Query         T0607 YP_094844.1, LEGIONELLA PNEUMOPHILA , 471 residues
Match_columns 471
No_of_seqs    126 out of 5489
Neff          10.4
Searched_HMMs 22458
Date          Mon Jul  5 09:28:42 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0607.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0607.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2zog_A Cytosolic non-specific  100.0       0       0  449.5  42.4  456    2-471     6-478 (479)
  2 2pok_A Peptidase, M20/M25/M40  100.0       0       0  438.7  44.4  444    5-467    32-480 (481)
  3 3dlj_A Beta-Ala-His dipeptidas 100.0       0       0  422.2  45.3  454    5-470    14-484 (485)
  4 1cg2_A Carboxypeptidase G2; me 100.0       0       0  376.7  33.8  381    5-471     8-393 (393)
  5 1vgy_A Succinyl-diaminopimelat 100.0       0       0  352.9  36.3  374   16-470     5-380 (393)
  6 2qyv_A XAA-His dipeptidase; YP 100.0       0       0  352.4  34.2  420   19-470    13-487 (487)
  7 1lfw_A PEPV; hydrolase, dipept 100.0       0       0  342.2  37.6  422    8-470     6-467 (470)
  8 2f7v_A Aectylcitrulline deacet 100.0       0       0  351.6  28.2  362   14-467     6-368 (369)
  9 3isz_A Succinyl-diaminopimelat 100.0       0       0  328.3  40.9  373   16-469     2-376 (377)
 10 1fno_A Peptidase T; metallo pe 100.0       0       0  340.0  29.5  370   17-470     2-407 (417)
 11 2rb7_A Peptidase, M20/M25/M40  100.0       0       0  317.5  32.7  352   14-470     3-361 (364)
 12 3gb0_A Peptidase T; NP_980509. 100.0       0       0  319.2  31.3  359   15-469     4-373 (373)
 13 3ife_A Peptidase T; metallopep 100.0       0       0  317.7  31.9  383    3-470    14-433 (434)
 14 3ct9_A Acetylornithine deacety 100.0       0       0  317.7  30.3  346   12-467     6-354 (356)
 15 1ysj_A Protein YXEP; M20 famil 100.0 2.6E-37 1.2E-41  247.7  26.7  369   13-469    28-401 (404)
 16 3io1_A Aminobenzoyl-glutamate  100.0 4.1E-35 1.8E-39  234.1  27.0  382    5-471     3-435 (445)
 17 1z2l_A Allantoate amidohydrola 100.0 2.2E-36 9.7E-41  242.0  20.1  383   13-471     5-413 (423)
 18 2v8h_A Beta-alanine synthase;  100.0 9.4E-35 4.2E-39  231.9  26.8  361   16-471    31-449 (474)
 19 1q7l_A Aminoacylase-1; catalys 100.0 1.2E-35 5.5E-40  237.3  16.8  186   14-213     7-198 (198)
 20 1xmb_A IAA-amino acid hydrolas 100.0 4.2E-28 1.9E-32  190.6  29.5  368   16-471    27-405 (418)
 21 1vhe_A Aminopeptidase/glucanas 100.0 1.2E-31 5.3E-36  212.6   5.9  349   16-471     6-356 (373)
 22 1ylo_A Hypothetical protein SF 100.0 2.6E-30 1.2E-34  204.3  12.2  334   20-471     6-340 (348)
 23 1y0y_A FRV operon protein FRVX 100.0 1.8E-30 7.9E-35  205.4   6.9  342   20-471     9-352 (353)
 24 2gre_A Deblocking aminopeptida 100.0 1.4E-29 6.4E-34  199.7   9.8  341   13-466     2-344 (349)
 25 3isx_A Endoglucanase; TM1050,  100.0 6.9E-30 3.1E-34  201.7   7.8  335    8-465     3-342 (343)
 26 3kl9_A PEPA, glutamyl aminopep 100.0 8.4E-30 3.8E-34  201.2   6.7  342   17-470     3-347 (355)
 27 1vho_A Endoglucanase; structur 100.0 1.5E-29 6.5E-34  199.7   7.6  334   16-471     4-338 (346)
 28 3cpx_A Aminopeptidase, M42 fam  99.9 2.3E-28   1E-32  192.3   2.8  314    6-467     7-321 (321)
 29 2fvg_A Endoglucanase; TM1049,   99.9 6.4E-28 2.8E-32  189.6   2.7  327   22-466     3-332 (340)
 30 2cf4_A Protein PH0519, phtet1-  99.9 8.3E-29 3.7E-33  195.0  -4.8  330   18-467     3-332 (332)
 31 2vpu_A TET3, 354AA long hypoth  99.9 6.3E-26 2.8E-30  177.2   6.5  335   20-469    12-349 (354)
 32 1rtq_A Bacterial leucyl aminop  99.7 1.7E-14 7.4E-19  106.4  19.4  168    3-190     6-179 (299)
 33 1tkj_A Aminopeptidase, SGAP; d  99.7 4.3E-15 1.9E-19  110.0  14.9  135   18-178     8-147 (284)
 34 3gux_A Putative Zn-dependent e  99.4 1.1E-11 4.7E-16   89.0  16.5  136   17-169    27-168 (314)
 35 2afw_A Glutaminyl-peptide cycl  99.4 5.5E-11 2.5E-15   84.6  16.2  126   39-179    45-194 (329)
 36 1q7l_B Aminoacylase-1; catalys  99.0 1.6E-09 7.1E-14   75.5  10.1   80  386-470     1-81  (88)
 37 3iib_A Peptidase M28; YP_92679  98.9 1.3E-08   6E-13   69.8  11.0   54  415-470   375-433 (444)
 38 2ek8_A Aminopeptidase; metallo  98.6 7.5E-07 3.4E-11   59.0  10.8   80  386-470   320-402 (421)
 39 3kas_A Transferrin receptor pr  98.5 1.1E-06 5.1E-11   57.9  11.0   93   77-192   267-367 (640)
 40 3fed_A Glutamate carboxypeptid  98.5   9E-07   4E-11   58.5  10.4   53  125-177   340-396 (707)
 41 2glf_A Probable M18-family ami  97.0  0.0041 1.8E-07   35.8   8.5   81  381-467   364-450 (450)
 42 3l6s_A Aspartyl aminopeptidase  96.9   0.004 1.8E-07   35.9   7.8   80  386-469   394-477 (485)
 43 1y7e_A Probable M18-family ami  96.2   0.022 9.6E-07   31.4   8.1   75  385-464   377-456 (458)
 44 2ijz_A Probable M18-family ami  95.8  0.0028 1.3E-07   36.8   2.0   77  386-466   344-424 (428)
 45 2glj_A Probable M18-family ami  95.6   0.016 7.1E-07   32.2   5.1   75  384-464   379-459 (461)
 46 3k9t_A Putative peptidase; str  72.7     3.3 0.00015   17.8  11.3   55  415-469   297-355 (435)
 47 1qys_A TOP7; alpha-beta, novel  67.3     4.3 0.00019   17.1   6.1   70  330-407    12-81  (106)
 48 2jvf_A De novo protein M7; tet  63.6     5.1 0.00023   16.7   6.2   70  330-407    14-83  (96)
 49 1gxg_A Colicin E8 immunity pro  43.9      11 0.00047   14.7   4.0   60    5-66     16-83  (85)
 50 1unk_A Colicin E7; immunity pr  42.1      11  0.0005   14.5   5.7   52   13-66     31-85  (87)
 51 3kzw_A Cytosol aminopeptidase;  37.8      13 0.00059   14.1   4.8   31  131-162   307-337 (515)
 52 3cr3_A PTS-dependent dihydroxy  28.9      19 0.00082   13.2   4.5   37    1-38      1-37  (192)
 53 1gyt_A Cytosol aminopeptidase;  24.6      22 0.00099   12.7   6.2   16  455-470   484-499 (503)
 54 2no8_A Colicin-E2 immunity pro  21.9      25  0.0011   12.4   5.4   50   15-66     32-84  (86)

No 1  
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP dipeptidase 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=100.00  E-value=0  Score=449.45  Aligned_cols=456  Identities=24%  Similarity=0.288  Sum_probs=359.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--------
Q ss_conf             888999999999889999999999961789798866666665479999999999999835488417897538--------
Q T0607             2 FKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK--------   73 (471)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~--------   73 (471)
                      ..-+++.+|| ++++|++|++|++||+|||+|++++.    .+.+.++++++.++|+++   |+++++++..        
T Consensus         6 ~~~~~i~~~i-~~~~d~~v~~L~~lv~ipSvs~~~~~----~~~~~~~~~~l~~~l~~~---Gf~~~~~~~~~~~~~~~~   77 (479)
T 2zog_A            6 SALKAVFQYI-DENQDRYVKKLAEWVAIQSVSAWPEK----RGEIRRMMEVAAADVQRL---GGSVELVDIGKQKLPDGS   77 (479)
T ss_dssp             HHHHHHHHHH-HHTHHHHHHHHHHHHHSCCBTTCGGG----HHHHHHHHHHHHHHHHHT---TCEEEEECCCEEECTTSC
T ss_pred             HHHHHHHHHH-HHCHHHHHHHHHHHHCCCCCCCCCCC----CHHHHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCC
T ss_conf             6899999999-97899999999999778985949765----579999999999999976---995999945774566666


Q ss_pred             --CCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             --992489998737-99887999734032328877677888635433454213564222420358999998876314787
Q T0607            74 --NRTPLLFMEIPG-QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLP  150 (471)
Q Consensus        74 --~~~~~v~~~~~g-~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~  150 (471)
                        .+++||++++++ +++|+|+|++|+||||+++.+.|+++||++.++||++||||+.|||++++++++|++++++.+..
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~ill~gH~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRGs~D~Kg~~aa~l~Al~~l~~~~~~  157 (479)
T 2zog_A           78 EIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQE  157 (479)
T ss_dssp             EEECCCEEEEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             67887589999678999898999736440089886545679963376399798446334662089999999987642137


Q ss_pred             C-CCEEEEEECCCCCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             7-73689981564336446999999977-642896089976877768776558885102368888986447763445677
Q T0607           151 Y-PRCILIIEACEESGSYDLPFYIELLK-ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSAS  228 (471)
Q Consensus       151 ~-~~~~~~~~~~EE~G~~g~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~  228 (471)
                      + .+++++++.+||.|+.++..++.... ......++++..+++......+.+.+|+||..+++++++|...+.|+...+
T Consensus       158 ~~~~i~l~~~~dEE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~l~v~g~~~~~~~~~~g  237 (479)
T 2zog_A          158 IPVNLRFCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYG  237 (479)
T ss_dssp             CSSEEEEEEESCGGGTCTTHHHHHHHTTTTTTTTCCEEEECCCBCSSSSSCEEEEEECEEEEEEEEEECCSSCEEHHHHT
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             89508998424203134557999999888631455401111454456888641003763026788632667653466678


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHH
Q ss_conf             414789999999999974002450213310144430008999999863345556542111001232001-0123333221
Q T0607           229 GIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQD-KQQLILNRTW  307 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  307 (471)
                      +...+++..+.+....+.+.. ......+++...................  ....+............ ..........
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (479)
T 2zog_A          238 GSVHEAMTDLISLMGCLVDKK-GKILIPGINDAVAPVTDEEHALYDHIDF--DMEEFAKDVGAETLLHSCKKDILMHRWR  314 (479)
T ss_dssp             TTSCCHHHHHHHHHTTSBCTT-SCBCSTTTTTTSCCCCHHHHHHTSSCCC--CHHHHHHHHTCSSCSCSSHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCHHCCCHHHHHHHHHHHCCC--CHHHHHHHCCCCCCCCCCCCCHHHHHCC
T ss_conf             634468999999876303757-8604532000001036999987764145--6888755327642136666323554114


Q ss_pred             HEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCCCCCCCC
Q ss_conf             001201302100057851303547489999751278788899999999999973236---63389998315767766899
Q T0607           308 RPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY---NAKVDFKIQNGGSKGWNAPL  384 (471)
Q Consensus       308 ~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~  384 (471)
                      .++.++.++.++..++++.||||++|++.+|+|++++.+.+++.+.+++.+.+....   .....+++.. ..+|+..+.
T Consensus       315 ~~~~~~~~i~~~~~~~~~~nvip~~~~~~~d~R~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~v~~~~-~~~p~~~~~  393 (479)
T 2zog_A          315 YPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGH-GGKPWVSDF  393 (479)
T ss_dssp             SCEEEEEEEESSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEE-EECCEECCT
T ss_pred             CCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCEECCC
T ss_conf             5542224331454587743124420688522324889999999999999999751111688617999767-887131699


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             88899999999999836976523442776556899998618998999687786667567776004899999999999999
Q T0607           385 LSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVL  464 (471)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l  464 (471)
                      +++++ +.+.+++++++|.++.....|||.+.++.|.+. .++|++.+|+|..++++|++|||++++++.+++++|+.+|
T Consensus       394 ~~~~v-~~l~~a~~~~~G~~p~~~~~GGs~p~~~~f~~~-~g~~~v~~g~g~~~~~aH~~nE~i~i~~l~~~~~i~~~~l  471 (479)
T 2zog_A          394 NHPHY-QAGRRALKTVFGVEPDLTREGGSIPVTLTFQEA-TGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYL  471 (479)
T ss_dssp             TSHHH-HHHHHHHHHHHSSCCEEEEESSCCTHHHHHHHH-HCSEEEECCCBCTTCCTTSTTCEEEHHHHHHHHHHHHHHH
T ss_pred             CCHHH-HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH
T ss_conf             99999-999999999879996476778773679999987-4949999778887679688556178999999999999999


Q ss_pred             HHHHHCC
Q ss_conf             9997139
Q T0607           465 YSFSQKK  471 (471)
Q Consensus       465 ~~la~~~  471 (471)
                      .+|++.|
T Consensus       472 ~~l~~l~  478 (479)
T 2zog_A          472 YEVSQLK  478 (479)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHH
T ss_conf             9998623


No 2  
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural genomics, PSI-2; HET: BGC; 1.90A {Streptococcus pneumoniae TIGR4}
Probab=100.00  E-value=0  Score=438.69  Aligned_cols=444  Identities=18%  Similarity=0.243  Sum_probs=355.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf             99999999988999999999996178979886666666547999999999999983548841789753899248999873
Q T0607             5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIP   84 (471)
Q Consensus         5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~   84 (471)
                      +++.+|..|+.++++|++|++||+|||+|++..       .++++++||++||+++   |+++++.+. ++++||+++++
T Consensus        32 ~~~~~~~~~~~~~~~l~~L~~lv~i~Svs~~~~-------g~~~~a~~l~~~l~~~---G~~~~i~e~-~~~~nvia~~~  100 (481)
T 2pok_A           32 EQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQV-------GLKEVANYLGEIFKRV---GAEVEIDES-YTAPFVMAHFK  100 (481)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHSCCCGGGCT-------THHHHHHHHHHHHHHT---TCEEEEECS-SSSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHHHHHHHHC---CCEEEEEEC-CCCCEEEEEEC
T ss_conf             999986655779999999999967999796703-------5999999999999977---997999966-99988999967


Q ss_pred             CC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECC
Q ss_conf             79--98879997340323288776778886354334542135642224203589999988763147877-7368998156
Q T0607            85 GQ--IDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEAC  161 (471)
Q Consensus        85 g~--~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~  161 (471)
                      ++  ++|+|+|++|+||||+++.+.|+++||+++++||++||||++|||++++++++|++.+++.+..+ .+++++++.+
T Consensus       101 g~~~~~~~lll~gH~DvVp~~~~~~W~~~PF~~~i~dg~lyGRGt~D~Kg~~aa~l~A~~~l~~~~~~~~~~i~~~~~~d  180 (481)
T 2pok_A          101 SSRPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGA  180 (481)
T ss_dssp             CSSTTCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESC
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             88999998999867278289997556579943799899999664665246699999999999864157897358852025


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             43364469999999776428960899768777687765588851023688889864477634456774147899999999
Q T0607           162 EESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQL  241 (471)
Q Consensus       162 EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~  241 (471)
                      ||.|+.++..+++...+.+...++++..+++......+.+.++.+|..++.+++.+...+.|+.. ++.+.|++..+..+
T Consensus       181 EE~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~  259 (481)
T 2pok_A          181 EESASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEISGGNKGIVTFDAKVKSADVDIHSSY-GGVVESAPWYLLQA  259 (481)
T ss_dssp             GGGTTTTHHHHHHHHHHHHTTCSEEECSCCBBCTTSCEEEECCBCEEEEEEEEEECSSSCEEGGG-TTTBCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCEECCCCCC-CCCCCCHHHHHHHH
T ss_conf             33112321233333331234663355404666655542133035553011223330122044556-76665428899999


Q ss_pred             HHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHEEEECCEEEEEC
Q ss_conf             999740024502133101444300089999998633455565421110012320-0101233332210012013021000
Q T0607           242 ISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVI-QDKQQLILNRTWRPALTVTGADGFP  320 (471)
Q Consensus       242 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~v~~i~~~~  320 (471)
                      ...+.... ....+++++..+................................. ........+....+|.+++.|.++.
T Consensus       260 ~~~l~~~~-~~~~i~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~I~gg~  338 (481)
T 2pok_A          260 LQSLRAAD-GRILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGY  338 (481)
T ss_dssp             HHHTBCTT-SCBCCTTTGGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTCCSCCSSCSHHHHHHHHHHSCEEEEEEEEEEC
T ss_pred             HHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCC
T ss_conf             99754310-24344454655567017899999763105998874540553333334332313430367640367664221


Q ss_pred             CCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             57851303547489999751278788899999999999973236633899983157677668998889999999999983
Q T0607           321 AIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY  400 (471)
Q Consensus       321 ~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  400 (471)
                      ..+++.||||++|++++|+|++|..+.+++.+.+++.+++.......  ++... ..+|+.++.+++++. .+.+++++.
T Consensus       339 ~~~~~~nviP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~~~~v~--i~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~  414 (481)
T 2pok_A          339 QGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVE--LYYTL-GEMSYRSDMSAPAIL-NVIELAKKF  414 (481)
T ss_dssp             CSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHTTCTTEE--EEEEE-EECCBCCCSCSHHHH-HHHHHHTTT
T ss_pred             CCCCCCEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE--EEEEC-CCCCCCCCCCCHHHH-HHHHHHHHH
T ss_conf             22201334352489999998589999999999999999863899689--99934-787667899999999-999999998


Q ss_pred             CCCCC-CEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             69765-23442776556899998618998999687786667567776004899999999999999999
Q T0607           401 YDKPA-AYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF  467 (471)
Q Consensus       401 ~~~~~-~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l  467 (471)
                      ++.++ ..++.|||.++..+|..  .++|++.+|||..++++|++|||++++++.+++++|.++|.+|
T Consensus       415 ~g~~~~~~~~~gGt~~~~~~~~~--~gip~v~~Gpg~~~~~aH~~nE~V~i~~l~~~~~~~~~li~~y  480 (481)
T 2pok_A          415 YPQGVSVLPTTAGTGPMHTVFDA--LEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRSY  480 (481)
T ss_dssp             CTTCEEEESCBSSCCTHHHHHHH--HCCCEEBCCSBCTTCCTTSTTCEEEHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCCCEEECCCCCCHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf             58997156105445278999987--5999999898871238378657289999999999999999953


No 3  
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structural genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=100.00  E-value=0  Score=422.24  Aligned_cols=454  Identities=20%  Similarity=0.252  Sum_probs=362.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----------C
Q ss_conf             999999999889999999999961789798866666665479999999999999835488417897538----------9
Q T0607             5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK----------N   74 (471)
Q Consensus         5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~----------~   74 (471)
                      |++++|| |+++|+++++|++||+|||+|+++.+  +..+.+.++++++.+||+++   |+++++++..          .
T Consensus        14 ~~~~~~i-d~~~~~~v~~L~~lv~ips~s~~~~~--~~~~~~~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~~~~~   87 (485)
T 3dlj_A           14 EKVFQYI-DLHQDEFVQTLKEWVAIESDSVQPVP--RFRQELFRMMAVAADTLQRL---GARVASVDMGPQQLPDGQSLP   87 (485)
T ss_dssp             HHHHHHH-HHTHHHHHHHHHHHHTSCCBSSSCCH--HHHHHHHHHHHHHHHHHHHT---TCEEEEECCCEEEC--CCEEE
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCC
T ss_conf             9999999-97799999999999478997999876--55678999999999999977---995999815764244566678


Q ss_pred             CCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-C
Q ss_conf             92489998737-998879997340323288776778886354334542135642224203589999988763147877-7
Q T0607            75 RTPLLFMEIPG-QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-P  152 (471)
Q Consensus        75 ~~~~v~~~~~g-~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~  152 (471)
                      +++||++++++ +++|+|+|++|+||||+++.+.|+++||++.++++++||||+.|||+++++++++++.++..+..+ .
T Consensus        88 ~~~~v~~~~~~~~~~~~v~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~l~GrG~~d~k~~~~~~~~~~~~~~~~~~~~~~  167 (485)
T 3dlj_A           88 IPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPV  167 (485)
T ss_dssp             CCCEEEEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             CCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             88779999789998898999861506378876566459950697287676477655651689999999998753147885


Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHH
Q ss_conf             3689981564336446999999977642-896089976877768776558885102368888986447763445677414
Q T0607           153 RCILIIEACEESGSYDLPFYIELLKERI-GKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIV  231 (471)
Q Consensus       153 ~~~~~~~~~EE~G~~g~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~  231 (471)
                      +++++++.+||.|+.++..++..+...+ ...+.+...+.+......+.+.++.++..++++++.|.+.+.|++..+..+
T Consensus       168 ~~~~~~~~~EE~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~  247 (485)
T 3dlj_A          168 NIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAITYGTRGNSYFMVEVKCRDQDFHSGTFGGIL  247 (485)
T ss_dssp             EEEEEEESCGGGTTTTHHHHHHHHTTTTSTTCCEEEECCCBCCC--CCEEEEEECEEEEEEEEEESCSSCEETTTSTTSS
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCCH
T ss_conf             38999984224464039999996035424676455422422347887448986412157899999548875463335127


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHEE
Q ss_conf             7899999999999740024502133101444300089999998633455565421110012-320010123333221001
Q T0607           232 ADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAK-PVIQDKQQLILNRTWRPA  310 (471)
Q Consensus       232 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t  310 (471)
                      .+++..++..+..+.... ....+++....+.....................  ....... ................++
T Consensus       248 ~~a~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (485)
T 3dlj_A          248 HEPMADLVALLGSLVDSS-GHILVPGIYDEVVPLTEEEINTYKAIHLDLEEY--RNSSRVEKFLFDTKEEILMHLWRYPS  324 (485)
T ss_dssp             CCHHHHHHHHHTTSBCTT-SCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHH--HHHHTCSCCSCSSHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHH--HHHHCCCHHHCCHHHHHHHHHCCCCC
T ss_conf             789999999999863223-663365311221111077887765244578888--65423220102125667765315773


Q ss_pred             EECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCCCCCCCCCCH
Q ss_conf             201302100057851303547489999751278788899999999999973236---63389998315767766899888
Q T0607           311 LTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY---NAKVDFKIQNGGSKGWNAPLLSD  387 (471)
Q Consensus       311 ~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  387 (471)
                      .+++++.+...++++.|+||++|++++|+|+.+..+.+++.+.+++.+.+....   ...++++... .++|+.++.+++
T Consensus       325 ~~v~~i~~~~~~~~~~nvip~~~~~~~~~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~  403 (485)
T 3dlj_A          325 LSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTL-GLHPWIANIDDT  403 (485)
T ss_dssp             EEEEEEESSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCSSEEEEEEEE-EECCEECCTTSH
T ss_pred             EEEEEEECCCCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCCCCCH
T ss_conf             1354333144478643101788999998742786789999999999999998750677507999767-777655799889


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999836976523442776556899998618998999687786667567776004899999999999999999
Q T0607           388 WLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF  467 (471)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l  467 (471)
                      + .+++.+++++++|.++.....+|+++++..|. ...++|++.+|+|..++++|++|||++++++.+++++|+.+|.+|
T Consensus       404 l-v~~l~~a~~~~~g~~~~~~~~~g~~d~~~~~~-~~~~~~~~~~g~g~~~~~~H~~~E~i~~~~~~~~~~i~~~~i~~l  481 (485)
T 3dlj_A          404 Q-YLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQ-EIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEM  481 (485)
T ss_dssp             H-HHHHHHHHHHHHSSCCEEEEESSCCHHHHHHH-HHTC--CEECCCBCTTCCTTSTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHH
T ss_conf             9-99999999998789976884102725789999-866999999788888889889985788999999999999999999


Q ss_pred             HHC
Q ss_conf             713
Q T0607           468 SQK  470 (471)
Q Consensus       468 a~~  470 (471)
                      +|.
T Consensus       482 a~~  484 (485)
T 3dlj_A          482 AQL  484 (485)
T ss_dssp             HTC
T ss_pred             HCC
T ss_conf             660


No 4  
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=100.00  E-value=0  Score=376.70  Aligned_cols=381  Identities=17%  Similarity=0.182  Sum_probs=299.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCEEEEEE
Q ss_conf             9999999998899999999999617897988666666654799999999999998354884178975389--92489998
Q T0607             5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKN--RTPLLFME   82 (471)
Q Consensus         5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~--~~~~v~~~   82 (471)
                      ..++++++ ++++++|++|++||+|||+|++++       ...++++|+++||+++   |++++..+..+  ..+||+++
T Consensus         8 ~~l~~~~~-~~~~~~~~~l~~lv~i~S~s~~~~-------~~~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~nl~~~   76 (393)
T 1cg2_A            8 NVLFQAAT-DEQPAVIKTLEKLVNIETGTGDAE-------GIAAAGNFLEAELKNL---GFTVTRSKSAGLVVGDNIVGK   76 (393)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHTSCCBTTCHH-------HHHHHHHHHHHHHHHT---TCEEEEEECSTTCCSEEEEEE
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCHH-------HHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCEEEEE
T ss_conf             89999999-749999999999968999897989-------9999999999999978---997999846886567779999


Q ss_pred             ECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECC
Q ss_conf             73799887999734032328877677888635433454213564222420358999998876314787-77368998156
Q T0607            83 IPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLP-YPRCILIIEAC  161 (471)
Q Consensus        83 ~~g~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~~  161 (471)
                      ++|+++|+|+|++||||||+++  .|+.+||+  ++++++||||+.|||+++++++.+++.+++.+.. .+++.++++++
T Consensus        77 ~~g~~~~~i~l~~H~DtVp~~~--~w~~~P~~--~~~~~~~g~G~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~  152 (393)
T 1cg2_A           77 IKGRGGKNLLLMSHMDTVYLKG--ILAKAPFR--VEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTD  152 (393)
T ss_dssp             EECSSCCCEEEEEECCBSCCTT--HHHHSCCE--EETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESC
T ss_pred             ECCCCCCEEEEEEECCCCCCCC--CCCCCCEE--EECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             8899999699992356179998--67889868--8799235466666848899999999999973036772799965615


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             43364469999999776428960899768777687765588851023688889864477634456774147899999999
Q T0607           162 EESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQL  241 (471)
Q Consensus       162 EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~  241 (471)
                      ||.++.|...++......   .++++..+..  ......++++++|..+++++++|.  .+||+..+..+.|++..++++
T Consensus       153 EE~~~~g~~~~~~~~~~~---~~~~~~~e~~--~~~~~~i~~g~~G~~~~~i~v~G~--~~Hag~~p~~g~nAi~~a~~~  225 (393)
T 1cg2_A          153 EEKGSFGSRDLIQEEAKL---ADYVLSFEPT--SAGDEKLSLGTSGIAYVQVNITGK--ASHAGAAPELGVNALVEASDL  225 (393)
T ss_dssp             GGGTTTTTHHHHHHHHHH---CSEEEECCCE--ETTSCEEESEECEEEEEEEEEECB--CEETTSCGGGSBCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHCCCC---CCCCCCCCCC--CCCCCCEEEECEEEEEEEEEEEEC--CCCCCCCCCCCHHHHHHHHHH
T ss_conf             433566763112202434---4433223577--577653445120689999999952--666666875323689999999


Q ss_pred             HHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECC
Q ss_conf             99974002450213310144430008999999863345556542111001232001012333322100120130210005
Q T0607           242 ISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPA  321 (471)
Q Consensus       242 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~  321 (471)
                      +..+.....                                                      .....+++++.|.    
T Consensus       226 i~~l~~~~~------------------------------------------------------~~~~~~~~v~~i~----  247 (393)
T 1cg2_A          226 VLRTMNIDD------------------------------------------------------KAKNLRFNWTIAK----  247 (393)
T ss_dssp             HHHHGGGCB------------------------------------------------------TTTTEEEEEEEEE----
T ss_pred             HHHHHHHHC------------------------------------------------------CCCCCCCCCCCCC----
T ss_conf             999874322------------------------------------------------------1123101244333----


Q ss_pred             CCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             78513035474899997512787888999999999999732366338999831576776689988899999999999836
Q T0607           322 IADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYY  401 (471)
Q Consensus       322 ~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  401 (471)
                      ++.+.|+||++|++++|+|+++.++.+++.+.|++.+++......++++++.. .+||+...+.+..+.+.+.+++++.+
T Consensus       248 gG~~~nvIP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~-~~p~~~~~~~~~~l~~~~~~~~~~~~  326 (393)
T 1cg2_A          248 AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTR-GRPAFNAGEGGKKLVDKAVAYYKEAG  326 (393)
T ss_dssp             ECSSTTEECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEEEEEEE-CSCCEECHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             66410477546899899963980229999999999997521689749999962-67765578876899999999999861


Q ss_pred             CCCCCEEECCCCHHHHHHHHHHHCCCCEE-EECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             97652344277655689999861899899-968778666756-77760048999999999999999997139
Q T0607           402 DKPAAYMGEGGTIPFMSMLGEQFPKAQFM-ITGVLGPHSNAH-GPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       402 ~~~~~~~~~gGt~~~~~~~~~~~~~~p~~-~~G~g~~~~~~H-~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      +........+|+ +|+++|...  |+|++ .|||+.  .+.| .+|||++++++.+++++|+.+|.+|++.|
T Consensus       327 ~~~~~~~~~~g~-tDa~~~~~~--giP~i~~~Gp~~--~~~hh~~dE~v~i~~l~~~~~~~~~~i~~l~~g~  393 (393)
T 1cg2_A          327 GTLGVEERTGGG-TDAAYAALS--GKPVIESLGLPG--FGYHSDKAEYVDISAIPRRLYMAARLIMDLGAGK  393 (393)
T ss_dssp             CCCEEESCBSCC-CTHHHHGGG--SCCEECCCSCEE--ECTTSSSCCEEEGGGHHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCCCCCCEE-CHHHHHHHC--CCCEEEEECCCC--CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             988855677517-589999871--999899807887--3447999661789999999999999999985889


No 5  
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis MC58} SCOP: c.56.5.4 d.58.19.1
Probab=100.00  E-value=0  Score=352.90  Aligned_cols=374  Identities=19%  Similarity=0.188  Sum_probs=291.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             99999999999617897988666666654799999999999998354884178975389924899987379988799973
Q T0607            16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG   95 (471)
Q Consensus        16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~   95 (471)
                      ++++|++|++||+|||+|+++          ..++++|++||+++   |++++.+. .++.+||++++ |+.+|+|+|++
T Consensus         5 ~~~~lel~~~Lv~ips~S~~e----------~~~~~~l~~~l~~~---G~~~~~~~-~~~~~nv~a~~-g~~~p~vll~~   69 (393)
T 1vgy_A            5 ETQSLELAKELISRPSVTPDD----------RDCQKLMAERLHKI---GFAAEEMH-FGNTKNIWLRR-GTKAPVVCFAG   69 (393)
T ss_dssp             CSHHHHHHHHHHTSCCBTTCC----------TTHHHHHHHHHHTT---TCEEEECC-BTTBCEEEEEE-CSSSSEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCCCCCH----------HHHHHHHHHHHHHC---CCEEEEEE-ECCCCEEEEEE-CCCCCEEEEEC
T ss_conf             389999999983899979888----------99999999999978---99589997-09932899994-89998799988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCC-HHHHHHH
Q ss_conf             40323288776778886354334542135642224203589999988763147877-736899815643364-4699999
Q T0607            96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESGS-YDLPFYI  173 (471)
Q Consensus        96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G~-~g~~~~~  173 (471)
                      ||||||+++.+.|+++||.+.++++++||||+.|+|+++++++.+++.++..+..+ .++.++|+++||.++ .|+..+.
T Consensus        70 H~Dtvp~~~~~~~~~~p~~~~~~~g~~~grG~~d~k~~va~~l~a~~~~~~~~~~~~~~i~~~~~~~eE~~~~~G~~~~~  149 (393)
T 1vgy_A           70 HTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVV  149 (393)
T ss_dssp             ECCBCCCCCGGGSSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHH
T ss_conf             75648899864542244366898063243132443034466789999752125564665567567431215545738888


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99776428960899768777687765588851023688889864477634456774147899999999999740024502
Q T0607           174 ELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI  253 (471)
Q Consensus       174 ~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  253 (471)
                      ..........|+++..+.+......+.+++|+||.++++++++|.  .+|++.. ....+++..+++++..+........
T Consensus       150 ~~~~~~~~~~D~~i~~e~~~~~~~~~~i~~g~~G~~~~~i~v~G~--~~Hs~~p-~~~~~~~~~~~~~~~~l~~~~~~~~  226 (393)
T 1vgy_A          150 DVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGK--QGHIAYP-HLAINPVHTFAPALLELTQEVWDEG  226 (393)
T ss_dssp             HHHHHTTCCEEEEEECCCCBSSSTTSEEECEECEEEEEEEEEECB--CEETTCG-GGCBCHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEEE--CCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             888855888898998887555778864888636999999999940--7533687-5342147889999999853321024


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE
Q ss_conf             13310144430008999999863345556542111001232001012333322100120130210005785130354748
Q T0607           254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT  333 (471)
Q Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~  333 (471)
                      .                                                 ......+++++.+.++   .++.|+||++|
T Consensus       227 ~-------------------------------------------------~~~~~~~~~v~~i~~g---~~a~nvIP~~~  254 (393)
T 1vgy_A          227 N-------------------------------------------------EYFPPTSFQISNINGG---TGATNVIPGEL  254 (393)
T ss_dssp             C-------------------------------------------------SSCCCCEEEEEEEEEC---CSCTTEECSEE
T ss_pred             C-------------------------------------------------CCCCCCEEEEEEEECC---CCCCCCCCCEE
T ss_conf             7-------------------------------------------------5579834899899869---99766728889


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             99997512787888999999999999732366338999831576776689988899999999999836976523442776
Q T0607           334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT  413 (471)
Q Consensus       334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt  413 (471)
                      ++++|+|..+.++.+++.+.+++.+.+...   ..++++.... +|+. ...++ +..++++++++..+.++.....+|+
T Consensus       255 ~~~~~~R~~~~~~~~~i~~~~~~~~~~~~~---~~~i~~~~~~-~~~~-~~~~~-~~~~~~~a~~~~~g~~~~~~~~~g~  328 (393)
T 1vgy_A          255 NVKFNFRFSTESTEAGLKQRVHAILDKHGV---QYDLQWSCSG-QPFL-TQAGK-LTDVARAAIAETCGIEAELSTTGGT  328 (393)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEEEEE-CCEE-CCSSH-HHHHHHHHHHHHHSSCCEEECCSCC
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCC---CEEEEEEECC-CCCC-CCCCH-HHHHHHHHHHHHHCCCCEEEECCEE
T ss_conf             999973146756699999999999986089---4599993157-8620-23426-9999999999987899768730127


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             556899998618998999687786667567776004899999999999999999713
Q T0607           414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~  470 (471)
                       +|++++.+.  ++|++.|||+.  .++|++||+++++++.+++++|.++|.+|...
T Consensus       329 -~D~~~~~~~--g~p~v~~Gp~~--~~~H~~~E~v~i~~l~~~~~il~~~l~~ll~g  380 (393)
T 1vgy_A          329 -SDGRFIKAM--AQELIELGPSN--ATIHQINENVRLNDIPKLSAVYEGILVRLLAG  380 (393)
T ss_dssp             -CTHHHHGGG--EEEEEECCSBC--TTTTSTTCEEETTHHHHHHHHHHHHHHHHC--
T ss_pred             -CHHHHHHHC--CCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -689999863--99889984799--87679986189999999999999999998588


No 6  
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT}
Probab=100.00  E-value=0  Score=352.36  Aligned_cols=420  Identities=14%  Similarity=0.124  Sum_probs=284.4

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC----CCCEEEEE
Q ss_conf             99999999617897988666666654799999999999998354884178975389924899987379----98879997
Q T0607            19 ILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ----IDDTVLLY   94 (471)
Q Consensus        19 ~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~----~~~~i~l~   94 (471)
                      +++.|++||+|||+|++          ++++++||++||+++   |+++++    +..+||+++++|+    +.|+|+|+
T Consensus        13 ~~~~~~~l~~iPs~s~~----------e~~~~~~l~~~l~~~---G~~v~~----d~~gnv~~~~~g~~~~~~~~~Ill~   75 (487)
T 2qyv_A           13 LWQWFDQICAIPHPSYK----------EEQLAQFIINWAKTK---GFFAER----DEVGNVLIRKPATVGMENRKPVVLQ   75 (487)
T ss_dssp             HHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHHHT---TCEEEE----CTTCCEEEEECCCTTCTTBCCEEEE
T ss_pred             HHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----ECCCEEEEEECCCCCCCCCCEEEEE
T ss_conf             99999999379999958----------999999999999978---998999----4688699998777888999979998


Q ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf             34032328877---677888635433454213564222420358999998876314787773689981564336446999
Q T0607            95 GHLDKQPEMSG---WSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPF  171 (471)
Q Consensus        95 ~H~DvVp~~~~---~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~  171 (471)
                      +|+||||+++.   ++|++|||++.++|+++||||+.|||+++++++++++.+++.+.++++++++++++||.|+.|+..
T Consensus        76 ~H~DvVP~~~~~~~~~W~~dPf~~~~~d~~lyGRG~~D~K~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~EE~g~~G~~~  155 (487)
T 2qyv_A           76 AHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGTTLGADNGIGMASALAVLESNDIAHPELEVLLTMTEERGMEGAIG  155 (487)
T ss_dssp             EESCBCCC----------CCCCCEEECSSEEEETTBCCCHHHHHHHHHHHHHHHCSSSCCSSEEEEEESCTTTTCHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHH
T ss_conf             61153789998774546679815798688998886456786889999999755531478998899999942578766888


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCC-------------CCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCH-HHHHHHH
Q ss_conf             99997764289608997687776-------------877655888510236888898644776344567741-4789999
Q T0607           172 YIELLKERIGKPSLVICLDSGAG-------------NYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGI-VADSFRV  237 (471)
Q Consensus       172 ~~~~~~~~~~~~d~~~~~~~~~~-------------~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~-~~~~~~~  237 (471)
                      +..    .+...++.+..+....             ....+.++.+.+|..+++++++|... .||+..++. ..|++..
T Consensus       156 ~~~----~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~-~hs~~~~~~~~~nai~~  230 (487)
T 2qyv_A          156 LRP----NWLRSEILINTDTEENGEIYIGCAGGENADLELPIEYQVNNFEHCYQVVLKGLRG-GHSGVDIHTGRANAIKV  230 (487)
T ss_dssp             CCS----SCCCCSEEEECCCCCTTEEEEEECEEEEEEEEEECCEEECCCSEEEEEEEECCCC-CBTTTTTTSCCCCHHHH
T ss_pred             HHH----HHCCCCEEEEECCCCCCCEEEECCCCCCCCEECCEEEECCCCCEEEEEEEECCCC-CCCCCCCCCCHHHHHHH
T ss_conf             875----3024342688635667731463146644301100012103550699999816887-64576633246889999


Q ss_pred             HHHHHHHHHHCCCCEEECCCC-----CCC--------CC------CCCHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_conf             999999974002450213310-----144--------43------000899999986334555654211100--------
Q T0607           238 ARQLISRIEDENTGEIKLPQL-----YCD--------IP------DERIKQAKQCAEILGEQVYSEFPWIDS--------  290 (471)
Q Consensus       238 ~~~~~~~l~~~~~~~~~~~g~-----~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  290 (471)
                      +.+++..+...........+.     ..+        ..      .............+.............        
T Consensus       231 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (487)
T 2qyv_A          231 LLRFLAELQQNQPHFDFTLANIRGGSIRNAIPRESVATLVFNGDITVLQSAVQKFADVIKAELALTEPNLIFTLEKVEKP  310 (487)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEEEEEESCTTBCCCCEEEEEEECSCHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEECCCC
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             99999852201465222000020365322257625999970565788999999999999887612477742788861465


Q ss_pred             HHHHHCCCHHHHHHHHHHEEEECCEEEEECCCC-------CCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             123200101233332210012013021000578-------5130354748999975127878889999999999997323
Q T0607           291 AKPVIQDKQQLILNRTWRPALTVTGADGFPAIA-------DAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPP  363 (471)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~-------~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~  363 (471)
                      ......................+........+.       +..+.+++.+++.+++|+++....+.+.+.++..++..  
T Consensus       311 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~--  388 (487)
T 2qyv_A          311 QQVFSSQCTKNIIHCLNVLPNGVVRNSDVIENVVETSLSIGVLKTEDNFVRSTMLVRSLIESGKSYVASLLKSLASLA--  388 (487)
T ss_dssp             SEEECHHHHHHHHHHHHHSCCEEEEECSSSTTCEEEEEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC--
T ss_conf             555674666678876322777642001454652587533324742688349999862587425999999999998873--


Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             66338999831576776689988899999999999836976523442776556899998618998999687786667567
Q T0607           364 YNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHG  443 (471)
Q Consensus       364 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~  443 (471)
                       +.++++..   .++||..+.++++ .+.+.+++++++|.++.....+|+ .|++.|.+.++++|++.|||+.  .++|+
T Consensus       389 -~~~v~~~~---~~~~~~~~~~~~l-v~~l~~a~~~~~G~~~~~~~~~gg-td~~~~~~~~~~~~~i~fGp~~--~~~H~  460 (487)
T 2qyv_A          389 -QGNINLSG---DYPGWEPQSHSDI-LDLTKTIYAQVLGTDPEIKVIHAG-LECGLLKKIYPTIDMVSIGPTI--RNAHS  460 (487)
T ss_dssp             -TCEEEEEE---EECCBCCCSCCHH-HHHHHHHHHHHHSSCCEEEEESSC-CTHHHHHHHCTTSEEEECCCCE--ESTTS
T ss_pred             -CEEEEEEC---CCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEEEEE-CHHHHHHHHCCCCCEEEECCCC--CCCCC
T ss_conf             -93999933---6777588999999-999999999987879869998841-4499998657999899989899--99978


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             776004899999999999999999713
Q T0607           444 PNEFLHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       444 ~~E~~~i~~l~~~~~il~~~l~~la~~  470 (471)
                      +|||++++++.+++++|.++|.+|+.|
T Consensus       461 ~nE~v~i~~~~~~~~~~~~~L~~l~~~  487 (487)
T 2qyv_A          461 PDEKVHIPAVETYWKVLTGILAHIPSR  487 (487)
T ss_dssp             TTCEEEHHHHHHHHHHHHHHHHHCCBC
T ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHCCC
T ss_conf             784898999999999999999865329


No 7  
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=100.00  E-value=0  Score=342.19  Aligned_cols=422  Identities=16%  Similarity=0.159  Sum_probs=281.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEE-C
Q ss_conf             99999988999999999996178979886666--66654799999999999998354884178975389924899987-3
Q T0607             8 YDYICQQWQEEILPSLCDYIKIPNKSPHFDAK--WEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEI-P   84 (471)
Q Consensus         8 ~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~-~   84 (471)
                      .+++ +.++|+++++|++||+|||+|+++...  .+......++++++.++++..   |++++.+.      |+++++ .
T Consensus         6 ~~~~-e~~~~~~l~~l~~lv~ips~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~------~~~~~~~~   75 (470)
T 1lfw_A            6 KELA-EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRD---GFDTENFA------NYAGRVNF   75 (470)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHT---TCEEEEET------TTEEEEEE
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEC------CEEEEEEC
T ss_conf             9999-99999999999999579998988444322335678999999999999975---98206878------37999972


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCC
Q ss_conf             799887999734032328877677888635433-454213564222420358999998876314787-773689981564
Q T0607            85 GQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVL-KNGLLYGRGGADDGYSAYASLTAIRALEQQGLP-YPRCILIIEACE  162 (471)
Q Consensus        85 g~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~-~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~~E  162 (471)
                      ++++|+|+|++||||||+++  .|+++||.+.+ +++++||||+.|||+++++++.|++.+++.+.. +.++.++|+++|
T Consensus        76 ~~~~~~i~l~~H~DvVp~~~--~W~~~Pf~~~~~~~g~l~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~dE  153 (470)
T 1lfw_A           76 GAGDKRLGIIGHMDVVPAGE--GWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNE  153 (470)
T ss_dssp             CCCSSEEEEEEECCBCCCCS--CCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCT
T ss_pred             CCCCCEEEEEEEECCCCCCC--CCCCCCCCEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf             89999799998876269999--8656996103854881654874478885178899999998734688886245445030


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCC---------------
Q ss_conf             33644699999997764289608997687776877655888510236888898644776344567---------------
Q T0607           163 ESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSA---------------  227 (471)
Q Consensus       163 E~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~---------------  227 (471)
                      |.|+.|++++++.    ....++++.+++.      ..+++|+||.++++++++|...  |++..               
T Consensus       154 E~g~~Ga~~l~~~----~~~~~~~i~~d~~------~~i~~g~kG~~~~~i~v~g~~~--h~~~~~~~~~~~~~~~~i~~  221 (470)
T 1lfw_A          154 ETNWVGIDYYLKH----EPTPDIVFSPDAE------YPIINGEQGIFTLEFSFKNDDT--KGDYVLDKFKAGIATNVTPQ  221 (470)
T ss_dssp             TTTCHHHHHHHHH----SCCCSEEEESSEE------SSEEEEECEEEEEEEEECCCCC--CCSBEEEEEEECSBTTBCCS
T ss_pred             CCCCHHHHHHHHH----CCCCCEEEECCCC------CCCCCCCCCEEEEEEEEECCCC--CCCCCCCCCCCCCCCCCHHH
T ss_conf             1377669999972----8998599988998------7540012665999999741476--65542234223322442111


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_conf             ------7414789999999999974002----------4502133101444300089999998633455565421--110
Q T0607           228 ------SGIVADSFRVARQLISRIEDEN----------TGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFP--WID  289 (471)
Q Consensus       228 ------~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  289 (471)
                            .......+..............          ...+.....|...++...+++......+.........  ...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~h~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~  301 (470)
T 1lfw_A          222 VTRATISGPDLEAVKLAYESFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLH  301 (470)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHTCEEEEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHH
T ss_pred             HHEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             12344136645889999987654227763388506753389812000100863344879999999998532200122455


Q ss_pred             HHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             01232001012333322100120130210005785130354748999975127878889999999999997323663389
Q T0607           290 SAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVD  369 (471)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  369 (471)
                      ................. ..+....+ ......+...|++|+++++.+|+|+.+..+.+++.+.+.+.+..      ...
T Consensus       302 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~------~~~  373 (470)
T 1lfw_A          302 FLAEVEHEDFYGKKLGI-FHHDDLMG-DLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG------ILD  373 (470)
T ss_dssp             HHHHTTTTCTTSTTTTC-CCEETTTE-ECEEEEEEEEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT------TEE
T ss_pred             HHHHHCCCCCCCCCCCC-CCCCCCCC-CEEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCC------CEE
T ss_conf             56653377766642344-44445434-30353362003568769999977518989999999999998577------617


Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCC
Q ss_conf             9983157677668998889999999999983697652344277655689999861899899968778--66675677760
Q T0607           370 FKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLG--PHSNAHGPNEF  447 (471)
Q Consensus       370 v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~--~~~~~H~~~E~  447 (471)
                      ++.. ..++|+.++.++|++ +.+.+++++++|.++.....+|+ +|++.|    +.  ++.+||+.  ...++|+||||
T Consensus       374 i~~~-~~~~p~~~~~~~p~v-~~l~~a~~~~~g~~~~~~~~~gg-tda~~~----~~--~v~~G~~~~g~~~~~H~~nE~  444 (470)
T 1lfw_A          374 VTYN-GFEEPHYVPGSDPMV-QTLLKVYEKQTGKPGHEVVIGGG-TYGRLF----ER--GVAFGAQPENGPMVMHAANEF  444 (470)
T ss_dssp             EECS-CCBCCEECCTTCHHH-HHHHHHHHHHHCCCCCEEEESSC-CGGGGS----TT--CEECCEECTTCCCCTTSTTCE
T ss_pred             EEEE-ECCCCCCCCCCCHHH-HHHHHHHHHHHCCCCEEEEEECH-HHHHHH----CC--EEEECCCCCCCCCCCCCCCCC
T ss_conf             9997-435775469988999-99999999987899759987121-288762----24--289566369987674764453


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             04899999999999999999713
Q T0607           448 LHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       448 ~~i~~l~~~~~il~~~l~~la~~  470 (471)
                      ++++++.+++++|+.+|.+|++.
T Consensus       445 v~i~~l~~~~~vy~~~i~~La~~  467 (470)
T 1lfw_A          445 MMLDDLILSIAIYAEAIYELTKD  467 (470)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88999999999999999998516


No 8  
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=100.00  E-value=0  Score=351.56  Aligned_cols=362  Identities=14%  Similarity=0.096  Sum_probs=263.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEE
Q ss_conf             88999999999996178979886666666547999999999999983548841789753899248999873799887999
Q T0607            14 QWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLL   93 (471)
Q Consensus        14 ~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l   93 (471)
                      +..++.|++|++||+|||+|+.....     .+..+++||+++|     .|+++++++..++++|+++..   ++|+|+|
T Consensus         6 ~~~~~~l~~L~~Lv~i~s~~~~~~~~-----~~~~~~~~l~~~l-----~g~~~~~~~~~~~~~~l~~~~---g~~~i~l   72 (369)
T 2f7v_A            6 DLLASTLEHLETLVSFDTRNPPRAIA-----AEGGIFDYLRAQL-----PGFQVEVIDHGDGAVSLYAVR---GTPKYLF   72 (369)
T ss_dssp             HHHHHHHHHHHHHHHSCCBTTTTCCC-----SSSHHHHHHHTTC-----TTCEEEEEECSTTCEEEEEEE---SCCSEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCH-----HHHHHHHHHHHHC-----CCCEEEEEECCCCEEEEEEEC---CCCEEEE
T ss_conf             67999999999981987869998547-----8999999999974-----898589995699769999983---9984999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH-HHH
Q ss_conf             7340323288776778886354334542135642224203589999988763147877736899815643364469-999
Q T0607            94 YGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDL-PFY  172 (471)
Q Consensus        94 ~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~-~~~  172 (471)
                      ++|+||||++  ..|+++||+++++|+++||||+.|||+++++++++++.      +.+++.++|+++||.|+.++ .++
T Consensus        73 ~~H~DtVp~~--~~w~~~Pf~~~~~~g~iyGrG~~D~Kg~~aa~l~a~~~------~~~~i~~~~~~dEE~g~~~~~~~~  144 (369)
T 2f7v_A           73 NVHLDTVPDS--PHWSADPHVMRRTEDRVIGLGVCDIKGAAAALVAAANA------GDGDAAFLFSSDEEANDPRCIAAF  144 (369)
T ss_dssp             EEECCBCCCC--SSCSSCTTSCEECSSEEECTTTTTTHHHHHHHHHHHTT------CCCCEEEEEESCTTSSSCCHHHHH
T ss_pred             ECCCCCCCCC--CCCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHH------CCCCEEEEEEEEEHCCCCCHHHHH
T ss_conf             8477707899--98755898549989999977855626999999999985------699989999961000333101345


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             99977642896089976877768776558885102368888986447763445677414789999999999974002450
Q T0607           173 IELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGE  252 (471)
Q Consensus       173 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~  252 (471)
                      +    ......|++++.+.     +...+++++||.++++++++|.+  +||+..+..+.+++..+.+++..+.+...  
T Consensus       145 ~----~~~~~~d~~i~~e~-----~~~~i~~g~kG~~~~~i~~~G~~--~Hss~~~~~g~~a~~~a~~~~~~l~~~~~--  211 (369)
T 2f7v_A          145 L----ARGLPYDAVLVAEP-----TMSEAVLAHRGISSVLMRFAGRA--GHASGKQDPAASALHQAMRWGGKALDHVE--  211 (369)
T ss_dssp             H----TTCCCCSEEEECCC-----STTCBBCCBCCEEEEEEEEECCC--C------CTTSCHHHHHHHHHHHHHHHHH--
T ss_pred             H----HHCCCCCCEEEECC-----CCCEEEEECCCEEEEEEEEECCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHH--
T ss_conf             5----40366551354012-----34406774252589999991355--33557643444189999999998899998--


Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCE
Q ss_conf             21331014443000899999986334555654211100123200101233332210012013021000578513035474
Q T0607           253 IKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPV  332 (471)
Q Consensus       253 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~  332 (471)
                                                ...                  .........++.+++.|.+    +.+.|+||++
T Consensus       212 --------------------------~~~------------------~~~~~~~~~~t~~v~~I~g----G~~~n~ip~~  243 (369)
T 2f7v_A          212 --------------------------SLA------------------HARFGGLTGLRFNIGRVDG----GIKANMIAPA  243 (369)
T ss_dssp             --------------------------HTT------------------TCEETTEESCEEEEEEEEE----CSSTTSCCSE
T ss_pred             --------------------------HHH------------------CCCCCCCCCCCCCCCEEEC----CCCCCCCCCC
T ss_conf             --------------------------764------------------1556753222103515711----3246250772


Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf             89999751278788899999999999973236633899983157677668998889999999999983697652344277
Q T0607           333 TSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGG  412 (471)
Q Consensus       333 ~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gG  412 (471)
                      |++.+|+|++|.++.+++.+.+++.+++.   ...+++.......+.+..+ ..+....+++.+.+.. ..+......+|
T Consensus       244 a~~~~diR~~p~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~g  318 (369)
T 2f7v_A          244 AELRFGFRPLPSMDVDGLLATFAGFADPA---AAHFEETFRGPSLPSGDIA-RAEERRLAARDVADAL-DLPIGNAVDFW  318 (369)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHTCSSC---CSEEEEEEEECCBSCSSHH-HHHHHHHHHHHHHHHT-TCCBCCCBSSC
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHHHHH---CCEEEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHH-CCCCCCCCCEE
T ss_conf             59999993698678999999999988674---1604898615787777665-4226799999999973-88876732203


Q ss_pred             CHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6556899998618998999687786667567776004899999999999999999
Q T0607           413 TIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF  467 (471)
Q Consensus       413 t~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l  467 (471)
                        +|++.|...  |+|++.||||.. +++|++|||+++++|.+++++|.++|..+
T Consensus       319 --tDa~~~~~~--Gip~v~~GPg~~-~~aH~~dE~v~i~~l~~~~~~~~~~i~~~  368 (369)
T 2f7v_A          319 --TEASLFSAG--GYTALVYGPGDI-AQAHTADEFVTLAQLQRYVESVNRIINGS  368 (369)
T ss_dssp             --CTHHHHHHT--TCCEEECCSSCG-GGTTCTTCEEEHHHHHHHHHHHHHHHHCC
T ss_pred             --CHHHHHHHC--CCCEEEECCCCC-CCCCCCCCEEEHHHHHHHHHHHHHHHHCC
T ss_conf             --559999857--999999899971-44878985089999999999999998316


No 9  
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A
Probab=100.00  E-value=0  Score=328.27  Aligned_cols=373  Identities=18%  Similarity=0.187  Sum_probs=288.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             99999999999617897988666666654799999999999998354884178975389924899987379988799973
Q T0607            16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG   95 (471)
Q Consensus        16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~   95 (471)
                      ||++|++|++||+|||+|+++.          .++++|.+||+++   |+++++++. ++.+|+++++ ++++|+|+|++
T Consensus         2 ~d~~i~l~~~lv~ipS~s~~e~----------~~~~~l~~~l~~l---G~~v~~~~~-~~~~~v~a~~-~~~~p~ill~~   66 (377)
T 3isz_A            2 KEKVVSLAQDLIRRPSISPNDE----------GCQQIIAERLEKL---GFQIEWMPF-NDTLNLWAKH-GTSEPVIAFAG   66 (377)
T ss_dssp             HHHHHHHHHHHHTSCCBTTCCT----------THHHHHHHHHHHT---TCEEEECCB-TTBCEEEEEE-ESSSCEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCCCCCHH----------HHHHHHHHHHHHC---CCEEEEEEE-CCEEEEEEEC-CCCCCEEEEEC
T ss_conf             3899999999947999798858----------9999999999977---994899981-9988999986-89998799979


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCH-HHHHHH
Q ss_conf             40323288776778886354334542135642224203589999988763147877-7368998156433644-699999
Q T0607            96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESGSY-DLPFYI  173 (471)
Q Consensus        96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G~~-g~~~~~  173 (471)
                      ||||||+++.+.|.++||...++++++||||+.|+|++.++++.+++.+.+.+... .++.+++..+||.++. |+....
T Consensus        67 H~Dtvp~~~~~~~~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~~~g~~~~~  146 (377)
T 3isz_A           67 HTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVV  146 (377)
T ss_dssp             ECCBCCCCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHH
T ss_conf             88858988764343223331574375301024444332101467789877640477733775000011211047722445


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99776428960899768777687765588851023688889864477634456774147899999999999740024502
Q T0607           174 ELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI  253 (471)
Q Consensus       174 ~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  253 (471)
                      ..+.......++++..+..........++.|++|..+++++++|..  +|++. +....+++..++.++..+........
T Consensus       147 ~~~~~~~~~~~~~i~~ept~~~~~~~~i~~g~~G~~~~~i~v~G~~--~H~~~-p~~~~~~~~~~~~~~~~l~~~~~~~~  223 (377)
T 3isz_A          147 ETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQ--GHVAY-PHLAENPIHKAALFLQELTTYQWDKG  223 (377)
T ss_dssp             HHHHHTTCCCCEEEECCCCBSSSTTSEEEEEECEEEEEEEEEECC----------CGGGCHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEC--CCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             6665246773499994788865577447771379999999998604--64226-75465403556777777665431457


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE
Q ss_conf             13310144430008999999863345556542111001232001012333322100120130210005785130354748
Q T0607           254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT  333 (471)
Q Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~  333 (471)
                      .                                                 ......+.+++.+.+   +..+.|++|+.+
T Consensus       224 ~-------------------------------------------------~~~~~~~~~~~~i~~---g~~~~n~~~~~~  251 (377)
T 3isz_A          224 N-------------------------------------------------EFFPPTSLQIANIHA---GTGSNNVIPAEL  251 (377)
T ss_dssp             C-------------------------------------------------SSSCCCEEEEEEEEE---CCSCSSCCCSEE
T ss_pred             C-------------------------------------------------CCEEEEEEEEEEEEC---CCCCCCCCCEEE
T ss_conf             8-------------------------------------------------620145578867863---665566433235


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             99997512787888999999999999732366338999831576776689988899999999999836976523442776
Q T0607           334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT  413 (471)
Q Consensus       334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt  413 (471)
                      ++.+++|..+....+.+.+.+++.+++..   ..+++++... .+|+.. ..++.+..+.+ ++++..|.++.....+|+
T Consensus       252 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~g~~~~~~~~~g~  325 (377)
T 3isz_A          252 YIQFNLRYCTEVTDEIIKQKVAEMLEKHN---LKYRIEWNLS-GKPFLT-KPGKLLDSITS-AIEETIGITPKAETGGGT  325 (377)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEEC-CCCEEC-CTTHHHHHHHH-HHHHHHSCCCEEEECSSC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEEEC-CCCCCC-CCCHHHHHHHH-HHHHHHCCCCEEEEECCC
T ss_conf             89840004862016899999999998619---8189999854-685337-98459999999-999987899738862435


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55689999861899899968778666756777600489999999999999999971
Q T0607           414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ  469 (471)
Q Consensus       414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~  469 (471)
                       +|++++..  .|+|++.|||+.  .++|+||||++++++.+++++|.++|.+|++
T Consensus       326 -~Da~~~~~--~g~p~~~~Gpg~--~~~H~~~E~v~i~~l~~~~~vl~~~i~~l~~  376 (377)
T 3isz_A          326 -SDGRFIAL--MGAEVVEFGPLN--STIHKVNECVSVEDLGKCGEIYHKMLVNLLD  376 (377)
T ss_dssp             -CSHHHHHT--TTCEEEECCSBC--TTTTSTTCEEEHHHHHHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHH--HCCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHC
T ss_conf             -69999997--099999994699--9887998418999999999999999999876


No 10 
>1fno_A Peptidase T; metallo peptidase, protease, zinc, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A
Probab=100.00  E-value=0  Score=339.97  Aligned_cols=370  Identities=14%  Similarity=0.103  Sum_probs=277.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC---CCCEEEE
Q ss_conf             9999999999617897988666666654799999999999998354884178975389924899987379---9887999
Q T0607            17 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ---IDDTVLL   93 (471)
Q Consensus        17 ~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~---~~~~i~l   93 (471)
                      |++|++|.+||+|||+|++.....+.++.+++++++|+++|+++|   ++...+   +..+|++++++|+   +.|+|+|
T Consensus         2 ~~~~~~~~~lv~I~s~s~~~~~~~p~~~~e~~~a~~l~~~l~~lG---~~~~~~---d~~gnv~a~~~g~~~~~~p~il~   75 (417)
T 1fno_A            2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMG---LVNITL---SEKGTLMATLPANVEGDIPAIGF   75 (417)
T ss_dssp             CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHT---CEEEEE---CTTCCEEEEECCSSCSCCCCEEE
T ss_pred             HHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---CEEEEE---CCCCEEEEEECCCCCCCCCEEEE
T ss_conf             689999998763057169876789898789999999999999679---938998---89964999981457899988999


Q ss_pred             ECCCCCCCCCCCCCC-------------------------CCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHH
Q ss_conf             734032328877677-------------------------8886354334542135642----22420358999998876
Q T0607            94 YGHLDKQPEMSGWSD-------------------------DLHPWKPVLKNGLLYGRGG----ADDGYSAYASLTAIRAL  144 (471)
Q Consensus        94 ~~H~DvVp~~~~~~w-------------------------~~~Pf~~~~~~~~~~GrG~----~D~k~~~~~~l~a~~~l  144 (471)
                      ++|+||||++++|++                         .++||...+.++.+||||.    +|||+++++++.+++.+
T Consensus        76 ~~H~DtVp~g~~~~~~P~~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rg~~~~~ad~k~g~~~~l~a~~~l  155 (417)
T 1fno_A           76 ISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVL  155 (417)
T ss_dssp             EEECCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHCCCCCCEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             89656289999877697354545686000354323102211664212124648983673024676478999999999999


Q ss_pred             HHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCC
Q ss_conf             31478777368998156433644699999997764289608997687776877655888510236888898644776344
Q T0607           145 EQQGLPYPRCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHS  224 (471)
Q Consensus       145 ~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs  224 (471)
                      ++.+.+.+++.++|+.+||.++ |+..+...   .+ .+++.+..+.+    ....+.++.+|..+++++++|.  .+||
T Consensus       156 ~~~~~~~~~i~~~~~~~EE~~~-G~~~~~~~---~~-~~d~a~~~~~~----~~~~i~~~~~g~~~~~i~~~G~--~~Ha  224 (417)
T 1fno_A          156 KGNPIPHGDIKVAFTPDEEVGK-GAKHFDVE---AF-GAQWAYTVDGG----GVGELEFENFNAASVNIKIVGN--NVHP  224 (417)
T ss_dssp             HSSSCCCCCEEEEEESCGGGTC-TTTTCCHH---HH-CCSEEEECCCC----STTBEECCBCEEEEEEEEEECB--CCCG
T ss_pred             HHCCCCCCCEEEEEEEECCCCC-HHHHHHHH---CC-CCCEEEEEECC----CCCCCEEEECCCEEEEEEECCC--CCCC
T ss_conf             8579988868999874011474-28888763---56-98689998515----8875134301305999995368--8777


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             56774147899999999999740024502133101444300089999998633455565421110012320010123333
Q T0607           225 GSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILN  304 (471)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (471)
                      +..++.+.|++..+.+++..+......                                                     
T Consensus       225 g~~~~~~~nai~~a~~~i~~l~~~~~~-----------------------------------------------------  251 (417)
T 1fno_A          225 GTAKGVMVNALSLAARIHAEVPADEAP-----------------------------------------------------  251 (417)
T ss_dssp             GGCTTTCBCHHHHHHHHHHTSCTTSSG-----------------------------------------------------
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCC-----------------------------------------------------
T ss_conf             664235500799999999987641688-----------------------------------------------------


Q ss_pred             HHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCC-CC
Q ss_conf             221001201302100057851303547489999751278788899999999999973236---63389998315767-76
Q T0607           305 RTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY---NAKVDFKIQNGGSK-GW  380 (471)
Q Consensus       305 ~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~v~~~~~~~~-~~  380 (471)
                         ..+..+.++    ..++..|++|+++++.+++|..+.++.+++.+.+++.+++....   ...+.++......+ ++
T Consensus       252 ---~~t~~~~~~----~~g~~~n~ip~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  324 (417)
T 1fno_A          252 ---ETTEGYEGF----YHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMRE  324 (417)
T ss_dssp             ---GGCCTTCCE----EEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHTTTCCTTCCEEEEEEEEECCCHH
T ss_pred             ---CCEEEECCC----CCCCCCCEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
T ss_conf             ---732553465----4476411022239999999379866699999999999999999848974999999525777657


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             68998889999999999983697652344277655689999861899899968778666756777600489999999999
Q T0607           381 NAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCV  460 (471)
Q Consensus       381 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il  460 (471)
                      ..+.+++ +++++++++++++..+...++.||  +|+++|..  .|+|++.+|||.  .++|++|||+++++|.+++++|
T Consensus       325 ~~~~~~~-~v~~~~~a~~~~g~~~~~~~~~gg--tDa~~~~~--~Gip~v~~GpG~--~~~H~~nE~v~i~~l~~~~~i~  397 (417)
T 1fno_A          325 KVVEHPH-ILDIAQQAMRDCHITPEMKPIRGG--TDGAQLSF--MGLPCPNLFTGG--YNYHGKHEFVTLEGMEKAVQVI  397 (417)
T ss_dssp             HHHTSTH-HHHHHHHHHHHTTCCCBCCCBSSC--CHHHHHTT--TTCCCCEECCSE--ESTTSTTCEEEHHHHHHHHHHH
T ss_pred             CCCCCHH-HHHHHHHHHHHHCCCCEEEEEEEE--CHHHHHHH--CCCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHH
T ss_conf             7888989-999999999983999389987748--78999986--799999988587--8885997188999999999999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999713
Q T0607           461 SYVLYSFSQK  470 (471)
Q Consensus       461 ~~~l~~la~~  470 (471)
                      .++++.+|+|
T Consensus       398 ~~li~~~a~~  407 (417)
T 1fno_A          398 VRIAELTAKR  407 (417)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
T ss_conf             9999999976


No 11 
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}
Probab=100.00  E-value=0  Score=317.48  Aligned_cols=352  Identities=19%  Similarity=0.241  Sum_probs=256.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEE
Q ss_conf             88999999999996178979886666666547999999999999983548841789753899248999873799887999
Q T0607            14 QWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLL   93 (471)
Q Consensus        14 ~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l   93 (471)
                      +.++++|++|++||+|||+|++++       ...++++++++||+++   |++++.++. ++.+++++. +++++|+|+|
T Consensus         3 ~~~~~~v~ll~~lv~ipS~s~~~~-------~~~~~a~~l~~~l~~~---G~~~~~~~~-~~~~~~~~~-~~~~~~~ill   70 (364)
T 2rb7_A            3 SSMQHIVELTSDLIRFPSMHSRPE-------QISRCAGFIMDWCAQN---GIHAERMDH-DGIPSVMVL-PEKGRAGLLL   70 (364)
T ss_dssp             HHHHHHHHHHHHHHTSCCCTTCHH-------HHHHHHHHHHHHHHHT---TCCCEEEEE-TTEEEEEEC-SBTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHH-------HHHHHHHHHHHHHHHC---CCEEEEEEC-CCEEEEEEE-ECCCCCEEEE
T ss_conf             778999999999956999895827-------8999999999999977---995999806-995799998-3799982999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHCCCC--CCCEEEEEECCCCCCCH
Q ss_conf             734032328877677888635433454213564222420358999998----876314787--77368998156433644
Q T0607            94 YGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAI----RALEQQGLP--YPRCILIIEACEESGSY  167 (471)
Q Consensus        94 ~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~----~~l~~~~~~--~~~~~~~~~~~EE~G~~  167 (471)
                      ++|+||||.+      .+||.+.++++++||||+.|+|+++++++.++    +.+++.+..  ...+.++++.+||.|+.
T Consensus        71 ~~H~DtVp~~------~~p~~~~~~~~~i~grG~~D~kg~~a~~l~a~~~~l~~l~~~~~~~~~~~i~~~~~~~EE~g~~  144 (364)
T 2rb7_A           71 MAHIDVVDAE------DDLFVPRVENDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGM  144 (364)
T ss_dssp             EEECCCCCCC------GGGGSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTST
T ss_pred             ECCCCCCCCC------CCCCCCEEECCEEEECCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC
T ss_conf             8524756799------8878648989879854656777525410245678888887527888995599998413104620


Q ss_pred             -HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -6999999977642896089976877768776558885102368888986447763445677414789999999999974
Q T0607           168 -DLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIE  246 (471)
Q Consensus       168 -g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~  246 (471)
                       |...+.    +. ...+.++..++..    ...++++++|.++++++++|..  +|++. +....|++..+.+++..+.
T Consensus       145 ~g~~~~~----~~-~~~~~~~~~~~~~----~~~i~~~~~G~~~~~i~v~G~~--~H~~~-p~~g~nAi~~~~~~i~~l~  212 (364)
T 2rb7_A          145 NGAAKAL----PL-IRADYVVALDGGN----PQQVITKEKGIIDIKLTCTGKA--AHGAR-PWMGVNAVDLLMEDYTRLK  212 (364)
T ss_dssp             TTHHHHG----GG-CEEEEEEECSSSB----TTEEEEEECEEEEEEEEEECBC--EETTS-GGGSBCHHHHHHHHHHHHH
T ss_pred             CCHHHHH----HH-HCCCCEEECCCCC----CCEEEEECCCCEEEEEEEECCC--CCCCC-CCCCCCHHHHHHHHHHHHH
T ss_conf             0268775----43-0132122204678----6217985031158999727577--63233-2368898898999999998


Q ss_pred             HCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCC
Q ss_conf             00245021331014443000899999986334555654211100123200101233332210012013021000578513
Q T0607           247 DENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAG  326 (471)
Q Consensus       247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~  326 (471)
                      ......                                                  ......++++++.+.+    +.+.
T Consensus       213 ~~~~~~--------------------------------------------------~~~~~~~t~~i~~i~g----g~~~  238 (364)
T 2rb7_A          213 TLFAEE--------------------------------------------------NEDHWHRTVNLGRIRA----GEST  238 (364)
T ss_dssp             TTSCCC--------------------------------------------------CTTCCSCEEEEEEEEE----CSCT
T ss_pred             HHHCCC--------------------------------------------------CCCCCCEEEECCCCCC----CCCC
T ss_conf             751213--------------------------------------------------6764320574132015----5345


Q ss_pred             CEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             03547489999751278788899999999999973236633899983157677668998889999999999983697652
Q T0607           327 NVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAA  406 (471)
Q Consensus       327 nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  406 (471)
                      |+||++|++++|+|+.+.++.+++.+.+++.++.      .+++...   +++ ..+.++|++..+ .++.+...     
T Consensus       239 NvIP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~------~~~~~~~---~p~-~~~~~~~~~~~~-~~~~~~~~-----  302 (364)
T 2rb7_A          239 NKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG------TVSIVRT---VPV-FLAADSPYTERL-LALSGATA-----  302 (364)
T ss_dssp             TEECSEEEEEEEEEECTTSCHHHHHHHHHHHCSS------EEEEEEE---ECC-EECCCCHHHHHH-HHHHCCEE-----
T ss_pred             CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCC------CEEEEEC---CCC-CCCCCCHHHHHH-HHHHCCCC-----
T ss_conf             1356403999998359856899999999976245------1478743---675-456788999999-99746546-----


Q ss_pred             EEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3442776556899998618998999687786667567776004899999999999999999713
Q T0607           407 YMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       407 ~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~  470 (471)
                      ....||  +|+++|...  |+|++.+||+.. +++|+||||++++++.+++++|.++|.+|.+.
T Consensus       303 ~~~~g~--sDa~~~~~~--g~p~v~~gpg~~-~~~H~~~E~v~~~~l~~~~~~l~~~l~~l~~~  361 (364)
T 2rb7_A          303 GKAHGA--SDARYLGEN--GLTGVVWGAEGF-NTLHSRDECLHIPSLQSIYDPLMQLAREMEEH  361 (364)
T ss_dssp             EEESSC--CGGGGTGGG--TCCEEECCCCCT-TCTTSTTCEEETTHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCEE--CHHHHHHHC--CCCEEEECCCCC-CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf             788716--479999866--999999888886-77588875289999999999999999999874


No 12 
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M40, structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=100.00  E-value=0  Score=319.18  Aligned_cols=359  Identities=16%  Similarity=0.146  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC----CCCCEEEEEEECCC--CC
Q ss_conf             8999999999996178979886666666547999999999999983548841789753----89924899987379--98
Q T0607            15 WQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRL----KNRTPLLFMEIPGQ--ID   88 (471)
Q Consensus        15 ~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~----~~~~~~v~~~~~g~--~~   88 (471)
                      ++|+++++|++||+|||+|++          +.+++++|+++|+++   |+++...+.    .++.+||+++++|+  +.
T Consensus         4 n~~~l~~~l~~lv~i~s~s~~----------e~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~gnv~a~~~g~~~~~   70 (373)
T 3gb0_A            4 NQERLVNEFMELVQVDSETKF----------EAEICKVLTKKFTDL---GVEVFEDDTMAVTGHGAGNLICTLPATKDGV   70 (373)
T ss_dssp             CHHHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHHHHT---TCEEEECSCHHHHCCSSCCEEEEECCSSTTC
T ss_pred             CHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCEEEEEECCCCCCC
T ss_conf             989999999998169997918----------999999999999977---9979995055335688740999985678999


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf             879997340323288776778886354334542135642----2242035899999887631478777368998156433
Q T0607            89 DTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGG----ADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEES  164 (471)
Q Consensus        89 ~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~----~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~  164 (471)
                      |+|+|++||||||+++.|       +....+++++|||.    .|||+++++++.+++.+++.+.+.+++.++|+++||.
T Consensus        71 p~I~l~~H~DtV~~~~~~-------~~~~~~g~i~~~g~~~~g~d~kg~~a~~l~a~~~l~~~~~~~~~i~~~~~~~EE~  143 (373)
T 3gb0_A           71 DTIYFTSHMDTVVPGNGI-------KPSIKDGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNIPHGTIEFIITVGEES  143 (373)
T ss_dssp             CCEEEEEECCBCSSCSSC-------CCEEETTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEESCGGG
T ss_pred             CEEEEECCCCCCCCCCCE-------EEECCCCEEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             889997434637889984-------4420255287057356134654338999999988652355666428998433234


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             64469999999776428960899768777687765588851023688889864477634456774147899999999999
Q T0607           165 GSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISR  244 (471)
Q Consensus       165 G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~  244 (471)
                      |+.++..+...    ....++.+..++.   .....+.++.+|...+.+++.+.  ..|++..++...+++..+.+++..
T Consensus       144 g~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~--~~h~g~~~~~~~~ai~~~~~~l~~  214 (373)
T 3gb0_A          144 GLVGAKALDRE----RITAKYGYALDSD---GKVGEIVVAAPTQAKVNAIIRGK--TAHAGVAPEKGVSAITIAAKAIAK  214 (373)
T ss_dssp             TSHHHHHSCGG----GCCCSEEEEEEEC---SCTTEEEEEECEEEEEEEEEECB--CCBTTTCGGGSBCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHH----HCCCCCEEEEECC---CCCCEEEEEECCCEEEEEEEECC--CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             66316888654----2354405776326---75425899531200358999356--554456854473999999999995


Q ss_pred             HHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCC
Q ss_conf             74002450213310144430008999999863345556542111001232001012333322100120130210005785
Q T0607           245 IEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIAD  324 (471)
Q Consensus       245 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~  324 (471)
                      +....                                                       .....+.+++.+.    ++.
T Consensus       215 l~~~~-------------------------------------------------------~~~~~t~~v~~~~----gg~  235 (373)
T 3gb0_A          215 MPLGR-------------------------------------------------------IDSETTANIGRFE----GGT  235 (373)
T ss_dssp             SCCEE-------------------------------------------------------EETTEEEEEEEEE----ECS
T ss_pred             CHHCC-------------------------------------------------------CCCCCEEEECEEE----CCC
T ss_conf             51215-------------------------------------------------------6689632403144----463


Q ss_pred             CCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             1303547489999751278788899999999999973236-633899983157677668998889999999999983697
Q T0607           325 AGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY-NAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDK  403 (471)
Q Consensus       325 ~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  403 (471)
                      ..|+||++|++.+|+|+.+..+.+++.+.+++.+...... ...++++... ..+++..++ ++.+.+++++++++++..
T Consensus       236 ~~n~ip~~~~~~~diR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~~~~~~~~~~g~~  313 (373)
T 3gb0_A          236 QTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHADVEVNV-MYPGFKFAD-GDHVVEVAKRAAEKIGRT  313 (373)
T ss_dssp             CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EECCEECCT-TCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCC-CHHHHHHHHHHHHHHCCC
T ss_conf             245446713899999735402699999999999999887609669999962-244332467-569999999999985999


Q ss_pred             CCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             652344277655689999861899899968778666756777600489999999999999999971
Q T0607           404 PAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ  469 (471)
Q Consensus       404 ~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~  469 (471)
                      +...+..||  +|++.+...  |+|++.+||+.  .++|+|||+++++++.+++++|+.+|.+|++
T Consensus       314 ~~~~~~~gg--tDa~~~~~~--Gip~v~~g~~~--~~~H~~~E~i~i~~~~~~~~~~~~~i~~l~k  373 (373)
T 3gb0_A          314 PSLHQSGGG--SDANVIAGH--GIPTVNLAVGY--EEIHTTNEKIPVEELAKTAELVVAIIEEVAK  373 (373)
T ss_dssp             CEEEECSSC--CHHHHHHHT--TCCEEEEECCC--BSTTSTTCEEEHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEEE--CHHHHHHHC--CCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC
T ss_conf             668764357--689999876--99999988798--8876888298999999999999999999649


No 13 
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, protease, zinc, structural genomics; HET: SUC; 1.55A {Bacillus anthracis}
Probab=100.00  E-value=0  Score=317.73  Aligned_cols=383  Identities=16%  Similarity=0.106  Sum_probs=274.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             88999999999889999999999961789798866666665479999999999999835488417897538992489998
Q T0607             3 KPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFME   82 (471)
Q Consensus         3 ~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~   82 (471)
                      +.+.+++-+ +..+|++|++|++||+|||+|+......|..+.+.++++++.++|+++   |++...+   +..+||+++
T Consensus        14 ~~enl~~~~-~~~~~~~i~~l~~~v~i~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~l---G~~~~~~---d~~gnv~a~   86 (434)
T 3ife_A           14 GTENLYFQS-NAMKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEV---GLTEVTM---DDNGYVMAT   86 (434)
T ss_dssp             -----CHHH-HHHHHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHH---TCEEEEE---CTTSCEEEE
T ss_pred             CHHHHHHHH-HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEE---CCCCEEEEE
T ss_conf             688999999-887999999999764337766887678999878999999999999977---9977998---899769999


Q ss_pred             ECCC---CCCEEEEECCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCC----CC
Q ss_conf             7379---988799973403232887767--------------------------78886354334542135642----22
Q T0607            83 IPGQ---IDDTVLLYGHLDKQPEMSGWS--------------------------DDLHPWKPVLKNGLLYGRGG----AD  129 (471)
Q Consensus        83 ~~g~---~~~~i~l~~H~DvVp~~~~~~--------------------------w~~~Pf~~~~~~~~~~GrG~----~D  129 (471)
                      ++|+   +.|+|+|++|+||||++++|.                          |.++||...+.+++++|||+    +|
T Consensus        87 ~~g~~~~~~p~i~~~~H~DvVP~g~~~~~~P~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~D  166 (434)
T 3ife_A           87 LPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGAD  166 (434)
T ss_dssp             ECCBSSSCCCCEEEEEECCBCTTSCCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHH
T ss_pred             ECCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCEEEEHHCCCCCCCCCCCEEEECCCCEEECCC
T ss_conf             73668898877999611321377898764862644135740321554320331210677555214307976874121456


Q ss_pred             CCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf             420358999998876314787-7736899815643364469999999776428960899768777687765588851023
Q T0607           130 DGYSAYASLTAIRALEQQGLP-YPRCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGN  208 (471)
Q Consensus       130 ~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~  208 (471)
                      ||+++++++.+++.+.+.+.. .+++.++|+++||.|. |+..+...   .+. .++.+..+++    ....++++.+|.
T Consensus       167 ~k~~~~~~l~a~~~~~~~~~~~~~~i~~~~~~dEE~g~-g~~~~~~~---~~~-~~~~~v~~~~----~~~~~~~~~~g~  237 (434)
T 3ife_A          167 DKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIGR-GPAHFDVE---AFG-ASFAYMMDGG----PLGGLEYESFNA  237 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGGGTC-TGGGCCHH---HHC-CSEEEECCCC----STTEEECCBCEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-HHHHHHHH---HHH-CCEEEEEECC----CCCCCCEECEEE
T ss_conf             46779999999999986326889868999964633362-48999876---310-3047999437----876534003168


Q ss_pred             EEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68888986447763445677414789999999999974002450213310144430008999999863345556542111
Q T0607           209 LVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWI  288 (471)
Q Consensus       209 ~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (471)
                      .+++++++|.+  +||+..+..+.|++..+++++..+........                                   
T Consensus       238 ~~~~i~v~G~~--~Hag~~p~~g~nai~~~~~~i~~l~~~~~~~~-----------------------------------  280 (434)
T 3ife_A          238 AGAKLTFNGTN--THPGTAKNKMRNATKLAMEFNGHLPVEEAPEY-----------------------------------  280 (434)
T ss_dssp             EEEEEEEECBC--CCGGGCTTTCBCHHHHHHHHHHTSCTTCSGGG-----------------------------------
T ss_pred             EEEEEEEEEEC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-----------------------------------
T ss_conf             89999999866--86576865336899999999999876236654-----------------------------------


Q ss_pred             HHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CC
Q ss_conf             0012320010123333221001201302100057851303547489999751278788899999999999973236--63
Q T0607           289 DSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY--NA  366 (471)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~--~~  366 (471)
                                          .+...+..     .++..|.++..+.+.+++|.....+.+...+.+++.+++....  ..
T Consensus       281 --------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~  335 (434)
T 3ife_A          281 --------------------TEGYEGFY-----HLLSLNGDVEQSKAYYIIRDFDRKNFEARKNTIENIVKQMQEKYGQD  335 (434)
T ss_dssp             --------------------CCTTCCEE-----EEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             --------------------CCCCCCEE-----CCCEEECCEEECEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             --------------------55777642-----68333111020113103146650109999999999999999866676


Q ss_pred             EEEEEEEECC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             3899983157-677668998889999999999983697652344277655689999861899899968778666756777
Q T0607           367 KVDFKIQNGG-SKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPN  445 (471)
Q Consensus       367 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~  445 (471)
                      .++++..... .+++..+.+++ +.+++++++++++..+...+..||  +|++.|...  |+|++.|||+.  .++|+||
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~a~~~~g~~~~~~~~~gg--tDa~~~~~~--gip~v~~Gpg~--~~~H~~n  408 (434)
T 3ife_A          336 AVVLEMNDQYYNMLEKIEPVRE-IVDIAYEAMKSLNIEPNIHPIRGG--TDGSQLSYM--GLPTPNIFTGG--ENYHGKF  408 (434)
T ss_dssp             GEEEEEEEEECCTHHHHGGGTH-HHHHHHHHHHHTTCCCEECCBSSC--CHHHHHHHT--TCCCCEECCSE--ESTTSTT
T ss_pred             EEEEEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEEEEE--CHHHHHHHC--CCCEEEECCCC--CCCCCCC
T ss_conf             3899996653377787798889-999999999982999768775358--789999876--99999988898--8874887


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6004899999999999999999713
Q T0607           446 EFLHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       446 E~~~i~~l~~~~~il~~~l~~la~~  470 (471)
                      ||++++++.+++++|+++|.+|++|
T Consensus       409 E~i~i~dl~~~~~i~~~~i~~~~~~  433 (434)
T 3ife_A          409 EYVSVDVMEKAVQVIIEIARRFEEQ  433 (434)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHCC
T ss_conf             1688999999999999999999735


No 14 
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20/M25/M40, structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00  E-value=0  Score=317.69  Aligned_cols=346  Identities=16%  Similarity=0.141  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEE--CCCCCC
Q ss_conf             998899999999999617897988666666654799999999999998354884178975389924899987--379988
Q T0607            12 CQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEI--PGQIDD   89 (471)
Q Consensus        12 ~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~--~g~~~~   89 (471)
                      .+..+++.|++|++||+|||+|++          +.+++++|.+||+++|   ++++..   ++  +++..+  .+++.|
T Consensus         6 i~~~~~e~v~~l~~Lv~ipS~s~~----------e~~~~~~i~~~l~~~G---~~~~~~---~~--~~~~~~~~~~~~~p   67 (356)
T 3ct9_A            6 IPTMTAEAVSLLKSLISIPSISRE----------ETQAADFLQNYIEAEG---MQTGRK---GN--NVWCLSPMFDLKKP   67 (356)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHHHHTT---CCEEEE---TT--EEEEECSSCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEEE---CC--CEEEEEECCCCCCC
T ss_conf             767189999999999579999988----------8999999999999779---856982---69--88999855689998


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-H
Q ss_conf             799973403232887767788863543345421356422242035899999887631478777368998156433644-6
Q T0607            90 TVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSY-D  168 (471)
Q Consensus        90 ~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~-g  168 (471)
                      +|+|++|+||||+++  .|+++||+++++++++||||+.|||+++++.+.+++.+++.+.. .++.+++..+||.++. +
T Consensus        68 ~i~~~~H~DtVp~~~--~w~~~Pf~~~~~~~~i~grG~~D~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~ee~~g~~~  144 (356)
T 3ct9_A           68 TILLNSHIDTVKPVN--GWRKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQLCRTSQN-YNLIYLASCEEEVSGKEG  144 (356)
T ss_dssp             EEEEEEECCBCCCC---------CCCEECSSEEESTTTTTTHHHHHHHHHHHHHHTTSCCS-SEEEEEEECCGGGTCTTT
T ss_pred             EEEEECCCCCCCCCC--CCCCCCCCCEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEECCCEEECCCCCCC
T ss_conf             799984678467887--77579963301252687235566654167999999986652343-035540415531334576


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999997764289608997687776877655888510236888898644776344567741478999999999997400
Q T0607           169 LPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDE  248 (471)
Q Consensus       169 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~  248 (471)
                      ...++.    .....++.+..+     +....+.+|+||.++++++++|..  +||+....  .|++..+++++..+...
T Consensus       145 ~~~~~~----~~~~~~~~~~~~-----~~~~~i~~g~~G~~~~~i~v~G~~--~Hs~~~~~--~nai~~~~~~~~~l~~~  211 (356)
T 3ct9_A          145 IESVLP----GLPPVSFAIVGE-----PTEMQPAIAEKGLMVLDVTATGKA--GHAARDEG--DNAIYKVLNDIAWFRDY  211 (356)
T ss_dssp             HHHHGG----GSCCCSEEEECC-----SBTTCCEEEECCCEEEEEEEECBC--CBTTSSCC--BCTTGGGHHHHHHHHHC
T ss_pred             CCHHHH----CCCCCCEEEECC-----CCCCCCCCCCCEEEEEEEEEEECC--CCCCCCCC--CCHHHHHHHHHHHHHHH
T ss_conf             301121----146665478646-----655441012646899999988677--33588532--48599999999999864


Q ss_pred             CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCE
Q ss_conf             24502133101444300089999998633455565421110012320010123333221001201302100057851303
Q T0607           249 NTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNV  328 (471)
Q Consensus       249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nv  328 (471)
                      ......                                                 .....++.+++.|.+    +.+.|+
T Consensus       212 ~~~~~~-------------------------------------------------~~~~~~~~~~~~i~g----G~~~nv  238 (356)
T 3ct9_A          212 RFEKES-------------------------------------------------PLLGPVKMSVTVINA----GTQHNV  238 (356)
T ss_dssp             CCSCCB-------------------------------------------------TTTBSCEEEEEEEEE----CSSTTB
T ss_pred             HCCCCC-------------------------------------------------CCCCCCEEEEEEEEC----CCCCCC
T ss_conf             304478-------------------------------------------------765563010038932----776676


Q ss_pred             ECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             54748999975127878889999999999997323663389998315767766899888999999999998369765234
Q T0607           329 MRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYM  408 (471)
Q Consensus       329 ip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  408 (471)
                      ||++|++++|+|+.+..+.+++.+.+++.+....        .......++...+.++|++.++.+ +    .  .....
T Consensus       239 Ip~~~~~~~~~R~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~-~----~--~~~~g  303 (356)
T 3ct9_A          239 VPDKCTFVVDIRSNELYSNEDLFAEIRKHIACDA--------KARSFRLNSSRIDEKHPFVQKAVK-M----G--RIPFG  303 (356)
T ss_dssp             CCSEEEEEEEEECCTTCCHHHHHHHHHHHCCSEE--------EESCSCSCCEECCTTSHHHHHHHH-T----T--CCCEE
T ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH--------HHCCCEECCCCCCCCCHHHHHHHH-H----C--CEEEE
T ss_conf             8631389988842898889999999999877664--------312210001356876889999985-2----4--14320


Q ss_pred             ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             42776556899998618998999687786667567776004899999999999999999
Q T0607           409 GEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF  467 (471)
Q Consensus       409 ~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l  467 (471)
                      ..+|+  +++     ..++|++.||||.. .++|+||||+++++|.+++++|.++|..|
T Consensus       304 ~~~~~--d~~-----~~g~~~v~~Gpg~~-~~~H~~dE~v~i~~l~~~~~v~~~~l~~L  354 (356)
T 3ct9_A          304 SPTLS--DQA-----LMSFASVKIGPGRS-SRSHTAEEYIMLKEIEEAIGIYLDLLDGL  354 (356)
T ss_dssp             ECSCC--GGG-----GCCSCEEECCSSBG-GGTTSTTCEEEHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHH--HHH-----HCCCCEEEECCCCC-CCCCCCCCEEEHHHHHHHHHHHHHHHHHC
T ss_conf             16576--687-----63999899999875-66879986099999999999999999720


No 15 
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=100.00  E-value=2.6e-37  Score=247.69  Aligned_cols=369  Identities=14%  Similarity=0.126  Sum_probs=254.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEE
Q ss_conf             98899999999999617897988666666654799999999999998354884178975389924899987379-98879
Q T0607            13 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTV   91 (471)
Q Consensus        13 ~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i   91 (471)
                      ++..+++|+.-++|-++|.+|.+          |.+.++++++||+++   |+++  .+..+...+++++++|. ++|+|
T Consensus        28 ~~~~~~li~~rr~lh~~PEl~~~----------E~~ta~~i~~~L~~~---G~~v--~~~~~~~t~vva~l~g~~~gp~i   92 (404)
T 1ysj_A           28 KAFHTRLINMRRDLHEHPELSFQ----------EVETTKKIRRWLEEE---QIEI--LDVPQLKTGVIAEIKGREDGPVI   92 (404)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCTTC----------CHHHHHHHHHHHHHT---TCEE--CCCTTCSSCEEEEEECSSCCCEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHC---CCCE--EEECCCCCEEEEEEECCCCCCEE
T ss_conf             99999999999999968687880----------899999999999988---9918--99659988799999089989869


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf             99734032328877677888635433454213564222420358999998876314787773689981564336446999
Q T0607            92 LLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPF  171 (471)
Q Consensus        92 ~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~  171 (471)
                      +|.+|||+||..+   |+.+||... .+|.+|++|..+++..+++++.+++..+.  ...+++.++|+++||.++ |+..
T Consensus        93 ~l~ah~DaVP~~e---~~~~p~~~~-~~G~~h~cG~~~~~a~~l~~~~~l~~~~~--~~~g~v~~if~p~EE~~~-G~~~  165 (404)
T 1ysj_A           93 AIRADIDALPIQE---QTNLPFASK-VDGTMHACGHDFHTASIIGTAMLLNQRRA--ELKGTVRFIFQPAEEIAA-GARK  165 (404)
T ss_dssp             EEEEECCCBSCCC---CCCCTTCCS-STTCBCTTSHHHHHHHHHHHHHHHHTCGG--GCSSEEEEEEESCTTTTC-HHHH
T ss_pred             EEEEECCCCCCCC---CCCCCCCCC-CCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCC-CCHH
T ss_conf             9998775587745---668875301-08854055554331157888888888752--579858998226433222-1024


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCC-CCCCCEE--EEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99997764289608997687776-8776558--88510236888898644776344567741478999999999997400
Q T0607           172 YIELLKERIGKPSLVICLDSGAG-NYEQLWM--TTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDE  248 (471)
Q Consensus       172 ~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~i--~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~  248 (471)
                      ++...  .+...++++....... ..+....  ....++..+++++++|++.  |++. +..+.|++.++..++..+...
T Consensus       166 ~i~~g--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~v~~~Gk~a--Has~-P~~g~nai~a~~~~i~~l~~~  240 (404)
T 1ysj_A          166 VLEAG--VLNGVSAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGG--HASI-PNNSIDPIAAAGQIISGLQSV  240 (404)
T ss_dssp             HHHTT--TTTTEEEEEEEEEETTSCTTEEEECSEEEECCEEEEEEEEECC-----------CCCCHHHHHHHHHHHHC--
T ss_pred             HHHCC--CCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCCC--CCCC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf             77626--543111365214678987742674257543332499999947887--8664-645420678999999999863


Q ss_pred             CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCE
Q ss_conf             24502133101444300089999998633455565421110012320010123333221001201302100057851303
Q T0607           249 NTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNV  328 (471)
Q Consensus       249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nv  328 (471)
                      .....                                                  ......+++++.+.    ++.+.|+
T Consensus       241 ~~~~~--------------------------------------------------~~~~~~~v~~~~i~----gG~~~Nv  266 (404)
T 1ysj_A          241 VSRNI--------------------------------------------------SSLQNAVVSITRVQ----AGTSWNV  266 (404)
T ss_dssp             -----------------------------------------------------------CCEEEEEEEE----ECSCSSS
T ss_pred             HCCCC--------------------------------------------------CCCCCCCCCEEEEE----CCCCCEE
T ss_conf             10132--------------------------------------------------33553002059996----7974537


Q ss_pred             ECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             54748999975127878889999999999997323-66338999831576776689988899999999999836976523
Q T0607           329 MRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPP-YNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAY  407 (471)
Q Consensus       329 ip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  407 (471)
                      ||++|++++++|..+.++.+++.+++++.++.... .+.++++++.. .+|+..   +++.+.+.++++.++++......
T Consensus       267 IP~~a~l~~~iR~~~~e~~~~~~~~i~~~~~~~a~~~g~~~ei~~~~-~~p~~~---nd~~~~~~~~~~~~~~g~~~v~~  342 (404)
T 1ysj_A          267 IPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKWFP-YLPSVQ---NDGTFLNAASEAAARLGYQTVHA  342 (404)
T ss_dssp             CCSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EECCEE---ECGGGHHHHHHHHHHTTCEEEEC
T ss_pred             ECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCC---CCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             32420468760233167778888899887524533323343111233-478878---99999999999999848565358


Q ss_pred             EECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44277655689999861899899968778666756777600489999999999999999971
Q T0607           408 MGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ  469 (471)
Q Consensus       408 ~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~  469 (471)
                      ....|+ .|.++|.+..|++ .+.+|++.. ...|+|++.++.+-|..++++|+.+..++.+
T Consensus       343 ~~~~gs-eDf~~~~~~vP~~-~~~iG~g~~-~~~H~p~f~~de~~l~~g~~~~~~lal~~L~  401 (404)
T 1ysj_A          343 EQSPGG-EDFALYQEKIPGF-FVWMGTNGT-EEWHHPAFTLDEEALTVASQYFAELAVIVLE  401 (404)
T ss_dssp             CCBSSC-CTHHHHHTTSCEE-EEEEECCCS-SCTTCTTCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC-CHHHHHHHHHCEE-EEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             998781-1699998762879-999918999-8677988807989999999999999999986


No 16 
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=100.00  E-value=4.1e-35  Score=234.12  Aligned_cols=382  Identities=10%  Similarity=0.032  Sum_probs=260.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC------------
Q ss_conf             99999999988999999999996178979886666666547999999999999983548841789753------------
Q T0607             5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRL------------   72 (471)
Q Consensus         5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~------------   72 (471)
                      .++.+|| +++++++++.-+.|-++|-+|.+          |.+.+++++++|+++   |++++....            
T Consensus         3 ~~~~~~~-~~~~~~l~~~rr~lH~~PEls~~----------E~~T~~~i~~~L~~~---G~~v~~~~~~~~~~~~~~~~~   68 (445)
T 3io1_A            3 LQLDEYL-RQLAPSMTQWRRDFHLHAESGWL----------EFRTASKVADILDGL---GYQLALGRDVIDADSRMGLPD   68 (445)
T ss_dssp             CCHHHHH-HTTHHHHHHHHHHHHHTCCCTTC----------CHHHHHHHHHHHHHT---TCEEEEGGGTSCSTTCCSCCC
T ss_pred             CHHHHHH-HHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHHHHC---CCEEEECCCCCCCCCCCCCCC
T ss_conf             5699999-98789999999999858787882----------599999999999978---996786455555311136653


Q ss_pred             ------------------------CCCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ------------------------8992489998737-998879997340323288776778886354334542135642
Q T0607            73 ------------------------KNRTPLLFMEIPG-QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGG  127 (471)
Q Consensus        73 ------------------------~~~~~~v~~~~~g-~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~  127 (471)
                                              .++...|++++.+ +.+|+|+|.+|||+||..+...|   ||.+..++...+++|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~tgvva~l~~g~~gp~I~l~ah~DalPv~e~~~~---~~~p~~~~~~~~~~G~  145 (445)
T 3io1_A           69 EETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRPGPTLAFRVDMDALDLNEQHDD---SHRPHRDHFASCNAGM  145 (445)
T ss_dssp             HHHHHHHHHHHHTTTCCTTTGGGGTTTCCCEEEEEECSSCCCEEEEEEECCCCCC-------------------------
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCC---CCCCEECCCCCCCCCC
T ss_conf             1000000000111356532233346776179999818898998999988771776235789---8774010233478885


Q ss_pred             CCCCH---HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCEE-
Q ss_conf             22420---35899999887631478-77736899815643364469999999776428960899768777687-76558-
Q T0607           128 ADDGY---SAYASLTAIRALEQQGL-PYPRCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNY-EQLWM-  201 (471)
Q Consensus       128 ~D~k~---~~~~~l~a~~~l~~~~~-~~~~~~~~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~i-  201 (471)
                      .+++|   ..++++.+++.+.+... ..+.+.++|+++||.++ |...++..  ..+...|.++........+ +.... 
T Consensus       146 ~hacGhd~~~a~~l~a~~~l~~~~~~~~g~v~l~~~~~EE~~~-g~~~~i~~--~~~~~~d~v~~~h~~~~~~~g~v~~~  222 (445)
T 3io1_A          146 MHACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTR-GARAMVAA--GVVDDVDYFTAIHIGTGVPAGTVVCG  222 (445)
T ss_dssp             ---CTTCTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTTTC-HHHHHHHT--TTTTTCSEEEEEEEEEEEETTBEESC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-CHHHHHHH--CCCCCCCCEEEEECCCCCCCCEEEEC
T ss_conf             0068872899999999999986136679679996303455663-26999973--65545550267411347877427625


Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             88510236888898644776344567741478999999999997400245021331014443000899999986334555
Q T0607           202 TTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQV  281 (471)
Q Consensus       202 ~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  281 (471)
                      ....+|..++++++.|.+.  |++..+..+.|++.++++++..+.......                             
T Consensus       223 ~g~~~g~~~~~i~~~G~~a--H~as~P~~g~nAi~~aa~~i~~l~~~~~~~-----------------------------  271 (445)
T 3io1_A          223 GDNFMATTKFDVQFSGVAA--HAGGKPEDGRNALLAAAQAALGLHAIPPHS-----------------------------  271 (445)
T ss_dssp             CCCBCEEEEEEEEEECCCS--STTCCGGGCCCHHHHHHHHHHHHHTCCCBT-----------------------------
T ss_pred             CCCCCCCEEEEEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_conf             7753222158999987735--676687345557889999999999987525-----------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             65421110012320010123333221001201302100057851303547489999751278788899999999999973
Q T0607           282 YSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQN  361 (471)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~  361 (471)
                                              ....+++++.+    +++.+.||||++|++++++|..+.++.+.+.+++++.++.+
T Consensus       272 ------------------------~~~~~~~~g~i----~gG~~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~  323 (445)
T 3io1_A          272 ------------------------AGASRVNVGVM----QAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVAGA  323 (445)
T ss_dssp             ------------------------TBCEEEEEEEE----EECSCTTSCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEEEEEE----ECCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             ------------------------77649999998----53556752897458999961588899899999999999999


Q ss_pred             CC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC----CEEECCCCHHHHHHHHHHHCCCC--EEEECC
Q ss_conf             23-663389998315767766899888999999999998369765----23442776556899998618998--999687
Q T0607           362 PP-YNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPA----AYMGEGGTIPFMSMLGEQFPKAQ--FMITGV  434 (471)
Q Consensus       362 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~gGt~~~~~~~~~~~~~~p--~~~~G~  434 (471)
                      +. .+.++++++... ++|..   +++.+.+.++++.+++.+.+.    ..+..|+  .|.++|.+.+|..+  ...+++
T Consensus       324 a~~~g~~~ei~~~~~-~pp~~---~d~~~~~~~~~~a~~~~g~~~~~~~~~~~~gs--eDf~~~~~~vp~~~~~~~~~~~  397 (445)
T 3io1_A          324 AAMYEARYELRMMGA-ATASA---PSPAWVDYLREQAARVPGVQQAVDRIAAPAGS--EDATLMMARVQARGGLASYMIF  397 (445)
T ss_dssp             HHHTTCEEEEEEEEE-ECCCC---CCHHHHHHHHHHHHHSTTCCBCBSSCCCCCBC--CTHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHCCEEEEEEEEC-CCCCC---CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCEEEEEEE
T ss_conf             999797699999857-88977---99999999999999852942232668898273--3899999970734634899995


Q ss_pred             CCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             786-6675677760048999999999999999997139
Q T0607           435 LGP-HSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       435 g~~-~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      |.. ....|+|+-.++-+.+..++++|+++...|..++
T Consensus       398 g~~~~~~lH~p~f~~dE~~l~~G~~~~a~~aldyl~~~  435 (445)
T 3io1_A          398 GTELSAGHHNEKFDFDESVMAVAVETLARVALNFPWQR  435 (445)
T ss_dssp             EEEC-----------CCCHHHHHHHHHHHHHHTCCSCC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79998578898996898999999999999999998875


No 17 
>1z2l_A Allantoate amidohydrolase; ALLC, purine catabolism, allantoin utilization, structural genomics, PSI, protein structure initiative; HET: 1AL; 2.25A {Escherichia coli K12} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A
Probab=100.00  E-value=2.2e-36  Score=242.00  Aligned_cols=383  Identities=11%  Similarity=0.042  Sum_probs=235.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCC--CCE
Q ss_conf             988999999999996178979886666666547999999999999983548841789753899248999873799--887
Q T0607            13 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQI--DDT   90 (471)
Q Consensus        13 ~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~--~~~   90 (471)
                      .++++++-++|.+|.++.+.+.....+.+.++.+.++++||+++|+++   |+++++    +..+||+++++|++  +|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~s~~e~~a~~~l~~~l~~~---G~ev~~----D~~GNvia~~~G~~~~~p~   77 (423)
T 1z2l_A            5 THFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAAS---GLETRF----DEVGNLYGRLNGTEYPQEV   77 (423)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHT---TCEEEE----CTTSCEEEEECCSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECCCCCCCCE
T ss_conf             468999999999998548999997406858999999999999999977---998998----7883799997568999988


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE--EEEEC-------C
Q ss_conf             99973403232887767788863543345421356422242035899999887631478777368--99815-------6
Q T0607            91 VLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCI--LIIEA-------C  161 (471)
Q Consensus        91 i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~--~~~~~-------~  161 (471)
                      |+|++||||||++...+|+.+||.+...++.++++|..|+|+.....+.+.+.............  -....       +
T Consensus        78 i~l~gH~DvVP~gg~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (423)
T 1z2l_A           78 VLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICD  157 (423)
T ss_dssp             EEEEEECCCCTTBCSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHHHHHTTCCCGGGTSSCCC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCHHHEECHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             99979735189998636765643031011102103777888811000122100100110122310110110210001122


Q ss_pred             CCCCCHHHHHHHHHH-----HHHCCCCEE-----EEECCCC--CCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCC-CC
Q ss_conf             433644699999997-----764289608-----9976877--7687765588851023688889864477634456-77
Q T0607           162 EESGSYDLPFYIELL-----KERIGKPSL-----VICLDSG--AGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGS-AS  228 (471)
Q Consensus       162 EE~G~~g~~~~~~~~-----~~~~~~~d~-----~~~~~~~--~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~-~~  228 (471)
                      ......+. ......     .......+.     .....+.  ...........+.+|..++.+++.+...  |++. ..
T Consensus       158 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~  234 (423)
T 1z2l_A          158 AKGNSFVD-AMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESN--HAGTTPM  234 (423)
T ss_dssp             SSSCCHHH-HHHHTTCCCCSSCCCCCCCEEEEEEEEECCSSHHHHTTCCEEEEEEECEEEEEEEEEECCCE--ETTTSCG
T ss_pred             CCCCCHHH-HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCEEEEEECCCEEEEEEEEECCC--CCCCCCH
T ss_conf             45652133-44530466210013554443345540224665200025552135430230368999970123--4543210


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             41478999999999997400245021331014443000899999986334555654211100123200101233332210
Q T0607           229 GIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWR  308 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (471)
                      ....++..++.+....+.....                                                     .....
T Consensus       235 ~~~~~a~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~  261 (423)
T 1z2l_A          235 GYRRDTVYAFSRICHQSVEKAK-----------------------------------------------------RMGDP  261 (423)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHH-----------------------------------------------------HHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------HHCCC
T ss_conf             1346788888999999998875-----------------------------------------------------32222


Q ss_pred             EEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCCCCCCCH
Q ss_conf             01201302100057851303547489999751278788899999999999973236-63389998315767766899888
Q T0607           309 PALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY-NAKVDFKIQNGGSKGWNAPLLSD  387 (471)
Q Consensus       309 ~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~  387 (471)
                      .......+   ..++...|++|+.+.+.+++|..+..+.+.+.+.+++.+.+.... ...+.++....   .+..+ .++
T Consensus       262 ~~~~~~~~---~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~d~  334 (423)
T 1z2l_A          262 LVLTFGKV---EPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMD---EEPVP-MNK  334 (423)
T ss_dssp             CEEECCCE---EEESCCTTEECCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---ECCEE-CCH
T ss_pred             CCCCCEEE---ECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCC-CCH
T ss_conf             34421255---215565554443058997124671776678888999986542002475312211036---88989-998


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999999998369765234427765568999986189989-9968778666756777600489999999999999999
Q T0607           388 WLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQF-MITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYS  466 (471)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~-~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~  466 (471)
                      .+++++++++++++..++..++.||  +|++.|++.   +|+ +.|||+. ++.+|+||||++++++.+++++|+.+|.+
T Consensus       335 ~lv~~~~~a~~~~g~~~~~~~sggg--TDa~~~~~~---~p~~~~fgPg~-~~~aH~p~E~v~v~~l~~~~~ila~~i~~  408 (423)
T 1z2l_A          335 ELVATLTELCEREKLNYRVMHSGAG--HDAQIFAPR---VPTCMIFIPSI-NGISHNPAERTNITDLAEGVKTLALMLYQ  408 (423)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEESSC--CTHHHHTTT---SCEEEEEECCG-GGCCSSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHCC---CCEEEEEECCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999973999658403266--099998641---98899996489-87868956042899999999999999999


Q ss_pred             HHHCC
Q ss_conf             97139
Q T0607           467 FSQKK  471 (471)
Q Consensus       467 la~~~  471 (471)
                      ||.|+
T Consensus       409 La~~~  413 (423)
T 1z2l_A          409 LAWQK  413 (423)
T ss_dssp             HHSCC
T ss_pred             HHHHH
T ss_conf             86315


No 18 
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, complex with N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=100.00  E-value=9.4e-35  Score=231.89  Aligned_cols=361  Identities=11%  Similarity=0.091  Sum_probs=232.8

Q ss_pred             HHHHHHHHHHH-HCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-
Q ss_conf             99999999999-6178979-------88666666654799999999999998354884178975389924899987379-
Q T0607            16 QEEILPSLCDY-IKIPNKS-------PHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-   86 (471)
Q Consensus        16 ~~~~i~~l~~l-v~ipS~s-------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-   86 (471)
                      .+++.+.|.+. .+|....       ...-.+...++.+.++++||.+||+++   |+++++    |..+||+++++|+ 
T Consensus        31 ~~rl~~~~~~~~~~~g~~~~~~~~~~~~g~~R~a~t~~d~~~r~~l~~~l~~l---Gl~v~v----D~~GNv~a~~~G~~  103 (474)
T 2v8h_A           31 SGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESL---GCKVKV----DKIGNMFAVYPGKN  103 (474)
T ss_dssp             TTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHT---TCEEEE----BTTCCEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECCCC
T ss_conf             89999999999986087544577889997522549999999999999999977---997999----37833999966789


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCC
Q ss_conf             98879997340323288776778886354334542135642224203589999988763147877-73689981564336
Q T0607            87 IDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESG  165 (471)
Q Consensus        87 ~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G  165 (471)
                      ++|+|+|.|||||||.|                      |..|+..++++.+.+++.+++.+..+ .++.+++..+||.+
T Consensus       104 ~~p~I~lgsHlDTVP~G----------------------G~~DG~~gV~a~le~lr~l~~~g~~~~~~i~~i~~~~EEg~  161 (474)
T 2v8h_A          104 GGKPTATGSHLDTQPEA----------------------GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGA  161 (474)
T ss_dssp             CCSCEEEEECCCCCSSB----------------------CSSTTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSCS
T ss_pred             CCCEEEEECCCCCCCCC----------------------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf             99868994874417999----------------------87567543055799999887618767877435553033444


Q ss_pred             CH-----HHHHHH-----HHHHHHCCC-----------------------------CE-E--EEECCCCCC--CCCCCEE
Q ss_conf             44-----699999-----997764289-----------------------------60-8--997687776--8776558
Q T0607           166 SY-----DLPFYI-----ELLKERIGK-----------------------------PS-L--VICLDSGAG--NYEQLWM  201 (471)
Q Consensus       166 ~~-----g~~~~~-----~~~~~~~~~-----------------------------~d-~--~~~~~~~~~--~~~~~~i  201 (471)
                      ..     +...+.     .........                             .. +  ..++.+...  ......+
T Consensus       162 ~f~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~e~hieqg~vl~~~~~~~gv  241 (474)
T 2v8h_A          162 RFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGI  241 (474)
T ss_dssp             SSSCTTHHHHHHTTSSCHHHHHTCBCSSCSSCCBHHHHHHHHTCCCSBCSCTTTSCCSEEEEEEECCSSHHHHTTCSEEE
T ss_pred             CCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHCCCCCCE
T ss_conf             44643355213216546888844644467511449999986687654442246653006777530247412322677640


Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             8851023688889864477634456774147-899999999999740024502133101444300089999998633455
Q T0607           202 TTSLRGNLVGKLTVELINEGVHSGSASGIVA-DSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQ  280 (471)
Q Consensus       202 ~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  280 (471)
                      ..+..|..++.++++|...  |++..+.... ++..++.+++..+....                               
T Consensus       242 v~gi~g~~~~~~~~~G~~~--haGttPm~~r~dal~aa~~~~~~~~~~~-------------------------------  288 (474)
T 2v8h_A          242 VTGVQAYNWQKVTVHGVGA--HAGTTPWRLRKDALLMSSKMIVAASEIA-------------------------------  288 (474)
T ss_dssp             EEEECEEEEEEEEEECCCE--ETTTCCGGGCCCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             EEEEEEEEEEEEEEEECCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_conf             3664002675222241255--4666703221247999999999977642-------------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             56542111001232001012333322100120130210005785130354748999975127878889999999999997
Q T0607           281 VYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQ  360 (471)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~  360 (471)
                                              .....+.+++.+.   .++++.|+||++|++++|+|..+.+..+++.+.+++.+++
T Consensus       289 ------------------------~~~~~~~TvG~i~---~~p~a~NvIPg~v~~~vDiR~~~~e~l~~~~~~l~~~i~~  341 (474)
T 2v8h_A          289 ------------------------QRHNGLFTCGIID---AKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDR  341 (474)
T ss_dssp             ------------------------HHTTCEEECCCEE---EESCCTTEECSEEEEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------HCCCEEEECCEEE---CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             ------------------------0364157424053---2664435557469997630569989999999999999999


Q ss_pred             HCCC--CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             3236--633899983157677668998889999999999983-6976523442776556899998618998999687786
Q T0607           361 NPPY--NAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY-YDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGP  437 (471)
Q Consensus       361 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~  437 (471)
                      ....  ...++++++.....|+. + .++.+++++++++... .+.+...+.+|+ ++|+..+++   .+|+.++...+.
T Consensus       342 ~~~~~~~~~v~~~~e~~~~~p~v-~-~d~~lv~~v~~Aa~~~~~~~~~~~m~SGA-GhDA~~~a~---~~Pt~MiFvPs~  415 (474)
T 2v8h_A          342 LIKINDGGALSYESETLQVSPAV-N-FHEVCIECVSRSAFAQFKKDQVRQIWSGA-GHDSCQTAP---HVPTSMIFIPSK  415 (474)
T ss_dssp             HTTCCTTCCCEEEEEEEEEECCE-E-CCHHHHHHHHHHHHHHSCGGGEEEEEESS-CCTHHHHTT---TSCEEEEEECCG
T ss_pred             HHHHHCCCCEEEEEEEEECCCCC-C-CCHHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHC---CCCEEEEECCCC
T ss_conf             98874177237998983048987-8-79999999999999851699960516236-999999867---488999948685


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6675677760048999999999999999997139
Q T0607           438 HSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       438 ~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      ++.+|+|+||++++++.++++||+..|.+|.++|
T Consensus       416 ~GiSH~p~E~~~~ed~~~g~~VL~~~vl~~d~~~  449 (474)
T 2v8h_A          416 DGLSHNYYEYSSPEEIENGFKVLLQAIINYDNYR  449 (474)
T ss_dssp             GGCCSSTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9877990328899999999999999999997544


No 19 
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=100.00  E-value=1.2e-35  Score=237.33  Aligned_cols=186  Identities=17%  Similarity=0.226  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC--CCCEE
Q ss_conf             8899999999999617897988666666654799999999999998354884178975389924899987379--98879
Q T0607            14 QWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ--IDDTV   91 (471)
Q Consensus        14 ~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~--~~~~i   91 (471)
                      +.+++.|++|++||+|||+|++.        .+.+++++|++||+++   |+++++++..++++|++++++|.  +.|+|
T Consensus         7 ~~~~~~v~~l~~lv~i~S~sp~~--------~e~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~~~~~g~~~~~~~i   75 (198)
T 1q7l_A            7 EEEHPSVTLFRQYLRIRTVQPKP--------DYGAAVAFFEETARQL---GLGCQKVEVAPGYVVTVLTWPGTNPTLSSI   75 (198)
T ss_dssp             CCCCHHHHHHHHHHTSCCBTTSC--------CHHHHHHHHHHHHHHH---TCEEEEEEEETTEEEEEEEECCSSTTSCEE
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCC--------CHHHHHHHHHHHHHHC---CCEEEEEECCCCCEEEEEEEECCCCCCCEE
T ss_conf             11379999999996889999494--------8999999999999987---992899971799758999970689988869


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCC-HH
Q ss_conf             99734032328877677888635433-4542135642224203589999988763147877-736899815643364-46
Q T0607            92 LLYGHLDKQPEMSGWSDDLHPWKPVL-KNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESGS-YD  168 (471)
Q Consensus        92 ~l~~H~DvVp~~~~~~w~~~Pf~~~~-~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G~-~g  168 (471)
                      +|++|+||||+++ ..|+++||.+.. .|+++||||++|||+++++++++++.+++.+..+ .++.++|+++||.|+ .|
T Consensus        76 ll~~H~DtVp~~~-~~W~~~Pf~~~~~~dg~lyGRGa~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~gg~~g  154 (198)
T 1q7l_A           76 LLNSHTDVVPVFK-EHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQG  154 (198)
T ss_dssp             EEEEECCBCCCCG-GGCSSCTTTCCBCTTSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTT
T ss_pred             EEECCCCCCCCCC-CCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH
T ss_conf             9981555027766-677569963011135734278764575038999999999998299888758999986744373747


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCEEEEEEEEEEEEEE
Q ss_conf             99999997764289608997687776877-6558885102368888
Q T0607           169 LPFYIELLKERIGKPSLVICLDSGAGNYE-QLWMTTSLRGNLVGKL  213 (471)
Q Consensus       169 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~i~~g~kG~~~~~i  213 (471)
                      +.++++........+++++...  ..+++ .+.+++|+||.+|+++
T Consensus       155 ~~~l~~~~~~~~~~~~~~id~g--~~~p~~~~~v~~~~kG~~~~~v  198 (198)
T 1q7l_A          155 MELFVQRPEFHALRAGFALDEG--IANPTDAFTVFYSERSPWWVRV  198 (198)
T ss_dssp             HHHHTTSHHHHTTCEEEEEECC--CCCSSSSEEEEECCSSCGGGCC
T ss_pred             HHHHHHCHHHCCCCEEEEEECC--CCCCCCCCEEEEECCEEEEEEC
T ss_conf             9999847665289878999789--4389999879997135799979


No 20 
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG, AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=99.97  E-value=4.2e-28  Score=190.64  Aligned_cols=368  Identities=13%  Similarity=0.063  Sum_probs=228.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             99999999999617897988666666654799999999999998354884178975389924899987379988799973
Q T0607            16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG   95 (471)
Q Consensus        16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~   95 (471)
                      .|+++++-++|=+.|-+|.+          |.+.+++|+++|+++   |++++.-.  + ...+++.+.++.+|+|+|.+
T Consensus        27 ~~~li~~rr~lH~~PEl~~~----------E~~t~~~i~~~L~~~---G~~v~~~~--~-~tg~~a~~g~g~gp~i~~~a   90 (418)
T 1xmb_A           27 FDWMVKIRRKIHENPELGYE----------ELETSKLIRSELELI---GIKYRYPV--A-ITGVIGYIGTGEPPFVALRA   90 (418)
T ss_dssp             HHHHHHHHHHHHHSCCCTTC----------CHHHHHHHHHHHHHH---TCCEEEEE--T-TTEEEEEEESSSSCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHHHHC---CCEEEECC--C-CCEEEEEECCCCCCEEEEEE
T ss_conf             99999999999847586784----------899999999999987---99689768--8-83799998589998799970


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             40323288776778886354334542135642224203589999988763147-87773689981564336446999999
Q T0607            96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQG-LPYPRCILIIEACEESGSYDLPFYIE  174 (471)
Q Consensus        96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~-~~~~~~~~~~~~~EE~G~~g~~~~~~  174 (471)
                      |||+||..+.+.|++.+..    .+..+   +++..+..++++.+++.+.+.. ...++++++|+++||.+. |+..+++
T Consensus        91 ~~DalP~~e~~~~~~~s~~----~~~~h---acGhd~~~a~~lg~a~~l~~~~~~~~g~v~~if~paEE~~~-G~~~m~~  162 (418)
T 1xmb_A           91 DMDALPIQEGVEWEHKSKI----AGKMH---ACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLS-GAKKMRE  162 (418)
T ss_dssp             ECCCBSCCCCCCSTTCCSS----TTCBC---CSSHHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTC-HHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCC----CEECC---CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHH
T ss_conf             5200223147776656655----51023---44644056889999888876565138537983056520335-5679997


Q ss_pred             HHHHHCCCCEEEEECCCCCC-CCCCCEE--EEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             97764289608997687776-8776558--88510236888898644776344567741478999999999997400245
Q T0607           175 LLKERIGKPSLVICLDSGAG-NYEQLWM--TTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTG  251 (471)
Q Consensus       175 ~~~~~~~~~d~~~~~~~~~~-~~~~~~i--~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~  251 (471)
                      .  ..+...|+++....... ..+....  .....|...+++++.|.+  +|++. +....|++.++..++..+......
T Consensus       163 ~--g~~~~~d~~~~~h~~~~~~~~~~~~~~g~~~~~~~~~~i~~~Gk~--aHaa~-p~~~~~~i~a~~~~i~~l~~~~~~  237 (418)
T 1xmb_A          163 E--GALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKG--GHAAI-PQHTIDPVVAASSIVLSLQQLVSR  237 (418)
T ss_dssp             T--TTTTTEEEEEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC------------CCHHHHHHHHHHHHHHTTCBC
T ss_pred             C--CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC--CCCCC-CCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             6--765588740354202345653431014754111016998604577--76557-865788388999999998650334


Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECC
Q ss_conf             02133101444300089999998633455565421110012320010123333221001201302100057851303547
Q T0607           252 EIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRP  331 (471)
Q Consensus       252 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~  331 (471)
                      ..                                                  ......+++++.+    .++.+.||||+
T Consensus       238 ~~--------------------------------------------------~~~~~~~i~v~~i----~GG~a~NVIPd  263 (418)
T 1xmb_A          238 ET--------------------------------------------------DPLDSKVVTVSKV----NGGNAFNVIPD  263 (418)
T ss_dssp             CS--------------------------------------------------SGGGCEEEEEEEE----C--------CC
T ss_pred             CC--------------------------------------------------CCCCCEEEEEEEE----CCCCCCCCCCC
T ss_conf             67--------------------------------------------------9875379999997----27875522762


Q ss_pred             EEEEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE--
Q ss_conf             4899997512787888999999999999732-3663389998315767766899888999999999998369765234--
Q T0607           332 VTSLKLSMRLPPLVDPEAASVAMEKALTQNP-PYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYM--  408 (471)
Q Consensus       332 ~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--  408 (471)
                      ++++++++|..+.+.  ...+++...+.... ......++++.......+..-.+++.+.+.++++.++..|.+....  
T Consensus       264 ~a~l~~~iRa~~~~~--~~~~~i~~~~~~~a~a~~~~~~v~~~~~~~~~~p~~~Nd~~l~~~~~~~~~~~~G~~~v~~~~  341 (418)
T 1xmb_A          264 SITIGGTLRAFTGFT--QLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAA  341 (418)
T ss_dssp             EEEEEEEEEESSCHH--HHHHHHHHHHHHHHHHTTEEEEEESSGGGCCCBCCEEECHHHHHHHHHHHHHHHCGGGEEECC
T ss_pred             HHEEEEEEEECCHHH--HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             204554410101466--778999998889999845665101013542258754489999999999999861965422289


Q ss_pred             -ECCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             -4277655689999861899899968778666---75677760048999999999999999997139
Q T0607           409 -GEGGTIPFMSMLGEQFPKAQFMITGVLGPHS---NAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       409 -~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~---~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                       ..|+  .|.+.|+..+|++ .+.+|.+....   ..|+|+-.++-+.+..++++++.+..+|.++|
T Consensus       342 p~~gs--eDFg~~~~~vPg~-~~~iG~~~~~~~~~~~Hsp~f~~de~~l~~G~~~~a~~a~~~L~~~  405 (418)
T 1xmb_A          342 PVMGS--EDFSYFAETIPGH-FSLLGMQDETNGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEK  405 (418)
T ss_dssp             CBCCC--CTHHHHHTTSCEE-EEEEEEECTTCCSCCTTCTTCCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCH--HHHHHHHHHHHHH-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97108--8999999974461-8999616999998889999987897999999999999999998635


No 21 
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=99.97  E-value=1.2e-31  Score=212.63  Aligned_cols=349  Identities=9%  Similarity=-0.024  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEEEEE
Q ss_conf             99999999999617897988666666654799999999999998354884178975389924899987379-98879997
Q T0607            16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTVLLY   94 (471)
Q Consensus        16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i~l~   94 (471)
                      .|++|++|++|++|||+|++          +++++++|.+||+++   |+++++    +..+||+++++|+ ++|+|+|.
T Consensus         6 ~de~l~ll~~Lv~ipS~sg~----------E~~v~~~l~~~l~~~---G~ev~~----D~~GNlia~~~g~~~~p~lll~   68 (373)
T 1vhe_A            6 LDETLTMLKDLTDAKGIPGN----------EREVRQVMKSYIEPF---ADEVTT----DRLGSLIAKKTGAENGPKIMIA   68 (373)
T ss_dssp             CCHHHHHHHHHHHSCCCTTC----------CHHHHHHHHHHHGGG---CSEEEE----CTTCCEEEEEESSTTSCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECCCCCCCEEEEE
T ss_conf             89999999999749998966----------899999999999974---998999----0785699998379999769999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             34032328877677888635433454213564222420358999998876314787773689981564336446999999
Q T0607            95 GHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIE  174 (471)
Q Consensus        95 ~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~  174 (471)
                      |||||||+         ++....+++++||||+.|||++.+...... .+...+...+.+.+.+..++|.......... 
T Consensus        69 gH~DtV~~---------~~~~~~~~~~i~g~g~~d~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-  137 (373)
T 1vhe_A           69 GHLDEVGF---------MVTQITDKGFIRFQTVGGWWAQVMLAQRVT-IVTKKGEITGVIGSKPPHILSPEARKKSVEI-  137 (373)
T ss_dssp             EECCCCEE---------EEEEECTTSCEEEEEESCCCGGGTTTCEEE-EEETTEEEEEEEECCCGGGSCTTTTTSCCCG-
T ss_pred             EECCCCCC---------CCCEECCCCEEEEECCCCCCHHHHHHHHHH-HHHCCCCCEEEEEEEEEEECCCCCCCCCHHH-
T ss_conf             65586999---------885101487799633666677788778999-9852787202476644330232012331246-


Q ss_pred             HHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9776428960899768777687765588851023688889864477-634456774147899999999999740024502
Q T0607           175 LLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINE-GVHSGSASGIVADSFRVARQLISRIEDENTGEI  253 (471)
Q Consensus       175 ~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~-~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  253 (471)
                              .+............ .........+............. ..+.+ ...........+......+........
T Consensus       138 --------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  207 (373)
T 1vhe_A          138 --------KDMFIDIGASSREE-ALEWGVLPGDMIVPHFEFTVMNNEKFLLA-KAWDNRIGCAIAIDVLRNLQNTDHPNI  207 (373)
T ss_dssp             --------GGCEEECSCSSHHH-HHHTTCCTTCEEEECCCCEECSSTTEEEE-TTHHHHHHHHHHHHHHHHHHTSCCSSE
T ss_pred             --------HHHHCCCCCCCCCC-CEEEEECCCCCCCCCCCEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             --------66420102333221-10100012332101232156505553323-543110035788999987652046787


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE
Q ss_conf             13310144430008999999863345556542111001232001012333322100120130210005785130354748
Q T0607           254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT  333 (471)
Q Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~  333 (471)
                      ...+......                                                    +.+........++.+..+
T Consensus       208 ~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~  235 (373)
T 1vhe_A          208 VYGVGTVQEE----------------------------------------------------VGLRGAKTAAHTIQPDIA  235 (373)
T ss_dssp             EEEEEESCCT----------------------------------------------------TTSHHHHHHHHHHCCSEE
T ss_pred             CEEEEEECCE----------------------------------------------------EECCCCCCEEEEECCHHH
T ss_conf             3011222011----------------------------------------------------303434311112110244


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             99997512787888999999999999732366338999831576776689988899999999999836976523442776
Q T0607           334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT  413 (471)
Q Consensus       334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt  413 (471)
                      ......+........        ..................   ++  . ..++.+.+.+++++++.+.........+| 
T Consensus       236 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-  300 (373)
T 1vhe_A          236 FGVDVGIAGDTPGIS--------EKEAQSKMGKGPQIIVYD---AS--M-VSHKGLRDAVVATAEEAGIPYQFDAIAGG-  300 (373)
T ss_dssp             EEEEEEECCCSTTCC--------TTTCCCCTTSCCEEEEEE---TT--E-ECCHHHHHHHHHHHHHHTCCCEEEEETTC-
T ss_pred             HHHHHHHHHHHHHHH--------HHCCCCCCCCEEEEECCC---CC--C-CCCHHHHHHHHHHHHHCCCCCCEECCCCC-
T ss_conf             434344566665554--------420133322101221024---76--5-68989999999999980999625427983-


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5568999986189989996877866675677760048999999999999999997139
Q T0607           414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      ++|++.|.....|+|++.+||+.  .++|+||||++++++.+.+++|+++|.+|.+||
T Consensus       301 gtDa~~~~~~~~Giptv~~Gpg~--~~~H~~~E~v~i~di~~~~~l~~~~i~~l~~~~  356 (373)
T 1vhe_A          301 GTDSGAIHLTANGVPALSITIAT--RYIHTHAAMLHRDDYENAVKLITEVIKKLDRKT  356 (373)
T ss_dssp             CCTHHHHTTSTTCCCEEEEEEEE--BSTTSSCEEEEHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             CCHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             43899999866999399989364--888785459899999999999999999864987


No 22 
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4
Probab=99.97  E-value=2.6e-30  Score=204.33  Aligned_cols=334  Identities=8%  Similarity=-0.017  Sum_probs=193.8

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC
Q ss_conf             99999996178979886666666547999999999999983548841789753899248999873799887999734032
Q T0607            20 LPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDK   99 (471)
Q Consensus        20 i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~Dv   99 (471)
                      |++|++||+|||+|++          |.+++++|++||+++|   +++++    +..+||+++++|+++|+|+|.+||||
T Consensus         6 l~ll~~Lv~i~S~sg~----------E~~v~~~l~~~l~~~g---~~v~~----d~~gNvi~~~~g~~~~~l~~~~H~Dt   68 (348)
T 1ylo_A            6 LSLLKALSEADAIASS----------EQEVRQILLEEAARLQ---KEVRF----DGLGSVLIRLNESTGPKVMICAHMDE   68 (348)
T ss_dssp             HHHHHHHHHSCCBTTB----------CHHHHHHHHHHHHHTT---CCEEE----CTTCCEEEECCCCSSCEEEEEEECCC
T ss_pred             HHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEE----CCCCEEEEEECCCCCCEEEEEECCCC
T ss_conf             9999999729995987----------7999999999999739---98999----68962999989999986999962775


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32887767788863543345421356422242035899999887631478777368998156433644699999997764
Q T0607           100 QPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLKER  179 (471)
Q Consensus       100 Vp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~~~  179 (471)
                      ||.+.         ....++|++||+|..|+++++++..    .+.........+...+...|+.+..+..         
T Consensus        69 V~~~~---------~~~~~~G~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  126 (348)
T 1ylo_A           69 VGFMV---------RSISREGAIDVLPVGNVRMAARQLQ----PVRITTREECKIPGLLDGDRQGNDVSAM---------  126 (348)
T ss_dssp             CEEEE---------EEECTTCCEEEEEESCCCGGGSSSE----EEEEECTTCCEEEEEEEEEEETTEEEEE---------
T ss_pred             CCCCC---------CEECCCCEEEEECCEEECHHHHCCC----EEEEECCCCCCEEEEEECCCCCCCCCCE---------
T ss_conf             89999---------7464189786742101245454122----1799513575211221001247776552---------


Q ss_pred             CCCCEEEEECCCCC-CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             28960899768777-68776558885102368888986447763445677414789999999999974002450213310
Q T0607           180 IGKPSLVICLDSGA-GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQL  258 (471)
Q Consensus       180 ~~~~d~~~~~~~~~-~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~  258 (471)
                           + +...... ............++....+....+  ...|++.. ....+++..+......+..........   
T Consensus       127 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~---  194 (348)
T 1ylo_A          127 -----R-VDIGARTYDEVMQAGIRPGDRVTFDTTFQVLP--HQRVMGKA-FDDRLSCYLLVTLLRELHDAELPAEVW---  194 (348)
T ss_dssp             -----E-EECSCCSHHHHHHTTCCTTCEEEECCCCEEET--TTEEEETT-HHHHHHHHHHHHHHHHHTTCCCSSEEE---
T ss_pred             -----E-EEECCCCCCCCCCCCCCCCCCEEECCEEEEEC--CCCEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCE---
T ss_conf             -----5-76223333234211102443204302025651--43301222-346430467777789876224566604---


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEE
Q ss_conf             14443000899999986334555654211100123200101233332210012013021000578513035474899997
Q T0607           259 YCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLS  338 (471)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d  338 (471)
                                                                        ...+.....+........+.++..+...++
T Consensus       195 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (348)
T 1ylo_A          195 --------------------------------------------------LVASSSEEVGLRGGQTATRAVSPDVAIVLD  224 (348)
T ss_dssp             --------------------------------------------------EEEESCCTTSSHHHHHHHHHHCCSEEEEEC
T ss_pred             --------------------------------------------------EECCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             --------------------------------------------------300000013541100010344310121211


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHH
Q ss_conf             51278788899999999999973236633899983157677668998889999999999983697652344277655689
Q T0607           339 MRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMS  418 (471)
Q Consensus       339 ~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~  418 (471)
                      ++..........       ... ............  .. +   ...++.+.+....+.++.+..+......+| ++|++
T Consensus       225 ~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gtDa~  289 (348)
T 1ylo_A          225 TACWAKNFDYGA-------ANH-RQIGNGPMLVLS--DK-S---LIAPPKLTAWIETVAAEIGVPLQADMFSNG-GTDGG  289 (348)
T ss_dssp             CCCCSSTTCCST-------TCC-CCTTSCCEEEEE--CS-S---CBCCHHHHHHHHHHHHHHTCCCEEEECSSC-CCHHH
T ss_pred             CCCCCCCCHHHH-------HHH-HHCCCCCEEEEC--CC-C---CCCCCHHHCCCHHHHHHHCCCCEEEECCCC-CCHHH
T ss_conf             100455310567-------754-320232202321--67-6---667803311201479983999417857887-52489


Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99986189989996877866675677760048999999999999999997139
Q T0607           419 MLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       419 ~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      .|.....|+|++.||||.  .++|++|||++++++.+.+++|..+|.+|.++|
T Consensus       290 ~~~~~~~Giptv~~Gpg~--~~~Ht~~E~v~i~~l~~~~~~l~~~i~~L~~~~  340 (348)
T 1ylo_A          290 AVHLTGTGVPTLVMGPAT--RHGHCAASIADCRDILQMEQLLSALIQRLTRET  340 (348)
T ss_dssp             HHHTSTTCCCEEEEECCC--BSCSSSCEEEEHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             999847999899989583--778771269889999999999999999869999


No 23 
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A
Probab=99.96  E-value=1.8e-30  Score=205.40  Aligned_cols=342  Identities=10%  Similarity=-0.042  Sum_probs=167.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC
Q ss_conf             99999996178979886666666547999999999999983548841789753899248999873799887999734032
Q T0607            20 LPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDK   99 (471)
Q Consensus        20 i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~Dv   99 (471)
                      +++|++||+|||+|+.+.         +.+++++.+||+++   |+++++    +..+||+++++| +.|.|+|.|||||
T Consensus         9 ~~lL~~Lv~ipSpsg~E~---------~~v~~~l~~~l~~~---g~~v~~----D~~gNlia~~~g-~~p~i~l~aH~DT   71 (353)
T 1y0y_A            9 YELLKKVVEAPGVSGYEF---------LGIRDVVIEEIKDY---VDEVKV----DKLGNVIAHKKG-EGPKVMIAAHMDQ   71 (353)
T ss_dssp             HHHHHHHHHSCCBTTCGG---------GTHHHHHHHHHGGG---SSEEEE----CTTCCEEEEECC-SSCEEEEEEECCB
T ss_pred             HHHHHHHHCCCCCCCCHH---------HHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECC-CCCEEEEEECCCC
T ss_conf             999999974999596416---------99999999999970---996999----378429999789-9975999966886


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE--EEEECCCCCCCHHHHHHHHHHH
Q ss_conf             32887767788863543345421356422242035899999887631478777368--9981564336446999999977
Q T0607           100 QPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCI--LIIEACEESGSYDLPFYIELLK  177 (471)
Q Consensus       100 Vp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~--~~~~~~EE~G~~g~~~~~~~~~  177 (471)
                      ||...       ++.....++++||||+.|||+++++++.++.   ..+.......  +.+...++.+..+.        
T Consensus        72 V~~~~-------~~~~~~~~~~~~g~G~~d~k~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------  133 (353)
T 1y0y_A           72 IGLMV-------THIEKNGFLRVAPIGGVDPKTLIAQRFKVWI---DKGKFIYGVGASVPPHIQKPEDRKKA--------  133 (353)
T ss_dssp             CEEEE-------EEECTTSCEEEEEESSCCGGGTTTCEEEEEE---ETTEEEEEEEEC-------------C--------
T ss_pred             CCCCC-------CCCCCCCCEEEEECCCCCCCHHHHHHHHHHH---HCCCCCCCEEEEEEEEEECCCCCCCC--------
T ss_conf             99888-------9756555347850265465323788888766---24873377368876555303100133--------


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             64289608997687776877655888510236888898644776344567741478999999999997400245021331
Q T0607           178 ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQ  257 (471)
Q Consensus       178 ~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g  257 (471)
                      ... ....+...................++.........+...  |+. ......+++......+..+........    
T Consensus       134 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~----  205 (353)
T 1y0y_A          134 PDW-DQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHR--FVS-IAFDDRIAVYTILEVAKQLKDAKADVY----  205 (353)
T ss_dssp             CCG-GGCEEECSCSSHHHHHHTTCCTTCEEEECCCCEEETTTE--EEE-TTHHHHHHHHHHHHHHHHCCSCSSEEE----
T ss_pred             CCH-HHHHHHCCCCCCCCCEECCEEECCCCCEEEEEEEEEECC--CCC-CHHHHHHHHHHHHHHHHHHCCCCCCCC----
T ss_conf             213-455431366652000013401011220122346532011--114-244421236778887664202467643----


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEE
Q ss_conf             01444300089999998633455565421110012320010123333221001201302100057851303547489999
Q T0607           258 LYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKL  337 (471)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~  337 (471)
                                                                         ...++....+........+..+.......
T Consensus       206 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (353)
T 1y0y_A          206 ---------------------------------------------------FVATVQEEVGLRGARTSAFGIEPDYGFAI  234 (353)
T ss_dssp             ---------------------------------------------------EEEESCCTTTSHHHHHHHHHHCCSEEEEE
T ss_pred             ---------------------------------------------------CCCCEEEEEECCCCCCCCCCCCCCHHHEE
T ss_conf             ---------------------------------------------------11311346511222222334565311112


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH
Q ss_conf             75127878889999999999997323663389998315767766899888999999999998369765234427765568
Q T0607           338 SMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFM  417 (471)
Q Consensus       338 d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~  417 (471)
                      ..+..........       ............+..... .    .+ .++.+.+.++++++.....+......+| ++|+
T Consensus       235 ~~~~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gsD~  300 (353)
T 1y0y_A          235 DVTIAADIPGTPE-------HKQVTHLGKGTAIKIMDR-S----VI-CHPTIVRWLEELAKKHEIPYQLEILLGG-GTDA  300 (353)
T ss_dssp             EEEECCCSTTCCG-------GGCCCCTTSCEEEEEEET-T----EE-CCHHHHHHHHHHHHHTTCCEEEEECSSC-CCTH
T ss_pred             EEEECCCCCCCHH-------HHHHHHHCCCCCCEECCC-C----CC-CCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHH
T ss_conf             1000344100024-------555566503654121257-6----54-6757766789999982999438847885-4528


Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999986189989996877866675677760048999999999999999997139
Q T0607           418 SMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       418 ~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      +.|.....|+|++.+||+..  ++|++|||++++++.+.+++|.++|.+|-+.|
T Consensus       301 ~~~~~~~~Gip~v~~G~g~~--~~Ht~~E~v~i~d~~~~~~ll~~~l~~l~~~~  352 (353)
T 1y0y_A          301 GAIHLTKAGVPTGALSVPAR--YIHSNTEVVDERDVDATVELMTKALENIHELK  352 (353)
T ss_dssp             HHHTTSTTCCCEEEEEEEEB--SCSSSCEEEEHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHCCCCCEEEECCCCC--CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99997469997899823707--78660249899999999999999998546321


No 24 
>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4
Probab=99.96  E-value=1.4e-29  Score=199.74  Aligned_cols=341  Identities=14%  Similarity=0.001  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEE
Q ss_conf             98899999999999617897988666666654799999999999998354884178975389924899987379-98879
Q T0607            13 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTV   91 (471)
Q Consensus        13 ~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i   91 (471)
                      .++.+++|++|++||+|||+|++          +.+++++|++||+++   |+++++    +..+||++.++|+ +.|+|
T Consensus         2 ~~~~~e~i~ll~~Lv~i~S~sg~----------E~~v~~~l~~~l~~~---G~~v~~----d~~gNvi~~~~g~~~~~~i   64 (349)
T 2gre_A            2 AHHTKETMELIKELVSIPSPSGN----------TAKIINFIENYVSEW---NVETKR----NNKGALILTVKGKNDAQHR   64 (349)
T ss_dssp             -CHHHHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHTTTS---SSEEEE----CSSSCEEEEECCSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----ECCCCEEEEECCCCCCCEE
T ss_conf             50079999999999649998968----------999999999999975---987999----7688399998678999759


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf             99734032328877677888635433454213564222420358999998876314787773689981564336446999
Q T0607            92 LLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPF  171 (471)
Q Consensus        92 ~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~  171 (471)
                      +|++||||||.      ..+||. ...+.++||||+.|||+++++++.+.........  +...+++...++....+...
T Consensus        65 ll~~H~Dtv~~------~~~~~~-~~g~~~~~g~G~~d~k~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  135 (349)
T 2gre_A           65 LLTAHVDTLGA------MVKEIK-PDGRLSLSMIGGFRWNSVEGEYCEIETSSGKTYT--GTILMHQTSVHVYKDAGEAK  135 (349)
T ss_dssp             EEEEECCBCEE------EEEEEC-TTSCEEEEEESSCCGGGTTTCEEEEECTTSCEEE--EEEECC--------------
T ss_pred             EEEECCCCCCC------CCCCCC-CCCCEEEECCCCCCCCCCCHHEEEEEECCCCCCC--CCEEEEEEEEECCCCCCCCC
T ss_conf             99963567887------789805-2687788746662566551017875500475567--86014776344032223442


Q ss_pred             HHHHHHHHCCCCEEEEECCCCC-CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999776428960899768777-687765588851023688889864477634456774147899999999999740024
Q T0607           172 YIELLKERIGKPSLVICLDSGA-GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENT  250 (471)
Q Consensus       172 ~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~  250 (471)
                      ...      ...+......... .+.....+..+.++..+..++..+  ...|++... ...+++......+..+.....
T Consensus       136 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  206 (349)
T 2gre_A          136 RDE------KNIEVRIDERVFSADEVRELGIEVGDFVSFDPRVQITE--SGYIKSRHL-DDKVSVAILLKLIKRLQDENV  206 (349)
T ss_dssp             -----------CEEEESSCCCSHHHHHHTTCCTTCEEEECCCCEECT--TSEEEESCC-TTHHHHHHHHHHHHHHHHHTC
T ss_pred             CHH------HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC--CCCEECCCC-CCCCCHHHHHHHHHHHHHHCC
T ss_conf             126------67763456550121000145522322899966899812--341212431-362415899999999776324


Q ss_pred             CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEEC
Q ss_conf             50213310144430008999999863345556542111001232001012333322100120130210005785130354
Q T0607           251 GEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMR  330 (471)
Q Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip  330 (471)
                      .....                                                   .....+.....    ......+++
T Consensus       207 ~~~~~---------------------------------------------------~~~~~~~~~~~----~~~~~~~~~  231 (349)
T 2gre_A          207 TLPYT---------------------------------------------------THFLISNNEEI----GYGGNSNIP  231 (349)
T ss_dssp             CCSEE---------------------------------------------------EEEEEESCC--------CCCCCCC
T ss_pred             CCCCC---------------------------------------------------CCCCCEEEEEE----EEECCCCCC
T ss_conf             77764---------------------------------------------------21342367887----420445456


Q ss_pred             CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf             74899997512787888999999999999732366338999831576776689988899999999999836976523442
Q T0607           331 PVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGE  410 (471)
Q Consensus       331 ~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  410 (471)
                      ........++..........             ....+.+....     ...+. +..+.+.+..+.++.+.........
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  292 (349)
T 2gre_A          232 EETVEYLAVDMGALGDGQAS-------------DEYTVSICAKD-----SSGPY-HYALRKHLVELAKTNHIEYKVDIYP  292 (349)
T ss_dssp             TTEEEEEEECCCCCSCC--C-------------CTTSEEEEEEE-----TTEEC-CHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCHHHHHHHHHHCCCCCCC-------------CCCEEEEEECC-----CCCCC-CCHHHHHHHHHHHHCCCCCCEEECC
T ss_conf             77515555320101467766-------------44405777404-----65554-6202456899999839994067478


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             77655689999861899899968778666756777600489999999999999999
Q T0607           411 GGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYS  466 (471)
Q Consensus       411 gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~  466 (471)
                      +| ++|++.|.....|+|++.+||+.  .++|++ |+++++++.+.+++|..+|.+
T Consensus       293 ~g-gtD~~~~~~~~~Gip~v~~G~g~--~~~Ht~-E~v~i~~i~~~~~~l~~~l~~  344 (349)
T 2gre_A          293 YY-GSDASAAIRAGFDVKHALIGAGI--DSSHAF-ERTHESSIAHTEALVYAYVMS  344 (349)
T ss_dssp             CC---------CCSSSCEEEEEEECC--BSTTSS-EEEEHHHHHHHHHHHHHHHHS
T ss_pred             CC-CCHHHHHHHHCCCCCEEEECCCC--CCCCCC-EEEEHHHHHHHHHHHHHHHHH
T ss_conf             70-05479999848999899989272--677469-898899999999999999961


No 25 
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=99.96  E-value=6.9e-30  Score=201.74  Aligned_cols=335  Identities=11%  Similarity=-0.028  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf             99999988999999999996178979886666666547999999999999983548841789753899248999873799
Q T0607             8 YDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQI   87 (471)
Q Consensus         8 ~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~   87 (471)
                      .||+ ..+...|.++|++||+|||+|++          |++++++|.+||+++   |+++++    +..+||+++.++ +
T Consensus         3 ~~~~-~~~~~~m~elL~~Lv~ipSpSG~----------E~~~~~~i~~~l~~~---g~~v~~----D~~gNlia~~~~-~   63 (343)
T 3isx_A            3 SDKI-HHHHHHMKELIRKLTEAFGPSGR----------EEEVRSIILEELEGH---IDGHRI----DGLGNLIVWKGS-G   63 (343)
T ss_dssp             -------CCSCCHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHTTT---CSEEEE----CTTCCEEEEECC-C
T ss_pred             CCHH-HHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECC-C
T ss_conf             5213-21168999999999629996986----------899999999999970---998999----588449999389-9


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH
Q ss_conf             88799973403232887767788863543345421356422242035899999887631478777368998156433644
Q T0607            88 DDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSY  167 (471)
Q Consensus        88 ~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~  167 (471)
                      +|+|+|.+|+||||..             +++.+.+|||..|+||++.+...+...+......... ...+...++....
T Consensus        64 ~p~vll~aH~DTV~~~-------------~~~~~~~G~~~~~~~Gg~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~e  129 (343)
T 3isx_A           64 EKKVILDAHIDEIGVV-------------VTNVDDKGFLTIEPVGGVSPYMLLGKRIRFENGTIGV-VGMEGETTEERQE  129 (343)
T ss_dssp             SSEEEEEEECCBCEEE-------------EEEECTTSCEEEEEESSCCHHHHTTCEEEETTSCEEE-EEECCCSHHHHHH
T ss_pred             CCEEEEEECCCCCCCC-------------CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC-EEEEEEEECCCCC
T ss_conf             9759999557887982-------------8854668999998364599999999999971598663-0114346144454


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCC-----CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             69999999776428960899768777-----6877655888510236888898644776344567741478999999999
Q T0607           168 DLPFYIELLKERIGKPSLVICLDSGA-----GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLI  242 (471)
Q Consensus       168 g~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~  242 (471)
                      +...        .....+.+......     ............++......+++|...  |       ...++.++..++
T Consensus       130 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~-------~~~g~~al~~~~  192 (343)
T 3isx_A          130 NVRK--------LSFDKLFIDIGANSREEAQKMCPIGSFGVYDSGFVEVSGKYVSKAM--D-------DRIGCAVIVEVF  192 (343)
T ss_dssp             HHHT--------CCGGGEEEECSCSSHHHHHHHSCTTCEEEESCCCEEETTEEEESCH--H-------HHHHHHHHHHHH
T ss_pred             CCCC--------CCHHHHEECCCCCCHHHHHCCCCCCCEEEECCCEEEEECEEEECCC--C-------CHHHHHHHHHHH
T ss_conf             5565--------3555650102757678873357778479963726998442986467--7-------787899999999


Q ss_pred             HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCC
Q ss_conf             99740024502133101444300089999998633455565421110012320010123333221001201302100057
Q T0607           243 SRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAI  322 (471)
Q Consensus       243 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~  322 (471)
                      ..+......                                                        ....++....+...+
T Consensus       193 ~~l~~~~~~--------------------------------------------------------~~~~~~~~~~g~~~~  216 (343)
T 3isx_A          193 KRIKPAVTL--------------------------------------------------------YGVFSVQEEVGLVGA  216 (343)
T ss_dssp             HHCCCSSEE--------------------------------------------------------EEEEECCCCTTSCCS
T ss_pred             HHHCCCCCE--------------------------------------------------------EEECCCCEEECEEEE
T ss_conf             963604757--------------------------------------------------------981665378442743


Q ss_pred             CCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             85130354748999975127878889999999999997323663389998315767766899888999999999998369
Q T0607           323 ADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYD  402 (471)
Q Consensus       323 ~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  402 (471)
                      ++..|.++..+....+.|.........        .+..........++... ..     +..++.+...+.+++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~~  282 (343)
T 3isx_A          217 SVAGYGVPADEAIAIDVTDSADTPKAI--------KRHAMRLSGGPALKVKD-RA-----SISSKRILENLIEIAEKFDI  282 (343)
T ss_dssp             TTTGGGCCCSEEEEEEEEECCCSTTCC--------CTTCCCTTSCCEEECBT-TC-----CHHHHHHHHHHHHHHHHTTC
T ss_pred             EEECCCCCCHHEEEEEEEECCCCCCCH--------HHHHHHHCCCEEEEECC-CC-----CCCCHHHHHHHHHHHHHCCC
T ss_conf             210245685001122037615774535--------77777535844999746-88-----87887899999999998199


Q ss_pred             CCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             765234427765568999986189989996877866675677760048999999999999999
Q T0607           403 KPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLY  465 (471)
Q Consensus       403 ~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~  465 (471)
                      ........+| ++|++.|.....|+|++.+||+.  .++|++||+++++++.+.+++|.++|.
T Consensus       283 ~~~~~~~~~g-gTDa~~~~~~~~Giptv~~Gpg~--~~aHt~~E~v~i~dl~~~~~ll~~~L~  342 (343)
T 3isx_A          283 KYQMEVLTFG-GTNAMGYQRTREGIPSATVSIPT--RYVHSPSEMIAPDDVEATVDLLIRYLG  342 (343)
T ss_dssp             CCEECCCBCC-CSSHHHHHHHTSSCCEEEEEEEE--BSTTSTTEEECHHHHHHHHHHHHHHHC
T ss_pred             CCEEEECCCE-EEHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHC
T ss_conf             9558617872-06789999847999899989263--777750208999999999999999975


No 26 
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, substrate specificity, metallopeptidase M42, hydrolase; 2.70A {Streptococcus pneumoniae R6}
Probab=99.96  E-value=8.4e-30  Score=201.19  Aligned_cols=342  Identities=9%  Similarity=-0.061  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC--CCCEEEEE
Q ss_conf             9999999999617897988666666654799999999999998354884178975389924899987379--98879997
Q T0607            17 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ--IDDTVLLY   94 (471)
Q Consensus        17 ~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~--~~~~i~l~   94 (471)
                      .+++++|++||+|||+|++          |.+++++|++||+++|   +++++    +..+||++.++|+  ++|+|+|.
T Consensus         3 ~~l~~~L~eLv~IpS~Sg~----------E~~~~~~i~~~l~~~G---~~v~~----D~~GNvi~~~~g~~~~~p~l~l~   65 (355)
T 3kl9_A            3 TTLFSKIKEVTELAAVSGH----------EAPVRAYLREKLTPHV---DEVVT----DGLGGIFGIKHSEAVDAPRVLVA   65 (355)
T ss_dssp             HHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHHGGGS---SEEEE----CTTSCEEEEECCCSTTCCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEE----ECCCCEEEEECCCCCCCCEEEEE
T ss_conf             7999999999819998988----------7999999999999729---98999----57865899977888999869998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             34032328877677888635433454213564222420358999998876314787773689981564336446999999
Q T0607            95 GHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIE  174 (471)
Q Consensus        95 ~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~  174 (471)
                      |||||||...      +|+. ....++++|+|..|+|+...+++.++....+...............+|.+.... .+  
T Consensus        66 ~H~DTV~~~v------~~~~-~~~~~~~~~~G~~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  135 (355)
T 3kl9_A           66 SHMDEVGFMV------SEIK-PDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVISGSVPPHLTRGKGGPTMP-AI--  135 (355)
T ss_dssp             EECCBCEEEE------EEEC-TTSCEEEEEESCCCTTTCSSCEEEEECTTSCEEEEEEC---------------C-CG--
T ss_pred             CCCCCCCCCC------CCCC-CCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCH-HH--
T ss_conf             5667699888------8736-576156503552536556442999986326434442032343442033445421-13--


Q ss_pred             HHHHHCCCCEEEEECCCCC-CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9776428960899768777-687765588851023688889864477634456774147899999999999740024502
Q T0607           175 LLKERIGKPSLVICLDSGA-GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI  253 (471)
Q Consensus       175 ~~~~~~~~~d~~~~~~~~~-~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  253 (471)
                        ...      ........ .......+..+..+.......+.+.  ..|.+..+....+++..+.+++..+........
T Consensus       136 --~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (355)
T 3kl9_A          136 --ADI------VFDGGFADKAEAESFGIRPGDTIVPDSSAILTAN--EKNIISKAWDNRYGVLMVSELAEALSGQKLGNE  205 (355)
T ss_dssp             --GGS------CEECCCSSHHHHHHTTCCTTCEEEECCCCEECTT--SSEEEESCHHHHHHHHHHHHHHHHHSSCCCSSE
T ss_pred             --HHH------HHCCCCCCHHHHCCCCCEEEEEEEEEEEEEEECC--CCEEECCHHCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             --332------1000232022200466023157775200377413--325741410141556554899999974447872


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE
Q ss_conf             13310144430008999999863345556542111001232001012333322100120130210005785130354748
Q T0607           254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT  333 (471)
Q Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~  333 (471)
                      .................                                                    .......++.+
T Consensus       206 ~~~~~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~  233 (355)
T 3kl9_A          206 LYLGSNVQEEVGLRGAH----------------------------------------------------TSTTKFDPEVF  233 (355)
T ss_dssp             EEEEEESCCTTTSHHHH----------------------------------------------------HHHHHHCCSEE
T ss_pred             EEEECCEEEEEEECCCC----------------------------------------------------EEEECCCHHHH
T ss_conf             37623236875202431----------------------------------------------------00000131555


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             99997512787888999999999999732366338999831576776689988899999999999836976523442776
Q T0607           334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT  413 (471)
Q Consensus       334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt  413 (471)
                      . ....+......           ... ........+....     .. ...++.+.+.+..+++..+.........|| 
T Consensus       234 ~-~~~~~~~~~~~-----------~~~-~~~~~~~~i~~~~-----~~-~~~d~~l~~~~~~~~~~~g~~~~~~~~~gg-  293 (355)
T 3kl9_A          234 L-AVDCSPAGDVY-----------GGQ-GKIGDGTLIRFYD-----PG-HLLLPGMKDFLLTTAEEAGIKYQYYCGKGG-  293 (355)
T ss_dssp             E-EEEEEECCGGG-----------TSS-CCTTSCEEEEEEE-----TT-EECCHHHHHHHHHHHHHTTCCEEEEECSSC-
T ss_pred             H-HHHHHHHHHHH-----------HCC-CCCCCCEEEEECC-----CC-CCCCHHHHHHHHHHHHHHCCCCEEECCCCC-
T ss_conf             4-44555431012-----------111-2235532553037-----66-668989999999999984999689737877-


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             556899998618998999687786667567776004899999999999999999713
Q T0607           414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~  470 (471)
                       +|++.|.....|+|++.+|||.  .++|++|||++++++.+.+++|.++|.+|-++
T Consensus       294 -tDa~~~~~~~~Giptv~~Gpg~--~~~Ht~~E~i~~~~l~~~~~~l~~~i~~l~~~  347 (355)
T 3kl9_A          294 -TDAGAAHLKNGGVPSTTIGVCA--RYIHSHQTLYAMDDFLEAQAFLQALVKKLDRS  347 (355)
T ss_dssp             -CTHHHHTTSTTCCCEEEEEEEE--BSCSSSCEEEEHHHHHHHHHHHHHHHHTCCHH
T ss_pred             -CHHHHHHHHCCCCCEEEECCCC--CCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -0689999866999899983164--78865563888999999999999999987288


No 27 
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=99.96  E-value=1.5e-29  Score=199.72  Aligned_cols=334  Identities=9%  Similarity=-0.044  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             99999999999617897988666666654799999999999998354884178975389924899987379988799973
Q T0607            16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG   95 (471)
Q Consensus        16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~   95 (471)
                      +.+.+++|++||+|||+|++          |.+++++|.+||+++   |+++++    +..+||+++++|++.|+|+|++
T Consensus         4 k~~~~~lL~~Li~I~S~sg~----------E~~v~~~l~~~L~~~---g~ev~~----d~~gNlia~~~g~~~p~ll~~~   66 (346)
T 1vho_A            4 KMETGKLLMELSNLDGPSGY----------ETNVVSYIKSVIEPF---VDEAKT----TRHGSLIGYKKGKGIGKLAFFA   66 (346)
T ss_dssp             -CCHHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHGGG---CSEEEE----CTTSCEEEEECCSSSCEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----ECCCEEEEEECCCCCCCEEEEE
T ss_conf             47999999999639996964----------899999999999975---998999----3697399998888997389997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             40323288776778886354334542135642224203589999988763147877736899815643364469999999
Q T0607            96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIEL  175 (471)
Q Consensus        96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~  175 (471)
                      |+||||          |+...++|+++||+|..|++.....+..+. .+.+.+..+....+.. ..++.+   ....   
T Consensus        67 H~DTv~----------~~~~~i~dg~~~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~---~~~~---  128 (346)
T 1vho_A           67 HVDEIG----------FVVSKVEGQFARLEPVGGVDPKVVYASKVR-IYTKNGIERGVIGMLA-PHLQDS---ESRK---  128 (346)
T ss_dssp             ECCBCC----------EEEEEEETTEEEEEEC--------CCCEEE-EEETTEEEEEETTCCC-SCCCCH---HHHH---
T ss_pred             CCCCCC----------CCCCEEECCCEEECCCCCCCCCCCCEEEEE-EECCCCCEEEEEEEEE-EECCCC---CCCC---
T ss_conf             157789----------979768699343115446574452100688-4124895403789963-320343---2123---


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             77642896089976877768776558885102368888986447763445677414789999999999974002450213
Q T0607           176 LKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKL  255 (471)
Q Consensus       176 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  255 (471)
                        ..................      ....++.......+.+.  ..|++. +....+++..+..++..+..........
T Consensus       129 --~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~  197 (346)
T 1vho_A          129 --KVPTYDEIFVDLSLCERG------VRVGDIAVIDQTAFETN--GKVVGK-ALDNRASCGVLVKVLEFLKRYDHPWDVY  197 (346)
T ss_dssp             --TSCCTTCCEEEGGGSSSC------CCTTCEEEECCCCEEET--TEEEET-THHHHHHHHHHHHHHHHHTTCCCSSEEE
T ss_pred             --CCCCCCCCEEECCCCCEE------EECCCEEEEEEEEEEEC--CEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             --343200011210233103------41241035557899703--748862-3214234788999999987336677742


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEE
Q ss_conf             31014443000899999986334555654211100123200101233332210012013021000578513035474899
Q T0607           256 PQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSL  335 (471)
Q Consensus       256 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~  335 (471)
                      .                                                     ..++..+    .++...+.++..+..
T Consensus       198 ~-----------------------------------------------------~~~~~~~----~~~~~~~~~~~~~~~  220 (346)
T 1vho_A          198 V-----------------------------------------------------VFSVQEE----TGCLGALTGAYEINP  220 (346)
T ss_dssp             E-----------------------------------------------------EEECTTS----SSHHHHHHTTCCCCC
T ss_pred             C-----------------------------------------------------CCEEEEE----CCCCCCCEEEEEEEE
T ss_conf             0-----------------------------------------------------0002210----267677421024330


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEECCCCH
Q ss_conf             997512787888999999999999732366338999831576776689988899999999999836-9765234427765
Q T0607           336 KLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYY-DKPAAYMGEGGTI  414 (471)
Q Consensus       336 ~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~gGt~  414 (471)
                      .++.|+.+....+....       ...........      ....   ..++.....+........ .........+ ++
T Consensus       221 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-gg  283 (346)
T 1vho_A          221 DAAIVMDVTFASEPPFS-------DHIELGKGPVI------GLGP---VVDRNLVQKIIEIAKKHNVSLQEEAVGGR-SG  283 (346)
T ss_dssp             SEEEEEEEECCCCTTSC-------CCCCTTSCCEE------ECST---TSCHHHHHHHHHHHHHTTCCCEEESSCCC---
T ss_pred             ECCCCCCCCCCCCCCCC-------CCCCCCCCCCC------CCCC---CCCCHHHHHHHHHHHHHCCCCCEEEEECC-CC
T ss_conf             00100134335665444-------33201101211------2454---34420355665556864788763686288-67


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             568999986189989996877866675677760048999999999999999997139
Q T0607           415 PFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK  471 (471)
Q Consensus       415 ~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~  471 (471)
                      +|++.+.....|+|++.+||+.  .++|++|||++++++.+.+++|..++.+|.+++
T Consensus       284 tDa~~~~~~~~Giptv~~G~g~--~~~Ht~~E~v~i~di~~~~~ll~~~i~~l~~e~  338 (346)
T 1vho_A          284 TETDFVQLVRNGVRTSLISIPL--KYMHTPVEMVDPRDVEELARLLSLVAVELEVEG  338 (346)
T ss_dssp             --CTTHHHHHTTCEEEEEEEEC--BSTTSTTEEECHHHHHHHHHHHHHHHHHCC---
T ss_pred             CHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8789999747999299988052--788712269999999999999999999975466


No 28 
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structural genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94  E-value=2.3e-28  Score=192.31  Aligned_cols=314  Identities=11%  Similarity=-0.009  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf             99999999889999999999961789798866666665479999999999999835488417897538992489998737
Q T0607             6 GLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPG   85 (471)
Q Consensus         6 ~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g   85 (471)
                      +...|+ |+.+++.|++|++||+|||+|++          |..++++|.+||+++|.+....+.....+..+|+++..++
T Consensus         7 ~~~~~~-e~~~~e~iell~~Lv~i~S~sg~----------E~~i~~~i~~~L~~~G~~~~~~~~~~~~~~~~nvia~~~~   75 (321)
T 3cpx_A            7 HHHHHH-ENLYFQGMQLLKELCSIHAPSGN----------EEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG   75 (321)
T ss_dssp             -------CGGGCCHHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHHHHGGGSSSCCEEECSGGGTTCEEEEES
T ss_pred             CCCCCH-HHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCC
T ss_conf             233115-56659999999999749997988----------8999999999999669978993033334762459996289


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC-C
Q ss_conf             998879997340323288776778886354334542135642224203589999988763147877736899815643-3
Q T0607            86 QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEE-S  164 (471)
Q Consensus        86 ~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE-~  164 (471)
                        .|.|+|.+||||||.+....|..            +++|+.|||++.+.+                   +.+.++| .
T Consensus        76 --~~~vl~~gH~Dtv~~~~~~~~~~------------~~~g~~d~k~~~~~~-------------------v~~~~~~~~  122 (321)
T 3cpx_A           76 --NPRTAVFAHMDSIGFTVSYNNHL------------HPIGSPSAKEGYRLV-------------------GKDSNGDIE  122 (321)
T ss_dssp             --SCSEEEEEECCBCEEEECSTTBE------------EEESSCCCCTTCEEE-------------------EEETTEEEE
T ss_pred             --CCEEEEEECCCCCCCCCCCCCCC------------CCCCCHHHHCCEEEE-------------------EEECCCCCC
T ss_conf             --86399971256668741210356------------764654132060899-------------------994687434


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             64469999999776428960899768777687765588851023688889864477634456774147899999999999
Q T0607           165 GSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISR  244 (471)
Q Consensus       165 G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~  244 (471)
                      +..+...           ...        ..+....+.+|+.+.+...+...|  +..|+...  ...+++..+..++..
T Consensus       123 ~~~~~~~-----------~~~--------~~~~~~~~~iG~~~~~~~~~~~~g--~~~~~~~~--~~~~~~~~~~~ai~~  179 (321)
T 3cpx_A          123 GVLKIVD-----------EEW--------MLETDRLIDRGTEVTFKPDFREEG--DFILTPYL--DDRLGVWTALELAKT  179 (321)
T ss_dssp             EEEECGG-----------GSC--------EEECSSCCCTTCEEEECCCCEEET--TEEECTTH--HHHHHHHHHHHHTTT
T ss_pred             CCCCCCC-----------CCC--------CCHHHHCCCCCCEEEECCEEEEEC--CEEEEEEC--CCCCCHHHHHHHHHH
T ss_conf             6554554-----------111--------661541757783797302299989--99987506--676579999999987


Q ss_pred             HHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCC
Q ss_conf             74002450213310144430008999999863345556542111001232001012333322100120130210005785
Q T0607           245 IEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIAD  324 (471)
Q Consensus       245 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~  324 (471)
                      +....   .                                                        ..++..+    .++.
T Consensus       180 l~~~~---~--------------------------------------------------------~~~~~~~----~g~~  196 (321)
T 3cpx_A          180 LEHGI---I--------------------------------------------------------AFTCWEE----HGGG  196 (321)
T ss_dssp             CCSEE---E--------------------------------------------------------EEESSTT----TTCC
T ss_pred             CCCCC---E--------------------------------------------------------EEEEEEE----ECCC
T ss_conf             05066---8--------------------------------------------------------8662288----6550


Q ss_pred             CCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             13035474899997512787888999999999999732366338999831576776689988899999999999836976
Q T0607           325 AGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKP  404 (471)
Q Consensus       325 ~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  404 (471)
                      ..|++|..+...+++|..+..+.....       ........  ......   ..   ...++.+.+.++...++.....
T Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~  261 (321)
T 3cpx_A          197 SVAYLARWIYETFHVKQSLICDITWVT-------EGVEAGKG--VAISMR---DR---MIPRKKYVNRIIELARQTDIPF  261 (321)
T ss_dssp             SHHHHHHHHHHHHCCCEEEECCCEECC-------SSSCTTSC--EEEEEE---SS---SCCCHHHHHHHHHHHTTSSCCE
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCC-------CCCCCCCC--EEEECC---CC---CCCCHHHHHHHHHHHHHHCCCC
T ss_conf             032145421334015678631576443-------22211341--366305---77---6689899999999998608984


Q ss_pred             CCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             523442776556899998618998999687786667567776004899999999999999999
Q T0607           405 AAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF  467 (471)
Q Consensus       405 ~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l  467 (471)
                      ......+| ++|++.|.....|+|++.+|||.  .++|++|||++++++.+.+++|..+|.+|
T Consensus       262 ~~~v~~~g-gTDa~~~~~~~~gip~v~~Gpg~--~~~Ht~~E~v~i~dl~~~~~i~~~~i~~L  321 (321)
T 3cpx_A          262 QLEVEGAG-ASDGRELQLSPYPWDWCFIGAPE--KDAHTPNECVHKKDIESMVGLYKYLMEKL  321 (321)
T ss_dssp             EEEECSSC-CCHHHHHHHSSSCCBCCBEECEE--BSTTSTTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCC-CCHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             37757997-66899999857999899989372--77863337999999999999999999639


No 29 
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} SCOP: b.49.3.1 c.56.5.4
Probab=99.94  E-value=6.4e-28  Score=189.56  Aligned_cols=327  Identities=10%  Similarity=-0.011  Sum_probs=162.0

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEEEEECCCCCC
Q ss_conf             99999617897988666666654799999999999998354884178975389924899987379-98879997340323
Q T0607            22 SLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTVLLYGHLDKQ  100 (471)
Q Consensus        22 ~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i~l~~H~DvV  100 (471)
                      .|++||+|||+|++          |.+++++|++||+++|   +++++    +..+||+++++|+ ++|+|+|.+|||||
T Consensus         3 ~L~~Lv~ipS~sg~----------E~~v~~~l~~~l~~~G---~~v~~----d~~GNvia~~~g~~~~~~l~l~~H~DtV   65 (340)
T 2fvg_A            3 YLKELSMMPGVSGD----------EGKVRDFIKSKIEGLV---DNLYT----DVLGNLIALKRGRDSSKKLLVSAHMDEV   65 (340)
T ss_dssp             CHHHHHHSCCBTTC----------CHHHHHHHHHHHGGGS---SEEEE----CTTSCEEEEECCSEEEEEEEEEEECCBC
T ss_pred             HHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEE----ECCCEEEEEECCCCCCCEEEEECCCCCC
T ss_conf             69998559997987----------8999999999999759---98999----1795499998378999859998335558


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             2887767788863543345421356422242035899999887631478--77736899815643364469999999776
Q T0607           101 PEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGL--PYPRCILIIEACEESGSYDLPFYIELLKE  178 (471)
Q Consensus       101 p~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~--~~~~~~~~~~~~EE~G~~g~~~~~~~~~~  178 (471)
                      |++....|...++.       ..+.+..|++...+..      +.....  ......+.+..+|+.+..+.         
T Consensus        66 p~~~~~~~~~g~~~-------~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  123 (340)
T 2fvg_A           66 GFVVSKIEKDGKVS-------FLPVGGVDPRILPGKV------VQVKNLKGVIGYRPIHLQRDEENTPPRF---------  123 (340)
T ss_dssp             EEEEEEECTTSCEE-------EEEESCCCGGGCTTCE------EEETTEEEEEEECC-----------CCS---------
T ss_pred             CCCCCCCCCCCCEE-------EECCCCCCHHHHHHHH------HHHHHCCCCCCCCCEEEEHHHHCCCCCH---------
T ss_conf             98387546578466-------3034241213565566------5343024666763034202331144202---------


Q ss_pred             HCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             42896089976877768776558885102368888986447763445677414789999999999974002450213310
Q T0607           179 RIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQL  258 (471)
Q Consensus       179 ~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~  258 (471)
                          ..................+..+..+  .+...........+  ..+.   +........+..+.........    
T Consensus       124 ----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~----  188 (340)
T 2fvg_A          124 ----ENLRIDFGFSSADEAKKYVSIGDYV--SFVSDYIEKNGRAV--GKAF---DDRAGCSVLIDVLESGVSPAYD----  188 (340)
T ss_dssp             ----TTEEEECSCSSHHHHHTTCCTTCEE--EECCCCEEETTEEE--ESCH---HHHHHHHHHHHHHHTCCCCSEE----
T ss_pred             ----HHHHHHHCCCCCCCCCEEECCCCCE--EEEEEEEEECCCCC--CCCC---CCHHHHHHHHHHHHHHHHHCCC----
T ss_conf             ----4444210245200121255136522--65003798336311--2433---3424589999999874440133----


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEE
Q ss_conf             14443000899999986334555654211100123200101233332210012013021000578513035474899997
Q T0607           259 YCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLS  338 (471)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d  338 (471)
                                                                      ...+.......+...++...|.||..+...++
T Consensus       189 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (340)
T 2fvg_A          189 ------------------------------------------------TYFVFTVQEETGLRGSAVVVEQLKPTCAIVVE  220 (340)
T ss_dssp             ------------------------------------------------EEEEEECCCC-----CHHHHHHHCCSEEEEEE
T ss_pred             ------------------------------------------------CEECCCCEEEEECCCCCCCCCCCCCHHEEEEE
T ss_conf             ------------------------------------------------10012202442024576433222521101011


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHH
Q ss_conf             51278788899999999999973236633899983157677668998889999999999983697652344277655689
Q T0607           339 MRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMS  418 (471)
Q Consensus       339 ~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~  418 (471)
                      +|..+........+.    ..   ........  ...   .. ....++.+...+..+.++.+.........+| ++|++
T Consensus       221 ~~~~~~~~~~~~~~~----~~---~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gtDa~  286 (340)
T 2fvg_A          221 TTTAGDNPELEERKW----AT---HLGDGPAI--TFY---HR-GYVIPKEIFQTIVDTAKNNDIPFQMKRRTAG-GTDAG  286 (340)
T ss_dssp             EEEECSCSTTCCSSS----SC---CTTSCCEE--CSC---CS-SSCCCHHHHHHHHHHHHHTTCCCEECCCC--------
T ss_pred             EEECCCCHHHHHHHH----HC---CCCCCCCC--CCC---CC-CCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCHHH
T ss_conf             243464056788864----20---13566420--012---46-6555302256668999982998417607886-64799


Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999861899899968778666756777600489999999999999999
Q T0607           419 MLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYS  466 (471)
Q Consensus       419 ~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~  466 (471)
                      .|.....|+|++.+||+..  ++|++|||++++++.+++++|.++|.+
T Consensus       287 ~~~~~~~GiPtv~~Gpg~~--~~H~~~E~v~i~~l~~~~~~l~~~~~~  332 (340)
T 2fvg_A          287 RYARTAYGVPAGVISTPAR--YIHSPNSIIDLNDYENTKKLIKVLVEE  332 (340)
T ss_dssp             ------CCSCEEEEEEEEE--ESSTTCEEEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCEEEECCCCC--CCCCCCEEEEHHHHHHHHHHHHHHHHC
T ss_conf             9998679998999880506--665622088899999999999999983


No 30 
>2cf4_A Protein PH0519, phtet1-12S; aminopeptidase, metalloprotein, hyperthermophIle, archaea, tetrahedral, hydrolase; 3.08A {Pyrococcus horikoshii}
Probab=99.93  E-value=8.3e-29  Score=195.02  Aligned_cols=330  Identities=13%  Similarity=0.027  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf             99999999961789798866666665479999999999999835488417897538992489998737998879997340
Q T0607            18 EILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHL   97 (471)
Q Consensus        18 ~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~   97 (471)
                      +++++|++||+|||+|++          +.+++++|.+||++++    ++++    +..+||+++++ ++.|.|+|.|||
T Consensus         3 ~~~~~l~~Lv~ipS~sg~----------E~~~~~~l~~~l~~~g----~~~~----d~~gnlia~~~-~~~p~i~~~aH~   63 (332)
T 2cf4_A            3 SMIEKLKKFTQIPGISGY----------EERIREEIIREIKDFA----DYKV----DAIGNLIVELG-EGEERILFMAHM   63 (332)
T ss_dssp             CCHHHHHHHHHSCCCTTC----------CHHHHHHHHHTTTTSS----CCEE----CSSSCEEECCS-CSSCCCEEEEEC
T ss_pred             HHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC----CEEE----CCCCEEEEEEC-CCCCEEEEEECC
T ss_conf             899999999739997977----------7999999999998659----9898----57876999988-999869999347


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             32328877677888635433454213564222420358999998876314787773689981564336446999999977
Q T0607            98 DKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLK  177 (471)
Q Consensus        98 DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~  177 (471)
                      ||||.+..+.|+       ....+++|+|..|+|+++++.+.++....+.   .+.+...+...++....+....     
T Consensus        64 DTv~~~~~~~~~-------~g~~~~~g~g~~d~k~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----  128 (332)
T 2cf4_A           64 DEIGLLITGITD-------EGKLRFRKVGGIDDRLLYGRHVNVVTEKGIL---DGVIGATPPHLSLERDKSVIPW-----  128 (332)
T ss_dssp             CCCEEEEEEECT-------TSCEEEEEESCCCGGGTTTCEEEEECSSCEE---EEECCCCCCSSCSSCCCSCCCT-----
T ss_pred             CCCCCCCCCCCC-------CCCEEEECCCCCCCCCCCCCEEEEEECCCCC---CCEECCEEEEEEECCCCCCCHH-----
T ss_conf             736767875132-------8987777366416655454189998037741---0215110134300234353103-----


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             64289608997687776877655888510236888898644776344567741478999999999997400245021331
Q T0607           178 ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQ  257 (471)
Q Consensus       178 ~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g  257 (471)
                      ....     ...................++.........+  ...|++. .....++...+...+..+..........  
T Consensus       129 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~--  198 (332)
T 2cf4_A          129 YDLV-----IDIGAESKEEALELVKPLDFAVFKKHFSVLN--GKYVSTR-GLDDRFGVVALIEAIKDLVDHELEGKVI--  198 (332)
T ss_dssp             TSCC-----BBCCCSSHHHHHTTCCTTCEEEECCCCEECS--SSEEECT-THHHHHHHHHHHHHHHSSGGGCCSSCCE--
T ss_pred             HHHH-----CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC--CCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCC--
T ss_conf             3320-----0002321012332332234136653479963--6322345-3456310355689999987421356533--


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEE
Q ss_conf             01444300089999998633455565421110012320010123333221001201302100057851303547489999
Q T0607           258 LYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKL  337 (471)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~  337 (471)
                                                                         ...+.....+........+.++..+...+
T Consensus       199 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (332)
T 2cf4_A          199 ---------------------------------------------------FAFTVQEEVGLKGAKFLANHYYPQYAFAI  227 (332)
T ss_dssp             ---------------------------------------------------EEEESSCTTTSHHHHHHTTTCCCSSEEEC
T ss_pred             ---------------------------------------------------CCCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf             ---------------------------------------------------33100221145556521102314443210


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH
Q ss_conf             75127878889999999999997323663389998315767766899888999999999998369765234427765568
Q T0607           338 SMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFM  417 (471)
Q Consensus       338 d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~  417 (471)
                      +.|..........            ............  ..+    ..++.+......+.++.+..+......||  +|+
T Consensus       228 ~~~~~~~~~~~~~------------~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~gg--tDa  287 (332)
T 2cf4_A          228 DSFACCSPLTGDV------------KLGKGPVIRAVD--NSA----IYSRDLARKVWSIAEKNGIEIQIGVTGGG--TDA  287 (332)
T ss_dssp             CEEECSSSSSTTC------------CTTSCCEEEEEC--SSC----BCCHHHHHHHHHHHHTTTCCCEEEECSSC--CGG
T ss_pred             CCCCHHHCCCCHH------------HHCCCCCEEECC--CCC----CCCHHHHHHHHHHHHHHCCCCEEECCCCC--HHH
T ss_conf             1220010021001------------103444133024--666----66857767799999996999699714601--099


Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99998618998999687786667567776004899999999999999999
Q T0607           418 SMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF  467 (471)
Q Consensus       418 ~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l  467 (471)
                      ++|.   .++|++.+|++.  .++|++|||++++++.+.+++|.+++.+|
T Consensus       288 ~~~~---~gip~v~ig~~~--~~~H~~~E~v~i~~l~~~~~ll~~~~~~l  332 (332)
T 2cf4_A          288 SAFQ---DRSKTLALSVPI--KYLHSEVETLHLNDLEKLVKLIEALAFEL  332 (332)
T ss_dssp             GGTT---TSSCEEEEEEEE--ESTTTTTCEEEHHHHHHHHTTSSTTTTTC
T ss_pred             HHHH---CCCCEEEEECCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             9997---689989997580--77877121999999999999999999759


No 31 
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=99.92  E-value=6.3e-26  Score=177.19  Aligned_cols=335  Identities=11%  Similarity=0.004  Sum_probs=158.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC
Q ss_conf             99999996178979886666666547999999999999983548841789753899248999873799887999734032
Q T0607            20 LPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDK   99 (471)
Q Consensus        20 i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~Dv   99 (471)
                      +++|++||+|||+|++++         .+++++|.+||++++   +++++    +..+||+++++| +.|+|+|.+||||
T Consensus        12 ~elL~~Lv~ipS~sg~E~---------~~i~~~l~~~l~~~g---~~v~~----D~~GNvia~~~g-~~p~lll~~H~Dt   74 (354)
T 2vpu_A           12 WKLMQEIIEAPGVSGYEH---------LGIRDIVVDVLKEVA---DEVKV----DKLGNVIAHFKG-SSPRIMVAAHMDK   74 (354)
T ss_dssp             HHHHHHHHHSCCBTTCGG---------GTHHHHHHHHHHTTC---SEEEE----CTTCCEEEEECC-SSSEEEEECCCCB
T ss_pred             HHHHHHHHCCCCCCCCHH---------HHHHHHHHHHHHHCC---CEEEE----ECCCCEEEEECC-CCCEEEEEECCCC
T ss_conf             999999973999596528---------999999999999719---96999----069848999889-9965999832567


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             3288776778886354334542135--64222420358999998876314787773689981564336446999999977
Q T0607           100 QPEMSGWSDDLHPWKPVLKNGLLYG--RGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLK  177 (471)
Q Consensus       100 Vp~~~~~~w~~~Pf~~~~~~~~~~G--rG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~  177 (471)
                      ||.+..      |   ..+++.+++  +|..|+|+.+.+.+.+   +...........+++..++|.+..+...+...  
T Consensus        75 vp~~~~------~---~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--  140 (354)
T 2vpu_A           75 IGVMVN------H---IDKDGYLHIVPIGGVLPETLVAQRIRF---FTEKGERYGVVGVLPPHLRRGQEDKGSKIDWD--  140 (354)
T ss_dssp             CEEEEE------E---ECTTSCEEEEEESSCCGGGGTTCEEEE---EETTEEEEEEECCCCSTTC---------CCGG--
T ss_pred             CCCCCC------C---CCCCCCEEEEECCCCCHHHHHHHHHHH---HHHCCCCCCEEEEEEEEEEECCCCCCCCCCHH--
T ss_conf             898387------3---767984899844870465676678788---76069743216876545661343334321077--


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             64289608997687776877655888510236888898644776344567741478999999999997400245021331
Q T0607           178 ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQ  257 (471)
Q Consensus       178 ~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g  257 (471)
                       ... .+   .............+..+..+.....+...+..  .|+. .+....+++..+..+...+............
T Consensus       141 -~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  212 (354)
T 2vpu_A          141 -QIV-VD---VGASSKEEAEEMGFRVGTVGEFAPNFTRLNEH--RFAT-PYLDDRICLYAMIEAARQLGDHEADIYIVGS  212 (354)
T ss_dssp             -GCC-EE---CSCSSHHHHHHTTCCTTCEEEECCCCEECSSS--EEEC-TTHHHHHHHHHHHHHHHHCCCCSSEEEEEEC
T ss_pred             -HHH-HH---CCCCCHHHHCCCCEEECEEEEEEEEEEEECCC--EEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             -753-11---16444655136731102156544469995241--3772-4445642034459999998640144310001


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEE
Q ss_conf             01444300089999998633455565421110012320010123333221001201302100057851303547489999
Q T0607           258 LYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKL  337 (471)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~  337 (471)
                      .                                                   +..+    +........+.++.......
T Consensus       213 ~---------------------------------------------------~~~~----g~~~~~~~~~~~~~~~~~~~  237 (354)
T 2vpu_A          213 V---------------------------------------------------QEEV----GLRGARVASYAINPEVGIAM  237 (354)
T ss_dssp             S---------------------------------------------------CCTT----TSHHHHHHHHHHCCSEEEEE
T ss_pred             C---------------------------------------------------EEEC----CCCCCCCCCCCCCCCCCEEE
T ss_conf             2---------------------------------------------------0331----41034222333345410122


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCEEECCCCHHH
Q ss_conf             75127878889999999999997323663389998315767766899888999999999998-36976523442776556
Q T0607           338 SMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMT-YYDKPAAYMGEGGTIPF  416 (471)
Q Consensus       338 d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~gGt~~~  416 (471)
                      +.+........          ...........+.....        ...+............ ..+..+.....+| ++|
T Consensus       238 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gtD  298 (354)
T 2vpu_A          238 DVTFAKQPHDK----------GKIVPELGKGPVMDVGP--------NINPKLRAFADEVAKKYEIPLQVEPSPRPT-GTD  298 (354)
T ss_dssp             EEEECCCTTST----------TCCCCCTTSCCEEEEST--------TSCHHHHHHHHHHHHHTTCCCEEEECCSCC-SST
T ss_pred             EEEECCCCCHH----------HHHHHHHCCCCCCCCCC--------CCCCCHHHHHHHHHHHHCCCCCEEEECCCC-CCH
T ss_conf             02323552025----------56667643540002443--------347300134688999854786527840875-777


Q ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999861899899968778666756777600489999999999999999971
Q T0607           417 MSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ  469 (471)
Q Consensus       417 ~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~  469 (471)
                      ++.|.....|+|++.+|||.  .++|++|||++++++.+++++|..+|.+|..
T Consensus       299 a~~~~~~~~Giptv~~Gpg~--~~~Ht~~E~v~i~~v~~~~~il~~~i~~l~~  349 (354)
T 2vpu_A          299 ANVMQINKEGVATAVLSIPI--RYMHSQVELADARDVDNTIKLAKALLEELKP  349 (354)
T ss_dssp             HHHHHTSTTCCEEEEEEEEE--BSTTSTTCEEEHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999857999799989142--7787544799999999999999999986550


No 32 
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A 2anp_A
Probab=99.67  E-value=1.7e-14  Score=106.42  Aligned_cols=168  Identities=18%  Similarity=0.154  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEEECCC-CCEEE
Q ss_conf             889999999998899999999999617897988666666654799999999999998354884--178975389-92489
Q T0607             3 KPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGM--TLEIVRLKN-RTPLL   79 (471)
Q Consensus         3 ~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~--~~~~~~~~~-~~~~v   79 (471)
                      +...+-.++.+-..+++.+.++.|..+.+       +...+....++++||.+.+++++....  .++.+.... ...||
T Consensus         6 ~~~~i~~~~~~i~~~~~~~~l~~l~sf~~-------R~~~s~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv   78 (299)
T 1rtq_A            6 QQATVTAWLPQVDASQITGTISSLESFTN-------RFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSV   78 (299)
T ss_dssp             CHHHHHHHGGGCCHHHHHHHHHHHHTSSC-------CCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHCCCC-------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCE
T ss_conf             07999999986199999999999608788-------67698307999999999999961615896599970588667627


Q ss_pred             EEEECCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CEEE
Q ss_conf             99873799--88799973403232887767788863543345421356422242035899999887631478777-3689
Q T0607            80 FMEIPGQI--DDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCIL  156 (471)
Q Consensus        80 ~~~~~g~~--~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~-~~~~  156 (471)
                      +++++|+.  .+.|++.+|+|+++.+....|.             .+.|+.|+..|++++|.++|.+++.+..+. ++++
T Consensus        79 i~~~~g~~~~~~~i~i~aH~Ds~~~~~~~~~~-------------~~~Ga~Dn~sGva~~le~ar~l~~~~~~~~~~i~f  145 (299)
T 1rtq_A           79 VMTITGSEAPDEWIVIGGHLDSTIGSHTNEQS-------------VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAF  145 (299)
T ss_dssp             EEEECCSSEEEEEEEEEEECCCCSSTTCCTTC-------------CCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred             EEEECCCCCCCCEEEEEEECCCCCCCCCCCCC-------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             99963888988889998102778988766788-------------88997564032999999999998732687661688


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9815643364469999999776428960899768
Q T0607           157 IIEACEESGSYDLPFYIELLKERIGKPSLVICLD  190 (471)
Q Consensus       157 ~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~  190 (471)
                      ++...||.|..|+.++++.++.......+.+..|
T Consensus       146 ~~~~~EE~GL~GS~~~a~~~~~~~~~i~~~inlD  179 (299)
T 1rtq_A          146 MAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD  179 (299)
T ss_dssp             EEESCGGGTSHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             ECCCCHHHHHCCCHHHHHHCCCCCCCCEECHHHH
T ss_conf             5006314440266999972501023301000222


No 33 
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=99.66  E-value=4.3e-15  Score=110.03  Aligned_cols=135  Identities=18%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCEEEEEEECCCC-CCEEEE
Q ss_conf             999999999617897988666666654799999999999998354884178975--389-9248999873799-887999
Q T0607            18 EILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVR--LKN-RTPLLFMEIPGQI-DDTVLL   93 (471)
Q Consensus        18 ~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~--~~~-~~~~v~~~~~g~~-~~~i~l   93 (471)
                      ++...|.+|..+.+.+  ...+..-++..+++++|+++.|++.|   ++++..+  ... ...||+++++|++ .+.|++
T Consensus         8 ~~~~~l~~l~~~~~~~--~g~R~~gs~~~~~a~~yi~~~l~~~G---~~~~~~~~~~~~~~~~Nvi~~~~g~~~~~~i~~   82 (284)
T 1tkj_A            8 NVKAHLTQLSTIAANN--GGNRAHGRPGYKASVDYVKAKLDAAG---YTTTLQQFTSGGATGYNLIANWPGGDPNKVLMA   82 (284)
T ss_dssp             HHHHHHHHHHHHHHTT--TTCCCTTSHHHHHHHHHHHHHHHHHT---CEEEEEEEEETTEEEEEEEEECSCSEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCC---CEEEEEEEECCCCCCEEEEEEEECCCCCCEEEE
T ss_conf             9999999999752689--98988999999999999999999879---917997411157654016999817999956999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCHHHHHH
Q ss_conf             73403232887767788863543345421356422242035899999887631478777-36899815643364469999
Q T0607            94 YGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGSYDLPFY  172 (471)
Q Consensus        94 ~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~-~~~~~~~~~EE~G~~g~~~~  172 (471)
                      .+|+|+||                     +|+|+.|++.+++++|++++.+++.+..+. +++++|..+||.|..|.+.+
T Consensus        83 ~aH~D~~~---------------------~~~Ga~D~~sg~a~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~  141 (284)
T 1tkj_A           83 GAHLDSVS---------------------SGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFY  141 (284)
T ss_dssp             EEECCCCT---------------------TSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHH
T ss_pred             EECCCCCC---------------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf             81202567---------------------765457876324799999999986068987544776224441002331999


Q ss_pred             HHHHHH
Q ss_conf             999776
Q T0607           173 IELLKE  178 (471)
Q Consensus       173 ~~~~~~  178 (471)
                      ++.++.
T Consensus       142 ~~~~~~  147 (284)
T 1tkj_A          142 VNNLPS  147 (284)
T ss_dssp             HHHSCH
T ss_pred             HHHHHC
T ss_conf             985211


No 34 
>3gux_A Putative Zn-dependent exopeptidase; YP_001298628.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.44  E-value=1.1e-11  Score=89.03  Aligned_cols=136  Identities=13%  Similarity=0.091  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CC----CEEEEEEECCCCCCE
Q ss_conf             999999999961789798866666665479999999999999835488417897538--99----248999873799887
Q T0607            17 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK--NR----TPLLFMEIPGQIDDT   90 (471)
Q Consensus        17 ~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~--~~----~~~v~~~~~g~~~~~   90 (471)
                      ++..+.+.+|+.|.       ++.+-++..+++++||.+.|++++... ..+.+...  .+    ..||+++++|...+.
T Consensus        27 ~~a~~~~~~l~~~g-------pR~~GS~~~~~a~~yi~~~l~~~g~~v-~~q~f~~~~~~~~~~~~~Nii~~~~g~~~~~   98 (314)
T 3gux_A           27 DSAYQYIQVQADFG-------PRVPNTQAHKECGEYLAGQLEKFGAKV-YNQYADLIAYDGTILKSRNIIGAYKPESKKR   98 (314)
T ss_dssp             HHHHHHHHHHHTTC-------CCCTTSHHHHHHHHHHHHHHHHTTCEE-EEEEEEEECTTSCEEEEEEEEEEESTTCSSE
T ss_pred             HHHHHHHHHHHCCC-------CCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEEEEEECCCCCEEEEEEEEEEECCCCCCC
T ss_conf             99999999984659-------949999999999999999999879969-9997797656774567999999817999851


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH
Q ss_conf             9997340323288776778886354334542135642224203589999988763147877736899815643364469
Q T0607            91 VLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDL  169 (471)
Q Consensus        91 i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~  169 (471)
                      |+|.+|+|+++..+.        ..........-.|+.|+..|++++|++++.+.... +..++++++...||.|..|.
T Consensus        99 ivi~AHyDs~~~~~~--------~~~~~~~~~~~~GA~DnaSGvA~lLE~Ar~l~~~~-~~~ti~fv~f~~EE~Gl~g~  168 (314)
T 3gux_A           99 ILLCAHWDSRPYADN--------DPDPKNHHTPILGVNDGASGVGVLLEIARQIQKEQ-PALGIDIVFFDSEDYGIPEF  168 (314)
T ss_dssp             EEEEEECCCCC----------------------------CHHHHHHHHHHHHHHHHSC-CSSEEEEEEECSCCC-----
T ss_pred             EEEEEECCCCCCCCC--------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHCCCCCC
T ss_conf             899984057666888--------75544566654786577513999999999742125-66532786225332175554


No 35 
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 2zeg_A 2zep_A 2afs_A
Probab=99.37  E-value=5.5e-11  Score=84.60  Aligned_cols=126  Identities=16%  Similarity=0.068  Sum_probs=93.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-----C--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             66665479999999999999835488417897538-----9--9248999873799887999734032328877677888
Q T0607            39 KWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK-----N--RTPLLFMEIPGQIDDTVLLYGHLDKQPEMSGWSDDLH  111 (471)
Q Consensus        39 ~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~-----~--~~~~v~~~~~g~~~~~i~l~~H~DvVp~~~~~~w~~~  111 (471)
                      +.+-++...++++||.+.|++++. +..++.....     .  ...||+++++|+..+.|++.+|+|+++.++...   .
T Consensus        45 R~~GS~g~~~a~~yi~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~Nvia~~~g~~~~~ivi~AHyDs~~~~~~~~---~  120 (329)
T 2afw_A           45 RYPGSPGSYAARQHIMQRIQRLQA-DWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNN---R  120 (329)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHTSSS-CCEEEEEEEEECCTTSSEEEEEEEEESSTTSSEEEEEEEECCCCCCCCBTT---B
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCC---C
T ss_conf             599897999999999999998579-971799888854557883478999996899972499961134677653455---7


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--------CCCC-CCEEEEEECCCCCC--------CHHHHHHHH
Q ss_conf             635433454213564222420358999998876314--------7877-73689981564336--------446999999
Q T0607           112 PWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQ--------GLPY-PRCILIIEACEESG--------SYDLPFYIE  174 (471)
Q Consensus       112 Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~--------~~~~-~~~~~~~~~~EE~G--------~~g~~~~~~  174 (471)
                                 .-.|+.|+..|++++|+++|.+.+.        +.++ .++++++...||.|        ..|.+++++
T Consensus       121 -----------~~pGA~DnaSGvA~lLE~AR~l~~~~~~~~~~~~~~p~~tI~fv~~~~EE~G~~~~~~~~L~GS~~~a~  189 (329)
T 2afw_A          121 -----------VFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAA  189 (329)
T ss_dssp             -----------CCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHHHH
T ss_pred             -----------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCHHHHHH
T ss_conf             -----------889977762679999999999987665422102689983399998356403756776554325799999


Q ss_pred             HHHHH
Q ss_conf             97764
Q T0607           175 LLKER  179 (471)
Q Consensus       175 ~~~~~  179 (471)
                      .+...
T Consensus       190 ~~~~~  194 (329)
T 2afw_A          190 KMAST  194 (329)
T ss_dssp             HHHTS
T ss_pred             HHHHC
T ss_conf             98752


No 36 
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=99.04  E-value=1.6e-09  Score=75.54  Aligned_cols=80  Identities=9%  Similarity=-0.073  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             88999999999998369765234427765568999986189989996877866-67567776004899999999999999
Q T0607           386 SDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPH-SNAHGPNEFLHLDMVKKLTSCVSYVL  464 (471)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~-~~~H~~~E~~~i~~l~~~~~il~~~l  464 (471)
                      +| +.++++++.++.+.......+.||  +|+++|...  |+|++.|||+... ..+|++|||++++++.+++++|.++|
T Consensus         1 nP-~~~al~~a~~~~g~~v~p~~~~g~--TDar~~~~~--g~~~~~fgP~~~~~~~~H~~nE~I~i~~l~~~~~~y~~ii   75 (88)
T 1q7l_B            1 NP-WWAAFSRVCKDMNLTLEPEIMPAA--GDNRYIRAV--GVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLL   75 (88)
T ss_dssp             CH-HHHHHHHHHHHTTCCEEEEECCSC--SHHHHHHHT--TCCEEEECCCCSCCCCTTSTTCEEEHHHHHHHHHHHHHHH
T ss_pred             CH-HHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHC--CCCCEEECCCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHH
T ss_conf             95-899999999985997278863577--414877747--7883687788786422347876156999999999999999


Q ss_pred             HHHHHC
Q ss_conf             999713
Q T0607           465 YSFSQK  470 (471)
Q Consensus       465 ~~la~~  470 (471)
                      .+|++.
T Consensus        76 ~~la~~   81 (88)
T 1q7l_B           76 PALASV   81 (88)
T ss_dssp             HHHHTC
T ss_pred             HHHHCC
T ss_conf             999669


No 37 
>3iib_A Peptidase M28; YP_926796.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.92  E-value=1.3e-08  Score=69.81  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCC--CCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             568999986189989996877866--6756777---6004899999999999999999713
Q T0607           415 PFMSMLGEQFPKAQFMITGVLGPH--SNAHGPN---EFLHLDMVKKLTSCVSYVLYSFSQK  470 (471)
Q Consensus       415 ~~~~~~~~~~~~~p~~~~G~g~~~--~~~H~~~---E~~~i~~l~~~~~il~~~l~~la~~  470 (471)
                      +|...|...  |+|++.+......  ..-|++.   |.++.+.|.+.+++++.+.+.||+.
T Consensus       375 SDh~~F~~~--GIP~~~~~~~~~~~~~~YHt~~Dt~d~id~~~l~~~~~~~~~~a~~lA~~  433 (444)
T 3iib_A          375 PDVSMLPAL--GVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANS  433 (444)
T ss_dssp             GGGTTSGGG--TCCEEEEEECCTTGGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             839999978--98289987178728898999635065589999999999999999999579


No 38 
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.56  E-value=7.5e-07  Score=58.97  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC---CCCCHHHHHHHHHHHHH
Q ss_conf             889999999999983697652344277655689999861899899968778666756777---60048999999999999
Q T0607           386 SDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPN---EFLHLDMVKKLTSCVSY  462 (471)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~---E~~~i~~l~~~~~il~~  462 (471)
                      ...+..+...+.....+ .......++|  |...|...  |+|++.+.....+..-|++.   |+++.+.+.+.+++++.
T Consensus       320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~S--D~~~F~~~--GIP~~~~~~~~~~~~yHT~~Dt~d~id~~~l~~~~~~~~~  394 (421)
T 2ek8_A          320 KNRVTDLGAAASSRLSG-VLPYGQEGRS--DHESFHAL--GIPAALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGS  394 (421)
T ss_dssp             CCHHHHHHHHHHHHHTS-CCCEEECCSS--THHHHHTT--TCCEEEEEEESCCTTTTSTTCCGGGBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-CCCCCCCCCC--HHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf             05699999987641375-3568998989--58999978--9988999899898998896455355999999999999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999713
Q T0607           463 VLYSFSQK  470 (471)
Q Consensus       463 ~l~~la~~  470 (471)
                      ++..|++.
T Consensus       395 ~~~~la~~  402 (421)
T 2ek8_A          395 AVYQAARP  402 (421)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHCC
T ss_conf             99998377


No 39 
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell membrane, disulfide bond, endocytosis, HOST- virus interaction, receptor, secreted; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 1cx8_A* 1suv_A 2nsu_A
Probab=98.53  E-value=1.1e-06  Score=57.87  Aligned_cols=93  Identities=22%  Similarity=0.256  Sum_probs=60.3

Q ss_pred             EEEEEEECCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCC
Q ss_conf             489998737998--87999734032328877677888635433454213564222420358999998876314----787
Q T0607            77 PLLFMEIPGQID--DTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQ----GLP  150 (471)
Q Consensus        77 ~~v~~~~~g~~~--~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~----~~~  150 (471)
                      .||++.++|+..  +.|++.+|.|.                       ||.|+.|+-.|.+++|+.+|.+.+.    +..
T Consensus       267 ~NVig~I~G~~~~de~VivgaH~Ds-----------------------w~~GA~Dn~SGtA~lLElaR~l~~l~~k~g~~  323 (640)
T 3kas_A          267 LNIFGVIKGFVEPDHYVVVGAQRDA-----------------------WGPGAAKSGVGTALLLKLAQMFSDMVLKDGFQ  323 (640)
T ss_dssp             EEEEEEECCSSEEEEEEEEEEECCC-----------------------SSCCTTTTHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             EEEEEEEECCCCCCCEEEEECCCCC-----------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8899998688888736998433244-----------------------16898787600999999999999868752899


Q ss_pred             CCC-EEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEECCCC
Q ss_conf             773-6899815643364469999999776428-96089976877
Q T0607           151 YPR-CILIIEACEESGSYDLPFYIELLKERIG-KPSLVICLDSG  192 (471)
Q Consensus       151 ~~~-~~~~~~~~EE~G~~g~~~~~~~~~~~~~-~~d~~~~~~~~  192 (471)
                      |.| ++++..+.||.|..|...+++.+...+. +.-+.+..|..
T Consensus       324 P~RtI~F~sw~gEE~Gl~GS~~~ve~~~~~l~~~~vAyiN~D~~  367 (640)
T 3kas_A          324 PSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKA  367 (640)
T ss_dssp             CSEEEEEEEESSGGGTSHHHHHHHHHTTTTGGGTEEEEEECTTC
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHCEEEEEEECCC
T ss_conf             87349999977744565442999985712333278999973255


No 40 
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, calcium cation, chloride anion, zinc IONS, dipeptidase; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* 3d7g_A* 3d7h_A* ...
Probab=98.52  E-value=9e-07  Score=58.49  Aligned_cols=53  Identities=17%  Similarity=0.057  Sum_probs=27.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH---CCCCCC-CEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             6422242035899999887631---478777-3689981564336446999999977
Q T0607           125 RGGADDGYSAYASLTAIRALEQ---QGLPYP-RCILIIEACEESGSYDLPFYIELLK  177 (471)
Q Consensus       125 rG~~D~k~~~~~~l~a~~~l~~---~~~~~~-~~~~~~~~~EE~G~~g~~~~~~~~~  177 (471)
                      .|+.|+-.|.+++|+.+|.+.+   .+..|. +++++..+.||.|..|...|++.+.
T Consensus       340 ~GA~Dn~SGtA~lLEiAR~l~~l~~~g~~P~RtI~F~~w~gEE~GLlGS~~~ve~~~  396 (707)
T 3fed_A          340 FGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLLGSTEWAEENV  396 (707)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCC
T ss_conf             998879855899999999999877517888736999987884377535699998571


No 41 
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PSI, protein structure initiative; 2.80A {Thermotoga maritima}
Probab=96.97  E-value=0.0041  Score=35.84  Aligned_cols=81  Identities=9%  Similarity=-0.049  Sum_probs=56.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCE-EE-----CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             689988899999999999836976523-44-----277655689999861899899968778666756777600489999
Q T0607           381 NAPLLSDWLAKAASEASMTYYDKPAAY-MG-----EGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVK  454 (471)
Q Consensus       381 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~-----~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~  454 (471)
                      .++..++.+.+.+++.+++.. .|... ..     .||+ +++.+++.  .|+|++.+|....  .+|++.|-+.+.|+.
T Consensus       364 ~t~~~~~~~~~~~~~~a~~~~-Ip~Q~~~~~r~d~~gGs-Tig~~~a~--~Gi~tvdiG~P~l--~MHS~rE~~~~~D~~  437 (450)
T 2glf_A          364 STNDAHAEFVARVRKVLNEQG-VIWQVATLGKVDQGGGG-TIAKFFAE--RGSDVIDMGPALL--GMHSPFEISSKADLF  437 (450)
T ss_dssp             TCCBCCHHHHHHHHHHHHHTT-CCEEECCSSSTTSCCCC-CTHHHHHT--TTSCEEEEECEEB--STTSSSEEEEHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCC-CHHHHHHC--CCCCEEEECHHHH--HHHHHHHHHHHHHHH
T ss_conf             356548999999999998679-98179886058899735-09999866--7998898558775--502688776258899


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q T0607           455 KLTSCVSYVLYSF  467 (471)
Q Consensus       455 ~~~~il~~~l~~l  467 (471)
                      ..++++..++.+|
T Consensus       438 ~~~~l~~af~e~l  450 (450)
T 2glf_A          438 ETYVAYRSLMEKL  450 (450)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999639


No 42 
>3l6s_A Aspartyl aminopeptidase; hydrolase, structural genomics consortium, SGC, metal-binding, metalloprotease, protease, zinc; HET: SD3; 2.20A {Homo sapiens}
Probab=96.87  E-value=0.004  Score=35.86  Aligned_cols=80  Identities=13%  Similarity=-0.026  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEE----CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             889999999999983697652344----2776556899998618998999687786667567776004899999999999
Q T0607           386 SDWLAKAASEASMTYYDKPAAYMG----EGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVS  461 (471)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~~----~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~  461 (471)
                      ++.....+++++++.+........    .||| +...+.+ ...|++++.+|+...  .+|+|.|-+++.|+...+++|.
T Consensus       394 ~~~~~~~~~~la~~~~Ip~Q~~~~r~d~~gGs-Tig~i~a-s~~Gi~tiDiGiP~l--sMHS~~E~~~~~Dv~~~~~ll~  469 (485)
T 3l6s_A          394 NAVSEALIREVANKVKVPLQDLMVRNDTPCGT-TIGPILA-SRLGLRVLDLGSPQL--AMHSIREMACTTGVLQTLTLFK  469 (485)
T ss_dssp             CHHHHHHHHHHHHHHTCCCEEECCCTTSCCCC-CHHHHHH-HHHTCEEEEEECEEE--STTSSSEEEESHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH-HHHHHHH-HCCCCCEEEECHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999998699888725448888713-7999997-378996899377872--2205887744687999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999971
Q T0607           462 YVLYSFSQ  469 (471)
Q Consensus       462 ~~l~~la~  469 (471)
                      ..+..|.+
T Consensus       470 aF~e~~~~  477 (485)
T 3l6s_A          470 GFFELFPS  477 (485)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99987887


No 43 
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=96.24  E-value=0.022  Score=31.35  Aligned_cols=75  Identities=12%  Similarity=-0.063  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEE-----CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8889999999999983697652344-----27765568999986189989996877866675677760048999999999
Q T0607           385 LSDWLAKAASEASMTYYDKPAAYMG-----EGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSC  459 (471)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~i  459 (471)
                      .++.+...+++.+++.. .|.....     .+|++++..+++.  .|++++.+|....  .+|++.|.+.++|+...+++
T Consensus       377 ~~~~~~~~~~~~a~~~~-Ip~Q~~~~~r~d~~gGsTig~i~a~--~Gi~tvdiGiP~l--~MHS~rE~~~~~D~~~~~~l  451 (458)
T 1y7e_A          377 ADAELVSYIRQLLNKNN-IAWQVATLGKVEEGGGGTVAKFLAG--YGIRTIDMGPAVI--SMHSPMEITSKFDLYNAYLA  451 (458)
T ss_dssp             -CHHHHHHHHHHHHHHT-CCEEEEEECC-----CHHHHHHHHH--HTCEEEEECCEEB--STTSSSEEEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHHC--CCCCEEECCHHHH--HHHHHHHHHCHHHHHHHHHH
T ss_conf             38999999999999869-9921788516889985568999867--7988998478776--65689988541889999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q T0607           460 VSYVL  464 (471)
Q Consensus       460 l~~~l  464 (471)
                      |...+
T Consensus       452 l~aF~  456 (458)
T 1y7e_A          452 YKAFY  456 (458)
T ss_dssp             HHHTT
T ss_pred             HHHHH
T ss_conf             99995


No 44 
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structural genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}
Probab=95.81  E-value=0.0028  Score=36.82  Aligned_cols=77  Identities=9%  Similarity=-0.040  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEE----ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             88999999999998369765234----42776556899998618998999687786667567776004899999999999
Q T0607           386 SDWLAKAASEASMTYYDKPAAYM----GEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVS  461 (471)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~----~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~  461 (471)
                      ++.+...+++.+++.........    ..|||  +++.+.....|+|++.+|++..  .+|++.|.++++|+...+++|.
T Consensus       344 ~~~~~~~l~~~a~~~~Ip~Q~~~~~~~~~gGs--t~g~~~~s~~Gi~t~diGiP~~--~mHS~~E~~~~~D~~~~~~ll~  419 (428)
T 2ijz_A          344 NSETAGFFRHLCQDSEVPVQSFVTRSDMGCGS--TIGPITASQVGVRTVDIGLPTF--AMHSIRELAGSHDLAHLVKVLG  419 (428)
T ss_dssp             CHHHHTTTTHHHHHTCCCCCBCCCCSSCCCCC--CCSTTTGGGGSCCEEEECCCCC--SCSSSSCCCCSSHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH--HHHHHHHHCCCCCEEEECHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999988799889978458999735--8999998379997899657871--0136776613899999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q T0607           462 YVLYS  466 (471)
Q Consensus       462 ~~l~~  466 (471)
                      .++..
T Consensus       420 af~~~  424 (428)
T 2ijz_A          420 AFYAS  424 (428)
T ss_dssp             HHTTC
T ss_pred             HHHHC
T ss_conf             99834


No 45 
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=95.57  E-value=0.016  Score=32.16  Aligned_cols=75  Identities=17%  Similarity=0.010  Sum_probs=50.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEE------ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9888999999999998369765234------4277655689999861899899968778666756777600489999999
Q T0607           384 LLSDWLAKAASEASMTYYDKPAAYM------GEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLT  457 (471)
Q Consensus       384 ~~~~~~~~~~~~a~~~~~~~~~~~~------~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~  457 (471)
                      ..++.+...+++.+++.. .|....      ..||+ ++..+.++  .|+|++.+|+...  .+|++.|-+.++|+...+
T Consensus       379 ~a~~~~~~~l~~~a~~~~-Ip~Q~~~~~r~d~~gGs-Tig~i~a~--~Gi~tvDiGiP~l--~MHS~rE~~~~~Di~~~~  452 (461)
T 2glj_A          379 DANPEYIAELRRILSKES-VNWQTAELGKVDQGGGG-TIAYILAE--YGMQVIDCGVALL--NMHAPWEISSKADIYETK  452 (461)
T ss_dssp             CCCHHHHHHHHHHHHHTC-CCEEECCSSSSSSSCCC-CTHHHHHT--TTCBCCBBCCEEE--STTSSSEEEEHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCC-CHHHHHHC--CCCCEEEECHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf             348999999999999769-98158886258999846-48999857--7998898268775--432688774348899999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q T0607           458 SCVSYVL  464 (471)
Q Consensus       458 ~il~~~l  464 (471)
                      ++|...+
T Consensus       453 ~l~~aF~  459 (461)
T 2glj_A          453 NGYSAFL  459 (461)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
T ss_conf             9999996


No 46 
>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum}
Probab=72.67  E-value=3.3  Score=17.82  Aligned_cols=55  Identities=7%  Similarity=-0.075  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHCCCCEEEECCCC-CCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5689999861899899968778-666756777---600489999999999999999971
Q T0607           415 PFMSMLGEQFPKAQFMITGVLG-PHSNAHGPN---EFLHLDMVKKLTSCVSYVLYSFSQ  469 (471)
Q Consensus       415 ~~~~~~~~~~~~~p~~~~G~g~-~~~~~H~~~---E~~~i~~l~~~~~il~~~l~~la~  469 (471)
                      +|-..|.....++|+..+-... ...--|++.   ++++.+.+....+++..+|..+-+
T Consensus       297 SDErqf~spg~dlPV~sl~r~~~~y~EYHTS~Dn~d~In~~gL~~s~~~i~~iI~~le~  355 (435)
T 3k9t_A          297 SDERQFSSPGINLSVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIEN  355 (435)
T ss_dssp             STHHHHTSTTTCCCEEEEESSCTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             67665556565786448850466765679975423235888999999999999999864


No 47 
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=67.28  E-value=4.3  Score=17.11  Aligned_cols=70  Identities=1%  Similarity=-0.047  Sum_probs=47.7

Q ss_pred             CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             474899997512787888999999999999732366338999831576776689988899999999999836976523
Q T0607           330 RPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAY  407 (471)
Q Consensus       330 p~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  407 (471)
                      .+--++.+++|...+..++.++..++..+.+...+.+.+++.-.        .+.....+..++.+..++++-.+.-.
T Consensus        12 ~~Gq~~d~~~~VsT~~ELqr~L~EL~~~i~r~GAr~V~IsIsA~--------~~~qA~~~~~ii~r~~~~LGY~DINV   81 (106)
T 1qys_A           12 DNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITAR--------TKKEAEKFAAILIKVFAELGYNDINV   81 (106)
T ss_dssp             CSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECS--------SHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--------CHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             79818889999805489999999999999871764589999966--------67889999999999999839763189


No 48 
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=63.57  E-value=5.1  Score=16.67  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=47.5

Q ss_pred             CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             474899997512787888999999999999732366338999831576776689988899999999999836976523
Q T0607           330 RPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAY  407 (471)
Q Consensus       330 p~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  407 (471)
                      .+--++.+++|...+..++.+++.++..+.+...+...+++.-.        .+.....+..++....++++-.+.-.
T Consensus        14 ~~Gq~~e~~~~VsT~~EL~r~L~EL~~~i~r~GAr~V~IsIsA~--------~~~qA~~~~~ii~r~~~~LGY~DINV   83 (96)
T 2jvf_A           14 RDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITISAE--------NDEQAKELLELIARLLQKLGYKDINV   83 (96)
T ss_dssp             ETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECS--------SHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--------CHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             69828889999814389999999999999861764489999965--------66789999999999999839763189


No 49 
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=43.93  E-value=11  Score=14.68  Aligned_cols=60  Identities=15%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             9999999-----99889999999999961789798---86666666547999999999999983548841
Q T0607             5 QGLYDYI-----CQQWQEEILPSLCDYIKIPNKSP---HFDAKWEEHGYMEQAVNHIANWCKSHAPKGMT   66 (471)
Q Consensus         5 ~~~~~~i-----~~~~~~~~i~~l~~lv~ipS~s~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~   66 (471)
                      .++++|+     ++..++++++-+.+++..||-|.   .+.+....+  .+.+...+..|-.+.|..+|.
T Consensus        16 ~~~i~~~~N~~~~E~~~~~~~~~F~~~~EHPs~SDLI~YPE~~~~~S--P~~ii~EIK~W~~~~Gr~~Fr   83 (85)
T 1gxg_A           16 KKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGS--PEAVIKEIKEWRAANGKSGFK   83 (85)
T ss_dssp             HHHHHHHHHTSSSSHHHHHHHHHHHHTTCCTTTTHHHHSCCTTCCSS--HHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999998064652568778999999980877786255678888888--589999999999972853225


No 50 
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=42.14  E-value=11  Score=14.51  Aligned_cols=52  Identities=13%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             9889999999999961789798---86666666547999999999999983548841
Q T0607            13 QQWQEEILPSLCDYIKIPNKSP---HFDAKWEEHGYMEQAVNHIANWCKSHAPKGMT   66 (471)
Q Consensus        13 ~~~~~~~i~~l~~lv~ipS~s~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~   66 (471)
                      +++.|.+|+-+.+++..|+-|.   .+......+  .+.+.+.+.+|-++.|..||.
T Consensus        31 e~~~d~l~~hF~~iteHP~gsDLIfYP~~~~eds--PegIv~~IKeWRa~nG~PgFK   85 (87)
T 1unk_A           31 DDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDS--PEGIVKEIKEWRAANGKPGFK   85 (87)
T ss_dssp             CHHHHHHHHHHHHHHCCTTTTHHHHSCCSSCCCS--HHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--HHHHHHHHHHHHHHCCCCCCC
T ss_conf             8999999999999704999885256389988789--899999999999974997556


No 51 
>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=37.81  E-value=13  Score=14.09  Aligned_cols=31  Identities=16%  Similarity=0.082  Sum_probs=12.8

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf             20358999998876314787773689981564
Q T0607           131 GYSAYASLTAIRALEQQGLPYPRCILIIEACE  162 (471)
Q Consensus       131 k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~E  162 (471)
                      ++|.++.+.+++++.+.+. +.+++.++..+|
T Consensus       307 M~GaA~v~g~~~a~a~~~~-~~nv~~~~~~~e  337 (515)
T 3kzw_A          307 MCGAANVVGIIEAASRLQL-PVNIVGVLACAE  337 (515)
T ss_dssp             GHHHHHHHHHHHHHHHTTC-SCEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCC-CCCEEEEEEHHH
T ss_conf             2557999999999997288-765489997122


No 52 
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1
Probab=28.85  E-value=19  Score=13.18  Aligned_cols=37  Identities=8%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             98889999999998899999999999617897988666
Q T0607             1 MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDA   38 (471)
Q Consensus         1 ~~~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~   38 (471)
                      |++++.+.+|+ ..-.+.+.+.--.|-++.++.++.|.
T Consensus         1 ~lt~~~~~~~l-~~~~~~~~~~~d~Ln~LD~~vGDGD~   37 (192)
T 3cr3_A            1 LLTIDTTIEWL-GKFNEKIQENKAYLSELDGPIGDGDH   37 (192)
T ss_dssp             CCCHHHHHHHH-HHHHHHHHHTHHHHHHHTTTTSCSCH
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             99889999999-99999999909999986778777508


No 53 
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=24.59  E-value=22  Score=12.70  Aligned_cols=16  Identities=6%  Similarity=-0.002  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999999713
Q T0607           455 KLTSCVSYVLYSFSQK  470 (471)
Q Consensus       455 ~~~~il~~~l~~la~~  470 (471)
                      .++..|.++|.+.++.
T Consensus       484 ~~vr~l~~~l~~~~~~  499 (503)
T 1gyt_A          484 RPVALLAQFLLNRAGF  499 (503)
T ss_dssp             TTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             6999999999977562


No 54 
>2no8_A Colicin-E2 immunity protein; helix bundle, immune system; NMR {Escherichia coli}
Probab=21.91  E-value=25  Score=12.37  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             89999999999961789798---86666666547999999999999983548841
Q T0607            15 WQEEILPSLCDYIKIPNKSP---HFDAKWEEHGYMEQAVNHIANWCKSHAPKGMT   66 (471)
Q Consensus        15 ~~~~~i~~l~~lv~ipS~s~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~   66 (471)
                      ..+++|+-+.+++..|+-|.   .+......  ..+.+.+.+.+|-++.|..||.
T Consensus        32 ~~d~l~~hF~~iteHP~gsDLIfYP~~~~ed--sPegI~~~IKeWRa~nGkPgFK   84 (86)
T 2no8_A           32 DDNKLVREFERLTEHPDGSDLIYYPRDDRED--SPEGIVKEIKEWRAANGKSGFK   84 (86)
T ss_dssp             HHHHHHHHHHHHHCCSSHHHHHHSCCSSSCC--SHHHHHHHHHHHHHHHTCCCCB
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8999999999980499988635629998878--8889999999999974997667


Done!