HHsearch: T0605 VS scop

Query         T0605 3NMD, , 72 residues
Match_columns 72
No_of_seqs    11 out of 13
Neff          2.0 
Searched_HMMs 15564
Date          Mon Jul  5 08:52:29 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0605.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0605.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ykha1 a.252.1.2 (A:111-205)   65.8     5.5 0.00035   19.3   5.1   52   20-71     37-94  (95)
  2 d1t98a2 a.47.6.1 (A:119-281) C  63.0     5.6 0.00036   19.2   4.3   53   16-68     92-147 (163)
  3 d1deqb_ i.9.1.1 (B:) Fibrinoge  34.0      18  0.0012   16.2   7.7   15   44-58     40-54  (380)
  4 d1t98a2 a.47.6.1 (A:119-281) C  26.3      25  0.0016   15.4   6.4   53   16-68     92-147 (163)
  5 d1go4e_ h.1.22.1 (E:) Mitotic   23.0      29  0.0018   15.0   6.3   45   27-71      8-84  (87)
  6 d1vcsa1 a.47.2.1 (A:8-96) Vesi  18.3      36  0.0023   14.4   6.3   25   38-62     29-53  (89)
  7 d1k1fa_ a.147.1.1 (A:) Bcr-Abl  18.3      36  0.0023   14.4   4.2   21   45-65     31-51  (67)
  8 d1k1fa_ a.147.1.1 (A:) Bcr-Abl  16.4      40  0.0026   14.1   4.2   21   45-65     31-51  (67)
  9 d1usea_ h.1.29.1 (A:) Vasodila  15.5      43  0.0027   14.0   4.8   28   37-64     10-38  (40)
 10 d1k8ib2 d.19.1.1 (B:1-94) Clas  14.7      45  0.0029   13.8   2.8   29   43-71     55-83  (94)

No 1  
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.82  E-value=5.5  Score=19.32  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             18999999988---89999---889999999999873399999999988998986515
Q T0605            20 SLRDLQYALQE---KIEEL---RQRDALIDELELELDQKDELIQMLQNELDKYRSVIR   71 (72)
Q Consensus        20 slrdLq~aL~~---K~eEl---r~rDe~I~~LE~ELdeKD~lIr~LqnELDKyRsvvr   71 (72)
                      .+.||..+|--   -+-+.   --|+.+|-.+|.-+++|-+.|+.+..-.|+.+.++.
T Consensus        37 kvedl~~LfiN~HhllNeyRPhQAResLi~lme~Ql~~kr~~~~~i~~~~~~~~~~L~   94 (95)
T d1ykha1          37 KVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT   94 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6999999999999998702807679999999999999999999999999999998764


No 2  
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=62.96  E-value=5.6  Score=19.24  Aligned_cols=53  Identities=32%  Similarity=0.383  Sum_probs=38.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             111018999999988899998899999999---99873399999999988998986
Q T0605            16 EGRGSLRDLQYALQEKIEELRQRDALIDEL---ELELDQKDELIQMLQNELDKYRS   68 (72)
Q Consensus        16 ~~~gslrdLq~aL~~K~eElr~rDe~I~~L---E~ELdeKD~lIr~LqnELDKyRs   68 (72)
                      |.-||+|+||--|+.-...+---=-.|++-   -.+++.-|.++..||+-+|+.-|
T Consensus        92 eTs~tLRELqdtL~aagd~lqa~Ll~IQ~a~~~~~~l~~vd~l~~~lq~klDRI~s  147 (163)
T d1t98a2          92 ETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIIS  147 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87655999999999826899999999999974772377899999999999999998


No 3  
>d1deqb_ i.9.1.1 (B:) Fibrinogen {Cow (Bos taurus) [TaxId: 9913]} SCOP: d1ei3b_ d1deqc_ d2dkla1
Probab=33.96  E-value=18  Score=16.17  Aligned_cols=15  Identities=13%  Similarity=0.045  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999987339999999
Q T0605            44 ELELELDQKDELIQM   58 (72)
Q Consensus        44 ~LE~ELdeKD~lIr~   58 (72)
                      .|+..+.+....|+.
T Consensus        40 ~Lee~l~e~e~eiq~   54 (380)
T d1deqb_          40 LLKNMWKGRQNQVQD   54 (380)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 4  
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.27  E-value=25  Score=15.37  Aligned_cols=53  Identities=32%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1110189999999888999988999999999---9873399999999988998986
Q T0605            16 EGRGSLRDLQYALQEKIEELRQRDALIDELE---LELDQKDELIQMLQNELDKYRS   68 (72)
Q Consensus        16 ~~~gslrdLq~aL~~K~eElr~rDe~I~~LE---~ELdeKD~lIr~LqnELDKyRs   68 (72)
                      |--||+|+||--|+.-...+---=-.|++.-   -+|+--|.+|--||+-+|+.-|
T Consensus        92 ets~tLRELqdtL~aagd~lqa~Ll~IQ~~~~~~~~l~~vd~li~~lq~klDRI~S  147 (163)
T d1t98a2          92 ETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIIS  147 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87677999999998616999999999999960881589999999999987899999


No 5  
>d1go4e_ h.1.22.1 (E:) Mitotic arrest deficient-like 1, Mad1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1go4g_ d1go4h_
Probab=23.04  E-value=29  Score=15.00  Aligned_cols=45  Identities=31%  Similarity=0.386  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHC
Q ss_conf             9988899998899----999999998733----------------------------99999999988998986515
Q T0605            27 ALQEKIEELRQRD----ALIDELELELDQ----------------------------KDELIQMLQNELDKYRSVIR   71 (72)
Q Consensus        27 aL~~K~eElr~rD----e~I~~LE~ELde----------------------------KD~lIr~LqnELDKyRsvvr   71 (72)
                      .|+.++++|+.--    +..+.||.+|..                            .-..+..||.|+.+.|..||
T Consensus         8 ~Lr~kieeL~~E~~rL~e~k~~LE~~lE~~~LqGd~d~~~tKVvH~s~NPas~A~q~~~~~~~~Lq~E~ErLr~~vr   84 (87)
T d1go4e_           8 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR   84 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999998786204688742344431584789999999999999999999999965


No 6  
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.34  E-value=36  Score=14.40  Aligned_cols=25  Identities=20%  Similarity=0.502  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999873399999999988
Q T0605            38 RDALIDELELELDQKDELIQMLQNE   62 (72)
Q Consensus        38 rDe~I~~LE~ELdeKD~lIr~LqnE   62 (72)
                      |...|...|..|++-+++|+.+..|
T Consensus        29 rk~~l~~ie~~leEA~ell~qMelE   53 (89)
T d1vcsa1          29 KKQMVANVEKQLEEARELLEQMDLE   53 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8899999997689999999999999


No 7  
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1k1fd_ d1k1fg_ d1k1fe_ d1k1fh_
Probab=18.30  E-value=36  Score=14.39  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999873399999999988998
Q T0605            45 LELELDQKDELIQMLQNELDK   65 (72)
Q Consensus        45 LE~ELdeKD~lIr~LqnELDK   65 (72)
                      .|+||+.--+-|++|+-|+.+
T Consensus        31 ~EqELErCk~~irrLeqeln~   51 (67)
T d1k1fa_          31 IEQELERAKASIRRLEQEVNQ   51 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999999989


No 8  
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.35  E-value=40  Score=14.11  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999873399999999988998
Q T0605            45 LELELDQKDELIQMLQNELDK   65 (72)
Q Consensus        45 LE~ELdeKD~lIr~LqnELDK   65 (72)
                      .|+||+.--..|++|+-++.+
T Consensus        31 iE~eLerCk~~irrLeqel~~   51 (67)
T d1k1fa_          31 IEQELERAKASIRRLEQEVNQ   51 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999


No 9  
>d1usea_ h.1.29.1 (A:) Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1usda_
Probab=15.48  E-value=43  Score=13.97  Aligned_cols=28  Identities=32%  Similarity=0.583  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             89999999999873-39999999998899
Q T0605            37 QRDALIDELELELD-QKDELIQMLQNELD   64 (72)
Q Consensus        37 ~rDe~I~~LE~ELd-eKD~lIr~LqnELD   64 (72)
                      .|.++.++.-+||- -|+++|--...||-
T Consensus        10 ~KqeiL~EvrkEl~K~K~EIIdAi~~El~   38 (40)
T d1usea_          10 VKQELLEEVKKELQKVKEEIIEAFVQELR   38 (40)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999998999999999999632


No 10 
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=14.71  E-value=45  Score=13.85  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999873399999999988998986515
Q T0605            43 DELELELDQKDELIQMLQNELDKYRSVIR   71 (72)
Q Consensus        43 ~~LE~ELdeKD~lIr~LqnELDKyRsvvr   71 (72)
                      ..+-.-|..++.+|++|+|++-+--.-.+
T Consensus        55 ~~is~~LN~~~~lvqRl~~glq~C~~htq   83 (94)
T d1k8ib2          55 EIISNILNEQESLIHRLQNGLQDCATHTQ   83 (94)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999974670899999865777899888


Done!