Query T0606 ZP_02040151.1, Ruminococcus gnavus , 169 residues
Match_columns 169
No_of_seqs 5 out of 7
Neff 2.1
Searched_HMMs 15564
Date Mon Jul 5 08:51:07 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0606.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0606.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vr5a1 c.94.1.1 (A:23-557) Ol 92.7 0.38 2.4E-05 25.6 8.8 58 90-147 355-412 (535)
2 d1jeta_ c.94.1.1 (A:) Oligo-pe 87.3 0.95 6.1E-05 23.3 6.1 97 49-146 269-415 (517)
3 d1zlqa1 c.94.1.1 (A:3-501) Nic 87.0 0.77 4.9E-05 23.9 5.5 96 49-145 243-393 (499)
4 d1jjia_ c.69.1.2 (A:) Carboxyl 61.5 6.3 0.00041 18.7 4.4 41 88-129 243-283 (311)
5 d1dpea_ c.94.1.1 (A:) Dipeptid 61.3 3.8 0.00025 19.9 3.2 97 49-146 261-404 (507)
6 d1jkma_ c.69.1.2 (A:) Carboxyl 60.7 6.6 0.00042 18.6 4.7 41 88-129 284-324 (358)
7 d1u4na_ c.69.1.2 (A:) Carboxyl 48.9 10 0.00067 17.5 4.4 41 88-129 238-278 (308)
8 d1xoca1 c.94.1.1 (A:17-520) Ol 47.4 11 0.00071 17.4 6.7 57 89-145 343-401 (504)
9 d1lzla_ c.69.1.2 (A:) Heroin e 46.6 11 0.00073 17.3 4.7 40 89-129 248-287 (317)
10 d1uqwa_ c.94.1.1 (A:) Hypothet 45.5 12 0.00076 17.2 7.6 99 47-146 238-383 (487)
11 d1qe0a1 c.51.1.1 (A:326-420) H 41.6 14 0.00087 16.8 3.4 58 90-147 3-64 (95)
12 d1kl1a_ c.67.1.4 (A:) Serine h 36.5 5.2 0.00034 19.2 0.6 107 11-139 201-325 (405)
13 d1ffvc1 d.87.2.1 (C:178-287) C 35.3 6.1 0.00039 18.8 0.8 44 31-74 38-94 (110)
14 d1xt8a1 c.94.1.1 (A:10-257) Pu 32.6 19 0.0012 16.0 4.2 31 117-147 138-169 (248)
15 d1v95a_ c.51.1.1 (A:) Nuclear 28.1 23 0.0015 15.5 3.3 40 98-137 15-54 (130)
16 d2b4aa1 c.23.1.1 (A:2-119) Hyp 27.9 23 0.0015 15.5 4.9 28 93-123 4-31 (118)
17 d1kmma1 c.51.1.1 (A:326-424) H 26.9 24 0.0016 15.4 3.8 60 89-148 1-66 (99)
18 d1ztpa1 d.86.1.2 (A:17-250) Ba 26.4 10 0.00066 17.5 0.7 111 35-152 4-125 (234)
19 d1b7yb1 a.6.1.1 (B:1-38,B:152- 24.5 18 0.0012 16.1 1.7 39 107-162 18-57 (78)
20 d1wu7a1 c.51.1.1 (A:330-426) H 23.5 28 0.0018 15.0 3.7 55 93-147 5-63 (97)
No 1
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
Probab=92.68 E-value=0.38 Score=25.63 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=47.6
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 0368886126723778899999999744884143011222444432035124786133
Q T0606 90 LSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSES 147 (169)
Q Consensus 90 ~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~~ 147 (169)
+++.+.+....-.....+..+.+.|++.|++|++++.+..-+.++.-+|+||+++..-
T Consensus 355 l~~~i~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~d~~~~~w 412 (535)
T d1vr5a1 355 FKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNF 412 (535)
T ss_dssp CCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECCCHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCC
T ss_conf 4322336788678999999999998753445432210013433333121033564344
No 2
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA) {Salmonella typhimurium [TaxId: 90371]}
Probab=87.26 E-value=0.95 Score=23.34 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH--------------------------------------------
Q ss_conf 355157874123378882678999999851712330--------------------------------------------
Q T0606 49 LEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSI-------------------------------------------- 84 (169)
Q Consensus 49 LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~-------------------------------------------- 84 (169)
--+.+.+.+|....|++|.++|.-+--. .+++...
T Consensus 269 ~~~~~~~~~N~~~~~~~d~~vR~Ai~~a-idr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~l 347 (517)
T d1jeta_ 269 YLCTYYYEINNQKAPFNDVRVRTALKLA-LDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKL 347 (517)
T ss_dssp EEEEEEEEECTTSTTTTSHHHHHHHHHH-SCHHHHHHTTTCSSCEECSSSSCTTSTTCCCCCCHHHHSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 5311222024567866679999999987-888999999853355333321245777764332210122222479999999
Q ss_pred ------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC
Q ss_conf ------26664036888612672377889999999974488414301122244443203512478613
Q T0606 85 ------RTDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169)
Q Consensus 85 ------~~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169)
.....+.|++.+...+-....-+.-...-+++.|++|++++.....+..+.-+|+||+++..
T Consensus 348 L~eaG~~~g~~l~l~i~~~~~~~~~~~~~~~~~~~~~~iGi~v~~~~~~~~~~~~~~~~~~~d~~~~~ 415 (517)
T d1jeta_ 348 LAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAG 415 (517)
T ss_dssp HHHTTCCSSSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHTCCSEEEEE
T ss_pred HHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCHHEEEEC
T ss_conf 99737777996599999557755777899999999985697578874554776543205651102320
No 3
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]}
Probab=86.98 E-value=0.77 Score=23.89 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH--------------------------------------------
Q ss_conf 355157874123378882678999999851712330--------------------------------------------
Q T0606 49 LEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSI-------------------------------------------- 84 (169)
Q Consensus 49 LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~-------------------------------------------- 84 (169)
--+.+.+.+|....+++|.++|.-+.-+. ++++.+
T Consensus 243 ~~~~~~~~~N~~~~~~~d~~vR~Al~~ai-dr~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~ag 321 (499)
T d1zlqa1 243 PIETVMLALNTAKAPTNELAVREALNYAV-NKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEKAG 321 (499)
T ss_dssp EEEEEEEEECTTSTTTTSHHHHHHHHHHC-CHHHHHHHHSTTCSEECCSSSCTTSTTCCCCCCCCCCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 44543113567763212688899999766-40100100100012112354433455435666743221466655545554
Q ss_pred -----------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEEC
Q ss_conf -----------2666403688861267237788999999997448841430112224444320351247861
Q T0606 85 -----------RTDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLS 145 (169)
Q Consensus 85 -----------~~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla 145 (169)
.+...+++++.+..++-....-|..+++.|++.|++|++.+.+..-+.++..+|+||+.+.
T Consensus 322 ~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~a~~i~~~l~~~Gi~v~v~~~~~~~~~~~~~~g~~d~~~~ 393 (499)
T d1zlqa1 322 WTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFH 393 (499)
T ss_dssp CBCCTTCSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHTCCSEEEE
T ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCEEEEE
T ss_conf 323567764211122321001002234202778999875400455289999503146667764387116885
No 4
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=61.55 E-value=6.3 Score=18.70 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 640368886126723778899999999744884143011222
Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169)
Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169)
+.+..-+.+++.| +|..-+..+.++|+.+|.+|++..|.+.
T Consensus 243 ~~pP~li~~g~~D-~l~d~~~~~~~~L~~~Gv~v~~~~~~g~ 283 (311)
T d1jjia_ 243 NLPPALIITAEYD-PLRDEGEVFGQMLRRAGVEASIVRYRGV 283 (311)
T ss_dssp TCCCEEEEEEEEC-TTHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 5788799982888-7758999999999987997899997999
No 5
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli [TaxId: 562]}
Probab=61.32 E-value=3.8 Score=19.94 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCC----C-------------------------------------
Q ss_conf 35515787412337888267899999985171233026----6-------------------------------------
Q T0606 49 LEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRT----D------------------------------------- 87 (169)
Q Consensus 49 LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~~----~------------------------------------- 87 (169)
--+.+.+.+|....+++|.++|.-|... .+++..... .
T Consensus 261 ~~~~~~~~~N~~~~~~~d~~vR~Al~~a-idr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~kA~~ll~~aG 339 (507)
T d1dpea_ 261 GLNVGYLSYNVQKKPLDDVKVRQALTYA-VNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAG 339 (507)
T ss_dssp CSEEEEEEECTTSTTTTSHHHHHHHHHT-SCHHHHHHHHHTTSEEECSSSSCTTSTTCCTTCCCCCCCHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE
T ss_conf 6402210334578888999999999998-765666788738976665454498523557653322323777531232100
Q ss_pred --CCCEEEEEEECCC----CHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECC
Q ss_conf --6403688861267----2377889999999974488414301122244443203512478613
Q T0606 88 --TELSFDIYVSETD----YALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSE 146 (169)
Q Consensus 88 --~~~~~~l~vsetd----y~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~ 146 (169)
.....++..-... -....-+..+++.|+++|++|++.+.....+..+..+|+||.++..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~iGi~v~~~~~~~~~~~~~~~~~~~d~~~~~ 404 (507)
T d1dpea_ 340 LEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMG 404 (507)
T ss_dssp CTTCEEEEEECCSSCBTTBSCHHHHHHHHHHHHHTTTEEEEEECCCHHHHHHHHHTTCCSEEEEE
T ss_pred ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf 11487520243012235777899999987776643032202440451466666544210333333
No 6
>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]}
Probab=60.69 E-value=6.6 Score=18.61 Aligned_cols=41 Identities=29% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 640368886126723778899999999744884143011222
Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169)
Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169)
+.+..-+.++|.| +|..-+..+.++|+++|.+|++..|.+.
T Consensus 284 ~lPp~li~~g~~D-~l~~e~~~~~~~L~~aGv~v~~~~~~g~ 324 (358)
T d1jkma_ 284 GLPPFVVAVNELD-PLRDEGIAFARRLARAGVDVAARVNIGL 324 (358)
T ss_dssp TCCCEEEEEETTC-TTHHHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8999899987887-7879999999999987995899997989
No 7
>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=48.90 E-value=10 Score=17.49 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 640368886126723778899999999744884143011222
Q T0606 88 TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169)
Q Consensus 88 ~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169)
+.+.+-+.+++.| ++..-+..+.++|+.+|..|++..|.+.
T Consensus 238 ~~Pp~li~~g~~D-~l~~~~~~~~~~L~~~G~~v~~~~~~g~ 278 (308)
T d1u4na_ 238 GLPPAYIATAQYD-PLRDVGKLYAEALNKAGVKVEIENFEDL 278 (308)
T ss_dssp TCCCEEEEEEEEC-TTHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 7997037844867-7668999999999988998899997989
No 8
>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA) {Bacillus subtilis [TaxId: 1423]}
Probab=47.39 E-value=11 Score=17.35 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=43.8
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEE--EEEC
Q ss_conf 40368886126723778899999999744884143011222444432035124--7861
Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYE--AFLS 145 (169)
Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd--~fla 145 (169)
.+.+++.+...+-....-|..+.+.|++.|++|++++.....+.++...|+++ ++..
T Consensus 343 ~l~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (504)
T d1xoca1 343 KFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVM 401 (504)
T ss_dssp ECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHSTTTCCCSEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 53289982788614899999999999973997322023137889887642124342223
No 9
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]}
Probab=46.63 E-value=11 Score=17.28 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=34.0
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 40368886126723778899999999744884143011222
Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT 129 (169)
Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t 129 (169)
.+..-+.++|.| +|..-+.+++++|+.+|..|++..|.+.
T Consensus 248 ~pp~li~~g~~D-~l~~~~~~~~~~L~~~G~~v~~~~~~g~ 287 (317)
T d1lzla_ 248 LPPTYLSTMELD-PLRDEGIEYALRLLQAGVSVELHSFPGT 287 (317)
T ss_dssp CCCEEEEEETTC-TTHHHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred CCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 997599977877-8879999999999987998899997939
No 10
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli [TaxId: 562]}
Probab=45.45 E-value=12 Score=17.18 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHC---------------------------------------CC
Q ss_conf 023551578741233788826789999998517123302---------------------------------------66
Q T0606 47 AQLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIR---------------------------------------TD 87 (169)
Q Consensus 47 a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~---------------------------------------~~ 87 (169)
.+-.+.+.+.+|....|++|.++|.-+.... ++.+.+. ..
T Consensus 238 ~~~~~~~~~~~n~~~~~~~d~~~R~Al~~ai-dr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ak~ll~~a 316 (487)
T d1uqwa_ 238 SPSIMQRYISMNVTQKPFDNPKVREALNYAI-NRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEA 316 (487)
T ss_dssp EEEEEEEEEEECTTSTGGGSHHHHHHHHHHC-CHHHHHHHHHTTCEEECSSSSCTTSBTCCCCCCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 7731000023354567668999989999753-204556553156765531222564234566788888999999999853
Q ss_pred ---CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHH-----CCCEEEEECC
Q ss_conf ---6403688861267237788999999997448841430112224444320-----3512478613
Q T0606 88 ---TELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAV-----SGKYEAFLSE 146 (169)
Q Consensus 88 ---~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSrav-----sGkYd~fla~ 146 (169)
....+.+.+...+-....-|..+++-|+++|.+|++++....-+.++.. .+.|+.+...
T Consensus 317 g~~~g~~~~~~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 383 (487)
T d1uqwa_ 317 GYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTG 383 (487)
T ss_dssp TCTTCEEEEEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHTTSCCTTTCCCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCHHEEEEE
T ss_conf 2122222222222222106789999999986364304899816899999997314542130101320
No 11
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=41.57 E-value=14 Score=16.84 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=38.6
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHH----HHHHHHCCCEEEEECCC
Q ss_conf 03688861267237788999999997448841430112224----44432035124786133
Q T0606 90 LSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTM----LRSRAVSGKYEAFLSES 147 (169)
Q Consensus 90 ~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tM----lrSravsGkYd~fla~~ 147 (169)
-++++|++--+-....||-.++..|..+|+.|.+-.-...+ -...-..-+|-+++.++
T Consensus 3 ~~~dv~ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~~~~~~~iiiG~~ 64 (95)
T d1qe0a1 3 ENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQ 64 (95)
T ss_dssp CCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCSEEEEECHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 78849999948789999999999999879918832778998999999875489999997651
No 12
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.46 E-value=5.2 Score=19.18 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH-CCCHHH------
Q ss_conf 9999987546542762355321046700233432100235515787412337888267899999985-171233------
Q T0606 11 VIALIAGFGALLHSPPSIIDAVTGATPKAKKAAQSSAQLEGSYIFCMNPLLDKLSDEDIREQLKAFV-TGKTDS------ 83 (169)
Q Consensus 11 ti~~lagfG~~~hSpps~iDaltgAt~kAkkAaq~~a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a-~g~t~~------ 83 (169)
+.||||| |+ +.||-.--|-+|+-|-|.=|..|+ -.+|+ ++++.+++...+ -|-|..
T Consensus 201 ~~GLIa~-g~-~~~P~~~aDvvt~tThKtlrGPrg------g~I~~---------~~~~~~~i~~avfPg~qggp~~~~i 263 (405)
T d1kl1a_ 201 IAGLVAA-GL-HPNPVPYAHFVTTTTHKTLRGPRG------GMILC---------QEQFAKQIDKAIFPGIQGGPLMHVI 263 (405)
T ss_dssp THHHHHT-TS-SCCSTTTCSEEEEESSSTTCCCSC------EEEEE---------CHHHHHHHHHHHTTTTCSSCCHHHH
T ss_pred HHHHHHH-HH-CCCHHHHHHHEECCCCCCCCCCCC------CEEEE---------CCHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 7665443-12-698465211032335533467777------35875---------0035777776508653468415678
Q ss_pred ------HCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHH-----HHHHHHCCC
Q ss_conf ------02666403688861267237788999999997448841430112224-----444320351
Q T0606 84 ------IRTDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTM-----LRSRAVSGK 139 (169)
Q Consensus 84 ------~~~~~~~~~~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tM-----lrSravsGk 139 (169)
+...-.+.|.-|. ...+-.|+.|++.|..-|++|- .-+.++. +++.-++|+
T Consensus 264 Aa~Aval~Ea~~~~fk~Ya----~qvv~NAkaLa~~L~~~G~~vv-~ggTd~H~vlvdl~~~~~~g~ 325 (405)
T d1kl1a_ 264 AAKAVAFGEALQDDFKAYA----KRVVDNAKRLASALQNEGFTLV-SGGTDNHLLLVDLRPQQLTGK 325 (405)
T ss_dssp HHHHHHHHHHHSHHHHHHH----HHHHHHHHHHHHHHHHTTCEEG-GGSCSSSEEEEECGGGTCCHH
T ss_pred HHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHHHCCCCEEE-CCCCCCCEEECCCCCCCCCHH
T ss_conf 8999999987383889999----9999988899999864894343-588766456324344677499
No 13
>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=35.29 E-value=6.1 Score=18.79 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=25.9
Q ss_pred HHCCCCCHHHHHHHHHCCCCCCEE-------------EEECCCCCCCCHHHHHHHHH
Q ss_conf 210467002334321002355157-------------87412337888267899999
Q T0606 31 AVTGATPKAKKAAQSSAQLEGSYI-------------FCMNPLLDKLSDEDIREQLK 74 (169)
Q Consensus 31 altgAt~kAkkAaq~~a~LeG~Yl-------------l~iNp~ld~~~~~~~R~~Lk 74 (169)
++.|..|+..++.+.++-|.|.=+ -.++|..|+++..+.|.+|-
T Consensus 38 a~ggv~~~P~r~~~~e~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~r~s~~YR~~l~ 94 (110)
T d1ffvc1 38 ALTNVAPTALRAEAAEAALLGKAFTKEAVQAAADAAIAICEPAEDLRGDADYKTAMA 94 (110)
T ss_dssp EEESSSSSCEECHHHHHTTBTSBCCHHHHHHHHHHHHHTCCCCCBTTBCHHHHHHHH
T ss_pred EEECCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 985368756760444433037766668999999999840797556798999999999
No 14
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}
Probab=32.60 E-value=19 Score=15.99 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=17.3
Q ss_pred CCCCEEECCCCCHH-HHHHHHCCCEEEEECCC
Q ss_conf 48841430112224-44432035124786133
Q T0606 117 AGADVQIKQYSGTM-LRSRAVSGKYEAFLSES 147 (169)
Q Consensus 117 AG~~V~lk~yS~tM-lrSravsGkYd~fla~~ 147 (169)
..-++++..|...- +.....+||.|+++...
T Consensus 138 ~~~~~~i~~~~s~~~~~~~l~~g~vD~~i~~~ 169 (248)
T d1xt8a1 138 NYPNIKTLKYDQNTETFAALMDKRGDALSHDN 169 (248)
T ss_dssp HCTTSEEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCH
T ss_conf 12232222222115677763002333221549
No 15
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.10 E-value=23 Score=15.55 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHC
Q ss_conf 2672377889999999974488414301122244443203
Q T0606 98 ETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVS 137 (169)
Q Consensus 98 etdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravs 137 (169)
-..+-+..||..+-.||+.-|..|++---.+--+++||+.
T Consensus 15 vvnk~~~~YAe~Ie~rL~~~Gl~vd~lf~n~dv~l~~aL~ 54 (130)
T d1v95a_ 15 VVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALE 54 (130)
T ss_dssp ESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 9877544378999999986497788983587554999999
No 16
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=27.89 E-value=23 Score=15.52 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=10.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8886126723778899999999744884143
Q T0606 93 DIYVSETDYALIRYADSLCERLNDAGADVQI 123 (169)
Q Consensus 93 ~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~l 123 (169)
++.|-|+|-.+ ++.+++.|...|+.|..
T Consensus 4 rILvVdDd~~~---~~~l~~~L~~~g~~v~~ 31 (118)
T d2b4aa1 4 RVTLVEDEPSH---ATLIQYHLNQLGAEVTV 31 (118)
T ss_dssp EEEEECSCHHH---HHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCCEEE
T ss_conf 79999898999---99999999962997299
No 17
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.89 E-value=24 Score=15.42 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=41.0
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCCEEECCCCCHH----HHHHHHCCCEEEEECCCC
Q ss_conf 40368886126723778899999999744--8841430112224----444320351247861330
Q T0606 89 ELSFDIYVSETDYALIRYADSLCERLNDA--GADVQIKQYSGTM----LRSRAVSGKYEAFLSESD 148 (169)
Q Consensus 89 ~~~~~l~vsetdy~L~~YA~~Lc~RL~~A--G~~V~lk~yS~tM----lrSravsGkYd~fla~~~ 148 (169)
|+..++|++--+--...||-.+++.|-.+ |+.|.+..-+..| -...-..-+|-+++-++.
T Consensus 1 ep~vdv~vi~~~~~~~~~a~~la~~LR~~~~gi~v~~~~~~~~l~kq~k~A~~~~~~~~iiiG~~E 66 (99)
T d1kmma1 1 DPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESE 66 (99)
T ss_dssp CCSCSEEEECCSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSEEEECCHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCHH
T ss_conf 998879999778799999999999998449982999968998787999999784787442118111
No 18
>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.39 E-value=10 Score=17.51 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCC----EEEEEEECCCC-------HH
Q ss_conf 67002334321002355157874123378882678999999851712330266640----36888612672-------37
Q T0606 35 ATPKAKKAAQSSAQLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRTDTEL----SFDIYVSETDY-------AL 103 (169)
Q Consensus 35 At~kAkkAaq~~a~LeG~Yll~iNp~ld~~~~~~~R~~Lka~a~g~t~~~~~~~~~----~~~l~vsetdy-------~L 103 (169)
-|+..--|-.+++.++-.+.|- | .+-.++++-.=|..+--.++.+..+..++ ---|||-...| +-
T Consensus 4 ~~a~~~aae~maad~dpwi~~~-~---r~~p~~~~~~fL~~~pPS~v~~~g~~~~~~~~~v~WI~V~~~~~~p~~~d~~~ 79 (234)
T d1ztpa1 4 FTAEHLAAEAMAADMDPWLVFD-A---RTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQG 79 (234)
T ss_dssp GSHHHHHHHTCCSCCSCCEEEE-T---TTSCGGGHHHHHHHSCTTTSBTTCCTTSSCSSCCSCEEEECTTCCCCCCCHHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEC-C---CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 4575643456541258636634-7---77870356789985798533357877787777622899538988988303889
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECCCCEEEH
Q ss_conf 7889999999974488414301122244443203512478613301202
Q T0606 104 IRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSESDLVST 152 (169)
Q Consensus 104 ~~YA~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~~~~i~~ 152 (169)
++ .--++|...|-.+....--..-.--++++||.-+|+.|.+-+|.
T Consensus 80 L~---~a~e~l~~~gRk~t~~~l~~LA~~~~v~sGKWmif~~p~d~VD~ 125 (234)
T d1ztpa1 80 LQ---AAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDH 125 (234)
T ss_dssp HH---HHHHHHHHHCCCCCHHHHHHHHHHHTCCCEEEEEEECSSHHHHH
T ss_pred HH---HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHH
T ss_conf 99---99999986356463889999999829313036874283678999
No 19
>d1b7yb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=24.52 E-value=18 Score=16.13 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCEEEEECCCCEEEHHHHHH-HHHHE
Q ss_conf 999999997448841430112224444320351247861330120211300-00101
Q T0606 107 ADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSESDLVSTDALEN-ADYII 162 (169)
Q Consensus 107 A~~Lc~RL~~AG~~V~lk~yS~tMlrSravsGkYd~fla~~~~i~~t~l~~-~D~li 162 (169)
...||++|+++|+.|.--+- +..+..|+..--|| .|.+-
T Consensus 18 ~eel~~~Lt~~G~EvE~i~~-----------------~~~D~iieie~tPNR~D~Ls 57 (78)
T d1b7yb1 18 PEVLEERLAGLGFETDRIER-----------------VXEEVVLDLEVTPNRPDALG 57 (78)
T ss_dssp HHHHHHHHHHHTCCCCEEEE-----------------C-CCEEEECCCCTTCGGGGS
T ss_pred HHHHHHHHHHCCCCCCHHHH-----------------HHHHHHEECCCCCCHHHHHH
T ss_conf 87899888635872100000-----------------00012010137887346775
No 20
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=23.47 E-value=28 Score=15.05 Aligned_cols=55 Identities=11% Similarity=0.294 Sum_probs=38.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH----HHHHHHHCCCEEEEECCC
Q ss_conf 8886126723778899999999744884143011222----444432035124786133
Q T0606 93 DIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGT----MLRSRAVSGKYEAFLSES 147 (169)
Q Consensus 93 ~l~vsetdy~L~~YA~~Lc~RL~~AG~~V~lk~yS~t----MlrSravsGkYd~fla~~ 147 (169)
.+|++--+.....||-.+++.|..+|+.|.+-.-... |-......-+|-+++-++
T Consensus 5 ~V~i~~~g~~~~~~~~~l~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~~~~~~~iiiG~~ 63 (97)
T d1wu7a1 5 SVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGER 63 (97)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 39999908799999999999999889989998788827899999974179758841773
Done!