Query T0606 ZP_02040151.1, Ruminococcus gnavus , 169 residues Match_columns 169 No_of_seqs 5 out of 7 Neff 2.1 Searched_HMMs 22458 Date Mon Jul 5 08:49:50 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0606.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0606.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vr5_A Oligopeptide ABC transp 95.3 0.12 5.5E-06 29.3 8.8 94 52-146 267-423 (547) 2 2grv_A LPQW; substrate-binding 95.1 0.12 5.2E-06 29.4 8.2 57 89-145 409-466 (621) 3 2o7i_A Oligopeptide ABC transp 94.1 0.32 1.4E-05 27.0 9.0 46 100-145 383-428 (592) 4 2noo_A NIKA, nickel-binding pe 91.8 0.69 3.1E-05 25.0 8.6 97 49-146 245-396 (502) 5 1zu0_A Chitin oligosaccharide 91.1 0.38 1.7E-05 26.5 5.6 59 88-146 350-408 (529) 6 1jet_A OPPA, oligo-peptide bin 77.9 3.9 0.00017 20.8 6.1 98 48-146 268-415 (517) 7 2wol_A ORF15, clavulanic acid 76.9 4.2 0.00019 20.6 6.3 99 47-146 299-452 (562) 8 2zsh_A Probable gibberellin re 69.8 6.3 0.00028 19.6 5.1 41 88-129 284-324 (351) 9 3ebl_A Gibberellin receptor GI 67.7 6.9 0.00031 19.4 4.7 98 31-129 192-323 (365) 10 1uqw_A Putative binding protei 67.3 7.1 0.00032 19.3 8.1 98 48-146 261-405 (509) 11 1dpe_A Dipeptide-binding prote 60.5 5.8 0.00026 19.8 3.2 99 47-146 259-404 (507) 12 3d7r_A Esterase; alpha/beta fo 59.6 9.9 0.00044 18.5 4.8 41 88-129 255-295 (326) 13 1xoc_A Oligopeptide-binding pr 59.4 10 0.00045 18.5 5.0 57 89-145 359-417 (520) 14 3ga7_A Acetyl esterase; phosph 59.1 10 0.00045 18.5 5.0 41 88-129 253-293 (326) 15 2o7r_A CXE carboxylesterase; a 56.7 11 0.00047 18.3 4.0 37 92-129 268-304 (338) 16 1jji_A Carboxylesterase; alpha 55.6 12 0.00052 18.1 4.5 98 31-129 155-283 (311) 17 1jkm_A Brefeldin A esterase; s 51.0 14 0.00062 17.7 4.8 40 89-129 288-327 (361) 18 1lzl_A Heroin esterase; alpha/ 48.7 15 0.00067 17.5 4.7 40 89-129 249-288 (323) 19 2e5a_A Lipoyltransferase 1; li 47.5 16 0.0007 17.4 4.9 52 78-129 75-128 (347) 20 3k6k_A Esterase/lipase; alpha/ 47.3 16 0.00071 17.3 4.8 98 31-129 152-279 (322) 21 1ztp_A Basophilic leukemia exp 39.8 6.4 0.00028 19.6 0.7 115 34-152 19-141 (251) 22 3fak_A Esterase/lipase, ESTE5; 37.2 23 0.001 16.4 4.8 40 89-129 240-279 (322) 23 1vqz_A Lipoate-protein ligase, 35.1 25 0.0011 16.2 3.9 64 78-141 82-148 (341) 24 2hm7_A Carboxylesterase; alpha 34.7 25 0.0011 16.2 4.6 41 88-129 240-280 (310) 25 3drf_A Oligopeptide-binding pr 33.0 27 0.0012 16.0 7.5 59 88-146 407-472 (590) 26 2aif_A Ribosomal protein L7A; 31.9 28 0.0013 15.9 4.3 71 45-115 1-84 (135) 27 2c7b_A Carboxylesterase, ESTE1 30.1 31 0.0014 15.7 4.9 41 88-129 239-279 (311) 28 3kws_A Putative sugar isomeras 29.4 26 0.0012 16.1 2.5 23 103-125 144-166 (287) 29 1v95_A Nuclear receptor coacti 29.3 32 0.0014 15.7 3.3 50 99-148 16-71 (130) 30 1g2i_A Protease I; intracellul 24.1 30 0.0014 15.8 2.0 13 65-77 78-90 (166) No 1 >1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} SCOP: c.94.1.1 Probab=95.26 E-value=0.12 Score=29.26 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=70.2 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH------------------------------------C---------- Q ss_conf 157874123378882678999999851712330------------------------------------2---------- Q T0606 52 SYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSI------------------------------------R---------- 85 (169) Q Consensus 52 ~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~------------------------------------~---------- 85 (169) .+.+++|....|++|.++|+-|.... ++.... . T Consensus 267 ~~~l~~N~~~~~~~d~~vRqAl~~aI-Dr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL 345 (547) T 1vr5_A 267 TAGIYINVNKYPLSIPEFRRAMAYAI-NPEKIVTRAYENMVTAANPAGILPLPGYMKYYPKEVVDKYGFKYDPEMAKKIL 345 (547) T ss_dssp EEEEEECTTSTTTTCHHHHHHHHHHC-CHHHHHHHTTTTSSEECCTTCCCSSHHHHTTCCHHHHHHHCCCSCHHHHHHHH T ss_pred CEEEEEECCCCCCCCHHHHHHHHHCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 13676302577655877764433047-99999999984256433223432224666677731123445334979999989 Q ss_pred -----------------CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC Q ss_conf -----------------6664036888612672377889999999974488414301122244443203512478613 Q T0606 86 -----------------TDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169) Q Consensus 86 -----------------~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169) +...+++++.+....-....-+..+.+.|+.+|.+|++++.+..-+.++..+|+||+++.. T Consensus 346 ~eaG~~~~~~dg~~~~~~G~~l~l~l~~~~~~~~~~~~a~~i~~~l~~~GI~v~i~~~~~~~~~~~~~~g~~d~~~~~ 423 (547) T 1vr5_A 346 DELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNN 423 (547) T ss_dssp HHTTCBCCSSSSSCBCTTSCCCCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECCCHHHHHHHHHHTCCSEEEEC T ss_pred HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHC T ss_conf 973986458776401477666421323688862678999999999764020033222211244443321210133205 No 2 >2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str} Probab=95.08 E-value=0.12 Score=29.40 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=45.4 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCC-CHHHHHHHHCCCEEEEEC Q ss_conf 403688861267237788999999997448841430112-224444320351247861 Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYS-GTMLRSRAVSGKYEAFLS 145 (169) Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS-~tMlrSravsGkYd~fla 145 (169) .+++++.+...+-....-|..+.+.|+++|.+|++++.. .+++..+.-.|+||+++. T Consensus 409 ~l~l~l~~~~~~~~~~~~A~~i~~~L~~iGI~v~i~~~~~~~~~~~~~~~g~~D~~~g 466 (621) T 2grv_A 409 PLTIVLGVASNDPTSVAVANTAADQLRNVGIDASVLALDPVALYGDALVNNRVDAVVG 466 (621) T ss_dssp ECEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHTTTTTTCCSEEEE T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCEEEEE T ss_conf 5899999579996899999999999984695899998786999999873899459997 No 3 >2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A* Probab=94.08 E-value=0.32 Score=26.96 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=39.3 Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEEC Q ss_conf 7237788999999997448841430112224444320351247861 Q T0606 100 DYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLS 145 (169) Q Consensus 100 dy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla 145 (169) .-....-|..+.+.|+++|.+|++++.....+.++..+|+||+++. T Consensus 383 ~~~~~~~a~~i~~~l~~iGI~v~i~~~~~~~~~~~~~~g~~d~~~~ 428 (592) T 2o7i_A 383 WTDWMMMCEMIAKNLRSIGIDVKTEFPDFSVWADRMTKGTFDLIIS 428 (592) T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHTTCCSEEEE T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHCCCCCEEEE T ss_conf 8689999999999999779189999618999999997799769997 No 4 >2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A Probab=91.84 E-value=0.69 Score=25.04 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=67.7 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHH----------------------------------------H---- Q ss_conf 35515787412337888267899999985171233----------------------------------------0---- Q T0606 49 LEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDS----------------------------------------I---- 84 (169) Q Consensus 49 LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~----------------------------------------~---- 84 (169) --+.+.+.+|....+++|.++|.-+..+. ++.+. + T Consensus 245 ~~~~~~l~~N~~~~~~~d~~vR~Ai~~ai-dr~~i~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~d~~~A~~lL~eaG 323 (502) T 2noo_A 245 PIETVMLALNTAKAPTNELAVREALNYAV-NKKSLIDNALYGTQQVADTLFAPSVPXANLGLKPSQYDPQKAKALLEKAG 323 (502) T ss_dssp CCCEEEEEECTTSTTTTSHHHHHHHHHHC-CHHHHHHHHTTTCSEECSSSSCTTSTTCCCCCCCCCCCHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 33443123456687667999999999875-78999999857974015766699976667777755579899988899728 Q ss_pred -----------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC Q ss_conf -----------26664036888612672377889999999974488414301122244443203512478613 Q T0606 85 -----------RTDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169) Q Consensus 85 -----------~~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169) .+...+.+++.+..++-....-|..+.+.|+++|++|++++.+..-+.++.-+|+||+++.. T Consensus 324 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~d~~~~~ 396 (502) T 2noo_A 324 WTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIXARQRDGRFGMIFHR 396 (502) T ss_dssp CBCCTTCSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHTCCSEEEEE T ss_pred CCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCEEEEE T ss_conf 7566787023124443127874013440379999999999987395799996043779998746765789870 No 5 >1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A* Probab=91.14 E-value=0.38 Score=26.53 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=50.3 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC Q ss_conf 64036888612672377889999999974488414301122244443203512478613 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169) ..+++.+.+.........-+..+.+.|+.+|++|++++.....+.++.-+|+||++... T Consensus 350 ~~l~l~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~i~~~~~~~~~~~~~~g~~d~~~~~ 408 (529) T 1zu0_A 350 KSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTN 408 (529) T ss_dssp CCCCEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHTTCCSEEEEE T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEC T ss_conf 55430331267866899999999999985202233333110231022105764379854 No 6 >1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ... Probab=77.94 E-value=3.9 Score=20.80 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=65.3 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHH-------------------------------------------- Q ss_conf 235515787412337888267899999985171233-------------------------------------------- Q T0606 48 QLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDS-------------------------------------------- 83 (169) Q Consensus 48 ~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~-------------------------------------------- 83 (169) +--+.+.+.+|..-.|++|.++|.-+.-+. +++.. T Consensus 268 ~~~~~~~~~~N~~~~~~~d~~vRqAi~~ai-dr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ 346 (517) T 1jet_A 268 PYLCTYYYEINNQKAPFNDVRVRTALKLAL-DRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKK 346 (517) T ss_dssp EEEEEEEEEECTTSTTTTSHHHHHHHHHHS-CHHHHHHTTTCSSCEECSSSSCTTSTTCCCCCCHHHHSCHHHHHHHHHH T ss_pred CCCCEEHHHCCCCCCCCCCHHHHHHHHHCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHH T ss_conf 763200011045678667799999998621-7999999985688644546679986655546811210022148999999 Q ss_pred ------HCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC Q ss_conf ------026664036888612672377889999999974488414301122244443203512478613 Q T0606 84 ------IRTDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169) Q Consensus 84 ------~~~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169) ......+++++.+...+-.-.-.+.-...-++..|++|++++.....+.++.-+|+||+.+.. T Consensus 347 ll~~aG~~~g~~l~l~~~~~~~~~~~~~~~~~~~~~~~~iGI~~~i~~~~~~~~~~~~~~~~~d~~~~~ 415 (517) T 1jet_A 347 LLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAG 415 (517) T ss_dssp HHHHTTCCSSSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHTCCSEEEEE T ss_pred HHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEE T ss_conf 999747767997699999568817878899999999996598578874668999877545885589851 No 7 >2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A* Probab=76.86 E-value=4.2 Score=20.62 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=64.2 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHC------------------------------C------C--- Q ss_conf 023551578741233788826789999998517123302------------------------------6------6--- Q T0606 47 AQLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIR------------------------------T------D--- 87 (169) Q Consensus 47 a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~------------------------------~------~--- 87 (169) ....+.+.+.+|+.-.|++|.++|.-|.- +.++..... . + T Consensus 299 ~~~~~~~~~~~N~~~~~~~d~~vR~Al~~-aidr~~i~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~~d~~~ 377 (562) T 2wol_A 299 PRTSFLHFVAMQPHIPPFDNVHVRRAVQY-AADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDA 377 (562) T ss_dssp CEEEEEEEEEECTTSTTTTSHHHHHHHHH-TCCHHHHHHHTTTTTSSCEECSSSSCTTSTTCCCCCSSCCCTTSSCCHHH T ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHH-HHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 76202214340666775567899999998-32999999996576566645545568632356666655444310001999 Q ss_pred --------C-CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHH-------HHCCCEEEEECC Q ss_conf --------6-4036888612672377889999999974488414301122244443-------203512478613 Q T0606 88 --------T-ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSR-------AVSGKYEAFLSE 146 (169) Q Consensus 88 --------~-~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSr-------avsGkYd~fla~ 146 (169) + ...+++.+...+-.....|..+++.|+.+|.+|++++....-+.++ .-.|.||+++.. T Consensus 378 a~~ll~~aG~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~GI~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 452 (562) T 2wol_A 378 ARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTD 452 (562) T ss_dssp HHHHHHHTTCTTCEEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEEECSTTCCCCCTTCHHHHHHHTCSEEEEE T ss_pred HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCHHHHHCCCCCEEEEC T ss_conf 999998648988750254147323566788999999964948999970589977764034345653686657642 No 8 >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* Probab=69.79 E-value=6.3 Score=19.63 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=34.9 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 640368886126723778899999999744884143011222 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) ..+..-+.+++.| +|..-+...+++|+.+|-.|++..|-+. T Consensus 284 ~lPp~lI~~g~~D-~L~d~~~~ya~~L~~aGv~v~l~~~~g~ 324 (351) T 2zsh_A 284 SFPKSLVVVAGLD-LIRDWQLAYAEGLKKAGQEVKLMHLEKA 324 (351) T ss_dssp CCCEEEEEEETTS-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9899899978878-7779999999999986992899998999 No 9 >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* Probab=67.73 E-value=6.9 Score=19.38 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=57.0 Q ss_pred HHCCCCCHHHHHHHHHCC-----CCCCEEEEECCCCCCCCHHHHH--------------HHHHHHHCCCH-HH------- Q ss_conf 210467002334321002-----3551578741233788826789--------------99999851712-33------- Q T0606 31 AVTGATPKAKKAAQSSAQ-----LEGSYIFCMNPLLDKLSDEDIR--------------EQLKAFVTGKT-DS------- 83 (169) Q Consensus 31 altgAt~kAkkAaq~~a~-----LeG~Yll~iNp~ld~~~~~~~R--------------~~Lka~a~g~t-~~------- 83 (169) .+.|-+.++-=|++.+.. +.-.-..-+.|..++.....-. .....+.+.+. ++ T Consensus 192 ~l~GdSAGGnLA~~~a~~~~~~~~~~~g~ili~P~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~~p~~sP 271 (365) T 3ebl_A 192 FLSGDSSGGNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNP 271 (365) T ss_dssp EEEEETHHHHHHHHHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCT T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 99971576178999999976538764443101454365545421444134655789999999986356444545655576 Q ss_pred HC-CCC------CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 02-666------40368886126723778899999999744884143011222 Q T0606 84 IR-TDT------ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 84 ~~-~~~------~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) +. .+. .+..-+.+++.| +|..-+..++++|+.+|-.|++..|.+. T Consensus 272 ~~~~~~~l~glp~pp~li~~g~~D-~L~d~~~~y~~~L~~~Gv~vel~~~~g~ 323 (365) T 3ebl_A 272 FGPNGRRLGGLPFAKSLIIVSGLD-LTCDRQLAYADALREDGHHVKVVQCENA 323 (365) T ss_dssp TSTTCCCCTTSCCCCEEEEEETTS-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCCHHHHCCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 667535552899999899975888-7768999999999987994899998999 No 10 >1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1 Probab=67.25 E-value=7.1 Score=19.32 Aligned_cols=98 Identities=11% Similarity=0.145 Sum_probs=65.6 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHC---------------------------------------CC- Q ss_conf 23551578741233788826789999998517123302---------------------------------------66- Q T0606 48 QLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIR---------------------------------------TD- 87 (169) Q Consensus 48 ~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~---------------------------------------~~- 87 (169) +--+.+.+.+|....|++|.++|+-+.-+. ++++... .+ T Consensus 261 ~~~~~~~~~~n~~~~~~~d~~vR~Al~~ai-dr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ak~lL~~aG 339 (509) T 1uqw_A 261 PSIMQRYISMNVTQKPFDNPKVREALNYAI-NRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAG 339 (509) T ss_dssp EEEEEEEEEECTTSTGGGSHHHHHHHHHHC-CHHHHHHHHHTTCEEECSSSSCTTSBTCCCCCCCCCCHHHHHHHHHHHT T ss_pred CCCCEEECCCCCCCCCCCCHHHHHHHHCCC-CHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 631000013454456558988988863542-4656656440036321356778754444457888889999999988531 Q ss_pred --CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH-----CCCEEEEECC Q ss_conf --6403688861267237788999999997448841430112224444320-----3512478613 Q T0606 88 --TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAV-----SGKYEAFLSE 146 (169) Q Consensus 88 --~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSrav-----sGkYd~fla~ 146 (169) .-..+.+.+..+.-....-+..+.+.|+.+|++|++++....-+.++.. .+.|++|... T Consensus 340 ~~~g~~~~i~~~~~~~~~~~~a~~i~~~l~~~Gi~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g 405 (509) T 1uqw_A 340 YPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTG 405 (509) T ss_dssp CTTCEEEEEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHTTSCCTTTCCCCEEEEE T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCCCEEEEC T ss_conf 222222211122223315689999999997466424899806899999987323533353404412 No 11 >1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A Probab=60.50 E-value=5.8 Score=19.81 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=65.8 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHC-----------C----------C------------------ Q ss_conf 023551578741233788826789999998517123302-----------6----------6------------------ Q T0606 47 AQLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIR-----------T----------D------------------ 87 (169) Q Consensus 47 a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~-----------~----------~------------------ 87 (169) .+--+.+.+.+|....++.|.++|+-+... .+++...+ + + T Consensus 259 ~~~~~~~~l~~N~~~~~~~d~~vR~Al~~a-idr~~i~~~~~~g~~~~a~~~~p~~~~~~~~~~~~~~~~~~~A~~ll~~ 337 (507) T 1dpe_A 259 MPGLNVGYLSYNVQKKPLDDVKVRQALTYA-VNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKE 337 (507) T ss_dssp EECSEEEEEEECTTSTTTTSHHHHHHHHHT-SCHHHHHHHHHTTSEEECSSSSCTTSTTCCTTCCCCCCCHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHH-CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 477510223112799877899999999997-0999999998589761157766997556576533333219999999998 Q ss_pred ----CCCEEEEEE----ECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC Q ss_conf ----640368886----12672377889999999974488414301122244443203512478613 Q T0606 88 ----TELSFDIYV----SETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169) Q Consensus 88 ----~~~~~~l~v----setdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169) ......+.. ....-+-...+..+++.|+++|..|++.+........+..+|+||..+.. T Consensus 338 aG~~~g~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~d~~~~~ 404 (507) T 1dpe_A 338 AGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMG 404 (507) T ss_dssp TTCTTCEEEEEECCSSCBTTBSCHHHHHHHHHHHHHTTTEEEEEECCCHHHHHHHHHTTCCSEEEEE T ss_pred HCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCC T ss_conf 2642488763245235567763778999999999872696355662368999998764797532233 No 12 >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} Probab=59.64 E-value=9.9 Score=18.51 Aligned_cols=41 Identities=2% Similarity=-0.052 Sum_probs=34.6 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 640368886126723778899999999744884143011222 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) ..+..-+.+++.| +|...+.+++++|+.+|.+|++..|-+. T Consensus 255 ~lPP~~i~~g~~D-~l~~d~~~~~~~l~~~gv~v~~~~~~g~ 295 (326) T 3d7r_A 255 GLPPVYMFGGGRE-MTHPDMKLFEQMMLQHHQYIEFYDYPKM 295 (326) T ss_dssp TCCCEEEEEETTS-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9899899985877-8669999999999977998899997989 No 13 >1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1 Probab=59.43 E-value=10 Score=18.48 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=42.8 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEE--EEEC Q ss_conf 40368886126723778899999999744884143011222444432035124--7861 Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYE--AFLS 145 (169) Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd--~fla 145 (169) .+++++.+....-....-|..+.+.|+..|++|++++....-+.++...|+++ ++.. T Consensus 359 ~l~l~~~~~~~~~~~~~~a~~i~~~l~~iGi~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 417 (520) T 1xoc_A 359 KFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVM 417 (520) T ss_dssp ECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHSTTTCCCSEEEE T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCEEE T ss_conf 57999994688504999999999999865996313210117999998642024451121 No 14 >3ga7_A Acetyl esterase; phosphoserine, IDP00896, cytoplasm, hydrolase, serine esterase, structural genomics; HET: SEP MSE; 1.55A {Salmonella typhimurium} Probab=59.13 E-value=10 Score=18.45 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=34.6 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 640368886126723778899999999744884143011222 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) +.+..-+.+++.| +|..-+.+++++|+.+|-+|++..|.+. T Consensus 253 ~lPP~li~~g~~D-~l~d~~~~~~~~L~~~gv~v~~~~~~g~ 293 (326) T 3ga7_A 253 DVPPCFIASAEFD-PLIDDSRLLHQTLQAHQQPCEYKMYPGT 293 (326) T ss_dssp CCCCEEEEEETTC-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCCEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 8998799980888-8768999999999987997899997989 No 15 >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A Probab=56.75 E-value=11 Score=18.34 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.6 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 68886126723778899999999744884143011222 Q T0606 92 FDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 92 ~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) .-+.++|.| +|.--+..+++||..+|-+|.+..|.+. T Consensus 268 ~li~~~~~D-~L~de~~~~a~~L~~~Gv~v~~~~~~g~ 304 (338) T 2o7r_A 268 VMVVGCHGD-PMIDRQMELAERLEKKGVDVVAQFDVGG 304 (338) T ss_dssp EEEEEETTS-TTHHHHHHHHHHHHHTTCEEEEEEESSC T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 999951786-8899999999999987996899998999 No 16 >1jji_A Carboxylesterase; alpha-beta hydrolase fold; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 Probab=55.65 E-value=12 Score=18.11 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=57.9 Q ss_pred HHCCCCCHHHHHHHHHC------CCCCCEEEEECCCCCCCCHHHHHHH------------HHHHH----CCCHHH----- Q ss_conf 21046700233432100------2355157874123378882678999------------99985----171233----- Q T0606 31 AVTGATPKAKKAAQSSA------QLEGSYIFCMNPLLDKLSDEDIREQ------------LKAFV----TGKTDS----- 83 (169) Q Consensus 31 altgAt~kAkkAaq~~a------~LeG~Yll~iNp~ld~~~~~~~R~~------------Lka~a----~g~t~~----- 83 (169) ++.|.+.++--|+.... .-.......+.|.+|.........+ +..+. .+.... T Consensus 155 ~v~G~SaGg~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (311) T 1jji_A 155 FVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLA 234 (311) T ss_dssp EEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTT T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 99615556531567776554405665301565131312157863032303566555467766544430233333223011 Q ss_pred --HCC--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf --026--6640368886126723778899999999744884143011222 Q T0606 84 --IRT--DTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 84 --~~~--~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) +.. ...+..-+.+++.| +|..-+.++.++|+.+|..|++..|.+. T Consensus 235 sp~~~~~~~~pP~~i~~g~~D-~l~d~~~~~~~~L~~~Gv~v~~~~~~g~ 283 (311) T 1jji_A 235 SVIFADLENLPPALIITAEYD-PLRDEGEVFGQMLRRAGVEASIVRYRGV 283 (311) T ss_dssp SGGGSCCTTCCCEEEEEEEEC-TTHHHHHHHHHHHHHTTCCEEEEEEEEE T ss_pred CCCCCHHHCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 212231315999899973888-8748999999999988996899997999 No 17 >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 Probab=50.96 E-value=14 Score=17.68 Aligned_cols=40 Identities=30% Similarity=0.325 Sum_probs=33.4 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 40368886126723778899999999744884143011222 Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) .+..-+.++|.| +|..-+..++++|+++|.+|++..|.+. T Consensus 288 lPp~li~~g~~D-~l~de~~~~~~~L~~aGv~v~~~~~~g~ 327 (361) T 1jkm_A 288 LPPFVVAVNELD-PLRDEGIAFARRLARAGVDVAARVNIGL 327 (361) T ss_dssp CCCEEEEEETTC-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 999899977888-8889999999999987995899997989 No 18 >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A Probab=48.71 E-value=15 Score=17.47 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=33.6 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 40368886126723778899999999744884143011222 Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) .+..-+.+++.| ++..-+.+++++|+.+|.+|++..|.+. T Consensus 249 ~Pp~li~~g~~D-~l~~~~~~~~~~L~~~G~~v~~~~~~g~ 288 (323) T 1lzl_A 249 LPPTYLSTMELD-PLRDEGIEYALRLLQAGVSVELHSFPGT 288 (323) T ss_dssp CCCEEEEEETTC-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 997599976878-8868999999999987998899997939 No 19 >2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Probab=47.50 E-value=16 Score=17.36 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=41.4 Q ss_pred CCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCC--CCEEECCCCCH Q ss_conf 17123302666403688861267237788999999997448--84143011222 Q T0606 78 TGKTDSIRTDTELSFDIYVSETDYALIRYADSLCERLNDAG--ADVQIKQYSGT 129 (169) Q Consensus 78 ~g~t~~~~~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG--~~V~lk~yS~t 129 (169) +|-..+.|+.+.+.|.+.+...++....+.+.+|+-|...+ +++....-.+. T Consensus 75 tGGGaVyhD~g~l~ys~i~~~~~~~~~~~~~~i~~al~~~~~~l~~~~~~rnDi 128 (347) T 2e5a_A 75 SGGGTVYHDMGNINLTFFTTKKKYDRMENLKLVVRALKAVHPHLDVQATKRFDL 128 (347) T ss_dssp SCSCCEEECTTEEEEEEEECGGGCCHHHHHHHHHHHHHHHSTTCCEEECTTSCE T ss_pred CCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCE T ss_conf 698449965994799998637768989999999999999710472687178872 No 20 >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Probab=47.34 E-value=16 Score=17.35 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=58.7 Q ss_pred HHCCCCCHHHHHHHHHCCC--C----CCEEEEECCCCCCCCH---------------HHHHHHHHHHHCCCHHHHC---- Q ss_conf 2104670023343210023--5----5157874123378882---------------6789999998517123302---- Q T0606 31 AVTGATPKAKKAAQSSAQL--E----GSYIFCMNPLLDKLSD---------------EDIREQLKAFVTGKTDSIR---- 85 (169) Q Consensus 31 altgAt~kAkkAaq~~a~L--e----G~Yll~iNp~ld~~~~---------------~~~R~~Lka~a~g~t~~~~---- 85 (169) ++.|-+.++--|++.+..+ + -..+..+.|.++...+ .+..........+..+... T Consensus 152 ~v~G~SAGg~La~~~a~~~~~~~~~~~~~~~l~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~s 231 (322) T 3k6k_A 152 IIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLIS 231 (322) T ss_dssp EEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTC T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 88537642035678887666518986543331000010343331010033322222377777666304776663475557 Q ss_pred -----CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf -----66640368886126723778899999999744884143011222 Q T0606 86 -----TDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 86 -----~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) ....+..-+.+++.| +|..-+..++++|+.+|-.|++..|-+. T Consensus 232 P~~~~~~~~pP~li~~g~~D-~l~de~~~~~~~L~~~Gv~v~~~~~~g~ 279 (322) T 3k6k_A 232 PVYADLSGLPEMLIHVGSEE-ALLSDSTTLAERAGAAGVSVELKIWPDM 279 (322) T ss_dssp GGGSCCTTCCCEEEEEESSC-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCCCCCCCCEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 53222258980799616868-7679999999999987997899997969 No 21 >1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, protein structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A Probab=39.76 E-value=6.4 Score=19.58 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=61.9 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCC----CEEEEEEECCCCH----HHH Q ss_conf 46700233432100235515787412337888267899999985171233026664----0368886126723----778 Q T0606 34 GATPKAKKAAQSSAQLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRTDTE----LSFDIYVSETDYA----LIR 105 (169) Q Consensus 34 gAt~kAkkAaq~~a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~~~~~----~~~~l~vsetdy~----L~~ 105 (169) +-++-..-|-.+++.++ -++ |..-+.-|.. ++-.=|-.+.--++-++.+-.+ +.-=++|---.|- =+. T Consensus 19 ~~~a~~~aae~~a~d~d-~wi-~fd~r~~~~~--~~~~wL~~~~PS~v~~~g~~~~~~~~~v~WI~v~~~~~~~~~~d~~ 94 (251) T 1ztp_A 19 GFTAEHLAAEAMAADMD-PWL-VFDARTTPAT--ELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQ 94 (251) T ss_dssp GGSHHHHHHHTCCSCCS-CCE-EEETTTSCGG--GHHHHHHHSCTTTSBTTCCTTSSCSSCCSCEEEECTTCCCCCCCHH T ss_pred CCCCCCCHHHHHHHCCC-CEE-EECCCCCCHH--HHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH T ss_conf 77864115788641268-636-7315558578--8899998579613222688887788761189972787787741166 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECCCCEEEH Q ss_conf 89999999974488414301122244443203512478613301202 Q T0606 106 YADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSESDLVST 152 (169) Q Consensus 106 YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~~~~i~~ 152 (169) --..--++|...|-.+++..--..-+--++++||.-+|+.|.+-+|. T Consensus 95 ~L~~a~e~l~~sgr~~tve~l~~LA~~~~v~sGKWMiF~~p~d~VD~ 141 (251) T 1ztp_A 95 GLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDH 141 (251) T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCCEEEEEEECSSHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHH T ss_conf 77789999886266005989999999839313035774182678989 No 22 >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A Probab=37.17 E-value=23 Score=16.42 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=33.2 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 40368886126723778899999999744884143011222 Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) .+..-+..++.| ++..-...+.++|+.+|..|++..|.+. T Consensus 240 ~PP~lI~~g~~D-~l~~~~~~~~~~L~~~Gv~v~~~~~~g~ 279 (322) T 3fak_A 240 LPPLLIHVGRDE-VLLDDSIKLDAKAKADGVKSTLEIWDDM 279 (322) T ss_dssp CCCEEEEEETTS-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 997788724888-8789999999999988997899997989 No 23 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3 Probab=35.07 E-value=25 Score=16.23 Aligned_cols=64 Identities=11% Similarity=0.248 Sum_probs=47.8 Q ss_pred CCCHHHHCCCCCCEEEEEEECCCC---HHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEE Q ss_conf 171233026664036888612672---3778899999999744884143011222444432035124 Q T0606 78 TGKTDSIRTDTELSFDIYVSETDY---ALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYE 141 (169) Q Consensus 78 ~g~t~~~~~~~~~~~~l~vsetdy---~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd 141 (169) +|-..++|+.+.+.|.+.+...+. ..-.+.+.+++-|..-|.++....-.+.....|-++|--+ T Consensus 82 sGGGaVyhd~g~l~~s~i~~~~~~~~~~~~~~~~~ii~aL~~lGi~a~~~~r~Di~v~gkKIsG~A~ 148 (341) T 1vqz_A 82 SGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDGKKFCGNAQ 148 (341) T ss_dssp SCSCCEEECTTEEEEEEEEECCTTCCCSHHHHHHHHHHHHHHTTCCEEEETTTEEEETTEEEEEEEE T ss_pred CCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEECCCEEEEEEE T ss_conf 6996189889967999997365442200999999999999973455387147874006818865334 No 24 >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, X-RAY diffraction; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A Probab=34.70 E-value=25 Score=16.19 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=34.0 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 640368886126723778899999999744884143011222 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) ..+.+-+.+++.| +++.-+..+.++|+.+|..|++..|-+. T Consensus 240 ~~pp~li~~g~~D-~l~~~~~~~~~~L~~~G~~~~~~~~~g~ 280 (310) T 2hm7_A 240 GLPPAYIATAQYD-PLRDVGKLYAEALNKAGVKVEIENFEDL 280 (310) T ss_dssp TCCCEEEEEEEEC-TTHHHHHHHHHHHHHTTCCEEEEEEEEE T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 8984278724877-7737999999999977998899997999 No 25 >3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A Probab=33.04 E-value=27 Score=16.04 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=40.6 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHH-------HHHHHHCCCEEEEECC Q ss_conf 6403688861267237788999999997448841430112224-------4443203512478613 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTM-------LRSRAVSGKYEAFLSE 146 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tM-------lrSravsGkYd~fla~ 146 (169) ..+.+.+.+...+-....-|..+.+.|+++|.+|++.+....- +.+..-+|.||+++.. T Consensus 407 ~~l~l~~~~~~~~~~~~~~a~~i~~~l~~iGi~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 472 (590) T 3drf_A 407 KELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGS 472 (590) T ss_dssp EECEEEEECBCCSTTHHHHHHHHHHHHHHTTCEEEEGGGSCBCHHHHHHHHHSTTCCSSCSEEEEE T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 204799862246630578999999999974966999844707799999976332347883599844 No 26 >2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Probab=31.86 E-value=28 Score=15.92 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=48.8 Q ss_pred HHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH----------CCCHHHHC--CCCCCEEEEEEECCC-CHHHHHHHHHH Q ss_conf 100235515787412337888267899999985----------17123302--666403688861267-23778899999 Q T0606 45 SSAQLEGSYIFCMNPLLDKLSDEDIREQLKAFV----------TGKTDSIR--TDTELSFDIYVSETD-YALIRYADSLC 111 (169) Q Consensus 45 ~~a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a----------~g~t~~~~--~~~~~~~~l~vsetd-y~L~~YA~~Lc 111 (169) ++.|-|.++.+.+||.-.|+.++++..++-.++ .|-.++.+ -.+...+-+--.+.+ .-++++-..|| T Consensus 1 ~~~~~~~~~~~~~~p~a~Pla~~~l~~~i~~lvk~a~~~k~l~~G~~evtK~ie~g~a~lVviA~D~~P~eiv~hlp~LC 80 (135) T 2aif_A 1 GSSQNEASEDTGFNPKAFPLASPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVC 80 (135) T ss_dssp -----------------CCBCCSHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHH T ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH T ss_conf 95433320001568656899999999999999999986288243679999999828883699956799414542478998 Q ss_pred HHHH Q ss_conf 9997 Q T0606 112 ERLN 115 (169) Q Consensus 112 ~RL~ 115 (169) +..+ T Consensus 81 ee~~ 84 (135) T 2aif_A 81 EDKN 84 (135) T ss_dssp HHTT T ss_pred HHCC T ss_conf 7548 No 27 >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} Probab=30.08 E-value=31 Score=15.75 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.9 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH Q ss_conf 640368886126723778899999999744884143011222 Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169) Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169) ..+..-+-+++.| ++..-+.+++++|..+|.+|++..|-+. T Consensus 239 ~~pP~li~~g~~D-~l~~~~~~~~~~L~~~Gv~v~~~~~~g~ 279 (311) T 2c7b_A 239 GLPPALVVTAEYD-PLRDEGELYAYKMKASGSRAVAVRFAGM 279 (311) T ss_dssp TCCCEEEEEETTC-TTHHHHHHHHHHHHHTTCCEEEEEETTC T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 8984488645888-7669999999999988998899997989 No 28 >3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Probab=29.44 E-value=26 Score=16.10 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHCCCCEEECC Q ss_conf 77889999999974488414301 Q T0606 103 LIRYADSLCERLNDAGADVQIKQ 125 (169) Q Consensus 103 L~~YA~~Lc~RL~~AG~~V~lk~ 125 (169) ++.--+.+|+..+..|..+-+-+ T Consensus 144 ~~e~l~~l~~~A~~~Gv~l~iE~ 166 (287) T 3kws_A 144 LCEQFNEMGTFAAQHGTSVIFEP 166 (287) T ss_dssp HHHHHHHHHHHHHHTTCCEEECC T ss_pred HHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99999999999997098799996 No 29 >1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Probab=29.27 E-value=32 Score=15.67 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=37.0 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCC------CEEEEECCCC Q ss_conf 6723778899999999744884143011222444432035------1247861330 Q T0606 99 TDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSG------KYEAFLSESD 148 (169) Q Consensus 99 tdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsG------kYd~fla~~~ 148 (169) ..+.+..||..+-.||+.-|..|++---.+--+.+||+.. -|-+.+.+.+ T Consensus 16 vnk~~~~YAe~Ie~rL~~~gl~vd~lf~n~dv~l~~aL~~vs~~G~~faIlVt~qn 71 (130) T 1v95_A 16 VNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQH 71 (130) T ss_dssp SSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHH T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCC T ss_conf 87754437899999998759778898358745499999988757983699981240 No 30 >1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2 Probab=24.11 E-value=30 Score=15.75 Aligned_cols=13 Identities=8% Similarity=0.067 Sum_probs=5.2 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8267899999985 Q T0606 65 SDEDIREQLKAFV 77 (169) Q Consensus 65 ~~~~~R~~Lka~a 77 (169) .++++..-++++. T Consensus 78 ~~~~~~~~l~~~~ 90 (166) T 1g2i_A 78 LNEKAVSIARKMF 90 (166) T ss_dssp TCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 6989999999997 Done!