~~~~r~~~~~d~tG~~i~~ 162 (660) T 2bs2_A 86 ARMFVN---TAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLF 162 (660) T ss_dssp HHHHHH---HHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHH T ss_pred HHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCHHHHH T ss_conf 999999---99999999997599862067876222122233542212356661330136895533566323124625677 Q ss_pred HHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE---CCCC--EEEECEEEEECCCCH Q ss_conf 9999999669889981343320405875899998---6784--897056899318876 Q T0604 225 KMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL---SNGE--EIKSRHVVLAVGHSA 277 (549) Q Consensus 225 ~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t---~~g~--~i~ad~VVlAtGhsa 277 (549) .|.+.+...+++++.++.++++..+++++.|++. .+|+ .+.+++||+|||..+ T Consensus 163 ~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~Gav~~~~~~G~~~~~~akavilAtGG~g 220 (660) T 2bs2_A 163 AVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660) T ss_dssp HHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG T ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCEEECCCCCC T ss_conf 6898642244202432343012246666500034315898189995285796345675 No 14 >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Probab=99.88 E-value=1.8e-19 Score=138.90 Aligned_cols=170 Identities=16% Similarity=0.070 Sum_probs=95.5 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHH----CCCEEEEEECCCCCCCCCCCCCCCCCCCCC------C----HHHHHHHHC Q ss_conf 87767766898798799999999996----599089983588832110100012435423------6----023455413 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQ----MGFNPIIVERGKEVRERTKDTFGFWRKRTL------N----PESNVQFGE 168 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~----~G~~V~VlErg~~vg~r~~~~~~~~~~~~~------~----~~~n~~~g~ 168 (549) .+-....|||||+|.|||+||+.+++ .|.+|+|+||+...++.....+.......+ + ++.....-. T Consensus 18 ~e~ietDVlVIGsG~AGL~AAi~Aa~~a~~~G~~V~lveK~~~~~s~s~a~G~~~~~~~~~~~~~~~~~Ds~e~~~~d~~ 97 (643) T 1jnr_A 18 TEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVT 97 (643) T ss_dssp EEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHH T ss_pred CEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH T ss_conf 55887198998978899999999998537564979999788899751899889999751244467788899999999999 Q ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC---------CEECCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 55652124045532200021178999999966895100136764---------100012799999999999966988998 Q T0604 169 GGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKP---------HIGTFKLVTMIEKMRATIIELGGEIRF 239 (549) Q Consensus 169 ggag~fsdgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kp---------h~gtd~~~~vv~~L~~~l~~~G~~i~~ 239 (549) .....+.|..+.....+ ...+.++|+.++|++......++. +.+......+...+ .....+++++. T Consensus 98 ~~g~g~~d~~lv~~l~~---~s~~~v~~L~~~Gv~f~r~~~G~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~i~~ 172 (643) T 1jnr_A 98 LDMMGLAREDLVADYAR---HVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAA--KMAVGEENIYE 172 (643) T ss_dssp HHTTTCCCHHHHHHHHH---HHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHH--HHHHCGGGEEC T ss_pred HHCCCCCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCCCEEEECCCEECCCCCCHHHHHHHHH--HHHHCCCCEEE T ss_conf 86089872999999999---89999999997799851489998853358521688985899999999--87634641244 Q ss_pred ECCCCCCEECCC---EEEEEEE---CCCC--EEEECEEEEECCCCH Q ss_conf 134332040587---5899998---6784--897056899318876 Q T0604 240 STRVDDLHMEDG---QITGVTL---SNGE--EIKSRHVVLAVGHSA 277 (549) Q Consensus 240 ~t~V~~i~~~~g---~v~gV~t---~~g~--~i~ad~VVlAtGhsa 277 (549) ++.+++++.+++ ++.|+.. .+|+ .|.|++||||||+.+ T Consensus 173 ~~~~~~ll~~~~~~~~v~Ga~~~d~~~G~~~~i~AkaVILATGG~~ 218 (643) T 1jnr_A 173 RVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643) T ss_dssp SEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC T ss_pred EEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECEEEECCCCCC T ss_conf 7898889997587887999999975779479999476998678754 No 15 >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Probab=99.86 E-value=2.8e-20 Score=143.94 Aligned_cols=176 Identities=20% Similarity=0.170 Sum_probs=109.1 Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-H---HCCCCCCCCCHHHHHHHHH Q ss_conf 68987987999999999965990899835888321101000124354236023455-4---1355652124045532200 Q T0604 110 PIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQ-F---GEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 110 VVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~-~---g~ggag~fsdgkl~t~~~~ 185 (549) |+|||+|+|||+||+.+++.|.+|+|+||+.. ++......+.... ..+....+. + -.-......|..+.....+ T Consensus 2 VlViG~G~AGl~AA~~a~e~G~~V~l~eK~~~-ggss~~a~Ggi~a-~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~~~~~ 79 (472) T 2e5v_A 2 IYIIGSGIAGLSAGVALRRAGKKVTLISKRID-GGSTPIAKGGVAA-SVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472) T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSTT-CSSGGGCCSCEEC-CCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHCHHHEE-CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 89996839999999999987991899968999-9864686625516-269999999999999997179888999999999 Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCC---C----C-CCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEE Q ss_conf 021178999999966895100136---7----6-4100012799999999999966988998134332040587589999 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYV---S----K-PHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVT 257 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~---~----k-ph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~ 257 (549) . ..+.++|+.++|.+...... + + .|.+......+++.|.+.+.+.+++++..+.+..+.. ++++.++. T Consensus 80 ~---s~~~i~~L~~~Gv~f~~~~~~~gG~~~~R~~~~~~~~g~~i~~~l~~~~~~~gv~~~~~~~~~~l~~-~~~v~~~~ 155 (472) T 2e5v_A 80 E---AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLVEIRVK-DGKVTGFV 155 (472) T ss_dssp H---HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEEEEEEE-TTEEEEEE T ss_pred H---HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCCEEEEE T ss_conf 9---9999999998099742046777986356325757983178999999998750676330023334422-68436888 Q ss_pred ECC-CCEEEECEEEEECCCCHH-------------HHHHHHHHCCCCC Q ss_conf 867-848970568993188767-------------9999999669711 Q T0604 258 LSN-GEEIKSRHVVLAVGHSAR-------------DTFEMLHERGVYM 291 (549) Q Consensus 258 t~~-g~~i~ad~VVlAtGhsar-------------d~~~~l~~~Gi~~ 291 (549) ... +..+.+++||||||+-++ |++.|..+.|..+ T Consensus 156 ~~~~~~~~~akaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l 203 (472) T 2e5v_A 156 TEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTIL 203 (472) T ss_dssp ETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCE T ss_pred ECCCCEEEECCEEEEECCCHHCCCHHCCCCCCCCHHHHHHHHHCCCCC T ss_conf 425417997355999358611070111589997359999999859833 No 16 >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Probab=99.85 E-value=5.1e-21 Score=148.59 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=109.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH-HHH---CCCCCCCCCHHHHHH Q ss_conf 7766898798799999999996599089983588832110100012435423602345-541---355652124045532 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNV-QFG---EGGAGTFSDGKLYSQ 182 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~-~~g---~ggag~fsdgkl~t~ 182 (549) .-.|+|||+|+|||+||+.+++.| +|+|+||++..++.+....+.... ..+....+ .+. .-+.....|..+... T Consensus 8 ~~DVlVIG~G~AGl~AA~~a~~~g-~VvlleK~~~~gG~s~~A~gGi~a-~~~~~Ds~e~~~~Dt~~~g~gl~d~~lv~~ 85 (540) T 1chu_A 8 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAA-VFDETDSIDSHVEDTLIAGAGICDRHAVEF 85 (540) T ss_dssp ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--------------CCSHHHHHHHHHHHHHHTTTCCCHHHHHH T ss_pred CCCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHCCCEE-ECCCCCCHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 389899996099999999975369-889998889999707787044017-279999999999999996589878999999 Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCC-------------CCC-----CEECCHHHHHHHHHHH-HHHHCCCEEEEECCC Q ss_conf 200021178999999966895100136-------------764-----1000127999999999-999669889981343 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYV-------------SKP-----HIGTFKLVTMIEKMRA-TIIELGGEIRFSTRV 243 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~-------------~kp-----h~gtd~~~~vv~~L~~-~l~~~G~~i~~~t~V 243 (549) ..+. ..+.++|+.++|++...... ++. +........++..+.+ .++..++++..++.+ T Consensus 86 l~~~---s~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~~~gghs~~R~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (540) T 1chu_A 86 VASN---ARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNA 162 (540) T ss_dssp HHHH---HHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEE T ss_pred HHHH---HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 9999---9999999997699776234777764311223589677703751687763289999999997599389963146 Q ss_pred CCCEECC-------CEEEEEEEC---CCC--EEEECEEEEECCCC-------------HHHHHHHHHHCCCCCC Q ss_conf 3204058-------758999986---784--89705689931887-------------6799999996697111 Q T0604 244 DDLHMED-------GQITGVTLS---NGE--EIKSRHVVLAVGHS-------------ARDTFEMLHERGVYME 292 (549) Q Consensus 244 ~~i~~~~-------g~v~gV~t~---~g~--~i~ad~VVlAtGhs-------------ard~~~~l~~~Gi~~~ 292 (549) ++++.++ +++.|+..- +++ .+.|++||+|||.. ..|++.|..+.|..+. T Consensus 163 ~~li~~d~~~~~~~~~v~Ga~~~~~~~g~~~~i~AkavilAtGG~~~~~~~t~~~~~~tGdG~~mA~~aGA~l~ 236 (540) T 1chu_A 163 VDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVA 236 (540) T ss_dssp EEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEE T ss_pred EEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 89998536666676469999999758980999974278870455555312367999974299999998498714 No 17 >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Probab=99.85 E-value=9.6e-24 Score=165.67 Aligned_cols=127 Identities=9% Similarity=0.046 Sum_probs=92.9 Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 82689899999999985888789177079986202334797269999999865605888874025655422667665667 Q T0604 20 PLDHEEGALLDAITKKLGIPAEKVISFNVFRRGYDARKKTNIHLIYTLDIIVEGDETALLAKFANDPHVRQTPDMEYKFV 99 (549) Q Consensus 20 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~i~rks~DaR~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (549) .++..++.|.+..+|.++++|..|+|+.|++|..+.|..+...|+.|..|+...........|..||.+..+.+..+... T Consensus 302 ~~~~ae~~l~~g~~D~v~~gR~~iadP~~~~k~~~g~~~~ir~C~~Cn~~~~~~~~~~~~~~C~~Np~~g~e~~~~~~~~ 381 (729) T 1o94_A 302 DPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPE 381 (729) T ss_dssp CHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTTCGGGCCCCCCCCHHHHHHHHSSSCCCCSSCTTTTTHHHHCCCTT T ss_pred CHHHHHHHHHCCCCCEEECCHHHHCCCCHHHHHHCCCCCCCCCCHHHHCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 99999999987998746305698719306667445994336556323251112643698715624765563320146863 Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC Q ss_conf 77887767766898798799999999996599089983588832110 Q T0604 100 AKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT 146 (549) Q Consensus 100 ~~~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~ 146 (549) ...+...+++|+|||||||||.||+.|+++|++|+|+|+.+.+|+.. T Consensus 382 ~~~~~~~~kkV~VIGaGPAGL~AA~~lA~~G~~VtL~Ek~~~lGG~l 428 (729) T 1o94_A 382 KFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428 (729) T ss_dssp CCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTH T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC T ss_conf 11115668669998316789999999975799489996305421001 No 18 >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Probab=99.84 E-value=3.2e-18 Score=131.06 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=49.7 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 79999999999996698899813433204058758999986784897056899318 Q T0604 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) ...+++.|.+.+++.|++|+++++|++|..+++++++|.+ +|+++.+|.||.+.+ T Consensus 195 ~~~i~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad~VI~~~~ 249 (425) T 3ka7_A 195 CKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLG 249 (425) T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSC T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCC-CCEEECCCCCCCCCC T ss_conf 5532100000013344101217742475410322223321-110110332346788 No 19 >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Probab=99.82 E-value=2.8e-22 Score=156.47 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=117.4 Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 82689899999999985888789177079986202334797269999999865605888874025655422667665667 Q T0604 20 PLDHEEGALLDAITKKLGIPAEKVISFNVFRRGYDARKKTNIHLIYTLDIIVEGDETALLAKFANDPHVRQTPDMEYKFV 99 (549) Q Consensus 20 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~i~rks~DaR~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (549) .++..|+.|.+..+|.+++.|..|+|+.|++|..+.|-.+..+|+.|..|+.. .........|.+++....+.+.+ T Consensus 291 ~~~~ae~~l~~g~~D~v~~gR~~iadP~~~~k~~~g~~~~i~~C~~c~~~~~~----~~~~~~~~~C~~np~~g~E~~~~ 366 (671) T 1ps9_A 291 DPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLD----QIFVGKVTSCLVNPRACHETKMP 366 (671) T ss_dssp SHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTTCGGGCCCCCCCCTTTHH----HHHTTCCCCCSSCTTTTCTTTSC T ss_pred CHHHHHHHHHCCCCCEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHH----HHHCCCCCEECCCCCCCCCEECC T ss_conf 79999999987998764113598709438999974996667736306788741----22159838508985358712504 Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHH Q ss_conf 77887767766898798799999999996599089983588832110100012435423602345541355652124045 Q T0604 100 AKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKL 179 (549) Q Consensus 100 ~~~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl 179 (549) . .+...++||+|||||||||.||+.|+++|++|+|+|+.+.+|+....... T Consensus 367 ~-~~a~~~kkVvVIGaGPAGL~AA~~aa~~G~~Vtl~E~~~~lGG~~~~~~~---------------------------- 417 (671) T 1ps9_A 367 I-LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ---------------------------- 417 (671) T ss_dssp C-CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT---------------------------- T ss_pred C-CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECCC---------------------------- T ss_conf 3-33344645999897477899999998721764799421543305732135---------------------------- Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC Q ss_conf 53220002117899999996689510013676410001279999999999996698899813433204058758999986 Q T0604 180 YSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS 259 (549) Q Consensus 180 ~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~ 259 (549) .| .......+++.+...+.+.++++++++.++.-. T Consensus 418 ----------------------~p-----------~~~~~~~~~~~~~~~~~~~gv~v~~~~~v~~~~------------ 452 (671) T 1ps9_A 418 ----------------------IP-----------GKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQ------------ 452 (671) T ss_dssp ----------------------ST-----------TCTTHHHHHHHHHHHHHHHTCEEEESCCCCSSS------------ T ss_pred ----------------------CC-----------CCHHHHHHHHHHHHHHHHHHCEEEEECCCCHHH------------ T ss_conf ----------------------76-----------412456678999987552201042101233111------------ Q ss_pred CCCEEEECEEEEECCC Q ss_conf 7848970568993188 Q T0604 260 NGEEIKSRHVVLAVGH 275 (549) Q Consensus 260 ~g~~i~ad~VVlAtGh 275 (549) ....|.||+|||. T Consensus 453 ---~~~~D~VIiATG~ 465 (671) T 1ps9_A 453 ---LQAFDETILASGI 465 (671) T ss_dssp ---SCCSSEEEECCCE T ss_pred ---CCCCCCEEEECCC T ss_conf ---0046844983277 No 20 >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Probab=99.79 E-value=6.2e-17 Score=122.97 Aligned_cols=168 Identities=14% Similarity=0.036 Sum_probs=91.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC------CEEEEEECCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHCCCCCCCCCH Q ss_conf 776689879879999999999659------9089983588832110100012435---4236023455413556521240 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG------FNPIIVERGKEVRERTKDTFGFWRK---RTLNPESNVQFGEGGAGTFSDG 177 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G------~~V~VlErg~~vg~r~~~~~~~~~~---~~~~~~~n~~~g~ggag~fsdg 177 (549) .-.|||||+|.|||+||+.++++| .+|+|+||++..+......+..+.. +.-+++..............|. T Consensus 22 ~~DVlVVGsG~AGl~AAi~a~~~G~~~~~~a~V~lleK~~~~~sg~~~~G~~~~~~~~~~ds~e~~~~d~~~~~~gl~d~ 101 (662) T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMGLVRE 101 (662) T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHHHTTTCCCH T ss_pred ECCEEEECCCHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHH T ss_conf 54689989888999999999984321257986999978899975389998888700789999999999999971898769 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC--------------------CC-----CEECCHHHHHHHHHHHHHHH Q ss_conf 455322000211789999999668951001367--------------------64-----10001279999999999996 Q T0604 178 KLYSQVKDPNFYGRKVITEFVEAGAPEEILYVS--------------------KP-----HIGTFKLVTMIEKMRATIIE 232 (549) Q Consensus 178 kl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~--------------------kp-----h~gtd~~~~vv~~L~~~l~~ 232 (549) .+.....+ ...+.++|+.++|++....... ++ +........+...+.+.+.+ T Consensus 102 ~lv~~~~~---~a~~~v~~Le~~Gv~f~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~~G~~i~~~~~~~~~~ 178 (662) T 3gyx_A 102 DLIYDLGR---HVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKN 178 (662) T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHHHHHHHH T ss_pred HHHHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 99999999---899999999985998633488973023123556673215687515557774366289999999999972 Q ss_pred --CCCEEEEECCCCCCEE---CCCEEEEEEE---CCCC--EEEECEEEEECCCCH Q ss_conf --6988998134332040---5875899998---6784--897056899318876 Q T0604 233 --LGGEIRFSTRVDDLHM---EDGQITGVTL---SNGE--EIKSRHVVLAVGHSA 277 (549) Q Consensus 233 --~G~~i~~~t~V~~i~~---~~g~v~gV~t---~~g~--~i~ad~VVlAtGhsa 277 (549) .++.+...+.+++++. ++++++|+.. .+|+ .+.++.||||||+.+ T Consensus 179 ~~~~~~i~~~~~~~~ll~~~~~~g~v~G~~~~~~~~g~~~~~~akaVILATGG~~ 233 (662) T 3gyx_A 179 ALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV 233 (662) T ss_dssp HHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC T ss_pred CCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCEEEECCCCCC T ss_conf 4686089985444678884057870567898845888189995174999227522 No 21 >2cul_A Glucose-inhibited division protein A-related protein, probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus HB8} SCOP: c.3.1.7 Probab=99.77 E-value=1.7e-18 Score=132.81 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=104.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) -.||||||||||+.||+.+||.|.+|+||+..-+. .-...||+..+..+.+. +...+ + T Consensus 4 yDVIVVGaGhAG~eAA~aaAr~G~ktlLit~~ld~--------------ig~m~cnpa~Gg~~kg~-----lvrei-D-- 61 (232) T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA--------------VMMPFLPPKPPFPPGSL-----LERAY-D-- 61 (232) T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG--------------TTCCSSCCCSCCCTTCH-----HHHHC-C-- T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------HCCCCCCCCCCCCCCCE-----EEEEE-C-- T ss_conf 89899996889999999999889908999556678--------------42567787556477733-----79997-1-- Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEEC Q ss_conf 11789999999668951001367641000127999999999999669889981343320405875899998678489705 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR 267 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad 267 (549) ..| |. ....-..+++.+++..+--.++..|++|+.++++|+||+|.+|.++.|+ T Consensus 62 -----------skG----------pa-----V~a~RaQ~k~~Le~~~nL~i~q~~V~dli~e~~~V~GV~t~~G~~~~Ak 115 (232) T 2cul_A 62 -----------PKD----------ER-----VWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGE 115 (232) T ss_dssp -----------TTC----------CC-----HHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECS T ss_pred -----------CCC----------HH-----HHHHHHHHHHHHHHCCCCHHHHCCCCCEEECCCCEEEEEECCCEEEEEE T ss_conf -----------563----------66-----6619999999976236835221551224751650369995233099986 Q ss_pred EEEEECCC---------------------CHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCHHHHHHHHCCCCCC Q ss_conf 68993188---------------------76799999996697111487456864--303545540876365446 Q T0604 268 HVVLAVGH---------------------SARDTFEMLHERGVYMEAKPFSVGFR--IEHKQSMIDEARFGPNAG 319 (549) Q Consensus 268 ~VVlAtGh---------------------sard~~~~l~~~Gi~~~~k~~a~G~r--ie~~~~~id~~q~g~~~~ 319 (549) +||||||. ++-...+.|+++|+.+. ++.+|.+ +..+...||...+..+.+ T Consensus 116 aVILTTGTFL~G~ihiG~~~~~~GR~ge~~s~~Ls~~L~~lg~~~~--RlKTGTPa~PRl~~~sid~~~~~~q~g 188 (232) T 2cul_A 116 KVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV--EREGEVPETPSTPGYRVRYLAFHPEEW 188 (232) T ss_dssp EEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE--EEEEEEC-----CCEEEEEEEECGGGE T ss_pred EEEEECCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC--EECCCCCCCCCCCCCEECCCCCCCCCC T ss_conf 9998046555433886334503666777317899999997699844--025999999887687615445665668 No 22 >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Probab=99.76 E-value=1.1e-16 Score=121.41 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=38.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 766898798799999999996599089983588832110100 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) ..|||||||+|||.||+.|+++|++|+|||+.+.+|+|.... T Consensus 5 ~DVvIIGaGisGL~aA~~L~~~G~~V~VlEa~~rvGGR~~t~ 46 (520) T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL 46 (520) T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 888998978899999999987899889992699872655578 No 23 >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* Probab=99.73 E-value=8.8e-16 Score=115.71 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=39.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCC Q ss_conf 7766898798799999999996599-089983588832110100 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKDT 149 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~vg~r~~~~ 149 (549) .++|+|||||+|||.||+.|+++|+ +|+|||+.+.+|+|.... T Consensus 4 ~p~V~IIGaG~aGL~aA~~L~~~G~~~V~vlEa~~rvGGr~~t~ 47 (472) T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT 47 (472) T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEE T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEE T ss_conf 99889989688999999999967999889993899873776689 No 24 >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Probab=99.72 E-value=6.8e-15 Score=110.14 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=94.1 Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHH------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC- Q ss_conf 77887767766898798799999999996------59908998358883211010001243542360234554135565- Q T0604 100 AKAPENLTERPIVIGFGPCGLFAGLVLAQ------MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAG- 172 (549) Q Consensus 100 ~~~~~~~~~rVVVVGaGpAGL~AAl~La~------~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag- 172 (549) ..-.+++.-.|||||||||||.||+.|++ .|++|+||||++.++.+......+.. ..++. ..+.+.+.++. T Consensus 28 ~~~r~~~e~DVvIVGaGPAGLaaA~~Laq~~~~~~~Gl~V~VlEK~~~~ga~i~sG~~l~p-~aL~e-L~pd~~~~~apl 105 (584) T 2gmh_A 28 NMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDP-RAFEE-LFPDWKEKGAPL 105 (584) T ss_dssp CCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECT-HHHHH-HCTTHHHHTCCC T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEECH-HHHHH-HHCCHHHCCCCC T ss_conf 7655668599899894889999999998426023699969999578889866624327788-99998-713222238830 Q ss_pred --CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC-CEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEC Q ss_conf --2124045532200021178999999966895100136764-1000127999999999999669889981343320405 Q T0604 173 --TFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKP-HIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME 249 (549) Q Consensus 173 --~fsdgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kp-h~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~ 249 (549) .....++........ ...+......... .........+.+.|.++++++|+++..+..+.++..+ T Consensus 106 ~~~V~~d~i~~l~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~L~~~a~~~G~~i~~g~~v~~~l~~ 173 (584) T 2gmh_A 106 NTPVTEDRFGILTEKYR------------IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFH 173 (584) T ss_dssp CEECCEEEEEEECSSCE------------EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEEC T ss_pred CCCEEEEEEEEECCCEE------------EECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEECC T ss_conf 26388738999779814------------840345434557875189875786289999998669889715156665404 Q ss_pred CCE-EEEEEEC---------------CCCEEEECEEEEECCCCHHH Q ss_conf 875-8999986---------------78489705689931887679 Q T0604 250 DGQ-ITGVTLS---------------NGEEIKSRHVVLAVGHSARD 279 (549) Q Consensus 250 ~g~-v~gV~t~---------------~g~~i~ad~VVlAtGhsard 279 (549) ++. +.++.+. .+.++.++.||.|.|..+.- T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vV~AdG~~s~l 219 (584) T 2gmh_A 174 EDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHL 219 (584) T ss_dssp TTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHH T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHH T ss_conf 7725888872134555444101455775488767899426764211 No 25 >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* Probab=99.70 E-value=1.1e-15 Score=115.21 Aligned_cols=176 Identities=21% Similarity=0.157 Sum_probs=104.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----------HCCCC-CC Q ss_conf 76689879879999999999659--908998358883211010001243542360234554-----------13556-52 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQF-----------GEGGA-GT 173 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~-----------g~gga-g~ 173 (549) -.|||||||.+||++|+.|+++| .+|+||||+....+.+....++.+............ .+.+. .. T Consensus 22 yDvvIIGaGi~Gls~A~~La~~g~~~~V~liE~~~~~~GaS~~~~g~i~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~~ 101 (405) T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDLEYDFL 101 (405) T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTCSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHTTCCCC T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 88999892799999999999679878699987999886512554522265889868899999999999999988576611 Q ss_pred C-CCHHHHHHH-HHHCCCHHHHHHHHHHCCCCCCCCC------------------------CCCCCEECCHHHHHHHHHH Q ss_conf 1-240455322-0002117899999996689510013------------------------6764100012799999999 Q T0604 174 F-SDGKLYSQV-KDPNFYGRKVITEFVEAGAPEEILY------------------------VSKPHIGTFKLVTMIEKMR 227 (549) Q Consensus 174 f-sdgkl~t~~-~~~~~~~~~vl~~~~~~Ga~~~i~~------------------------~~kph~gtd~~~~vv~~L~ 227 (549) + ..+...... .................+.+.+.+. .-.+.-|......++..|. T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~idp~~~~~~l~ 181 (405) T 2gag_B 102 FSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFA 181 (405) T ss_dssp CBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHHHHHHHH T ss_pred EEECCEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCEEECHHHHHHHHH T ss_conf 43124043201013467899877778753875055479898764774433422244423426769986997999999999 Q ss_pred HHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHHHHH Q ss_conf 999966988998134332040587589999867848970568993188767999999 Q T0604 228 ATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEML 284 (549) Q Consensus 228 ~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~~~l 284 (549) +.+++.|++|+++++|++|+.+++++.+|.|.+|+ +.++.||+|+|..+++...++ T Consensus 182 ~~~~~~Gv~v~~~~~V~~i~~~~~~v~~v~t~~g~-~~~~~vV~a~g~~~~~l~~~~ 237 (405) T 2gag_B 182 RKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGT-IHAGKVALAGAGHSSVLAEMA 237 (405) T ss_dssp HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTCC-EEEEEEEECCGGGHHHHHHHH T ss_pred HHHHHCCCEEEECCEEEEEEEECCEEEEEEECCCC-EEEEEEEECCCCCHHHHHHHC T ss_conf 99997799999477389999989989999948983-653039980672348899870 No 26 >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Probab=99.69 E-value=1e-15 Score=115.28 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=102.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC--CCCCCCCCHHH-------HHHH----HCCCCCCC Q ss_conf 76689879879999999999659908998358883211010001--24354236023-------4554----13556521 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFG--FWRKRTLNPES-------NVQF----GEGGAGTF 174 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~--~~~~~~~~~~~-------n~~~----g~ggag~f 174 (549) -.|+|||||.+||++|+.|+++|++|+||||+....+......+ .++....+... ...+ .+.+...+ T Consensus 5 ~DviIIGaGi~GlstA~~La~~G~~V~vlE~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 84 (397) T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCERRLI 84 (397) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHTCCCE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 88999995799999999999789958999489988764655657554002268578999999999999999998551100 Q ss_pred CC-HHHHHH---HHHHCCCHHHHHHHHHHCCCCCCCCCC-------------------CCCCEECCHHHHHHHHHHHHHH Q ss_conf 24-045532---200021178999999966895100136-------------------7641000127999999999999 Q T0604 175 SD-GKLYSQ---VKDPNFYGRKVITEFVEAGAPEEILYV-------------------SKPHIGTFKLVTMIEKMRATII 231 (549) Q Consensus 175 sd-gkl~t~---~~~~~~~~~~vl~~~~~~Ga~~~i~~~-------------------~kph~gtd~~~~vv~~L~~~l~ 231 (549) .+ |.+... ............+...+.|...+.+.. -.|.-++.....++..|.+.++ T Consensus 85 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~ 164 (397) T 2oln_A 85 HEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQ 164 (397) T ss_dssp ECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHHHHH T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCCEEEECCCCEEECCCCCCCCCHHCCC T ss_conf 23331664041023119999999998875276501045777532001234765411563698658735213331001001 Q ss_pred HCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHH Q ss_conf 66988998134332040587589999867848970568993188767999 Q T0604 232 ELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTF 281 (549) Q Consensus 232 ~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~ 281 (549) +.|+++++++.|++|..+++.+. |.|++| ++.|+.||+|+|..+.... T Consensus 165 ~~g~~i~~~~~V~~i~~~~~~~~-V~t~~g-~~~a~~vV~aaG~~s~~l~ 212 (397) T 2oln_A 165 AAGATLRAGETVTELVPDADGVS-VTTDRG-TYRAGKVVLACGPYTNDLL 212 (397) T ss_dssp HTTCEEEESCCEEEEEEETTEEE-EEESSC-EEEEEEEEECCGGGHHHHH T ss_pred CCCCCCCCEEEEEEEEECCCCEE-EECCCC-EEECCCEEEECCCCHHHHH T ss_conf 47853231035642232178417-973896-7725868998882688899 No 27 >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Probab=99.68 E-value=9.6e-16 Score=115.49 Aligned_cols=177 Identities=20% Similarity=0.205 Sum_probs=109.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCC--CCCCCCCCCCCCCCCCCH-------HHHH---HHHCCCCCC Q ss_conf 7766898798799999999996599-08998358883--211010001243542360-------2345---541355652 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEV--RERTKDTFGFWRKRTLNP-------ESNV---QFGEGGAGT 173 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~v--g~r~~~~~~~~~~~~~~~-------~~n~---~~g~ggag~ 173 (549) ..+|||||||..|+.+||.|+++|. +|+||||+... .+.+....++.+....+. .+.. .+.+.+... T Consensus 4 ~~dVvIIGgGi~G~StAy~Lak~G~~dV~llEr~~~~~~sGsS~~~aG~i~~~~~~~~~~~la~~s~~~~~~l~e~~~~~ 83 (830) T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVSC 83 (830) T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTEES T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999349999999999967998299996888898852110113662679999999999999999999998764898 Q ss_pred C-CCHHHHHHH-HHHCCCHHHHHHHHHHCCCCCCCCCCC-------------------CCCEECCHHHHHHHHHHHHHHH Q ss_conf 1-240455322-000211789999999668951001367-------------------6410001279999999999996 Q T0604 174 F-SDGKLYSQV-KDPNFYGRKVITEFVEAGAPEEILYVS-------------------KPHIGTFKLVTMIEKMRATIIE 232 (549) Q Consensus 174 f-sdgkl~t~~-~~~~~~~~~vl~~~~~~Ga~~~i~~~~-------------------kph~gtd~~~~vv~~L~~~l~~ 232 (549) | ..|.|.... .+.....+...+....+|.+.+++... .|.-|+.....++..|.+.+++ T Consensus 84 ~~~~G~L~la~t~~~~~~l~~~~~~~~~~G~~~e~ls~~ei~~~~P~l~~~~i~gal~~p~dG~vdp~~~~~al~~~a~~ 163 (830) T 1pj5_A 84 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTES 163 (830) T ss_dssp EECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHHH T ss_pred EEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCEEEEEEECCCEEECHHHHHHHHHHHHHH T ss_conf 89648899974999999999999999985998399899999985777786762799991897899799999999999986 Q ss_pred CCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHHHHH Q ss_conf 6988998134332040587589999867848970568993188767999999 Q T0604 233 LGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEML 284 (549) Q Consensus 233 ~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~~~l 284 (549) .|+++++++.|++|..+++++.+|.+.++ ++.|+.||+|+|..++....++ T Consensus 164 ~Gv~i~~~t~V~~i~~~~~~~~~v~t~~g-~i~a~~vV~aaG~~a~~l~~~~ 214 (830) T 1pj5_A 164 AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMI 214 (830) T ss_dssp TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTT T ss_pred CCCEEEEEEEEEEEEEECCEEEEEEECCC-CEEEEEEEECCCHHHHHHHHHC T ss_conf 79949998613549995993478874455-1331024422321367777642 No 28 >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Probab=99.66 E-value=4.2e-14 Score=105.18 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=39.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCCCCCCCCC Q ss_conf 677668987987999999999965------99089983588832110100 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM------GFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~------G~~V~VlErg~~vg~r~~~~ 149 (549) .++||||||||+|||.||+.|+++ |++|+|||+.+.+|+|.... T Consensus 4 ~~k~V~IIGaGiaGL~aA~~L~~~~~~~~~G~~V~vlEa~~~~GGr~~t~ 53 (470) T 3i6d_A 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTV 53 (470) T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEE T ss_conf 99739998987899999999986474447998489997899880746899 No 29 >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Probab=99.65 E-value=9.1e-16 Score=115.64 Aligned_cols=172 Identities=18% Similarity=0.186 Sum_probs=100.6 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCHHHHH Q ss_conf 877677668987987999999999965990899835888321101000124354236023455413556-5212404553 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGA-GTFSDGKLYS 181 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gga-g~fsdgkl~t 181 (549) ...|+-.|+|||||||||++|+.|+++|++|+||||.+.+....+ ...+++.+...+...|. ..+...... T Consensus 45 ~~~~tTDVlIVGaGpaGL~~A~~Lar~Gi~V~ViEr~~~~~~~~r-------a~~l~~~sleiL~~lGl~d~i~~~~~~- 116 (570) T 3fmw_A 45 DAALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDR-------AGALHIRTVETLDLRGLLDRFLEGTQV- 116 (570) T ss_dssp ------CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSS-------CCCBCHHHHHHHHTTTCHHHHTTSCCB- T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------EEEECHHHHHHHHHCCCHHHHHHCCCC- T ss_conf 888987889999199999999999978999999918999888983-------899898999999987997999832712- Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEE-ECC Q ss_conf 2200021178999999966895100136764100012799999999999966988998134332040587589999-867 Q T0604 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVT-LSN 260 (549) Q Consensus 182 ~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~-t~~ 260 (549) .....+.. ....+..........|+........+.+.|++.+.+.|++|+++++|+++..+++.+.... ..+ T Consensus 117 -~~~~~~~~------~~~~~~~~~~~~~~~p~~~~i~q~~le~~L~~~a~~~gv~v~~g~~v~~v~~~~d~v~v~~~~~~ 189 (570) T 3fmw_A 117 -AKGLPFAG------IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPS 189 (570) T ss_dssp -CSBCCBTT------BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETT T ss_pred -CCEEEEEC------CCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf -32258833------65563104644467880689659999999999998679979974201232223345321112367 Q ss_pred -CCEEEECEEEEECCCCHHHHHHHHHHCCCCCCC Q ss_conf -848970568993188767999999966971114 Q T0604 261 -GEEIKSRHVVLAVGHSARDTFEMLHERGVYMEA 293 (549) Q Consensus 261 -g~~i~ad~VVlAtGhsard~~~~l~~~Gi~~~~ 293 (549) ++++.++.||.|+|..+. . -+.+|+.+.. T Consensus 190 g~~~~~adlvVgADG~~S~--V--R~~lg~~~~~ 219 (570) T 3fmw_A 190 GPYPVRARYGVGCDGGRST--V--RRLAADRFPG 219 (570) T ss_dssp EEEEEEESEEEECSCSSCH--H--HHHTTCCCCC T ss_pred CCCCEEEEEEEECCCCCCC--C--CCCCCCCCCC T ss_conf 7632011089950686542--1--1124655542 No 30 >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 1.80A {Streptomyces SP} Probab=99.64 E-value=2.3e-15 Score=113.11 Aligned_cols=163 Identities=18% Similarity=0.237 Sum_probs=95.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCHHHHHHHH Q ss_conf 677668987987999999999965990899835888321101000124354236023455413556-5212404553220 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGA-GTFSDGKLYSQVK 184 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gga-g~fsdgkl~t~~~ 184 (549) ..-.|+||||||+||++|+.|+++|++|+||||.+.+....+ ...+++.+...+...|. ..+.... .... T Consensus 10 ~d~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~r-------a~~l~~~tle~L~~lGl~~~~~~~~--~~~~ 80 (500) T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESR-------GLGFTARTMEVFDQRGILPRFGEVE--TSTQ 80 (500) T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCC-------SEEECHHHHHHHHTTTCGGGGCSCC--BCCE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCE-------EEEECHHHHHHHHHCCCHHHHHHHC--CCCC T ss_conf 899989999098999999999878999999858999888982-------9998989999999879978986432--4543 Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE--CCC- Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998--678- Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL--SNG- 261 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t--~~g- 261 (549) .... .............++........+...|++.+.+.|++|+++++|+++..+++.++ +.+ .++ T Consensus 81 --~~~~--------~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~a~~~g~~v~~g~~v~~i~~~~~~v~-v~~~~~~g~ 149 (500) T 2qa1_A 81 --GHFG--------GLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVT-VEVRGPEGK 149 (500) T ss_dssp --EEET--------TEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEE-EEEEETTEE T ss_pred --CEEC--------CEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCEEE-EEEECCCCC T ss_conf --1343--------50245444566666312136999999999977655947843608987531444047-888669997 Q ss_pred CEEEECEEEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 4897056899318876799999996697111 Q T0604 262 EEIKSRHVVLAVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 262 ~~i~ad~VVlAtGhsard~~~~l~~~Gi~~~ 292 (549) +++.+|.||.|+|..+. .-+.+|+.++ T Consensus 150 ~~i~a~~vVgADG~~S~----VR~~lg~~~~ 176 (500) T 2qa1_A 150 HTLRAAYLVGCDGGRSS----VRKAAGFDFP 176 (500) T ss_dssp EEEEESEEEECCCTTCH----HHHHTTCCCC T ss_pred EEEEEEEEEECCCCCCC----CHHHCCCCCC T ss_conf 89998899714777542----0233077666 No 31 >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3} Probab=99.64 E-value=1.1e-14 Score=108.94 Aligned_cols=175 Identities=21% Similarity=0.145 Sum_probs=101.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH-------HHH----CCCCCCCCC Q ss_conf 766898798799999999996599089983588832110100012435423602345-------541----355652124 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNV-------QFG----EGGAGTFSD 176 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~-------~~g----~ggag~fsd 176 (549) .+|+|||||.+||.+|+.|+++|++|+|||++....+.+....++......+..... ... +.....-.. T Consensus 6 ~DV~IIGaGiaGls~A~~L~~~G~~V~llE~~~~~~gaS~~~~~~i~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~ 85 (382) T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYGFSFKQT 85 (382) T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHTCCEECC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999991099999999999889939998699998763256476351458977999999999999999998719763347 Q ss_pred HHHHHHHH-HHCCCHHHHHHHHHHCCCCCCCCCC-------------------CCCCEECCHHHHHHHHHHHHHHHCCCE Q ss_conf 04553220-0021178999999966895100136-------------------764100012799999999999966988 Q T0604 177 GKLYSQVK-DPNFYGRKVITEFVEAGAPEEILYV-------------------SKPHIGTFKLVTMIEKMRATIIELGGE 236 (549) Q Consensus 177 gkl~t~~~-~~~~~~~~vl~~~~~~Ga~~~i~~~-------------------~kph~gtd~~~~vv~~L~~~l~~~G~~ 236 (549) +.+..... ..........+...+.+........ -.+.-++.....++..+.+.+.+.|++ T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~~~~~g~~ 165 (382) T 1y56_B 86 GYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAK 165 (382) T ss_dssp CEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHHHTTCE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCE T ss_conf 85322233222221155689998629851113678898748743233442354278754569778523245678736958 Q ss_pred EEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHHHH Q ss_conf 99813433204058758999986784897056899318876799999 Q T0604 237 IRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEM 283 (549) Q Consensus 237 i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~~~ 283 (549) +++++.|+++..+++++.+|.+.++ ++.++.+|+|+|..+.....+ T Consensus 166 ~~~~~~V~~l~~~~~~~~~v~~~~~-~i~a~~~v~~~g~~~~~~~~~ 211 (382) T 1y56_B 166 LLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAM 211 (382) T ss_dssp EECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHH T ss_pred EEECCEEEEEEEECCEEEEEEECCE-EEEECCEEEECCCCCCCCCCC T ss_conf 9946568899995994899994766-898222144223344322222 No 32 >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-fuoric acid, oxidoreductase; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Probab=99.64 E-value=5.8e-15 Score=110.59 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=105.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--CCCCCCCCCCCC--------CHHHHHHH----HCCCCCCC Q ss_conf 66898798799999999996599089983588832110--100012435423--------60234554----13556521 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT--KDTFGFWRKRTL--------NPESNVQF----GEGGAGTF 174 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~--~~~~~~~~~~~~--------~~~~n~~~----g~ggag~f 174 (549) .|+|||||.+|+++|+.|+++|++|+|||+++..+... ....+++..... ...+...+ .+.+...+ T Consensus 5 Dv~IIGaGi~G~s~A~~La~~G~~V~vie~~~~~~~~~as~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 84 (389) T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHKIF 84 (389) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSCCE T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 98999924999999999997899589995589997557466666666155798689999999999999999998398724 Q ss_pred -CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC-------------------CCCEECCHHHHHHHHHHHHHHHCC Q ss_conf -240455322000211789999999668951001367-------------------641000127999999999999669 Q T0604 175 -SDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVS-------------------KPHIGTFKLVTMIEKMRATIIELG 234 (549) Q Consensus 175 -sdgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~-------------------kph~gtd~~~~vv~~L~~~l~~~G 234 (549) ..|.+...............+.....|.+.+.+... .|.-++.....++..|.+.+++.| T Consensus 85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~G 164 (389) T 2gf3_A 85 TKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARG 164 (389) T ss_dssp ECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHHTT T ss_pred ECCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHCC T ss_conf 14527999721008999999999997298648731777631377656764314784155421303010344444464179 Q ss_pred CEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHH Q ss_conf 88998134332040587589999867848970568993188767999 Q T0604 235 GEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTF 281 (549) Q Consensus 235 ~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~ 281 (549) +++.++++|+++..+++.. .|.+.++ ++.++.||+|+|..+.... T Consensus 165 ~~~~~~~~V~~~~~~~~~~-~v~~~~g-~i~a~~vV~aaG~~~~~l~ 209 (389) T 2gf3_A 165 AKVLTHTRVEDFDISPDSV-KIETANG-SYTADKLIVSMGAWNSKLL 209 (389) T ss_dssp CEEECSCCEEEEEECSSCE-EEEETTE-EEEEEEEEECCGGGHHHHG T ss_pred CCCCCCEEEEEEEECCCEE-EEEECCE-EEEECCEEEECCCCHHHHH T ss_conf 6211230467763012203-6763130-7971416897373278888 No 33 >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 2.70A {Streptomyces} Probab=99.62 E-value=4.3e-15 Score=111.41 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=90.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCHHHHHHH Q ss_conf 767766898798799999999996599089983588832110100012435423602345541355-6521240455322 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGG-AGTFSDGKLYSQV 183 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gg-ag~fsdgkl~t~~ 183 (549) .....|+||||||+||++|+.|+++|++|+||||.+.+....+. ..+++.+...+...| ...+.. ..... T Consensus 10 r~D~dVlIVGaGpaGl~~A~~La~~Gi~v~viEr~~~~~~~~ra-------~~l~~~tle~l~~lGl~~~~~~--~~~~~ 80 (499) T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRG-------LGFTARTMEVFDQRGILPAFGP--VETST 80 (499) T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCS-------EEECHHHHHHHHHTTCGGGGCS--CCEES T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE-------EEECHHHHHHHHHCCCHHHHHH--HCCCC T ss_conf 28999999991989999999999789999999189998889839-------9989899999998799567422--13020 Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEE-EEECCC- Q ss_conf 000211789999999668951001367641000127999999999999669889981343320405875899-998678- Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITG-VTLSNG- 261 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~g-V~t~~g- 261 (549) . ..+.. ............+.........+...|++.+.+.|++++++++|+++..+++.++. +...+| T Consensus 81 ~-~~~~~---------~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~gv~v~~g~~v~~v~~~~~~v~v~~~~~~g~ 150 (499) T 2qa2_A 81 Q-GHFGG---------RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGP 150 (499) T ss_dssp E-EEETT---------EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCE T ss_pred E-EEECC---------EEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEECCCCC T ss_conf 2-57655---------1601234566778646526999999999999856938835828997640221268888769988 Q ss_pred CEEEECEEEEECCCC Q ss_conf 489705689931887 Q T0604 262 EEIKSRHVVLAVGHS 276 (549) Q Consensus 262 ~~i~ad~VVlAtGhs 276 (549) +++.++.||.|+|.. T Consensus 151 ~~i~a~~vVgADG~~ 165 (499) T 2qa2_A 151 RSLTTRYVVGCDGGR 165 (499) T ss_dssp EEEEEEEEEECCCTT T ss_pred EEEEEEEEEECCCCC T ss_conf 899998998428987 No 34 >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Probab=99.61 E-value=3.8e-15 Score=111.71 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=86.9 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--------CCC Q ss_conf 877677668987987999999999965990899835888321101000124354236023455413556--------521 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGA--------GTF 174 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gga--------g~f 174 (549) ......+|+|||||||||+||+.|++.|++|+||||...+..+.. ..+.+.+...+...|. ..+ T Consensus 19 ~~m~rtdVvIVGgGpAGl~aA~~LAr~G~~VtLiEr~~~pr~~vG--------eal~P~~~~~L~~LGl~e~l~a~~~~~ 90 (591) T 3i3l_A 19 SHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG--------ESLLPGTMSILNRLGLQEKIDAQNYVK 90 (591) T ss_dssp -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCC--------CBCCHHHHHHHHHTTCHHHHHHHCCEE T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE--------EEECHHHHHHHHHCCCHHHHHHCCCCC T ss_conf 999869989989599999999999968998999918999865605--------255889999999869947887458710 Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECC-CEE Q ss_conf 2404553220002117899999996689510013676410001279999999999996698899813433204058-758 Q T0604 175 SDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQI 253 (549) Q Consensus 175 sdgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~-g~v 253 (549) ..+.......+... +...++.+....+ ...+........+.+.|++.+++.|++++++++|+++..++ +.+ T Consensus 91 ~~g~~f~~g~~~~~-------~~~~~~~~~~~~~-~~~~~~~i~R~~l~~~L~~~A~~~Gv~v~~g~~V~~V~~~d~~~~ 162 (591) T 3i3l_A 91 KPSATFLWGQDQAP-------WTFSFAAPKVAPW-VFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRV 162 (591) T ss_dssp ECEEEEECSSSCCC-------EEEECCCC--CTT-CCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCE T ss_pred CCCEEEEECCCCCE-------EEEECCCCCCCCC-CCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEECCEE T ss_conf 04169994787631-------5750456655566-667346874999999999999867999996858888875201024 Q ss_pred EEEEECCCC--EEEECEEEEECCCCH Q ss_conf 999986784--897056899318876 Q T0604 254 TGVTLSNGE--EIKSRHVVLAVGHSA 277 (549) Q Consensus 254 ~gV~t~~g~--~i~ad~VVlAtGhsa 277 (549) ..+...+|+ +++||.||.|+|..+ T Consensus 163 ~~~~~~~g~~~~i~AdlvVdAdG~~S 188 (591) T 3i3l_A 163 VLTVRRGGESVTVESDFVIDAGGSGG 188 (591) T ss_dssp EEEEEETTEEEEEEESEEEECCGGGC T ss_pred EEEEECCCCCCCCCCCEEECCCCCCC T ss_conf 44320267642234654663789876 No 35 >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Probab=99.61 E-value=1.1e-14 Score=108.79 Aligned_cols=140 Identities=22% Similarity=0.215 Sum_probs=86.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023-45541355652124045532200 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPES-NVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~-n~~~g~ggag~fsdgkl~t~~~~ 185 (549) .-.|||||||||||+||+.|+++|++|+||||...+..+.+. .+.+.+ ...+...+ T Consensus 7 ~yDVvIVGaGpaGl~~A~~Lar~G~~V~VlEr~~~Pr~~~G~--------~l~~~~~~~ll~~lG--------------- 63 (512) T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE--------SLLPATVHGICAMLG--------------- 63 (512) T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCC--------BCCHHHHTTHHHHTT--------------- T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--------EECCHHHHHHHHHCC--------------- T ss_conf 289999995799999999999779958999489997446666--------305889999999879--------------- Q ss_pred HCCCHHHHHHHHHHCCCCC---------------CCC-----CCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 0211789999999668951---------------001-----36764100012799999999999966988998134332 Q T0604 186 PNFYGRKVITEFVEAGAPE---------------EIL-----YVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDD 245 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~---------------~i~-----~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~ 245 (549) +.+.+...+.+. ... .....+........+.+.|++.+.+.|++++++++|++ T Consensus 64 -------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~a~~~Gv~v~~~~~v~~ 136 (512) T 3e1t_A 64 -------LTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVID 136 (512) T ss_dssp -------CHHHHHTTTCCEECEEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEE T ss_pred -------CHHHHHHCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEE T ss_conf -------8699986399721306999378873242143225577777378978999999999988756948982532334 Q ss_pred CEECCCEEEEEEEC--CCC--EEEECEEEEECCCC Q ss_conf 04058758999986--784--89705689931887 Q T0604 246 LHMEDGQITGVTLS--NGE--EIKSRHVVLAVGHS 276 (549) Q Consensus 246 i~~~~g~v~gV~t~--~g~--~i~ad~VVlAtGhs 276 (549) +..+++++.++.+. +|. ++.++.||.|+|.. T Consensus 137 v~~~~~~~~~~~~~~~~G~~~~i~a~~vV~AdG~~ 171 (512) T 3e1t_A 137 VLFEGERAVGVRYRNTEGVELMAHARFIVDASGNR 171 (512) T ss_dssp EEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTT T ss_pred EEEECCCCCCEEEEECCCCEEEEEEEEEEECCCHH T ss_conf 66420111103443036752799856886124014 No 36 >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Probab=99.60 E-value=5.1e-15 Score=110.95 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=99.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCC--------HHHHHHHH-----CCC Q ss_conf 677668987987999999999965990899835888321101000--124354236--------02345541-----355 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTF--GFWRKRTLN--------PESNVQFG-----EGG 170 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~--~~~~~~~~~--------~~~n~~~g-----~gg 170 (549) |+-.|||||||.+|+++|+.|+++|++|+|||+............ ...+....+ ..+...+. .+. T Consensus 1 ~~yDvvIIG~Gi~G~s~A~~La~~G~~V~lie~~~~~~~~gss~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~l~~~~~~ 80 (372) T 2uzz_A 1 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELSRHNED 80 (372) T ss_dssp -CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHTTCSS T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 97789999956999999999997899599991899985001367776722102477468999999999999999997488 Q ss_pred CCCCC-CHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC-------------------CCCCCCEECCHHHHHHHHHHHHH Q ss_conf 65212-40455322000211789999999668951001-------------------36764100012799999999999 Q T0604 171 AGTFS-DGKLYSQVKDPNFYGRKVITEFVEAGAPEEIL-------------------YVSKPHIGTFKLVTMIEKMRATI 230 (549) Q Consensus 171 ag~fs-dgkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~-------------------~~~kph~gtd~~~~vv~~L~~~l 230 (549) ...|. .+.+.....+. .......+....++.+.+.. ....|+.+......++..+.+.+ T Consensus 81 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~v~p~~~~~~l~~~~ 159 (372) T 2uzz_A 81 DPIFVRSGVINLGPADS-TFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLA 159 (372) T ss_dssp SCSEECCCEEEEEETTC-HHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHH T ss_pred CCCEECCCEEEEEECHH-HHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHHHHHHH T ss_conf 83153057899971423-79999999999749970322256667655655566644799606631120677777899999 Q ss_pred HHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHH Q ss_conf 9669889981343320405875899998678489705689931887679 Q T0604 231 IELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARD 279 (549) Q Consensus 231 ~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard 279 (549) .+.|++++++++|+++..+++.+ .|.|.+| ++.+|.||+|+|..+.. T Consensus 160 ~~~G~~~~~~~~V~~i~~~~~~~-~v~t~~g-~i~a~~vV~a~G~~~~~ 206 (372) T 2uzz_A 160 KEAGCAQLFNCPVTAIRHDDDGV-TIETADG-EYQAKKAIVCAGTWVKD 206 (372) T ss_dssp HHTTCEEECSCCEEEEEECSSSE-EEEESSC-EEEEEEEEECCGGGGGG T ss_pred HHCCCCEEEEEEEEEEECCCCCC-CCCCCCC-CCCCCCEEEECCHHHHH T ss_conf 97398414312566432046530-0012377-23036559924640777 No 37 >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Probab=99.59 E-value=9.1e-14 Score=103.07 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHHHHCC-CEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 7999999999999669-8899813433204058758999986784897056899318 Q T0604 219 LVTMIEKMRATIIELG-GEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G-~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) ...+...|.+.+...+ ++++++++|+.|..++++++ |++.+|+++.||.||+|+. T Consensus 254 ~~~l~~~l~~~l~~~~~~~i~~n~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p 309 (495) T 2vvm_A 254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAAR-VTARDGREFVAKRVVCTIP 309 (495) T ss_dssp HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEE-EEETTCCEEEEEEEEECCC T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEE-EEECCCCCCCCCCEEEECC T ss_conf 3266677887765413742533764310123566135-8942784002463488258 No 38 >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Probab=99.59 E-value=2.1e-14 Score=107.14 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=71.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) ..|||||||||||+||+.|++.|++|+|+|+. +++.... ..+-+ .+ T Consensus 16 yDvvIIG~GpAGlsaA~~l~~~g~~v~lie~~--~GG~~~~-----------~~~i~--------~~------------- 61 (323) T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE-----------AGIVD--------DY------------- 61 (323) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG-----------CCEEC--------CS------------- T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC--CCCEEEE-----------CCCCC--------CC------------- T ss_conf 46999898889999999999789989999806--8965774-----------27768--------82------------- Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEEC Q ss_conf 11789999999668951001367641000127999999999999669889981343320405875899998678489705 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR 267 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad 267 (549) .+ ........+.+.+.+.+...+++++.+ .+..+...+... .+....+..+.++ T Consensus 62 ------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~~~~~ 115 (323) T 3f8d_A 62 ------------LG------------LIEIQASDMIKVFNKHIEKYEVPVLLD-IVEKIENRGDEF-VVKTKRKGEFKAD 115 (323) T ss_dssp ------------TT------------STTEEHHHHHHHHHHHHHTTTCCEEES-CEEEEEEC--CE-EEEESSSCEEEEE T ss_pred ------------CC------------CCCCCHHHHHHHHHHHHHHHCCCCCCC-EEEEEEECCCCE-EEEEEEEEEEEEE T ss_conf ------------77------------755656999999875323203432134-699985148724-8885212699986 Q ss_pred EEEEECCCC Q ss_conf 689931887 Q T0604 268 HVVLAVGHS 276 (549) Q Consensus 268 ~VVlAtGhs 276 (549) .+|+|+|.+ T Consensus 116 ~liiAtG~~ 124 (323) T 3f8d_A 116 SVILGIGVK 124 (323) T ss_dssp EEEECCCCE T ss_pred EEEECCCCC T ss_conf 999856886 No 39 >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Probab=99.58 E-value=2e-14 Score=107.23 Aligned_cols=55 Identities=24% Similarity=0.406 Sum_probs=47.1 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 79999999999996698899813433204058758999986784897056899318 Q T0604 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) ...+.+.|.+.++..|++|+++++|++|..+++++++|.++ ++++.||.||.... T Consensus 233 ~~~l~~~l~~~~~~~G~~i~ln~~V~~I~~~~~~v~~v~~~-~~~~~ad~VV~~~~ 287 (433) T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSE-GEVARCKQLICDPS 287 (433) T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEET-TEEEECSEEEECGG T ss_pred HHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCEEEEEEEC-CEEEECCEEEECCC T ss_conf 69999999999986197088338568999989999999939-97999098999901 No 40 >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* Probab=99.57 E-value=2.3e-14 Score=106.81 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=50.6 Q ss_pred HHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 99996689510013676410001279999999999996698899813433204058758999986784897056899318 Q T0604 195 TEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 195 ~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) ..|..+|........ .++......+.+.+.+.+.+++.|++++++++|+.+..+++.+ .|.+.+|+++++|.||+|+| T Consensus 184 ~~l~~~G~~vt~i~~-~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~V~~i~~~~~~~-~v~~~~g~~i~aD~vi~A~G 261 (455) T 2yqu_A 184 VVWHRLGAEVIVLEY-MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGA-RVELEGGEVLEADRVLVAVG 261 (455) T ss_dssp HHHHHTTCEEEEECS-SSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEE-EEEETTSCEEEESEEEECSC T ss_pred HHHHHCCCEEEEEEE-CCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCEE-EEEECCCCEEEEEEEEEEEC T ss_conf 888517977999993-3644554566676678888750766899503579999528869-99989997798416899317 Q ss_pred C Q ss_conf 8 Q T0604 275 H 275 (549) Q Consensus 275 h 275 (549) . T Consensus 262 ~ 262 (455) T 2yqu_A 262 R 262 (455) T ss_dssp E T ss_pred C T ss_conf 8 No 41 >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} Probab=99.56 E-value=7.4e-14 Score=103.65 Aligned_cols=110 Identities=22% Similarity=0.252 Sum_probs=79.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 67766898798799999999996599089983588832110100012435423602345541355652124045532200 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) |+-.|+|||||||||+||+.|++.|++|+|+|++...+.-.... ..| T Consensus 1 MkyDVvIIG~GpAGlsaA~~lar~g~~v~lie~~~~~g~~~~~~----------------------~~~----------- 47 (297) T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS----------------------HGF----------- 47 (297) T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC----------------------CSS----------- T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC----------------------CCC----------- T ss_conf 98768999987999999999998899789990799887310115----------------------776----------- Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEE Q ss_conf 02117899999996689510013676410001279999999999996698899813433204058758999986784897 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ 265 (549) ...+. .....+...+++++.+++...+.+.+|+++..+++.+. |.+.+|+++. T Consensus 48 -----------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~ 100 (297) T 3fbs_A 48 -----------------------LGQDG---KAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFI-VEIDGGRRET 100 (297) T ss_dssp -----------------------TTCTT---CCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEE-EEETTSCEEE T ss_pred -----------------------CCCCC---CCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEE-EEECCCCEEE T ss_conf -----------------------68688---89799999999999866978999028999993598289-9989997998 Q ss_pred ECEEEEECCC Q ss_conf 0568993188 Q T0604 266 SRHVVLAVGH 275 (549) Q Consensus 266 ad~VVlAtGh 275 (549) +++||+|||. T Consensus 101 ~~~lviAtG~ 110 (297) T 3fbs_A 101 AGRLILAMGV 110 (297) T ss_dssp EEEEEECCCC T ss_pred ECEEEEECCC T ss_conf 0689991022 No 42 >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, structural genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Probab=99.56 E-value=6.8e-14 Score=103.86 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=82.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) .+|+|||||||||.||+.|++.|++++++|+...+|+.... .+....+........... ...+ .. T Consensus 5 ~dvvIIGaGpaGl~aA~~l~~~G~~~~~v~e~~~~GG~~~~---~p~~~~~~~~~~~~~~~~-~~~~-----------~~ 69 (369) T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKH---WPKSTRTITPSFTSNGFG-MPDM-----------NA 69 (369) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHT---SCTTCBCSSCCCCCGGGT-CCCT-----------TC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEE---CCCCCCCCCHHHHHCCCC-CCCC-----------CC T ss_conf 99999886599999999998689970999916996753450---578530256154201114-5543-----------32 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEEC Q ss_conf 11789999999668951001367641000127999999999999669889981343320405875899998678489705 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR 267 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad 267 (549) .. ....+..... ..++ ....+.+.++..+.+.+++++++++|+.+..+++.++ |.+.++ ++.+| T Consensus 70 ~~----------~~~~p~~~~~-~~~~---~~~~~~~y~~~~~~~~~l~i~~~~~V~~v~~~~~~~~-v~~~~~-~~~a~ 133 (369) T 3d1c_A 70 IS----------MDTSPAFTFN-EEHI---SGETYAEYLQVVANHYELNIFENTVVTNISADDAYYT-IATTTE-TYHAD 133 (369) T ss_dssp SS----------TTCCHHHHHC-CSSC---BHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEE-EEESSC-CEEEE T ss_pred CC----------CCCCCCCCCC-CCCC---CHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEE-EEECCC-EEEEC T ss_conf 23----------3557677632-2357---9999999999989873962761613799971473799-993894-99978 Q ss_pred EEEEECCCC Q ss_conf 689931887 Q T0604 268 HVVLAVGHS 276 (549) Q Consensus 268 ~VVlAtGhs 276 (549) +||+|||+. T Consensus 134 ~vviATG~~ 142 (369) T 3d1c_A 134 YIFVATGDY 142 (369) T ss_dssp EEEECCCST T ss_pred EEEECCCCC T ss_conf 899912788 No 43 >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, plasmid, aromatic hydroxylase, nicotine degradation, flavin mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Probab=99.55 E-value=7.2e-14 Score=103.70 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=81.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 67766898798799999999996599089983588832110100012435423602345541355652124045532200 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) .+.||+|||||||||++|+.|+++|++|+||||.+..-... +..-.+.+.....+...|.. . + .+...... T Consensus 4 ~~~~V~IiGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~------G~gi~l~~~~~~~L~~lGl~-~-~-~~~~~~~~ 74 (397) T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF------GTGIVVQPELVHYLLEQGVE-L-D-SISVPSSS 74 (397) T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCC------SCEEECCHHHHHHHHHTTCC-G-G-GTCBCCCE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------CEEEEECHHHHHHHHHCCCC-H-H-HHCCCCCC T ss_conf 99809998978899999999997899999997999987887------04898698999999976995-3-6-64377663 Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEE Q ss_conf 02117899999996689510013676410001279999999999996698899813433204058758999986784897 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ 265 (549) ... +++ ..|-............ ........+++.+ ....++++++|+++..+++.++ |++.||+++. T Consensus 75 ~~~-----~~~--~~g~~~~~~~~~~~~~---~~~~l~~~l~~~l--~~~~i~~~~~v~~~~~~~~~v~-v~~~dG~~~~ 141 (397) T 2vou_A 75 MEY-----VDA--LTGERVGSVPADWRFT---SYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQ-MRFSDGTKAE 141 (397) T ss_dssp EEE-----EET--TTCCEEEEEECCCCEE---EHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEE-EEETTSCEEE T ss_pred EEE-----EEC--CCCCEECCCCCCCCCC---CHHHHHHHHHHCC--CCCEEEECCEEEEEEECCCEEE-EEECCCCEEE T ss_conf 399-----975--7884751466422312---2899998887438--8609995889999994087799-9957998877 Q ss_pred ECEEEEECCC-CH Q ss_conf 0568993188-76 Q T0604 266 SRHVVLAVGH-SA 277 (549) Q Consensus 266 ad~VVlAtGh-sa 277 (549) +|.||.|+|. |. T Consensus 142 adllVgADG~~S~ 154 (397) T 2vou_A 142 ANWVIGADGGASV 154 (397) T ss_dssp ESEEEECCCTTCH T ss_pred EEEEECCCCCCCH T ss_conf 5277425776323 No 44 >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Probab=99.55 E-value=5.1e-14 Score=104.67 Aligned_cols=45 Identities=38% Similarity=0.611 Sum_probs=40.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCC Q ss_conf 767766898798799999999996599-089983588832110100 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKDT 149 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~vg~r~~~~ 149 (549) ....+|+|||||+|||.||+.|+++|+ +|+|||+.+.+|+|.... T Consensus 4 ~~~~~V~IIGaG~aGLsaA~~L~~~G~~~V~vlE~~~~iGGr~~t~ 49 (424) T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSP 49 (424) T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCC T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEE T ss_conf 9999899989848999999999856999889995799880775688 No 45 >3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} Probab=99.55 E-value=2.1e-14 Score=107.03 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=89.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) -.|+|||||||||+||+.|+++|++|+||||.+.++........ +.+.....++......+.. ..+.... T Consensus 5 yDViIVGaG~aGl~~A~~La~~G~~V~viEr~~~~~~~~~~g~~------l~~~~l~~l~~~~~~~~~~----~~~~~~~ 74 (397) T 3cgv_A 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEG------LSKGILNEADIKADRSFIA----NEVKGAR 74 (397) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCE------EETHHHHHTTCCCCTTTEE----EEESEEE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEECC------CCHHHHHHCCCCCHHHHHH----CCCEEEE T ss_conf 88899994899999999999789968999179988987743364------5799998669973033553----5200599 Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC-CC--EE Q ss_conf 1178999999966895100136764100012799999999999966988998134332040587589999867-84--89 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN-GE--EI 264 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~-g~--~i 264 (549) ..... ........................+...|++.+.+.|+++++.+++++...+++.+.++.+.. ++ ++ T Consensus 75 ~~~~~-----~~~~~~~~~~~~~~~~~~~i~r~~~~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (397) T 3cgv_A 75 IYGPS-----EKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDV 149 (397) T ss_dssp EECTT-----CSSCEEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEE T ss_pred EEECC-----CCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCCCCCEECCCCCCEEE T ss_conf 99689-----9667612444567863279889999999999998759831212013210111111122100023550699 Q ss_pred EECEEEEECCCCH Q ss_conf 7056899318876 Q T0604 265 KSRHVVLAVGHSA 277 (549) Q Consensus 265 ~ad~VVlAtGhsa 277 (549) .|+.||.|+|..+ T Consensus 150 ~~~~vv~AdG~~s 162 (397) T 3cgv_A 150 RAKMVIAADGFES 162 (397) T ss_dssp EEEEEEECCCTTC T ss_pred EEEEEEECCCCCC T ss_conf 8647996787762 No 46 >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3k7t_A* Probab=99.55 E-value=4.1e-14 Score=105.29 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=42.0 Q ss_pred HHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 999999966988998134332040587589999867848970568993188 Q T0604 225 KMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 225 ~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) .|.+.+.+..++|+++++|+.|..+++.+. |++.+|+++.||.||+|+.. T Consensus 208 ~l~~~l~~~l~~i~~~~~V~~i~~~~~~v~-V~~~~g~~~~ad~VV~a~p~ 257 (431) T 3k7m_X 208 DLVDAMSQEIPEIRLQTVVTGIDQSGDVVN-VTVKDGHAFQAHSVIVATPM 257 (431) T ss_dssp HHHHHHHTTCSCEESSCCEEEEECSSSSEE-EEETTSCCEEEEEEEECSCG T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCEEE-EEECCCCEEEEEEEEECCCH T ss_conf 999998720331012761589998599389-99899979860169954798 No 47 >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrate binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* Probab=99.54 E-value=1.2e-13 Score=102.31 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=41.5 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 87767766898798799999999996599089983588832110100 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) +...+++|+|||||+|||+||+.|+++|++|+|||+.+.+|+|.+.. T Consensus 29 ~~~~pk~VvVIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GGr~~T~ 75 (498) T 2iid_A 29 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY 75 (498) T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEE T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 99999988998988899999999986899999995799881534478 No 48 >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8} Probab=99.53 E-value=1.4e-13 Score=101.87 Aligned_cols=114 Identities=21% Similarity=0.364 Sum_probs=85.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) .+|||||||||||+||+.|++.|++|+|+|+.+.+|+..... .+ .+..+ +. T Consensus 6 ~dVvVIGgG~AGl~aA~~La~~G~~V~lvEk~~~~GG~~~~~---------~~-~~~~~------------------~~- 56 (335) T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL---------YP-EKYIY------------------DV- 56 (335) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT---------CT-TSEEC------------------CS- T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE---------EC-CCCCC------------------CC- T ss_conf 759999987999999999997899889991578778778850---------04-62102------------------54- Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEEC Q ss_conf 11789999999668951001367641000127999999999999669889981343320405875899998678489705 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR 267 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad 267 (549) .+.|+ .....+++.+.+...+++..++++++|+.+..+++.+. |.+.+++.+.++ T Consensus 57 ---------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-V~~~~g~~~~~~ 111 (335) T 2zbw_A 57 ---------------------AGFPK---VYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFK-VTTSQGNAYTAK 111 (335) T ss_dssp ---------------------TTCSS---EEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEE-EEETTSCEEEEE T ss_pred ---------------------CCCCC---CCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEE-EEECCCCEEEEE T ss_conf ---------------------67887---78899999999999870938992255999994197699-997899599986 Q ss_pred EEEEECCC Q ss_conf 68993188 Q T0604 268 HVVLAVGH 275 (549) Q Consensus 268 ~VVlAtGh 275 (549) .+|+|+|. T Consensus 112 ~~iiatg~ 119 (335) T 2zbw_A 112 AVIIAAGV 119 (335) T ss_dssp EEEECCTT T ss_pred EEEEEEEC T ss_conf 78999953 No 49 >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Probab=99.52 E-value=2.7e-14 Score=106.42 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=89.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--------------CC Q ss_conf 7668987987999999999965990899835888321101000124354236023455413556--------------52 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGA--------------GT 173 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gga--------------g~ 173 (549) -.|+||||||+||++|+.|+++|++|+||||.+.+....+. ..+++.+...+...|. +. T Consensus 6 ~DVlIVGaGpaGl~~A~~L~~~Gi~v~v~Er~~~~~~~~ra-------~~l~~~t~~~L~~lGl~~~~~~~~~~~~~~~~ 78 (535) T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRA-------AGQNPRTMELLRIGGVADEVVRADDIRGTQGD 78 (535) T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCS-------CCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE-------EEECHHHHHHHHHCCCHHHHHHHCCCCCCCCC T ss_conf 79899991989999999999789999999489998889829-------99898999999987998999753365654440 Q ss_pred CCC-HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCE Q ss_conf 124-0455322000211789999999668951001367641000127999999999999669889981343320405875 Q T0604 174 FSD-GKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQ 252 (549) Q Consensus 174 fsd-gkl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~ 252 (549) +.. ................ ....... .. ... ..+........+.+.|++.+.+.|++++++++|+++..+++. T Consensus 79 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~--~~--~~~-~~~~~~i~q~~l~~~L~~~a~~~g~~v~~g~~v~~~~~~~~~ 152 (535) T 3ihg_A 79 FVIRLAESVRGEILRTVSES-FDDMVAA--TE--PCT-PAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDD 152 (535) T ss_dssp CEEEEESSSSSCEEEEEESC-HHHHHHT--TG--GGC-SCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGG T ss_pred EEECCCCCCCCCEEECCCCC-CCCCCCC--CC--CCC-CCCEEEECHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEE T ss_conf 23202345466123114545-5542223--35--567-672578609999999999998679879834521358861000 Q ss_pred E-EEE----EECCCC-EEEECEEEEECCCCHHHHHHHHHHCCCCCCCC Q ss_conf 8-999----986784-89705689931887679999999669711148 Q T0604 253 I-TGV----TLSNGE-EIKSRHVVLAVGHSARDTFEMLHERGVYMEAK 294 (549) Q Consensus 253 v-~gV----~t~~g~-~i~ad~VVlAtGhsard~~~~l~~~Gi~~~~k 294 (549) + .+| ...+++ ++.++.||.|+|..+. . -+.+|+.+... T Consensus 153 ~~~~v~~~~~~~~g~~~v~a~~vVgADG~~S~--V--R~~lg~~~~~~ 196 (535) T 3ihg_A 153 AGAGVTARLAGPDGEYDLRAGYLVGADGNRSL--V--RESLGIGRYGH 196 (535) T ss_dssp GCSEEEEEEEETTEEEEEEEEEEEECCCTTCH--H--HHHTTCCEEEE T ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCCHH--H--HHHCCCCCCCC T ss_conf 00135788835997299994589963765112--4--98719886777 No 50 >3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin monooxygenase, oxidoreductase; HET: FAD; 2.10A {Mesorhizobium loti} PDB: 3gmc_A* Probab=99.52 E-value=2.3e-13 Score=100.58 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=83.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .++|+|||||||||.+|+.|+++|++|+||||.+.+......+ .+.+.....+...|. T Consensus 47 ~~~V~IIGaGpaGl~~A~~Lar~G~~V~vlEr~~~~~~~g~gi-------~l~p~~~~~L~~lGl--------------- 104 (415) T 3gmb_A 47 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI-------YLWHNGLRVLEGLGA--------------- 104 (415) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEE-------EEEHHHHHHHHHHTC--------------- T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-------EECHHHHHHHHHCCC--------------- T ss_conf 9989998978899999999997899999990799988785399-------979899999998799--------------- Q ss_pred CCCHHHHHHHHHHCCCC-------------CCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEE Q ss_conf 21178999999966895-------------10013676410001279999999999996698899813433204058758 Q T0604 187 NFYGRKVITEFVEAGAP-------------EEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQI 253 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~-------------~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v 253 (549) .+.+.+.+.. ......+.|.. ......+.+.|++.+.+.|+.+.+++.+.+... ++. T Consensus 105 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~R~~l~~~L~~~~~~~g~~~~~~~~~~~~~~-~~~- 174 (415) T 3gmb_A 105 -------LDDVLQGSHTPPTYETWMHNKSVSKETFNGLPWR-IMTRSHLHDALVNRARALGVDISVNSEAVAADP-VGR- 174 (415) T ss_dssp -------HHHHHTTCBCCSCEEEEETTEEEEEECGGGCCEE-EEEHHHHHHHHHHHHHHHTCEEESSCCEEEEET-TTE- T ss_pred -------HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEE-EEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCC- T ss_conf -------1899951788742699964875432135885056-653236666778776523874223643222223-321- Q ss_pred EEEEECCCCEEEECEEEEECCCC Q ss_conf 99998678489705689931887 Q T0604 254 TGVTLSNGEEIKSRHVVLAVGHS 276 (549) Q Consensus 254 ~gV~t~~g~~i~ad~VVlAtGhs 276 (549) ++..+|.++.+|.||.|+|.. T Consensus 175 --v~~~~g~~~~a~~vI~ADG~~ 195 (415) T 3gmb_A 175 --LTLQTGEVLEADLIVGADGVG 195 (415) T ss_dssp --EEETTSCEEECSEEEECCCTT T ss_pred --CCCCCCCEEEEEEEEEECCCC T ss_conf --012356414689998623567 No 51 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Probab=99.51 E-value=7.3e-13 Score=97.41 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=37.9 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCCCCCC Q ss_conf 877677668987987999999999965990-8998358883211 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFN-PIIVERGKEVRER 145 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~-V~VlErg~~vg~r 145 (549) +....+||+|||||||||+||+.|+++|++ |+|||+.+.+|+- T Consensus 183 ~~~~gkKVaIIGaGPAGLsAA~~Lar~G~~~VtV~Ek~~~~GGl 226 (1025) T 1gte_A 183 PEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL 226 (1025) T ss_dssp CGGGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCE T ss_conf 55689969998921999999999984899749999469977746 No 52 >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Probab=99.50 E-value=1.2e-13 Score=102.31 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=80.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC-CC------CCHH Q ss_conf 6776689879879999999999659908998358883211010001243542360234554135565-21------2404 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAG-TF------SDGK 178 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag-~f------sdgk 178 (549) |+.+|+|||||||||++|+.|+++|++|+||||.+....... .+...+++.+...+...|.. .+ .++. T Consensus 1 M~t~V~IVGaG~aGl~~A~~La~~G~~V~v~Er~~~~~~~~~-----~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 75 (394) T 1k0i_A 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGR-----IRAGVLEQGMVDLLREAGVDRRMARDGLVHEGV 75 (394) T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTC-----CCCCEECHHHHHHHHHTTCCHHHHHHCEEESCE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-----CEEEEECHHHHHHHHHCCCHHHHHHHCCCCCCE T ss_conf 999999999579999999999978999999946999876898-----579998989999999879928988507765417 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCE-EEEECCCCCCEECCCEEEEEE Q ss_conf 5532200021178999999966895100136764100012799999999999966988-998134332040587589999 Q T0604 179 LYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGE-IRFSTRVDDLHMEDGQITGVT 257 (549) Q Consensus 179 l~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~-i~~~t~V~~i~~~~g~v~gV~ 257 (549) .. .......... .. ......++ .......+.+.|++.+.+.++. +++.+.++.+...++.+.-.. T Consensus 76 ~~-~~~~~~~~~~--~~----------~~~~~~~~-~~~~~~~~~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~ 141 (394) T 1k0i_A 76 EI-AFAGQRRRID--LK----------RLSGGKTV-TVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTF 141 (394) T ss_dssp EE-EETTEEEEEC--HH----------HHHTSCCE-EECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEE T ss_pred EE-EECCCCCEEC--CC----------CCCCCCCC-EEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEE T ss_conf 99-9578750110--01----------24578862-14328899999999776427631122203555640352148999 Q ss_pred ECCC--CEEEECEEEEECCC Q ss_conf 8678--48970568993188 Q T0604 258 LSNG--EEIKSRHVVLAVGH 275 (549) Q Consensus 258 t~~g--~~i~ad~VVlAtGh 275 (549) ..+| .++.||.||.|+|. T Consensus 142 ~~~g~~~~~~adlvVgADG~ 161 (394) T 1k0i_A 142 ERDGERLRLDCDYIAGCDGF 161 (394) T ss_dssp EETTEEEEEECSEEEECCCT T ss_pred ECCCCEEEEEEEEEEECCCC T ss_conf 35995699984389967998 No 53 >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Probab=99.50 E-value=9.7e-13 Score=96.65 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=67.8 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 87767766898798799999999996599089983588832110100012435423602345541355652124045532 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQ 182 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~ 182 (549) ..+..++|+|||||||||+||+.|+++|++|+|||+.+.+|+... T Consensus 118 ~~~~~kkVAIIGaGPAGL~aA~~la~~G~~Vtv~E~~~~~GG~l~----------------------------------- 162 (456) T 2vdc_G 118 SRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV----------------------------------- 162 (456) T ss_dssp CSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH----------------------------------- T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEE----------------------------------- T ss_conf 666798899989788999999999964986999950575786688----------------------------------- Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCC-CEECCCEEEEEEECCC Q ss_conf 200021178999999966895100136764100012799999999999966988998134332-0405875899998678 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDD-LHMEDGQITGVTLSNG 261 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~-i~~~~g~v~gV~t~~g 261 (549) +|.|..-+ ...+++...+.+.++|+++++++.|.. +..++ T Consensus 163 -----------------~gIp~~rl-----------~~~vi~~~i~~i~~~Gv~~~~n~~vg~d~~~~~----------- 203 (456) T 2vdc_G 163 -----------------YGIPGFKL-----------EKSVVERRVKLLADAGVIYHPNFEVGRDASLPE----------- 203 (456) T ss_dssp -----------------HTSCTTTS-----------CHHHHHHHHHHHHHTTCEEETTCCBTTTBCHHH----------- T ss_pred -----------------ECCCCCCC-----------CHHHHHHHHHHHHHCCCEEECCCEEEEECCHHH----------- T ss_conf -----------------76788767-----------189999999999866939977767704340666----------- Q ss_pred CEEEECEEEEECCC Q ss_conf 48970568993188 Q T0604 262 EEIKSRHVVLAVGH 275 (549) Q Consensus 262 ~~i~ad~VVlAtGh 275 (549) .....|+|++|+|. T Consensus 204 l~~~~daV~la~Ga 217 (456) T 2vdc_G 204 LRRKHVAVLVATGV 217 (456) T ss_dssp HHSSCSEEEECCCC T ss_pred HHHCCCEEEEEECC T ss_conf 54047669995167 No 54 >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Probab=99.49 E-value=7.5e-13 Score=97.32 Aligned_cols=174 Identities=16% Similarity=0.082 Sum_probs=96.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-----C----HHHHH---HHHCCCCC--- Q ss_conf 766898798799999999996599089983588832110100012435423-----6----02345---54135565--- Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTL-----N----PESNV---QFGEGGAG--- 172 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~-----~----~~~n~---~~g~ggag--- 172 (549) -.|+|||||..|+.+|+.|+++|++|+||||++-..+-+....++...|.- + .++.. .... .++ T Consensus 19 ~Dv~IIGgGi~G~s~A~~La~~G~~V~LlEk~d~~~gtS~~ss~liHgG~rYl~~~~~~lv~e~l~er~~l~~-~ap~l~ 97 (561) T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYE-NAPHVT 97 (561) T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGGSSCCEECC---------------CHHHHHHHHH-HCTTTC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCHHHC T ss_conf 8789989679999999999968998899979967521446150466735421566999999999999999999-687760 Q ss_pred --------CCCCHHHHHHHHHHCC------------------CHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHH Q ss_conf --------2124045532200021------------------17899999996689510013676410001279999999 Q T0604 173 --------TFSDGKLYSQVKDPNF------------------YGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKM 226 (549) Q Consensus 173 --------~fsdgkl~t~~~~~~~------------------~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L 226 (549) .+..+.+......... ....+.+. ...-.+........|..+......++..+ T Consensus 98 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~l~~~~~~~~~~~~dg~~d~~~l~~~l 176 (561) T 3da1_A 98 TPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEK-EPLLRKENLKGGGIYVEYRTDDARLTLEI 176 (561) T ss_dssp EEEEEEEEECC---------------------------CEEECHHHHHHH-CTTSCCTTCCEEEEEEEEECCHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-CCCCCHHHEEEEEECCCCCCHHHHHHHHH T ss_conf 45752898526863889999868999998613126886301478887430-87667213368997046411077788999 Q ss_pred HHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC-----CCEEEECEEEEECCCCHHHHHHH Q ss_conf 9999966988998134332040587589999867-----84897056899318876799999 Q T0604 227 RATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN-----GEEIKSRHVVLAVGHSARDTFEM 283 (549) Q Consensus 227 ~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~-----g~~i~ad~VVlAtGhsard~~~~ 283 (549) ...+.+.|++++++++|+++..+++.+.++.+.+ ..++.|+.||.|+|-.+.+.-.| T Consensus 177 ~~~a~~~Ga~i~~~t~V~~i~~~~~~~~~~~~~~~~~g~~~~i~a~~VVNAaG~wad~i~~~ 238 (561) T 3da1_A 177 MKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREK 238 (561) T ss_dssp HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHT T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHEEECCCHHHHHHHHH T ss_conf 99998589976655157532112553101110201346322311114123144124423331 No 55 >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structural genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Probab=99.48 E-value=2.4e-13 Score=100.47 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=84.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC------CCCCCCCCHH Q ss_conf 776689879879999999999659--90899835888321101000124354236023455413------5565212404 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGE------GGAGTFSDGK 178 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~------ggag~fsdgk 178 (549) -+||+|||||||||.||..|.+.+ .+|+||||.+.+|+--..... .......+..+..... .+...+. .. T Consensus 6 ~k~VaIIGaGpsGL~aa~~Ll~~~~~~~v~vfE~~~~vGG~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~ 83 (447) T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTST-LSNKLPVPSTNPILTTEPIVGPAALPVYP-SP 83 (447) T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSC-CCSCCCSSBCCTTCCCCCBCCSSSCCBCC-CC T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC T ss_conf 99999989039999999999982999988999679997774014788-76456764445444556445655455566-76 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE Q ss_conf 55322000211789999999668951001367641000127999999999999669889981343320405875899998 Q T0604 179 LYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL 258 (549) Q Consensus 179 l~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t 258 (549) ++.... ....++.+ .|..+-.+.+ +...|+ ...+.+.|+.+++.+.-.|+|+|+|+++..+++++. |++ T Consensus 84 ~Y~~L~--tN~pk~~m-~fsd~p~p~~--~~~fp~-----~~~v~~YL~~ya~~l~~~I~~nt~V~~v~~~~~~w~-v~~ 152 (447) T 2gv8_A 84 LYRDLQ--TNTPIELM-GYCDQSFKPQ--TLQFPH-----RHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWV-VTY 152 (447) T ss_dssp CCTTCB--CSSCHHHH-SCTTCCCCTT--CCSSCB-----HHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEE-EEE T ss_pred CCCCEE--ECCCHHHH-CCCCCCCCCC--CCCCCC-----HHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEE-EEE T ss_conf 678715--78768874-4899888764--556899-----999999999999864236680039998770599168-999 Q ss_pred CC---CC---EEEECEEEEECCCC Q ss_conf 67---84---89705689931887 Q T0604 259 SN---GE---EIKSRHVVLAVGHS 276 (549) Q Consensus 259 ~~---g~---~i~ad~VVlAtGhs 276 (549) .+ +. +..+|+||+|+||- T Consensus 153 ~~~~~~~~~~~~~fd~VvvatG~~ 176 (447) T 2gv8_A 153 KGTKAGSPISKDIFDAVSICNGHY 176 (447) T ss_dssp EESSTTCCEEEEEESEEEECCCSS T ss_pred EEEECCCEEEEEEEEEEECCCCCC T ss_conf 862014407999998630455356 No 56 >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Probab=99.47 E-value=9.9e-14 Score=102.84 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=81.6 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) .....+|+||||||+||.+|+.|++.|++|+|+||.+..+ +.+.+++.+...+...|.+. T Consensus 89 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~----------ra~~l~~~sl~ild~~GL~~---------- 148 (497) T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS----------RHNVLHLWPFTIHDLRALGA---------- 148 (497) T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC----------CCCEEECCHHHHHHHHTTTH---------- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----------CEEEECHHHHHHHHHCCCCH---------- T ss_conf 7889908998978999999999997799889996789988----------63287828999999879922---------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCC---EEEEEEECC Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587---589999867 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDG---QITGVTLSN 260 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g---~v~gV~t~~ 260 (549) +. ....++.. .-.|+. ...+...|.+.+...|++|+++++|+++....+ .+. +++.+ T Consensus 149 --------~~--~~~~~~~~------~~~~i~---q~~le~~L~~~a~~~Gv~i~~g~~v~~l~~~~~~~~gv~-~~~~~ 208 (497) T 2bry_A 149 --------KK--FYGRFCTG------TLDHIS---IRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWR-AQLQP 208 (497) T ss_dssp --------HH--HCTTTTCT------TCCEEE---HHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBE-EEEES T ss_pred --------HH--HHCCCCCC------CCCCCC---HHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEE-EEEEE T ss_conf --------56--50757778------635489---999999999999867998982678999982267775249-99976 Q ss_pred C-----CEEEECEEEEECCC Q ss_conf 8-----48970568993188 Q T0604 261 G-----EEIKSRHVVLAVGH 275 (549) Q Consensus 261 g-----~~i~ad~VVlAtGh 275 (549) + .+++++.||.|+|. T Consensus 209 ~~~~~~~~~~a~~vvgaDG~ 228 (497) T 2bry_A 209 NPPAQLASYEFDVLISAAGG 228 (497) T ss_dssp CCCHHHHTCCBSEEEECCCT T ss_pred CCCCCEEEEEEEEECCCCCH T ss_conf 79995489976552144744 No 57 >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Probab=99.47 E-value=6.1e-13 Score=97.90 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=40.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 767766898798799999999996599089983588832110100 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) ....+|+|||||+|||+||+.|+++|++|+|||+.+.+|+|.... T Consensus 14 ~~~~dV~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~ 58 (478) T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH 58 (478) T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEE T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 999988998987899999999985899999990799886877899 No 58 >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Probab=99.47 E-value=1.7e-14 Score=107.59 Aligned_cols=176 Identities=19% Similarity=0.281 Sum_probs=86.7 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCC-HHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556-52124-04553 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGA-GTFSD-GKLYS 181 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gga-g~fsd-gkl~t 181 (549) .++...|+||||||+||++|+.|+++|++|+||||.+.+....+ ...+++.+...+...|. ..+.. +.... T Consensus 23 ~P~~~DVlIVGaGpaGL~lA~~La~~Gi~v~viEr~~~~~~~~r-------a~~l~~~tleiL~~lGl~~~l~~~~~~~~ 95 (549) T 2r0c_A 23 APIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPR-------VGTIGPRSMELFRRWGVAKQIRTAGWPGD 95 (549) T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCC-------CCEECHHHHHHHHHTTCHHHHHTSSCCTT T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------EEEECHHHHHHHHHCCCHHHHHHHCCCCC T ss_conf 99858989999188999999999978999999918999888984-------89989899999998789899985258765 Q ss_pred HHHHHCCC----HHHHHHHHHHCC-CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEE Q ss_conf 22000211----789999999668-9510013676410001279999999999996698899813433204058758999 Q T0604 182 QVKDPNFY----GRKVITEFVEAG-APEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGV 256 (549) Q Consensus 182 ~~~~~~~~----~~~vl~~~~~~G-a~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV 256 (549) ........ ...+.. + ..+ ..........+..........+..+.. +..+++|+++++|+++..+++.++.. T Consensus 96 ~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~q~~l~~~l~--~~~g~~v~~g~~v~~~~~~~~~v~v~ 171 (549) T 2r0c_A 96 HPLDAAWVTRVGGHEVYR-I-PLGTADTRATPEHTPEPDAICPQHWLAPLLA--EAVGERLRTRSRLDSFEQRDDHVRAT 171 (549) T ss_dssp SBCCEEEESSBTSCEEEE-E-CCCBTTTSCCCSSCSSCCEECCHHHHHHHHH--HHHGGGEECSEEEEEEEECSSCEEEE T ss_pred CCCEEEEEECCCCCEEEE-C-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HCCCCEEEECCEEEEEEEECCEEEEE T ss_conf 541257886158807884-2-4665443346544653345555999999998--50366799467999999835807999 Q ss_pred EE--CCC--CEEEECEEEEECCCCHHHHHHHHHHCCCCCCCC Q ss_conf 98--678--489705689931887679999999669711148 Q T0604 257 TL--SNG--EEIKSRHVVLAVGHSARDTFEMLHERGVYMEAK 294 (549) Q Consensus 257 ~t--~~g--~~i~ad~VVlAtGhsard~~~~l~~~Gi~~~~k 294 (549) .. .+| +++.++.||.|+|..+ +.+ +..|+.+... T Consensus 172 ~~~~~~g~~~~v~a~~vVGADG~~S--~VR--~~lgi~~~~~ 209 (549) T 2r0c_A 172 ITDLRTGATRAVHARYLVACDGASS--PTR--KALGIDAPPR 209 (549) T ss_dssp EEETTTCCEEEEEEEEEEECCCTTC--HHH--HHHTCCCCBS T ss_pred EEECCCCCEEEEEEEEEEECCCCCC--HHH--HHCCCCCCCC T ss_conf 9756999569999769996378865--889--9718764577 No 59 >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Probab=99.46 E-value=4.9e-12 Score=92.23 Aligned_cols=175 Identities=13% Similarity=0.031 Sum_probs=97.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-----CH----HHH---HHHHCCCCCC-- Q ss_conf 766898798799999999996599089983588832110100012435423-----60----234---5541355652-- Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTL-----NP----ESN---VQFGEGGAGT-- 173 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~-----~~----~~n---~~~g~ggag~-- 173 (549) -.|+|||||..|+.+|+.|+++|++|+||||++-..+.+....++..++.- +. ++. ..+. ..++. T Consensus 33 ~DvvIIGgGi~G~s~A~~La~~G~~V~LiEk~d~a~GtS~~ss~liHgGirYl~~~~~~l~~~~l~er~~l~-~~ap~l~ 111 (571) T 2rgh_A 33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQ-GIAPHIP 111 (571) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCSEECCCGGGGGGTCHHHHHHHHHHHHHHH-HHCTTSS T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHH T ss_conf 758998942999999999996899799996997855023502026686530245699999999999999999-9656763 Q ss_pred ---------CCCHHHHHHHHHHCCCHHHHHHHHHH---CCCCCCCCC------------------CCCCCEECCHHHHHH Q ss_conf ---------12404553220002117899999996---689510013------------------676410001279999 Q T0604 174 ---------FSDGKLYSQVKDPNFYGRKVITEFVE---AGAPEEILY------------------VSKPHIGTFKLVTMI 223 (549) Q Consensus 174 ---------fsdgkl~t~~~~~~~~~~~vl~~~~~---~Ga~~~i~~------------------~~kph~gtd~~~~vv 223 (549) +.++.............-...+.+.. .+.+..... ...+.-+......++ T Consensus 112 ~~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~~~~~d~~~d~~~l~ 191 (571) T 2rgh_A 112 KPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLDFRNNDARLV 191 (571) T ss_dssp EECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTTSCCTTEEEEEEECCEECCHHHHH T ss_pred HCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHCCCCCHHHCEEEEECCCCCCCHHHHH T ss_conf 10674487875687335302678868999999866446998501068889988588667667169997663355808899 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC-----CEEEECEEEEECCCCHHHHHHH Q ss_conf 99999999669889981343320405875899998678-----4897056899318876799999 Q T0604 224 EKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG-----EEIKSRHVVLAVGHSARDTFEM 283 (549) Q Consensus 224 ~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g-----~~i~ad~VVlAtGhsard~~~~ 283 (549) ..+...+.+.|+.+..+++|+++..+++++.++.+.+. .++.|+.||.|+|..+..+..| T Consensus 192 ~~~~~~a~~~G~~i~~~~~V~~~~~~~~~~~~~~~~d~~~~~~~~i~a~~VVnAaG~wad~i~~~ 256 (571) T 2rgh_A 192 IDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNL 256 (571) T ss_dssp HHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTT T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHH T ss_conf 99999999727454540468864115861443345541678348998106887341025678752 No 60 >2vq7_A Flavin-containing monooxygenase; NADP, drug metabolism NADP, oxidoreductase, drug metabolism; HET: FAD NAP EPE PGE PG4; 2.60A {Methylophaga SP} PDB: 2vqb_A* Probab=99.44 E-value=2.5e-13 Score=100.30 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=82.7 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC------CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCH Q ss_conf 776776689879879999999999659------90899835888321101000124354236023455413556521240 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMG------FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDG 177 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G------~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdg 177 (549) .+|.+||+|||||||||.+|..|++.| .+|+||||.+.+|+-.... +..+. +..... .-...+..- T Consensus 4 ~sm~krVaIIGAGpsGL~aa~~L~~~g~~~~~~~~v~vfE~~~~vGG~W~~~---~~~~~-~~~~~~----v~s~~Y~~l 75 (461) T 2vq7_A 4 GSMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT---WRTGL-DENGEP----VHSSMYRYL 75 (461) T ss_dssp ----CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCC---SCCSB-CTTSSB----CCCCCCTTC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC---CCCCC-CCCCCC----CCCCCCCCC T ss_conf 8899819998926999999999997283436899889995699977754136---78775-566665----545312343 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCC--EEEEECCCCCCEECCC-EEE Q ss_conf 4553220002117899999996689510013676410001279999999999996698--8998134332040587-589 Q T0604 178 KLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGG--EIRFSTRVDDLHMEDG-QIT 254 (549) Q Consensus 178 kl~t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~--~i~~~t~V~~i~~~~g-~v~ 254 (549) .+++ .+ +.. .|..+-.++........++ ....+.+.|+..+++.+. .++|+++|+.+...++ +.. T Consensus 76 ~~n~-pk-------~~~-~fsdfp~~~~~~~~~~~fp---~~~~v~~Yl~~ya~~f~L~~~i~~~t~V~~v~~~~~~~~w 143 (461) T 2vq7_A 76 WSNG-PK-------ECL-EFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTF 143 (461) T ss_dssp BCSS-CG-------GGS-CBTTBCHHHHHSSCCCSSC---BHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEE T ss_pred CCCC-CH-------HHH-CCCCCCCCHHCCCCCCCCC---CHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCEE T ss_conf 2277-25-------553-2789987221066655689---9999999999999872831057631089999851456546 Q ss_pred EEEECCC-----CEEEECEEEEECCCC Q ss_conf 9998678-----489705689931887 Q T0604 255 GVTLSNG-----EEIKSRHVVLAVGHS 276 (549) Q Consensus 255 gV~t~~g-----~~i~ad~VVlAtGhs 276 (549) .|.+.+. .+..+|+||+|+||. T Consensus 144 ~v~~~~~~~~~~~~~~fD~VVvAtG~~ 170 (461) T 2vq7_A 144 TVTVQDHTTDTIYSAAFDYVVCCTGHF 170 (461) T ss_dssp EEEEEETTTTEEEEEEESEEEECCCSS T ss_pred EEEEEECCCCCEEEEEEEEEEECCCCC T ss_conf 676642046604899956899896667 No 61 >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 Probab=99.44 E-value=1.2e-12 Score=96.02 Aligned_cols=129 Identities=21% Similarity=0.295 Sum_probs=86.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 776689879879999999999659908998358883211010001243542-----360234554135565212404553 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRT-----LNPESNVQFGEGGAGTFSDGKLYS 181 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~-----~~~~~n~~~g~ggag~fsdgkl~t 181 (549) .-+|+|||||+|||.+|..|.+.|++++||||++.+|+. |..+. +|..+. ...|+ T Consensus 16 ~~dV~IIGAG~sGl~~a~~l~~~g~~~~i~E~~~~vGGt-------W~~n~ypg~~~d~~s~-------~y~~s------ 75 (542) T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV-------WYWNRYPGARCDIESI-------EYCYS------ 75 (542) T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH-------HHHCCCTTCBCSSCTT-------TSSCC------ T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CCCCCCCCCCCCCCCC-------CCCCC------ T ss_conf 789999997399999999998779786999679997561-------5267889855366654-------30058------ Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCC--EEEEECCCCCCEECCC-EEEEEEE Q ss_conf 220002117899999996689510013676410001279999999999996698--8998134332040587-5899998 Q T0604 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGG--EIRFSTRVDDLHMEDG-QITGVTL 258 (549) Q Consensus 182 ~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~--~i~~~t~V~~i~~~~g-~v~gV~t 258 (549) +. ... +.....+ ..|+ ....+.+.|...+.+.+. .++|+++|+....+++ ...-|.+ T Consensus 76 ------~~-~~~---~~~~~~~-------~~~~---~~~ei~~Yl~~~a~~~~l~~~i~~~t~V~~~~~~~~~~~w~v~~ 135 (542) T 1w4x_A 76 ------FS-EEV---LQEWNWT-------ERYA---SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135 (542) T ss_dssp ------SC-HHH---HHHCCCC-------BSSC---BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE T ss_pred ------CC-CCC---CCCCCCC-------CCCC---CHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCEEEEC T ss_conf ------52-002---6789988-------7789---98999999999999809976568545999975116777348982 Q ss_pred CCCCEEEECEEEEECCC Q ss_conf 67848970568993188 Q T0604 259 SNGEEIKSRHVVLAVGH 275 (549) Q Consensus 259 ~~g~~i~ad~VVlAtGh 275 (549) .+|+++.|+.||+|+|+ T Consensus 136 ~~g~~~~a~~vi~a~G~ 152 (542) T 1w4x_A 136 NHGDRIRARYLIMASGQ 152 (542) T ss_dssp TTCCEEEEEEEEECCCS T ss_pred CCCCEEEEEEEEECCCC T ss_conf 68978999899734787 No 62 >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Probab=99.44 E-value=1.6e-12 Score=95.24 Aligned_cols=110 Identities=18% Similarity=0.386 Sum_probs=75.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) ..+|||||+|||||+||+.|++.|++|+|||+.+..+ ... ...+..+ | T Consensus 5 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~lie~~~~gg-~~~---------~~~~~~~----------~------------ 52 (320) T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG-QLT---------TTTEVEN----------W------------ 52 (320) T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG-GGG---------GCSBCCC----------S------------ T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC-EEE---------ECCCCCC----------C------------ T ss_conf 3559999987999999999997899889996048786-688---------3563046----------6------------ Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) ...+.. .....+...+.+.+++++++++.+ +|+.+..+++.++ |.++++ ++.+ T Consensus 53 ----------------------~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~-v~~~~~-~~~~ 105 (320) T 1trb_A 53 ----------------------PGDPND--LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFR-LNGDNG-EYTC 105 (320) T ss_dssp ----------------------TTCCSS--CBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEE-EEESSC-EEEE T ss_pred ----------------------CCCCCC--CCHHHHHHHHHHHHHHCCCEEEEE-EEEEEEECCCEEE-EEECCC-EEEC T ss_conf ----------------------777000--668999999999999849799972-7999990498599-997998-9989 Q ss_pred CEEEEECCC Q ss_conf 568993188 Q T0604 267 RHVVLAVGH 275 (549) Q Consensus 267 d~VVlAtGh 275 (549) |+||+|||. T Consensus 106 d~lIiAtGs 114 (320) T 1trb_A 106 DALIIATGA 114 (320) T ss_dssp EEEEECCCE T ss_pred CEEEEEECC T ss_conf 999999898 No 63 >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavoprotein, 3D-structure, oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Probab=99.43 E-value=1.1e-12 Score=96.29 Aligned_cols=48 Identities=31% Similarity=0.506 Sum_probs=40.8 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCCCC Q ss_conf 877677668987987999999999965990899835-888321101000 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVER-GKEVRERTKDTF 150 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlEr-g~~vg~r~~~~~ 150 (549) |...+++|||||||+|||.||+.|+++|++|+|||+ .+.+|+|..... T Consensus 40 ~~~~~kkV~IIGaGiaGLsaA~~L~~~G~~V~VlEA~s~r~GGr~~T~~ 88 (376) T 2e1m_A 40 PPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFH 88 (376) T ss_dssp SCCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEEC T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEE T ss_conf 9999986999897889999999998689908999678987510489987 No 64 >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Probab=99.43 E-value=3.2e-12 Score=93.41 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=89.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 767766898798799999999996-5990899835888321101000124354236023455413556521240455322 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) .+...|||||||||||+||+.|++ .|++|+|||+++.+|++...... .....+ + T Consensus 37 ~~e~DVvVIGaGpAGL~aA~~La~~aG~~V~VlE~~~~~GG~~~~~g~-~~~~~~--------------------~---- 91 (284) T 1rp0_A 37 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQ-LFSAMI--------------------V---- 91 (284) T ss_dssp HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCST-TCCCEE--------------------E---- T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCE-ECCHHH--------------------H---- T ss_conf 468998998977899999999987489759998257889861581787-278899--------------------7---- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC---- Q ss_conf 0002117899999996689510013676410001279999999999996698899813433204058758999986---- Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS---- 259 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~---- 259 (549) +. .. ...+.+++........ ..........+...+.+.+...+.++...+.+..+..+++++.++... T Consensus 92 -~~--~~---~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 163 (284) T 1rp0_A 92 -RK--PA---HLFLDEIGVAYDEQDT--YVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALV 163 (284) T ss_dssp -ET--TT---HHHHHHHTCCCEECSS--EEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHH T ss_pred -HH--HH---HHHHHHHCCEEECCCC--CCEECCCHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCEEEEEEECHHHH T ss_conf -66--67---8889971971302675--5312231999999999999866977953653101320598576899141001 Q ss_pred ----------CCCEEEECEEEEECCCCHHH Q ss_conf ----------78489705689931887679 Q T0604 260 ----------NGEEIKSRHVVLAVGHSARD 279 (549) Q Consensus 260 ----------~g~~i~ad~VVlAtGhsard 279 (549) ++..+.++.+|.++|+.+.. T Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~~G~~a~~ 193 (284) T 1rp0_A 164 AQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 193 (284) T ss_dssp HTCTTTSSCCCCEEEEEEEEEECCCSSSTT T ss_pred HHHCCCCCCCCCCCCCCCEEEECCCCCCCH T ss_conf 031244224797011786699898863310 No 65 >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Probab=99.43 E-value=1.9e-12 Score=94.76 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=93.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-C---------HHHHHHHHC--------C Q ss_conf 766898798799999999996599089983588832110100012435423-6---------023455413--------5 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTL-N---------PESNVQFGE--------G 169 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~-~---------~~~n~~~g~--------g 169 (549) -.|||||||.+|+++|+.|+++|.+|+||||+....+.+....++...... . ..+...+-+ . T Consensus 18 ~DvvIIGaGi~G~s~A~~La~~G~~V~liE~~~~~~gaS~~s~G~l~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 97 (382) T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALS 97 (382) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHHHHH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 89999994299999999999889958999599998745466343407587778644999999998877887654102232 Q ss_pred CC-CCCC-CHHHHHHHHHHCCCHHHHHHHHHH------------------CCCC-CCC-CCCCCCCEECCHHHHHHHHHH Q ss_conf 56-5212-404553220002117899999996------------------6895-100-136764100012799999999 Q T0604 170 GA-GTFS-DGKLYSQVKDPNFYGRKVITEFVE------------------AGAP-EEI-LYVSKPHIGTFKLVTMIEKMR 227 (549) Q Consensus 170 ga-g~fs-dgkl~t~~~~~~~~~~~vl~~~~~------------------~Ga~-~~i-~~~~kph~gtd~~~~vv~~L~ 227 (549) +. -.+. .|.+.... .......+.. .... .+. ...-.|..+......++..|. T Consensus 98 g~~~~~~~~g~l~~a~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~v~~~~~~~~l~ 171 (382) T 1ryi_A 98 GVDIRQHNGGMFKLAF------SEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYV 171 (382) T ss_dssp CCCCCCBCCCEEEEES------SHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCC------CCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC T ss_conf 3222223432110111------1122233210000122113550124430876677740389985034311101122210 Q ss_pred HHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHHHH Q ss_conf 99996698899813433204058758999986784897056899318876799999 Q T0604 228 ATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEM 283 (549) Q Consensus 228 ~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~~~ 283 (549) +.+...|++++.++.+..+..+++. ..+.+.+| ++.|+.||+|+|..+++.+.+ T Consensus 172 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~t~~g-~i~a~~vV~a~G~~~~~l~~~ 225 (382) T 1ryi_A 172 KAAKMLGAEIFEHTPVLHVERDGEA-LFIKTPSG-DVWANHVVVASGVWSGMFFKQ 225 (382) T ss_dssp HHHHHTTCEEETTCCCCEEECSSSS-EEEEETTE-EEEEEEEEECCGGGTHHHHHH T ss_pred HHHHHHHCEEEECCCCCCCCCCCCC-CEECCCCC-EEECCEEEEECCCCCCCCCCC T ss_conf 2555420103200111011345531-00012474-185133898148644200001 No 66 >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Probab=99.43 E-value=2.5e-12 Score=94.07 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=45.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCEE--CCCEEEEEEECCCCEEEECEEEEEC Q ss_conf 99999999999966988998134332040--5875899998678489705689931 Q T0604 220 VTMIEKMRATIIELGGEIRFSTRVDDLHM--EDGQITGVTLSNGEEIKSRHVVLAV 273 (549) Q Consensus 220 ~~vv~~L~~~l~~~G~~i~~~t~V~~i~~--~~g~v~gV~t~~g~~i~ad~VVlAt 273 (549) ..+.++|.+.++..|+++++++.|++|.. ++++++||.+ +|+++.|+.||... T Consensus 242 ~~l~qal~r~~~~~Gg~i~ln~~V~~I~~~~e~~~~~gV~~-~g~~i~a~~vI~~~ 296 (453) T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADP 296 (453) T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECG T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEE-CCEEEECCEEEECH T ss_conf 89999999999970999995994459999578987999997-99999939899894 No 67 >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Probab=99.42 E-value=5.8e-12 Score=91.74 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=48.5 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHH Q ss_conf 799999999999966988998134332040587589999867848970568993188767 Q T0604 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsar 278 (549) ...+...+.+.+++.|++++++++|+.+..+++.+..+++.+|++++||.||.|+|.... T Consensus 183 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~~~~dG~~i~~D~vi~a~G~~pn 242 (404) T 3fg2_P 183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPN 242 (404) T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEEC T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEECEEEEEECCCCC T ss_conf 467777788988715968971644899994399799999679989984889996175158 No 68 >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Probab=99.42 E-value=6.5e-12 Score=91.47 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=45.8 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 799999999999966988998134332040587589999867848970568993188 Q T0604 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) ...+.+.+.+.+++.|++++++++|+.+...++.+. +++.+|+++++|.||+|+|. T Consensus 190 ~~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~ 245 (452) T 2cdu_A 190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEII-TKTLDGKEIKSDIAILCIGF 245 (452) T ss_dssp CHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEE-EEETTSCEEEESEEEECCCE T ss_pred CCCCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCC-CCCCCCCEECCCEEEEEEEE T ss_conf 422110122221202466325764220102322111-22332212302136876631 No 69 >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Probab=99.40 E-value=4.9e-12 Score=92.25 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=77.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 7766898798799999999996599-089983588832110100012435423602345541355652124045532200 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) +-+|+|||||||||.||+.|+++|+ +|+|+||.+.+......+ .+.+.........| .+ + .+...... T Consensus 4 p~dV~IVGaGpaGl~~A~~L~~~G~~~V~v~Er~~~~~~~g~gi-------~l~p~~~~~L~~lG--l~-~-~l~~~~~~ 72 (410) T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI-------NIQPAAVEALAELG--LG-P-ALAATAIP 72 (410) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEE-------EECHHHHHHHHHTT--CH-H-HHHHHSEE T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEE-------EECHHHHHHHHHCC--CH-H-HHHHHCCC T ss_conf 98799999688999999999858998689996699888787699-------98989999999879--93-8-99840778 Q ss_pred HCCCHHHHHHHHHHCCCCC----CCCCCCCCCEECC-HHHHHHHHHHHHHHH--CCCEEEEECCCCCCEECCCEEEEEEE Q ss_conf 0211789999999668951----0013676410001-279999999999996--69889981343320405875899998 Q T0604 186 PNFYGRKVITEFVEAGAPE----EILYVSKPHIGTF-KLVTMIEKMRATIIE--LGGEIRFSTRVDDLHMEDGQITGVTL 258 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~----~i~~~~kph~gtd-~~~~vv~~L~~~l~~--~G~~i~~~t~V~~i~~~~g~v~gV~t 258 (549) .. ... ++...|... .......++.+.. ....+...+.+.+.. .+..++++++|+++..+.+.+... + T Consensus 73 ~~-~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~i~~~~~v~~v~~~~~~v~~~-~ 146 (410) T 3c96_A 73 TH-ELR----YIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIG-A 146 (410) T ss_dssp EC-EEE----EECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEE-E T ss_pred CC-EEE----EEECCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCEEEEE-E T ss_conf 50-389----99589988983145422356886056549999999875443037852899456278999518816898-5 Q ss_pred CCC----CEEEECEEEEECCCC Q ss_conf 678----489705689931887 Q T0604 259 SNG----EEIKSRHVVLAVGHS 276 (549) Q Consensus 259 ~~g----~~i~ad~VVlAtGhs 276 (549) .++ +++.+|.||.|+|.. T Consensus 147 ~~~~~~~~~i~ad~vI~AdG~~ 168 (410) T 3c96_A 147 RDGHGKPQALGADVLVGADGIH 168 (410) T ss_dssp EETTSCEEEEEESEEEECCCTT T ss_pred ECCCCCCEEEEECEEEECCCCC T ss_conf 0586442588516898616753 No 70 >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* Probab=99.38 E-value=1e-11 Score=90.27 Aligned_cols=35 Identities=43% Similarity=0.645 Sum_probs=31.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 668987987999999999965990899835888321 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .|||||+||||+.||..|++.|++|+|+||++ +|+ T Consensus 8 DvvIIG~G~AG~~aA~~~~~~g~~V~liEk~~-~GG 42 (464) T 2eq6_A 8 DLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGG 42 (464) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTH T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC T ss_conf 99999878899999999985989399996799-797 No 71 >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* Probab=99.37 E-value=1.5e-11 Score=89.10 Aligned_cols=41 Identities=29% Similarity=0.562 Sum_probs=36.6 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 77677668987987999999999965990899835888321 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) +++.-.|||||+||||+.||..|++.|.+|+|+|+.+.+|+ T Consensus 3 ~~~~yDvvIIGaG~aG~~aA~~aa~~g~kV~lIE~~~~~GG 43 (474) T 1zmd_A 3 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG 43 (474) T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSH T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 98624889989888999999999868897899982799654 No 72 >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Probab=99.37 E-value=5.5e-11 Score=85.62 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=39.0 Q ss_pred ECCCCCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2048874302689854201235-3357899999999999999999999752 Q T0604 497 IKRGKDFQSVNLKGFYPAGEGA-GYAGGILSAGIDGIKVAEAVARDIVAAM 546 (549) Q Consensus 497 i~r~~tleS~~i~GLY~~GEga-GyagGI~saa~~G~~~a~~i~~~~~~~~ 546 (549) |..|+++|| +++|+|.||+.+ |...-+.+|.-+|..||.+|..++++++ T Consensus 270 i~vd~~~~T-s~~giyaaGD~~~~~~~~~~~A~~~G~~Aa~~i~~~~~~~~ 319 (319) T 3cty_A 270 IVVDSRQRT-SVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSISKK 319 (319) T ss_dssp BCCCTTCBC-SSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHTC-- T ss_pred EEECCCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 853979722-89999999976889614999999999999999998876079 No 73 >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Probab=99.36 E-value=4.2e-11 Score=86.35 Aligned_cols=175 Identities=14% Similarity=0.017 Sum_probs=97.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH---------HH---HHHHCCCCCCCC Q ss_conf 766898798799999999996599089983588832110100012435423602---------34---554135565212 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPE---------SN---VQFGEGGAGTFS 175 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~---------~n---~~~g~ggag~fs 175 (549) -.|+|||||..|+.+|+.|+++|++|+||||++-..+.+....++..++.-..+ +- ..+.+ .++.+. T Consensus 4 ~DV~IIG~Gi~G~~~A~~la~rG~~V~lvEk~d~a~GaS~~ss~lihgG~rYl~~~~~~l~~e~~~er~~l~~-~ap~l~ 82 (501) T 2qcu_A 4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLK-MAPHIA 82 (501) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHH-HCTTTE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCHHHE T ss_conf 8999989679999999999978998999979967471435403263745322676889999999999999999-681341 Q ss_pred --CHHHHHHHHH-HCCCHHHHHHHHHHCCCCCCCCCC-------------------CCCCEECCHHHHHHHHHHHHHHHC Q ss_conf --4045532200-021178999999966895100136-------------------764100012799999999999966 Q T0604 176 --DGKLYSQVKD-PNFYGRKVITEFVEAGAPEEILYV-------------------SKPHIGTFKLVTMIEKMRATIIEL 233 (549) Q Consensus 176 --dgkl~t~~~~-~~~~~~~vl~~~~~~Ga~~~i~~~-------------------~kph~gtd~~~~vv~~L~~~l~~~ 233 (549) -+.+...... ...............+........ -.+.-+......+...+...+.+. T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~a~~~ 162 (501) T 2qcu_A 83 FPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRK 162 (501) T ss_dssp EEEEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHHHT T ss_pred EECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHCEEEEECCEEECCHHHHHHHHHHHHHC T ss_conf 30644999528420899999999998735885446624666640433466655167970687980368899999999862 Q ss_pred CCEEEEECCCCCCEECCCEEEEEEECC-----CCEEEECEEEEECCCCHHHHHHHH Q ss_conf 988998134332040587589999867-----848970568993188767999999 Q T0604 234 GGEIRFSTRVDDLHMEDGQITGVTLSN-----GEEIKSRHVVLAVGHSARDTFEML 284 (549) Q Consensus 234 G~~i~~~t~V~~i~~~~g~v~gV~t~~-----g~~i~ad~VVlAtGhsard~~~~l 284 (549) |+++..++.|+.+..+++.. +|.+.+ ..++.|+.||.|+|..+.+...++ T Consensus 163 g~~~~~~~~V~~i~~~~~~~-~v~~~~~~~~~~~~i~a~~vVnaaG~wa~~~~~~~ 217 (501) T 2qcu_A 163 GGEVLTRTRATSARRENGLW-IVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDG 217 (501) T ss_dssp TCEEECSEEEEEEEEETTEE-EEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHH T ss_pred CCCCCCCEEEEEEEEECCEE-EEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHH T ss_conf 64233220589999864616-99987416895787650048966870178776533 No 74 >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Probab=99.36 E-value=1.5e-11 Score=89.09 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=93.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCC--CCCCCCCCCC-------------CHHHHHH--HH Q ss_conf 67766898798799999999996599-08998358883211010--0012435423-------------6023455--41 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKD--TFGFWRKRTL-------------NPESNVQ--FG 167 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~vg~r~~~--~~~~~~~~~~-------------~~~~n~~--~g 167 (549) ...+|||||||.+||.+|+.|+++|. +|+||||.....+.... ..++.+.... ..++... .. T Consensus 5 ~~~~IvIIGaGi~GlstA~~La~~G~~~V~vlE~~~~~~g~sas~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (438) T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWKND 84 (438) T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 98998998944999999999996799988998499998774547786763156432355420789999999999999853 Q ss_pred CCCCCCCCC-HHHHHHHHHHCCCHHHHHHHHHH----CCCC-----CC-----------------CCCCCCCCEECCHHH Q ss_conf 355652124-04553220002117899999996----6895-----10-----------------013676410001279 Q T0604 168 EGGAGTFSD-GKLYSQVKDPNFYGRKVITEFVE----AGAP-----EE-----------------ILYVSKPHIGTFKLV 220 (549) Q Consensus 168 ~ggag~fsd-gkl~t~~~~~~~~~~~vl~~~~~----~Ga~-----~~-----------------i~~~~kph~gtd~~~ 220 (549) ......|.. |.+.....+.. ...++.... .+.. .+ .-....+..+..... T Consensus 85 ~~~~~~~~~~G~~~~a~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~g~~~~~ 161 (438) T 3dje_A 85 PLFKPYYHDTGLLMSACSQEG---LDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHAR 161 (438) T ss_dssp TTTGGGEECCCEEEEECSHHH---HHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEECHH T ss_pred HCCCCCEEECCEEEEECCHHH---HHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEECHH T ss_conf 176761774157998425668---99999999998607954540366666537411245554452589984888266289 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCE---ECCCEEEEEEECCCCEEEECEEEEECCCCH Q ss_conf 999999999996698899813433204---058758999986784897056899318876 Q T0604 221 TMIEKMRATIIELGGEIRFSTRVDDLH---MEDGQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549) Q Consensus 221 ~vv~~L~~~l~~~G~~i~~~t~V~~i~---~~~g~v~gV~t~~g~~i~ad~VVlAtGhsa 277 (549) .+...+.+.+.+.|+++++.+.|+.+. ..++....+.+.++..+.++.||+|+|..+ T Consensus 162 ~~~~~l~~~a~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~g~~s 221 (438) T 3dje_A 162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438) T ss_dssp HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCHHH T ss_conf 999999998763472599987666788520234214554214664334562999255666 No 75 >3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Probab=99.36 E-value=1.8e-11 Score=88.75 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=39.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCC Q ss_conf 677668987987999999999965--99089983588832110100 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~--G~~V~VlErg~~vg~r~~~~ 149 (549) .++||||||||+|||.||+.|+++ |++|+|||+.+.+|+|.... T Consensus 3 ~~kkV~IIGaGiaGL~aA~~L~~~~~G~~V~vlEa~~~~GGr~~t~ 48 (475) T 3lov_A 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATY 48 (475) T ss_dssp CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEE T ss_conf 8992999898889999999998469889889992799885767799 No 76 >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Probab=99.36 E-value=3.1e-12 Score=93.45 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=31.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 668987987999999999965990899835888321 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .|||||+|||||.||+.|++.|++|+|+|++ .+|+ T Consensus 6 DviIIG~GpAGlsaA~~a~~~g~~v~viEk~-~~GG 40 (450) T 1ges_A 6 DYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGG 40 (450) T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTH T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCC T ss_conf 8999887889999999999788929999479-9786 No 77 >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Probab=99.34 E-value=3.3e-12 Score=93.32 Aligned_cols=138 Identities=20% Similarity=0.170 Sum_probs=74.9 Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 668987987999999999965--990899835888321101000124354236023455413556521240455322000 Q T0604 109 RPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~--G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) ||+|||||||||.+|+.|+++ |++|+||||.+........+. +........... . + +.+.......... T Consensus 2 rV~IVGaGpaGl~~A~~La~~~~G~~V~V~Er~~~~~~~g~gi~-l~~~~~~~~~~~----~---~-~~~~~~~~~~~~~ 72 (381) T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVV-LPGRPGQHPANP----L---S-YLDAPERLNPQFL 72 (381) T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEE-EESCTTTCTTCG----G---G-GSSCGGGGCCEEE T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEE-ECCHHHHHHHHH----C---C-CHHHHHHHCCCEE T ss_conf 36999908899999999995599996899907999887652687-471799999850----6---6-3466876344401 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) ... . ....+. ........++. ......+.+.|++++.+.|+++++++.++++ .++.++.+ T Consensus 73 ~~~--~----~~~~~~-~~~~~~~~~~~-~i~r~~l~~~L~~~a~~~gv~i~~~~~~~~~------------~~~~~~~a 132 (381) T 3c4a_A 73 EDF--K----LVHHNE-PSLMSTGVLLC-GVERRGLVHALRDKCRSQGIAIRFESPLLEH------------GELPLADY 132 (381) T ss_dssp CCE--E----EEESSS-EEECCCCSCEE-EEEHHHHHHHHHHHHHHTTCEEETTCCCCSG------------GGCCGGGC T ss_pred CCE--E----EECCCC-CCCCCCCCCEE-EECHHHHHHHHHHHHHHCCCCEEECCEEEEE------------CCCCEEEE T ss_conf 121--3----421687-33335787545-7535779999999998669713102203662------------47860368 Q ss_pred CEEEEECCC Q ss_conf 568993188 Q T0604 267 RHVVLAVGH 275 (549) Q Consensus 267 d~VVlAtGh 275 (549) |.||.|+|- T Consensus 133 dlvVgADG~ 141 (381) T 3c4a_A 133 DLVVLANGV 141 (381) T ss_dssp SEEEECCGG T ss_pred EEEEEECCC T ss_conf 999951788 No 78 >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Probab=99.34 E-value=1.5e-11 Score=89.21 Aligned_cols=109 Identities=19% Similarity=0.316 Sum_probs=75.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 66898798799999999996599089983588832110100012435423602345541355652124045532200021 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPNF 188 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~~ 188 (549) .|||||||||||.||+.|++.|++|+|+|+. .+++...+ . + ...+ T Consensus 3 DvvIIGgG~AGl~aA~~l~~~g~~v~li~~~--~gg~~~~~---------~--~----------------------~~~~ 47 (310) T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDT---------V--D----------------------IENY 47 (310) T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGC---------C--E----------------------ECCB T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEC--CCCEEEEC---------C--C----------------------CCCC T ss_conf 5999998799999999999789988999807--88578834---------6--7----------------------5874 Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE--CCCEEEEEEECCCCEEEE Q ss_conf 178999999966895100136764100012799999999999966988998134332040--587589999867848970 Q T0604 189 YGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM--EDGQITGVTLSNGEEIKS 266 (549) Q Consensus 189 ~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~--~~g~v~gV~t~~g~~i~a 266 (549) ...+ ......+.+.+...+...+..+.+...+..+.. .+.....|.+.+|+.+.+ T Consensus 48 --------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~g~~~~~ 104 (310) T 1fl2_A 48 --------------------ISVP---KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKA 104 (310) T ss_dssp --------------------TTBS---SEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEE T ss_pred --------------------CCCC---CCCHHHHHHHHHHHHHHHHHEEECCEEEEEEEEEEECCCEEEEEECCCCEEEC T ss_conf --------------------7775---46899999999998886521022237999998877318718999899819981 Q ss_pred CEEEEECCC Q ss_conf 568993188 Q T0604 267 RHVVLAVGH 275 (549) Q Consensus 267 d~VVlAtGh 275 (549) |+||+|||. T Consensus 105 ~~lvlAtG~ 113 (310) T 1fl2_A 105 RSIIVATGA 113 (310) T ss_dssp EEEEECCCE T ss_pred CEEEECCCC T ss_conf 868887799 No 79 >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=99.34 E-value=3.4e-11 Score=86.94 Aligned_cols=34 Identities=38% Similarity=0.654 Sum_probs=31.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7766898798799999999996599089983588 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .-.|||||||||||+||+.|++.|++|+|+||++ T Consensus 3 ~~DViIIGaGpAGlsaA~~l~~~g~~v~viEk~~ 36 (455) T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (455) T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 4798999978899999999996899799995799 No 80 >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green chemistry, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* Probab=99.33 E-value=2.2e-11 Score=88.16 Aligned_cols=134 Identities=24% Similarity=0.326 Sum_probs=87.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 7766898798799999999996-599089983588832110100012435423602345541355652124045532200 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) .-.|+|||||++||.+|..|.+ .|++++|||+++.+|+- |..+. + .+...-+...++..+ T Consensus 8 ~~dV~IIGAG~sGl~~a~~l~~~~~~~~~i~E~~~~vGGt-------W~~nr---------Y-pg~~~d~~~~~y~~s-- 68 (540) T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGT-------WYWNR---------Y-PGALSDTESHLYRFS-- 68 (540) T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTH-------HHHCC---------C-TTCEEEEEGGGSSCC-- T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CCCCC---------C-CCCEECCCCCCCCCC-- T ss_conf 0899998953999999999987089897999769997277-------74788---------9-983255665243068-- Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCC--EEEEECCCCCCEECCC-EEEEEEECCCC Q ss_conf 02117899999996689510013676410001279999999999996698--8998134332040587-58999986784 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGG--EIRFSTRVDDLHMEDG-QITGVTLSNGE 262 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~--~i~~~t~V~~i~~~~g-~v~gV~t~~g~ 262 (549) +. .. .+.... + ...|+ ....+.+.|...+++.+. .|+|+++|+++..+++ ...-+.+.+++ T Consensus 69 --~~-~~---~~~~~~------~-~~~~~---~~~ei~~Yl~~~a~~~~l~~~i~~~t~V~~~~~~~~~~~~~~~~~~~~ 132 (540) T 3gwf_A 69 --FD-RD---LLQEST------W-KTTYI---TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE 132 (540) T ss_dssp --SC-HH---HHHHCC------C-SBSEE---EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC T ss_pred --CC-CC---CCCCCC------C-CCCCC---CHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEECCCCCCEEEEEECCC T ss_conf --77-45---477899------9-88899---989999999999999599561773327999862355462123430574 Q ss_pred EEEECEEEEECCC Q ss_conf 8970568993188 Q T0604 263 EIKSRHVVLAVGH 275 (549) Q Consensus 263 ~i~ad~VVlAtGh 275 (549) ++.|+.||.|+|+ T Consensus 133 ~~~~~~~i~a~G~ 145 (540) T 3gwf_A 133 VYRAKYVVNAVGL 145 (540) T ss_dssp EEEEEEEEECCCS T ss_pred EEEEEEEEEEEEC T ss_conf 2554210045410 No 81 >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Probab=99.32 E-value=2.4e-11 Score=87.92 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=74.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 67766898798799999999996599089983588832110100012435423602345541355652124045532200 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) ....|+|||||||||.||+.|++.|++|+|+|.. +|+.... ..+-+ .+ T Consensus 211 ~~yDVvIIGgGpAGlsAA~~lar~G~~V~liee~--~GG~~~~-----------~~~i~--------n~----------- 258 (521) T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLD-----------TVDIE--------NY----------- 258 (521) T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGTT-----------CSCBC--------CB----------- T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEC--CCCEEEE-----------CCCCC--------CC----------- T ss_conf 9885899967899999999999789988999816--8866764-----------27728--------74----------- Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE--CCCEEEEEEECCCCE Q ss_conf 021178999999966895100136764100012799999999999966988998134332040--587589999867848 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM--EDGQITGVTLSNGEE 263 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~--~~g~v~gV~t~~g~~ 263 (549) ...+. .........+...+...++++.....+..... .++....|.+.+|+. T Consensus 259 -----------------------~~~~~---~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~ 312 (521) T 1hyu_A 259 -----------------------ISVPK---TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAV 312 (521) T ss_dssp -----------------------TTBSS---BCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCE T ss_pred -----------------------CCCCH---HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEECCCCEEEEECCCCE T ss_conf -----------------------55531---2457899999988875363156212200235675128816999899859 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +.++++|+|||. T Consensus 313 i~a~~lIIATGa 324 (521) T 1hyu_A 313 LKARSIIIATGA 324 (521) T ss_dssp EEEEEEEECCCE T ss_pred EEEEEEEECCCC T ss_conf 994147772556 No 82 >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Probab=99.32 E-value=6.9e-11 Score=85.03 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=47.2 Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 12799999999999966988998134332040587589999867848970568993188 Q T0604 217 FKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 217 d~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) .....+.+.|++.+.+.|+++...+.+.-...+++.+..+.+.++..+.+|.+|-|+|. T Consensus 170 ~da~~f~~~L~~~a~~~GV~~i~~~~~~~~~~~~~~~~~~~l~~~~~i~ad~~iDcsG~ 228 (511) T 2weu_A 170 FDADEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGF 228 (511) T ss_dssp ECHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGG T ss_pred ECHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCEEEEEECCCEEEEEEEEEECCCC T ss_conf 55377778887510046858994442003314678568765046606742345512554 No 83 >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Probab=99.32 E-value=7.7e-11 Score=84.72 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=33.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 668987987999999999965990899835888321 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .|||||||||||.||+.|++.|++|+|+|+.+.+|+ T Consensus 4 DvvIIGgGpAGl~AA~~la~~G~~V~liE~~~~~GG 39 (468) T 2qae_A 4 DVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGG 39 (468) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 499999888999999999978997899964899775 No 84 >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Probab=99.31 E-value=3.3e-11 Score=87.07 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.9 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 66898798799999999996599089983588 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .||||||||||+.||..|++.|++|+|+|++. T Consensus 6 DvvIIG~G~AG~~aA~~l~~~g~~V~lie~~~ 37 (463) T 2r9z_A 6 DLIAIGGGSGGLAVAEKAAAFGKRVALIESKA 37 (463) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 79999888899999999996889199993699 No 85 >3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} Probab=99.31 E-value=3.8e-12 Score=92.90 Aligned_cols=107 Identities=19% Similarity=0.300 Sum_probs=64.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 67766898798799999999996599--0899835888321101000124354236023455413556521240455322 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) |+.+|||||+|||||.||..|++.|. +|+|+|+.+... +.++. ++. T Consensus 1 M~t~VvIIGgG~AGl~aA~~Lr~~g~~~~Itli~~e~~~~--------y~r~~-----------------ls~------- 48 (410) T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP--------YDRPS-----------------LSK------- 48 (410) T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS--------BCSGG-----------------GGT------- T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--------CCCCC-----------------CHH------- T ss_conf 9999899898899999999998269888099995888766--------76775-----------------428------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) .++. +.......... .+...+.+++++.+++|+.|..++.. |.+.++++ T Consensus 49 --------~~~~-----~~~~~~~~~~~---------------~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~ 97 (410) T 3ef6_A 49 --------AVLD-----GSLERPPILAE---------------ADWYGEARIDMLTGPEVTALDVQTRT---ISLDDGTT 97 (410) T ss_dssp --------HHHH-----TSSSSCCBSSC---------------TTHHHHTTCEEEESCCEEEEETTTTE---EEETTSCE T ss_pred --------HHCC-----CCCCHHHHHHH---------------HHHHHHCCCEEEECCEEEEEECCCCE---EEECCCCE T ss_conf --------8748-----86416666532---------------99999769799989989999679748---99789819 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +.+|++|+|||. T Consensus 98 ~~yd~LVlAtG~ 109 (410) T 3ef6_A 98 LSADAIVIATGS 109 (410) T ss_dssp EECSEEEECCCE T ss_pred EEECEEEECCCC T ss_conf 981799998667 No 86 >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Probab=99.31 E-value=2.2e-11 Score=88.17 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=30.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 766898798799999999996599089983588 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) -.|||||+|||||.||+.|+++|++|+||||+. T Consensus 5 yDVvIIGaGpAGl~AA~~~~~~G~~V~viEk~~ 37 (467) T 1zk7_A 5 VQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT 37 (467) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 629998888899999999985939499995798 No 87 >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} Probab=99.30 E-value=2.7e-11 Score=87.62 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=31.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCC Q ss_conf 776689879879999999999659--908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~v 142 (549) .++||||||||||+.||+.|++.| .+|+|||+++.. T Consensus 3 MkkVvIIGgG~aGl~aA~~l~~~g~~~~Vtlie~~~~~ 40 (472) T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI 40 (472) T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--- T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCC T ss_conf 79899999889999999999717989819999489975 No 88 >2pyx_A Tryptophan halogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina ncimb 400} Probab=99.29 E-value=1.5e-10 Score=82.82 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=50.3 Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECC-CEEEEEEECCCCEEEECEEEEECCC Q ss_conf 1279999999999996698899813433204058-7589999867848970568993188 Q T0604 217 FKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 217 d~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~-g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) .....+.+.|++.+.+.|+..+.+.+|+++..++ |.+..+.+.+|.++++|.+|-|+|- T Consensus 172 ~Da~~f~~~L~~~a~~~g~v~~~~~~V~~v~~~~~G~i~~l~~~~g~~i~aDffIDCSGf 231 (526) T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGA 231 (526) T ss_dssp ECHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGG T ss_pred ECHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEECCCCEEEECEEEECCCC T ss_conf 449999999999987518535873034343037888524797078848960579875664 No 89 >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Probab=99.29 E-value=8.7e-11 Score=84.40 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=60.2 Q ss_pred HHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 99966895100136764100012799999999999966988998134332040587589999867848970568993188 Q T0604 196 EFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 196 ~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) .+...|....+... .+++....-+.+.+.+.+.+++.|++++++++|+.+...... +.+.+|++++||.|++|+|. T Consensus 205 ~l~~~g~~vtlve~-~~~~l~~~d~~~~~~l~~~L~~~GV~v~~~~~V~~ie~~~~~---~~~~~g~~i~aD~vi~a~G~ 280 (588) T 3ics_A 205 NLRERGIEVTLVEM-ANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV---VRLKSGSVIQTDMLILAIGV 280 (588) T ss_dssp HHHHTTCEEEEECS-SSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE---EEETTSCEEECSEEEECSCE T ss_pred CCCCCCCCCCCEEE-CCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEE T ss_conf 00122433321020-233222221013567889887322112105542101123211---10247873124544112455 Q ss_pred CHHHHHHHHHHCCCCCC Q ss_conf 76799999996697111 Q T0604 276 SARDTFEMLHERGVYME 292 (549) Q Consensus 276 sard~~~~l~~~Gi~~~ 292 (549) .... .++...|+.+. T Consensus 281 ~Pn~--~ll~~~Gl~l~ 295 (588) T 3ics_A 281 QPES--SLAKGAGLALG 295 (588) T ss_dssp EECC--HHHHHTTCCBC T ss_pred ECCC--CCCCCCCCCCC T ss_conf 2055--43211476578 No 90 >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Probab=99.29 E-value=3.6e-12 Score=93.04 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=72.5 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+.||||||||||||.||..|++.+.+|+|+|+.+... ..++. + T Consensus 6 ~~k~trVvIIG~G~AGl~aA~~l~~~~~~V~li~~~~~~~--------~~~~~----------------------l---- 51 (385) T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP--------YYRPR----------------------L---- 51 (385) T ss_dssp --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC--------BCGGG----------------------H---- T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCC--------CCCCC----------------------H---- T ss_conf 8887999999998999999999827999789997998875--------65675----------------------5---- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) .+ .+. .....+-... ...+.+++.+++++.+++|+.|..++.. |++.+|++ T Consensus 52 -------~~---~~~-~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~V~~Id~~~~~---V~~~~g~~ 102 (385) T 3klj_A 52 -------NE---IIA-KNKSIDDILI---------------KKNDWYEKNNIKVITSEFATSIDPNNKL---VTLKSGEK 102 (385) T ss_dssp -------HH---HHH-SCCCGGGTBS---------------SCHHHHHHTTCEEECSCCEEEEETTTTE---EEETTSCE T ss_pred -------HH---HHC-CCCCHHHHHH---------------HHHHHHHHCCCEEEECCEEEEEECCCCE---EEECCCCE T ss_conf -------78---755-8999899977---------------5899999879899978789999379629---99889989 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +.+|.+|+|||. T Consensus 103 ~~~d~lviAtGs 114 (385) T 3klj_A 103 IKYEKLIIASGS 114 (385) T ss_dssp EECSEEEECCCE T ss_pred EECCEEEECCCC T ss_conf 987999998787 No 91 >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Probab=99.28 E-value=1.3e-12 Score=95.93 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=84.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCCC-CHHHHHH Q ss_conf 67766898798799999999996-5990899835888321101000124354236023455413556-5212-4045532 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGA-GTFS-DGKLYSQ 182 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~gga-g~fs-dgkl~t~ 182 (549) ..-.|+||||||+||++|+.|++ .|++|+||||.+.+.... +...+++.+...+...|. ..+. .+.-... T Consensus 31 ~~~DVlIVGaGpaGL~lA~~Lar~~Gi~v~ViEr~~~~~~~~-------ra~~l~prtleiL~~lGl~d~~~~~~~~~~~ 103 (639) T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELG-------QADGIACRTMEMFEAFEFADSILKEACWIND 103 (639) T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSC-------SCCEECHHHHHHHHHTTCHHHHHHHSEEECE T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-------CEEEECHHHHHHHHHCCCHHHHHHHCCCCCE T ss_conf 868999999398999999998721799789994899988788-------2899888999999987898999851754530 Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCC--CCCCCCCEECCHHHHHHHHHHHHHHHCC--CEEEEECCCCCCEECCCEE----E Q ss_conf 200021178999999966895100--1367641000127999999999999669--8899813433204058758----9 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEI--LYVSKPHIGTFKLVTMIEKMRATIIELG--GEIRFSTRVDDLHMEDGQI----T 254 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i--~~~~kph~gtd~~~~vv~~L~~~l~~~G--~~i~~~t~V~~i~~~~g~v----~ 254 (549) ............ .....+..... .....++. ......+.+.|++.+.+.+ +++++++++.++..+.+.. + T Consensus 104 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (639) T 2dkh_A 104 VTFWKPDPGQPG-RIARHGRVQDTEDGLSEFPHV-ILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVT 181 (639) T ss_dssp EEEEEECTTSTT-CEEEEEEEESSCTTSCSSCEE-ECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEE T ss_pred EEEEECCCCCCC-EEEECCCCCCCCCCCCCCCEE-ECCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCEE T ss_conf 699936888641-354124334544566668704-225889999999999853775167775786425774045432013 Q ss_pred -EEEEC------CCCEEEECEEEEECC-CCHHHHHHHHHHCCCCCCC Q ss_conf -99986------784897056899318-8767999999966971114 Q T0604 255 -GVTLS------NGEEIKSRHVVLAVG-HSARDTFEMLHERGVYMEA 293 (549) Q Consensus 255 -gV~t~------~g~~i~ad~VVlAtG-hsard~~~~l~~~Gi~~~~ 293 (549) .+... ..+++.++.||.|+| ||. . -+.+|+.+.. T Consensus 182 v~~~~~~~~~~g~~~~i~a~~vVgADG~~S~---V--R~~lgi~~~g 223 (639) T 2dkh_A 182 VTLERCDAAHAGQIETVQARYVVGCDGARSN---V--RRAIGRQLVG 223 (639) T ss_dssp EEEEECSGGGTTCEEEEEEEEEEECCCTTCH---H--HHHTTCCCEE T ss_pred EEEEEEECCCCCCEEEEEEEEEECCCCCHHH---H--HHHHCCCCCC T ss_conf 5777651157896589987889712310035---8--8773245778 No 92 >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* Probab=99.26 E-value=8.2e-12 Score=90.83 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=45.5 Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 6777887767766898798799999999996599089983588832110100 Q T0604 98 FVAKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 98 ~~~~~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) .+.+.+.+.++||||||||+|||.||..|+++|++|+|||+.+.+|+|.... T Consensus 98 ~~~~~~~~~~~kViVIGAGiaGL~aA~~La~~G~~V~VlEa~~r~GGr~~t~ 149 (662) T 2z3y_A 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF 149 (662) T ss_dssp CSSCCCSSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEE T ss_pred CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE T ss_conf 7999998999949998988899999999986899889997999884717689 No 93 >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=99.25 E-value=1.8e-10 Score=82.45 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=34.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 77668987987999999999965990899835888321 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .-.|||||+||||+.||..|++.|.+|+|+|+.+.+|+ T Consensus 6 ~yDvvIIG~G~aG~~aA~~aa~~g~~v~liek~~~~GG 43 (470) T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGG 43 (470) T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 68989999888999999999978897899973798435 No 94 >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavoprotein, FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Probab=99.25 E-value=4.1e-11 Score=86.47 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=33.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 7668987987999999999965990899835888321 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) -.||||||||||+.||+.|++.|.+|+|+||.+.+|+ T Consensus 7 YDvvIIGgGpAG~~aA~~a~~~g~~V~liEk~~~~GG 43 (482) T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG 43 (482) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 4689999888999999999978690999975899555 No 95 >1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase; HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A* 2wba_A* Probab=99.25 E-value=1.2e-10 Score=83.57 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=38.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 99999999999966988998134332040587589999867848970568993188 Q T0604 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 220 ~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) ..+.+.+.+.+++.|+++++++.++.+..+++..+.+++.+|+++++|.|++|+|. T Consensus 231 ~e~~~~l~~~l~~~gi~i~~~~~v~~i~~~~~g~~~v~~~~g~~i~aD~Vl~A~Gr 286 (485) T 1aog_A 231 HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR 286 (485) T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE T ss_pred HHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCEEEEECCCCEEECCEEEEEECC T ss_conf 77877677777625716974572599999589739999829909985899994361 No 96 >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Probab=99.24 E-value=4.5e-11 Score=86.21 Aligned_cols=112 Identities=13% Similarity=0.284 Sum_probs=69.3 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH Q ss_conf 77677668987987999999999965---990899835888321101000124354236023455413556521240455 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQM---GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY 180 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~---G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~ 180 (549) .+..+||||||||||||.||..|+++ +++|+|+|+.+... +.++.. ..... +. T Consensus 32 ~~~gkkVVIIGgG~AGl~aA~~l~r~~~~~~~Vtlie~~~~~~--------y~~~~l-----~~~~~----~~------- 87 (490) T 2bc0_A 32 DRWGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS--------FLGAGM-----ALWIG----EQ------- 87 (490) T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS--------BCGGGH-----HHHHT----TS------- T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--------CCCCCH-----HHHHC----CC------- T ss_conf 6899909998978999999999997389988399988999777--------777710-----56653----46------- Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 32200021178999999966895100136764100012799999999999966988998134332040587589999867 Q T0604 181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 181 t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) .-.+.++.+ ...+.+++.+++++.+++|++|..++..++.....+ T Consensus 88 -------------------~~~~~~~~~----------------~~~~~~~~~~i~~~~~~~V~~ID~~~k~V~~~~~g~ 132 (490) T 2bc0_A 88 -------------------IAGPEGLFY----------------SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGK 132 (490) T ss_dssp -------------------SSCSGGGBS----------------CCHHHHHHTTCEEETTCCEEEEETTTTEEEEEETTE T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHCCCEEEECCEEEEEECCCCEEEEEECCC T ss_conf -------------------689899866----------------369999977989993898999988998899996798 Q ss_pred CCEEEECEEEEECC Q ss_conf 84897056899318 Q T0604 261 GEEIKSRHVVLAVG 274 (549) Q Consensus 261 g~~i~ad~VVlAtG 274 (549) +.++++|.+|+||| T Consensus 133 ~~~i~yD~LVIATG 146 (490) T 2bc0_A 133 NHVETYDKLIFATG 146 (490) T ss_dssp EEEEECSEEEECCC T ss_pred EEEEEEEEEEECCC T ss_conf 79999658886376 No 97 >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Probab=99.23 E-value=2.6e-10 Score=81.37 Aligned_cols=37 Identities=35% Similarity=0.599 Sum_probs=34.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 7668987987999999999965990899835888321 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) -.|+|||||||||.||+.|++.|++|+|+|+.+.+|+ T Consensus 6 ~DvvIIG~GpAGl~aA~~~~~~G~~v~liEk~~~~GG 42 (478) T 1v59_A 6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG 42 (478) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 2389999888999999999978997899973799686 No 98 >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Probab=99.22 E-value=1.6e-11 Score=88.97 Aligned_cols=51 Identities=27% Similarity=0.405 Sum_probs=45.5 Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 777887767766898798799999999996599089983588832110100 Q T0604 99 VAKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 99 ~~~~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) +.+.+..+.+||||||||+|||.||+.|.++|++|+|||..+.+|+|.... T Consensus 270 ~~~~~~~k~kkVvVIGAGiAGLsAA~~L~~~G~~VtVLEArdRvGGRi~T~ 320 (852) T 2xag_A 270 IKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF 320 (852) T ss_dssp SSCCCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEE T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 899998999978998978899999999986899989993899873507789 No 99 >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} Probab=99.21 E-value=2.1e-10 Score=81.96 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=67.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 66898798799999999996599089983588832110100012435423602345541355652124045532200021 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPNF 188 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~~ 188 (549) .||||||||||+.||+.|++.|.+|+|+|++. +|+. | +|.-|-+. |......+ T Consensus 5 DvvIIG~GpAG~~aA~~a~~~g~~v~liEk~~-~GGt---------c--~n~GCiPs------------K~ll~~a~--- 57 (464) T 2a8x_A 5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGV---------C--LNVGCIPS------------KALLRNAE--- 57 (464) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHH---------H--HHHSHHHH------------HHHHHHHH--- T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCE---------E--EEECHHHH------------HHHHHHHH--- T ss_conf 88998988899999999996879099996899-7985---------1--10683647------------99999999--- Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHH----HHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC--C Q ss_conf 1789999999668951001367641000127999----999999999669889981343320405875899998678--4 Q T0604 189 YGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTM----IEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG--E 262 (549) Q Consensus 189 ~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~v----v~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g--~ 262 (549) ......+.+..+|...+...+.. ....+...+ ...........++++..+... ..+++.+. |.+.+| + T Consensus 58 ~~~~~~~~~~~~gi~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~v~-V~~~~g~~~ 131 (464) T 2a8x_A 58 LVHIFTKDAKAFGISGEVTFDYG--IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGT---FADANTLL-VDLNDGGTE 131 (464) T ss_dssp HHHHHHHHTTTTTEEECCEECHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEE---ESSSSEEE-EEETTSCCE T ss_pred HHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE---ECCCCEEE-EEECCCCEE T ss_conf 99999878986796744556899--9999999999987666788874178379973687---43798899-991799569 Q ss_pred EEEECEEEEECCC Q ss_conf 8970568993188 Q T0604 263 EIKSRHVVLAVGH 275 (549) Q Consensus 263 ~i~ad~VVlAtGh 275 (549) ++.++.+|+|+|. T Consensus 132 ~~~~~~~iiatG~ 144 (464) T 2a8x_A 132 SVTFDNAIIATGS 144 (464) T ss_dssp EEEEEEEEECCCE T ss_pred EEEEEEEEEECCC T ss_conf 9997446750455 No 100 >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Probab=99.21 E-value=2.6e-10 Score=81.42 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=31.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCC Q ss_conf 677668987987999999999965---99089983588832 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM---GFNPIIVERGKEVR 143 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~---G~~V~VlErg~~vg 143 (549) |.-||||||+||||+.||+.+++. |.+|+|+|+. .+| T Consensus 1 ~~t~vVIIG~GpaG~~AA~~aa~~~~~g~~V~lIEk~-~~G 40 (499) T 1xdi_A 1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIG 40 (499) T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTT T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC-CCC T ss_conf 9888899878889999999998568688989999359-966 No 101 >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Probab=99.20 E-value=3.8e-10 Score=80.37 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=66.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 766898798799999999996599--089983588832110100012435423602345541355652124045532200 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) .+|||||+|||||.||..|++.|. +|+|+|+++..- +.++.. .. .+..++ T Consensus 5 ~~vvIIG~G~AGl~aA~~l~~~~~~~~V~li~~~~~~~--------y~~~~l-------~~------~~~~~~------- 56 (384) T 2v3a_A 5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRS--------YSKPML-------ST------GFSKNK------- 56 (384) T ss_dssp CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCE--------ECGGGG-------GG------TTTTTC------- T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC--------CCCCCC-------HH------HHCCCC------- T ss_conf 99999978899999999998069798499996988887--------755656-------58------874888------- Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEE Q ss_conf 02117899999996689510013676410001279999999999996698899813433204058758999986784897 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ 265 (549) ..... .. . . .....++.+++++.+.+|++|..+... |.+.++ ++. T Consensus 57 ---~~~~~-------------~~-----~---~-------~~~~~~~~~~~~~~~~~V~~Id~~~~~---V~~~~~-~i~ 101 (384) T 2v3a_A 57 ---DADGL-------------AM-----A---E-------PGAMAEQLNARILTHTRVTGIDPGHQR---IWIGEE-EVR 101 (384) T ss_dssp ---CHHHH-------------EE-----E---C-------HHHHHHHTTCEEECSCCCCEEEGGGTE---EEETTE-EEE T ss_pred ---CHHHH-------------HC-----C---C-------HHHHHHHCCCEEEECCEEEEEECCCCE---EECCCC-EEE T ss_conf ---86883-------------20-----6---9-------999998569599968989999788858---953893-553 Q ss_pred ECEEEEECCC Q ss_conf 0568993188 Q T0604 266 SRHVVLAVGH 275 (549) Q Consensus 266 ad~VVlAtGh 275 (549) +|.+|+|||. T Consensus 102 ~d~lviAtG~ 111 (384) T 2v3a_A 102 YRDLVLAWGA 111 (384) T ss_dssp CSEEEECCCE T ss_pred CCEEEECCCC T ss_conf 1489993388 No 102 >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=99.19 E-value=5e-11 Score=85.89 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=32.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 767766898798799999999996599089983588 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .+.-.+||||+||||+.||..|++.|.+|+|+|++. T Consensus 3 ~~~~divIIG~G~AG~~aA~~a~~~g~~v~liEk~~ 38 (458) T 1lvl_A 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA 38 (458) T ss_dssp CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 652899999679899999999997889799994899 No 103 >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... Probab=99.19 E-value=3.7e-10 Score=80.47 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=31.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 7668987987999999999965990899835888321 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) -.|||||+|||||+||+.|++.|++|+|||++ .+|+ T Consensus 21 yDvvIIG~GpAGl~aA~~l~~~g~~V~viEk~-~~GG 56 (478) T 3dk9_A 21 YDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGG 56 (478) T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCC T ss_conf 37799887989999999999689959999689-9787 No 104 >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2cvj_A* Probab=99.17 E-value=6.6e-10 Score=78.87 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=64.9 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 66898798799999999996599089983588832110100012435423602345541355652124045532200021 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPNF 188 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~~ 188 (549) .|||||||||||+||+.|+++|++|+|||+++......... .. . ..+.+ T Consensus 3 DVvIIGaG~aGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~---------~~--~--------~~~~~------------ 51 (180) T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRV---------PN--Y--------PGLLD------------ 51 (180) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCC---------CC--S--------TTCTT------------ T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---------CC--C--------CCCCC------------ T ss_conf 39999982999999999998899889997888533442222---------35--5--------55434------------ Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECE Q ss_conf 17899999996689510013676410001279999999999996698899813433204058758999986784897056 Q T0604 189 YGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRH 268 (549) Q Consensus 189 ~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~ 268 (549) ......+.+..++...+....+.....+. .....+... +.+ .+.++.++. T Consensus 52 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~ 101 (180) T 2ywl_A 52 ---------------------------EPSGEELLRRLEAHARRYGAEVRPGVVKG-VRDMGGVFE-VET-EEGVEKAER 101 (180) T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHTTCEEEECCCCE-EEECSSSEE-EEC-SSCEEEEEE T ss_pred ---------------------------CCCHHHHHHHHHHHHHHCCCCCCCCCEEE-EEECCCCEE-EEE-CCCEEEEEE T ss_conf ---------------------------56418899998876652153112342033-210012179-981-277075308 Q ss_pred EEEECCCC Q ss_conf 89931887 Q T0604 269 VVLAVGHS 276 (549) Q Consensus 269 VVlAtGhs 276 (549) ||+|+|.. T Consensus 102 viiatG~~ 109 (180) T 2ywl_A 102 LLLCTHKD 109 (180) T ss_dssp EEECCTTC T ss_pred EEEECCCC T ss_conf 99961798 No 105 >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Probab=99.17 E-value=5.1e-10 Score=79.57 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=77.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH---------------HHHHHHC-- Q ss_conf 67766898798799999999996599089983588832110100012435423602---------------3455413-- Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPE---------------SNVQFGE-- 168 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~---------------~n~~~g~-- 168 (549) ..++|+|||||.+|+++|+.|+++|++|+||||.....+......+....+...+. +...+.. T Consensus 5 ~~~~V~IIGaGi~G~s~A~~La~~G~~V~vlE~~~~~~gaS~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363) T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWVELV 84 (363) T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHHHHT T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99978999958999999999997899489990788877654123777415774223358858999999999999999986 Q ss_pred CCC-CCCCCHHHHHHHHHHCCCHHHHHHHH-HHCCC-----CCCCCC----CCCCCEECCHHHHHHHHHHHHHHHCCCEE Q ss_conf 556-52124045532200021178999999-96689-----510013----67641000127999999999999669889 Q T0604 169 GGA-GTFSDGKLYSQVKDPNFYGRKVITEF-VEAGA-----PEEILY----VSKPHIGTFKLVTMIEKMRATIIELGGEI 237 (549) Q Consensus 169 gga-g~fsdgkl~t~~~~~~~~~~~vl~~~-~~~Ga-----~~~i~~----~~kph~gtd~~~~vv~~L~~~l~~~G~~i 237 (549) ... .....+.+....... ...... ..... +..... ...+..+.......+..+.+.+++.|+.+ T Consensus 85 ~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~l~~~~~~~G~~~ 159 (363) T 1c0p_A 85 PTGHAMWLKGTRRFAQNED-----GLLGHWYKDITPNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATF 159 (363) T ss_dssp TTTSSEEEEEEEEEESSGG-----GGGGGTTTTTSTTCEECCGGGSSTTCEEEEEEEEECCHHHHHHHHHHHHHHTTCEE T ss_pred HHCCCCCCCCEEEEECCHH-----HHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEE T ss_conf 1265421144579952545-----65555555544554213355402222455652279868999999999999749889 Q ss_pred EEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHH Q ss_conf 98134332040587589999867848970568993188767 Q T0604 238 RFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549) Q Consensus 238 ~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsar 278 (549) +..+.+..... ...++.||.|+|..+. T Consensus 160 ~~~~~~~~~~~--------------~~~~~~vv~~~g~~~~ 186 (363) T 1c0p_A 160 ERRTVTSLEQA--------------FDGADLVVNATGLGAK 186 (363) T ss_dssp EECCCSBGGGT--------------CSSCSEEEECCGGGGG T ss_pred EEEEEEEECCC--------------CCEEEEEEECCCCCHH T ss_conf 99677530102--------------2104799966871366 No 106 >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Probab=99.17 E-value=5e-10 Score=79.62 Aligned_cols=116 Identities=18% Similarity=0.298 Sum_probs=67.7 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 87767766898798799999999996599089983588832110100012435423602345541355652124045532 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQ 182 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~ 182 (549) |.+..-.|||||||||||+||+.|++.|++|+|+||+... ++..... ...+ T Consensus 4 ~~~~~yDVvIIGaG~AGl~aA~~l~~~g~~v~lid~~~~g-g~~~~~~-----~~~~----------------------- 54 (325) T 2q7v_A 4 PTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPG-GQIAWSE-----EVEN----------------------- 54 (325) T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT-GGGGGCS-----CBCC----------------------- T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CEEECCC-----CCCC----------------------- T ss_conf 9887799999998799999999999789978999279968-7781365-----1267----------------------- Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE--CCCEEEEEEECC Q ss_conf 200021178999999966895100136764100012799999999999966988998134332040--587589999867 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM--EDGQITGVTLSN 260 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~--~~g~v~gV~t~~ 260 (549) +.+.|+. ..........+........++..+ .++.+.. .+.....+...+ T Consensus 55 -------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~ 106 (325) T 2q7v_A 55 -------------------------FPGFPEP--IAGMELAQRMHQQAEKFGAKVEMD-EVQGVQHDATSHPYPFTVRGY 106 (325) T ss_dssp -------------------------STTCSSC--BCHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSSSCCEEEEES T ss_pred -------------------------CCCCCCC--CCHHHHHHHHHHHHHHHCCCEECC-CEEEEEEEECCCCCEEEEECC T ss_conf -------------------------5877412--470999999998666404411002-057899751366522588449 Q ss_pred CCEEEECEEEEECCC Q ss_conf 848970568993188 Q T0604 261 GEEIKSRHVVLAVGH 275 (549) Q Consensus 261 g~~i~ad~VVlAtGh 275 (549) +.++.+|+||+|||. T Consensus 107 ~~~~~~d~lviAtG~ 121 (325) T 2q7v_A 107 NGEYRAKAVILATGA 121 (325) T ss_dssp SCEEEEEEEEECCCE T ss_pred CEEEEECEEEEEECC T ss_conf 819994989998589 No 107 >3itj_A Thioredoxin reductase 1; cytoplasm, disulfide bond, FAD, flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-active center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae W303} PDB: 3d8x_A* Probab=99.17 E-value=1.1e-10 Score=83.65 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=71.4 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ..+..+|+|||||||||+||+.|++.|++|+|+|+....+.... +.+..... + T Consensus 19 ~~~~~kVvIIGgGpAGlsAA~~la~~G~~v~liE~~~~~~~~~g--------G~l~~~~~-------------------i 71 (338) T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAG--------GQLTTTTE-------------------I 71 (338) T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT--------CGGGGSSE-------------------E T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--------CEECCCCC-------------------C T ss_conf 77899999988769999999999988998899945776788646--------78473431-------------------1 Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCE--EEEEEECCC Q ss_conf 000211789999999668951001367641000127999999999999669889981343320405875--899998678 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQ--ITGVTLSNG 261 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~--v~gV~t~~g 261 (549) .+ + .|.+. ......+.+.+++.+...+..... ..+......... +..+...++ T Consensus 72 ~~--~-----------~g~~~-----------~~~~~el~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~ 126 (338) T 3itj_A 72 EN--F-----------PGFPD-----------GLTGSELMDRMREQSTKFGTEIIT-ETVSKVDLSSKPFKLWTEFNEDA 126 (338) T ss_dssp CC--S-----------TTCTT-----------CEEHHHHHHHHHHHHHHTTCEEEC-SCEEEEECSSSSEEEEETTCSSS T ss_pred CC--C-----------CCCCC-----------CCCHHHHHHHHHHHHHHHCCCCCE-EEEEEEEECCCCCEEEEEECCCC T ss_conf 33--5-----------77877-----------788799999999878752861001-48999851145514788980797 Q ss_pred CEEEECEEEEECCC Q ss_conf 48970568993188 Q T0604 262 EEIKSRHVVLAVGH 275 (549) Q Consensus 262 ~~i~ad~VVlAtGh 275 (549) +.+.++.+++|+|. T Consensus 127 ~~~~~~~i~ia~g~ 140 (338) T 3itj_A 127 EPVTTDAIILATGA 140 (338) T ss_dssp CCEEEEEEEECCCE T ss_pred EEEEEEEEEEECCC T ss_conf 69999888760465 No 108 >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Probab=99.17 E-value=1.2e-09 Score=77.17 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=33.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 77668987987999999999965990899835888321 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) +-.||||||||||+.||+.|++.|.+|+|+|+...... T Consensus 3 kyDvvIIG~G~aG~~aA~~a~~~g~~V~liek~~~~~~ 40 (476) T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEG 40 (476) T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTS T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 15599989888999999999978893999950577666 No 109 >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Probab=99.16 E-value=9.3e-10 Score=77.92 Aligned_cols=142 Identities=15% Similarity=0.050 Sum_probs=71.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) -.|||||+||||+.||..|++.|.+|+|+|+.+....-.+. .+....+|.-|.+.. ....... T Consensus 7 yDvvIIG~GpaG~~aA~~aa~~g~kValiE~~~~~~~~~~~---~~GGtCln~GCiPsK------------~l~~~a~-- 69 (488) T 3dgz_A 7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKW---GLGGTCVNVGCIPKK------------LMHQAAL-- 69 (488) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCC---CTTCHHHHHSHHHHH------------HHHHHHH-- T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CEECCCCCCCHHHHH------------HHHHHHH-- T ss_conf 46899997889999999999687949999602545667658---885621343808789------------9999999-- Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECC----HHHHHH----HHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC Q ss_conf 117899999996689510013676410001----279999----999999996698899813433204058758999986 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTF----KLVTMI----EKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS 259 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd----~~~~vv----~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~ 259 (549) .....+.+..+|.... ........ +...++ ...+..++..++.+....- .......+. +... T Consensus 70 --~~~~~~~~~~~g~~~~----~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~a---~~~~~~~~~-v~~~ 139 (488) T 3dgz_A 70 --LGGMIRDAHHYGWEVA----QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKA---SFVDEHTVR-GVDK 139 (488) T ss_dssp --HHHHHHHHHHTTCCCC----SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEE---EESSSSEEE-EECT T ss_pred --HHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE---EEEECCEEE-EECC T ss_conf --9999987885592147----76646899999999999998767889999865950643249---981034036-7738 Q ss_pred CCC--EEEECEEEEECCCC Q ss_conf 784--89705689931887 Q T0604 260 NGE--EIKSRHVVLAVGHS 276 (549) Q Consensus 260 ~g~--~i~ad~VVlAtGhs 276 (549) +++ .+.++.+|+|||.+ T Consensus 140 ~~~~~~~~~~~iiiATGs~ 158 (488) T 3dgz_A 140 GGKATLLSAEHIVIATGGR 158 (488) T ss_dssp TSCEEEEEEEEEEECCCEE T ss_pred CCCEEEEECCCEEEECCCC T ss_conf 9946888416479905788 No 110 >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus PY2} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* Probab=99.16 E-value=2.1e-10 Score=81.96 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=37.3 Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 8877677668987987999999999965990899835888321 Q T0604 102 APENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 102 ~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) -+.+..-.||||||||||+.||+.|++.|.+|+|+|+++.+|+ T Consensus 38 ~~~~k~YDvvIIG~GpAG~~aA~~~a~~G~kv~lIEk~~~lGG 80 (523) T 1mo9_A 38 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG 80 (523) T ss_dssp TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSC T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 9999811989999788999999999977998899976799786 No 111 >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Probab=99.16 E-value=3.9e-10 Score=80.33 Aligned_cols=35 Identities=40% Similarity=0.510 Sum_probs=32.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77668987987999999999965990899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .-.|||||+|+||+.+|..|+++|++|+|||+|.. T Consensus 11 ~~DvIIVGsG~aG~v~A~~La~aG~~VlvLEaG~~ 45 (507) T 1coy_A 11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507) T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 18889978768999999999668296999978889 No 112 >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossmann fold, 6-hydroxylated FAD; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Probab=99.15 E-value=6.7e-09 Score=72.54 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=38.8 Q ss_pred HHHHHHHHH-CCCEEEEECCCCCCEECCCEEEEEEECCC--------CEEEECEEEEECC Q ss_conf 999999996-69889981343320405875899998678--------4897056899318 Q T0604 224 EKMRATIIE-LGGEIRFSTRVDDLHMEDGQITGVTLSNG--------EEIKSRHVVLAVG 274 (549) Q Consensus 224 ~~L~~~l~~-~G~~i~~~t~V~~i~~~~g~v~gV~t~~g--------~~i~ad~VVlAtG 274 (549) ..+...+.+ .+.+|+.++.|+.|..++++.++|.+... ..+.++.||||.| T Consensus 199 ~~~~~~a~~~~~~~i~~~~~V~ri~~d~~~~~gv~~~~~~~~~~~~~~~~~a~~VVlaAG 258 (546) T 1kdg_A 199 ATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAG 258 (546) T ss_dssp HTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSH T ss_pred HHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEEECCC T ss_conf 321125652896389833688898724861267886320122324899996105884376 No 113 >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* Probab=99.15 E-value=2.4e-09 Score=75.35 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=62.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 67766898798799999999996599--0899835888321101000124354236023455413556521240455322 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) .+.+|||||+|+||+.||..|.+.|. +|+|+++.+...- .+... + .. +..+.. T Consensus 3 ~~~~VVIIG~G~AGl~aA~~Lr~~~~~~~I~li~~e~~~~y--------~r~~L----s-~~--------~l~g~~---- 57 (431) T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH--------HLPPL----S-KA--------YLAGKA---- 57 (431) T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB--------CSGGG----G-TT--------TTTTCS---- T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--------CCCCC----H-HH--------HHCCCC---- T ss_conf 99999998987999999999970595996999948756777--------76643----0-99--------856998---- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) ...++.. . ..+..++.+++++.+++|+.|..+... |.+.+|++ T Consensus 58 ------------------~~~~i~~---------~-------~~~~~~~~~i~~~~g~~V~~Id~~~k~---V~~~~g~~ 100 (431) T 1q1r_A 58 ------------------TAESLYL---------R-------TPDAYAAQNIQLLGGTQVTAINRDRQQ---VILSDGRA 100 (431) T ss_dssp ------------------CSGGGBS---------S-------CHHHHHHTTEEEECSCCEEEEETTTTE---EEETTSCE T ss_pred ------------------CHHHHCC---------C-------CHHHHHHCCCEEEECCEEEEEECCCCE---EEECCCEE T ss_conf ------------------8899545---------8-------899998789799918889998379888---99899819 Q ss_pred EEECEEEEECCCC Q ss_conf 9705689931887 Q T0604 264 IKSRHVVLAVGHS 276 (549) Q Consensus 264 i~ad~VVlAtGhs 276 (549) +..|.+|+|||.+ T Consensus 101 i~yd~LviAtG~~ 113 (431) T 1q1r_A 101 LDYDRLVLATGGR 113 (431) T ss_dssp EECSEEEECCCEE T ss_pred EECCEEEEECCCC T ss_conf 9734389812773 No 114 >3dme_A Conserved exported protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Probab=99.15 E-value=5.7e-10 Score=79.26 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=89.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCCCCCCCC-CHHHH---------HHHH----CCCCC Q ss_conf 76689879879999999999659908998358883211-0100012435423-60234---------5541----35565 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRER-TKDTFGFWRKRTL-NPESN---------VQFG----EGGAG 172 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r-~~~~~~~~~~~~~-~~~~n---------~~~g----~ggag 172 (549) -.|||||||.+|+++|+.|+++|++|+||||+..++.. +....+....+.. .+... ..+. ..... T Consensus 5 ~DVvIIGaGi~G~s~A~~La~~G~~V~lie~~~~~~~gaS~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (369) T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVP 84 (369) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHHHTCC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 88999991199999999999788949999789998663024634571777678956899999999999999887623754 Q ss_pred CCCCHHHHHH-HHHHCCCHHHHHHHHHHCCCCCC-----------------CCCCCCCCEECCHHHHHHHHHHHHHHHCC Q ss_conf 2124045532-20002117899999996689510-----------------01367641000127999999999999669 Q T0604 173 TFSDGKLYSQ-VKDPNFYGRKVITEFVEAGAPEE-----------------ILYVSKPHIGTFKLVTMIEKMRATIIELG 234 (549) Q Consensus 173 ~fsdgkl~t~-~~~~~~~~~~vl~~~~~~Ga~~~-----------------i~~~~kph~gtd~~~~vv~~L~~~l~~~G 234 (549) ....+.+... ..................+.... ......+.-+.......+..+...+...+ T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~ 164 (369) T 3dme_A 85 HQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDG 164 (369) T ss_dssp EECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHCC T ss_conf 20056401233167778999999988863874200102344320256422251798168758701675445566676446 Q ss_pred CEEEEECCCCCCEECCCEEEEEEECCC--CEEEECEEEEECCCCHHHHH Q ss_conf 889981343320405875899998678--48970568993188767999 Q T0604 235 GEIRFSTRVDDLHMEDGQITGVTLSNG--EEIKSRHVVLAVGHSARDTF 281 (549) Q Consensus 235 ~~i~~~t~V~~i~~~~g~v~gV~t~~g--~~i~ad~VVlAtGhsard~~ 281 (549) ..+..+++|+.+...+.....+..... ....++.||.++|..+.... T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 213 (369) T 3dme_A 165 AQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLA 213 (369) T ss_dssp CEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHH T ss_pred CEEEEEEEEEEEEEECCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHH T ss_conf 3488754566799834884488863033322100001010124178899 No 115 >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Probab=99.14 E-value=6.8e-10 Score=78.79 Aligned_cols=111 Identities=23% Similarity=0.396 Sum_probs=68.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .+.|+|||||||||.||+.|++.|++|+|+|+.+..++ .. ... +.+.+ .+ +. T Consensus 14 ~~dVvIIGgGpAGlsaA~~l~~~g~~v~lie~~~~gG~-~~------~~~-----~i~~~--~~---~~----------- 65 (335) T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGA-LM------TTT-----DVENY--PG---FR----------- 65 (335) T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCG-GG------SCS-----CBCCS--TT---CT----------- T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCE-EE------ECC-----CCCCC--CC---CC----------- T ss_conf 88799989879999999999988996899867985865-56------516-----72885--66---64----------- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) .. .....+.+.++...............+... .++....+.+.++.++.+ T Consensus 66 -------------------------~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 115 (335) T 2a87_A 66 -------------------------NG---ITGPELMDEMREQALRFGADLRMEDVESVS--LHGPLKSVVTADGQTHRA 115 (335) T ss_dssp -------------------------TC---BCHHHHHHHHHHHHHHTTCEEECCCEEEEE--CSSSSEEEEETTSCEEEE T ss_pred -------------------------CC---CCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCEEEECCCCCEEEE T ss_conf -------------------------45---788999988888765420000011100110--256621367489858998 Q ss_pred CEEEEECCC Q ss_conf 568993188 Q T0604 267 RHVVLAVGH 275 (549) Q Consensus 267 d~VVlAtGh 275 (549) +.+|+|+|. T Consensus 116 ~~liiatG~ 124 (335) T 2a87_A 116 RAVILAMGA 124 (335) T ss_dssp EEEEECCCE T ss_pred EEEEECCCC T ss_conf 788850466 No 116 >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Probab=99.14 E-value=4.2e-10 Score=80.13 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=46.0 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEC-CCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 27999999999999669889981343320405-87589999867848970568993188 Q T0604 218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 218 ~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~-~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) ....+.+.|++.+...++..+...+|+++..+ +|.+..+++.+|.++++|.+|-|+|- T Consensus 192 DA~~~~~~l~~~~~~~~~v~~~~~~v~~v~~d~~G~i~~l~~~~g~~i~aD~~IDcSGf 250 (550) T 2e4g_A 192 DAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGF 250 (550) T ss_dssp CHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGG T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEECCEECCCCCC T ss_conf 79998789987543316531358758887607988768998357844542321056652 No 117 >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Probab=99.13 E-value=4e-11 Score=86.51 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=40.4 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC Q ss_conf 76776689879879999999999659908998358883211010 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKD 148 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~ 148 (549) ...|||||||||+|||.||+.|+++|++|+|||+.+.+|+|... T Consensus 11 ~~~kkVvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~s 54 (504) T 1sez_A 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 54 (504) T ss_dssp --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE T ss_conf 99891899897889999999998689999999289988074689 No 118 >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} Probab=99.13 E-value=1.3e-10 Score=83.33 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=64.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 76689879879999999999659--9089983588832110100012435423602345541355652124045532200 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) +||||||+|||||.||..|++.| ++|+|+|+++..... .++. . .+..+. T Consensus 4 KkVvIIGgG~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~--------~~~~-------~-------~~~~g~------- 54 (449) T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA--------PCGI-------P-------YVVEGL------- 54 (449) T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------------------------ T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC--------CCCC-------H-------HHCCCC------- T ss_conf 8099989889999999999806989838999388767888--------8842-------4-------222676------- Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCC-EE Q ss_conf 02117899999996689510013676410001279999999999996698899813433204058758999986784-89 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGE-EI 264 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~-~i 264 (549) .. +.++. .......+++.|++++++++|+++..+ .. -|.+.+|+ ++ T Consensus 55 ---~~------------~~~~~---------------~~~~~~~~~~~~i~~~~~~~v~~Id~~--~~-~v~~~~g~~~i 101 (449) T 3kd9_A 55 ---ST------------PDKLM---------------YYPPEVFIKKRGIDLHLNAEVIEVDTG--YV-RVRENGGEKSY 101 (449) T ss_dssp -----------------------------------------CTHHHHTTCEEETTCEEEEECSS--EE-EEECSSSEEEE T ss_pred ---CC------------HHHHH---------------HCCHHHHHHHCCCEEEECCEEEEEECC--CE-EEEEECCCCEE T ss_conf ---89------------89985---------------508999998769399968889999688--37-99640342100 Q ss_pred EECEEEEECCCC Q ss_conf 705689931887 Q T0604 265 KSRHVVLAVGHS 276 (549) Q Consensus 265 ~ad~VVlAtGhs 276 (549) .+|.+|+|+|.+ T Consensus 102 ~~d~lviatG~~ 113 (449) T 3kd9_A 102 EWDYLVFANGAS 113 (449) T ss_dssp ECSEEEECCCEE T ss_pred CCCCCCCCCCCC T ss_conf 012111233567 No 119 >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Probab=99.13 E-value=3.4e-11 Score=86.98 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=40.8 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCC Q ss_conf 7767766898798799999999996599-089983588832110100 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKDT 149 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~vg~r~~~~ 149 (549) .+.++||||||||+|||.||+.|+++|+ +|+|||+.+.+|+|.... T Consensus 5 ~~~~~~VvIIGaG~aGLsaA~~L~~~G~~~V~VlEa~~~~GGr~~T~ 51 (516) T 1rsg_A 5 SPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTV 51 (516) T ss_dssp -CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEE T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEE T ss_conf 98979889989688999999999867999789997899880665268 No 120 >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Probab=99.13 E-value=6.3e-11 Score=85.25 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=41.9 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 87767766898798799999999996599089983588832110100 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) ....+++|||||||+|||.||+.|+++|++|+|||+.+.+|+|.... T Consensus 7 ~~~~~~dV~IIGaG~aGL~aA~~La~~G~~V~VlEa~~~~GGr~~t~ 53 (489) T 2jae_A 7 KVKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTA 53 (489) T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEE T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 88898958998978899999999985899899990899885656799 No 121 >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Probab=99.13 E-value=5.9e-10 Score=79.18 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=45.5 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCEE-CCCEEEEEEECCCCEEEECEEEEECCC Q ss_conf 2799999999999966988998134332040-587589999867848970568993188 Q T0604 218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKSRHVVLAVGH 275 (549) Q Consensus 218 ~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~-~~g~v~gV~t~~g~~i~ad~VVlAtGh 275 (549) ....+...|++.+...++..... .+.++.. ++|.+..+.+.++..+.+|.+|-|+|- T Consensus 163 Da~~~~~~L~~~a~~~~v~~i~~-~v~~v~~~~~G~i~~~~~~~~~~i~aD~fIDcSGf 220 (538) T 2aqj_A 163 DAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGM 220 (538) T ss_dssp CHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGG T ss_pred CHHHHHHHHHHCCCCCCCCCCCE-EEEEEEECCCCCEECCCCCCCCEEEHHHHHHCCCC T ss_conf 69987567552210034555540-79988855788550223564204421111000455 No 122 >1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} Probab=99.13 E-value=5.6e-11 Score=85.60 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=38.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC Q ss_conf 6776689879879999999999659908998358883211010 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKD 148 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~ 148 (549) |+..|+|||||||||+||+.|+++|++|+||||.+.+|++... T Consensus 1 Mt~dV~IIGaGpaGL~~A~~La~~G~~V~viEk~~~~GG~~~t 43 (336) T 1yvv_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336) T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC T ss_conf 9997999893899999999999789978999698999975544 No 123 >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Probab=99.13 E-value=4.3e-10 Score=80.03 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=67.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 6689879879999999999659--90899835888321101000124354236023455413556521240455322000 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) |||||||||||+.||..|++.| .+|+|+|+++.... ..++. ..... +.+. + T Consensus 2 KVvIIGgG~AGl~aA~~l~~~~~~~~V~lie~~~~~~~--------~~~~~-------~~~~~--~~~~---------~- 54 (447) T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--------LSAGM-------QLYLE--GKVK---------D- 54 (447) T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--------CGGGH-------HHHHT--TSSC---------C- T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--------CCCHH-------HHHHC--CCCC---------C- T ss_conf 79999978999999999980696883899918986687--------77745-------66533--6668---------9- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC--CCCEE Q ss_conf 2117899999996689510013676410001279999999999996698899813433204058758999986--78489 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS--NGEEI 264 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~--~g~~i 264 (549) ...+.+ ...+.+++.|++++.+++|+.|..+...+....+. +++++ T Consensus 55 ----------------~~~~~~----------------~~~~~~~~~~i~~~~~~~V~~Id~~~~~v~~~~~~~~~~~~~ 102 (447) T 1nhp_A 55 ----------------VNSVRY----------------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVE 102 (447) T ss_dssp ----------------GGGSBS----------------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEE T ss_pred ----------------HHHHHH----------------HHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCCCEEEE T ss_conf ----------------799743----------------249999977999984887999987788899997137966999 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) .+|++|+|||. T Consensus 103 ~yd~lViATGs 113 (447) T 1nhp_A 103 NYDKLIISPGA 113 (447) T ss_dssp ECSEEEECCCE T ss_pred ECCEEEECCCC T ss_conf 86979987875 No 124 >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Probab=99.12 E-value=1.6e-10 Score=82.71 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=34.5 Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 887767766898798799999999996599089983588 Q T0604 102 APENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 102 ~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ....|++||+|||||||||++|+.|+++|++|+|+|+.. T Consensus 17 ~~~~m~~rIaIVGAGpaGL~lA~~Lar~G~~V~vve~r~ 55 (430) T 3ihm_A 17 RGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430) T ss_dssp ------CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 998999998999918899999999985899889997278 No 125 >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ binding, reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori 26695} PDB: 2q0k_A* 3ish_A* Probab=99.11 E-value=1.3e-09 Score=76.99 Aligned_cols=111 Identities=17% Similarity=0.273 Sum_probs=71.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) ..|+|||||||||+||+.|++.|++++|+|....+|++......+ . + | T Consensus 2 ~DV~IIGaGpAGlsaA~~l~~~g~~~~li~~~~~~GG~~~~~~~i-----~----~----------~------------- 49 (311) T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEI-----E----N----------Y------------- 49 (311) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCB-----C----C----------S------------- T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCC-----C----C----------C------------- T ss_conf 399998988999999999997899729999469848666325521-----6----7----------5------------- Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEEC Q ss_conf 11789999999668951001367641000127999999999999669889981343320405875899998678489705 Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSR 267 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad 267 (549) .|.+. ......+.+.++......+............. +.... .+.+..+.++.++ T Consensus 50 ------------~g~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~g~~~~~~ 104 (311) T 2q0l_A 50 ------------PGVKE-----------VVSGLDFMQPWQEQCFRFGLKHEMTAVQRVSK-KDSHF-VILAEDGKTFEAK 104 (311) T ss_dssp ------------TTCCS-----------CBCHHHHHHHHHHHHHTTSCEEECSCEEEEEE-ETTEE-EEEETTSCEEEEE T ss_pred ------------CCCCC-----------CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCCCE-EEEEECCCEEEEE T ss_conf ------------88734-----------37769999999875542001111025787520-57750-4674068499830 Q ss_pred EEEEECCC Q ss_conf 68993188 Q T0604 268 HVVLAVGH 275 (549) Q Consensus 268 ~VVlAtGh 275 (549) .+|+|+|. T Consensus 105 ~~i~a~g~ 112 (311) T 2q0l_A 105 SVIIATGG 112 (311) T ss_dssp EEEECCCE T ss_pred EEEEECCC T ss_conf 79991157 No 126 >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* Probab=99.11 E-value=1.2e-09 Score=77.28 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=37.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC Q ss_conf 6689879879999999999659908998358883211010 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKD 148 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~ 148 (549) .|+|||||||||.||+.|++.|++|+|+|+.+.+|+.... T Consensus 130 DVvIIGgGpaGlsAA~~aa~~G~~VlLvEe~~~~GG~l~~ 169 (965) T 2gag_A 130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD 169 (965) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC T ss_conf 8999994099999999999788968999689989866446 No 127 >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=99.11 E-value=2.1e-09 Score=75.74 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=32.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 677668987987999999999965990899835888321 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) |.-.||||||||||+.||+.|++.|.+|+|+|++ .+|+ T Consensus 1 m~YDvvIIG~GpAGl~aA~~~~~~g~~V~liEk~-~~GG 38 (500) T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGG 38 (500) T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTH T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCC T ss_conf 9578999898889999999999688939999579-9787 No 128 >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* Probab=99.11 E-value=7.9e-11 Score=84.66 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=40.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 67766898798799999999996599089983588832110100 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) .+++|+|||||+|||.||+.|+++|++|+|||+.+.+|++..+. T Consensus 2 ~~kkv~IIGaG~sGL~aA~~L~~~g~~V~l~Ek~~~~GG~~~t~ 45 (384) T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA 45 (384) T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 96879998960999999999986899689997799266845799 No 129 >3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A* Probab=99.11 E-value=8.2e-11 Score=84.56 Aligned_cols=105 Identities=17% Similarity=0.256 Sum_probs=67.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 6776689879879999999999659--90899835888321101000124354236023455413556521240455322 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) |.++|||||||+|||.||..|++.+ ++|+|+|+.+... .. + ..+... .|.++ T Consensus 1 M~K~VvIIGgG~AGl~aA~~L~~~~~~~~VtlI~~~~~~~---------~~-----p-~l~~~~---~g~~~-------- 54 (430) T 3h28_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG---------FT-----P-AFPHLA---MGWRK-------- 54 (430) T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE---------CG-----G-GHHHHH---HTCSC-------- T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------CC-----C-CHHHHH---CCCCC-------- T ss_conf 9997899898899999999996369668599992888776---------67-----6-678986---18887-------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) +.++... +++.+.+.|++++.+ +|+.|..++.. |++.+|++ T Consensus 55 -------------------~~~i~~~----------------~~~~~~~~~v~~i~~-~v~~ID~~~~~---V~~~~g~~ 95 (430) T 3h28_A 55 -------------------FEDISVP----------------LAPLLPKFNIEFINE-KAESIDPDANT---VTTQSGKK 95 (430) T ss_dssp -------------------GGGSEEE----------------STTTGGGGTEEEECS-CEEEEETTTTE---EEETTCCE T ss_pred -------------------HHHHHHH----------------HHHHHHHCCCEEEEE-EEEEEECCCCE---EEECCCCE T ss_conf -------------------8997536----------------999998789499984-79999888998---99789969 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +++|++|+|||. T Consensus 96 i~yD~LviAtGs 107 (430) T 3h28_A 96 IEYDYLVIATGP 107 (430) T ss_dssp EECSEEEECCCC T ss_pred EECCEEEEECCC T ss_conf 983379980576 No 130 >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Probab=99.10 E-value=1.7e-09 Score=76.25 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=68.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 67766898798799999999996599--0899835888321101000124354236023455413556521240455322 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+|||||||||||.||..|++.|. +|+|||+.+..- ..++.. +.. +..+..... ...... T Consensus 10 ~h~~VVIIGgG~AGlsaA~~Lr~~~~~~~Itli~~e~~~~--------Y~r~~L----sk~-~~~~~~~~~---~~~~~~ 73 (493) T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP--------YMRPPL----SKE-LWFSDDPNV---TKTLRF 73 (493) T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC--------BCSGGG----GTG-GGCC--CTH---HHHCEE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCCCCC----CHH-HHCCCCCCC---CCCCCC T ss_conf 8699999888699999999999519599789996988765--------457742----087-750645321---112232 Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) ... ......+......+.... .....+++.+++++.+++|+.|..++.. |++.+|++ T Consensus 74 ~~~-------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~I~~~~g~~V~~ID~~~k~---V~~~dG~~ 130 (493) T 1m6i_A 74 KQW-------------NGKERSIYFQPPSFYVSA-------QDLPHIENGGVAVLTGKKVVQLDVRDNM---VKLNDGSQ 130 (493) T ss_dssp ECT-------------TSCEEESBSSCGGGSBCT-------TTTTTSTTCEEEEEETCCEEEEEGGGTE---EEETTSCE T ss_pred CCC-------------CCCCCCCCCCCHHHHHHH-------HHHHHHHHCCEEEEECCEEEEEECCCCE---EEECCCCE T ss_conf 335-------------653100014718888766-------7888987189399908869999689998---99899969 Q ss_pred EEECEEEEECCCC Q ss_conf 9705689931887 Q T0604 264 IKSRHVVLAVGHS 276 (549) Q Consensus 264 i~ad~VVlAtGhs 276 (549) +.+|.+|+|||.+ T Consensus 131 i~yD~LVIAtGs~ 143 (493) T 1m6i_A 131 ITYEKCLIATGGT 143 (493) T ss_dssp EEEEEEEECCCEE T ss_pred EECCEEEEEECCC T ss_conf 9834799942266 No 131 >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Probab=99.10 E-value=1.1e-09 Score=77.60 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=63.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 7668987987999999999965---9908998358883211010001243542360234554135565212404553220 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQM---GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~---G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) +||||||||+|||.||..|++. +++|+|+|+.+.... .... + +-..+.... T Consensus 2 kkVvIIG~G~aGl~aA~~L~~~~~~~~~Vtlie~~~~~~~---------~p~~------~---~v~~g~~~~-------- 55 (409) T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF---------RPAL------P---HVAIGVRDV-------- 55 (409) T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEE---------CCSS------C---CCCSSCCCC-------- T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------CCCH------H---HHHCCCCCH-------- T ss_conf 8099989869999999999831899897999978986545---------6756------6---773087788-------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC--C Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678--4 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG--E 262 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g--~ 262 (549) .++. .. +++.+.+.++++..+ +|+.|..++..+. +...++ . T Consensus 56 -------------------~~~~---------~~-------~~~~~~~~~i~~i~~-~v~~Id~~~~~v~-~~~~~g~~~ 98 (409) T 3h8l_A 56 -------------------DELK---------VD-------LSEALPEKGIQFQEG-TVEKIDAKSSMVY-YTKPDGSMA 98 (409) T ss_dssp -------------------CCEE---------EE-------HHHHTGGGTCEEEEC-EEEEEETTTTEEE-EECTTSCEE T ss_pred -------------------HHHH---------HC-------HHHHHHHCCCEEEEE-EEEEEECCCCEEE-EEEECCCCE T ss_conf -------------------9950---------18-------999998789899987-7999962236035-433147733 Q ss_pred EEEECEEEEECCC Q ss_conf 8970568993188 Q T0604 263 EIKSRHVVLAVGH 275 (549) Q Consensus 263 ~i~ad~VVlAtGh 275 (549) ++..|.+|+|+|. T Consensus 99 ~i~yD~lviAtG~ 111 (409) T 3h8l_A 99 EEEYDYVIVGIGA 111 (409) T ss_dssp EEECSEEEECCCC T ss_pred EEECCHHHCCCCC T ss_conf 8962453104799 No 132 >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I; coenzyme A, flavin adenine dinucleotide, selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Probab=99.08 E-value=7.3e-10 Score=78.60 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=30.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCC Q ss_conf 776689879879999999999659--908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~v 142 (549) .-+|||||||||||.||..|++.| .+|+|+|++... T Consensus 36 ~ydvVIIGgG~AGl~aA~~l~~~g~~~~V~lie~~~~~ 73 (480) T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY 73 (480) T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 99999999779999999999827999809999698856 No 133 >3kpk_A Sulfide-quinone reductase, putative; oxidoreductases, sulfide:quinone oxidoreductase, C160A mutant, oxidoreductase; HET: FAD LMT; 2.05A {Acidithiobacillus ferrooxidans ATCC23270} PDB: 3kpg_A* 3kpi_A* Probab=99.08 E-value=3.5e-10 Score=80.57 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=68.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 7668987987999999999965---9908998358883211010001243542360234554135565212404553220 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQM---GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~---G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) +||||||||+||+.||..|++. |++|+|+|+.+...- .+ ..+.... +.. T Consensus 2 ~kVvIIG~G~AGl~aA~~L~~~l~~~~~VtlId~~~~~~~--------------~p-~~~~v~~---g~~---------- 53 (434) T 3kpk_A 2 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF--------------VP-SNPWVGV---GWK---------- 53 (434) T ss_dssp CEEEEECCSTTHHHHHHHHHHHHCTTSEEEEECSSSEEEC--------------GG-GHHHHHH---TSS---------- T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--------------CC-CHHHHHC---CCC---------- T ss_conf 9689989899999999999854799783999989887676--------------67-6778741---878---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) . + ..+...+++.+.+.+++++.+ +|+.|..++.. |++.+|+++ T Consensus 54 ----~-------------~----------------~~i~~~~~~~~~~~~v~~i~~-~V~~Id~~~~~---V~l~~g~~i 96 (434) T 3kpk_A 54 ----E-------------R----------------DDIAFPIRHYVERKGIHFIAQ-SAEQIDAEAQN---ITLADGNTV 96 (434) T ss_dssp ----C-------------H----------------HHHEEECHHHHHTTTCEEECC-CEEEEETTTTE---EEETTSCEE T ss_pred ----C-------------H----------------HHHHHCHHHHHHHCCCEEEEE-EEEEEECCCCE---EEECCCCEE T ss_conf ----8-------------9----------------997526999998789799985-79999889999---998899799 Q ss_pred EECEEEEECCCC Q ss_conf 705689931887 Q T0604 265 KSRHVVLAVGHS 276 (549) Q Consensus 265 ~ad~VVlAtGhs 276 (549) +.|++|+|||.+ T Consensus 97 ~yD~LViAtGs~ 108 (434) T 3kpk_A 97 HYDYLMIATGPK 108 (434) T ss_dssp ECSEEEECCCEE T ss_pred ECCEEEECCCCC T ss_conf 867699887896 No 134 >2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein, oxidoreductase, chimeric enzyme, thiol-mediated detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma mansoni} PDB: 3h4k_A* Probab=99.05 E-value=4.7e-09 Score=73.51 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=71.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 76689879879999999999659908998358883211010001243542360234554135565212404553220002 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~~ 187 (549) -.|||||+|||||+||+.+++.|.+|+|+|+......... ..++ ...+|.-|-+. |+..+... T Consensus 108 YDvvVIGgGpAGlsAA~~aar~G~kV~viE~~~~~~~~~~--~~lG-GtCln~GCIPs------------K~l~~aa~-- 170 (596) T 2v6o_A 108 YDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTT--WGLG-GTCVNVGCIPK------------KLMHQAGL-- 170 (596) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCC--CCTT-CHHHHHSHHHH------------HHHHHHHH-- T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--CCCC-CEEEEECHHHH------------HHHHHHHH-- T ss_conf 8789989788899999999985996579832455665666--8766-54111571747------------99999999-- Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCE-ECCHHHHH----HHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC- Q ss_conf 117899999996689510013676410-00127999----999999999669889981343320405875899998678- Q T0604 188 FYGRKVITEFVEAGAPEEILYVSKPHI-GTFKLVTM----IEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG- 261 (549) Q Consensus 188 ~~~~~vl~~~~~~Ga~~~i~~~~kph~-gtd~~~~v----v~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g- 261 (549) ..+.++....+|..........-.. -..+.... ...+...+++.++++..+... ......+. +...++ T Consensus 171 --~~~~~~~~~~~G~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~~l~~~~V~~~~g~~~---~~~~~~~~-~~~~~~~ 244 (596) T 2v6o_A 171 --LSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGR---LISPHEVQ-ITDKNQK 244 (596) T ss_dssp --HHHHHHHHHHTTCCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEE---ESSSSEEE-EECTTCC T ss_pred --HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE---ECCCCCCE-ECCCCCC T ss_conf --99999878766965457543677999999999999988788999988679289996899---73787530-0157753 Q ss_pred -CEEEECEEEEECCC Q ss_conf -48970568993188 Q T0604 262 -EEIKSRHVVLAVGH 275 (549) Q Consensus 262 -~~i~ad~VVlAtGh 275 (549) +++.++.+|+|||. T Consensus 245 ~~~i~a~~vIiATGa 259 (596) T 2v6o_A 245 VSTITGNKIILATGE 259 (596) T ss_dssp EEEEEEEEEEECCCE T ss_pred EEEEEEEEEEECCCC T ss_conf 499995448987899 No 135 >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Probab=99.04 E-value=2.7e-09 Score=74.98 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 766898798799999999996599089983588832 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) -.|||||+||||+.||..|++.|.+|+|+|++ .+| T Consensus 12 YDvvIIG~G~aG~~aA~~a~~~g~~V~iiE~~-~~G 46 (479) T 2hqm_A 12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALG 46 (479) T ss_dssp EEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTT T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCC T ss_conf 36899898889999999999687929999489-978 No 136 >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Probab=99.04 E-value=6.5e-09 Score=72.63 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=70.9 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH Q ss_conf 87767766898798799999999996599--0899835888321101000124354236023455413556521240455 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY 180 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~ 180 (549) .+.|+.+|||||||+||+.||..|.+.|. +|+|+++.+..- +.++. ++.. T Consensus 3 ~~~mk~~VVIIGgG~AGl~aA~~Lr~~~~~~~Itli~~e~~~~--------y~rp~-----------------Ls~~--- 54 (408) T 2gqw_A 3 QEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP--------YDRPP-----------------LSKD--- 54 (408) T ss_dssp ---CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC--------BCSGG-----------------GGTH--- T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC--------CCCCC-----------------CHHH--- T ss_conf 4468899999898799999999997519598199997988877--------75661-----------------7399--- Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 32200021178999999966895100136764100012799999999999966988998134332040587589999867 Q T0604 181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 181 t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) ++ ......++... + .+..+++++.+++|+.|..++.. |++.+ T Consensus 55 ------------~~----~~~~~~~~~~~----------------~---~~~~~i~~~~~~~V~~Id~~~~~---V~~~~ 96 (408) T 2gqw_A 55 ------------FM----AHGDAEKIRLD----------------C---KRAPEVEWLLGVTAQSFDPQAHT---VALSD 96 (408) T ss_dssp ------------HH----HHCCGGGSBCC----------------C---TTSCSCEEEETCCEEEEETTTTE---EEETT T ss_pred ------------HH----CCCCHHHHCHH----------------H---HHHCCCEEEECCEEEEEECCCCE---EEECC T ss_conf ------------86----69996893443----------------7---98689699968989999899888---99889 Q ss_pred CCEEEECEEEEECCCC Q ss_conf 8489705689931887 Q T0604 261 GEEIKSRHVVLAVGHS 276 (549) Q Consensus 261 g~~i~ad~VVlAtGhs 276 (549) |+++..|++|+|+|.+ T Consensus 97 G~~~~yD~LviAtGs~ 112 (408) T 2gqw_A 97 GRTLPYGTLVLATGAA 112 (408) T ss_dssp SCEEECSEEEECCCEE T ss_pred CCEEEEEEEEECCCCC T ss_conf 8299930688735443 No 137 >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3} Probab=99.02 E-value=7.6e-10 Score=78.49 Aligned_cols=106 Identities=23% Similarity=0.254 Sum_probs=64.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .-.|+|||+|||||.||+.+++ |.+|+|+|....+|++... .+. ..+ .+ T Consensus 108 ~~DVlIIGaGPAGl~AA~~a~~-g~~vvLvde~~~~GG~l~~------~~~----------------~~~-~~------- 156 (493) T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQ-YLTVALIEERGWLGGDMWL------KGI----------------KQE-GF------- 156 (493) T ss_dssp EESCCEECCSHHHHHHHHHHTT-TCCEEEECTTSSSSCSGGG------TCS----------------EET-TT------- T ss_pred HHHHHHCCCCHHHHHHHHHHHH-CCCEEEEEECCCCCCCCEE------CCC----------------CCC-CC------- T ss_conf 5544411764377799999986-7987898302456785031------035----------------545-66------- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCC---E Q ss_conf 2117899999996689510013676410001279999999999996698899813433204058758999986784---8 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGE---E 263 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~---~ 263 (549) .. ........+..++ +.+++++.++.|..+..++.... +....++ + T Consensus 157 ~~-----------------------------~~~~~~~~l~~~~-~~~v~i~~~t~v~g~~d~~~~~~-v~~~~~~~~~~ 205 (493) T 1y56_A 157 NK-----------------------------DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFL-VPVVRGDKLIE 205 (493) T ss_dssp TE-----------------------------EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEE-EEEEETTEEEE T ss_pred CC-----------------------------CHHHHHHHHHHHH-HCCEEEEECCEEEEEEECCCEEE-EEEECCCCEEE T ss_conf 64-----------------------------1467899999886-47849997333567751474478-98852761389 Q ss_pred EEECEEEEECC Q ss_conf 97056899318 Q T0604 264 IKSRHVVLAVG 274 (549) Q Consensus 264 i~ad~VVlAtG 274 (549) |.++.|||||| T Consensus 206 I~ak~VIlATG 216 (493) T 1y56_A 206 ILAKRVVLATG 216 (493) T ss_dssp EEESCEEECCC T ss_pred EEEEEEEECCC T ss_conf 96406998134 No 138 >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Probab=99.00 E-value=2.2e-09 Score=75.65 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=30.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCC Q ss_conf 766898798799999999996599--08998358883 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEV 142 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~v 142 (549) .||||||||||||.||..|++.|. +|+|+|+.+.. T Consensus 2 ~kVvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~ 38 (438) T 1yqz_A 2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438) T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCC T ss_conf 9799988979999999999806989968999589986 No 139 >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Probab=98.99 E-value=5e-09 Score=73.34 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 668987987999999999965990899835888 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|||||+|+||+.+|..|++.|++|+|||+|.. T Consensus 7 dvIVVGsG~aG~v~A~~La~~g~~VLvLEaG~~ 39 (504) T 1n4w_A 7 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 39 (504) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 699979688999999999868692999957899 No 140 >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiation, alternative splicing; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Probab=98.99 E-value=2.1e-09 Score=75.75 Aligned_cols=143 Identities=17% Similarity=0.087 Sum_probs=70.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .-.||||||||||+.||+.|++.|.+|+|+|+......-.. ... .....+|.-|.+.. ....... T Consensus 9 ~yDvvIIG~GpAG~~AA~~a~~~G~~V~liE~~~~~~~~~~-~~~-lGGtCln~GCiPsK------------~l~~aa~- 73 (483) T 3dgh_A 9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGT-KWG-VGGTCVNVGCIPKK------------LMHQASL- 73 (483) T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTC-CCC-SSCHHHHHSHHHHH------------HHHHHHH- T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCC-CCCCCCCCCHHHHH------------HHHHHHH- T ss_conf 88889989688999999999978894999952566555465-587-73334427878789------------9999999- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECC----HHH----HHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE Q ss_conf 2117899999996689510013676410001----279----99999999999669889981343320405875899998 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTF----KLV----TMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL 258 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd----~~~----~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t 258 (549) .....+.+..+|.... .++.+-.. ... .+....+..+...++++..+.-. ...+..+. +.+ T Consensus 74 ---~~~~~~~~~~~G~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~~~-v~~ 142 (483) T 3dgh_A 74 ---LGEAVHEAAAYGWNVD----DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGS---FVDSHTLL-AKL 142 (483) T ss_dssp ---HHHHHHHHHHTTBCCC----CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEE---EEETTEEE-EEC T ss_pred ---HHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE---EEECCEEE-EEE T ss_conf ---9999988886493438----752566999999999999766667888875174345310699---97424167-773 Q ss_pred CC-CCEEEECEEEEECCC Q ss_conf 67-848970568993188 Q T0604 259 SN-GEEIKSRHVVLAVGH 275 (549) Q Consensus 259 ~~-g~~i~ad~VVlAtGh 275 (549) .. ...+.++.+|+|||. T Consensus 143 ~~~~~~~~~~~~iIATGs 160 (483) T 3dgh_A 143 KSGERTITAQTFVIAVGG 160 (483) T ss_dssp TTCCEEEEEEEEEECCCE T ss_pred CCCCEEEEEEEEEECCCC T ss_conf 367489983228984788 No 141 >2f5v_A Pyranose 2-oxidase; flavoprotein, rossmann-fold, PHBH-fold, GMC oxidoreductase, glutathion-reductase related fold, tetramer; HET: KBG FAD PG4; 1.41A {Peniophora SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1tzl_A* 1tt0_A* 2igk_A* 3k4b_A* 3bg6_A* 2f6c_A* 3k4m_A* 3bg7_A* 2igm_A* 3k4j_A* 2ign_A* 2igo_A* 3k4k_A* 3k4l_A* 3bly_A* 3k4c_A* 3fdy_A* 3k4n_A* Probab=98.98 E-value=1.6e-08 Score=70.21 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=33.3 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7677668987987999999999965990899835888 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ...-.+||||+|+||+.+|..|++.|++|+|||+|+. T Consensus 16 ~~~yD~IVVGsG~aG~v~A~rLae~g~~VLvLEaG~~ 52 (595) T 2f5v_A 16 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI 52 (595) T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9812789989658999999999748897999955779 No 142 >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Probab=98.98 E-value=2.5e-09 Score=75.29 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=33.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 7668987987999999999965990899835888321 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) -.|||||+|||||+||+.|++.|++|+|+|+.+.+|+ T Consensus 5 YDvvIIG~GpAGl~aA~~~~~~g~~V~liE~~~~~GG 41 (466) T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGG 41 (466) T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSH T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 8589989898999999999968996899963899677 No 143 >1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=98.96 E-value=5.4e-10 Score=79.40 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=65.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) .-.+||||||||||||.||..|++ +.+|+|+|+.+.... .++. + .... .+. T Consensus 6 ~~gkkVvIIG~G~AGl~aA~~l~~-~~~VtlIe~~~~~~~--------~~~~-l---~~~~-----~g~----------- 56 (367) T 1xhc_A 6 HHGSKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--------SKPM-L---SHYI-----AGF----------- 56 (367) T ss_dssp ---CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--------CSTT-H---HHHH-----TTS----------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCCCC--------CCCC-C---HHHH-----CCC----------- T ss_conf 998979999988999999999727-998899969886678--------7663-3---7986-----668----------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) .+.+.... ...+.+++.|++++.++.|+.+..+.. + ++.++.++ T Consensus 57 -----------------~~~~~~~~---------------~~~~~~~~~gi~~~~~~~v~~id~~~~-~---v~~~~~~i 100 (367) T 1xhc_A 57 -----------------IPRNRLFP---------------YSLDWYRKRGIEIRLAEEAKLIDRGRK-V---VITEKGEV 100 (367) T ss_dssp -----------------SCGGGGCS---------------SCHHHHHHHTEEEECSCCEEEEETTTT-E---EEESSCEE T ss_pred -----------------CCHHHHHH---------------HHHHHHHHCCCEEEECCEEEEECCCCC-C---CCCCCCCC T ss_conf -----------------88899756---------------349999977959998855531013532-1---01268742 Q ss_pred EECEEEEECCCC Q ss_conf 705689931887 Q T0604 265 KSRHVVLAVGHS 276 (549) Q Consensus 265 ~ad~VVlAtGhs 276 (549) .+|.+|+|+|.+ T Consensus 101 ~yd~lviAtG~~ 112 (367) T 1xhc_A 101 PYDTLVLATGAR 112 (367) T ss_dssp ECSEEEECCCEE T ss_pred CCCCCCCCCCCC T ss_conf 011123343221 No 144 >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* Probab=98.96 E-value=7.2e-10 Score=78.64 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=39.1 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC Q ss_conf 76776689879879999999999659908998358883211010 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKD 148 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~ 148 (549) +..-.|||||||||||.||+.|+++|++|+|||+.+.+|++.++ T Consensus 27 ~~~yDviIIGaG~sGL~aA~~L~k~G~~V~v~Ek~~~iGG~~~t 70 (397) T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397) T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE T ss_conf 78899999997289999999999689947999788976061688 No 145 >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Probab=98.95 E-value=2.4e-09 Score=75.30 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=66.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 677668987987999999999965--990899835888321101000124354236023455413556521240455322 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~--G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ....|+|||||||||+||+.|+++ |++|+|+|++..+++..... +.+ ++...+ T Consensus 64 ~~~dv~ivg~g~ag~~~a~~~~k~~~~~~v~~~ek~~~~GG~~~~g------g~~---------------~~~~~~---- 118 (326) T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG------GQL---------------FSAMVM---- 118 (326) T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC------GGG---------------CCCEEE---- T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECC------CEE---------------CCHHHH---- T ss_conf 4899899997789999999999848998599980477785077648------996---------------788899---- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCE Q ss_conf 000211789999999668951001367641000127999999999999669889981343320405875 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQ 252 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~ 252 (549) .......+.++|.+.+.... -....+........+...+...|+++...+.+.++...++. T Consensus 119 ------~~~~~~~l~~~gv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Gv~i~~~~~~~d~~~~~~~ 179 (326) T 2gjc_A 119 ------RKPAHLFLQELEIPYEDEGD--YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPT 179 (326) T ss_dssp ------ETTTHHHHHHTTCCCEECSS--EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC T ss_pred ------HHHHHHHHHHCCCEEEECCC--CCEEEEEEEEECCCCHHHCCCCCCEEEECCCEEEEEECCCC T ss_conf ------89999999986977998588--62455678885110522315587247601021778852786 No 146 >2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Probab=98.94 E-value=1.4e-09 Score=76.81 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=34.5 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 87767766898798799999999996599089983588832 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) |+...-.||||||||||+.||..|++.|.+|+|+|+..... T Consensus 22 p~~~dYDvvIIG~GpAG~~AA~~aa~~g~kV~liE~~~~~~ 62 (513) T 2zzc_A 22 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTP 62 (513) T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCT T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 97589998998968899999999996899699995257656 No 147 >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Probab=98.94 E-value=1.1e-09 Score=77.52 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=37.8 Q ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCC Q ss_conf 776689879879999999999-6599089983588832110100 Q T0604 107 TERPIVIGFGPCGLFAGLVLA-QMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La-~~G~~V~VlErg~~vg~r~~~~ 149 (549) +-.|||||||+|||+||+.|+ +.|++|+|+|+.+.+|++..+. T Consensus 7 k~dvvIIGaG~sGL~aA~~L~~~~g~~V~l~Ek~~~~GG~~~t~ 50 (399) T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE 50 (399) T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 79999999509999999999986899779997999772733067 No 148 >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A* Probab=98.92 E-value=2.7e-08 Score=68.75 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=31.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCCC Q ss_conf 77668987987999999999965990-8998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFN-PIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~-V~VlErg~~v 142 (549) .-.|||||+||||+.||+.+++.|.+ |+|+|+.... T Consensus 3 ~YDvvVIG~GpaG~~aA~~aa~~G~k~V~vie~~~~~ 39 (490) T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH 39 (490) T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCC T ss_conf 1798999978899999999997799889999732455 No 149 >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Probab=98.89 E-value=1.3e-09 Score=77.04 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=38.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 766898798799999999996599089983588832110100 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) ..|||||||+|||+||+.|++.|++|+|+|+.+.+|++..+. T Consensus 2 ~dviIIGaG~sGl~~A~~L~~~g~~V~v~Ek~~~iGG~~~t~ 43 (367) T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTE 43 (367) T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 769998976899999999997899889998899874725777 No 150 >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} Probab=98.88 E-value=1.2e-08 Score=71.04 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 766898798799999999996599089983588 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) -.|||||+|||||.||+.|++.|.+|+|+|++. T Consensus 9 ~DvvIIG~GpAGl~aA~~aa~~G~kV~liEk~~ 41 (492) T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA 41 (492) T ss_dssp EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 798998888899999999982959899991699 No 151 >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=98.87 E-value=1.7e-08 Score=70.06 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=66.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 776689879879999999999659--908998358883211010001243542360234554135565212404553220 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) .+||||||||+|||.||..|++.+ .+|+|+|+.+... .+ +.+.... .+.. T Consensus 2 ~kkvVIvGgG~aGl~~A~~L~~~~~~~~Itlie~~~~~~----------~~----p~~~~~~----~g~~---------- 53 (401) T 1fcd_A 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYY----------TC----YLSNEVI----GGDR---------- 53 (401) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEE----------CS----TTHHHHH----HTSS---------- T ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC----------CC----CCHHHHH----CCCC---------- T ss_conf 898999996199999999997009399689991898775----------54----3289996----4888---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) -+.++. .| . +.+...|++++.+ +|++|..++..| .+.+++++ T Consensus 54 -----------------~~~~~~---~~------~--------~~~~~~gv~~i~~-~v~~ID~~~~~V---~~~~~~~~ 95 (401) T 1fcd_A 54 -----------------KLESIK---HG------Y--------DGLRAHGIQVVHD-SATGIDPDKKLV---KTAGGAEF 95 (401) T ss_dssp -----------------CGGGGE---EC------S--------HHHHTTTEEEECC-CEEECCTTTTEE---EETTSCEE T ss_pred -----------------CHHHHH---CC------H--------HHHHHCCCEEEEE-EEEEEECCCCEE---EECCCCEE T ss_conf -----------------999951---48------9--------9998789899943-479998888788---50676445 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) ..|++|+|||- T Consensus 96 ~YD~LViAtGs 106 (401) T 1fcd_A 96 GYDRCVVAPGI 106 (401) T ss_dssp ECSEEEECCCE T ss_pred EEEEEEECCCC T ss_conf 50368964776 No 152 >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Probab=98.83 E-value=2.8e-09 Score=74.94 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=36.8 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCCCC Q ss_conf 877677668987987999999999965990--899835888321 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFN--PIIVERGKEVRE 144 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~--V~VlErg~~vg~ 144 (549) ++..+.||+|||||||||.||+.|+++|++ |+||||.+.+|+ T Consensus 2 ~~~~~~~IAIIGaGPaGl~aA~~la~~G~~~~V~iiEk~~~~GG 45 (460) T 1cjc_A 2 TQEQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45 (460) T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCE T ss_conf 98769969998977899999999985899985999836999853 No 153 >2yr5_A Pro-enzyme of L-phenylalanine oxidase; amino oxidase, flavoenzyme, oxidoreductase; HET: FAD; 1.25A {Pseudomonas SP} PDB: 2yr4_A* 2yr6_A* Probab=98.73 E-value=4.2e-09 Score=73.81 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=38.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--------EEEEEECCC-----------------CCCCCCCCC Q ss_conf 67766898798799999999996599--------089983588-----------------832110100 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--------NPIIVERGK-----------------EVRERTKDT 149 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--------~V~VlErg~-----------------~vg~r~~~~ 149 (549) ...||+|||||+|||+||+.|.+.|+ +|+|||..+ .+|+|.... T Consensus 55 ~~~rVaIIGAGiAGL~AA~eL~~~G~~~~~~~~~~VtVlEAsd~~~~~~~~~~~~~~~~~RiGGRi~T~ 123 (721) T 2yr5_A 55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAA 123 (721) T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 998699989848999999999876995444677876999346865655322333455677245620238 No 154 >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Probab=98.68 E-value=8.6e-09 Score=71.89 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=33.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CEEEEEECCCCCCC Q ss_conf 76689879879999999999659-------90899835888321 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMG-------FNPIIVERGKEVRE 144 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G-------~~V~VlErg~~vg~ 144 (549) .||+|||||||||+||+.|+++| ++|+||||.+.+++ T Consensus 4 ~kVaIIGaGPAGl~aA~~l~~~g~~~~~~~~~V~ifE~~~~pGG 47 (456) T 1lqt_A 4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 47 (456) T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC T ss_conf 73999997889999999998757854357970899926997888 No 155 >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, disulfide oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Probab=98.63 E-value=1.7e-08 Score=70.03 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=65.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 67766898798799999999996599089983588832110100012435423602345541355652124045532200 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) ...+|+|||||||||+||+.|++.|++|+|||+....+... ++.+ .....- T Consensus 7 ~~~dVvIIGgGpAGlsaA~~l~~~g~~v~vie~~~~~~~~~--------gg~~---------------------~~~~~~ 57 (333) T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAP--------GGQL---------------------TTTTDV 57 (333) T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCT--------TCGG---------------------GGCSEE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--------CCEE---------------------CCCCCC T ss_conf 69879999976999999999998899889994367678654--------7675---------------------502431 Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEE Q ss_conf 02117899999996689510013676410001279999999999996698899813433204058758999986784897 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ 265 (549) ... .|.+ ... ................+... ....++.+........ .+.+...+. T Consensus 58 ~~~-----------~g~~-------~~~----~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~--~~~~~~~~~ 112 (333) T 1vdc_A 58 ENF-----------PGFP-------EGI----LGVELTDKFRKQSERFGTTI-FTETVTKVDFSSKPFK--LFTDSKAIL 112 (333) T ss_dssp CCS-----------TTCT-------TCE----EHHHHHHHHHHHHHHTTCEE-ECCCCCEEECSSSSEE--EECSSEEEE T ss_pred CCC-----------CCCC-------CCC----CCHHHHHHHHHHHHCCCCCC-CCEEEEEEECCCCCCE--EECCCCEEE T ss_conf 224-----------6674-------012----62889999887553137521-3126999983465311--204773378 Q ss_pred ECEEEEECCC Q ss_conf 0568993188 Q T0604 266 SRHVVLAVGH 275 (549) Q Consensus 266 ad~VVlAtGh 275 (549) ...++++++. T Consensus 113 ~~~~~~~~~~ 122 (333) T 1vdc_A 113 ADAVILAIGA 122 (333) T ss_dssp EEEEEECCCE T ss_pred EEEEEEEEEC T ss_conf 7654321000 No 156 >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, structural genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Probab=98.60 E-value=6.5e-07 Score=60.10 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=72.7 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 87767766898798799999999996599089983588832110100012435423602345541355652124045532 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQ 182 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~ 182 (549) ..-..++|+|||+|..|+.+|..|++.|.+|++++|++..... ... T Consensus 162 ~~~~~k~vvVIG~G~sg~e~A~~l~~~g~~Vtl~~r~~~~~~~---------------~~~------------------- 207 (369) T 3d1c_A 162 DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP---------------DAD------------------- 207 (369) T ss_dssp GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------------- T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC---------------CCC------------------- T ss_conf 0168976799897679999999999609989999768844565---------------545------------------- Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHH-CCCEEEEECCCCCCEECCCEEEEEEECCC Q ss_conf 20002117899999996689510013676410001279999999999996-69889981343320405875899998678 Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIE-LGGEIRFSTRVDDLHMEDGQITGVTLSNG 261 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~-~G~~i~~~t~V~~i~~~~g~v~gV~t~~g 261 (549) .... ..+.+.+.+...+.+ .+++++.++.++.+..+++.+. |.+.+| T Consensus 208 ---~~~~----------------------------~~~~~~~~~~~~~~~g~~i~~~~~~~v~~i~~~~~~~~-v~~~~g 255 (369) T 3d1c_A 208 ---PSVR----------------------------LSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYH-ISFDSG 255 (369) T ss_dssp ---CTTS----------------------------CCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEE-EEESSS T ss_pred ---HHHH----------------------------HHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEE-EEECCC T ss_conf ---1233----------------------------10778999999998188826861544999992398899-998798 Q ss_pred CEE-EECEEEEECCCCH Q ss_conf 489-7056899318876 Q T0604 262 EEI-KSRHVVLAVGHSA 277 (549) Q Consensus 262 ~~i-~ad~VVlAtGhsa 277 (549) +.. ..+.+|+|+|... T Consensus 256 ~~~~~~d~vi~atG~~~ 272 (369) T 3d1c_A 256 QSVHTPHEPILATGFDA 272 (369) T ss_dssp CCEEESSCCEECCCBCG T ss_pred EEEEECCEEEEEEEEEC T ss_conf 69996689999999858 No 157 >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A* Probab=98.60 E-value=1.5e-07 Score=64.17 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=79.7 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH Q ss_conf 7767766898798799999999996---5990899835888321101000124354236023455413556521240455 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQ---MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY 180 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~---~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~ 180 (549) ...+++++|||+|+.|+..|..++. .|.+|+|+|+.+.+..+ + T Consensus 184 ~~~pk~v~IIGgG~iG~E~A~~~~~~~~lG~~Vtlie~~~~iL~~----------------------------~------ 229 (490) T 1fec_A 184 DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG----------------------------F------ 229 (490) T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT----------------------------S------ T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC----------------------------C------ T ss_conf 437853899931620266889988761378679999851234865----------------------------5------ Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC Q ss_conf 32200021178999999966895100136764100012799999999999966988998134332040587589999867 Q T0604 181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN 260 (549) Q Consensus 181 t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~ 260 (549) | +.+.+.+.+.+.+.|++++++++++.+..+++.+..+...+ T Consensus 230 ----D----------------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~~~~~~~~~~~~~~~~ 271 (490) T 1fec_A 230 ----D----------------------------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFES 271 (490) T ss_dssp ----C----------------------------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETT T ss_pred ----C----------------------------------HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCEEEEEEC T ss_conf ----9----------------------------------99999999878861921412626789997079715899722 Q ss_pred CCEEEECEEEEECCC Q ss_conf 848970568993188 Q T0604 261 GEEIKSRHVVLAVGH 275 (549) Q Consensus 261 g~~i~ad~VVlAtGh 275 (549) ++++++|.|++|+|. T Consensus 272 ~~~~~~D~vl~a~Gr 286 (490) T 1fec_A 272 GAEADYDVVMLAIGR 286 (490) T ss_dssp SCEEEESEEEECSCE T ss_pred CCCCCCCEEEEECCC T ss_conf 663346779994475 No 158 >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Probab=98.55 E-value=1.4e-06 Score=57.97 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=70.1 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|+.|+.+|..+++.|.+|+|+||++.+... + T Consensus 183 ~~pk~vvIIGgG~ig~E~A~~l~~lG~~Vtlv~~~~~l~~~----------------------------~---------- 224 (479) T 2hqm_A 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK----------------------------F---------- 224 (479) T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT----------------------------S---------- T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCC----------------------------C---------- T ss_conf 26997999899889999999999759979999930655765----------------------------4---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECC--CEEEEEEECCCC Q ss_conf 002117899999996689510013676410001279999999999996698899813433204058--758999986784 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGE 262 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~--g~v~gV~t~~g~ 262 (549) -..+...+.+++.+.++.+.+...++.+...+ ..+......+.. T Consensus 225 ----------------------------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479) T 2hqm_A 225 ----------------------------------DECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKS 270 (479) T ss_dssp ----------------------------------CHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCE T ss_pred ----------------------------------CHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCEEEECCCCCE T ss_conf ----------------------------------3777888887665214489732148999941431100110266522 Q ss_pred EEEECEEEEECC Q ss_conf 897056899318 Q T0604 263 EIKSRHVVLAVG 274 (549) Q Consensus 263 ~i~ad~VVlAtG 274 (549) .+++|.|++|+| T Consensus 271 ~~~~D~vl~a~G 282 (479) T 2hqm_A 271 IDDVDELIWTIG 282 (479) T ss_dssp EEEESEEEECSC T ss_pred EEEEEEEEEEEE T ss_conf 565679999802 No 159 >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Probab=98.54 E-value=2e-06 Score=57.01 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=74.6 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++++|||+|..|+.+|..|++.|.+|+++++.+.+... +.| T Consensus 192 ~~~~~vvViGgG~~g~e~a~~l~~~g~~Vtlv~~~~~~~~~----------------------------~~d-------- 235 (490) T 2bc0_A 192 KDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG----------------------------YYD-------- 235 (490) T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------------------------TSC-------- T ss_pred CCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC----------------------------CCC-------- T ss_conf 58856999865000000011112346422222246532233----------------------------465-------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) +.+.+.+.+.+.+.|++++++++|+.+..++. +. +...+++++ T Consensus 236 -----------------------------------~~~~~~~~~~l~~~GI~i~~~~~v~~v~~~~~-~~-~~~~~g~~i 278 (490) T 2bc0_A 236 -----------------------------------RDLTDLMAKNMEEHGIQLAFGETVKEVAGNGK-VE-KIITDKNEY 278 (490) T ss_dssp -----------------------------------HHHHHHHHHHHHTTTCEEEETCCEEEEECSSS-CC-EEEESSCEE T ss_pred -----------------------------------CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC-CC-CCCCCCCCC T ss_conf -----------------------------------11345667765212220115747889840222-11-112466544 Q ss_pred EECEEEEECCCC Q ss_conf 705689931887 Q T0604 265 KSRHVVLAVGHS 276 (549) Q Consensus 265 ~ad~VVlAtGhs 276 (549) ++|.|++|+|.. T Consensus 279 ~~D~vl~a~G~~ 290 (490) T 2bc0_A 279 DVDMVILAVGFR 290 (490) T ss_dssp ECSEEEECCCEE T ss_pred CCCCCCCCCCCC T ss_conf 310002323556 No 160 >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus PY2} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* Probab=98.49 E-value=1.8e-06 Score=57.29 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=72.6 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++|+|||+|+.|+.+|..+++.|.+|+++++.+..... + T Consensus 212 ~~~k~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~l~~----------------------------~---------- 253 (523) T 1mo9_A 212 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI----------------------------K---------- 253 (523) T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC----------------------------C---------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHC----------------------------C---------- T ss_conf 89988999888676777898765337531110124454320----------------------------0---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCC-EEEEE--EECCC Q ss_conf 0021178999999966895100136764100012799999999999966988998134332040587-58999--98678 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDG-QITGV--TLSNG 261 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g-~v~gV--~t~~g 261 (549) ...+...+...+.+.|+.++.++.++.+..++. ....+ .+.++ T Consensus 254 ----------------------------------~~~~~~~~~~~~~~~gv~i~~~~~~~~~~~~~~g~~~~v~~~~~~~ 299 (523) T 1mo9_A 254 ----------------------------------DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG 299 (523) T ss_dssp ----------------------------------SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE T ss_pred ----------------------------------CCHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCEEEEEEECCCC T ss_conf ----------------------------------1002344432000121379843326898872798479999871898 Q ss_pred -CEEEECEEEEECCCCHH Q ss_conf -48970568993188767 Q T0604 262 -EEIKSRHVVLAVGHSAR 278 (549) Q Consensus 262 -~~i~ad~VVlAtGhsar 278 (549) .+++||.|++|+|.... T Consensus 300 ~~~i~~D~Vl~a~G~~Pn 317 (523) T 1mo9_A 300 EMRIETDFVFLGLGEQPR 317 (523) T ss_dssp EEEEECSCEEECCCCEEC T ss_pred CEEEEEEEEEEEECCCCC T ss_conf 289997777776155358 No 161 >2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein, oxidoreductase, chimeric enzyme, thiol-mediated detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma mansoni} PDB: 3h4k_A* Probab=98.46 E-value=3.7e-06 Score=55.35 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=67.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 67766898798799999999996599089983588832110100012435423602345541355652124045532200 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) .+++|+|||+|..|+.+|..|++.|.+|+|+||..... T Consensus 285 ~pk~vvVIGgG~iglE~A~~l~~lG~~Vtvi~r~~~L~------------------------------------------ 322 (596) T 2v6o_A 285 FPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLR------------------------------------------ 322 (596) T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSST------------------------------------------ T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCC------------------------------------------ T ss_conf 69809998998999999999998699689997862244------------------------------------------ Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEC------C--CEE--EE Q ss_conf 0211789999999668951001367641000127999999999999669889981343320405------8--758--99 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME------D--GQI--TG 255 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~------~--g~v--~g 255 (549) .+. ..+.+.+.+.+++.|++++.++.++.+... + ..+ .. T Consensus 323 -~~D------------------------------~~~~~~l~~~l~~~GI~i~~~~~v~~~~~~~~~~~e~~~~~~~~~~ 371 (596) T 2v6o_A 323 -GFD------------------------------QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVK 371 (596) T ss_dssp -TSC------------------------------HHHHHHHHHHHHTTTEEEETTEEEEEEEEEECCBTTTTBCCEEEEE T ss_pred -CCC------------------------------HHHHHHHHHHHHHCCEEEEEEEEEEEEEEEEEEEEEECCCEEEEEE T ss_conf -422------------------------------5778889999986391898511421344335789871442068888 Q ss_pred EEECCCC--EEEECEEEEECCC Q ss_conf 9986784--8970568993188 Q T0604 256 VTLSNGE--EIKSRHVVLAVGH 275 (549) Q Consensus 256 V~t~~g~--~i~ad~VVlAtGh 275 (549) ....+|+ ++++|.|++|+|. T Consensus 372 ~~~~~G~~~~i~~D~V~vaiG~ 393 (596) T 2v6o_A 372 GHYTDGKKFEEEFETVIFAVGR 393 (596) T ss_dssp EEETTSCEEEEEESEEEECSCE T ss_pred EEECCCCEEEEEECEEEEECCC T ss_conf 8816895799970699995576 No 162 >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Probab=98.46 E-value=1.5e-07 Score=64.07 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=37.5 Q ss_pred CEEEECCCHHHHHHHHHHH-----HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 6689879879999999999-----6599089983588832110100012435423602345541 Q T0604 109 RPIVIGFGPCGLFAGLVLA-----QMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFG 167 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La-----~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g 167 (549) .|+||||||+||++|+.|+ ++|++|+||||.+...... +...+++.+...+. T Consensus 10 DVlIVGaGp~GL~lA~~La~~~~~r~Gi~v~viEr~~~~~~~~-------ra~~l~~~tle~L~ 66 (665) T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG-------QADGLQCRTLESLK 66 (665) T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSC-------SCCEECHHHHHHHH T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC-------EEEEECHHHHHHHH T ss_conf 9899893989999999987260213898789993899988788-------08998989999999 No 163 >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Probab=98.46 E-value=3.6e-06 Score=55.40 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=72.6 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++++|||+|+.|+.+|..|++.|.+|.++++.+....+ + T Consensus 147 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~v~~v~~~~~~~~~----------------------------~---------- 188 (447) T 1nhp_A 147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV----------------------------Y---------- 188 (447) T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------------------------T---------- T ss_pred CCCCEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCC----------------------------C---------- T ss_conf 58988999988710000120133058658999982632333----------------------------3---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) . .......+...+++.|++++.++.++.+..++... +...+++++ T Consensus 189 ----~-----------------------------~~~~~~~~~~~l~~~gi~~~~~~~v~~i~~~~~~~--~~~~~~~~i 233 (447) T 1nhp_A 189 ----L-----------------------------DKEFTDVLTEEMEANNITIATGETVERYEGDGRVQ--KVVTDKNAY 233 (447) T ss_dssp ----C-----------------------------CHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCC--EEEESSCEE T ss_pred ----C-----------------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCEE--EEECCCCCC T ss_conf ----2-----------------------------06677777654320046543100279997035147--884278643 Q ss_pred EECEEEEECCCC Q ss_conf 705689931887 Q T0604 265 KSRHVVLAVGHS 276 (549) Q Consensus 265 ~ad~VVlAtGhs 276 (549) ++|.|++|+|.. T Consensus 234 ~~D~vl~a~G~~ 245 (447) T 1nhp_A 234 DADLVVVAVGVR 245 (447) T ss_dssp ECSEEEECSCEE T ss_pred CCCCCEEECCCC T ss_conf 344311500246 No 164 >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiation, alternative splicing; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Probab=98.44 E-value=3.9e-06 Score=55.20 Aligned_cols=99 Identities=23% Similarity=0.260 Sum_probs=71.1 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|..|+..|..|++.|.+|+|++|.+... .+ T Consensus 184 ~~~Pk~v~VIGgG~ig~E~A~~l~~lG~~Vtli~r~~~l~-----------------------------~~--------- 225 (483) T 3dgh_A 184 DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR-----------------------------GF--------- 225 (483) T ss_dssp SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST-----------------------------TS--------- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC-----------------------------CC--------- T ss_conf 2279659999977999999999986599369997165456-----------------------------55--------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE----- Q ss_conf 000211789999999668951001367641000127999999999999669889981343320405875899998----- Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL----- 258 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t----- 258 (549) -..+...+...+...++.+++++.+..+...++....+.. T Consensus 226 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (483) T 3dgh_A 226 -----------------------------------DQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVET 270 (483) T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTT T ss_pred -----------------------------------CHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCEEEEEEECCC T ss_conf -----------------------------------546799999999973803214616899998279835776420146 Q ss_pred CCCCEEEECEEEEECCC Q ss_conf 67848970568993188 Q T0604 259 SNGEEIKSRHVVLAVGH 275 (549) Q Consensus 259 ~~g~~i~ad~VVlAtGh 275 (549) .+++++++|.|++|+|. T Consensus 271 ~~~~~~~~D~vl~a~Gr 287 (483) T 3dgh_A 271 GEESEDVYDTVLWAIGR 287 (483) T ss_dssp CCEEEEEESEEEECSCE T ss_pred CCCEEEEEEEEEEEEEC T ss_conf 76237875007999513 No 165 >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3ljp_A* Probab=98.40 E-value=2.3e-07 Score=62.92 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.3 Q ss_pred CCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCC Q ss_conf 766898798799999999996-5990899835888 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE 141 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~ 141 (549) -.|||||+|++|..+|..|++ .|++|+|||+|+. T Consensus 14 yDvIIVGsG~~G~v~A~rLae~~g~~VlvLE~G~~ 48 (546) T 2jbv_A 14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD 48 (546) T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 33899896489999999997686986999846899 No 166 >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, peroxisome; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Probab=98.36 E-value=8.8e-08 Score=65.55 Aligned_cols=52 Identities=10% Similarity=-0.058 Sum_probs=36.6 Q ss_pred EECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHH Q ss_conf 00012799999999999966988998134332040587589999867848970568993188767 Q T0604 214 IGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549) Q Consensus 214 ~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsar 278 (549) -+......++..|.+.+...++++...+.+..... ..+.++.+|.|+|..++ T Consensus 136 ~~~v~p~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~~v~~~G~~~~ 187 (351) T 3g3e_A 136 SLILEGKNYLQWLTERLTERGVKFFQRKVESFEEV-------------AREGADVIVNCTGVWAG 187 (351) T ss_dssp EEEECHHHHHHHHHHHHHHTTCEEEECCCCCHHHH-------------HHTTCSEEEECCGGGGG T ss_pred CEEECCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-------------CCCCEEEEEECCCCCCC T ss_conf 77985078778888776504404898665201234-------------45420123321422412 No 167 >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8} Probab=98.33 E-value=2.6e-06 Score=56.30 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=68.3 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++|+|||+|+.|+.+|..|++.|.+|.+++|++.... . T Consensus 150 ~~~~~vvViG~G~~~~e~A~~l~~~~~~V~~i~~~~~~~~-------------------------------~-------- 190 (335) T 2zbw_A 150 FQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA-------------------------------H-------- 190 (335) T ss_dssp GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS-------------------------------C-------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCHHH-------------------------------H-------- T ss_conf 3798899999872499999998724988999997350323-------------------------------4-------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC--C-- Q ss_conf 002117899999996689510013676410001279999999999996698899813433204058758999986--7-- Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS--N-- 260 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~--~-- 260 (549) ......+.+.+...|+++++++.|+.+..+++....+... + T Consensus 191 -----------------------------------~~~~~~~~~~~~~~gi~i~~~~~v~~i~~~~~~~~~~~~~~~~g~ 235 (335) T 2zbw_A 191 -----------------------------------EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQE 235 (335) T ss_dssp -----------------------------------HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCC T ss_pred -----------------------------------HHHHHHHHHHHHHCCEEEEECCEEEEEECCCCEEEEEEEECCCCC T ss_conf -----------------------------------677899999987476799927677899636873678998526785 Q ss_pred CCEEEECEEEEECCC Q ss_conf 848970568993188 Q T0604 261 GEEIKSRHVVLAVGH 275 (549) Q Consensus 261 g~~i~ad~VVlAtGh 275 (549) +.+++||.||+|+|. T Consensus 236 ~~~i~~D~vi~a~G~ 250 (335) T 2zbw_A 236 ELALEVDAVLILAGY 250 (335) T ss_dssp EEEEECSEEEECCCE T ss_pred EEEEECCEEEEEEEC T ss_conf 599852889998603 No 168 >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} Probab=98.31 E-value=1.1e-05 Score=52.40 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=74.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++|+|||+|+.|+..|..+++.|.+++++++......+. + T Consensus 146 ~~~~~vvViGgG~~g~E~A~~l~~~g~~v~~i~~~~~~~~~~---------------------------~---------- 188 (449) T 3kd9_A 146 YKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS---------------------------F---------- 188 (449) T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT---------------------------S---------- T ss_pred CCCCEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC---------------------------C---------- T ss_conf 023204316788527778899875287431686323345553---------------------------3---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) . .....+.......++.++.++.+..+...+... +...++.++ T Consensus 189 -----~------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~~~~~i 231 (449) T 3kd9_A 189 -----D------------------------------KEVTDILEEKLKKHVNLRLQEITMKIEGEERVE--KVVTDAGEY 231 (449) T ss_dssp -----C------------------------------HHHHHHHHHHHTTTSEEEESCCEEEEECSSSCC--EEEETTEEE T ss_pred -----C------------------------------CCHHHHHHHHCCEEEEEEECCEEEEEECCCCCE--EECCCCCEE T ss_conf -----2------------------------------210222221022024565221378872234411--101347448 Q ss_pred EECEEEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 7056899318876799999996697111 Q T0604 265 KSRHVVLAVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 265 ~ad~VVlAtGhsard~~~~l~~~Gi~~~ 292 (549) ++|.|++|+|..... .+|...|+.+. T Consensus 232 ~~D~vl~a~G~~pn~--~~l~~~gl~~~ 257 (449) T 3kd9_A 232 KAELVILATGIKPNI--ELAKQLGVRIG 257 (449) T ss_dssp ECSEEEECSCEEECC--HHHHHTTCCBC T ss_pred ECCCCCCCCCCCCCC--CCCCCCCEEEE T ss_conf 313222022445676--41224765870 No 169 >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I; coenzyme A, flavin adenine dinucleotide, selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Probab=98.28 E-value=1.1e-05 Score=52.45 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=73.4 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++|+|||+|+.|+.+|..+++.|.+|+++++++.... .+ T Consensus 184 ~~~~~vvviGgg~~~~e~a~~~~~~~~~vtlv~~~~~~l~----------------------------~~---------- 225 (480) T 3cgb_A 184 NKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT----------------------------IY---------- 225 (480) T ss_dssp SCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS----------------------------SS---------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCC----------------------------CC---------- T ss_conf 6897799989837777789887524763279986203344----------------------------22---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) ...+.+.+.+.+++.|++++++++++.+..++ .+. +...++.++ T Consensus 226 ----------------------------------~~~~~~~l~~~l~~~gI~~~~~~~v~~i~~~~-~~~-~~~~~~~~i 269 (480) T 3cgb_A 226 ----------------------------------DGDMAEYIYKEADKHHIEILTNENVKAFKGNE-RVE-AVETDKGTY 269 (480) T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-BEE-EEEETTEEE T ss_pred ----------------------------------CHHHHHHHHHHHHCCCEEEECCCEEEEEECCC-EEE-EEECCCCEE T ss_conf ----------------------------------03455421101201425862373589996431-179-984036501 Q ss_pred EECEEEEECCCCH Q ss_conf 7056899318876 Q T0604 265 KSRHVVLAVGHSA 277 (549) Q Consensus 265 ~ad~VVlAtGhsa 277 (549) ++|.|++|+|... T Consensus 270 ~~D~vl~a~G~~P 282 (480) T 3cgb_A 270 KADLVLVSVGVKP 282 (480) T ss_dssp ECSEEEECSCEEE T ss_pred CCCEEEECCCCCC T ss_conf 2467999236401 No 170 >1cf3_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.90A {Aspergillus niger} SCOP: c.3.1.2 d.16.1.1 PDB: 1gal_A* Probab=98.28 E-value=5.6e-07 Score=60.52 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCCC Q ss_conf 7766898798799999999996-599089983588832 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVR 143 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~vg 143 (549) .-.|||||+|+||+.+|..||+ .|++|+|||+|.... T Consensus 19 ~yDviVVGsG~aG~vlA~rLae~~g~~VlvLE~G~~~~ 56 (583) T 1cf3_A 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYES 56 (583) T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCT T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCC T ss_conf 76799989668999999999768898099988899986 No 171 >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Probab=98.26 E-value=8.9e-07 Score=59.24 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCC Q ss_conf 776689879879999999999659-908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG-FNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G-~~V~VlErg~~v 142 (549) .-.|||||+|+||+..|..|++.| ++|+|||+|... T Consensus 24 ~YD~vIVGsG~aG~~~A~rLs~~~~~~VlvLE~G~~~ 60 (587) T 1gpe_A 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587) T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 2028998968899999999987889859999068998 No 172 >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Probab=98.20 E-value=5.3e-07 Score=60.65 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=30.4 Q ss_pred CEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCC Q ss_conf 66898798799999999996-5990899835888 Q T0604 109 RPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~ 141 (549) .|||||+|++|+.+|..|++ .|++|+|||+|+. T Consensus 4 DviIVGsG~~G~~~A~~La~~~g~~VlvLE~G~~ 37 (566) T 3fim_B 4 DYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS 37 (566) T ss_dssp EEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBC T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 8799896489999999997687987999848899 No 173 >2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Probab=98.19 E-value=6e-05 Score=47.77 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=67.9 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|..|+..|..|++.|.+|+|+||..... .| | T Consensus 201 ~~~pk~vvVIGgG~ig~E~A~~l~~lG~~Vtli~r~~~L~-----------------------------~~-D------- 243 (513) T 2zzc_A 201 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-----------------------------GF-D------- 243 (513) T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-----------------------------TS-C------- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-----------------------------CC-C------- T ss_conf 0089769998987989999999997099699997476555-----------------------------44-9------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEC----CCEEEEEEEC Q ss_conf 000211789999999668951001367641000127999999999999669889981343320405----8758999986 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME----DGQITGVTLS 259 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~----~g~v~gV~t~ 259 (549) +.+.+.+.+.+++.++.++.+..++.+... .+....+... T Consensus 244 ------------------------------------~e~~~~l~~~l~~~gi~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 287 (513) T 2zzc_A 244 ------------------------------------QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQS 287 (513) T ss_dssp ------------------------------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECSTTCEEEEEEEE T ss_pred ------------------------------------HHHHHHHHHHHHHHCCEEECCCCEEEEEEEEECCCCEEEEEEEE T ss_conf ------------------------------------99999999999861433311452157999640456506999950 Q ss_pred ----CCCEEEECEEEEECCC Q ss_conf ----7848970568993188 Q T0604 260 ----NGEEIKSRHVVLAVGH 275 (549) Q Consensus 260 ----~g~~i~ad~VVlAtGh 275 (549) ++.++++|.|++|+|. T Consensus 288 ~~~~~~~~~~~D~VlvaiGr 307 (513) T 2zzc_A 288 TNSEEIIEGEYNTVMLAIGR 307 (513) T ss_dssp SSSSCEEEEEESEEEECSCE T ss_pred CCCEEEEEECCCEEEEEECC T ss_conf 44101110013226898646 No 174 >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Probab=98.07 E-value=1.6e-06 Score=57.65 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=31.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +-.|||||+|+||+.+|..|++. ++|+|||+|+.. T Consensus 26 ~yD~IIVGsG~aG~v~A~rLse~-~kVLvLE~G~~~ 60 (536) T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP 60 (536) T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCC T ss_conf 63579989538999999998579-948999158898 No 175 >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green chemistry, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* Probab=97.94 E-value=0.00026 Score=43.75 Aligned_cols=37 Identities=24% Similarity=0.082 Sum_probs=33.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7677668987987999999999965990899835888 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) -..+||+|||+|.+|.-.+-.|++.+.+|.++=|.+. T Consensus 176 ~~gKrV~VIG~G~Sa~qi~~~la~~a~~v~v~~Rsp~ 212 (540) T 3gwf_A 176 LAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540) T ss_dssp CTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCC T ss_conf 1566227983143321357898753141223652475 No 176 >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} Probab=97.89 E-value=0.00018 Score=44.79 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.2 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776776689879879999999999659908998358883 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ...+++|+|||+|+.|+.+|..+++.|.+|+|+||.+.+ T Consensus 171 ~~~pk~vvIIGgG~ig~E~A~~l~~~G~~Vtli~r~~~~ 209 (492) T 3ic9_A 171 NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV 209 (492) T ss_dssp SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEECCC T ss_conf 436975999736643016779898569778998740456 No 177 >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 Probab=97.88 E-value=0.0004 Score=42.62 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=33.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ..+||+|||+|.+|+-.|..|++.+.+|.++-|.+. T Consensus 185 ~gK~V~ViG~G~Sa~qi~~~l~~~a~~v~~~~R~p~ 220 (542) T 1w4x_A 185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 220 (542) T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCCC T ss_conf 787058983684232232666520541357605886 No 178 >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Probab=97.84 E-value=4.6e-05 Score=48.49 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=40.0 Q ss_pred EECCCCCCCCCCCCCCEEECCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4204887430268985420123533578-99999999999999999999752 Q T0604 496 CIKRGKDFQSVNLKGFYPAGEGAGYAGG-ILSAGIDGIKVAEAVARDIVAAM 546 (549) Q Consensus 496 ri~r~~tleS~~i~GLY~~GEgaGyagG-I~saa~~G~~~a~~i~~~~~~~~ 546 (549) .|..|+.||+ ++||+|.||+.+.|.+- ++.|+-.|-.||..+-++|...+ T Consensus 469 ~I~Vd~~~~T-svpgIyAaGDva~~p~kq~v~A~g~G~~AA~~a~~yL~~~~ 519 (521) T 1hyu_A 469 EIIIDAKCET-SVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK 519 (521) T ss_dssp CBCCCTTCBC-SSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHHHHS T ss_pred CEEECCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 4831959743-89999999958588873999999999999999999740258 No 179 >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* Probab=97.83 E-value=2.3e-05 Score=50.40 Aligned_cols=99 Identities=26% Similarity=0.347 Sum_probs=77.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) .++++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.. T Consensus 167 ~~pk~vvIiGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ll~---------------------------------------- 206 (464) T 2eq6_A 167 GLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP---------------------------------------- 206 (464) T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC---------------------------------------- T ss_conf 2988499999789999999999976992999965884421---------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC----- Q ss_conf 002117899999996689510013676410001279999999999996698899813433204058758999986----- Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS----- 259 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~----- 259 (549) .. -+.+.+.+.+.+++.|+++++++.|+++..+++.+. |++. T Consensus 207 --~~------------------------------d~~~~~~l~~~l~~~gI~~~~~~~v~~i~~~~~~~~-V~l~~~~~~ 253 (464) T 2eq6_A 207 --QG------------------------------DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLH-VRLEPAEGG 253 (464) T ss_dssp --TS------------------------------CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEE-EEEEETTCC T ss_pred --CC------------------------------CHHHHHHHHHHHHHCCCCCEECEEEEEEEECCCEEE-EEEEECCCC T ss_conf --14------------------------------899999999999864773010102589998289389-999986689 Q ss_pred CCCEEEECEEEEECCCC Q ss_conf 78489705689931887 Q T0604 260 NGEEIKSRHVVLAVGHS 276 (549) Q Consensus 260 ~g~~i~ad~VVlAtGhs 276 (549) +++++++|.|++|+|.. T Consensus 254 ~~~~i~~D~vi~a~G~~ 270 (464) T 2eq6_A 254 EGEEVVVDKVLVAVGRK 270 (464) T ss_dssp SCEEEEESEEEECSCEE T ss_pred CEEEEECCEEEECCCCC T ss_conf 70799929999957742 No 180 >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} Probab=97.80 E-value=3.1e-05 Score=49.60 Aligned_cols=101 Identities=25% Similarity=0.350 Sum_probs=76.3 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|..|+.+|..|++.|.+|+|+||.+.+..+ + | T Consensus 168 ~~~pk~vvVIGgG~iglE~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------~-D------- 211 (464) T 2a8x_A 168 RELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN----------------------------E-D------- 211 (464) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------------------S-C------- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC----------------------------C-C------- T ss_conf 248866899858747999999999669959999947865754----------------------------4-8------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC--C Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867--8 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN--G 261 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~--g 261 (549) +.+.+.+.+.+++.|+++++++.++.+...++........+ + T Consensus 212 ------------------------------------~~~~~~l~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (464) T 2a8x_A 212 ------------------------------------ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVA 255 (464) T ss_dssp ------------------------------------HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCE T ss_pred ------------------------------------HHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCC T ss_conf ------------------------------------67899999998755875334653100103321000110012455 Q ss_pred CEEEECEEEEECCCC Q ss_conf 489705689931887 Q T0604 262 EEIKSRHVVLAVGHS 276 (549) Q Consensus 262 ~~i~ad~VVlAtGhs 276 (549) +++++|.|++|+|.. T Consensus 256 ~~i~~D~Vl~a~G~~ 270 (464) T 2a8x_A 256 QELKAEKVLQAIGFA 270 (464) T ss_dssp EEEEESEEEECSCEE T ss_pred CEEECCEEEECCCCC T ss_conf 013312578857767 No 181 >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=97.77 E-value=3.2e-05 Score=49.47 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=72.5 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|+.|+.+|..|++.|.+|+|+|+++.+... + T Consensus 168 ~~~pk~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~----------------------------~--------- 210 (458) T 1lvl_A 168 KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT----------------------------Y--------- 210 (458) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------------------------S--------- T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC----------------------------H--------- T ss_conf 125995999998899999999999759979999837844431----------------------------0--------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) -..+.+.+.+.++..|+++++++.++.+........ +...++.+ T Consensus 211 -----------------------------------d~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (458) T 1lvl_A 211 -----------------------------------DSELTAPVAESLKKLGIALHLGHSVEGYENGCLLAN-DGKGGQLR 254 (458) T ss_dssp -----------------------------------CHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEE-CSSSCCCE T ss_pred -----------------------------------HHHHHHHHHCCCCCCCEEEEECCEEEEEECCCEEEE-ECCCCEEE T ss_conf -----------------------------------056654200100012149983646999945725899-64897057 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +++|.|++|+|. T Consensus 255 ~~~D~Vl~A~G~ 266 (458) T 1lvl_A 255 LEADRVLVAVGR 266 (458) T ss_dssp ECCSCEEECCCE T ss_pred EECCEEEEEECC T ss_conf 406989991273 No 182 >1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=97.77 E-value=9e-05 Score=46.66 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=66.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .++++|||+|+.|+..|..|++.|.+|+|+++.+.... + + T Consensus 143 ~~~~~vvG~G~~g~e~A~~l~~~g~~v~l~~~~~~~~~-----------------------------~-~---------- 182 (367) T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-----------------------------L-D---------- 182 (367) T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-----------------------------C-C---------- T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCC-----------------------------C-C---------- T ss_conf 64321346765431126668655872156431024435-----------------------------7-6---------- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) +.+.+.+.+.+++.|++++++++++++..+ . +.+ +++.+++ T Consensus 183 ---------------------------------~~~~~~~~~~l~~~Gv~~~~~~~v~~v~~~--~---~~~-~~~~~~~ 223 (367) T 1xhc_A 183 ---------------------------------EELSNMIKDMLEETGVKFFLNSELLEANEE--G---VLT-NSGFIEG 223 (367) T ss_dssp ---------------------------------HHHHHHHHHHHHHTTEEEECSCCEEEECSS--E---EEE-TTEEEEC T ss_pred ---------------------------------HHHHHHHHHHHHHCCCEEEEEEEEEEEECC--C---CCC-CCCCCCC T ss_conf ---------------------------------489999999998659715432468983023--4---321-1112344 Q ss_pred CEEEEECCCC Q ss_conf 5689931887 Q T0604 267 RHVVLAVGHS 276 (549) Q Consensus 267 d~VVlAtGhs 276 (549) |.||+|+|.. T Consensus 224 d~vi~a~G~~ 233 (367) T 1xhc_A 224 KVKICAIGIV 233 (367) T ss_dssp SCEEEECCEE T ss_pred CEEEEEECCC T ss_conf 2169995243 No 183 >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Probab=97.77 E-value=3.8e-05 Score=49.00 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=76.7 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ..++++|+|||+|+.|+..|..|++.|.+|+|+|+++.+... + T Consensus 177 ~~~pk~v~VvGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~----------------------------~--------- 219 (476) T 3lad_A 177 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA----------------------------V--------- 219 (476) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------------------------S--------- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC----------------------------C--------- T ss_conf 106972699687799999999999759979999847755776----------------------------5--------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEEC--CC Q ss_conf 0002117899999996689510013676410001279999999999996698899813433204058758999986--78 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS--NG 261 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~--~g 261 (549) -+.+.+.+.+.+++.|+++++++.++.+..+++......+. ++ T Consensus 220 -----------------------------------D~ei~~~l~~~l~~~GV~i~~~~~v~~ie~~~~~~~~~~~~~~~~ 264 (476) T 3lad_A 220 -----------------------------------DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGE 264 (476) T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEE T ss_pred -----------------------------------CHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCC T ss_conf -----------------------------------778899999988744840035635788764178856999976894 Q ss_pred CEEEECEEEEECCC Q ss_conf 48970568993188 Q T0604 262 EEIKSRHVVLAVGH 275 (549) Q Consensus 262 ~~i~ad~VVlAtGh 275 (549) +.+++|.|++|+|. T Consensus 265 ~~~~~D~VlvA~Gr 278 (476) T 3lad_A 265 KSQAFDKLIVAVGR 278 (476) T ss_dssp EEEEESEEEECSCE T ss_pred EEEECCEEEEEECC T ss_conf 22444899997266 No 184 >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=97.73 E-value=3e-05 Score=49.65 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=76.8 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|+.|+..|..|++.|.+|+|+|+++.+..+ | T Consensus 174 ~~~pk~v~VIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------~--------- 216 (470) T 1dxl_A 174 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT----------------------------M--------- 216 (470) T ss_dssp SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------------------------S--------- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC----------------------------C--------- T ss_conf 206984999997899999999999649969999868834320----------------------------1--------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCC-EEEEEEECCC- Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587-5899998678- Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDG-QITGVTLSNG- 261 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g-~v~gV~t~~g- 261 (549) -+.+.+.+.+.+++.|++++++++|+.+...++ ....+...++ T Consensus 217 -----------------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~~~ 261 (470) T 1dxl_A 217 -----------------------------------DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGG 261 (470) T ss_dssp -----------------------------------CHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSC T ss_pred -----------------------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEECCCC T ss_conf -----------------------------------999999999999977979974550799998179826999977998 Q ss_pred --CEEEECEEEEECCC Q ss_conf --48970568993188 Q T0604 262 --EEIKSRHVVLAVGH 275 (549) Q Consensus 262 --~~i~ad~VVlAtGh 275 (549) .++++|.|++|+|. T Consensus 262 ~~~~i~~D~vl~A~Gr 277 (470) T 1dxl_A 262 EQTIIEADVVLVSAGR 277 (470) T ss_dssp CCEEEEESEEECCCCE T ss_pred CEEEECCCEEEECCCC T ss_conf 1346506778884687 No 185 >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str} Probab=97.69 E-value=0.00012 Score=45.89 Aligned_cols=45 Identities=27% Similarity=0.308 Sum_probs=31.7 Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8874302689854201235335789999999999999999999975 Q T0604 500 GKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIVAA 545 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEgaGyagGI~saa~~G~~~a~~i~~~~~~~ 545 (549) |+++++ ++||+|.||+.++...-+..|.-+|..||..|.++|+.. T Consensus 250 d~~~~T-s~p~VyA~GD~~~~~~~~~~A~~~G~~Aa~~i~~~l~~~ 294 (297) T 3fbs_A 250 DPMKQT-TARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFP 294 (297) T ss_dssp CTTCBC-SSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHHCC T ss_pred CCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 989731-899999998578982279999999999999999984370 No 186 >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Probab=97.68 E-value=0.00011 Score=46.23 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=61.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .++++|+|+|+.|+.+|..|++.|.+|.|+++.+.+..+. + T Consensus 146 ~~~v~viGgG~~g~e~A~~l~~~g~~vtv~~~~~~~l~~~---------------------------~------------ 186 (385) T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ---------------------------L------------ 186 (385) T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT---------------------------S------------ T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---------------------------C------------ T ss_conf 9769999786056789999996299279999615311233---------------------------5------------ Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) -+.+...+.+.+++.|++++++++++++ |.++++ T Consensus 187 --------------------------------~~~~~~~~~~~l~~~gv~~~~~~~v~~~--------------g~~i~~ 220 (385) T 3klj_A 187 --------------------------------DRDGGLFLKDKLDRLGIKIYTNSNFEEM--------------GDLIRS 220 (385) T ss_dssp --------------------------------CHHHHHHHHHHHHTTTCEEECSCCGGGC--------------HHHHHH T ss_pred --------------------------------CHHHHHHHHHHHHHCCEEEEECCEEEEC--------------CCEEEE T ss_conf --------------------------------7899999999876277599958799865--------------749950 Q ss_pred CEEEEECCC Q ss_conf 568993188 Q T0604 267 RHVVLAVGH 275 (549) Q Consensus 267 d~VVlAtGh 275 (549) |.||+|+|. T Consensus 221 D~vi~a~G~ 229 (385) T 3klj_A 221 SCVITAVGV 229 (385) T ss_dssp SEEEECCCE T ss_pred CEEEECCCC T ss_conf 689986465 No 187 >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Probab=97.68 E-value=6.2e-05 Score=47.66 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=73.9 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+..+. T Consensus 181 ~~pk~VvVIGgG~ig~E~A~~l~~~G~~Vtli~r~~~~l~~~-------------------------------------- 222 (478) T 1v59_A 181 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM-------------------------------------- 222 (478) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS-------------------------------------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-------------------------------------- T ss_conf 389879999988999999999997598799985023333333-------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECC-CEEEEEEECC--- Q ss_conf 002117899999996689510013676410001279999999999996698899813433204058-7589999867--- Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQITGVTLSN--- 260 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~-g~v~gV~t~~--- 260 (549) .......+.+.+++.++.+++...+..+...+ +.+..+.+.+ T Consensus 223 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 268 (478) T 1v59_A 223 ----------------------------------DGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKT 268 (478) T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTT T ss_pred ----------------------------------CCHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCEEEEEEEECCC T ss_conf ----------------------------------3201478999998510405640024689970688426899763478 Q ss_pred --CCEEEECEEEEECCC Q ss_conf --848970568993188 Q T0604 261 --GEEIKSRHVVLAVGH 275 (549) Q Consensus 261 --g~~i~ad~VVlAtGh 275 (549) ++++++|.|++|+|. T Consensus 269 ~~~~~~~~D~Vl~a~G~ 285 (478) T 1v59_A 269 NKQENLEAEVLLVAVGR 285 (478) T ss_dssp TEEEEEEESEEEECSCE T ss_pred CCEEEEECCEEEECEEE T ss_conf 96389992899987000 No 188 >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Probab=97.67 E-value=0.00031 Score=43.31 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=30.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 76776689879879999999999659908998358 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg 139 (549) ...++|+|||+|+.|+.+|..|++.+.+|.++.+. T Consensus 150 ~~~k~v~VvGgG~~g~e~A~~l~~~~~~v~~~~~~ 184 (325) T 2q7v_A 150 YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRR 184 (325) T ss_dssp GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSS T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 28998999998989999999998446853599823 No 189 >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Probab=97.67 E-value=0.00067 Score=41.20 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 6776689879879999999999659908998358 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg 139 (549) ..++|+|||+|+.|+.+|..|++.|.+|.++++. T Consensus 144 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~~ 177 (320) T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR 177 (320) T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEECCC T ss_conf 5988999998899999999997326743121034 No 190 >2vq7_A Flavin-containing monooxygenase; NADP, drug metabolism NADP, oxidoreductase, drug metabolism; HET: FAD NAP EPE PGE PG4; 2.60A {Methylophaga SP} PDB: 2vqb_A* Probab=97.66 E-value=0.00037 Score=42.82 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=30.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 677668987987999999999965990899835 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlEr 138 (549) ..++|+|||+|.+|+-.|..|++.|.+|+++-| T Consensus 201 ~gk~VlVVG~G~Sa~Dia~~l~~~g~~v~~~~r 233 (461) T 2vq7_A 201 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCY 233 (461) T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTCSEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEE T ss_conf 798699988873099999999974696999997 No 191 >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* Probab=97.63 E-value=8.7e-05 Score=46.76 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=76.4 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|+.|+..|..|++.|.+|+|+|+.+.+..+.. T Consensus 175 ~~~pk~vvIIGgG~iGlE~A~~l~~~G~~Vtlv~~~~~~L~~~~------------------------------------ 218 (474) T 1zmd_A 175 KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGI------------------------------------ 218 (474) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSC------------------------------------ T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCCHHEEEECCHHHCCCC------------------------------------ T ss_conf 01697699999689999999999863531010343321101333------------------------------------ Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEE--EEECCC Q ss_conf 000211789999999668951001367641000127999999999999669889981343320405875899--998678 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITG--VTLSNG 261 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~g--V~t~~g 261 (549) -+.+.+.+.+.+++.|+++++++.|+.+..+++.... +...++ T Consensus 219 -----------------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~v~~~~~ 263 (474) T 1zmd_A 219 -----------------------------------DMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASG 263 (474) T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTS T ss_pred -----------------------------------HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEEEECCC T ss_conf -----------------------------------699999999999975996412300466654033313799998779 Q ss_pred ---CEEEECEEEEECCC Q ss_conf ---48970568993188 Q T0604 262 ---EEIKSRHVVLAVGH 275 (549) Q Consensus 262 ---~~i~ad~VVlAtGh 275 (549) +++++|.|++|+|. T Consensus 264 ~~~~~~~~D~vl~a~G~ 280 (474) T 1zmd_A 264 GKAEVITCDVLLVCIGR 280 (474) T ss_dssp CCCEEEEESEEEECSCE T ss_pred CCEEEEECCEEEEEECC T ss_conf 90489987999990082 No 192 >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Probab=97.54 E-value=0.00012 Score=45.84 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=79.1 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|..|+.+|..|++.|.+|+|+|+++.+..+ + T Consensus 164 ~~pk~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ll~~----------------------------~---------- 205 (463) T 2r9z_A 164 QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ----------------------------F---------- 205 (463) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------------------S---------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCC----------------------------H---------- T ss_conf 27998999998899999999999769999775420344562----------------------------0---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) -..+...+.+.+++.|+++++++++..+..+++....+...+++.+ T Consensus 206 ----------------------------------d~e~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~ 251 (463) T 2r9z_A 206 ----------------------------------DPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLE 251 (463) T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEE T ss_pred ----------------------------------HHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEECCCCEEE T ss_conf ----------------------------------4555555555532154599823289999975986999986897899 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) ++|.||+|+|. T Consensus 252 ~~D~vl~a~G~ 262 (463) T 2r9z_A 252 GFDSVIWAVGR 262 (463) T ss_dssp EESEEEECSCE T ss_pred EECEEEEEEEE T ss_conf 62569999867 No 193 >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavoprotein, FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Probab=97.52 E-value=0.00012 Score=45.91 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=75.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|+.|+..|..|++.|.+|+|+|+.+.+.. T Consensus 183 ~~pk~v~VIGgG~iglE~A~~l~~lG~~Vtli~~~~~ll~---------------------------------------- 222 (482) T 1ojt_A 183 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ---------------------------------------- 222 (482) T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC---------------------------------------- T ss_conf 0599799999789999999999976997899983565576---------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE----CC Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998----67 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL----SN 260 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t----~~ 260 (549) .+ -+.+.+.+.+.++..|+++++++.++.+..+++... +.+ .+ T Consensus 223 --~~------------------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~~~~~~~~~ 269 (482) T 1ojt_A 223 --GA------------------------------DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVY-VTFEGANAP 269 (482) T ss_dssp --TS------------------------------CHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEE-EEEESSSCC T ss_pred --CC------------------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEE-EEEEEECCC T ss_conf --44------------------------------699999988778860735632526899997499189-999750344 Q ss_pred CCEEEECEEEEECCCC Q ss_conf 8489705689931887 Q T0604 261 GEEIKSRHVVLAVGHS 276 (549) Q Consensus 261 g~~i~ad~VVlAtGhs 276 (549) ++++++|.|++|+|.. T Consensus 270 ~~~~~~D~vl~a~G~~ 285 (482) T 1ojt_A 270 KEPQRYDAVLVAAGRA 285 (482) T ss_dssp SSCEEESCEEECCCEE T ss_pred CCCCCCCEEEEECCCC T ss_conf 4001158899941665 No 194 >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=97.40 E-value=0.00022 Score=44.23 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=73.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|..|+..|..|++.|.+|+|+|+.+.+..+ + T Consensus 174 ~~pk~vvIiGgG~iglE~A~~l~~~g~~Vtli~~~~~il~~----------------------------~---------- 215 (500) T 1onf_A 174 KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK----------------------------F---------- 215 (500) T ss_dssp CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT----------------------------S---------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCHHCCC----------------------------C---------- T ss_conf 58987999997689999999988629779999864500102----------------------------2---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCE-EEEEEECCCCE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875-89999867848 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQ-ITGVTLSNGEE 263 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~-v~gV~t~~g~~ 263 (549) ...+.+.+...++..+++++.++.+..+...... .......++.+ T Consensus 216 ----------------------------------~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (500) T 1onf_A 216 ----------------------------------DESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIY 261 (500) T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEE T ss_pred ----------------------------------CHHHHHHHHHHHHHCCEEEEECEEEEEEEEECCCEEEEEECCCCCE T ss_conf ----------------------------------6899999999998658499964179999980696099996079730 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +++|.+++|+|. T Consensus 262 ~~~d~vlva~G~ 273 (500) T 1onf_A 262 EHFDHVIYCVGR 273 (500) T ss_dssp EEESEEEECCCB T ss_pred EEEEEEEEEECC T ss_conf 554578997163 No 195 >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Probab=97.40 E-value=0.00024 Score=44.00 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=34.0 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77677668987987999999999965990899835888 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ..++++|+|||+|+.|+.+|..|++.|.+|+++++.+. T Consensus 169 ~~~pk~vvVIGgG~ig~E~A~~l~~~G~~vt~i~~~~~ 206 (466) T 3l8k_A 169 RKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR 206 (466) T ss_dssp CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS T ss_pred HCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 20798899999889999999998618978998641012 No 196 >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Probab=97.36 E-value=0.00033 Score=43.14 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=75.1 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++++|||+|..|+..|..+++.|.+|+|+||.+.+. .| | T Consensus 182 ~~~Pk~vvVIGgG~iGlE~A~~~~~lG~~Vtvi~r~~~L~-----------------------------~~-D------- 224 (488) T 3dgz_A 182 KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR-----------------------------GF-D------- 224 (488) T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-----------------------------TS-C------- T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC-----------------------------CC-C------- T ss_conf 0079639998686428769999972798489998056565-----------------------------41-8------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC--- Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867--- Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN--- 260 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~--- 260 (549) +++.+.+++.+++.|+++++++.++.+...++....+.+.+ T Consensus 225 ------------------------------------~e~~~~l~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (488) T 3dgz_A 225 ------------------------------------QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHAS 268 (488) T ss_dssp ------------------------------------HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTT T ss_pred ------------------------------------HHHHHHHHHHHHHHHHEEECCCEEEEEEEECCCCEEEEEEECCC T ss_conf ------------------------------------99999999999961020023736568886215640466420246 Q ss_pred --CCEEEECEEEEECCCC Q ss_conf --8489705689931887 Q T0604 261 --GEEIKSRHVVLAVGHS 276 (549) Q Consensus 261 --g~~i~ad~VVlAtGhs 276 (549) .+++++|.|++|+|.. T Consensus 269 ~~~~~i~~D~vl~a~Gr~ 286 (488) T 3dgz_A 269 GKEDTGTFDTVLWAIGRV 286 (488) T ss_dssp TEEEEEEESEEEECSCEE T ss_pred CCCEEEECCEEEEEECCC T ss_conf 763253034599955865 No 197 >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Probab=97.30 E-value=0.0025 Score=37.65 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=38.2 Q ss_pred CCCCCCCCCCCCEEECCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 887430268985420123533578---999999999999999999997521 Q T0604 500 GKDFQSVNLKGFYPAGEGAGYAGG---ILSAGIDGIKVAEAVARDIVAAME 547 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEgaGyagG---I~saa~~G~~~a~~i~~~~~~~~~ 547 (549) |++||+ ++||+|.||+.++|-++ ++.|+-+|..||..|.++|...+. T Consensus 272 d~~~~T-s~~~IyA~GDv~~~~~~~~~~~~A~~~G~~AA~~i~~~l~~~~~ 321 (323) T 3f8d_A 272 DEWMRT-SVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKKG 321 (323) T ss_dssp CTTCBC-SSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred CCCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999651-89999998957489887629999999999999999999744515 No 198 >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Probab=97.27 E-value=0.00041 Score=42.51 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=72.3 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++|+|||+|+.|+.+|..|++.|.+|+++++++.+... + T Consensus 172 ~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------~---------- 213 (468) T 2qae_A 172 RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT----------------------------L---------- 213 (468) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------------------S---------- T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHHHH----------------------------C---------- T ss_conf 15988999999788999999999619869999973064430----------------------------3---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHH-HHHCCCEEEEECCCCCCEECCCEEE-EEEECCCC Q ss_conf 002117899999996689510013676410001279999999999-9966988998134332040587589-99986784 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRAT-IIELGGEIRFSTRVDDLHMEDGQIT-GVTLSNGE 262 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~-l~~~G~~i~~~t~V~~i~~~~g~v~-gV~t~~g~ 262 (549) . ..+.+.+.++ .+..|++++.++++..+...++.+. .+.+.+|+ T Consensus 214 -----~-----------------------------~~~~~~l~~~l~~~~gv~v~~~~~v~~i~~~~~~~~~~v~~~~G~ 259 (468) T 2qae_A 214 -----D-----------------------------EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGK 259 (468) T ss_dssp -----C-----------------------------HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC--- T ss_pred -----C-----------------------------HHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCEEEEEEECCCCC T ss_conf -----7-----------------------------988899999997447679972328999860461689999858995 Q ss_pred --EEEECEEEEECCCC Q ss_conf --89705689931887 Q T0604 263 --EIKSRHVVLAVGHS 276 (549) Q Consensus 263 --~i~ad~VVlAtGhs 276 (549) ++++|.|++|+|.. T Consensus 260 ~~~i~~D~Vi~a~G~~ 275 (468) T 2qae_A 260 RETVTCEALLVSVGRR 275 (468) T ss_dssp EEEEEESEEEECSCEE T ss_pred EEEEECCEEEEEECCC T ss_conf 7887529899946885 No 199 >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=97.27 E-value=0.00045 Score=42.29 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=76.6 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|..|+.+|..|++.|.+|+++++.+.+.. T Consensus 168 ~~~k~vvIvGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------------- 207 (455) T 1ebd_A 168 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS---------------------------------------- 207 (455) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------------------------------- T ss_pred HCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC---------------------------------------- T ss_conf 6699789999971488899999635955500003663344---------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC--C Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678--4 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG--E 262 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g--~ 262 (549) .. -+.+...+.+.+++.|++++++++++.+..+++....+...+| . T Consensus 208 --~~------------------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~g~~~ 255 (455) T 1ebd_A 208 --GF------------------------------EKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETK 255 (455) T ss_dssp --TS------------------------------CHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEE T ss_pred --CC------------------------------CHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCEEEEEEECCCCEE T ss_conf --55------------------------------7899999999986268499947589999952864799995189456 Q ss_pred EEEECEEEEECCC Q ss_conf 8970568993188 Q T0604 263 EIKSRHVVLAVGH 275 (549) Q Consensus 263 ~i~ad~VVlAtGh 275 (549) ++++|.|++|+|. T Consensus 256 ~~~~D~vi~aiG~ 268 (455) T 1ebd_A 256 TIDADYVLVTVGR 268 (455) T ss_dssp EEEESEEEECSCE T ss_pred EEECCCEEEEECC T ss_conf 8841418999764 No 200 >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Probab=97.25 E-value=0.00048 Score=42.12 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=78.0 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++++|||+|..|+..|..|++.|.+|+|+||.+.+... + | T Consensus 179 ~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlie~~~~ll~~----------------------------~-d------- 222 (499) T 1xdi_A 179 DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY----------------------------E-D------- 222 (499) T ss_dssp SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC----------------------------S-S------- T ss_pred CCCCCHHEEECCCHHHHHHHEEECCCCCEEEEEECCCCCCHH----------------------------H-H------- T ss_conf 468624200012100121110202469779887427630110----------------------------3-4------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) ..+...+.+.+...|+.++.++.++.+...++... +.+.++++ T Consensus 223 ------------------------------------~e~~~~~~~~l~~~gv~i~~~~~~~~~~~~~~~~~-~~~~~~~~ 265 (499) T 1xdi_A 223 ------------------------------------ADAALVLEESFAERGVRLFKNARAASVTRTGAGVL-VTMTDGRT 265 (499) T ss_dssp ------------------------------------HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEE-EEETTSCE T ss_pred ------------------------------------HHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCE-ECCCCCCE T ss_conf ------------------------------------56777655454216750343223588864178640-01467730 Q ss_pred EEECEEEEECCC Q ss_conf 970568993188 Q T0604 264 IKSRHVVLAVGH 275 (549) Q Consensus 264 i~ad~VVlAtGh 275 (549) +++|.|++|+|. T Consensus 266 ~~~D~vl~a~Gr 277 (499) T 1xdi_A 266 VEGSHALMTIGS 277 (499) T ss_dssp EEESEEEECCCE T ss_pred ECCCCEEEEECC T ss_conf 013407886064 No 201 >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Probab=97.18 E-value=0.0018 Score=38.52 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=28.8 Q ss_pred CCCCCCCCCCCCEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88743026898542012353357-899999999999999999999752 Q T0604 500 GKDFQSVNLKGFYPAGEGAGYAG-GILSAGIDGIKVAEAVARDIVAAM 546 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEgaGyag-GI~saa~~G~~~a~~i~~~~~~~~ 546 (549) |++||+ ++||+|.||+.+++.. =...|+-+|..||..+.+++...| T Consensus 262 d~~~~T-s~pgIfAaGDv~~~~~~~~~~A~~~G~~Aa~~a~~~l~~~k 308 (310) T 1fl2_A 262 DAKCET-NVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK 308 (310) T ss_dssp CTTCBC-SSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHSC T ss_pred CCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 929744-89999999978778744999999999999999999862247 No 202 >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... Probab=97.18 E-value=0.00062 Score=41.39 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=72.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|..|+.+|..|++.|.+|+++++.+....+ T Consensus 185 ~~pk~vvVIGgG~ig~E~A~~l~~lg~~vt~v~~~~~~l~~--------------------------------------- 225 (478) T 3dk9_A 185 ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS--------------------------------------- 225 (478) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--------------------------------------- T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--------------------------------------- T ss_conf 25986999997899999999999728721135420135664--------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEE--ECCC- Q ss_conf 0021178999999966895100136764100012799999999999966988998134332040587589999--8678- Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVT--LSNG- 261 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~--t~~g- 261 (549) . .......+.+.+...++.+++++.++.+...++.+.... ..++ T Consensus 226 ---~------------------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~~~~~~~~~~~ 272 (478) T 3dk9_A 226 ---F------------------------------DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR 272 (478) T ss_dssp ---S------------------------------CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTS T ss_pred ---C------------------------------CCHHHHHHHHHHHHCCCCEECCCEEEEEEECCCCEEEEEEECCCCC T ss_conf ---3------------------------------2024567899986424402226234789980794599999888881 Q ss_pred -----CEEEECEEEEECCC Q ss_conf -----48970568993188 Q T0604 262 -----EEIKSRHVVLAVGH 275 (549) Q Consensus 262 -----~~i~ad~VVlAtGh 275 (549) .++++|.||+|+|. T Consensus 273 ~~~~~~~~~~D~vi~a~G~ 291 (478) T 3dk9_A 273 LPVMTMIPDVDCLLWAIGR 291 (478) T ss_dssp CCEEEEEEEESEEEECSCE T ss_pred CCCCEEEEECCEEEECCCE T ss_conf 3130246652889978341 No 203 >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Probab=97.17 E-value=0.00059 Score=41.54 Aligned_cols=99 Identities=22% Similarity=0.322 Sum_probs=75.4 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 77677668987987999999999965990899835888321101000124354236023455413556521240455322 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...+++|+|||+|..|+.+|..|++.|.+|+|++|++.+.. + T Consensus 173 ~~~pk~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~r~~~ll~-----------------------------~--------- 214 (467) T 1zk7_A 173 DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-----------------------------E--------- 214 (467) T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-----------------------------S--------- T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCC-----------------------------C--------- T ss_conf 33886499966765303445566404544289963035665-----------------------------4--------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCE Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867848 Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~ 263 (549) + +.+...+.+.+++.|+.++++++|+.+..+++.+. +.+.++ + T Consensus 215 -D----------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~-~~~~~~-~ 257 (467) T 1zk7_A 215 -D----------------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFV-LTTTHG-E 257 (467) T ss_dssp -C----------------------------------HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEE-EEETTE-E T ss_pred -H----------------------------------HHHHHHHHHHHHCCEEEEECCCEEEEEEEECCEEE-EEECCC-C T ss_conf -5----------------------------------99999997521002034305726899974056399-983078-2 Q ss_pred EEECEEEEECCCCH Q ss_conf 97056899318876 Q T0604 264 IKSRHVVLAVGHSA 277 (549) Q Consensus 264 i~ad~VVlAtGhsa 277 (549) +.+|.|++|+|... T Consensus 258 ~~~D~vl~AiG~~P 271 (467) T 1zk7_A 258 LRADKLLVATGRTP 271 (467) T ss_dssp EEESEEEECSCEEE T ss_pred EECCEEEECCCCCC T ss_conf 50277998227577 No 204 >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Probab=97.08 E-value=0.00053 Score=41.86 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ..++|+|||+|..|+.+|..|++.|.+|++++++.. T Consensus 154 ~~k~vvIiG~G~~g~E~A~~l~~~g~~Vtli~~~~~ 189 (335) T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE 189 (335) T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 799899988888999999999965998999981651 No 205 >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Probab=97.02 E-value=0.0011 Score=39.97 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=77.3 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..+++|+|||+|..|+.+|..|++.|.+|+++++.+..... T Consensus 165 ~~pk~vvVIGgG~ig~E~A~~l~~~G~~Vt~v~~~~~~~~~--------------------------------------- 205 (450) T 1ges_A 165 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS--------------------------------------- 205 (450) T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT--------------------------------------- T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC--------------------------------------- T ss_conf 28961999888416999999999759879985201356777--------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) . ...+...+.+.++..++.+++++.++.+...++....+.+.+|+++ T Consensus 206 ---~------------------------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~~~~~g~~~ 252 (450) T 1ges_A 206 ---F------------------------------DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSE 252 (450) T ss_dssp ---S------------------------------CHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEE T ss_pred ---C------------------------------CHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCCEEEEEECCCCEE T ss_conf ---6------------------------------5666567776654325342015058999975894377770799657 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) .+|.|++|+|. T Consensus 253 ~~d~vl~a~G~ 263 (450) T 1ges_A 253 TVDCLIWAIGR 263 (450) T ss_dssp EESEEEECSCE T ss_pred EEEEEEEECCC T ss_conf 66799992475 No 206 >3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} Probab=97.01 E-value=0.00092 Score=40.34 Aligned_cols=112 Identities=23% Similarity=0.357 Sum_probs=84.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 67766898798799999999996599089983588832110100012435423602345541355652124045532200 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~ 185 (549) ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+. + T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------------------~------------------- 183 (410) T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV-------------------L------------------- 183 (410) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH-------------------H------------------- T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-------------------C------------------- T ss_conf 69889998988889999999986598677763165012455-------------------7------------------- Q ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEE Q ss_conf 02117899999996689510013676410001279999999999996698899813433204058758999986784897 Q T0604 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549) Q Consensus 186 ~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ 265 (549) ...+-+.+.+.+++.|++++++++++++..+ +++..+.+.+|++++ T Consensus 184 ---------------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~~~v~~~~g~~i~ 229 (410) T 3ef6_A 184 ---------------------------------GRRIGAWLRGLLTELGVQVELGTGVVGFSGE-GQLEQVMASDGRSFV 229 (410) T ss_dssp ---------------------------------CHHHHHHHHHHHHHHTCEEECSCCEEEEECS-SSCCEEEETTSCEEE T ss_pred ---------------------------------CHHHHHHHHHHHHHCCEEEEECCEEEEEECC-CCEEEEECCCCCEEE T ss_conf ---------------------------------7778899999886267499957578899258-847999848998898 Q ss_pred ECEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 05689931887679999999669711 Q T0604 266 SRHVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 266 ad~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) ||.||+|+|...... ++...|+.. T Consensus 230 ~D~vv~a~G~~p~~~--~~~~~gl~~ 253 (410) T 3ef6_A 230 ADSALICVGAEPADQ--LARQAGLAC 253 (410) T ss_dssp CSEEEECSCEEECCH--HHHHTTCCB T ss_pred ECEEEEEECCCCCCH--HHHHCCEEC T ss_conf 299999226526854--677467462 No 207 >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ binding, reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori 26695} PDB: 2q0k_A* 3ish_A* Probab=97.00 E-value=0.00089 Score=40.41 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=35.6 Q ss_pred CCCCCCCCCCCCEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88743026898542012353357-8999999999999999999997 Q T0604 500 GKDFQSVNLKGFYPAGEGAGYAG-GILSAGIDGIKVAEAVARDIVA 544 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEgaGyag-GI~saa~~G~~~a~~i~~~~~~ 544 (549) |++||+ +++|+|.||+.+-+.. =+++|+-+|-.||..|.++++. T Consensus 266 d~~~~T-S~~gVfA~GDv~~~~~~~~~~A~~~G~~AA~~i~~yl~~ 310 (311) T 2q0l_A 266 DFSMKT-NVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH 310 (311) T ss_dssp CTTCBC-SSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999703-899999999797687629999999999999999999861 No 208 >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Probab=96.96 E-value=0.0077 Score=34.54 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=91.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCC--CCCCCCCCCCH----H-------HHHHHHCCC Q ss_conf 677668987987999999999965--99089983588832110100--01243542360----2-------345541355 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERTKDT--FGFWRKRTLNP----E-------SNVQFGEGG 170 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~--G~~V~VlErg~~vg~r~~~~--~~~~~~~~~~~----~-------~n~~~g~gg 170 (549) ..-.|||||+|--|-.||++|.+. +.+.+++|+|.-+.+....+ .+.|..-.+-. + ..-.||.++ T Consensus 35 ~aydvvv~gagrmgaacalylrqlap~~rlllveegglpneegatilapgvwta~d~pag~eaea~wvr~ql~~~fg~~~ 114 (405) T 3c4n_A 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGK 114 (405) T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSC T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 66647997777521579999997688754898614898875785565464031354751467788999999988636776 Q ss_pred CCCCCCHHHHH----HHHHHCCCHHHHHHHHHHCCC--CCCCCCCCC--CCEECCHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 65212404553----220002117899999996689--510013676--4100012799999999999966988998134 Q T0604 171 AGTFSDGKLYS----QVKDPNFYGRKVITEFVEAGA--PEEILYVSK--PHIGTFKLVTMIEKMRATIIELGGEIRFSTR 242 (549) Q Consensus 171 ag~fsdgkl~t----~~~~~~~~~~~vl~~~~~~Ga--~~~i~~~~k--ph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~ 242 (549) .-+|.+-.|.. .-.+......+.+..|-+.-. ....+-..+ |...|-+...+.-...+++...|.....+++ T Consensus 115 t~~~~~rpll~ll~a~e~~g~~~t~d~la~fpea~~l~d~a~lp~arvdp~a~tyrpgaval~~aqqai~qga~lllntr 194 (405) T 3c4n_A 115 TLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTR 194 (405) T ss_dssp CCCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCE T ss_pred CCEECCCHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHCCCCCCCCEECCHHHHCCCCCHHHHHHHHHHHHHCCCCEECCC T ss_conf 20167612654314323688574376665363555432703496112284663368508999988999862632014153 Q ss_pred CCCC---------EECCCEEEEEEECCCCEEEECEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 3320---------405875899998678489705689931887679999999669711 Q T0604 243 VDDL---------HMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 243 V~~i---------~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) .+-+ ...|- ..|++....++.+..||+|.|..+. +..-+++|++. T Consensus 195 a~lvpggvrl~rltvtnt--hqivthet~~l~a~~viva~ga~gp--~~aeh~lglht 248 (405) T 3c4n_A 195 AELVPGGVRLHRLTVTNT--HQIVVHETRQIRAGVIIVAAGAAGP--ALVEQGLGLHT 248 (405) T ss_dssp EEEETTEEEEECBCC---------CBCCEEEEEEEEEECCGGGHH--HHHHHHHCCCC T ss_pred EEECCCCEEEEEEEEECC--EEEEEEEEEEECCCEEEEECCCCCC--HHHHCCCCCCH T ss_conf 055168258889986233--3678521006505459998168983--55431346310 No 209 >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate biosynthesis, PSI-2; 1.90A {Methylococcus capsulatus} Probab=96.92 E-value=0.001 Score=40.07 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=31.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 67766898798799999999996599089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) |.-||.|+|+|.-|.+.|..|++.|++|+++.|+. T Consensus 1 m~MkI~I~GaGaiG~~~a~~L~~aG~~Vtli~R~~ 35 (320) T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320) T ss_dssp --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 99889998979999999999996899089997856 No 210 >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Probab=96.86 E-value=0.00099 Score=40.12 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=32.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +++|.|||+|.-|+..|..|+++|++|++++|.+.. T Consensus 4 ~k~iaViG~G~~G~~~A~~La~~G~~V~~~~r~~~~ 39 (359) T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQR 39 (359) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 998999898989999999999789948999899999 No 211 >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Probab=96.79 E-value=0.0019 Score=38.38 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=70.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 76776689879879999999999659--9089983588832110100012435423602345541355652124045532 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQ 182 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~ 182 (549) ..+||||||||||||+.||..|++.| .+|+|||+++... +..|+. ....++ ... T Consensus 34 ~~sKkVVIIGgG~AGlsaA~~lrr~g~~~~Vtliek~~~~~--------~~~~~l-------p~~i~g--~~~------- 89 (588) T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--------FANCGL-------PYYIGG--VIT------- 89 (588) T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--------BCGGGH-------HHHHTT--SSC------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC--------CCCCHH-------HHHHCC--CCC------- T ss_conf 89985999898899999999998179888289993899777--------887634-------688567--778------- Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC-- Q ss_conf 200021178999999966895100136764100012799999999999966988998134332040587589999867-- Q T0604 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN-- 260 (549) Q Consensus 183 ~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~-- 260 (549) ..+.+.. ........+.+++++.+++|++|..++..|....... T Consensus 90 --------------------~~~~l~~--------------~~~~~~~~~~~i~v~~~~eV~~ID~~~k~V~~~~~~t~~ 135 (588) T 3ics_A 90 --------------------ERQKLLV--------------QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNE 135 (588) T ss_dssp --------------------CGGGGBS--------------SCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCC T ss_pred --------------------CHHHHHH--------------HHHHHHHHHCCCEEEECCEEEEEECCCCEEEEECCCCCC T ss_conf --------------------7798865--------------469999987596899678899998788889993277774 Q ss_pred CCEEEECEEEEECCC Q ss_conf 848970568993188 Q T0604 261 GEEIKSRHVVLAVGH 275 (549) Q Consensus 261 g~~i~ad~VVlAtGh 275 (549) +.++.+|.+|||||. T Consensus 136 ~~~~~YD~LVIATGs 150 (588) T 3ics_A 136 TYNEAYDVLILSPGA 150 (588) T ss_dssp EEEEECSEEEECCCE T ss_pred EEEEECCEEEEECCC T ss_conf 589866899992461 No 212 >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Probab=96.76 E-value=0.0022 Score=38.00 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=45.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 56554226676656677788776776689879879999999999659908998358883 Q T0604 84 NDPHVRQTPDMEYKFVAKAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ++..+....+.-|-.....+.+..+||.|||.|.-|.-.|..|++.|++|.+++|.+.. T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~kkIg~IGlG~MG~~ma~~L~~~G~~v~v~dr~~~k 65 (316) T 2uyy_A 7 HSSGVDLGTENLYFQSMGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK 65 (316) T ss_dssp ------------------CCCCCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGG T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 54556657540010334568999996999801798999999999889979998299999 No 213 >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Probab=96.72 E-value=0.0025 Score=37.62 Aligned_cols=98 Identities=22% Similarity=0.270 Sum_probs=71.4 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++++|||+|+.|+.+|..|.+.|.+|+++|+++.+.... + + T Consensus 143 ~~~~~v~VvGgG~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~---------------------------~-~-------- 186 (408) T 2gqw_A 143 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA---------------------------A-P-------- 186 (408) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT---------------------------S-C-------- T ss_pred CCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHCCC---------------------------C-C-------- T ss_conf 689669998983565344552045683799951444111234---------------------------7-6-------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) ....+.+...+.+.|+++++++.|+.+... .+.+.+|+++ T Consensus 187 -----------------------------------~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~-----~~~~~~g~~i 226 (408) T 2gqw_A 187 -----------------------------------ATLADFVARYHAAQGVDLRFERSVTGSVDG-----VVLLDDGTRI 226 (408) T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCEEEESCCEEEEETT-----EEEETTSCEE T ss_pred -----------------------------------HHHHHHHHHHHHHCCEEEEECCEEEEEEEE-----EEEECCCCEE T ss_conf -----------------------------------888999999888558699951189876410-----5885048561 Q ss_pred EECEEEEECCCCHH Q ss_conf 70568993188767 Q T0604 265 KSRHVVLAVGHSAR 278 (549) Q Consensus 265 ~ad~VVlAtGhsar 278 (549) ++|.||+|+|.... T Consensus 227 ~~D~vi~a~G~~p~ 240 (408) T 2gqw_A 227 AADMVVVGIGVLAN 240 (408) T ss_dssp ECSEEEECSCEEEC T ss_pred CCCEEEEEECCCCC T ss_conf 36889998362578 No 214 >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Probab=96.72 E-value=0.0034 Score=36.80 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=37.5 Q ss_pred ECCC-CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2048-8743026898542012353357899999999999999999999752 Q T0604 497 IKRG-KDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIVAAM 546 (549) Q Consensus 497 i~r~-~tleS~~i~GLY~~GEgaGyagGI~saa~~G~~~a~~i~~~~~~~~ 546 (549) |..| .+|+ ++++|+|.+|+...=+..++.|.-+|-+||+.|-++|+.+. T Consensus 398 i~vd~~~~~-Ts~pgVfA~GD~~~G~~~vv~Ai~~G~~aA~~I~~yL~~~~ 447 (456) T 2vdc_G 398 LLVDHRTKM-TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKA 447 (456) T ss_dssp BCCCTTTCB-CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 875899986-79999999457666855999999999999999999971566 No 215 >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Probab=96.66 E-value=0.0025 Score=37.57 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=69.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 6689879879999999999659--90899835888321101000124354236023455413556521240455322000 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) ||||||||||||.||..|++.| .+|+|+|+++.+. +.+|+. ....++ .+. .. T Consensus 2 KVvIIG~G~AGl~aA~~l~~~~~~~~V~lie~~~~~~--------~~~~~~-------~~~~~~--~~~---------~~ 55 (452) T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS--------FLSCGI-------ALYLGK--EIK---------NN 55 (452) T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC--------BCGGGH-------HHHHTT--CBG---------GG T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCCCCH-------HHHHCC--CCC---------CC T ss_conf 6999997899999999998349698389990899767--------777611-------366547--756---------54 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEE--ECCCCEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999--8678489 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVT--LSNGEEI 264 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~--t~~g~~i 264 (549) . +....+ . ..+.+.+.+++++.+++|+.|..++..+..-. +.++.++ T Consensus 56 ~---------------~~~~~~------~----------~~~~~~~~~i~v~~~~~V~~Id~~~k~V~~~~~~~~~~~~i 104 (452) T 2cdu_A 56 D---------------PRGLFY------S----------SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTE 104 (452) T ss_dssp C---------------GGGGBS------C----------CHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEE T ss_pred C---------------HHHHHH------H----------CHHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCCEEE T ss_conf 8---------------788865------5----------79999977989995887999987887899942355542048 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) .+|.+|+|||. T Consensus 105 ~yd~lViAtG~ 115 (452) T 2cdu_A 105 AYDKLIMTTGS 115 (452) T ss_dssp ECSEEEECCCE T ss_pred EEEEEEECCCC T ss_conf 84156532566 No 216 >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} Probab=96.65 E-value=0.0015 Score=38.92 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 67766898798799999999996599089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) |+-||.|+|+|.-|.+.|..|++.|++|+++-|+. T Consensus 1 m~MkI~IiGaGaiG~~~a~~L~~aG~~Vtlv~R~~ 35 (312) T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312) T ss_dssp ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 99889998959999999999984699459996876 No 217 >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Probab=96.63 E-value=0.00088 Score=40.44 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 766898798799999999996599089983588 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) +||.|||+|.-|+..|..|++.|++|+++++.. T Consensus 16 ~KI~ViGaG~~G~~~a~~La~~G~~V~~~d~~~ 48 (366) T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366) T ss_dssp EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 779998888999999999997899699998999 No 218 >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia solanacearum MOLK2} Probab=96.63 E-value=0.0022 Score=38.02 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=29.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 766898798799999999996599089983588 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .||+|||+|.-|.+.|..|++.|.+|+++-|++ T Consensus 4 ~KI~IiGaGaiG~~~a~~L~~~G~~Vtlv~r~~ 36 (335) T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA 36 (335) T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEHH T ss_conf 889998876999999999996899089997489 No 219 >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, PSI; HET: MSE; 2.00A {Enterococcus faecalis V583} Probab=96.63 E-value=0.0021 Score=38.13 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7766898798799999999996599089983588 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) +-||+|+|+|.-|.+.|..|++.|++|+++.|++ T Consensus 3 ~MkI~IiGaGaiG~~~a~~La~~G~~Vtlv~r~~ 36 (316) T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 8899998928999999999996899789997888 No 220 >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Probab=96.62 E-value=0.0014 Score=39.25 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=32.5 Q ss_pred CCCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 268985420123-5335789999999999999999999975 Q T0604 506 VNLKGFYPAGEG-AGYAGGILSAGIDGIKVAEAVARDIVAA 545 (549) Q Consensus 506 ~~i~GLY~~GEg-aGyagGI~saa~~G~~~a~~i~~~~~~~ 545 (549) +.++|||+|||. +.+-|+|-.|...|++||+.|.+++..+ T Consensus 448 ~p~~~l~~aG~~~s~~~g~~~gA~~SG~~aA~~I~~r~~~~ 488 (489) T 2jae_A 448 EPVDKIYFAGDHLSNAIAWQHGALTSARDVVTHIHERVAQE 488 (489) T ss_dssp SCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHHC- T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99898999978715899828999999999999999877540 No 221 >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* Probab=96.57 E-value=0.0037 Score=36.52 Aligned_cols=36 Identities=36% Similarity=0.548 Sum_probs=34.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 668987987999999999965990899835888321 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .|||||||||||.||+.|++.|++|+|+|+.+.+|+ T Consensus 3 DVvIIG~G~AGl~aA~~l~~~G~~V~viE~~~~lGG 38 (455) T 2yqu_A 3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG 38 (455) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 599999888999999999968897999965899785 No 222 >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Probab=96.55 E-value=0.003 Score=37.07 Aligned_cols=93 Identities=15% Similarity=0.282 Sum_probs=71.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .++|+|||+|+.|+.+|..|++.|.+|+++++++..... +. . T Consensus 148 ~~~vviiGgG~~g~e~A~~l~~~~~~V~l~~~~~~~~~~----------------------------~~----------~ 189 (438) T 1yqz_A 148 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL----------------------------MD----------A 189 (438) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT----------------------------SC----------G T ss_pred CCEEEEEEEEEECCCCCCCEECCCCCCCEEECCCCCCCC----------------------------CH----------H T ss_conf 550578631100012221100032321001100022332----------------------------01----------3 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) ...+.+.+.+++.|++++++++|+.+..+ .+.+.+|+++++ T Consensus 190 ----------------------------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-----~v~~~~g~~~~~ 230 (438) T 1yqz_A 190 ----------------------------------DMNQPILDELDKREIPYRLNEEINAINGN-----EITFKSGKVEHY 230 (438) T ss_dssp ----------------------------------GGGHHHHHHHHHTTCCEEESCCEEEEETT-----EEEETTSCEEEC T ss_pred ----------------------------------HHHHHHHHHCCCCEEEEEECCEEEEEEEC-----CCCCCCCCCCCC T ss_conf ----------------------------------45555542112340699857677776402-----332211122223 Q ss_pred CEEEEECCCC Q ss_conf 5689931887 Q T0604 267 RHVVLAVGHS 276 (549) Q Consensus 267 d~VVlAtGhs 276 (549) |.|++|+|.. T Consensus 231 D~vi~a~G~~ 240 (438) T 1yqz_A 231 DMIIEGVGTH 240 (438) T ss_dssp SEEEECCCEE T ss_pred CCCEEECCCE T ss_conf 3422310631 No 223 >2g1u_A Hypothetical protein TM1088A; , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Probab=96.55 E-value=0.0066 Score=34.98 Aligned_cols=42 Identities=12% Similarity=0.281 Sum_probs=35.9 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 877677668987987999999999965990899835888321 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .....++|+|+|+|.-|...|-.|.+.|.+|+++|+.+..-. T Consensus 15 ~~~k~~~IiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~ 56 (155) T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFH 56 (155) T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGG T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH T ss_conf 442598499989999999999999978991999978888833 No 224 >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* Probab=96.54 E-value=0.0017 Score=38.74 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=32.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCCC Q ss_conf 67766898798799999999996-599089983588832 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVR 143 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~-~G~~V~VlErg~~vg 143 (549) |.-||.|+|||..|+..|..|++ .|++|.++.|.+.-- T Consensus 1 m~MkI~VlGaG~~G~~~A~~La~~aG~~V~l~~r~~~~~ 39 (404) T 3c7a_A 1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEA 39 (404) T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHH T ss_conf 987799988398999999999956998589996898999 No 225 >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* Probab=96.48 E-value=0.0046 Score=35.94 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=77.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ...++++|||+|+.|+.+|..|++.|.+|+++|+.+.+..+. + T Consensus 147 ~~~~~vvivGgG~ig~e~A~~l~~~g~~v~~~~~~~~~l~~~---------------------------~---------- 189 (431) T 1q1r_A 147 IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV---------------------------T---------- 189 (431) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT---------------------------S---------- T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC---------------------------C---------- T ss_conf 258636999567002433999985798799953554121001---------------------------6---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECC--CEEEEEEECCCC Q ss_conf 002117899999996689510013676410001279999999999996698899813433204058--758999986784 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGE 262 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~--g~v~gV~t~~g~ 262 (549) ...+...+...+++.|++++++++|+.+..++ .....+.+.+|+ T Consensus 190 ----------------------------------~~~~~~~~~~~~~~~gv~~~~~~~V~~~~~~~~~~~~~~~~~~~g~ 235 (431) T 1q1r_A 190 ----------------------------------APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT 235 (431) T ss_dssp ----------------------------------CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC T ss_pred ----------------------------------CHHHHHHHHHHHHHCCEEEEECCEEEEEEEECCCEEEEEEECCCCC T ss_conf ----------------------------------4567899999998658478825179999831232048999878995 Q ss_pred EEEECEEEEECCCCHH Q ss_conf 8970568993188767 Q T0604 263 EIKSRHVVLAVGHSAR 278 (549) Q Consensus 263 ~i~ad~VVlAtGhsar 278 (549) +++||.||.|+|.... T Consensus 236 ~i~~D~vi~a~G~~Pn 251 (431) T 1q1r_A 236 RLPADLVIAGIGLIPN 251 (431) T ss_dssp EEECSEEEECCCEEEC T ss_pred EEEECEEEECCCCCCC T ss_conf 9982999989874106 No 226 >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Probab=96.43 E-value=0.0043 Score=36.10 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=65.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 7766898798799999999996599--08998358883211010001243542360234554135565212404553220 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) +.+|||||+||||+.||..|++.|. +|+|+|+.+... +.++... ..+.. +.. T Consensus 1 n~~VvIIGgG~AGl~aA~~lr~~~~~~~V~li~~~~~~~--------y~r~~l~-----~~~~~---~~~---------- 54 (404) T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP--------YQRPPLS-----KAYLK---SGG---------- 54 (404) T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS--------BCSGGGG-----TGGGG---SCC---------- T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC--------CCCCCCH-----HHHHC---CCC---------- T ss_conf 999999898699999999997169668299996888765--------5676356-----99864---888---------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) .+..+.+. . .+.+++.|++++. .+|+.+..+... |++.+|+++ T Consensus 55 -----------------~~~~~~~~---------~-------~~~~~~~~i~~~~-~~v~~i~~~~~~---v~~~~g~~~ 97 (404) T 3fg2_P 55 -----------------DPNSLMFR---------P-------EKFFQDQAIELIS-DRMVSIDREGRK---LLLASGTAI 97 (404) T ss_dssp -----------------CTTSSBSS---------C-------HHHHHHTTEEEEC-CCEEEEETTTTE---EEESSSCEE T ss_pred -----------------CHHHHHCC---------H-------HHHHHHCCCEEEE-EEEEEEECCCCE---EEECCCCEE T ss_conf -----------------88996229---------6-------9999868979996-079998479758---998899799 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) .+|++|+|||. T Consensus 98 ~yd~lviAtGs 108 (404) T 3fg2_P 98 EYGHLVLATGA 108 (404) T ss_dssp ECSEEEECCCE T ss_pred EECEEEECCCC T ss_conf 70328984576 No 227 >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Probab=96.31 E-value=0.0042 Score=36.16 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |+.+|.|||.|.-||.+|..+|+.|++|+.+|-++. T Consensus 1 m~mkI~ViGlG~vGl~~a~~~a~~g~~V~g~D~~~~ 36 (450) T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN 36 (450) T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH T ss_conf 997699989877799999999967991899989999 No 228 >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha JMP134} Probab=96.30 E-value=0.0034 Score=36.80 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=31.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77668987987999999999965990899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .-||.|+|+|.-|.+.|..|+++|++|+++-|+.. T Consensus 19 ~MkI~IlGaGaiG~~~A~~L~~aG~~Vtlv~R~~~ 53 (318) T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILIARPQH 53 (318) T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEECCHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECHHH T ss_conf 89899999279999999999956990899970799 No 229 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=96.29 E-value=0.0037 Score=36.51 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=33.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ++++||+|.|..|...|-.|.+.|++|+++|+.+.. T Consensus 6 ~~~~iIiG~G~~G~~la~~L~~~g~~vvviD~d~~~ 41 (144) T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK 41 (144) T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 786999888899999999999889909999687899 No 230 >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* Probab=96.28 E-value=0.0053 Score=35.56 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=32.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 668987987999999999965990899835888321 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) ||+|+|+|.-|.+-|..|++.|++|+++.|++.... T Consensus 2 kI~IiGaGaiG~~~a~~L~~~G~dV~l~~R~~~~~~ 37 (291) T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYC 37 (291) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEE T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHH T ss_conf 899999179999999999978992799972735532 No 231 >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, PSI-2; 2.30A {Staphylococcus aureus subsp} Probab=96.24 E-value=0.0038 Score=36.49 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |+-||.|||+|.-|.+-|..|++.|.+|+++.|... T Consensus 1 m~MkI~IiGaGaiG~~~a~~L~~~g~~Vtl~~r~~~ 36 (294) T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAK 36 (294) T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH T ss_conf 999999999689999999999955992799965999 No 232 >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Probab=96.21 E-value=0.0046 Score=35.92 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=34.3 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7767766898798799999999996599089983588 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) +.|+++|+|.|+|.-|-..+-.|.++|++|+++.|.. T Consensus 2 ~~M~~~vlI~GaGfIGs~Lv~~L~~~G~~V~~l~R~~ 38 (286) T 3ius_A 2 NAMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286) T ss_dssp ---CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 9899848998862999999999997899899994881 No 233 >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genomics, joint center for structural genomics, JCSG; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima MSB8} Probab=96.18 E-value=0.0037 Score=36.53 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=35.1 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 8776776689879879999999999659908998358883 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+.|+.+|.|||||..|...|..|++.|.+|.++.|.+.. T Consensus 10 ~~~m~mKI~ViGaGawGtAlA~~la~ng~~V~l~~r~~~~ 49 (335) T 1z82_A 10 HHHMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEI 49 (335) T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 4645454999994999999999999789958999718999 No 234 >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Probab=96.17 E-value=0.05 Score=29.42 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC Q ss_conf 677668987987999999999965 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM 129 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~ 129 (549) ..++|+|||+|-.+|-+|..|++. T Consensus 146 ~gk~VvVIGgGnvA~D~ar~l~r~ 169 (456) T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTD 169 (456) T ss_dssp CSSEEEEECCSHHHHHHHHHHHSC T ss_pred CCCEEEEECCCCCHHHHHHHHCCC T ss_conf 787589977775002032120034 No 235 >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Probab=96.15 E-value=0.008 Score=34.43 Aligned_cols=40 Identities=15% Similarity=0.418 Sum_probs=35.4 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 8776776689879879999999999659908998358883 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +.++..+|||+|+|.-|...|-.|.+.|.+|+++|+.+.. T Consensus 3 ~vdl~~HiiIiG~g~~g~~v~~~L~~~~~~v~vId~d~~~ 42 (140) T 3fwz_A 3 AVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTR 42 (140) T ss_dssp CCCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHH T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 6267799999896889999999999779988999898899 No 236 >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Probab=96.13 E-value=0.005 Score=35.69 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879879999999999659908998358883 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +-++|.|||+|.-|---|..++.+|++|+++|+.+.. T Consensus 14 ~I~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 50 (302) T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50 (302) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 5328999896989999999999289967999898899 No 237 >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Probab=96.12 E-value=0.0071 Score=34.76 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77668987987999999999965990899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +-||.|||+|.-|...|..|+++|++|+++++.+. T Consensus 19 ~MKI~VIG~G~mG~~lA~~L~~~Gh~V~v~~r~~~ 53 (209) T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 88899989779999999999977996798459989 No 238 >3dtt_A NADP oxidoreductase; YP_830112.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Probab=96.12 E-value=0.006 Score=35.24 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7668987987999999999965990899835888 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .||.|||+|.-|...|..|++.|++|++++|.+. T Consensus 20 MKIaVIGaG~mG~alA~~La~aG~~V~l~~R~~~ 53 (245) T 3dtt_A 20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK 53 (245) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 9899999769999999999987997999839999 No 239 >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Probab=96.11 E-value=0.01 Score=33.70 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=77.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77668987987999999999965990899835888321101000124354236023455413556521240455322000 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~~~ 186 (549) .++++|+|+|+.|+.+|..+++.|.+|+++++.+....+. + + T Consensus 145 ~~~~viiG~g~~~~e~A~~~~~~g~~Vt~i~~~~~~l~~~---------------------------~-~---------- 186 (384) T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL---------------------------L-H---------- 186 (384) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT---------------------------S-C---------- T ss_pred CCEEEEECCCCEEEHHHHHHCCCCCCEEEEEECCCCCCCC---------------------------C-C---------- T ss_conf 9769998465000001232114675037887446334442---------------------------3-2---------- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEE Q ss_conf 21178999999966895100136764100012799999999999966988998134332040587589999867848970 Q T0604 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549) Q Consensus 187 ~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~a 266 (549) +.+...+.+.+++.++++++++.+..+..+++.+ .+++.+|++++| T Consensus 187 ---------------------------------~~~~~~~~~~~~~~gi~~~~~~~v~~~~~~~~~~-~v~~~~g~~i~~ 232 (384) T 2v3a_A 187 ---------------------------------PAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGL-EAHLSDGEVIPC 232 (384) T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEE-EEEETTSCEEEE T ss_pred ---------------------------------CCCCCCCCCHHHCCCEEECCCCEEEEEEECCCEE-EEEECCCCEEEE T ss_conf ---------------------------------2221010001320666751485589999459879-999759959973 Q ss_pred CEEEEECCCCH Q ss_conf 56899318876 Q T0604 267 RHVVLAVGHSA 277 (549) Q Consensus 267 d~VVlAtGhsa 277 (549) |.|++|+|.+. T Consensus 233 D~vi~a~G~~p 243 (384) T 2v3a_A 233 DLVVSAVGLRP 243 (384) T ss_dssp SEEEECSCEEE T ss_pred EEEEEEECCCC T ss_conf 46999656436 No 240 >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* Probab=96.08 E-value=0.0036 Score=36.62 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=31.4 Q ss_pred CCCCCCCEEECCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02689854201235--335789999999999999999999975 Q T0604 505 SVNLKGFYPAGEGA--GYAGGILSAGIDGIKVAEAVARDIVAA 545 (549) Q Consensus 505 S~~i~GLY~~GEga--GyagGI~saa~~G~~~a~~i~~~~~~~ 545 (549) ...++|||||||.+ +|-|-+..|...|++||+.|++++... T Consensus 619 ~t~~~~L~fAGe~t~~~~~~tv~GA~~SG~raA~~I~~~~~g~ 661 (662) T 2z3y_A 619 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGA 661 (662) T ss_dssp --CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHTC- T ss_pred CCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC T ss_conf 6877858998147268997879999999999999999972589 No 241 >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, cytoplasm, oxidoreductase, phospholipid biosynthesis, structural genomics; HET: EPE; 2.10A {Coxiella burnetii rsa 493} Probab=96.01 E-value=0.0072 Score=34.73 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=33.4 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776776689879879999999999659908998358883 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+.+.+|.|+|||.-|...|..|++.|.+|.++.|.+.. T Consensus 26 ~~~k~kI~ViGaGawGtAlA~~La~ng~~V~l~~r~~~~ 64 (356) T 3k96_A 26 EPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDH 64 (356) T ss_dssp -CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHH T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHH T ss_conf 778988999895999999999999789978999828999 No 242 >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Probab=96.00 E-value=0.0066 Score=34.97 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=33.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 77668987987999999999965990899835888321 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .-||+|+|+|.-|...|..|.+.|++|+++|+.+..-. T Consensus 4 ~m~ViI~G~G~~G~~la~~L~~~~~~V~vId~d~~~~~ 41 (140) T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICK 41 (140) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHHH T ss_conf 99999989899999999999977996799850156665 No 243 >3itj_A Thioredoxin reductase 1; cytoplasm, disulfide bond, FAD, flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-active center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae W303} PDB: 3d8x_A* Probab=95.89 E-value=0.0055 Score=35.47 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=35.1 Q ss_pred CCCCCCCCCCCCCEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 488743026898542012353357-8999999999999999999997 Q T0604 499 RGKDFQSVNLKGFYPAGEGAGYAG-GILSAGIDGIKVAEAVARDIVA 544 (549) Q Consensus 499 r~~tleS~~i~GLY~~GEgaGyag-GI~saa~~G~~~a~~i~~~~~~ 544 (549) .|++|++ ++||+|.||+.+++-. -+..|+-+|-.||..|.++|.. T Consensus 291 vd~~~~T-s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~a~~~l~~ 336 (338) T 3itj_A 291 VPGSSLT-SVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTS 336 (338) T ss_dssp CTTSSBC-SSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8998504-999999999873787709999999999999999999984 No 244 >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Probab=95.84 E-value=0.047 Score=29.59 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=30.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 668987987999999999965990899835888 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|||||||||||.||+.|+++|++|+|||+++. T Consensus 18 DVvIIGgG~AGl~aA~~l~~~g~~V~liek~~~ 50 (319) T 3cty_A 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDKAVA 50 (319) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSST T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 799989889999999999978998899956887 No 245 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Probab=95.82 E-value=0.018 Score=32.16 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=35.0 Q ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 788776776689879879999999999659908998358883 Q T0604 101 KAPENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 101 ~~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+...-.+||.|||+|.-|-+.|..+.+.|++|++++.++.. T Consensus 13 ~~~~~~~kkIlIlG~Gqlgr~la~AAk~lG~~viv~d~~~~~ 54 (433) T 2dwc_A 13 TATTDSAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANA 54 (433) T ss_dssp CTTSTTCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTC T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 898999989999997899999999999869989999798998 No 246 >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} Probab=95.71 E-value=0.012 Score=33.30 Aligned_cols=40 Identities=30% Similarity=0.228 Sum_probs=35.0 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 7767766898798799999999996599089983588832 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) +..+.+|+|+|.|.-|-..|-.|.+.|.+|+++|+.+..- T Consensus 3 e~~~~hviI~G~g~~g~~l~~~L~~~g~~vviid~d~~~~ 42 (141) T 3llv_A 3 ENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKI 42 (141) T ss_dssp ---CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHH T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHH T ss_conf 8887969998998899999999998799389974338899 No 247 >2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3f3s_A* Probab=95.68 E-value=0.01 Score=33.84 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ...+|.|||+|.-|---|..++.+|++|+++|+.+. T Consensus 5 ~~~kVaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 40 (319) T 2dpo_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319) T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH T ss_conf 998189988669999999999958991899979889 No 248 >3eyw_A C-terminal domain of glutathione-regulated potassium-efflux system protein KEFC fused...; KTN, RCK, K+ channel, K+ transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia coli K12} Probab=95.58 E-value=0.014 Score=32.97 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=32.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..+|||+|.|.-|-..|-.|...|.+++++|.++.. T Consensus 4 ~mhVII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~ 39 (413) T 3eyw_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDH 39 (413) T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 898999898889999999999689988999899999 No 249 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Probab=95.58 E-value=0.014 Score=32.87 Aligned_cols=99 Identities=19% Similarity=0.130 Sum_probs=67.9 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 767766898798799999999996599-0899835888321101000124354236023455413556521240455322 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~ 183 (549) ...++|+|||+|..|+-+|..+.+.|. +|+|++|.+...- T Consensus 330 ~~gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtlv~rr~~~~m--------------------------------------- 370 (1025) T 1gte_A 330 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNI--------------------------------------- 370 (1025) T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGC--------------------------------------- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHCC--------------------------------------- T ss_conf 47998999898899999999999859988999972772217--------------------------------------- Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC--- Q ss_conf 00021178999999966895100136764100012799999999999966988998134332040587589999867--- Q T0604 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN--- 260 (549) Q Consensus 184 ~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~--- 260 (549) +. . .. ..+.+.+.|+++++.+....+..+++++.++.+.. T Consensus 371 --~a-~------------------------------~~----ev~~a~~eGV~~~~~~~~~~i~~~~gkV~~~~~~~~e~ 413 (1025) T 1gte_A 371 --RA-V------------------------------PE----EVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQ 413 (1025) T ss_dssp --CS-C------------------------------HH----HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEE T ss_pred --CC-C------------------------------HH----HHHHHHHCCCEEEECCCEEEEEECCCEEEEEEEEEEEE T ss_conf --85-9------------------------------99----99999976978994671489990498799999998554 Q ss_pred ------------CCEEEECEEEEECCCCHHH Q ss_conf ------------8489705689931887679 Q T0604 261 ------------GEEIKSRHVVLAVGHSARD 279 (549) Q Consensus 261 ------------g~~i~ad~VVlAtGhsard 279 (549) ..++++|.||+|+|....+ T Consensus 414 d~~Gr~~~~~g~~~~i~aD~VI~AiG~~p~~ 444 (1025) T 1gte_A 414 DETGKWNEDEDQIVHLKADVVISAFGSVLRD 444 (1025) T ss_dssp CTTSCEEEEEEEEEEEECSEEEECSCEECCC T ss_pred CCCCCEEECCCCEEEEECCEEEEEECCCCCC T ss_conf 4666278459967999999999921567699 No 250 >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, MFE-1, fatty acid beta oxidation, oxidoreductase; 1.90A {Rattus norvegicus} Probab=95.56 E-value=0.042 Score=29.93 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=32.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879879999999999659908998358883 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .-++|.|||||.=|---|..++.+|++|+|+|..+.. T Consensus 36 ~i~~VaViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~ 72 (463) T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQ 72 (463) T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 8798989797899999999998289957999699899 No 251 >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Probab=95.56 E-value=0.0068 Score=34.89 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=30.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2689854201235335789999999999999999999975 Q T0604 506 VNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIVAA 545 (549) Q Consensus 506 ~~i~GLY~~GEgaGyagGI~saa~~G~~~a~~i~~~~~~~ 545 (549) +.++|||+||+... -+||-.|...|++||+.|+..|.+. T Consensus 458 ~~~~~l~~aG~~~~-g~gi~ga~~sG~~aA~~il~~L~~~ 496 (504) T 1sez_A 458 KNLPGLFYAGNHRG-GLSVGKALSSGCNAADLVISYLESV 496 (504) T ss_dssp HHSTTEEECCSSSS-CSSHHHHHHHHHHHHHHHHHHHSSC T ss_pred CCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88999999848999-9888999999999999999997353 No 252 >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Probab=95.52 E-value=0.01 Score=33.78 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=39.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC Q ss_conf 7766898798799999999996599089983588832110100 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDT 149 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~ 149 (549) ...|||||||+|||+||+.|+++|++|+|||+.+.+|+|.... T Consensus 39 ~yDV~IIGaG~aGL~aA~~L~~~G~~V~VlEa~~~vGGr~~t~ 81 (495) T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSS 81 (495) T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEE T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE T ss_conf 5748998958999999999986899889992599871776787 No 253 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} Probab=95.51 E-value=0.019 Score=32.12 Aligned_cols=31 Identities=19% Similarity=-0.013 Sum_probs=28.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 7766898798799999999996599089983 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlE 137 (549) ..+|+|||++++++.+|-.|++.|++|.+.. T Consensus 7 GmkIaViGgd~r~~~~a~~L~~~G~~V~i~g 37 (300) T 2rir_A 7 GLKIAVIGGDARQLEIIRKLTEQQADIYLVG 37 (300) T ss_dssp SCEEEEESBCHHHHHHHHHHHHTTCEEEEES T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 9989998788889999999997899599996 No 254 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=95.49 E-value=0.015 Score=32.74 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=33.7 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCC Q ss_conf 776776689879879999999999659-90899835888 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMG-FNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G-~~V~VlErg~~ 141 (549) ..|..+|+|+|+|--|-..|..|++.| ++|++++|... T Consensus 2 ~~m~~kI~ViGaG~vG~~ia~~L~~~~~~~v~~~dr~~~ 40 (118) T 3ic5_A 2 NAMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA 40 (118) T ss_dssp CTTCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHH T ss_conf 976549899866999999999998589987787506688 No 255 >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Probab=95.49 E-value=0.02 Score=31.94 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=30.1 Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88743026898542012353357899999999999999999 Q T0604 500 GKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVAR 540 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEgaGyagGI~saa~~G~~~a~~i~~ 540 (549) +++++ .+++|+|.+|+..+ .+-|+.|--+|-++|+.|-+ T Consensus 659 ~~~~~-Ts~p~VyaiGDa~~-p~~i~~Ai~~G~~aA~~I~~ 697 (729) T 1o94_A 659 SEWAE-NDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEE 697 (729) T ss_dssp GGTGG-GTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTS T ss_pred CCCCC-CCCCCEEEEECCCC-CCHHHHHHHHHHHHHHHHCC T ss_conf 11135-78999899818162-10799999999999998570 No 256 >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} Probab=95.44 E-value=0.024 Score=31.48 Aligned_cols=113 Identities=19% Similarity=0.358 Sum_probs=82.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 6776689879879999999999-659908998358883211010001243542360234554135565212404553220 Q T0604 106 LTERPIVIGFGPCGLFAGLVLA-QMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La-~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) ..++++|||+|+.|+..|..|+ ..|.+|+++++++.+..+ +.+ T Consensus 158 ~~~~vvViGgG~~g~e~A~~l~~~~~~~Vtl~~~~~~~l~~----------------------------~~~-------- 201 (472) T 3iwa_A 158 EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG----------------------------FTS-------- 201 (472) T ss_dssp SCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT----------------------------TSC-------- T ss_pred CCCEEEEECCCHHHCEEEEECCCCCCCEEEEEECCCCCCCC----------------------------CCC-------- T ss_conf 79879999567110312100123466079862011100554----------------------------442-------- Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEE Q ss_conf 00211789999999668951001367641000127999999999999669889981343320405875899998678489 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i 264 (549) ..+...+.+.+++.|+++++++++..+..+++... +++.+++++ T Consensus 202 -----------------------------------~~~~~~~~~~l~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~~~~i 245 (472) T 3iwa_A 202 -----------------------------------KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA-RVITDKRTL 245 (472) T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEE-EEEESSCEE T ss_pred -----------------------------------HHHHHHHHCCCCCEEEEEEECCEEEEEEECCCEEE-EEECCCCEE T ss_conf -----------------------------------55655431122111599992645899980498069-997467357 Q ss_pred EECEEEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 7056899318876799999996697111 Q T0604 265 KSRHVVLAVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 265 ~ad~VVlAtGhsard~~~~l~~~Gi~~~ 292 (549) ++|.|++|+|..... ++|.+.|+.+. T Consensus 246 ~~D~vl~a~G~~pn~--~~l~~~gi~~~ 271 (472) T 3iwa_A 246 DADLVILAAGVSPNT--QLARDAGLELD 271 (472) T ss_dssp ECSEEEECSCEEECC--HHHHHHTCCBC T ss_pred ECCEEEEEECCCCCC--HHHHHCCCCCC T ss_conf 079899975755585--67986695198 No 257 >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Probab=95.44 E-value=0.0098 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 668987987999999999965990899835888 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +|.|||.|.-||..|..||..|++|+.+|.++. T Consensus 2 kI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~~ 34 (436) T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST 34 (436) T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH T ss_conf 799989677899999999948998899989999 No 258 >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Probab=95.41 E-value=0.031 Score=30.77 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=33.1 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 76776689879879999999999659908998358883 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..-++|.|||||.-|---|..++.+|++|+++|..+.. T Consensus 310 ~~i~kv~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~ 347 (725) T 2wtb_A 310 RKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKF 347 (725) T ss_dssp CCCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHH T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCHHH T ss_conf 45657999886756899999998669984685534588 No 259 >1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} Probab=95.40 E-value=0.0076 Score=34.57 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=35.4 Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88743026898542012353357899999999999999999999752 Q T0604 500 GKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIVAAM 546 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEgaGyagGI~saa~~G~~~a~~i~~~~~~~~ 546 (549) ++.+.+ ..+++|+||+.++ -+||.+|..+|+++|++|++.|.++. T Consensus 287 ~~~~~~-~~~~v~l~GDa~~-g~gi~~A~~sg~~aA~~i~~~L~~e~ 331 (336) T 1yvv_A 287 WGALSD-ADLGIYVCGDWCL-SGRVEGAWLSGQEAARRLLEHLQLEH 331 (336) T ss_dssp CSCEEE-TTTTEEECCGGGT-TSSHHHHHHHHHHHHHHHHHHTTC-- T ss_pred CCCEEE-CCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 542265-7899999821246-86899999999999999999815867 No 260 >2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Probab=95.36 E-value=0.023 Score=31.58 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .++|.|||.|-+|+.+|-.|.+.|++|.+.|..... T Consensus 6 gk~i~iiGiG~sG~s~a~~l~~~G~~v~~~D~~~~~ 41 (445) T 2jfg_A 6 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP 41 (445) T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 998999998899999999999787949999798992 No 261 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} Probab=95.29 E-value=0.024 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=28.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 7766898798799999999996599089983 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlE 137 (549) .++|+|||+++.++.+|-.|++.|++|.+.. T Consensus 5 G~~iaViggd~r~~~~a~~L~~~G~~V~v~~ 35 (293) T 3d4o_A 5 GKHVVIIGGDARQLEIIRKLSTFDAKISLVG 35 (293) T ss_dssp TCEEEEECBCHHHHHHHHHHHHTTCEEEEES T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 7489997986639999999997899899996 No 262 >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, disulfide oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Probab=95.26 E-value=0.018 Score=32.27 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=30.5 Q ss_pred CCCCCCCCCCCEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 874302689854201235335-7899999999999999999999 Q T0604 501 KDFQSVNLKGFYPAGEGAGYA-GGILSAGIDGIKVAEAVARDIV 543 (549) Q Consensus 501 ~tleS~~i~GLY~~GEgaGya-gGI~saa~~G~~~a~~i~~~~~ 543 (549) .+||+ ++||+|.||+.++.. .=+..|+-+|..||..+.++|. T Consensus 281 ~~~~T-sv~~VyA~GDv~~~~~~~~~~A~~~G~~Aa~~~~~~l~ 323 (333) T 1vdc_A 281 GTTQT-SVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQ 323 (333) T ss_dssp TSCBC-SSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 98423-99999999975278741999999999999999999999 No 263 >1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase; HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A* 2wba_A* Probab=95.15 E-value=0.034 Score=30.53 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=30.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCC Q ss_conf 7766898798799999999996599-08998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~v 142 (549) .-.|||||+||||+.||+.|++.|. +|+|+|+.... T Consensus 3 ~yDvvIIG~G~aG~~aA~~a~~~g~k~V~vie~~~~~ 39 (485) T 1aog_A 3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH 39 (485) T ss_dssp SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCC T ss_conf 5268998988899999999997599869999861356 No 264 >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Probab=95.13 E-value=0.025 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=28.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCE-EEEEEC Q ss_conf 677668987987999999999965990-899835 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFN-PIIVER 138 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~-V~VlEr 138 (549) ...||+|||+|.-|..+|..|++.|+. .+|++. T Consensus 117 ~~~~VliiG~GglGs~va~~La~~Gvg~i~liD~ 150 (353) T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDN 150 (353) T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEEC T ss_pred HCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 5598999887889999999999808986999959 No 265 >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Probab=95.11 E-value=0.018 Score=32.17 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=31.9 Q ss_pred CCCCCCEEECCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 268985420123--53357899999999999999999999752 Q T0604 506 VNLKGFYPAGEG--AGYAGGILSAGIDGIKVAEAVARDIVAAM 546 (549) Q Consensus 506 ~~i~GLY~~GEg--aGyagGI~saa~~G~~~a~~i~~~~~~~~ 546 (549) ..+++||||||. ..|.|-|-.|...|++||+.|+++++... T Consensus 791 ~~~g~LfFAGE~Ts~~~pgtveGA~~SG~RAA~~Il~~~~G~~ 833 (852) T 2xag_A 791 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAM 833 (852) T ss_dssp CCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCCG T ss_pred CCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 8888199987346799989389999999999999999852898 No 266 >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Probab=95.10 E-value=0.023 Score=31.53 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=31.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ..++|+|+|.|-+|+.+|-.|++.|..|...+.... T Consensus 8 ~~k~i~iiG~G~sG~s~a~~l~~~G~~v~~~D~~~~ 43 (451) T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF 43 (451) T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 899899998899999999999978997999979878 No 267 >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Probab=95.08 E-value=0.036 Score=30.36 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=32.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987987999999999965990899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+.+|||+|.|.-|...|-.|.+.|.+++++|..+. T Consensus 2 ~k~hviI~G~g~~g~~la~~L~~~g~~vvvid~d~~ 37 (153) T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPE 37 (153) T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 988799989998999999999976998799988837 No 268 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Probab=95.08 E-value=0.056 Score=29.13 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=41.9 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 767766898798799999999996599089983588832110100012435423602345541 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFG 167 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g 167 (549) ...+||-|+|+|=-|.+.+..+.+.|++|++++..+.+..+......+......|.+....+. T Consensus 22 ~~~krigIlG~GQLgrml~~aA~~LGi~v~vld~~~~pa~~v~~~d~~i~~~~~D~~al~~~a 84 (403) T 3k5i_A 22 WNSRKVGVLGGGQLGRMLVESANRLNIQVNVLDADNSPAKQISAHDGHVTGSFKEREAVRQLA 84 (403) T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESTTCTTGGGCCSSCCEESCTTCHHHHHHHH T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCEEEECCCCCHHHHHHHH T ss_conf 789889998798999999999997899899994899986660006448976889999999998 No 269 >2x58_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, lyase, isomerase, peroxisome; HET: ADP COA; 2.80A {Rattus norvegicus} Probab=95.06 E-value=0.038 Score=30.22 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=33.4 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 76776689879879999999999659908998358883 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..-++|.|||+|.=|---|+.++.+|++|+++|..+.. T Consensus 299 ~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~ 336 (727) T 2x58_A 299 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQ 336 (727) T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHH T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCEECHHHHHH T ss_conf 55457999941788999999997559962223246888 No 270 >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens AM1} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Probab=94.97 E-value=0.034 Score=30.50 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.4 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 6776689879-879999999999659908998358 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg 139 (549) ..++|+|.|| |+.|..+|..|++.|.+|+++.|. T Consensus 118 ~gK~vlVtGatggiG~a~A~~la~~Ga~V~l~~R~ 152 (287) T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK 152 (287) T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99989999488899999999999779989998388 No 271 >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Probab=94.87 E-value=0.0085 Score=34.27 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECC--CCEEEECEEEEECC Q ss_conf 99999999999966988998134332040587589999867--84897056899318 Q T0604 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN--GEEIKSRHVVLAVG 274 (549) Q Consensus 220 ~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~--g~~i~ad~VVlAtG 274 (549) ..+++.|. +..+++++.++.|+.|..+++.+..+.+.+ ++.+.+|.||+|+. T Consensus 238 ~~~~~~l~---~~~~~~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~vv~a~p 291 (478) T 2ivd_A 238 QVLIDALA---ASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAP 291 (478) T ss_dssp HHHHHHHH---HHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSC T ss_pred HHHHHHHH---HHHCCEEEECCEEEEEEEECCCCEEEEECCCCCEEEECCCEEECCC T ss_conf 77799998---6403268705258999995894169995355420121242154488 No 272 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Probab=94.82 E-value=0.077 Score=28.27 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..||.|||+|.-|.+.|..+.+.|++|++++.++.. T Consensus 11 ~~kvlIiG~Gql~r~~a~Aa~~lG~~v~~v~~~~~~ 46 (391) T 1kjq_A 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (391) T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 989999897899999999999879989999799998 No 273 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=94.76 E-value=0.037 Score=30.26 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=35.1 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 8776776689879879999999999659908998358883 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+.+.++|.|||.|.-|-.-|+.|.+.|++|.++++.+.. T Consensus 4 ~~~~~r~V~IIGlGliG~SlA~aL~~~g~~V~g~D~~~~~ 43 (341) T 3ktd_A 4 TKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSG 43 (341) T ss_dssp --CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 7889980899975989999999998787989999899999 No 274 >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Probab=94.70 E-value=0.026 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=31.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6689879879999999999659908998358883 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ||+|+|+|--|...|-.|.+.|++|+++|+.+.. T Consensus 2 ~viI~G~g~~G~~la~~L~~~~~~vvvId~d~~~ 35 (218) T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDREL 35 (218) T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 8999998899999999999689979999899999 No 275 >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Probab=94.67 E-value=0.037 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCC Q ss_conf 776689879879999999999659--908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~v 142 (549) .+||.|||.|--||..|..||+.| ++|+.++...+. T Consensus 18 ~~kI~ViGlGyVGl~~A~~lA~~g~~~~V~g~Did~~~ 55 (478) T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKS 55 (478) T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTT T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 77699987777789999999838999859999889743 No 276 >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Probab=94.65 E-value=0.033 Score=30.61 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .++|+|+|+|..|-.+|..|++.|++|+|..|...- T Consensus 3 ~k~V~viGaG~~G~~~a~~L~~~g~~v~va~r~~~~ 38 (450) T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLES 38 (450) T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 877999888899999999998294979999798999 No 277 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=94.60 E-value=0.061 Score=28.89 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=32.8 Q ss_pred CCCCCCEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77677668987-987999999999965990899835888 Q T0604 104 ENLTERPIVIG-FGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVVG-aGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+.-++|+||| .|-=|-+.|..|.+.|+.|.+++|.+. T Consensus 18 ~~~~~kI~IIGG~G~mG~sla~~l~~~G~~V~~~d~~~~ 56 (298) T 2pv7_A 18 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 56 (298) T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCH T ss_conf 888882899938885689999999968994899738813 No 278 >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Probab=94.59 E-value=0.051 Score=29.37 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=31.4 Q ss_pred CCCCC-CCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf 87767-766898798799999999996599-0899835888 Q T0604 103 PENLT-ERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKE 141 (549) Q Consensus 103 ~~~~~-~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~ 141 (549) |.+|. +||.|||+|--|-.+|+.|+..++ +..|++..+. T Consensus 2 ~~~m~~~KV~IiGaG~VG~~~a~~l~~~~l~el~L~Di~~~ 42 (324) T 3gvi_A 2 PGSMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG 42 (324) T ss_dssp ----CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 98788986999898989999999996399988999858998 No 279 >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Probab=94.53 E-value=0.041 Score=30.02 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=32.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 767766898798799999999996599089983588832 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) ..-+||.|||||.-|---|..++.+|++|+++|..+... T Consensus 312 ~~i~kv~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~l 350 (715) T 1wdk_A 312 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI 350 (715) T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH T ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCCEEEECCHHHH T ss_conf 544234431477545530256640586203651588875 No 280 >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Probab=94.52 E-value=0.024 Score=31.40 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=29.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 67766898798799999999996599089983 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlE 137 (549) ..++|+|||+|..+..=+..|.+.|.+|+|+- T Consensus 12 ~~k~vLVVGgG~VA~rr~~~LL~agA~VtVVs 43 (274) T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS 43 (274) T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 89869998998999999999997899699990 No 281 >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transferase, structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Probab=94.49 E-value=0.04 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECC Q ss_conf 7766898798799999999996599-08998358 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERG 139 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg 139 (549) ..+|+|||+|--|..+|..|++.|+ +.+|++.+ T Consensus 36 ~~~VlivG~GglGs~~a~~La~~GVg~i~lvD~D 69 (292) T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 69 (292) T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 5988998868899999999998289708998494 No 282 >3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A* Probab=94.49 E-value=0.052 Score=29.33 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=31.6 Q ss_pred CCCCEEEECCC-HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 67766898798-7999999999965990899835888 Q T0604 106 LTERPIVIGFG-PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaG-pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |+|.|+|.||+ --|...|..|++.|++|++..|... T Consensus 1 mnk~vlItGas~GiG~aia~~l~~~G~~V~l~~r~~~ 37 (247) T 3dii_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK 37 (247) T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9988999668988999999999987998999979888 No 283 >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Probab=94.49 E-value=0.023 Score=31.54 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=78.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 677668987987999999999965----9908998358883211010001243542360234554135565212404553 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQM----GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS 181 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~----G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t 181 (549) ..++|+|||+|+.|+.+|..|++. |..|+++++......+. + T Consensus 179 ~~~~vvViGgG~~g~e~A~~l~~~~~~~~~~v~~~~~~~~~l~~~---------------------------l------- 224 (493) T 1m6i_A 179 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI---------------------------L------- 224 (493) T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT---------------------------S------- T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH---------------------------H------- T ss_conf 297699988884113567765565304674389931333332012---------------------------3------- Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC Q ss_conf 22000211789999999668951001367641000127999999999999669889981343320405875899998678 Q T0604 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG 261 (549) Q Consensus 182 ~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g 261 (549) ...+...+.+.+++.|++++.++.+..+..++..+ .+.+.+| T Consensus 225 -------------------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~-~v~~~dg 266 (493) T 1m6i_A 225 -------------------------------------PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKL-LIKLKDG 266 (493) T ss_dssp -------------------------------------CHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEE-EEEETTS T ss_pred -------------------------------------HHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCEE-EEEECCC T ss_conf -------------------------------------26776666656651596230470589998259879-9995289 Q ss_pred CEEEECEEEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 4897056899318876799999996697111 Q T0604 262 EEIKSRHVVLAVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 262 ~~i~ad~VVlAtGhsard~~~~l~~~Gi~~~ 292 (549) ++++||.||+|+|..... +++...|+.+. T Consensus 267 ~~~~aD~Vi~a~G~~Pn~--~l~~~~gl~~~ 295 (493) T 1m6i_A 267 RKVETDHIVAAVGLEPNV--ELAKTGGLEID 295 (493) T ss_dssp CEEEESEEEECCCEEECC--TTHHHHTCCBC T ss_pred CEEEECEEEEEECCCCCC--HHHHHCCCCEE T ss_conf 788638899974644473--66875696272 No 284 >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Probab=94.47 E-value=0.054 Score=29.24 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=22.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECC Q ss_conf 767766898798799999999996599-08998358 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERG 139 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg 139 (549) ....+|+|.|+|+-|++|+..+...|. +|+++++. T Consensus 189 ~~g~~vlI~GaG~vG~~aiqlak~~G~~~Vi~~~~~ 224 (373) T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN 224 (373) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 998999998968999999999998399879999699 No 285 >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Probab=94.47 E-value=0.021 Score=31.85 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=35.7 Q ss_pred CCCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8874302689854201235-335789999999999999999999975 Q T0604 500 GKDFQSVNLKGFYPAGEGA-GYAGGILSAGIDGIKVAEAVARDIVAA 545 (549) Q Consensus 500 ~~tleS~~i~GLY~~GEga-GyagGI~saa~~G~~~a~~i~~~~~~~ 545 (549) |+.|+ .++||+|.||..+ |-.+-|..|..+|..+|+.|...+.+. T Consensus 352 d~~~~-T~~pgVyA~GDv~~Gp~~~i~~A~~~g~~aa~~i~~~l~~~ 397 (460) T 1cjc_A 352 MEGRV-VDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAG 397 (460) T ss_dssp ETTEE-TTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCEE-ECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 78607-64599899984225842899999999999999999764417 No 286 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} Probab=94.47 E-value=0.039 Score=30.09 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=16.5 Q ss_pred ECEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 05689931887679999999669711 Q T0604 266 SRHVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 266 ad~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) .+.+|+..|.-++...++|...|... T Consensus 156 ~~v~v~G~G~~g~~~~~~~~~~g~~v 181 (293) T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKV 181 (293) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEE T ss_conf 99999892699999999998579989 No 287 >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Probab=94.46 E-value=0.073 Score=28.42 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCEE--CCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 9999999999966988998134332040--58758999986784897056899318 Q T0604 221 TMIEKMRATIIELGGEIRFSTRVDDLHM--EDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 221 ~vv~~L~~~l~~~G~~i~~~t~V~~i~~--~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) .+.+.+-+.+.-.|+.+..++.|..|.. +++++.+|...+|+++.|+.||.... T Consensus 379 EIpQ~FcR~~AV~Gg~Y~L~~~I~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~~s 434 (650) T 1vg0_A 379 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS 434 (650) T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGG T ss_pred HHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCEEEEECCCCCEEECCEEEECCC T ss_conf 78899999987539689858854256760688717889826992997047998943 No 288 >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} Probab=94.46 E-value=0.041 Score=30.01 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 67766898798799999999996599089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) |+-||.|+|+|.-|.+.|..|++. .+|+++.|.. T Consensus 1 m~MkI~I~GaGaiG~~~a~~L~~~-~~V~~~~r~~ 34 (307) T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLSLY-HDVTVVTRRQ 34 (307) T ss_dssp -CCEEEEECCSHHHHHHHHHHHTT-SEEEEECSCH T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCEEEEECCH T ss_conf 998899999559999999999774-9869998888 No 289 >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrate binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* Probab=94.45 E-value=0.023 Score=31.53 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=39.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEE---CCCCEEEECEEEEECC Q ss_conf 999999999999669889981343320405875899998---6784897056899318 Q T0604 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL---SNGEEIKSRHVVLAVG 274 (549) Q Consensus 220 ~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t---~~g~~i~ad~VVlAtG 274 (549) ..+.+.|. +.++.+|+++++|+.|..+++++..+.. .+++++.||+||+|+. T Consensus 241 ~~l~~~La---~~l~~~I~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~a~p 295 (498) T 2iid_A 241 DKLPTAMY---RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 295 (498) T ss_dssp THHHHHHH---HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSC T ss_pred HHHHHHHH---HHCCCEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEECC T ss_conf 99999999---85798499667179999949959999971664444222452487348 No 290 >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Probab=94.44 E-value=0.064 Score=28.79 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=35.1 Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 8877677668987987999999999965990899835888 Q T0604 102 APENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 102 ~~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ..+.+.-+|-|||.|.-|..-|..|++.|++|.+++|.+. T Consensus 4 ~~~~~~mkIgvIG~G~mG~~ia~~L~~~G~~V~v~~r~~~ 43 (306) T 3l6d_A 4 SDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG 43 (306) T ss_dssp CCCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH T ss_pred CCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 7788999689981599999999999978996999809999 No 291 >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Probab=94.44 E-value=0.06 Score=28.96 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=5.3 Q ss_pred HHHHHHHCC-CCCCC Q ss_conf 999988612-22055 Q T0604 463 IREAIPAFD-RKIKG 476 (549) Q Consensus 463 l~~~l~~f~-~~~~G 476 (549) +.+++..+. .++.| T Consensus 333 i~~A~~~l~~gk~~G 347 (360) T 1piw_A 333 VHEAFERMEKGDVRY 347 (360) T ss_dssp HHHHHHHHHHTCCSS T ss_pred HHHHHHHHHCCCCCE T ss_conf 999999998699833 No 292 >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 5adh_A* ... Probab=94.42 E-value=0.062 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=17.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEEC Q ss_conf 67766898798799999999996599-0899835 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVER 138 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlEr 138 (549) +.++|+|.|+|..|++++..|+..|. +|+.+++ T Consensus 191 ~g~~VlV~GaG~~g~~~~~~a~~~g~~~Vi~~~~ 224 (374) T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 224 (374) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 9998999898768999999999809997999968 No 293 >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Probab=94.37 E-value=0.064 Score=28.79 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=32.1 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCC Q ss_conf 7767766898798799999999996599-08998358883 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEV 142 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~v 142 (549) .-|.+||.|||+|--|-.+|+.|+..++ +..|++..+.. T Consensus 11 ~~mr~KV~IiGaG~VG~~~A~~l~~~~~~el~L~Di~~~~ 50 (328) T 2hjr_A 11 VIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGV 50 (328) T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTH T ss_pred EEECCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCH T ss_conf 6304709999969899999999967999879998489971 No 294 >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Probab=94.36 E-value=0.062 Score=28.86 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf 67766898798799999999996599-0899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~ 141 (549) |.+||.|||+|.-|-.+|+.|+..+. ++.|++.... T Consensus 1 M~~KV~IiGaG~VG~~~a~~l~~~~l~el~LiD~~~~ 37 (309) T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG 37 (309) T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSS T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9973999997989999999998389987999869998 No 295 >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Probab=94.30 E-value=0.041 Score=30.00 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=39.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 9999999999996698899813433204058758999986784897056899318 Q T0604 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 220 ~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) ..+++.+.+.+. +..+++++.+..+....+.+..+.+.+|..+.++.++.+.- T Consensus 202 ~~l~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 254 (516) T 1rsg_A 202 DSVVQRIAQSFP--QNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVP 254 (516) T ss_dssp HHHHHHHHTTSC--GGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCC T ss_pred HHHHHHHHHHCC--CCCEEEEEECCEEECCCCCCCEEEECCCCEEECCEEEEEEC T ss_conf 899999975365--55436532000000036643203413784122123899542 No 296 >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Probab=94.30 E-value=0.051 Score=29.39 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=32.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..||.|||.|--|-.-|..|+++|++|.+++|.+.. T Consensus 28 ~pKIgiIG~G~mG~~lA~~L~~aG~~V~v~dr~~~~ 63 (215) T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKR 63 (215) T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 995999894889999999999879979995798799 No 297 >3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Probab=94.19 E-value=0.064 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.4 Q ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCEEEEEECCCCCCCC Q ss_conf 776689879879999999999-659908998358883211 Q T0604 107 TERPIVIGFGPCGLFAGLVLA-QMGFNPIIVERGKEVRER 145 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La-~~G~~V~VlErg~~vg~r 145 (549) ..+|||+|.|.-|-..|-.|. +.|..++++|..+..-.+ T Consensus 39 ~~~ViI~G~Gr~G~~la~~L~~~~~~~vvvID~d~~~~~~ 78 (183) T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ 78 (183) T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHH T ss_conf 9978998987899999999999789859999387899998 No 298 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Probab=94.18 E-value=0.043 Score=29.83 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHH-HHHHHHCCCEEEEEECCCCC Q ss_conf 7766898798799999-99999659908998358883 Q T0604 107 TERPIVIGFGPCGLFA-GLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~A-Al~La~~G~~V~VlErg~~v 142 (549) .+||.+||-|-+||.+ |..|.++|++|.+.++.+.. T Consensus 18 ~k~i~~iGiggsG~salA~~l~~~G~~V~~~D~~~~~ 54 (475) T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV 54 (475) T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH T ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 7789999966999999999999788939999289997 No 299 >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; NP_070841.1, 3-hydroxyacyl-COA dehydrogenase (HBD-9), structural genomics; HET: PE8; 2.00A {Archaeoglobus fulgidus dsm 4304} Probab=94.14 E-value=0.043 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879879999999999659908998358883 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .--||.|||||.-|.--|+.++ .|++|+++|..+.. T Consensus 11 ~~mkV~ViGaG~mG~~iA~~~a-~g~~V~l~d~~~~~ 46 (293) T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKA 46 (293) T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHH T ss_pred CCCEEEEECCCHHHHHHHHHHH-CCCCEEEEECCHHH T ss_conf 8878999891799999999997-79934999898999 No 300 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} Probab=94.14 E-value=0.051 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=28.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 776689879879999999999659908998 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIV 136 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~Vl 136 (549) .++|+|||+|..+.-=+..|.+.|.+|+|+ T Consensus 31 ~k~vLVvGgG~vA~rK~~~Ll~~ga~V~Vi 60 (223) T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVV 60 (223) T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEE T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE T ss_conf 885999899899999999996389989999 No 301 >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Probab=94.08 E-value=0.037 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=31.7 Q ss_pred CCCEEEECCCHHHHHH-HHHHHHCCCEEEEEECCCCC Q ss_conf 7766898798799999-99999659908998358883 Q T0604 107 TERPIVIGFGPCGLFA-GLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~A-Al~La~~G~~V~VlErg~~v 142 (549) .+||.|||.|-+||.+ |..|.+.|++|.+-++.... T Consensus 19 ~k~i~~iGiggsG~s~lA~~l~~~G~~V~gsD~~~~~ 55 (491) T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNP 55 (491) T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCH T ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 7879999857999999999999689929999389997 No 302 >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Probab=94.07 E-value=0.05 Score=29.47 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.9 Q ss_pred CEEEE-CCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 66898-7987999999999965990899835888 Q T0604 109 RPIVI-GFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVV-GaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ||.|| |+|--|...|..|++.|++|+|.-|.+. T Consensus 2 kIaiigGaG~~G~aLA~~la~~Gh~V~l~~R~~e 35 (212) T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212) T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 8999956679999999999978997999839999 No 303 >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Probab=93.90 E-value=0.076 Score=28.31 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=34.3 Q ss_pred CCCCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 8776776689879-87999999999965990899835888 Q T0604 103 PENLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 103 ~~~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ...|+.||+|.|| |.-|-..+-.|.++|++|+++.|... T Consensus 7 ~~~mk~KIlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318) T 2r6j_A 7 ENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318) T ss_dssp --CCCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 5699983999899958999999999978697999978964 No 304 >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structural genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Probab=93.83 E-value=0.054 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=28.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 677668987987999999999965990899835 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlEr 138 (549) ..++|+|||+|.+|+-.|..|++.+.++++.-+ T Consensus 211 ~gK~VlVVG~g~Sa~Dia~~l~~~a~~~~~~s~ 243 (447) T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSL 243 (447) T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC T ss_conf 667599989874599999999976886799974 No 305 >2v65_A LDH-A, L-lactate dehydrogenase A chain; oxidoreductase, NAD, FISH, cytoplasm, glycolysis, psychrophIle; 2.35A {Champsocephalus gunnari} Probab=93.81 E-value=0.11 Score=27.40 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=31.8 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC Q ss_conf 87767766898798799999999996599--0899835888 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKE 141 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~ 141 (549) |.....||.|||+|.-|-..|+.|+..++ +..|++..++ T Consensus 16 ~~~~~~KI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 56 (331) T 2v65_A 16 PVGSRSKVTVVGVGMVGMASAISILLKDLCDELAMVDVMED 56 (331) T ss_dssp CCCCSSCEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 77799869998978889999999985799887999838998 No 306 >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Probab=93.81 E-value=0.18 Score=26.00 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=30.1 Q ss_pred CCCCCCCCCEEEE-C-CCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7887767766898-7-987999999999965990899835888 Q T0604 101 KAPENLTERPIVI-G-FGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 101 ~~~~~~~~rVVVV-G-aGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .++.+++-|++|| | ++--|...|..|++.|++|++..|... T Consensus 19 ~~~~~l~GK~alITG~s~GIG~aia~~la~~Ga~V~i~~r~~~ 61 (302) T 1w6u_A 19 LPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD 61 (302) T ss_dssp SCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 8998989998999377888999999999986998999979888 No 307 >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolecular disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Probab=93.76 E-value=0.13 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=16.3 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 6776689879-87999999999965990899835 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlEr 138 (549) ...+|+|+|| |+-|++++..+...|.+++++++ T Consensus 169 ~g~~vlV~gg~G~vG~~aiqla~~~G~~vi~v~~ 202 (347) T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDG 202 (347) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 8980799538669999999999982986677511 No 308 >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding motifs, MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Probab=93.71 E-value=0.07 Score=28.53 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCE-EEEEEC Q ss_conf 77668987987999999999965990-899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFN-PIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~-V~VlEr 138 (549) ..+|+|||+|.-|..+|..|++.|+. .+|++. T Consensus 31 ~~~VliiG~GglGs~~a~~La~~Gvg~i~lvD~ 63 (249) T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63 (249) T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 597899886889999999999849986999768 No 309 >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Probab=93.69 E-value=0.098 Score=27.61 Aligned_cols=10 Identities=10% Similarity=0.188 Sum_probs=4.1 Q ss_pred HHHHHHCCCC Q ss_conf 9999966971 Q T0604 281 FEMLHERGVY 290 (549) Q Consensus 281 ~~~l~~~Gi~ 290 (549) .++++++|.. T Consensus 223 ~~~ak~lGa~ 232 (398) T 1kol_A 223 LAHAKAQGFE 232 (398) T ss_dssp HHHHHHTTCE T ss_pred HHHHHHCCCC T ss_conf 9999980992 No 310 >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.88A {Caenorhabditis elegans} Probab=93.61 E-value=0.051 Score=29.41 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=30.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC Q ss_conf 6776689879879999999999659--90899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~ 141 (549) ..+||.|||.|--||..|..+|..| ++|+.+|..+. T Consensus 8 ~~~KI~ViGlGyVGl~~a~~lA~~g~~~~V~g~D~d~~ 45 (481) T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA 45 (481) T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHH T ss_conf 66759998778767999999981599985999989999 No 311 >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Probab=93.60 E-value=0.12 Score=27.07 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=31.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77668987987999999999965990899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+||+|.|+|.-|-..+-.|.+.|++|+.+.|... T Consensus 3 m~kiLItGaG~iG~~l~~~L~~~g~~V~~~~R~~~ 37 (286) T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ 37 (286) T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 88699989219999999999978598999978712 No 312 >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Probab=93.58 E-value=0.05 Score=29.43 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=28.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 668987987999999999965990899835888 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +|.|||.|.-||.+|+.++ .|++|+.+|..+. T Consensus 2 KI~ViGlGyVGl~~a~~~a-~g~~V~g~D~~~~ 33 (402) T 1dlj_A 2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS 33 (402) T ss_dssp EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH T ss_pred EEEEECCCHHHHHHHHHHH-CCCCEEEEECCHH T ss_conf 6999898767999999997-6998999989999 No 313 >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Probab=93.48 E-value=0.079 Score=28.22 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=15.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 76689879879999999999659908998358 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg 139 (549) .+|+|+|+|.+|+.|+..+.+.|..|.+++.. T Consensus 173 akv~viG~G~~g~~A~~~a~~lga~v~~~d~~ 204 (401) T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTR 204 (401) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC T ss_pred CEEEEECCCCHHHHHHHHHCCCEEEEEEECCC T ss_conf 54899777622666998853772699984364 No 314 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} Probab=93.45 E-value=0.087 Score=27.94 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=9.5 Q ss_pred EEEEECCCCHHHHHHHHHHCCC Q ss_conf 6899318876799999996697 Q T0604 268 HVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 268 ~VVlAtGhsard~~~~l~~~Gi 289 (549) .+|+..|.-++....+|...|. T Consensus 160 v~viG~G~~g~~~a~~l~~~g~ 181 (300) T 2rir_A 160 VAVLGLGRTGMTIARTFAALGA 181 (300) T ss_dssp EEEECCSHHHHHHHHHHHHTTC T ss_pred EEEECCCHHHHHHHHHHHHCCC T ss_conf 9998988899999999987799 No 315 >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* Probab=93.41 E-value=0.049 Score=29.48 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC Q ss_conf 76689879879999999999659--90899835888 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKE 141 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G--~~V~VlErg~~ 141 (549) .+|.|||.|--||..|..||..| ++|+.+|.++. T Consensus 6 ~kI~ViGlGyVGl~~a~~lA~~g~~~~V~g~Did~~ 41 (467) T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES 41 (467) T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 779998978407999999997399984999989999 No 316 >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Probab=93.36 E-value=0.08 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=28.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 6689879879999999999659908998358 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg 139 (549) +|.|+|+|.-|...|..|++.|.+|.++-|. T Consensus 2 kI~ViGaGa~GtAlA~~l~~~g~~V~l~~r~ 32 (335) T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (335) T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 8999896999999999999889968999727 No 317 >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Probab=93.33 E-value=0.12 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=30.1 Q ss_pred CCCCEEEECCCHHHHHH-HHHHHHCCCEEEEEECC Q ss_conf 67766898798799999-99999659908998358 Q T0604 106 LTERPIVIGFGPCGLFA-GLVLAQMGFNPIIVERG 139 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~A-Al~La~~G~~V~VlErg 139 (549) ..++|-+||-|-+||.+ |..|.++|++|..-|.. T Consensus 3 ~~k~ih~iGigg~Gms~lA~~L~~~G~~V~gsD~~ 37 (326) T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAK 37 (326) T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESS T ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 87789999848889999999999789929999799 No 318 >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A Probab=93.30 E-value=0.13 Score=26.76 Aligned_cols=26 Identities=15% Similarity=-0.015 Sum_probs=19.8 Q ss_pred ECEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 05689931887679999999669711 Q T0604 266 SRHVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 266 ad~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) -..+|+--||-|+-...++..+|.++ T Consensus 205 ~~L~IfGaGhva~~La~la~~lgf~V 230 (386) T 2we8_A 205 PRMLVFGAIDFAAAVAQQGAFLGYRV 230 (386) T ss_dssp CEEEEECCSTHHHHHHHHHHHTTCEE T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEE T ss_conf 62688588567999999998649305 No 319 >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* Probab=93.25 E-value=0.17 Score=26.09 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=12.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 766898798799999999996599089983 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlE 137 (549) .+|+|+|+|-+|+.|+..+.+.|..|.+++ T Consensus 169 akv~ViGag~ag~~A~~~a~~lga~v~~~d 198 (377) T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLD 198 (377) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE T ss_pred CEEEEECCCCCCCHHHHHHHHCCCEEEECC T ss_conf 548997787425166888862798899515 No 320 >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, transferase/biosynthetic protein complex; 1.98A {Escherichia coli K12} PDB: 1zfn_A* 1zkm_A Probab=93.25 E-value=0.094 Score=27.73 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCE-EEEEEC Q ss_conf 77668987987999999999965990-899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFN-PIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~-V~VlEr 138 (549) ..+|+|||+|.-|-.+|..|++.|+. .+|++. T Consensus 28 ~~~VliiG~GglGs~ia~~La~~Gvg~i~lvD~ 60 (251) T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 60 (251) T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEECC T ss_conf 698899866889999999998645882576178 No 321 >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Probab=93.24 E-value=0.096 Score=27.67 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=30.7 Q ss_pred CCCEEEECCCHHHHHH-HHHHHHCCCEEEEEECCCC Q ss_conf 7766898798799999-9999965990899835888 Q T0604 107 TERPIVIGFGPCGLFA-GLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~A-Al~La~~G~~V~VlErg~~ 141 (549) .-||-+||.|-+||.+ |..|.++|++|...++... T Consensus 12 ~m~ih~iGigg~Gms~lA~~L~~~G~~V~gsD~~~~ 47 (469) T 1j6u_A 12 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET 47 (469) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC T ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 777999988699999999999968995999829999 No 322 >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Probab=93.22 E-value=0.17 Score=26.04 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=31.7 Q ss_pred CCCCCCCCCCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 66566777887767766898--79879999999999659908998358 Q T0604 94 MEYKFVAKAPENLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 94 ~~~~~~~~~~~~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg 139 (549) ..+..|...-+++.-|+++| |++--|...|..|++.|++|++..+. T Consensus 7 ~~~~~~~~~~~~L~GK~alITGgs~GIG~aiA~~la~~G~~V~i~~~~ 54 (274) T 1ja9_A 7 ITSSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS 54 (274) T ss_dssp ---------CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC T ss_conf 988999999988999989996898689999999999879989997189 No 323 >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Probab=93.22 E-value=0.14 Score=26.64 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=34.8 Q ss_pred CCCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 776776689879-8799999999996599089983588832 Q T0604 104 ENLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 104 ~~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) -+|+++|+|.|| |.-|-..+..|.+.|++|+.+.|..... T Consensus 11 ~~M~k~vLITGatGfIGs~l~~~Ll~~g~~V~~i~r~~~~~ 51 (335) T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSD 51 (335) T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSC T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 80675499975887899999999997849899998999765 No 324 >2qyt_A 2-dehydropantoate 2-reductase; APC81190, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Porphyromonas gingivalis W83} Probab=93.16 E-value=0.043 Score=29.88 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=29.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC------EEEEEECCCC Q ss_conf 7766898798799999999996599------0899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF------NPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~------~V~VlErg~~ 141 (549) +-||.|||+|.-|.+-|..|+++|. +|+++-|+.. T Consensus 8 ~MkI~IvGaGaiG~~~a~~L~~~g~~~~~~~~Vt~i~R~~~ 48 (317) T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAH 48 (317) T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHH T ss_conf 89899999689999999999975999887416799932899 No 325 >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Probab=93.15 E-value=0.15 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=29.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf 67766898798799999999996599-0899835888 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~ 141 (549) ++.||.|||+|--|..+|+.|+..+. +..|++.... T Consensus 3 ~~~KI~IiGaG~VG~~~a~~l~~~~~~el~LiD~~~~ 39 (322) T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN 39 (322) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9997999897989999999997189987999879998 No 326 >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii ME49} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 1sov_A 1sow_A* 3czm_A* Probab=93.13 E-value=0.17 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.8 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf 767766898798799999999996599-0899835888 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~ 141 (549) ...+||.|||+|--|..+|+.|+..++ ++.|++.... T Consensus 7 ~~~~KI~IiGaG~VG~~~A~~l~~~~l~el~LiDi~~~ 44 (331) T 1pzg_A 7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 44 (331) T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 78980899897989999999997079987999928999 No 327 >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Probab=93.12 E-value=0.063 Score=28.82 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=33.8 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCC Q ss_conf 877677668987987999999999965-9908998358883 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQM-GFNPIIVERGKEV 142 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~-G~~V~VlErg~~v 142 (549) ...|.++|+|+|+|-.|-.+|..|++. +++++|.+|..+- T Consensus 19 ~~~m~kkIlvlGaG~vG~~~~~~L~~~~~~~i~v~~r~~~~ 59 (467) T 2axq_A 19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLAN 59 (467) T ss_dssp ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHH T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH T ss_conf 13578819998988899999999982899349999699999 No 328 >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Probab=93.08 E-value=0.12 Score=27.02 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.1 Q ss_pred HHHHHHCCCC Q ss_conf 9999966971 Q T0604 281 FEMLHERGVY 290 (549) Q Consensus 281 ~~~l~~~Gi~ 290 (549) .++++++|.. T Consensus 223 l~~a~~lGa~ 232 (398) T 2dph_A 223 LKLLSDAGFE 232 (398) T ss_dssp HHHHHTTTCE T ss_pred HHHHHHCCCE T ss_conf 1234314750 No 329 >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A Probab=93.04 E-value=0.2 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=18.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 77668987987999999999965990899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlEr 138 (549) +.+|+|+|+|-+|+.|+..+.+.|..|.+++. T Consensus 167 pa~v~viGaG~ag~~A~~ta~~lGa~v~~~d~ 198 (361) T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDI 198 (361) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECC T ss_conf 70367725740234788999864986999727 No 330 >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 1yov_B 1r4m_B 1r4n_B* Probab=93.02 E-value=0.13 Score=26.82 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=29.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECC Q ss_conf 7766898798799999999996599-08998358 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERG 139 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg 139 (549) ..||+|||+|.-|...|..|++.|+ ++.|++.. T Consensus 40 ~~kVlvvG~GglG~ei~k~La~~Gvg~i~ivD~D 73 (434) T 1tt5_B 40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 73 (434) T ss_dssp TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 6929998978899999999998089869999799 No 331 >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Probab=93.02 E-value=0.12 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=32.7 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879-879999999999659908998358883 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +++||+|.|| |.-|-..+-.|.+.|++|+++.|.... T Consensus 3 ~k~kILVtGatG~iG~~lv~~L~~~g~~V~~l~R~~~~ 40 (308) T 1qyc_A 3 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 40 (308) T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 99989998998289999999999787979999889755 No 332 >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein ligase, unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Probab=93.01 E-value=0.097 Score=27.64 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=29.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCC Q ss_conf 7766898798799999999996599--08998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~v 142 (549) .+||.|||+|--|-.+|+.|+..|+ +++|++..+.+ T Consensus 14 ~~KI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~e~~ 51 (303) T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT 51 (303) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--- T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCH T ss_conf 77499999798999999999845999869999799871 No 333 >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Probab=93.00 E-value=0.12 Score=27.00 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=30.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC Q ss_conf 7766898798799999999996599--0899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~ 141 (549) .+||.|||+|.-|..+|+.|+..|+ +..|++.... T Consensus 5 ~~Kv~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 41 (318) T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD 41 (318) T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9879998979899999999981799877999818997 No 334 >3bmj_A Pteridine reductase; PTR1, short chain dehydrogenase, inhibitor, oxidoreductase; HET: NAP DX7; 1.60A {Trypanosoma brucei brucei} PDB: 3bmc_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmd_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3jq6_A* 3jq7_A* 3jq8_A* 3jq9_A* 3jqa_A* 3jqb_A* ... Probab=92.97 E-value=0.14 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=31.3 Q ss_pred CCCCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 87767766898--798799999999996599089983588 Q T0604 103 PENLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 103 ~~~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ...|..||+|| |++--|...|..|++.|++|++..|.. T Consensus 18 ~~~l~gkVAlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~ 57 (288) T 3bmj_A 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNS 57 (288) T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSC T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9998999899948788899999999998799899996980 No 335 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Probab=92.95 E-value=0.12 Score=27.06 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=30.8 Q ss_pred CCCEEEECCCHHHHHH-HHHHHHCCCEEEEEECCC Q ss_conf 7766898798799999-999996599089983588 Q T0604 107 TERPIVIGFGPCGLFA-GLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGaGpAGL~A-Al~La~~G~~V~VlErg~ 140 (549) .+||.+||-|-+||.+ |..|+++|++|.+-++.. T Consensus 19 g~~ih~iGigg~GmsalA~~l~~~G~~V~gsD~~~ 53 (524) T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANI 53 (524) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC T ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 98899996788999999999996899499990999 No 336 >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Probab=92.73 E-value=0.083 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=33.3 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7677668987987999999999965990899835888 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|..||-|||-|--|.-.|..|++.|++|.+++|.+. T Consensus 3 ~m~mkIg~IGlG~MG~~la~~L~~~G~~v~v~dr~~~ 39 (299) T 1vpd_A 3 AMTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE 39 (299) T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 6445188981089889999999978996999939999 No 337 >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 1llc_A* Probab=92.73 E-value=0.15 Score=26.43 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=30.7 Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 7767766898798799999999996599--089983588 Q T0604 104 ENLTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 104 ~~~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) +...+||.|||+|.-|..+|+.|+..|+ +..|++... T Consensus 6 ~k~~~KV~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 44 (326) T 2zqz_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326) T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 788997999898989999999998279988799992788 No 338 >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Probab=92.72 E-value=0.19 Score=25.88 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=31.9 Q ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 76776689879-87999999999965990899835888 Q T0604 105 NLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +.+.||+|+|| |.-|-..+-.|.+.|++|.++-|... T Consensus 8 s~k~kVlV~GaTG~iG~~iv~~Ll~~g~~V~~l~R~~~ 45 (346) T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGP 45 (346) T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSC T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 99991999899848999999999968997899989998 No 339 >3gr6_A Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl reductase, NADP, triclosan, oxidoreductase; HET: NAP TCL; 2.28A {Staphylococcus aureus} PDB: 3gns_A* 3gnt_A Probab=92.61 E-value=0.12 Score=26.96 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=30.5 Q ss_pred CCCEEEECCC---HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 7766898798---79999999999659908998358883 Q T0604 107 TERPIVIGFG---PCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaG---pAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+.++|.||+ --|..+|..|++.|++|++..|.+.. T Consensus 10 gK~~lITGass~~GIG~aiA~~la~~Ga~Vvi~~r~~~~ 48 (260) T 3gr6_A 10 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS 48 (260) T ss_dssp SCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSHHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 998999899998479999999999879999999688888 No 340 >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Probab=92.61 E-value=0.13 Score=26.87 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=29.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 77668987987999999999965990899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlEr 138 (549) .++|+|||+|..+.-=+..|.+.|.+|+|+-. T Consensus 12 ~~~vlvvGgG~vA~rK~~~ll~~ga~v~via~ 43 (457) T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (457) T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEES T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECC T ss_conf 98399988989999999999868987999938 No 341 >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Probab=92.60 E-value=0.16 Score=26.21 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.6 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 776689879-87999999999965990899835888 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+||+|+|| |.-|...+-.|.++|++|.++-|.+. T Consensus 3 ~kkIlI~GatG~iG~~l~~~Ll~~g~~V~~~~R~~~ 38 (206) T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (206) T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 888999999988999999999978698999984825 No 342 >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Probab=92.59 E-value=0.19 Score=25.74 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=24.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 76776689879879999999999659908998 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIV 136 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~Vl 136 (549) ....+|+|.|+|+.|+.++..+...|..++++ T Consensus 212 ~~g~~VlI~GaG~vG~~ai~~a~~~g~~~v~~ 243 (404) T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243 (404) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEE T ss_conf 89899999898889999999999848964999 No 343 >2eez_A Alanine dehydrogenase; TTHA0216, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.71A {Thermus thermophilus HB8} Probab=92.58 E-value=0.23 Score=25.29 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=14.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 766898798799999999996599089983 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlE 137 (549) .+|+|+|+|.+|+.|+..+.+.|..|..++ T Consensus 167 ~kv~v~GaG~ag~~Ai~ta~~lGa~v~~~d 196 (369) T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILD 196 (369) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE T ss_pred EEEEEECCCEECHHHHHHHHHCCCEEEEEC T ss_conf 069995796034899999863698699965 No 344 >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia SP} Probab=92.56 E-value=0.13 Score=26.89 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=32.1 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879-879999999999659908998358883 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..++|.|||+ |.=|...|..|.+.|++|.+++|.+.. T Consensus 10 ~~k~i~iiG~~G~mG~~~a~~l~~~g~~v~~~d~~~~~ 47 (286) T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEG 47 (286) T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 59999998089899999999999789969999388899 No 345 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Probab=92.53 E-value=0.12 Score=27.01 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=31.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 66898798799999999996599089983588832 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) ||.|||.|.-|-.-|..|.+.|+.|.+++|.+... T Consensus 2 KI~iIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~ 36 (279) T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTC 36 (279) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 89999009999999999996889799998999999 No 346 >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Probab=92.52 E-value=0.17 Score=26.09 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=30.0 Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6689879-87999999999965990899835888 Q T0604 109 RPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ||+|+|| |.-|-..+-.|.++|++|+++-|.+. T Consensus 2 kIlV~GatG~iG~~l~~~L~~~G~~V~~~~R~~~ 35 (221) T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG 35 (221) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 6999999848999999999978598999989867 No 347 >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Probab=92.52 E-value=0.16 Score=26.20 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=10.9 Q ss_pred EEEEECCCCHHHHHHHHHHCCC Q ss_conf 6899318876799999996697 Q T0604 268 HVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 268 ~VVlAtGhsard~~~~l~~~Gi 289 (549) .+|+..|+.||-....|...|. T Consensus 132 vlilGaGGaarai~~~l~~~g~ 153 (275) T 2hk9_A 132 ILVLGAGGASRAVIYALVKEGA 153 (275) T ss_dssp EEEECCSHHHHHHHHHHHHHTC T ss_pred EEEECCHHHHHHHHHHHHHCCC T ss_conf 7886633889999999997599 No 348 >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Probab=92.48 E-value=0.18 Score=26.00 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=29.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf 7766898798799999999996599-0899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~ 141 (549) ++||.|||+|.-|-.+|+.|++.+. +..|++..+. T Consensus 4 ~~KV~IiGaG~VG~~~a~~l~~~~~~el~L~Di~~~ 39 (317) T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG 39 (317) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 997999898989999999998289987999958999 No 349 >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* Probab=92.41 E-value=0.17 Score=26.16 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=18.2 Q ss_pred ECCCCEEEECEEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 8678489705689931887679999999669711 Q T0604 258 LSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 258 t~~g~~i~ad~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) +.-|..-++..+|+..|.-+.-.-+.+..+|... T Consensus 165 ~~~g~v~~~kv~viG~G~~g~~a~~~a~~lGa~v 198 (384) T 1l7d_A 165 TAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVV 198 (384) T ss_dssp ETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEE T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEE T ss_conf 1567877750699725467767889998669879 No 350 >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Probab=92.41 E-value=0.11 Score=27.26 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=4.9 Q ss_pred CCEEEECCCH Q ss_conf 7668987987 Q T0604 108 ERPIVIGFGP 117 (549) Q Consensus 108 ~rVVVVGaGp 117 (549) -.|+-+|.+. T Consensus 65 G~V~~~g~~v 74 (339) T 1rjw_A 65 GIVEEVGPGV 74 (339) T ss_dssp EEEEEECTTC T ss_pred EEEEEECCCC T ss_conf 9997631577 No 351 >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Probab=92.38 E-value=0.22 Score=25.46 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=13.4 Q ss_pred CEEEEECCCCHHHHHHHHHHCCC Q ss_conf 56899318876799999996697 Q T0604 267 RHVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 267 d~VVlAtGhsard~~~~l~~~Gi 289 (549) ..+|+..|+.||-...-|.+.|. T Consensus 121 ~vlilGaGGaa~ai~~al~~~g~ 143 (271) T 1nyt_A 121 RILLIGAGGASRGVLLPLLSLDC 143 (271) T ss_dssp EEEEECCSHHHHHHHHHHHHTTC T ss_pred EEEEEECHHHHHHHHHHHHHCCC T ss_conf 79997047888999999996798 No 352 >6ldh_A M4 APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.00A {Squalus acanthias} SCOP: c.2.1.5 d.162.1.1 PDB: 8ldh_A* 1ldm_A* 9ldt_A* 9ldb_A* 1i10_A* 3ldh_A* 3h3f_A* 1t2f_A* 1i0z_A* 5ldh_A* 1v6a_A* Probab=92.37 E-value=0.28 Score=24.74 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=29.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 7766898798799999999996599--089983588 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ..||.|||||--|-.+|+.|+..++ +..|++..+ T Consensus 21 ~~KV~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~ 56 (330) T 6ldh_A 21 YNKITVVGVGAVGMACAISILMKDLADEVALVDVME 56 (330) T ss_dssp SSEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSCH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 985999897989999999998379988699992899 No 353 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=92.28 E-value=0.25 Score=25.05 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=30.4 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 776689879-8799999999996599089983588 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .+||+|.|| |.-|-..+-.|.++|++|+.+-|.+ T Consensus 4 m~kIlVtGatG~iG~~l~~~Ll~~G~~V~~~~R~~ 38 (227) T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227) T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 99899988999899999999997839899998685 No 354 >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomics; HET: ADN; 1.40A {Thermus thermophilus HB8} SCOP: c.2.1.2 Probab=92.26 E-value=0.2 Score=25.73 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=29.5 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6776689879-87999999999965990899835888 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |.|.++|.|| +-=|...|..|++.|++|++..|.+. T Consensus 1 m~K~alITGas~GIG~aiA~~la~~Ga~Vi~~~~~~~ 37 (242) T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE 37 (242) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9989999788888999999999987998999978632 No 355 >3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Probab=92.25 E-value=0.052 Score=29.36 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECC Q ss_conf 79999999999996698899813433204058758999986784897056899318 Q T0604 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtG 274 (549) ...+.+.|.+.+ .+..++++++|+.|..+++.+. +.+ ++..+.+|.||+|+. T Consensus 235 ~~~~~~~l~~~~--~~~~v~~~~~V~~I~~~~~~~~-~~~-~~~~~~~d~VV~a~p 286 (475) T 3lov_A 235 LESLIERLEEVL--ERSEIRLETPLLAISREDGRYR-LKT-DHGPEYADYVLLTIP 286 (475) T ss_dssp HHHHHHHHHHHC--SSCEEESSCCCCEEEEETTEEE-EEC-TTCCEEESEEEECSC T ss_pred HHHHHHHHHHHH--CCCCEEEEEEEEEEEEECCEEE-EEC-CCCCEEEEEEEECCC T ss_conf 899999999873--2586032345799999456279-960-687267433685278 No 356 >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Probab=92.23 E-value=0.17 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=30.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 76689879879999999999659908998358883 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +||.|+|+|-=|-+.|..+.+.|++|++++..+.. T Consensus 2 Kki~IlG~GQLgrml~~Aa~~lG~~v~v~d~~~~~ 36 (355) T 3eth_A 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (355) T ss_dssp CEEEEESCSHHHHHHHHHHGGGTCEEEEECTTCCG T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 99999889899999999999789989998289996 No 357 >3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A* Probab=92.20 E-value=0.069 Score=28.57 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=41.6 Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCC--CEEEECEEEEECCCCHHHHH Q ss_conf 99999999999669889981343320405875899998678--48970568993188767999 Q T0604 221 TMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG--EEIKSRHVVLAVGHSARDTF 281 (549) Q Consensus 221 ~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g--~~i~ad~VVlAtGhsard~~ 281 (549) ...+.+.+.+++.|++++++++|+.+. ++++. +...+| +++++|.+|+|+|..+.+.. T Consensus 201 ~~~~~~~~~l~~~gI~~~~~~~V~~v~--~~~~~-~~~~~g~~~~i~~d~vi~~~g~~~~~~~ 260 (430) T 3h28_A 201 ASKRLVEDLFAERNIDWIANVAVKAIE--PDKVI-YEDLNGNTHEVPAKFTMFMPSFQGPEVV 260 (430) T ss_dssp THHHHHHHHHHHTTCEEECSCEEEEEC--SSEEE-EECTTSCEEEEECSEEEEECEEECCHHH T ss_pred HHHHHHHHHHHHCCEEEEECCEEEEEE--CCCEE-EEECCCCCEECCCCEEEEECCCCCCHHH T ss_conf 999999999997691999685689992--89508-9953886022035427990474778799 No 358 >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Probab=92.14 E-value=0.14 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=11.7 Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCCEEEEE Q ss_conf 76689879-879999999999659908998 Q T0604 108 ERPIVIGF-GPCGLFAGLVLAQMGFNPIIV 136 (549) Q Consensus 108 ~rVVVVGa-GpAGL~AAl~La~~G~~V~Vl 136 (549) .+|+|.|| |+-|++|+..+...|++|+.+ T Consensus 142 ~~vlV~Ga~g~vG~~a~qla~~~G~~Vi~~ 171 (327) T 1qor_A 142 EQFLFHAAAGGVGLIACQWAKALGAKLIGT 171 (327) T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 999998995399999999999859989997 No 359 >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A Probab=92.14 E-value=0.22 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.8 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6776689879-87999999999965990899835888 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |+|.++|.|| +--|..+|..|++.|++|++..|..+ T Consensus 1 M~K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~ 37 (239) T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPE 37 (239) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9988999779758999999999987999999979999 No 360 >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Probab=92.01 E-value=0.23 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=30.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 67766898798799999999996599--089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ..+||.|||+|--|-..|+.|+..++ +..|++... T Consensus 6 ~~~KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~ 42 (318) T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318) T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC- T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 9992899897989999999998379998599990899 No 361 >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Probab=91.99 E-value=0.18 Score=26.00 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=31.7 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879-879999999999659908998358883 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ++||+|.|| |.-|-..+..|.++|++|+++-|.... T Consensus 2 ~~KILVtGatG~iG~~lv~~L~~~g~~V~~l~R~~~~ 38 (307) T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTIT 38 (307) T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9879998998589999999999788938999778643 No 362 >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 2px9_A Probab=91.97 E-value=0.19 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=28.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECC Q ss_conf 7766898798799999999996599-08998358 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERG 139 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlErg 139 (549) ..||.|||+|.-|...+..|+..|+ +++|++.. T Consensus 17 ~skVlvVGaGgiGce~lk~La~~Gvg~i~iiD~D 50 (640) T 1y8q_B 17 GGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLD 50 (640) T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECC T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 7968998988899999999998389889998499 No 363 >2yr5_A Pro-enzyme of L-phenylalanine oxidase; amino oxidase, flavoenzyme, oxidoreductase; HET: FAD; 1.25A {Pseudomonas SP} PDB: 2yr4_A* 2yr6_A* Probab=91.96 E-value=0.084 Score=28.04 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=30.3 Q ss_pred CCCCEEECCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 8985420123533578-99999999999999999999752179 Q T0604 508 LKGFYPAGEGAGYAGG-ILSAGIDGIKVAEAVARDIVAAMENA 549 (549) Q Consensus 508 i~GLY~~GEgaGyagG-I~saa~~G~~~a~~i~~~~~~~~~~~ 549 (549) -..||||||.+=+.+| |-.|-..|+|||.+|+..+.....+| T Consensus 644 ~~rl~fAGE~~S~~~gwieGAl~Sa~rAa~~Ii~~~~~~~~~~ 686 (721) T 2yr5_A 644 DNRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVRANRGDVSA 686 (721) T ss_dssp CCCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHTTTCGGG T ss_pred CCCEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 8858999765478873699999999999999999843998055 No 364 >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding domain, 37 amino acid insertional region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Probab=91.92 E-value=0.18 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=14.3 Q ss_pred CCCCCEEECCHHHHCHHHHHHHHHH-HHHHCCCC Q ss_conf 0057604526254031899999999-98861222 Q T0604 441 SFTPGIKLTDLSKALPPFAVEAIRE-AIPAFDRK 473 (549) Q Consensus 441 s~~~~~~~~~L~~~lP~~v~~~l~~-~l~~f~~~ 473 (549) .+.|++++ +|+.+-+.+.. .|..|+-+ T Consensus 440 ~~~~gV~~------lP~~iD~~VA~~~L~~lg~~ 467 (494) T 3ce6_A 440 EYDNEVYR------LPKHLDEKVARIHVEALGGH 467 (494) T ss_dssp GCCSSEEC------CCHHHHHHHHHHHHHHHTCC T ss_pred CCCCCEEE------CCHHHHHHHHHHHHHHCCCE T ss_conf 47897367------98899999999999865977 No 365 >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* Probab=91.90 E-value=0.16 Score=26.24 Aligned_cols=38 Identities=5% Similarity=0.072 Sum_probs=30.4 Q ss_pred CCCEEEECC-C--HHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 776689879-8--7999999999965990899835888321 Q T0604 107 TERPIVIGF-G--PCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 107 ~~rVVVVGa-G--pAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .|+++|.|| | --|...|..|++.|++|++..|++.... T Consensus 6 gK~~lITGaag~~GIG~aiA~~la~~Ga~V~i~~r~~~~~~ 46 (275) T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK 46 (275) T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH T ss_conf 98899989999738999999999987999999968889999 No 366 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=91.73 E-value=0.33 Score=24.27 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=30.8 Q ss_pred CCCCCCCCCCCEEEECC--CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77788776776689879--87999999999965990899835888 Q T0604 99 VAKAPENLTERPIVIGF--GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 99 ~~~~~~~~~~rVVVVGa--GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +..-+..+..||+||=+ +--|...|..|++.|++|++..|... T Consensus 19 ~~~M~~~L~gKvalITGas~GIG~aia~~la~~Ga~Vv~~~r~~~ 63 (270) T 3ftp_A 19 PGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEA 63 (270) T ss_dssp ----CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 898899879998999287868999999999986999999979889 No 367 >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Probab=91.73 E-value=0.15 Score=26.54 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=47.0 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCEEEEEEECCCCEEEECEEEEECCCCHHHHH Q ss_conf 799999999999966988998134332040587589999867848970568993188767999 Q T0604 219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTF 281 (549) Q Consensus 219 ~~~vv~~L~~~l~~~G~~i~~~t~V~~i~~~~g~v~gV~t~~g~~i~ad~VVlAtGhsard~~ 281 (549) ...+.+.+.+.+++.|++++.+++|+.+.. ++ |.+.+|+++++|.+|.|+|..+.+.+ T Consensus 217 ~~~~~~~~~~~l~~~gV~~~~~~~v~~v~~--~~---v~~~~g~~i~~D~vi~~~g~~~~~~l 274 (409) T 3h8l_A 217 SPNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE---IVDEKGNTIPADITILLPPYTGNPAL 274 (409) T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEECS--SE---EEETTSCEEECSEEEEECCEECCHHH T ss_pred CHHHHHHHHHHHHHHCCEEEEEEEEEEEEC--CC---CCCCCCCEEEECCCEEEEEEECCCHH T ss_conf 589999999998740324886557775303--43---21246743652021287665328246 No 368 >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Probab=91.72 E-value=0.22 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=31.4 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879-879999999999659908998358883 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +.||+|+|| |--|-..+-.|.+.|++|.++-|.... T Consensus 4 k~KIlVtGatG~iG~~lv~~L~~~g~~V~~~~R~~~~ 40 (313) T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV 40 (313) T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9989998999789999999999688979999899743 No 369 >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative; 2.19A {Bacteroides fragilis nctc 9343} Probab=91.71 E-value=0.17 Score=26.08 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=29.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEE-EEECCC Q ss_conf 7766898798799999999996599089-983588 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPI-IVERGK 140 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~-VlErg~ 140 (549) ..+|.|||+|.-|-.-|..|.++|++|+ |+.|.+ T Consensus 10 ~~kI~iIG~G~mG~~la~~l~~~G~~v~~v~~r~~ 44 (266) T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE 44 (266) T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 99899983119999999999988997799978999 No 370 >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Probab=91.70 E-value=0.29 Score=24.68 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=4.7 Q ss_pred CEEEECCCHH Q ss_conf 6689879879 Q T0604 109 RPIVIGFGPC 118 (549) Q Consensus 109 rVVVVGaGpA 118 (549) .|+=+|.+.. T Consensus 72 ~V~~~G~~v~ 81 (376) T 1e3i_A 72 IVESVGPGVT 81 (376) T ss_dssp EEEEECTTCC T ss_pred EEEEECCCCC T ss_conf 9999889986 No 371 >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Probab=91.64 E-value=0.3 Score=24.54 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=31.4 Q ss_pred CCCCEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668987-987999999999965990899835888 Q T0604 106 LTERPIVIG-FGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVG-aGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |++||+|.| .|--|-..+..|.+.|++|+++++-.. T Consensus 1 M~kkILVTGatGfIGs~lv~~Ll~~G~~V~~~d~~~~ 37 (348) T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHN 37 (348) T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSS T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9985899899978999999999978697999966773 No 372 >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductase; oxidoreductase; 1.99A {Streptomyces coelicolor A3} Probab=91.63 E-value=0.34 Score=24.25 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=31.7 Q ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 76776689879-87999999999965990899835888321 Q T0604 105 NLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 105 ~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) .|+|.++|.|| +--|...|..|++.|++|++..|..+... T Consensus 19 ~M~K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~ 59 (253) T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE 59 (253) T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 99898999688869999999999987998999989832226 No 373 >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Probab=91.63 E-value=0.25 Score=25.09 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=30.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 67766898798799999999996599--089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) .+.||.|||+|.-|..+|+.|+..|+ +..|++... T Consensus 6 ~~~KV~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 42 (319) T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319) T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 9975999996989999999998179998799992899 No 374 >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Probab=91.56 E-value=0.24 Score=25.14 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=29.5 Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 6689879-8799999999996599089983588 Q T0604 109 RPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 109 rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ||+|+|| |.-|-..+-.|.++|++|+++-|.+ T Consensus 2 KIlVtGatG~iG~~l~~~Ll~~G~~V~~~~R~~ 34 (224) T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 699999885799999999997869899998885 No 375 >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A* Probab=91.56 E-value=0.2 Score=25.62 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=7.9 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) .+|.+|-|||. T Consensus 266 ~aDifvTaTGn 276 (436) T 3h9u_A 266 EAHIFVTTTGN 276 (436) T ss_dssp TCSEEEECSSC T ss_pred HCCEEEEECCC T ss_conf 58999994799 No 376 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=91.51 E-value=0.34 Score=24.19 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=28.6 Q ss_pred CCCCCEEEEC--CCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7677668987--987999999999965990899835888 Q T0604 105 NLTERPIVIG--FGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVG--aGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +|+.||+||= ++--|+..|..|++.|++|++..|..+ T Consensus 3 sLk~KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 41 (257) T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKE 41 (257) T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 748298999389868999999999987998999979899 No 377 >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Porphyromonas gingivalis atcc 33277} Probab=91.49 E-value=0.26 Score=24.95 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=29.1 Q ss_pred CCCEEEEC-CCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 77668987-98799999999996599--089983588 Q T0604 107 TERPIVIG-FGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVG-aGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) .+||.||| +|.-|-.+|+.|+..++ +.+|++... T Consensus 8 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~D~~~ 44 (343) T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA 44 (343) T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH T ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 9848999689669999999998479988699978877 No 378 >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Probab=91.47 E-value=0.34 Score=24.23 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=29.3 Q ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 767766898--7987999999999965990899835888 Q T0604 105 NLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .++.|++|| |++--|..+|..|++.|++|++..|..+ T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~ 41 (253) T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA 41 (253) T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 889988999498868999999999987998999989989 No 379 >2ldx_A APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.96A {Mus musculus} SCOP: c.2.1.5 d.162.1.1 Probab=91.44 E-value=0.33 Score=24.33 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=29.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 7766898798799999999996599--089983588 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ..||.|||+|.-|..+|+.|+..|+ +..|++... T Consensus 19 ~~KI~IiGaG~VG~~~a~~l~~~~~~~el~L~D~~~ 54 (331) T 2ldx_A 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (331) T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 882999897989999999998569988799983898 No 380 >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Probab=91.44 E-value=0.094 Score=27.73 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=28.9 Q ss_pred CCCCCCCCCCEEECCCCCHHH-----H-HHH-HHHHHHHHHHHHHHHHHH Q ss_conf 743026898542012353357-----8-999-999999999999999997 Q T0604 502 DFQSVNLKGFYPAGEGAGYAG-----G-ILS-AGIDGIKVAEAVARDIVA 544 (549) Q Consensus 502 tleS~~i~GLY~~GEgaGyag-----G-I~s-aa~~G~~~a~~i~~~~~~ 544 (549) +.+-..++|||.||..++... | +.. +...|.+||+.|++.|.+ T Consensus 277 ~~~~t~~pgl~~aGda~~~v~g~~rmGptfgam~~sG~~AAe~i~~~l~~ 326 (326) T 2gjc_A 277 SGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 326 (326) T ss_dssp CEECTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC T ss_pred CCCEECCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 98198889999945364073887777707999999999999999998649 No 381 >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* Probab=91.33 E-value=0.26 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=29.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 67766898798799999999996599--089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) .++||.|||+|.-|-.+|+.|+..+. +..|++... T Consensus 5 ~~~KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~ 41 (317) T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41 (317) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 7983999897989999999997079988799980889 No 382 >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Probab=91.33 E-value=0.28 Score=24.78 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=30.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 67766898798799999999996599--089983588 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ..+||.|||||--|..+|+.|+..+. +..|+|..+ T Consensus 5 ~~~KV~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 41 (316) T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316) T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 9986999997989999999998279988799980789 No 383 >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Probab=91.32 E-value=0.39 Score=23.84 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=31.8 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6776689879-87999999999965990899835888 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+++|+|+|| |.-|-..+-.|.++|++|+++-|... T Consensus 4 ~~k~IlVtGaTG~iG~~lv~~Ll~~G~~V~~l~R~~~ 40 (352) T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK 40 (352) T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9988999898708999999999968795999977853 No 384 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* Probab=91.32 E-value=0.24 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=14.4 Q ss_pred EEEEECCCCHHHHHHHHHHCCCCC Q ss_conf 689931887679999999669711 Q T0604 268 HVVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 268 ~VVlAtGhsard~~~~l~~~Gi~~ 291 (549) .+|+-.|.-++-.-..++..|... T Consensus 280 v~ViGyG~iG~gvA~~~~~~G~~V 303 (494) T 3d64_A 280 AVVAGYGDVGKGCAQSLRGLGATV 303 (494) T ss_dssp EEEECCSHHHHHHHHHHHTTTCEE T ss_pred EEEECCCHHHHHHHHHHHHCCCEE T ss_conf 999841789999999998688989 No 385 >2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} Probab=91.29 E-value=0.25 Score=25.10 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=30.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 76689879879999999999659908998358883 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+|.|||+|--|.+.|..+.++|++|++++..+.. T Consensus 2 ~~i~iiG~g~~~r~~~~AA~~lG~~v~~~d~~~~~ 36 (365) T 2z04_A 2 LTVGILGGGQLGWMTILEGRKLGFKFHVLEDKENA 36 (365) T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSSSC T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 99999899999999999999769989999779949 No 386 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Probab=91.29 E-value=0.22 Score=25.42 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=29.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCC Q ss_conf 677668987987999999999965990--8998358883 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFN--PIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~--V~VlErg~~v 142 (549) ..++|.|||+|.=|-.-|..|+++|++ |++++|.+.. T Consensus 32 ~m~kI~iIG~G~MG~~ia~~L~~aG~~v~V~~~dr~~~~ 70 (314) T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPES 70 (314) T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHH T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCHHH T ss_conf 778899992389999999999977998389996599999 No 387 >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Probab=91.21 E-value=0.26 Score=24.97 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=31.9 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879-879999999999659908998358883 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..+||+|+|| |.-|-..+-.|.++|++|+++.|.... T Consensus 3 ~M~KILVtGatG~iG~~l~~~Ll~~g~~V~~~~R~~~~ 40 (321) T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTP 40 (321) T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCT T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 98789997998289999999999689938999889865 No 388 >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reductase family; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8} Probab=91.19 E-value=0.21 Score=25.52 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=28.7 Q ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 76776689879-87999999999965990899835888 Q T0604 105 NLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|++.|+|.|| +--|...|..|++.|++|++..|... T Consensus 3 ~mk~~VlVTGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (234) T 2ehd_A 3 GMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEK 40 (234) T ss_dssp -CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 99988999788888999999999987999999989999 No 389 >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenase; HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Probab=91.15 E-value=0.26 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC Q ss_conf 7766898798799999999996599--0899835888 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~ 141 (549) .++|.|||+|--|-.+|+.|+..+. +++|++.... T Consensus 1 ~rKI~IiGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 37 (309) T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA 37 (309) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9879998979899999999983699883999758997 No 390 >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein; 1.55A {Shewanella oneidensis mr-1} Probab=90.98 E-value=0.26 Score=24.97 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=15.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEE Q ss_conf 677668987987999999999965990899 Q T0604 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPII 135 (549) Q Consensus 106 ~~~rVVVVGaGpAGL~AAl~La~~G~~V~V 135 (549) ...+|+|.|+|+.|++|+..+...|+.+++ T Consensus 142 ~g~~VlI~Gag~vG~~a~~lak~~G~~v~~ 171 (315) T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDL 171 (315) T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEE T ss_pred CCCEEEEECCCCCCCHHHHHHHHCCCEEEE T ss_conf 652488845624241769999987990999 No 391 >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Probab=90.92 E-value=0.23 Score=25.25 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=31.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6689879879999999999659908998358883 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +|-|||-|.-|.-.|..|+++|++|++++|.+.. T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~dr~~~~ 35 (296) T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDA 35 (296) T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHH T ss_pred CEEEEEHHHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 1999827898899999999689969999499999 No 392 >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Probab=90.76 E-value=0.47 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=27.6 Q ss_pred CCCCCCEEEECCC--HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7767766898798--7999999999965990899835888 Q T0604 104 ENLTERPIVIGFG--PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVVGaG--pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+++.||+||=+| --|...|..|++.|++|++..|... T Consensus 12 ~rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 51 (278) T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD 51 (278) T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 7779988999388878999999999987998999979889 No 393 >1vi2_A Shikimate 5-dehydrogenase 2; structural genomics, oxidoreductase; HET: MSE NAD; 2.10A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 PDB: 1npd_A* 1o9b_A* Probab=90.72 E-value=0.56 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=15.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCE-EEEEEC Q ss_conf 7668987987999999999965990-899835 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFN-PIIVER 138 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~-V~VlEr 138 (549) ++|+|+|+|-|+-.+++.|+..|.+ +.|+.| T Consensus 127 k~vlilGaGGaa~Ai~~al~~~g~~~i~i~nR 158 (300) T 1vi2_A 127 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR 158 (300) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEEC T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCCCC T ss_conf 86688535552047889987517653311368 No 394 >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, gluconate utilization, pentose shunt; HET: GLO; 1.50A {Escherichia coli k-12} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Probab=90.69 E-value=0.27 Score=24.82 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=63.1 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 76776689879879999999999659908998358883211010001243542360234554135565212404553220 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~~~~~~~~~n~~~g~ggag~fsdgkl~t~~~ 184 (549) -.++||-+||-|.=|.--|..|+++|++|.+++|.+..-.....-. ...+.....+...+-..... .| .+.+... T Consensus 13 ~~K~kIG~IGLG~MG~~mA~nL~~~G~~V~vydr~~~k~~~l~~~g--~~~~~~~~~s~~e~v~~~~~--~~-vIi~~vp 87 (480) T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--PGKKLVPYYTVKEFVESLET--PR-RILLMVK 87 (480) T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS--TTSCEEECSSHHHHHHTBCS--SC-EEEECSC T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC--CCCCCCHHCCHHHHHHHCCC--CC-EEEEECC T ss_conf 5788699974079899999999967990699929999999999818--98777522349999974799--99-8999799 Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 0021178999999966895100136764100012799999999999966988998134332 Q T0604 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDD 245 (549) Q Consensus 185 ~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~ 245 (549) +. ..++.+++.+.....+..+..+ .+...+.....+.+.+.+.|+.+. +..|.. T Consensus 88 ~~-~~v~~v~~~l~~~l~~g~iiID-----~sT~~~~~s~~~a~~l~~~gi~~l-dapVSG 141 (480) T 2zyd_A 88 AG-AGTDAAIDSLKPYLDKGDIIID-----GGNTFFQDTIRRNRELSAEGFNFI-GTGVSG 141 (480) T ss_dssp SS-SHHHHHHHHHGGGCCTTCEEEE-----CSCCCHHHHHHHHHHHHHTTCEEE-EEEEES T ss_pred CC-HHHHHHHHHHHHCCCCCCEEEE-----CCCCCHHHHHHHHHHHHHCCCCEE-CCCCCC T ss_conf 97-6899999999840889988984-----797626999999999996699344-440466 No 395 >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* Probab=90.59 E-value=0.31 Score=24.51 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEEC Q ss_conf 7766898798799999999996599-0899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlEr 138 (549) ..+|+|||.|.-|...|..|++.|+ +++|++. T Consensus 36 ~s~VliiG~gglG~eiak~L~l~Gv~~i~i~D~ 68 (346) T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDH 68 (346) T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 597999877889999999999957987999949 No 396 >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating 1; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Probab=90.58 E-value=0.43 Score=23.59 Aligned_cols=131 Identities=14% Similarity=0.017 Sum_probs=65.7 Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHCCCCCCCCCHHHH Q ss_conf 8776776689879879999999999659908998358883211010001243--54236023455413556521240455 Q T0604 103 PENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWR--KRTLNPESNVQFGEGGAGTFSDGKLY 180 (549) Q Consensus 103 ~~~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~r~~~~~~~~~--~~~~~~~~n~~~g~ggag~fsdgkl~ 180 (549) .+.|...|-+||-|.-|.--|..|+++|++|.+++|.++.-.....-..... .+....+.....- .. ++ .+. T Consensus 6 ~~~Ms~~IGfIGLG~MG~~mA~nL~~~G~~V~vydrt~~k~~~l~~~~a~~~~~~~a~s~~d~v~~l---~~--~d-~Ii 79 (497) T 2p4q_A 6 HHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKL---KR--PR-KVM 79 (497) T ss_dssp ---CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTS---CS--SC-EEE T ss_pred CHHHCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH---CC--CC-EEE T ss_conf 0001178789817487899999999789948999299999999997015445664657689999983---68--99-899 Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCC Q ss_conf 322000211789999999668951001367641000127999999999999669889981343320 Q T0604 181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDL 246 (549) Q Consensus 181 t~~~~~~~~~~~vl~~~~~~Ga~~~i~~~~kph~gtd~~~~vv~~L~~~l~~~G~~i~~~t~V~~i 246 (549) +.+.+ ....+.|++.+.....+..+..+ .+...+.....+.+.+.+.|+.+ .+..|.+- T Consensus 80 l~vp~-g~~v~~Vi~~l~~~l~~G~IiID-----~sTs~~~~s~~~~~~l~~kgi~f-lDapVSGG 138 (497) T 2p4q_A 80 LLVKA-GAPVDALINQIVPLLEKGDIIID-----GGNSHFPDSNRRYEELKKKGILF-VGSGVSGG 138 (497) T ss_dssp ECCCS-SHHHHHHHHHHGGGCCTTCEEEE-----CSCCCHHHHHHHHHHHHHTTCEE-EEEEEESH T ss_pred EECCC-CHHHHHHHHHHHHHCCCCCEEEE-----CCCCCHHHHHHHHHHHHHCCCEE-ECCCCCCC T ss_conf 97689-48999999999963889998997-----99997479999999998559858-54546788 No 397 >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Probab=90.50 E-value=0.37 Score=23.99 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=11.4 Q ss_pred CEEEEECCCCHHHHHHHHHHCCC Q ss_conf 56899318876799999996697 Q T0604 267 RHVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 267 d~VVlAtGhsard~~~~l~~~Gi 289 (549) ..+|+..|+.||....-|.+.|. T Consensus 143 ~vlIlGaGGaarai~~aL~~~g~ 165 (297) T 2egg_A 143 RILVIGAGGGARGIYFSLLSTAA 165 (297) T ss_dssp EEEEECCSHHHHHHHHHHHTTTC T ss_pred EEEEECCCHHHHHHHHHHHHCCC T ss_conf 69997663668999999997398 No 398 >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) precursor; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* Probab=90.50 E-value=0.3 Score=24.54 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.2 Q ss_pred CCCEEEECCC---HHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7766898798---799999999996599089983588 Q T0604 107 TERPIVIGFG---PCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGaG---pAGL~AAl~La~~G~~V~VlErg~ 140 (549) .|.++|.||+ --|...|..|++.|++|++..|.. T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (297) T 1d7o_A 8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP 44 (297) T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 9979998999996499999999998799899983762 No 399 >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant defense, biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Probab=90.41 E-value=0.49 Score=23.22 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=5.3 Q ss_pred CCCEEEECCCH Q ss_conf 77668987987 Q T0604 107 TERPIVIGFGP 117 (549) Q Consensus 107 ~~rVVVVGaGp 117 (549) .-.|+=||.+. T Consensus 79 ~G~Vv~vG~~v 89 (366) T 1yqd_A 79 VGEVTEVGSKV 89 (366) T ss_dssp EEEEEEECTTC T ss_pred EEEEEEECCCC T ss_conf 99999989987 No 400 >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Probab=90.31 E-value=0.31 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=32.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .-+|-|||-|.-|.-.|..|++.|++|.++++.+.. T Consensus 7 ~mkIg~IGlG~MG~~mA~~L~~~G~~v~v~d~~~~~ 42 (303) T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQA 42 (303) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 785999953798999999999789938998199999 No 401 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Probab=90.23 E-value=0.21 Score=25.54 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=31.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 76689879879999999999659908998358883 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) -||-|||-|.-|.-.|..|++.|++|.+++|.+.. T Consensus 5 mkIgviGlG~MG~~~a~~L~~~G~~v~v~dr~~~~ 39 (301) T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEAN 39 (301) T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHH T ss_pred CEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 98999702687999999999788948997899999 No 402 >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, protein structure initiative; 2.85A {Plasmodium falciparum 3D7} Probab=90.18 E-value=0.3 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=30.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CEEEEEECCCCC Q ss_conf 76689879879999999999659-------908998358883 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMG-------FNPIIVERGKEV 142 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G-------~~V~VlErg~~v 142 (549) .||.|||+|.-|...|..|++.| .+|.++-|.+.+ T Consensus 22 mKI~IIGaGawGtALA~~La~ng~~~~~~~~~V~lw~r~~~v 63 (375) T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFV 63 (375) T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC- T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC T ss_conf 889998979999999999997087655568757999706540 No 403 >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Probab=90.07 E-value=0.23 Score=25.24 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=30.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-------CEEEEEECCCCCC Q ss_conf 776689879879999999999659-------9089983588832 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMG-------FNPIIVERGKEVR 143 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G-------~~V~VlErg~~vg 143 (549) .+||.|+|||.-|...|..|++.| .+|.++-|.+++. T Consensus 8 ~kKI~ViGaGawGtALA~~La~N~~~~~~~~~~V~lw~r~~~~~ 51 (354) T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIG 51 (354) T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSS T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCHHCCCCEEEEEEECHHHH T ss_conf 78389989499999999999853640101687468996154432 No 404 >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Probab=90.02 E-value=0.7 Score=22.27 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879879999999999659908998358883 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..+|-+||-|.-|.--|..|+++|++|.+++|.+.. T Consensus 21 mmkIG~IGlG~MG~~mA~~L~~~G~~v~v~d~~~~~ 56 (310) T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSK 56 (310) T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGG T ss_pred CCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 687988707889999999999789938997599999 No 405 >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Probab=89.96 E-value=0.53 Score=23.01 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=26.0 Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 689879-87999999999965990899835888 Q T0604 110 PIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 110 VVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |+|.|| +--|...|..|++.|++|++..|... T Consensus 4 vlITGas~GIG~aiA~~la~~Ga~Vv~~~r~~~ 36 (255) T 2dkn_A 4 IAITGSASGIGAALKELLARAGHTVIGIDRGQA 36 (255) T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 999388479999999999987998999979889 No 406 >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Probab=89.95 E-value=0.45 Score=23.46 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC Q ss_conf 66898798799999999996599--0899835888 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKE 141 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~ 141 (549) ||.|||+|--|..+|+.|+..|+ +.+|++.... T Consensus 2 KV~IiGaG~vG~~~a~~l~~~~l~~el~L~D~~~~ 36 (310) T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (310) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCC T ss_conf 79999969899999999985799985599568987 No 407 >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} Probab=89.94 E-value=0.35 Score=24.14 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=8.3 Q ss_pred EECEEEEECCC Q ss_conf 70568993188 Q T0604 265 KSRHVVLAVGH 275 (549) Q Consensus 265 ~ad~VVlAtGh 275 (549) .+|.+|-|||. T Consensus 275 ~aDifiTaTGn 285 (435) T 3gvp_A 275 QVDIVITCTGN 285 (435) T ss_dssp TCSEEEECSSC T ss_pred HCCEEEEECCC T ss_conf 37899994488 No 408 >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=89.93 E-value=0.38 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=29.7 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 776689879-87999999999965990899835888 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .++|+|.|| +--|...|..|++.|++|+++.|... T Consensus 3 ~~kvlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~ 38 (236) T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 38 (236) T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 598999858769999999999987999999979820 No 409 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=89.92 E-value=0.47 Score=23.37 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.1 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 6776689879-8799999999996599089983588 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) |+|.++|.|| |--|...|..|++.|++|+++.|.. T Consensus 1 m~K~alITGas~GIG~aia~~l~~~G~~Vil~~r~~ 36 (256) T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND 36 (256) T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 998999947850999999999998799899998989 No 410 >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Probab=89.91 E-value=0.66 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=27.9 Q ss_pred CCCCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7767766898-79-87999999999965990899835888 Q T0604 104 ENLTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .++.-||++| || +--|...|..|++.|++|++..|..+ T Consensus 27 ~~L~GKvalITGas~GIG~aiA~~la~~Ga~Vvl~~r~~~ 66 (272) T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH 66 (272) T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9999988999287669999999999987998999989999 No 411 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=89.90 E-value=0.52 Score=23.06 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=26.5 Q ss_pred CCCCEE-EECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668-9879-87999999999965990899835888 Q T0604 106 LTERPI-VIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVV-VVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ++-||+ |.|| +--|...|..|++.|++|++..|..+ T Consensus 27 L~gKvalITGas~GIG~aiA~~la~~Ga~V~i~~r~~~ 64 (276) T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAE 64 (276) T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 99998999288888999999999986999999979889 No 412 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=89.84 E-value=0.52 Score=23.09 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=28.2 Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7766898798-7999999999965990899835888 Q T0604 107 TERPIVIGFG-PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaG-pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ++.|+|.||+ --|...|..|++.|++|++..|... T Consensus 7 ~k~vlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~ 42 (252) T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE 42 (252) T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 999999758369999999999987999999989999 No 413 >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} SCOP: c.2.1.4 c.23.12.3 Probab=89.79 E-value=0.32 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=12.0 Q ss_pred CCCCEEECCHHHHCHHHHHHHHHH-HHHHC Q ss_conf 057604526254031899999999-98861 Q T0604 442 FTPGIKLTDLSKALPPFAVEAIRE-AIPAF 470 (549) Q Consensus 442 ~~~~~~~~~L~~~lP~~v~~~l~~-~l~~f 470 (549) |.+++++ +|+++-+.+.+ .|..| T Consensus 426 l~~~V~~------lP~~iDe~VA~l~L~~~ 449 (479) T 1v8b_A 426 YENKVYL------LPKHLDEKVALYHLKKL 449 (479) T ss_dssp CCSSEEC------CCHHHHHHHHHHHHGGG T ss_pred CCCCEEE------CCHHHHHHHHHHHHHHC T ss_conf 5897478------98899999999989765 No 414 >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Probab=89.67 E-value=0.59 Score=22.72 Aligned_cols=37 Identities=24% Similarity=0.160 Sum_probs=31.9 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6776689879-879999999999659908998358883 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ..+||+|.|| |.-|-..+..|.++|++|.++.|.... T Consensus 8 ~~KkILVTGgtGfIGs~lv~~Ll~~g~~V~~~~r~~~~ 45 (357) T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT 45 (357) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 95989996899789999999999779989999789986 No 415 >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Probab=89.58 E-value=0.35 Score=24.17 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=28.6 Q ss_pred CCCCEEEEC-CCHHHHHHHHHHHHCCCE--EEEEECCC Q ss_conf 677668987-987999999999965990--89983588 Q T0604 106 LTERPIVIG-FGPCGLFAGLVLAQMGFN--PIIVERGK 140 (549) Q Consensus 106 ~~~rVVVVG-aGpAGL~AAl~La~~G~~--V~VlErg~ 140 (549) +.-||.||| +|.-|-.+|+.|+..++- ..|+|..+ T Consensus 7 ~~mKV~IiGaaG~VG~~~A~~l~~~~l~~el~LiDi~~ 44 (326) T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN 44 (326) T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 99869999799769999999997189978799962899 No 416 >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase; 1.30A {Burkholderia SP} Probab=89.54 E-value=0.24 Score=25.17 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=10.0 Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEE Q ss_conf 6689879-879999999999659908998 Q T0604 109 RPIVIGF-GPCGLFAGLVLAQMGFNPIIV 136 (549) Q Consensus 109 rVVVVGa-GpAGL~AAl~La~~G~~V~Vl 136 (549) +|+|.|| |+-|++++..+...|.+|+++ T Consensus 148 ~VlV~ga~G~vG~~a~qla~~~G~~vi~~ 176 (333) T 1wly_A 148 YVLIHAAAGGMGHIMVPWARHLGATVIGT 176 (333) T ss_dssp EEEETTTTSTTHHHHHHHHHHTTCEEEEE T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 99998996699999999998759989997 No 417 >2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A Probab=89.53 E-value=0.27 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=31.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 76689879879999999999659908998358883 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ++|-+||-|.=|.-.|..|+++|++|.+++|.+.- T Consensus 4 ~kIg~IGlG~MG~~ma~~L~~~G~~v~v~dr~~~~ 38 (302) T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSA 38 (302) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHH T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 88999826588999999999789968998199899 No 418 >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A Probab=89.41 E-value=0.38 Score=23.92 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=28.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCE-EEEEEC Q ss_conf 77668987987999999999965990-899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFN-PIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~-V~VlEr 138 (549) ..+|+|||+|..|..+|-.|+..|+. ++|++. T Consensus 32 ~s~VlivG~gglG~eiaknL~l~GVg~itivD~ 64 (531) T 1tt5_A 32 SAHVCLINATATGTEILKNLVLPGIGSFTIIDG 64 (531) T ss_dssp HCEEEEECCSHHHHHHHHHHHTTTCSEEEEECC T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 698899888899999999999835988999879 No 419 >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Probab=89.29 E-value=0.54 Score=22.96 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=27.9 Q ss_pred CCCEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 77668987-9879999999999659908998358883 Q T0604 107 TERPIVIG-FGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVG-aGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .|.|+|.| ++-=|...|..|++.|++|++..|...- T Consensus 14 ~K~~lITGas~GIG~aiA~~la~~Ga~Vi~~~r~~~~ 50 (265) T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD 50 (265) T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 9989993888199999999999879989999897788 No 420 >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Probab=89.29 E-value=0.52 Score=23.07 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=30.9 Q ss_pred CCCCCCCEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 877677668987-9879999999999659908998358 Q T0604 103 PENLTERPIVIG-FGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 103 ~~~~~~rVVVVG-aGpAGL~AAl~La~~G~~V~VlErg 139 (549) |+...-||+|.| +|.-|-..+..|.++|++|+++++- T Consensus 16 ~~g~~MKILVtGgtGfIGs~lv~~Ll~~g~~V~~vd~~ 53 (330) T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNF 53 (330) T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECC T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 89999869998887789999999999786989999788 No 421 >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* Probab=89.24 E-value=0.38 Score=23.91 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=27.2 Q ss_pred CCCEEEECCCH---HHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 77668987987---99999999996599089983588832 Q T0604 107 TERPIVIGFGP---CGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 107 ~~rVVVVGaGp---AGL~AAl~La~~G~~V~VlErg~~vg 143 (549) .|.++|.||+- -|..+|..|++.|++|++..|.+... T Consensus 9 gK~~lITGass~~GIG~aia~~la~~Ga~V~i~~r~~~~~ 48 (265) T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLK 48 (265) T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTH T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 9979998999850189999999998699999995887899 No 422 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=89.21 E-value=0.38 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.8 Q ss_pred CCCCEEEECCCHH---------HHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6776689879879---------99999999965990899835888 Q T0604 106 LTERPIVIGFGPC---------GLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGaGpA---------GL~AAl~La~~G~~V~VlErg~~ 141 (549) |.+||.|+.||++ |-..+-.|.+.|++|+++|.... T Consensus 1 m~~ki~vl~GG~S~E~~iSl~sg~~i~~aL~~~g~~~~~id~~~~ 45 (306) T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV 45 (306) T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 985099993868742284999999999999886997999889841 No 423 >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Probab=89.20 E-value=0.57 Score=22.81 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=31.8 Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 76689879-8799999999996599089983588832 Q T0604 108 ERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 108 ~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) .||+|.|| |.-|-..+..|.++|++|+.+.|..... T Consensus 2 ~rILVtGgtGfIG~~l~~~L~~~g~~V~~~~r~~~~~ 38 (322) T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPER 38 (322) T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC--- T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 8699989986899999999997849899998789731 No 424 >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Probab=89.15 E-value=0.81 Score=21.88 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=27.7 Q ss_pred CCCCCCCEEEECC--CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 8776776689879--87999999999965990899835888 Q T0604 103 PENLTERPIVIGF--GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 103 ~~~~~~rVVVVGa--GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |..+.-||+||=+ +--|...|..|++.|++|++..|..+ T Consensus 13 ~g~L~GKvalVTGgs~GIG~aiA~~la~~Ga~Vvi~~r~~~ 53 (303) T 1yxm_A 13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE 53 (303) T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 99779898999388878999999999987998999979889 No 425 >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Probab=89.05 E-value=0.44 Score=23.52 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=28.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 66898798799999999996599--089983588 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ||.|||+|.-|..+|+.|+..++ +..|++..+ T Consensus 2 KV~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (319) T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319) T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 7999996989999999998479987699983898 No 426 >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Probab=89.03 E-value=0.51 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=14.3 Q ss_pred EEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 899318876799999996697111 Q T0604 269 VVLAVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 269 VVlAtGhsard~~~~l~~~Gi~~~ 292 (549) +|--.|.-++..-+.|.+.|..+. T Consensus 177 aIQGfGnVG~~~A~~L~~~Gakvv 200 (364) T 1leh_A 177 SVQGLGNVAKALCKKLNTEGAKLV 200 (364) T ss_dssp EEECCSHHHHHHHHHHHHTTCEEE T ss_pred EEEECCHHHHHHHHHHHHCCCEEE T ss_conf 999266478999999998799999 No 427 >2v7p_A L-lactate dehydrogenase; oxidoreductase, phosphorylation, NAD, cytoplasm, glycolysis, thermophIle; HET: NAD; 2.10A {Thermus thermophilus} PDB: 2e37_A* 2v6m_A* Probab=89.00 E-value=0.52 Score=23.09 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 66898798799999999996599--089983588 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ||.|||+|--|-.+|+.|+..++ ++.|++... T Consensus 2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~ 35 (310) T 2v7p_A 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDR 35 (310) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 7999996989999999998569988799991799 No 428 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=88.93 E-value=0.55 Score=22.93 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=26.7 Q ss_pred CCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 67766898-79-87999999999965990899835888 Q T0604 106 LTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +..||+|| || +--|+..|..|++.|++|++..|... T Consensus 42 lenKvalITGas~GIG~aiA~~la~~Ga~Vvi~~r~~~ 79 (285) T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK 79 (285) T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 89988999088858999999999986999999979999 No 429 >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Probab=88.92 E-value=0.53 Score=23.04 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 66898798799999999996599--089983588 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) ||.|||+|--|-..|+.|+..+. ++.|++... T Consensus 2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~ 35 (304) T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 7999996989999999998479988699984899 No 430 >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} SCOP: a.100.1.12 c.2.1.6 Probab=88.89 E-value=0.45 Score=23.45 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCC Q ss_conf 766898798799999999996599--089983588832 Q T0604 108 ERPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGKEVR 143 (549) Q Consensus 108 ~rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~~vg 143 (549) ++|.|||.|.=|-+-|..|.+.|+ +|..+++.+... T Consensus 2 k~I~IiGlG~mG~sla~~l~~~g~~~~V~g~D~~~~~~ 39 (281) T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESI 39 (281) T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCHHHH T ss_conf 77999911889999999997159982899998999999 No 431 >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Probab=88.86 E-value=0.75 Score=22.06 Aligned_cols=30 Identities=37% Similarity=0.713 Sum_probs=16.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEE Q ss_conf 776689879879999999999659908998 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIV 136 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~Vl 136 (549) ..+|+|+|+|..|+++...+...|.++++. T Consensus 165 g~~VlI~GaG~vG~~a~q~a~~~g~~~V~~ 194 (343) T 2dq4_A 165 GKSVLITGAGPIGLMAAMVVRASGAGPILV 194 (343) T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCSEEE T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEE T ss_conf 699999956851179999999739937964 No 432 >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Probab=88.81 E-value=0.19 Score=25.81 Aligned_cols=34 Identities=18% Similarity=-0.028 Sum_probs=22.9 Q ss_pred CCCCCCCCCEEECCCCCHHHH--HHHHHHHHHHHHHHH Q ss_conf 430268985420123533578--999999999999999 Q T0604 503 FQSVNLKGFYPAGEGAGYAGG--ILSAGIDGIKVAEAV 538 (549) Q Consensus 503 leS~~i~GLY~~GEgaGyagG--I~saa~~G~~~a~~i 538 (549) |+ ...+.+|.+|.... ++. +..|--+|.++|..| T Consensus 636 L~-~~~~~v~~iGD~~~-~~~~~a~~Ai~eG~~aA~~I 671 (671) T 1ps9_A 636 LI-DSGKTVHLIGGCDV-AMELDARRAIAQGTRLALEI 671 (671) T ss_dssp HH-TTTCCEEECGGGTC-CSSCCHHHHHHHHHHHHHHC T ss_pred HH-HCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHHC T ss_conf 99-75998999868787-68634999999999999849 No 433 >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, PSI, protein structure initiative; 2.40A {Salmonella typhimurium LT2} Probab=88.81 E-value=0.29 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=31.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6689879879999999999659908998358883 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) ||-|||-|.-|.-.|..|++.|++|++++|.+.. T Consensus 5 kIg~iGlG~MG~~~a~~L~~~G~~v~v~d~~~~~ 38 (295) T 1yb4_A 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVA 38 (295) T ss_dssp EEEECCCSTTHHHHHHHHHHTTCEEEECCSSCCC T ss_pred EEEEEEHHHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 8998716988999999999779928998088989 No 434 >2jjy_A Enoyl-[acyl-carrier-protein] reductase; NAD, FABI, oxidoreductase, enoyl reductase, fatty acid biosynthesis; HET: NAD; 2.90A {Francisella tularensis} Probab=88.77 E-value=0.49 Score=23.25 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=27.1 Q ss_pred CCCEEEECC-C--HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 776689879-8--7999999999965990899835888 Q T0604 107 TERPIVIGF-G--PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGa-G--pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .++++|.|+ | --|..+|..|++.|++|++..+++. T Consensus 6 gk~alITG~aas~GIG~aiA~~la~~G~~Vvi~~~~~~ 43 (268) T 2jjy_A 6 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQF 43 (268) T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECSSC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCH T ss_conf 98899989988848999999999986999999858951 No 435 >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor} Probab=88.76 E-value=0.62 Score=22.58 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=6.5 Q ss_pred CHHHHHHHHHHHHCCCEEEE Q ss_conf 87999999999965990899 Q T0604 116 GPCGLFAGLVLAQMGFNPII 135 (549) Q Consensus 116 GpAGL~AAl~La~~G~~V~V 135 (549) |+.|+++...+...|.+|++ T Consensus 239 G~vGl~aiqlak~~G~~vi~ 258 (456) T 3krt_A 239 GGLGSYATQFALAGGANPIC 258 (456) T ss_dssp SHHHHHHHHHHHHTTCEEEE T ss_pred CCCCHHHHHHHHHCCCEEEE T ss_conf 72147999999975990579 No 436 >2qio_A Enoyl-(acyl-carrier-protein) reductase; enoyl ACP reductase, unknown function; HET: NAD TCL; 2.44A {Bacillus anthracis} Probab=88.72 E-value=0.57 Score=22.80 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=28.5 Q ss_pred CCCEEEECC-C--HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879-8--79999999999659908998358883 Q T0604 107 TERPIVIGF-G--PCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGa-G--pAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .+.++|.|| | --|..+|..|++.|++|++..+.... T Consensus 6 gK~~lITGas~~~GIG~aiA~~l~~~Ga~Vii~~~~~~~ 44 (256) T 2qio_A 6 GKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERL 44 (256) T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSHHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 898999899998669999999999879999998288078 No 437 >2nlo_A Shikimate dehydrogenase; quinate, rossman fold, oxidoreductase; 1.64A {Corynebacterium glutamicum atcc 13032} Probab=88.69 E-value=0.62 Score=22.59 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=15.1 Q ss_pred CEEEEECCCCHHHHHHHHHHCCC Q ss_conf 56899318876799999996697 Q T0604 267 RHVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 267 d~VVlAtGhsard~~~~l~~~Gi 289 (549) ..+|+..|+.||-...-|.+.|. T Consensus 148 ~vlilGaGGaara~~~al~~~g~ 170 (302) T 2nlo_A 148 SVVQVGAGGVGNAVAYALVTHGV 170 (302) T ss_dssp EEEEECCSTTHHHHHHHHHHTTC T ss_pred EEEEECCCHHHHHHHHHHHHCCC T ss_conf 47996565088899999997498 No 438 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=88.68 E-value=0.68 Score=22.33 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=27.0 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6776689879-87999999999965990899835888 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |+|-++|.|| +--|...|..|++.|++|++..|..+ T Consensus 1 MnKvalITGas~GIG~aiA~~la~~G~~V~i~~~~~~ 37 (250) T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAE 37 (250) T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9989999288978999999999987998999989889 No 439 >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix K1} Probab=88.58 E-value=0.56 Score=22.89 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=28.0 Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7766898798-7999999999965990899835888 Q T0604 107 TERPIVIGFG-PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaG-pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|.|+|.||. --|..+|..|++.|++|++..|..+ T Consensus 7 GK~vlITGas~GIG~~ia~~l~~~Ga~Vi~~~r~~~ 42 (260) T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGARLLLFSRNRE 42 (260) T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 998999288878999999999987998999979889 No 440 >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} Probab=88.56 E-value=0.41 Score=23.74 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=28.7 Q ss_pred CCCEEEECC-C--HHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 776689879-8--799999999996599089983588832 Q T0604 107 TERPIVIGF-G--PCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 107 ~~rVVVVGa-G--pAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) .|+++|.|| | --|...|..|++.|++|++..|.+... T Consensus 14 gK~~lITGaa~s~GIG~aiA~~la~~G~~V~i~~~~~~~~ 53 (271) T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK 53 (271) T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 9989998998760899999999998699999995886889 No 441 >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A* Probab=88.55 E-value=0.47 Score=23.32 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=28.4 Q ss_pred CCCEEEECCC---HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 7766898798---79999999999659908998358883 Q T0604 107 TERPIVIGFG---PCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGaG---pAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .|.++|.||+ --|...|..|++.|.+|++..|.+.. T Consensus 30 GK~alITGaas~~GIG~aiA~~la~~Ga~Vvi~~~~~~~ 68 (296) T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF 68 (296) T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 998999899998669999999999869999999688899 No 442 >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Probab=88.53 E-value=0.81 Score=21.84 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=27.0 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879-879999999999659908998358883 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .|.++|.|| +--|..+|..|++.|++|++..|..+. T Consensus 34 GK~~lITGas~GIG~aia~~la~~G~~V~l~~r~~~~ 70 (279) T 3ctm_A 34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPA 70 (279) T ss_dssp TCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 9879993898699999999999879989999588578 No 443 >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Probab=88.51 E-value=0.44 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=28.1 Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 76689879-8799999999996599--089983588 Q T0604 108 ERPIVIGF-GPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 108 ~rVVVVGa-GpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) .||.|||| |.-|-.+|+.|+..++ +++|++..+ T Consensus 1 ~KV~IiGa~G~VG~~~A~~l~~~~l~~el~L~D~~~ 36 (314) T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (314) T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 969999999869999999997189877599995798 No 444 >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Probab=88.39 E-value=0.84 Score=21.77 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=25.7 Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 76689879-87999999999965990899835888 Q T0604 108 ERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 108 ~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |.++|.|+ +--|...|..|++.|++|++..|... T Consensus 6 K~alITG~s~GIG~aia~~la~~Ga~V~~~~r~~~ 40 (245) T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEG 40 (245) T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 99999388878999999999987998999979878 No 445 >1gu7_A 2,4-dienoyl-COA reductase; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Probab=88.26 E-value=0.93 Score=21.49 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.8 Q ss_pred EECCCCEEEE Q ss_conf 6167866887 Q T0604 344 CMCPGGTVVA 353 (549) Q Consensus 344 cmcpgG~vv~ 353 (549) |+.++|.++. T Consensus 264 ~l~~~G~iv~ 273 (364) T 1gu7_A 264 KLNNNGLMLT 273 (364) T ss_dssp TSCTTCEEEE T ss_pred HCCCCCEEEE T ss_conf 3279978999 No 446 >1hwx_A GDH, glutamate dehydrogenase; allostery, abortive complex, oxidoreductase; HET: GLU GTP NAI; 2.50A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 1hwy_A* 1hwz_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr7_A 1nqt_A 1nr1_A Probab=88.23 E-value=0.81 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=10.5 Q ss_pred ECCCCHHHHHHHHHHCCCCCC Q ss_conf 318876799999996697111 Q T0604 272 AVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 272 AtGhsard~~~~l~~~Gi~~~ 292 (549) -.|.-++...+.|.+.|..+. T Consensus 251 GfGnVG~~aA~~L~~~Gakvv 271 (501) T 1hwx_A 251 GFGNVGLHSMRYLHRFGAKCV 271 (501) T ss_dssp CCSHHHHHHHHHHHHTTCEEE T ss_pred CCCHHHHHHHHHHHHCCCEEE T ss_conf 987155899977773574799 No 447 >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE NDP; 1.70A {Ralstonia eutropha JMP134} Probab=88.21 E-value=0.47 Score=23.32 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=13.5 Q ss_pred CCCEEEECCCHHHHHHHHH Q ss_conf 7766898798799999999 Q T0604 107 TERPIVIGFGPCGLFAGLV 125 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~ 125 (549) ....+|.+.++.|...... T Consensus 67 ~~~~~v~~~~~~~~~~~~~ 85 (379) T 3iup_A 67 AERPIVTARVPEGAMRSMA 85 (379) T ss_dssp SSSEEEEEECCHHHHHHHG T ss_pred CCCCEEEEECCCCCEECCC T ss_conf 7776375443764112137 No 448 >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A Probab=88.15 E-value=0.46 Score=23.42 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=10.9 Q ss_pred ECCCCHHHHHHHHHHCCCCCC Q ss_conf 318876799999996697111 Q T0604 272 AVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 272 AtGhsard~~~~l~~~Gi~~~ 292 (549) -.|+-++...+.|.+.|.++. T Consensus 237 GfGnVG~~aa~~L~~~Gakvv 257 (449) T 1bgv_A 237 GFGNVAWGAAKKLAELGAKAV 257 (449) T ss_dssp CSSHHHHHHHHHHHHHTCEEE T ss_pred CCCCHHHHHHHHHHHCCCEEE T ss_conf 778189999999985698789 No 449 >3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Probab=88.11 E-value=0.95 Score=21.43 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=28.8 Q ss_pred CCCCCC-CCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 887767-76689879-87999999999965990899835888 Q T0604 102 APENLT-ERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 102 ~~~~~~-~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +++.++ |.|+|.|| +--|..+|..|+++|++|++..|... T Consensus 41 ~~~~L~GK~alITGas~GIG~aiA~~la~~G~~Vil~~r~~~ 82 (291) T 3ijr_A 41 GSEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE 82 (291) T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 887789998999378979999999999987998999978806 No 450 >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Probab=88.00 E-value=0.72 Score=22.20 Aligned_cols=14 Identities=14% Similarity=-0.168 Sum_probs=7.4 Q ss_pred CCCCEEEECCCHHH Q ss_conf 67766898798799 Q T0604 106 LTERPIVIGFGPCG 119 (549) Q Consensus 106 ~~~rVVVVGaGpAG 119 (549) ..-+|+=||.+..+ T Consensus 67 ~~G~Vv~vGs~v~~ 80 (371) T 1f8f_A 67 GSGIIEAIGPNVTE 80 (371) T ss_dssp EEEEEEEECTTCCS T ss_pred EEEEEEEECCCCCC T ss_conf 99999998999987 No 451 >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Probab=87.94 E-value=0.61 Score=22.62 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=13.1 Q ss_pred HHHHHHHHHHCCCHHHCC Q ss_conf 999999998588878917 Q T0604 27 ALLDAITKKLGIPAEKVI 44 (549) Q Consensus 27 ~l~~~~~~~l~~~~~~i~ 44 (549) ...+.+++.++++++... T Consensus 12 ~~~~~a~~~~~~~~~~~~ 29 (421) T 1v9l_A 12 NYVKKGVELGGFPEDFYK 29 (421) T ss_dssp HHHHHHHHHTTCCHHHHH T ss_pred HHHHHHHHHCCCCHHHHH T ss_conf 999999987398988999 No 452 >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} Probab=87.84 E-value=0.68 Score=22.35 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=27.4 Q ss_pred CCCEEEECCC---HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7766898798---7999999999965990899835888 Q T0604 107 TERPIVIGFG---PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaG---pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|+++|.||+ --|...|..|++.|++|++..|.+. T Consensus 31 GK~alVTGass~~GIG~aiA~~la~~Ga~V~i~~r~~~ 68 (293) T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA 68 (293) T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 99899989999955999999999986999999838779 No 453 >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolidine carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis H37RV} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 2aqh_A* 2aqk_A* ... Probab=87.80 E-value=0.64 Score=22.49 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.0 Q ss_pred CCCEEEECC-CH--HHHHHHHHHHHCCCEEEEEECCC Q ss_conf 776689879-87--99999999996599089983588 Q T0604 107 TERPIVIGF-GP--CGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGa-Gp--AGL~AAl~La~~G~~V~VlErg~ 140 (549) .|+|+|.|| |- -|...|..|++.|++|++..|.. T Consensus 7 gK~vlITGaags~GIG~aia~~la~~Ga~Vvl~~~~~ 43 (269) T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 43 (269) T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 8879997999997799999999998699999996882 No 454 >3i1j_A Oxidoreductase, short chain dehydrogenase/reductase family; dimer, mixed alpha-beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Probab=87.79 E-value=0.99 Score=21.31 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=27.8 Q ss_pred CCCCCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 87767766898-79-87999999999965990899835888 Q T0604 103 PENLTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 103 ~~~~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) |..++-|+++| || +--|...|..|++.|++|++..|... T Consensus 9 p~~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 49 (247) T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEA 49 (247) T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 41359598999684759999999999987998999989889 No 455 >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structural genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Probab=87.73 E-value=0.67 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=27.4 Q ss_pred CCCCCEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCC Q ss_conf 76776689879879--99999999965990899835888 Q T0604 105 NLTERPIVIGFGPC--GLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 105 ~~~~rVVVVGaGpA--GL~AAl~La~~G~~V~VlErg~~ 141 (549) ++.-||++|=+|-. |...|..|++.|++|++..|..+ T Consensus 2 PL~GKvalITGas~GIG~aiA~~la~~Ga~V~i~~r~~~ 40 (260) T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLD 40 (260) T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 999988999686878999999999987998999979889 No 456 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=87.73 E-value=0.97 Score=21.36 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=26.7 Q ss_pred CCCCEE-EECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 677668-9879-87999999999965990899835888 Q T0604 106 LTERPI-VIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVV-VVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ++-|++ |.|| +--|...|..|++.|++|++..|... T Consensus 5 L~gK~alITGas~GIG~aiA~~la~~G~~V~~~~r~~~ 42 (260) T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE 42 (260) T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 59898999388878999999999987998999979889 No 457 >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Probab=87.67 E-value=0.66 Score=22.42 Aligned_cols=32 Identities=31% Similarity=0.312 Sum_probs=27.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-EEEEEEC Q ss_conf 7766898798799999999996599-0899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGF-NPIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~-~V~VlEr 138 (549) ..||+|||+|.-|...+-.|+..|+ +++|++. T Consensus 411 ~~kVLvvG~gglG~Ei~knL~l~Gv~~i~i~D~ 443 (805) T 2nvu_B 411 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 443 (805) T ss_dssp TCCEEEECCSSHHHHHHHHHHTTTCCEEEEEEC T ss_pred CCCEEECCCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 494894387899999999999848985999819 No 458 >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* Probab=87.66 E-value=0.86 Score=21.71 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=30.2 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 776689879-8799999999996599089983588 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .|||+|.|| |.-|-..+..|.++|++|+++.|.. T Consensus 3 ~KkVlITGatG~iG~~l~~~Ll~~g~~V~~~~r~~ 37 (345) T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 29999988998899999999997849899998999 No 459 >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Probab=87.66 E-value=0.7 Score=22.27 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=28.1 Q ss_pred CCCEEEECCCH-HHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 77668987987-999999999965990899835888 Q T0604 107 TERPIVIGFGP-CGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaGp-AGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|.|+|.|+.- -|..+|..|++.|++|++..|..+ T Consensus 7 gk~~lItG~s~giG~aia~~l~~~G~~V~~~~r~~~ 42 (244) T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS 42 (244) T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 998999488978999999999987998999979889 No 460 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=87.64 E-value=1 Score=21.25 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.8 Q ss_pred CCCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 767766898-79-8799999999996599089983588 Q T0604 105 NLTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 105 ~~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .++.||++| || +--|...|..|++.|++|++..|.. T Consensus 29 ~lkgKvalITGas~GIG~aia~~la~~Ga~Vv~~~r~~ 66 (279) T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV 66 (279) T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 74997899928887899999999998799999997988 No 461 >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Probab=87.56 E-value=0.71 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=27.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC Q ss_conf 6898798799999999996599-0899835888 Q T0604 110 PIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKE 141 (549) Q Consensus 110 VVVVGaGpAGL~AAl~La~~G~-~V~VlErg~~ 141 (549) |.|||+|.-|-.+|+.|+..++ +..|++..+. T Consensus 2 I~iiGaG~VG~~~a~~l~~~~~~el~L~D~~~~ 34 (308) T 2d4a_B 2 ITILGAGKVGMATAVMLMMRGYDDLLLIARTPG 34 (308) T ss_dssp EEEECCSHHHHHHHHHHHHHTCSCEEEECSSTT T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 899997989999999998079997999948987 No 462 >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Probab=87.49 E-value=0.52 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=13.3 Q ss_pred EEEECCCCHHHHHHHHHHCCCCC Q ss_conf 89931887679999999669711 Q T0604 269 VVLAVGHSARDTFEMLHERGVYM 291 (549) Q Consensus 269 VVlAtGhsard~~~~l~~~Gi~~ 291 (549) +|--.|+-+....+.|.+.|..+ T Consensus 256 aIQGfGnVG~~aA~~L~e~Gakv 278 (470) T 2bma_A 256 VVSGSGNVALYCVQKLLHLNVKV 278 (470) T ss_dssp EEECSSHHHHHHHHHHHHTTCEE T ss_pred EEECCCCHHHHHHHHHHHCCCEE T ss_conf 99834526899999876407469 No 463 >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: SKM; 1.65A {Thermus thermophilus HB8} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Probab=87.26 E-value=1 Score=21.27 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=11.6 Q ss_pred ECEEEEECCCCHHHHHHHHHHCCC Q ss_conf 056899318876799999996697 Q T0604 266 SRHVVLAVGHSARDTFEMLHERGV 289 (549) Q Consensus 266 ad~VVlAtGhsard~~~~l~~~Gi 289 (549) ...+|+..|+.|+-....+...+. T Consensus 117 ~~~~ilG~GG~a~a~~~~l~~~~~ 140 (263) T 2d5c_A 117 GPALVLGAGGAGRAVAFALREAGL 140 (263) T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC T ss_pred CCEEEEECCHHHHHHHHHHHCCCC T ss_conf 724797024033321000110122 No 464 >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Probab=87.23 E-value=0.72 Score=22.18 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=25.1 Q ss_pred CEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 66898-79-87999999999965990899835888 Q T0604 109 RPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ||+|| || +--|...|..|++.|++|++..+... T Consensus 3 KvalVTGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 37 (258) T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQ 37 (258) T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGG T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 89999078868999999999987998999958988 No 465 >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Probab=87.22 E-value=1 Score=21.29 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=25.0 Q ss_pred EEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 6898-79-8799999999996599089983588 Q T0604 110 PIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 110 VVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ||+| || +--|...|..|+++|++|+++.+.+ T Consensus 3 VvlVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~ 35 (257) T 1fjh_A 3 IIVISGCATGIGAATRKVLEAAGHQIVGIDIRD 35 (257) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 999917877999999999998899899997985 No 466 >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Probab=87.21 E-value=0.71 Score=22.22 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=31.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 668987987999999999965990899835888321 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE 144 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~vg~ 144 (549) ||-+||.|..|...|..|.+.|++|.++.+++.... T Consensus 2 kIg~IGlG~mG~~~a~~L~~~G~~v~~~~~~~~~~~ 37 (264) T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPST 37 (264) T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHH T ss_pred EEEEEEHHHHHHHHHHHHHHCCCEEEEECCCHHHHH T ss_conf 799984689999999999988996899799841537 No 467 >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Probab=87.19 E-value=1.1 Score=21.09 Aligned_cols=36 Identities=17% Similarity=-0.010 Sum_probs=27.5 Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 76689879-8799999999996599089983588832 Q T0604 108 ERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 108 ~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) |.++|.|| +--|..+|..|++.|++|+++.+.+... T Consensus 9 K~~lITGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~ 45 (264) T 2dtx_A 9 KVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGE 45 (264) T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCS T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 9899938887899999999998699999983797445 No 468 >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Probab=87.08 E-value=0.87 Score=21.66 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=27.7 Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7766898798-7999999999965990899835888 Q T0604 107 TERPIVIGFG-PCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGaG-pAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+.|+|.||+ --|...|..|++.|++|++..|... T Consensus 27 g~~VLITGas~GIG~aiA~~la~~G~~V~~~~r~~~ 62 (260) T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH 62 (260) T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 196999778559999999999988998999989879 No 469 >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Probab=87.03 E-value=1 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.2 Q ss_pred CCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7766898-79-8799999999996599089983588 Q T0604 107 TERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) .+||++| || +--|...|..|++.|++|++..+.. T Consensus 24 ~kKValITGas~GIG~aiA~~la~~Ga~V~i~~~~~ 59 (269) T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER 59 (269) T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSC T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 997899918876899999999998799899995893 No 470 >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Probab=87.03 E-value=0.81 Score=21.86 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=8.7 Q ss_pred CEEEEECCCCHHHHHHHHHHCC Q ss_conf 5689931887679999999669 Q T0604 267 RHVVLAVGHSARDTFEMLHERG 288 (549) Q Consensus 267 d~VVlAtGhsard~~~~l~~~G 288 (549) ..+|+..|+.++-....+...+ T Consensus 121 ~vli~G~Gg~a~a~~~~~~~~~ 142 (272) T 1p77_A 121 HVLILGAGGATKGVLLPLLQAQ 142 (272) T ss_dssp EEEEECCSHHHHTTHHHHHHTT T ss_pred EEEEECCHHHHHHHHHHHHHCC T ss_conf 6998234177999999987369 No 471 >1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.2.1.2 PDB: 2yw9_A* Probab=87.01 E-value=0.79 Score=21.92 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=27.4 Q ss_pred CCCEEEECC-C--HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 776689879-8--79999999999659908998358883 Q T0604 107 TERPIVIGF-G--PCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 107 ~~rVVVVGa-G--pAGL~AAl~La~~G~~V~VlErg~~v 142 (549) .|.++|.|| | --|+..|..|++.|++|++..|.... T Consensus 8 gK~~lVTGasg~~GIG~aia~~la~~Ga~Vvi~~r~~~~ 46 (261) T 1ulu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL 46 (261) T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGG T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 997999799998649999999999879999998074777 No 472 >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii RH} PDB: 2o50_A Probab=86.98 E-value=0.72 Score=22.19 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=27.5 Q ss_pred CCCEEEECC-C--HHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 776689879-8--799999999996599089983588 Q T0604 107 TERPIVIGF-G--PCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 107 ~~rVVVVGa-G--pAGL~AAl~La~~G~~V~VlErg~ 140 (549) .|.++|.|| | --|...|..|++.|++|++..+.. T Consensus 9 gK~alVTGAags~GIG~aiA~~la~~Ga~Vvi~~~~~ 45 (315) T 2o2s_A 9 GQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPP 45 (315) T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9989997999997799999999998799999982760 No 473 >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Probab=86.88 E-value=1 Score=21.29 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=27.1 Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 6689879-87999999999965990899835 Q T0604 109 RPIVIGF-GPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 109 rVVVVGa-GpAGL~AAl~La~~G~~V~VlEr 138 (549) .|+|.|| |--|...+..|.+.|++|+++++ T Consensus 7 tVLITGatGfIGs~l~~~Ll~~g~~V~~~d~ 37 (341) T 3enk_A 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADN 37 (341) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECC T ss_pred CEEEECCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 5999748868999999999978497999978 No 474 >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Probab=86.87 E-value=1.1 Score=20.98 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=26.2 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 776689879-87999999999965990899835888 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+.++|.|| +--|..+|..|++.|++|++..|..+ T Consensus 5 gK~aLITGas~GIG~a~A~~la~~G~~V~l~~r~~~ 40 (254) T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE 40 (254) T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 999999589739999999999987998999979879 No 475 >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Probab=86.86 E-value=0.83 Score=21.79 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=16.6 Q ss_pred ECEEEEECCCCHHHHHHHHHHCCCC Q ss_conf 0568993188767999999966971 Q T0604 266 SRHVVLAVGHSARDTFEMLHERGVY 290 (549) Q Consensus 266 ad~VVlAtGhsard~~~~l~~~Gi~ 290 (549) ...+|+..|+.||-....+...|+. T Consensus 120 ~~~lIlG~GGaa~ai~~~l~~~g~~ 144 (271) T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFE 144 (271) T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCC T ss_pred CCEEEECCHHHHHHHHHHHHHCCCC T ss_conf 7189985617888879888664874 No 476 >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Probab=86.75 E-value=1.1 Score=20.94 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.4 Q ss_pred CCCCCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 87767766898-79-8799999999996599089983588 Q T0604 103 PENLTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 103 ~~~~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ..+++-|+++| || +--|+..|..|++.|++|++..+.. T Consensus 24 ~~sLkgK~alITGas~GIG~aia~~la~~Ga~Vii~~~~~ 63 (283) T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS 63 (283) T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 9799999899928887899999999998799899971873 No 477 >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Probab=86.68 E-value=1.1 Score=20.91 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=26.2 Q ss_pred CCCCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7767766898-79-87999999999965990899835888 Q T0604 104 ENLTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+++.|+++| || +--|...|..|++.|++|++..|..+ T Consensus 3 ~~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~ 42 (247) T 2jah_A 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVE 42 (247) T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 6649698999387878999999999987998999989899 No 478 >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta-hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* Probab=86.67 E-value=1.1 Score=20.94 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=24.9 Q ss_pred CCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 76689879-8799999999996599089983588 Q T0604 108 ERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 108 ~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) |.++|.|| +--|...|..|++.|++|++..|.. T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~i~~r~~ 38 (260) T 1x1t_A 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260) T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999938787899999999998799899996985 No 479 >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Probab=86.54 E-value=0.77 Score=22.00 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 6689879879999999999659908998358883 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV 142 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~~v 142 (549) +|-+||-|.-|.--|..|+++|++|.+++|.+.. T Consensus 3 kIG~IGLG~MG~~mA~nL~~~G~~V~v~dr~~~k 36 (478) T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSK 36 (478) T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHH T ss_pred EEEEECHHHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 6999763587999999999679937999499999 No 480 >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Probab=86.52 E-value=0.88 Score=21.65 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=25.8 Q ss_pred CCCCCEEEEC--CCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 7677668987--9879999999999659908998358 Q T0604 105 NLTERPIVIG--FGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 105 ~~~~rVVVVG--aGpAGL~AAl~La~~G~~V~VlErg 139 (549) .|+.||++|= ++--|...|..|++.|++|++..+. T Consensus 10 ~m~~KvalITGas~GIG~aiA~~la~~G~~Vi~~~~~ 46 (256) T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGP 46 (256) T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECT T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 7299889993888789999999999879989998089 No 481 >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Probab=86.52 E-value=0.89 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=13.0 Q ss_pred EEEECCCCHHHHHHHHHHCCCCCC Q ss_conf 899318876799999996697111 Q T0604 269 VVLAVGHSARDTFEMLHERGVYME 292 (549) Q Consensus 269 VVlAtGhsard~~~~l~~~Gi~~~ 292 (549) +|---|+-++..-+.|.+.|..+. T Consensus 179 aIQGfGnVG~~~a~~L~~~Ga~vv 202 (355) T 1c1d_A 179 LVQGLGAVGGSLASLAAEAGAQLL 202 (355) T ss_dssp EEECCSHHHHHHHHHHHHTTCEEE T ss_pred EEEECCHHHHHHHHHHHHCCCEEE T ss_conf 999214477899999997198666 No 482 >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Probab=86.48 E-value=0.77 Score=21.99 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=28.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC Q ss_conf 66898798799999999996599--089983588 Q T0604 109 RPIVIGFGPCGLFAGLVLAQMGF--NPIIVERGK 140 (549) Q Consensus 109 rVVVVGaGpAGL~AAl~La~~G~--~V~VlErg~ 140 (549) +|.|||+|--|-..|+.|+..+. +..|++... T Consensus 2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~ 35 (294) T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294) T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 7999994889999999998379988799990789 No 483 >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Probab=86.44 E-value=1.1 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=26.7 Q ss_pred CCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7766898-79-87999999999965990899835888 Q T0604 107 TERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) +.||++| || +--|...|..|++.|++|++..|... T Consensus 4 ~gKV~lITGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (281) T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE 40 (281) T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9999999088869999999999987999999989999 No 484 >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} Probab=86.41 E-value=1.2 Score=20.82 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=27.7 Q ss_pred CCCCCCEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7767766898-79-87999999999965990899835888 Q T0604 104 ENLTERPIVI-GF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 104 ~~~~~rVVVV-Ga-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .++.-||++| || +--|...|..|++.|++|++..|... T Consensus 10 ~~L~gKvalVTGas~GIG~aia~~l~~~G~~Vv~~~r~~~ 49 (260) T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQE 49 (260) T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 8889997999378878999999999987998999989889 No 485 >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Probab=86.39 E-value=1 Score=21.29 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=26.5 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 776689879-8799999999996599089983588832 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKEVR 143 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~vg 143 (549) .|.++|.|| +--|...|..|++.|++|++..|..... T Consensus 15 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~ 52 (247) T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP 52 (247) T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHH T ss_conf 99799938888899999999998799899997982210 No 486 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=86.37 E-value=1.2 Score=20.81 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=0.0 Q ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 767766898--79879999999999659908998358 Q T0604 105 NLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 105 ~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg 139 (549) +++.|+++| |++--|...|..|++.|++|++..|. T Consensus 18 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~ 54 (267) T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN 54 (267) T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 7899989994898789999999999879989999798 No 487 >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Probab=86.33 E-value=1.2 Score=20.90 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=0.0 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 6776689879-879999999999659908998358 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg 139 (549) ..|.++|.|| +--|...|..|++.|++|++..|. T Consensus 18 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~ 52 (249) T 1o5i_A 18 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN 52 (249) T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99989994888689999999999879999999899 No 488 >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, structural genomics, PSI; 2.00A {Aquifex aeolicus VF5} Probab=86.27 E-value=0.67 Score=22.38 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=0.0 Q ss_pred CCCCEEEECCC---HHHHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 67766898798---79999999999659908998358883211 Q T0604 106 LTERPIVIGFG---PCGLFAGLVLAQMGFNPIIVERGKEVRER 145 (549) Q Consensus 106 ~~~rVVVVGaG---pAGL~AAl~La~~G~~V~VlErg~~vg~r 145 (549) ..+.++|-||+ --|...|..|++.|++|++..+.+..... T Consensus 20 ~gK~alVTGas~~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~ 62 (285) T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKR 62 (285) T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH T ss_conf 8997999899998679999999999869999998488689999 No 489 >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, structural genomics; HET: NAP; 2.25A {Homo sapiens} Probab=86.18 E-value=1.2 Score=20.75 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=0.0 Q ss_pred CCCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 7887767766898--79879999999999659908998358883211 Q T0604 101 KAPENLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERGKEVRER 145 (549) Q Consensus 101 ~~~~~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg~~vg~r 145 (549) +.+-++.-||++| |++--|+..|..|++.|++|++..|....... T Consensus 38 ~~~grL~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~ 84 (346) T 3kvo_A 38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPK 84 (346) T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSS T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH T ss_conf 99977699879990788699999999999889989999797777899 No 490 >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, lipid metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Probab=86.12 E-value=1.2 Score=20.73 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=0.0 Q ss_pred CCCCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 87767766898--79879999999999659908998358 Q T0604 103 PENLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 103 ~~~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg 139 (549) ..++..||+|| |++--|...|..|++.|++|++..|. T Consensus 2 ~~rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~ 40 (264) T 2pd6_A 2 QNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLD 40 (264) T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 750088889993878789999999999879999999698 No 491 >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Probab=86.09 E-value=0.94 Score=21.44 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=0.0 Q ss_pred CCCEEEECCCHH-HHHHHHHHHHCCCEEEEEECC Q ss_conf 776689879879-999999999659908998358 Q T0604 107 TERPIVIGFGPC-GLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 107 ~~rVVVVGaGpA-GL~AAl~La~~G~~V~VlErg 139 (549) .+.++|.||+-. |...|..|++.|++|++..|. T Consensus 11 GKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~ 44 (254) T 2wsb_A 11 GACAAVTGAGSGIGLEICRAFAASGARLILIDRE 44 (254) T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9989994898789999999999879999999798 No 492 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=86.08 E-value=0.42 Score=23.66 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=0.0 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 767766898798799999999996599089983588 Q T0604 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 105 ~~~~rVVVVGaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ....+|+-||+||.++++.+.....|.+|+.+|..+ T Consensus 121 ~~~~rVLdvGcG~g~lT~i~la~~~g~~V~gIDis~ 156 (298) T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEP 156 (298) T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSH T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCH T ss_conf 999989999173249999999965699899993999 No 493 >1o89_A YHDH, B3253, YHDH; structural genomics, unknown function, possible NADPH-dependent quinone oxidoreductase; 2.25A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 PDB: 1o8c_A* Probab=85.98 E-value=0.96 Score=21.39 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=0.0 Q ss_pred CCCCCCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 788776776689879-87999999999965990899835888 Q T0604 101 KAPENLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 101 ~~~~~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .+.......|+|.|| |+.|+++...+...|.+|+.+++... T Consensus 162 ~~~~~~~~~vvi~gg~g~~g~~a~~la~~~G~~vi~~~~~~~ 203 (345) T 1o89_A 162 AGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 203 (345) T ss_dssp TTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 066789999999988878999999888733860464126177 No 494 >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, alternative splicing, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Probab=85.93 E-value=0.95 Score=21.41 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=0.0 Q ss_pred CCCCCCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 88776776689879-8799999999996599089983588 Q T0604 102 APENLTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 102 ~~~~~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~ 140 (549) +.-....+|+|.|| |+.|++++..+...|.+|++....+ T Consensus 158 ~~~~~g~~VlV~ga~g~vG~~ai~~a~~~g~~vi~~~~~~ 197 (354) T 2j8z_A 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354) T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 4799999999978989899999999875598599997647 No 495 >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Probab=85.87 E-value=1.3 Score=20.65 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=0.0 Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6776689879-87999999999965990899835888 Q T0604 106 LTERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 106 ~~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ..|.++|.|| +--|...|..|++.|++|+++.|... T Consensus 11 kGKvalITGas~GIG~aia~~la~~Ga~V~~~~~~~~ 47 (265) T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS 47 (265) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9998999286878999999999987998999969878 No 496 >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogenase; structural genomics, short-chain dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Probab=85.80 E-value=1.3 Score=20.63 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=0.0 Q ss_pred CCCCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 87767766898--79879999999999659908998358 Q T0604 103 PENLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERG 139 (549) Q Consensus 103 ~~~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg 139 (549) ..-++-||++| |++--|...|..|++.|++|++..|. T Consensus 2 ~~~L~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~ 40 (267) T 2gdz_A 2 AHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN 40 (267) T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 865399889993868789999999999879989999797 No 497 >2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Probab=85.75 E-value=0.79 Score=21.91 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=0.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 77668987987999999999965990899835 Q T0604 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVER 138 (549) Q Consensus 107 ~~rVVVVGaGpAGL~AAl~La~~G~~V~VlEr 138 (549) .+.|+|+|+|-++-.+++.|.+.|.+++++.| T Consensus 364 ~~~vlilGaGGaarai~~al~~~g~~i~i~nr 395 (523) T 2o7s_A 364 SKTVVVIGAGGAGKALAYGAKEKGAKVVIANR 395 (523) T ss_dssp --CEEEECCSHHHHHHHHHHHHHCC-CEEEES T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCEEEEECC T ss_conf 33635440643889999999866987883068 No 498 >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Probab=85.73 E-value=0.78 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=0.0 Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 6689879-87999999999965990899835888 Q T0604 109 RPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 109 rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) ||+|.|| |--|...+-.|.++|++|+.+-|.++ T Consensus 2 kIlV~GatG~iG~~lv~~Ll~~g~~V~~~~R~~~ 35 (219) T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE 35 (219) T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 5999999988999999999978398999988878 No 499 >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Probab=85.68 E-value=1.3 Score=20.60 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=0.0 Q ss_pred CCCCCCEEEE--CCCHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7767766898--798799999999996599089983588 Q T0604 104 ENLTERPIVI--GFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549) Q Consensus 104 ~~~~~rVVVV--GaGpAGL~AAl~La~~G~~V~VlErg~ 140 (549) ..+..+|+|| |++--|...|..|++.|.+|++..+.. T Consensus 42 ~~~~~~VAlITGgs~GIG~aiA~~La~~Ga~Vvi~~~~~ 80 (328) T 2qhx_A 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS 80 (328) T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 899999899947788899999999998799899982898 No 500 >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Probab=85.67 E-value=1.3 Score=20.61 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=0.0 Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 776689879-87999999999965990899835888 Q T0604 107 TERPIVIGF-GPCGLFAGLVLAQMGFNPIIVERGKE 141 (549) Q Consensus 107 ~~rVVVVGa-GpAGL~AAl~La~~G~~V~VlErg~~ 141 (549) .|+|+|.|| +--|...|..|++.|++|+++++... T Consensus 7 ~K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 42 (241) T 1dhr_A 7 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 42 (241) T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999689878999999999988999999968966 Done!