Query T0607 YP_094844.1, LEGIONELLA PNEUMOPHILA , 471 residues Match_columns 471 No_of_seqs 126 out of 5489 Neff 10.4 Searched_HMMs 22458 Date Mon Jul 5 09:28:42 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0607.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0607.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zog_A Cytosolic non-specific 100.0 0 0 449.5 42.4 456 2-471 6-478 (479) 2 2pok_A Peptidase, M20/M25/M40 100.0 0 0 438.7 44.4 444 5-467 32-480 (481) 3 3dlj_A Beta-Ala-His dipeptidas 100.0 0 0 422.2 45.3 454 5-470 14-484 (485) 4 1cg2_A Carboxypeptidase G2; me 100.0 0 0 376.7 33.8 381 5-471 8-393 (393) 5 1vgy_A Succinyl-diaminopimelat 100.0 0 0 352.9 36.3 374 16-470 5-380 (393) 6 2qyv_A XAA-His dipeptidase; YP 100.0 0 0 352.4 34.2 420 19-470 13-487 (487) 7 1lfw_A PEPV; hydrolase, dipept 100.0 0 0 342.2 37.6 422 8-470 6-467 (470) 8 2f7v_A Aectylcitrulline deacet 100.0 0 0 351.6 28.2 362 14-467 6-368 (369) 9 3isz_A Succinyl-diaminopimelat 100.0 0 0 328.3 40.9 373 16-469 2-376 (377) 10 1fno_A Peptidase T; metallo pe 100.0 0 0 340.0 29.5 370 17-470 2-407 (417) 11 2rb7_A Peptidase, M20/M25/M40 100.0 0 0 317.5 32.7 352 14-470 3-361 (364) 12 3gb0_A Peptidase T; NP_980509. 100.0 0 0 319.2 31.3 359 15-469 4-373 (373) 13 3ife_A Peptidase T; metallopep 100.0 0 0 317.7 31.9 383 3-470 14-433 (434) 14 3ct9_A Acetylornithine deacety 100.0 0 0 317.7 30.3 346 12-467 6-354 (356) 15 1ysj_A Protein YXEP; M20 famil 100.0 2.6E-37 1.2E-41 247.7 26.7 369 13-469 28-401 (404) 16 3io1_A Aminobenzoyl-glutamate 100.0 4.1E-35 1.8E-39 234.1 27.0 382 5-471 3-435 (445) 17 1z2l_A Allantoate amidohydrola 100.0 2.2E-36 9.7E-41 242.0 20.1 383 13-471 5-413 (423) 18 2v8h_A Beta-alanine synthase; 100.0 9.4E-35 4.2E-39 231.9 26.8 361 16-471 31-449 (474) 19 1q7l_A Aminoacylase-1; catalys 100.0 1.2E-35 5.5E-40 237.3 16.8 186 14-213 7-198 (198) 20 1xmb_A IAA-amino acid hydrolas 100.0 4.2E-28 1.9E-32 190.6 29.5 368 16-471 27-405 (418) 21 1vhe_A Aminopeptidase/glucanas 100.0 1.2E-31 5.3E-36 212.6 5.9 349 16-471 6-356 (373) 22 1ylo_A Hypothetical protein SF 100.0 2.6E-30 1.2E-34 204.3 12.2 334 20-471 6-340 (348) 23 1y0y_A FRV operon protein FRVX 100.0 1.8E-30 7.9E-35 205.4 6.9 342 20-471 9-352 (353) 24 2gre_A Deblocking aminopeptida 100.0 1.4E-29 6.4E-34 199.7 9.8 341 13-466 2-344 (349) 25 3isx_A Endoglucanase; TM1050, 100.0 6.9E-30 3.1E-34 201.7 7.8 335 8-465 3-342 (343) 26 3kl9_A PEPA, glutamyl aminopep 100.0 8.4E-30 3.8E-34 201.2 6.7 342 17-470 3-347 (355) 27 1vho_A Endoglucanase; structur 100.0 1.5E-29 6.5E-34 199.7 7.6 334 16-471 4-338 (346) 28 3cpx_A Aminopeptidase, M42 fam 99.9 2.3E-28 1E-32 192.3 2.8 314 6-467 7-321 (321) 29 2fvg_A Endoglucanase; TM1049, 99.9 6.4E-28 2.8E-32 189.6 2.7 327 22-466 3-332 (340) 30 2cf4_A Protein PH0519, phtet1- 99.9 8.3E-29 3.7E-33 195.0 -4.8 330 18-467 3-332 (332) 31 2vpu_A TET3, 354AA long hypoth 99.9 6.3E-26 2.8E-30 177.2 6.5 335 20-469 12-349 (354) 32 1rtq_A Bacterial leucyl aminop 99.7 1.7E-14 7.4E-19 106.4 19.4 168 3-190 6-179 (299) 33 1tkj_A Aminopeptidase, SGAP; d 99.7 4.3E-15 1.9E-19 110.0 14.9 135 18-178 8-147 (284) 34 3gux_A Putative Zn-dependent e 99.4 1.1E-11 4.7E-16 89.0 16.5 136 17-169 27-168 (314) 35 2afw_A Glutaminyl-peptide cycl 99.4 5.5E-11 2.5E-15 84.6 16.2 126 39-179 45-194 (329) 36 1q7l_B Aminoacylase-1; catalys 99.0 1.6E-09 7.1E-14 75.5 10.1 80 386-470 1-81 (88) 37 3iib_A Peptidase M28; YP_92679 98.9 1.3E-08 6E-13 69.8 11.0 54 415-470 375-433 (444) 38 2ek8_A Aminopeptidase; metallo 98.6 7.5E-07 3.4E-11 59.0 10.8 80 386-470 320-402 (421) 39 3kas_A Transferrin receptor pr 98.5 1.1E-06 5.1E-11 57.9 11.0 93 77-192 267-367 (640) 40 3fed_A Glutamate carboxypeptid 98.5 9E-07 4E-11 58.5 10.4 53 125-177 340-396 (707) 41 2glf_A Probable M18-family ami 97.0 0.0041 1.8E-07 35.8 8.5 81 381-467 364-450 (450) 42 3l6s_A Aspartyl aminopeptidase 96.9 0.004 1.8E-07 35.9 7.8 80 386-469 394-477 (485) 43 1y7e_A Probable M18-family ami 96.2 0.022 9.6E-07 31.4 8.1 75 385-464 377-456 (458) 44 2ijz_A Probable M18-family ami 95.8 0.0028 1.3E-07 36.8 2.0 77 386-466 344-424 (428) 45 2glj_A Probable M18-family ami 95.6 0.016 7.1E-07 32.2 5.1 75 384-464 379-459 (461) 46 3k9t_A Putative peptidase; str 72.7 3.3 0.00015 17.8 11.3 55 415-469 297-355 (435) 47 1qys_A TOP7; alpha-beta, novel 67.3 4.3 0.00019 17.1 6.1 70 330-407 12-81 (106) 48 2jvf_A De novo protein M7; tet 63.6 5.1 0.00023 16.7 6.2 70 330-407 14-83 (96) 49 1gxg_A Colicin E8 immunity pro 43.9 11 0.00047 14.7 4.0 60 5-66 16-83 (85) 50 1unk_A Colicin E7; immunity pr 42.1 11 0.0005 14.5 5.7 52 13-66 31-85 (87) 51 3kzw_A Cytosol aminopeptidase; 37.8 13 0.00059 14.1 4.8 31 131-162 307-337 (515) 52 3cr3_A PTS-dependent dihydroxy 28.9 19 0.00082 13.2 4.5 37 1-38 1-37 (192) 53 1gyt_A Cytosol aminopeptidase; 24.6 22 0.00099 12.7 6.2 16 455-470 484-499 (503) 54 2no8_A Colicin-E2 immunity pro 21.9 25 0.0011 12.4 5.4 50 15-66 32-84 (86) No 1 >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP dipeptidase 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Probab=100.00 E-value=0 Score=449.45 Aligned_cols=456 Identities=24% Similarity=0.288 Sum_probs=359.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-------- Q ss_conf 888999999999889999999999961789798866666665479999999999999835488417897538-------- Q T0607 2 FKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK-------- 73 (471) Q Consensus 2 ~~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~-------- 73 (471) ..-+++.+|| ++++|++|++|++||+|||+|++++. .+.+.++++++.++|+++ |+++++++.. T Consensus 6 ~~~~~i~~~i-~~~~d~~v~~L~~lv~ipSvs~~~~~----~~~~~~~~~~l~~~l~~~---Gf~~~~~~~~~~~~~~~~ 77 (479) T 2zog_A 6 SALKAVFQYI-DENQDRYVKKLAEWVAIQSVSAWPEK----RGEIRRMMEVAAADVQRL---GGSVELVDIGKQKLPDGS 77 (479) T ss_dssp HHHHHHHHHH-HHTHHHHHHHHHHHHHSCCBTTCGGG----HHHHHHHHHHHHHHHHHT---TCEEEEECCCEEECTTSC T ss_pred HHHHHHHHHH-HHCHHHHHHHHHHHHCCCCCCCCCCC----CHHHHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCC T ss_conf 6899999999-97899999999999778985949765----579999999999999976---995999945774566666 Q ss_pred --CCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf --992489998737-99887999734032328877677888635433454213564222420358999998876314787 Q T0607 74 --NRTPLLFMEIPG-QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLP 150 (471) Q Consensus 74 --~~~~~v~~~~~g-~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~ 150 (471) .+++||++++++ +++|+|+|++|+||||+++.+.|+++||++.++||++||||+.|||++++++++|++++++.+.. T Consensus 78 ~~~~~~~l~~~~~~~~~~~~ill~gH~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRGs~D~Kg~~aa~l~Al~~l~~~~~~ 157 (479) T 2zog_A 78 EIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQE 157 (479) T ss_dssp EEECCCEEEEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCC T ss_pred CCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 67887589999678999898999736440089886545679963376399798446334662089999999987642137 Q ss_pred C-CCEEEEEECCCCCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCC Q ss_conf 7-73689981564336446999999977-642896089976877768776558885102368888986447763445677 Q T0607 151 Y-PRCILIIEACEESGSYDLPFYIELLK-ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSAS 228 (471) Q Consensus 151 ~-~~~~~~~~~~EE~G~~g~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~ 228 (471) + .+++++++.+||.|+.++..++.... ......++++..+++......+.+.+|+||..+++++++|...+.|+...+ T Consensus 158 ~~~~i~l~~~~dEE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~l~v~g~~~~~~~~~~g 237 (479) T 2zog_A 158 IPVNLRFCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYG 237 (479) T ss_dssp CSSEEEEEEESCGGGTCTTHHHHHHHTTTTTTTTCCEEEECCCBCSSSSSCEEEEEECEEEEEEEEEECCSSCEEHHHHT T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC T ss_conf 89508998424203134557999999888631455401111454456888641003763026788632667653466678 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHH Q ss_conf 414789999999999974002450213310144430008999999863345556542111001232001-0123333221 Q T0607 229 GIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQD-KQQLILNRTW 307 (471) Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 307 (471) +...+++..+.+....+.+.. ......+++................... ....+............ .......... T Consensus 238 ~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (479) T 2zog_A 238 GSVHEAMTDLISLMGCLVDKK-GKILIPGINDAVAPVTDEEHALYDHIDF--DMEEFAKDVGAETLLHSCKKDILMHRWR 314 (479) T ss_dssp TTSCCHHHHHHHHHTTSBCTT-SCBCSTTTTTTSCCCCHHHHHHTSSCCC--CHHHHHHHHTCSSCSCSSHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCHHCCCHHHHHHHHHHHCCC--CHHHHHHHCCCCCCCCCCCCCHHHHHCC T ss_conf 634468999999876303757-8604532000001036999987764145--6888755327642136666323554114 Q ss_pred HEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCCCCCCCC Q ss_conf 001201302100057851303547489999751278788899999999999973236---63389998315767766899 Q T0607 308 RPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY---NAKVDFKIQNGGSKGWNAPL 384 (471) Q Consensus 308 ~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 384 (471) .++.++.++.++..++++.||||++|++.+|+|++++.+.+++.+.+++.+.+.... .....+++.. ..+|+..+. T Consensus 315 ~~~~~~~~i~~~~~~~~~~nvip~~~~~~~d~R~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~v~~~~-~~~p~~~~~ 393 (479) T 2zog_A 315 YPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGH-GGKPWVSDF 393 (479) T ss_dssp SCEEEEEEEESSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEE-EECCEECCT T ss_pred CCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCEECCC T ss_conf 5542224331454587743124420688522324889999999999999999751111688617999767-887131699 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 88899999999999836976523442776556899998618998999687786667567776004899999999999999 Q T0607 385 LSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVL 464 (471) Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l 464 (471) +++++ +.+.+++++++|.++.....|||.+.++.|.+. .++|++.+|+|..++++|++|||++++++.+++++|+.+| T Consensus 394 ~~~~v-~~l~~a~~~~~G~~p~~~~~GGs~p~~~~f~~~-~g~~~v~~g~g~~~~~aH~~nE~i~i~~l~~~~~i~~~~l 471 (479) T 2zog_A 394 NHPHY-QAGRRALKTVFGVEPDLTREGGSIPVTLTFQEA-TGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYL 471 (479) T ss_dssp TSHHH-HHHHHHHHHHHSSCCEEEEESSCCTHHHHHHHH-HCSEEEECCCBCTTCCTTSTTCEEEHHHHHHHHHHHHHHH T ss_pred CCHHH-HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH T ss_conf 99999-999999999879996476778773679999987-4949999778887679688556178999999999999999 Q ss_pred HHHHHCC Q ss_conf 9997139 Q T0607 465 YSFSQKK 471 (471) Q Consensus 465 ~~la~~~ 471 (471) .+|++.| T Consensus 472 ~~l~~l~ 478 (479) T 2zog_A 472 YEVSQLK 478 (479) T ss_dssp HHHHHCC T ss_pred HHHHHHH T ss_conf 9998623 No 2 >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural genomics, PSI-2; HET: BGC; 1.90A {Streptococcus pneumoniae TIGR4} Probab=100.00 E-value=0 Score=438.69 Aligned_cols=444 Identities=18% Similarity=0.243 Sum_probs=355.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEC Q ss_conf 99999999988999999999996178979886666666547999999999999983548841789753899248999873 Q T0607 5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIP 84 (471) Q Consensus 5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~ 84 (471) +++.+|..|+.++++|++|++||+|||+|++.. .++++++||++||+++ |+++++.+. ++++||+++++ T Consensus 32 ~~~~~~~~~~~~~~~l~~L~~lv~i~Svs~~~~-------g~~~~a~~l~~~l~~~---G~~~~i~e~-~~~~nvia~~~ 100 (481) T 2pok_A 32 EQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQV-------GLKEVANYLGEIFKRV---GAEVEIDES-YTAPFVMAHFK 100 (481) T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSCCCGGGCT-------THHHHHHHHHHHHHHT---TCEEEEECS-SSSCEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHHHHHHHHC---CCEEEEEEC-CCCCEEEEEEC T ss_conf 999986655779999999999967999796703-------5999999999999977---997999966-99988999967 Q ss_pred CC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECC Q ss_conf 79--98879997340323288776778886354334542135642224203589999988763147877-7368998156 Q T0607 85 GQ--IDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEAC 161 (471) Q Consensus 85 g~--~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~ 161 (471) ++ ++|+|+|++|+||||+++.+.|+++||+++++||++||||++|||++++++++|++.+++.+..+ .+++++++.+ T Consensus 101 g~~~~~~~lll~gH~DvVp~~~~~~W~~~PF~~~i~dg~lyGRGt~D~Kg~~aa~l~A~~~l~~~~~~~~~~i~~~~~~d 180 (481) T 2pok_A 101 SSRPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGA 180 (481) T ss_dssp CSSTTCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESC T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC T ss_conf 88999998999867278289997556579943799899999664665246699999999999864157897358852025 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 43364469999999776428960899768777687765588851023688889864477634456774147899999999 Q T0607 162 EESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQL 241 (471) Q Consensus 162 EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~ 241 (471) ||.|+.++..+++...+.+...++++..+++......+.+.++.+|..++.+++.+...+.|+.. ++.+.|++..+..+ T Consensus 181 EE~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 259 (481) T 2pok_A 181 EESASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEISGGNKGIVTFDAKVKSADVDIHSSY-GGVVESAPWYLLQA 259 (481) T ss_dssp GGGTTTTHHHHHHHHHHHHTTCSEEECSCCBBCTTSCEEEECCBCEEEEEEEEEECSSSCEEGGG-TTTBCCHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCEECCCCCC-CCCCCCHHHHHHHH T ss_conf 33112321233333331234663355404666655542133035553011223330122044556-76665428899999 Q ss_pred HHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHEEEECCEEEEEC Q ss_conf 999740024502133101444300089999998633455565421110012320-0101233332210012013021000 Q T0607 242 ISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVI-QDKQQLILNRTWRPALTVTGADGFP 320 (471) Q Consensus 242 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~v~~i~~~~ 320 (471) ...+.... ....+++++..+................................. ........+....+|.+++.|.++. T Consensus 260 ~~~l~~~~-~~~~i~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~I~gg~ 338 (481) T 2pok_A 260 LQSLRAAD-GRILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGY 338 (481) T ss_dssp HHHTBCTT-SCBCCTTTGGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTCCSCCSSCSHHHHHHHHHHSCEEEEEEEEEEC T ss_pred HHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCC T ss_conf 99754310-24344454655567017899999763105998874540553333334332313430367640367664221 Q ss_pred CCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 57851303547489999751278788899999999999973236633899983157677668998889999999999983 Q T0607 321 AIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY 400 (471) Q Consensus 321 ~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 400 (471) ..+++.||||++|++++|+|++|..+.+++.+.+++.+++....... ++... ..+|+.++.+++++. .+.+++++. T Consensus 339 ~~~~~~nviP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~~~~v~--i~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 414 (481) T 2pok_A 339 QGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVE--LYYTL-GEMSYRSDMSAPAIL-NVIELAKKF 414 (481) T ss_dssp CSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHTTCTTEE--EEEEE-EECCBCCCSCSHHHH-HHHHHHTTT T ss_pred CCCCCCEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE--EEEEC-CCCCCCCCCCCHHHH-HHHHHHHHH T ss_conf 22201334352489999998589999999999999999863899689--99934-787667899999999-999999998 Q ss_pred CCCCC-CEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 69765-23442776556899998618998999687786667567776004899999999999999999 Q T0607 401 YDKPA-AYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF 467 (471) Q Consensus 401 ~~~~~-~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l 467 (471) ++.++ ..++.|||.++..+|.. .++|++.+|||..++++|++|||++++++.+++++|.++|.+| T Consensus 415 ~g~~~~~~~~~gGt~~~~~~~~~--~gip~v~~Gpg~~~~~aH~~nE~V~i~~l~~~~~~~~~li~~y 480 (481) T 2pok_A 415 YPQGVSVLPTTAGTGPMHTVFDA--LEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRSY 480 (481) T ss_dssp CTTCEEEESCBSSCCTHHHHHHH--HCCCEEBCCSBCTTCCTTSTTCEEEHHHHHHHHHHHHHHHHTT T ss_pred HCCCCCEEECCCCCCHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHC T ss_conf 58997156105445278999987--5999999898871238378657289999999999999999953 No 3 >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structural genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Probab=100.00 E-value=0 Score=422.24 Aligned_cols=454 Identities=20% Similarity=0.252 Sum_probs=362.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC----------C Q ss_conf 999999999889999999999961789798866666665479999999999999835488417897538----------9 Q T0607 5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK----------N 74 (471) Q Consensus 5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~----------~ 74 (471) |++++|| |+++|+++++|++||+|||+|+++.+ +..+.+.++++++.+||+++ |+++++++.. . T Consensus 14 ~~~~~~i-d~~~~~~v~~L~~lv~ips~s~~~~~--~~~~~~~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~~~~~ 87 (485) T 3dlj_A 14 EKVFQYI-DLHQDEFVQTLKEWVAIESDSVQPVP--RFRQELFRMMAVAADTLQRL---GARVASVDMGPQQLPDGQSLP 87 (485) T ss_dssp HHHHHHH-HHTHHHHHHHHHHHHTSCCBSSSCCH--HHHHHHHHHHHHHHHHHHHT---TCEEEEECCCEEEC--CCEEE T ss_pred HHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCC T ss_conf 9999999-97799999999999478997999876--55678999999999999977---995999815764244566678 Q ss_pred CCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-C Q ss_conf 92489998737-998879997340323288776778886354334542135642224203589999988763147877-7 Q T0607 75 RTPLLFMEIPG-QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-P 152 (471) Q Consensus 75 ~~~~v~~~~~g-~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~ 152 (471) +++||++++++ +++|+|+|++|+||||+++.+.|+++||++.++++++||||+.|||+++++++++++.++..+..+ . T Consensus 88 ~~~~v~~~~~~~~~~~~v~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~l~GrG~~d~k~~~~~~~~~~~~~~~~~~~~~~ 167 (485) T 3dlj_A 88 IPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPV 167 (485) T ss_dssp CCCEEEEEECCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSS T ss_pred CCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 88779999789998898999861506378876566459950697287676477655651689999999998753147885 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHH Q ss_conf 3689981564336446999999977642-896089976877768776558885102368888986447763445677414 Q T0607 153 RCILIIEACEESGSYDLPFYIELLKERI-GKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIV 231 (471) Q Consensus 153 ~~~~~~~~~EE~G~~g~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~ 231 (471) +++++++.+||.|+.++..++..+...+ ...+.+...+.+......+.+.++.++..++++++.|.+.+.|++..+..+ T Consensus 168 ~~~~~~~~~EE~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 247 (485) T 3dlj_A 168 NIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAITYGTRGNSYFMVEVKCRDQDFHSGTFGGIL 247 (485) T ss_dssp EEEEEEESCGGGTTTTHHHHHHHHTTTTSTTCCEEEECCCBCCC--CCEEEEEECEEEEEEEEEESCSSCEETTTSTTSS T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCCH T ss_conf 38999984224464039999996035424676455422422347887448986412157899999548875463335127 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHEE Q ss_conf 7899999999999740024502133101444300089999998633455565421110012-320010123333221001 Q T0607 232 ADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAK-PVIQDKQQLILNRTWRPA 310 (471) Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t 310 (471) .+++..++..+..+.... ....+++....+..................... ....... ................++ T Consensus 248 ~~a~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (485) T 3dlj_A 248 HEPMADLVALLGSLVDSS-GHILVPGIYDEVVPLTEEEINTYKAIHLDLEEY--RNSSRVEKFLFDTKEEILMHLWRYPS 324 (485) T ss_dssp CCHHHHHHHHHTTSBCTT-SCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHH--HHHHTCSCCSCSSHHHHHHHHHTSCE T ss_pred HHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHH--HHHHCCCHHHCCHHHHHHHHHCCCCC T ss_conf 789999999999863223-663365311221111077887765244578888--65423220102125667765315773 Q ss_pred EECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCCCCCCCCCCH Q ss_conf 201302100057851303547489999751278788899999999999973236---63389998315767766899888 Q T0607 311 LTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY---NAKVDFKIQNGGSKGWNAPLLSD 387 (471) Q Consensus 311 ~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 387 (471) .+++++.+...++++.|+||++|++++|+|+.+..+.+++.+.+++.+.+.... ...++++... .++|+.++.+++ T Consensus 325 ~~v~~i~~~~~~~~~~nvip~~~~~~~~~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~ 403 (485) T 3dlj_A 325 LSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTL-GLHPWIANIDDT 403 (485) T ss_dssp EEEEEEESSCCSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCSSEEEEEEEE-EECCEECCTTSH T ss_pred EEEEEEECCCCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCCCCCH T ss_conf 1354333144478643101788999998742786789999999999999998750677507999767-777655799889 Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999836976523442776556899998618998999687786667567776004899999999999999999 Q T0607 388 WLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF 467 (471) Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l 467 (471) + .+++.+++++++|.++.....+|+++++..|. ...++|++.+|+|..++++|++|||++++++.+++++|+.+|.+| T Consensus 404 l-v~~l~~a~~~~~g~~~~~~~~~g~~d~~~~~~-~~~~~~~~~~g~g~~~~~~H~~~E~i~~~~~~~~~~i~~~~i~~l 481 (485) T 3dlj_A 404 Q-YLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQ-EIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEM 481 (485) T ss_dssp H-HHHHHHHHHHHHSSCCEEEEESSCCHHHHHHH-HHTC--CEECCCBCTTCCTTSTTCEEEHHHHHHHHHHHHHHHHHH T ss_pred H-HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHH T ss_conf 9-99999999998789976884102725789999-866999999788888889889985788999999999999999999 Q ss_pred HHC Q ss_conf 713 Q T0607 468 SQK 470 (471) Q Consensus 468 a~~ 470 (471) +|. T Consensus 482 a~~ 484 (485) T 3dlj_A 482 AQL 484 (485) T ss_dssp HTC T ss_pred HCC T ss_conf 660 No 4 >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Probab=100.00 E-value=0 Score=376.70 Aligned_cols=381 Identities=17% Similarity=0.182 Sum_probs=299.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCEEEEEE Q ss_conf 9999999998899999999999617897988666666654799999999999998354884178975389--92489998 Q T0607 5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKN--RTPLLFME 82 (471) Q Consensus 5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~--~~~~v~~~ 82 (471) ..++++++ ++++++|++|++||+|||+|++++ ...++++|+++||+++ |++++..+..+ ..+||+++ T Consensus 8 ~~l~~~~~-~~~~~~~~~l~~lv~i~S~s~~~~-------~~~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~nl~~~ 76 (393) T 1cg2_A 8 NVLFQAAT-DEQPAVIKTLEKLVNIETGTGDAE-------GIAAAGNFLEAELKNL---GFTVTRSKSAGLVVGDNIVGK 76 (393) T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHTSCCBTTCHH-------HHHHHHHHHHHHHHHT---TCEEEEEECSTTCCSEEEEEE T ss_pred HHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCHH-------HHHHHHHHHHHHHHHC---CCEEEEECCCCCCCCCEEEEE T ss_conf 89999999-749999999999968999897989-------9999999999999978---997999846886567779999 Q ss_pred ECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECC Q ss_conf 73799887999734032328877677888635433454213564222420358999998876314787-77368998156 Q T0607 83 IPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLP-YPRCILIIEAC 161 (471) Q Consensus 83 ~~g~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~~ 161 (471) ++|+++|+|+|++||||||+++ .|+.+||+ ++++++||||+.|||+++++++.+++.+++.+.. .+++.++++++ T Consensus 77 ~~g~~~~~i~l~~H~DtVp~~~--~w~~~P~~--~~~~~~~g~G~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~ 152 (393) T 1cg2_A 77 IKGRGGKNLLLMSHMDTVYLKG--ILAKAPFR--VEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTD 152 (393) T ss_dssp EECSSCCCEEEEEECCBSCCTT--HHHHSCCE--EETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESC T ss_pred ECCCCCCEEEEEEECCCCCCCC--CCCCCCEE--EECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC T ss_conf 8899999699992356179998--67889868--8799235466666848899999999999973036772799965615 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 43364469999999776428960899768777687765588851023688889864477634456774147899999999 Q T0607 162 EESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQL 241 (471) Q Consensus 162 EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~ 241 (471) ||.++.|...++...... .++++..+.. ......++++++|..+++++++|. .+||+..+..+.|++..++++ T Consensus 153 EE~~~~g~~~~~~~~~~~---~~~~~~~e~~--~~~~~~i~~g~~G~~~~~i~v~G~--~~Hag~~p~~g~nAi~~a~~~ 225 (393) T 1cg2_A 153 EEKGSFGSRDLIQEEAKL---ADYVLSFEPT--SAGDEKLSLGTSGIAYVQVNITGK--ASHAGAAPELGVNALVEASDL 225 (393) T ss_dssp GGGTTTTTHHHHHHHHHH---CSEEEECCCE--ETTSCEEESEECEEEEEEEEEECB--CEETTSCGGGSBCHHHHHHHH T ss_pred CCCCCCCCCCHHHHCCCC---CCCCCCCCCC--CCCCCCEEEECEEEEEEEEEEEEC--CCCCCCCCCCCHHHHHHHHHH T ss_conf 433566763112202434---4433223577--577653445120689999999952--666666875323689999999 Q ss_pred HHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECC Q ss_conf 99974002450213310144430008999999863345556542111001232001012333322100120130210005 Q T0607 242 ISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPA 321 (471) Q Consensus 242 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~ 321 (471) +..+..... .....+++++.|. T Consensus 226 i~~l~~~~~------------------------------------------------------~~~~~~~~v~~i~---- 247 (393) T 1cg2_A 226 VLRTMNIDD------------------------------------------------------KAKNLRFNWTIAK---- 247 (393) T ss_dssp HHHHGGGCB------------------------------------------------------TTTTEEEEEEEEE---- T ss_pred HHHHHHHHC------------------------------------------------------CCCCCCCCCCCCC---- T ss_conf 999874322------------------------------------------------------1123101244333---- Q ss_pred CCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 78513035474899997512787888999999999999732366338999831576776689988899999999999836 Q T0607 322 IADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYY 401 (471) Q Consensus 322 ~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 401 (471) ++.+.|+||++|++++|+|+++.++.+++.+.|++.+++......++++++.. .+||+...+.+..+.+.+.+++++.+ T Consensus 248 gG~~~nvIP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~-~~p~~~~~~~~~~l~~~~~~~~~~~~ 326 (393) T 1cg2_A 248 AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTR-GRPAFNAGEGGKKLVDKAVAYYKEAG 326 (393) T ss_dssp ECSSTTEECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEEEEEEE-CSCCEECHHHHHHHHHHHHHHHHHTT T ss_pred CCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 66410477546899899963980229999999999997521689749999962-67765578876899999999999861 Q ss_pred CCCCCEEECCCCHHHHHHHHHHHCCCCEE-EECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 97652344277655689999861899899-968778666756-77760048999999999999999997139 Q T0607 402 DKPAAYMGEGGTIPFMSMLGEQFPKAQFM-ITGVLGPHSNAH-GPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 402 ~~~~~~~~~gGt~~~~~~~~~~~~~~p~~-~~G~g~~~~~~H-~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) +........+|+ +|+++|... |+|++ .|||+. .+.| .+|||++++++.+++++|+.+|.+|++.| T Consensus 327 ~~~~~~~~~~g~-tDa~~~~~~--giP~i~~~Gp~~--~~~hh~~dE~v~i~~l~~~~~~~~~~i~~l~~g~ 393 (393) T 1cg2_A 327 GTLGVEERTGGG-TDAAYAALS--GKPVIESLGLPG--FGYHSDKAEYVDISAIPRRLYMAARLIMDLGAGK 393 (393) T ss_dssp CCCEEESCBSCC-CTHHHHGGG--SCCEECCCSCEE--ECTTSSSCCEEEGGGHHHHHHHHHHHHHHHHCC- T ss_pred CCCCCCCCCCEE-CHHHHHHHC--CCCEEEEECCCC--CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC T ss_conf 988855677517-589999871--999899807887--3447999661789999999999999999985889 No 5 >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis MC58} SCOP: c.56.5.4 d.58.19.1 Probab=100.00 E-value=0 Score=352.90 Aligned_cols=374 Identities=19% Similarity=0.188 Sum_probs=291.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC Q ss_conf 99999999999617897988666666654799999999999998354884178975389924899987379988799973 Q T0607 16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG 95 (471) Q Consensus 16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~ 95 (471) ++++|++|++||+|||+|+++ ..++++|++||+++ |++++.+. .++.+||++++ |+.+|+|+|++ T Consensus 5 ~~~~lel~~~Lv~ips~S~~e----------~~~~~~l~~~l~~~---G~~~~~~~-~~~~~nv~a~~-g~~~p~vll~~ 69 (393) T 1vgy_A 5 ETQSLELAKELISRPSVTPDD----------RDCQKLMAERLHKI---GFAAEEMH-FGNTKNIWLRR-GTKAPVVCFAG 69 (393) T ss_dssp CSHHHHHHHHHHTSCCBTTCC----------TTHHHHHHHHHHTT---TCEEEECC-BTTBCEEEEEE-CSSSSEEEEEE T ss_pred CHHHHHHHHHHHCCCCCCCCH----------HHHHHHHHHHHHHC---CCEEEEEE-ECCCCEEEEEE-CCCCCEEEEEC T ss_conf 389999999983899979888----------99999999999978---99589997-09932899994-89998799988 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCC-HHHHHHH Q ss_conf 40323288776778886354334542135642224203589999988763147877-736899815643364-4699999 Q T0607 96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESGS-YDLPFYI 173 (471) Q Consensus 96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G~-~g~~~~~ 173 (471) ||||||+++.+.|+++||.+.++++++||||+.|+|+++++++.+++.++..+..+ .++.++|+++||.++ .|+..+. T Consensus 70 H~Dtvp~~~~~~~~~~p~~~~~~~g~~~grG~~d~k~~va~~l~a~~~~~~~~~~~~~~i~~~~~~~eE~~~~~G~~~~~ 149 (393) T 1vgy_A 70 HTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVV 149 (393) T ss_dssp ECCBCCCCCGGGSSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHH T ss_conf 75648899864542244366898063243132443034466789999752125564665567567431215545738888 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 99776428960899768777687765588851023688889864477634456774147899999999999740024502 Q T0607 174 ELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI 253 (471) Q Consensus 174 ~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471) ..........|+++..+.+......+.+++|+||.++++++++|. .+|++.. ....+++..+++++..+........ T Consensus 150 ~~~~~~~~~~D~~i~~e~~~~~~~~~~i~~g~~G~~~~~i~v~G~--~~Hs~~p-~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (393) T 1vgy_A 150 DVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGK--QGHIAYP-HLAINPVHTFAPALLELTQEVWDEG 226 (393) T ss_dssp HHHHHTTCCEEEEEECCCCBSSSTTSEEECEECEEEEEEEEEECB--CEETTCG-GGCBCHHHHHHHHHHHHHHCCCCCC T ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEEE--CCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 888855888898998887555778864888636999999999940--7533687-5342147889999999853321024 Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE Q ss_conf 13310144430008999999863345556542111001232001012333322100120130210005785130354748 Q T0607 254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT 333 (471) Q Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~ 333 (471) . ......+++++.+.++ .++.|+||++| T Consensus 227 ~-------------------------------------------------~~~~~~~~~v~~i~~g---~~a~nvIP~~~ 254 (393) T 1vgy_A 227 N-------------------------------------------------EYFPPTSFQISNINGG---TGATNVIPGEL 254 (393) T ss_dssp C-------------------------------------------------SSCCCCEEEEEEEEEC---CSCTTEECSEE T ss_pred C-------------------------------------------------CCCCCCEEEEEEEECC---CCCCCCCCCEE T ss_conf 7-------------------------------------------------5579834899899869---99766728889 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 99997512787888999999999999732366338999831576776689988899999999999836976523442776 Q T0607 334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT 413 (471) Q Consensus 334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt 413 (471) ++++|+|..+.++.+++.+.+++.+.+... ..++++.... +|+. ...++ +..++++++++..+.++.....+|+ T Consensus 255 ~~~~~~R~~~~~~~~~i~~~~~~~~~~~~~---~~~i~~~~~~-~~~~-~~~~~-~~~~~~~a~~~~~g~~~~~~~~~g~ 328 (393) T 1vgy_A 255 NVKFNFRFSTESTEAGLKQRVHAILDKHGV---QYDLQWSCSG-QPFL-TQAGK-LTDVARAAIAETCGIEAELSTTGGT 328 (393) T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEEEEE-CCEE-CCSSH-HHHHHHHHHHHHHSSCCEEECCSCC T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCC---CEEEEEEECC-CCCC-CCCCH-HHHHHHHHHHHHHCCCCEEEECCEE T ss_conf 999973146756699999999999986089---4599993157-8620-23426-9999999999987899768730127 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 556899998618998999687786667567776004899999999999999999713 Q T0607 414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~ 470 (471) +|++++.+. ++|++.|||+. .++|++||+++++++.+++++|.++|.+|... T Consensus 329 -~D~~~~~~~--g~p~v~~Gp~~--~~~H~~~E~v~i~~l~~~~~il~~~l~~ll~g 380 (393) T 1vgy_A 329 -SDGRFIKAM--AQELIELGPSN--ATIHQINENVRLNDIPKLSAVYEGILVRLLAG 380 (393) T ss_dssp -CTHHHHGGG--EEEEEECCSBC--TTTTSTTCEEETTHHHHHHHHHHHHHHHHC-- T ss_pred -CHHHHHHHC--CCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCC T ss_conf -689999863--99889984799--87679986189999999999999999998588 No 6 >2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT} Probab=100.00 E-value=0 Score=352.36 Aligned_cols=420 Identities=14% Similarity=0.124 Sum_probs=284.4 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC----CCCEEEEE Q ss_conf 99999999617897988666666654799999999999998354884178975389924899987379----98879997 Q T0607 19 ILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ----IDDTVLLY 94 (471) Q Consensus 19 ~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~----~~~~i~l~ 94 (471) +++.|++||+|||+|++ ++++++||++||+++ |+++++ +..+||+++++|+ +.|+|+|+ T Consensus 13 ~~~~~~~l~~iPs~s~~----------e~~~~~~l~~~l~~~---G~~v~~----d~~gnv~~~~~g~~~~~~~~~Ill~ 75 (487) T 2qyv_A 13 LWQWFDQICAIPHPSYK----------EEQLAQFIINWAKTK---GFFAER----DEVGNVLIRKPATVGMENRKPVVLQ 75 (487) T ss_dssp HHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHHHT---TCEEEE----CTTCCEEEEECCCTTCTTBCCEEEE T ss_pred HHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----ECCCEEEEEECCCCCCCCCCEEEEE T ss_conf 99999999379999958----------999999999999978---998999----4688699998777888999979998 Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH Q ss_conf 34032328877---677888635433454213564222420358999998876314787773689981564336446999 Q T0607 95 GHLDKQPEMSG---WSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPF 171 (471) Q Consensus 95 ~H~DvVp~~~~---~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~ 171 (471) +|+||||+++. ++|++|||++.++|+++||||+.|||+++++++++++.+++.+.++++++++++++||.|+.|+.. T Consensus 76 ~H~DvVP~~~~~~~~~W~~dPf~~~~~d~~lyGRG~~D~K~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~EE~g~~G~~~ 155 (487) T 2qyv_A 76 AHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGTTLGADNGIGMASALAVLESNDIAHPELEVLLTMTEERGMEGAIG 155 (487) T ss_dssp EESCBCCC----------CCCCCEEECSSEEEETTBCCCHHHHHHHHHHHHHHHCSSSCCSSEEEEEESCTTTTCHHHHT T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHH T ss_conf 61153789998774546679815798688998886456786889999999755531478998899999942578766888 Q ss_pred HHHHHHHHCCCCEEEEECCCCCC-------------CCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCH-HHHHHHH Q ss_conf 99997764289608997687776-------------877655888510236888898644776344567741-4789999 Q T0607 172 YIELLKERIGKPSLVICLDSGAG-------------NYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGI-VADSFRV 237 (471) Q Consensus 172 ~~~~~~~~~~~~d~~~~~~~~~~-------------~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~-~~~~~~~ 237 (471) +.. .+...++.+..+.... ....+.++.+.+|..+++++++|... .||+..++. ..|++.. T Consensus 156 ~~~----~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~-~hs~~~~~~~~~nai~~ 230 (487) T 2qyv_A 156 LRP----NWLRSEILINTDTEENGEIYIGCAGGENADLELPIEYQVNNFEHCYQVVLKGLRG-GHSGVDIHTGRANAIKV 230 (487) T ss_dssp CCS----SCCCCSEEEECCCCCTTEEEEEECEEEEEEEEEECCEEECCCSEEEEEEEECCCC-CBTTTTTTSCCCCHHHH T ss_pred HHH----HHCCCCEEEEECCCCCCCEEEECCCCCCCCEECCEEEECCCCCEEEEEEEECCCC-CCCCCCCCCCHHHHHHH T ss_conf 875----3024342688635667731463146644301100012103550699999816887-64576633246889999 Q ss_pred HHHHHHHHHHCCCCEEECCCC-----CCC--------CC------CCCHHHHHHHHHHHHHHHHHHHHHHHH-------- Q ss_conf 999999974002450213310-----144--------43------000899999986334555654211100-------- Q T0607 238 ARQLISRIEDENTGEIKLPQL-----YCD--------IP------DERIKQAKQCAEILGEQVYSEFPWIDS-------- 290 (471) Q Consensus 238 ~~~~~~~l~~~~~~~~~~~g~-----~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 290 (471) +.+++..+...........+. ..+ .. .............+............. T Consensus 231 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (487) T 2qyv_A 231 LLRFLAELQQNQPHFDFTLANIRGGSIRNAIPRESVATLVFNGDITVLQSAVQKFADVIKAELALTEPNLIFTLEKVEKP 310 (487) T ss_dssp HHHHHHHHHHHCTTCCEEEEEEEEESCTTBCCCCEEEEEEECSCHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEECCCC T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 99999852201465222000020365322257625999970565788999999999999887612477742788861465 Q ss_pred HHHHHCCCHHHHHHHHHHEEEECCEEEEECCCC-------CCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 123200101233332210012013021000578-------5130354748999975127878889999999999997323 Q T0607 291 AKPVIQDKQQLILNRTWRPALTVTGADGFPAIA-------DAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPP 363 (471) Q Consensus 291 ~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~-------~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~ 363 (471) ......................+........+. +..+.+++.+++.+++|+++....+.+.+.++..++.. T Consensus 311 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~-- 388 (487) T 2qyv_A 311 QQVFSSQCTKNIIHCLNVLPNGVVRNSDVIENVVETSLSIGVLKTEDNFVRSTMLVRSLIESGKSYVASLLKSLASLA-- 388 (487) T ss_dssp SEEECHHHHHHHHHHHHHSCCEEEEECSSSTTCEEEEEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHH-- T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-- T ss_conf 555674666678876322777642001454652587533324742688349999862587425999999999998873-- Q ss_pred CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 66338999831576776689988899999999999836976523442776556899998618998999687786667567 Q T0607 364 YNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHG 443 (471) Q Consensus 364 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~ 443 (471) +.++++.. .++||..+.++++ .+.+.+++++++|.++.....+|+ .|++.|.+.++++|++.|||+. .++|+ T Consensus 389 -~~~v~~~~---~~~~~~~~~~~~l-v~~l~~a~~~~~G~~~~~~~~~gg-td~~~~~~~~~~~~~i~fGp~~--~~~H~ 460 (487) T 2qyv_A 389 -QGNINLSG---DYPGWEPQSHSDI-LDLTKTIYAQVLGTDPEIKVIHAG-LECGLLKKIYPTIDMVSIGPTI--RNAHS 460 (487) T ss_dssp -TCEEEEEE---EECCBCCCSCCHH-HHHHHHHHHHHHSSCCEEEEESSC-CTHHHHHHHCTTSEEEECCCCE--ESTTS T ss_pred -CEEEEEEC---CCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEEEEE-CHHHHHHHHCCCCCEEEECCCC--CCCCC T ss_conf -93999933---6777588999999-999999999987879869998841-4499998657999899989899--99978 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 776004899999999999999999713 Q T0607 444 PNEFLHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 444 ~~E~~~i~~l~~~~~il~~~l~~la~~ 470 (471) +|||++++++.+++++|.++|.+|+.| T Consensus 461 ~nE~v~i~~~~~~~~~~~~~L~~l~~~ 487 (487) T 2qyv_A 461 PDEKVHIPAVETYWKVLTGILAHIPSR 487 (487) T ss_dssp TTCEEEHHHHHHHHHHHHHHHHHCCBC T ss_pred CCCEEEHHHHHHHHHHHHHHHHHHCCC T ss_conf 784898999999999999999865329 No 7 >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Probab=100.00 E-value=0 Score=342.19 Aligned_cols=422 Identities=16% Similarity=0.159 Sum_probs=281.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEE-C Q ss_conf 99999988999999999996178979886666--66654799999999999998354884178975389924899987-3 Q T0607 8 YDYICQQWQEEILPSLCDYIKIPNKSPHFDAK--WEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEI-P 84 (471) Q Consensus 8 ~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~-~ 84 (471) .+++ +.++|+++++|++||+|||+|+++... .+......++++++.++++.. |++++.+. |+++++ . T Consensus 6 ~~~~-e~~~~~~l~~l~~lv~ips~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~------~~~~~~~~ 75 (470) T 1lfw_A 6 KELA-EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRD---GFDTENFA------NYAGRVNF 75 (470) T ss_dssp HHHH-HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHT---TCEEEEET------TTEEEEEE T ss_pred HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEC------CEEEEEEC T ss_conf 9999-99999999999999579998988444322335678999999999999975---98206878------37999972 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCC Q ss_conf 799887999734032328877677888635433-454213564222420358999998876314787-773689981564 Q T0607 85 GQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVL-KNGLLYGRGGADDGYSAYASLTAIRALEQQGLP-YPRCILIIEACE 162 (471) Q Consensus 85 g~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~-~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~~E 162 (471) ++++|+|+|++||||||+++ .|+++||.+.+ +++++||||+.|||+++++++.|++.+++.+.. +.++.++|+++| T Consensus 76 ~~~~~~i~l~~H~DvVp~~~--~W~~~Pf~~~~~~~g~l~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~dE 153 (470) T 1lfw_A 76 GAGDKRLGIIGHMDVVPAGE--GWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNE 153 (470) T ss_dssp CCCSSEEEEEEECCBCCCCS--CCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCT T ss_pred CCCCCEEEEEEEECCCCCCC--CCCCCCCCEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 89999799998876269999--8656996103854881654874478885178899999998734688886245445030 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCC--------------- Q ss_conf 33644699999997764289608997687776877655888510236888898644776344567--------------- Q T0607 163 ESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSA--------------- 227 (471) Q Consensus 163 E~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~--------------- 227 (471) |.|+.|++++++. ....++++.+++. ..+++|+||.++++++++|... |++.. T Consensus 154 E~g~~Ga~~l~~~----~~~~~~~i~~d~~------~~i~~g~kG~~~~~i~v~g~~~--h~~~~~~~~~~~~~~~~i~~ 221 (470) T 1lfw_A 154 ETNWVGIDYYLKH----EPTPDIVFSPDAE------YPIINGEQGIFTLEFSFKNDDT--KGDYVLDKFKAGIATNVTPQ 221 (470) T ss_dssp TTTCHHHHHHHHH----SCCCSEEEESSEE------SSEEEEECEEEEEEEEECCCCC--CCSBEEEEEEECSBTTBCCS T ss_pred CCCCHHHHHHHHH----CCCCCEEEECCCC------CCCCCCCCCEEEEEEEEECCCC--CCCCCCCCCCCCCCCCCHHH T ss_conf 1377669999972----8998599988998------7540012665999999741476--65542234223322442111 Q ss_pred ------CCHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHH Q ss_conf ------7414789999999999974002----------4502133101444300089999998633455565421--110 Q T0607 228 ------SGIVADSFRVARQLISRIEDEN----------TGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFP--WID 289 (471) Q Consensus 228 ------~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 289 (471) .......+.............. ...+.....|...++...+++......+......... ... T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~h~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 301 (470) T 1lfw_A 222 VTRATISGPDLEAVKLAYESFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLH 301 (470) T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHTCEEEEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHH T ss_pred HHEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 12344136645889999987654227763388506753389812000100863344879999999998532200122455 Q ss_pred HHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 01232001012333322100120130210005785130354748999975127878889999999999997323663389 Q T0607 290 SAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVD 369 (471) Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 369 (471) ................. ..+....+ ......+...|++|+++++.+|+|+.+..+.+++.+.+.+.+.. ... T Consensus 302 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~------~~~ 373 (470) T 1lfw_A 302 FLAEVEHEDFYGKKLGI-FHHDDLMG-DLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG------ILD 373 (470) T ss_dssp HHHHTTTTCTTSTTTTC-CCEETTTE-ECEEEEEEEEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT------TEE T ss_pred HHHHHCCCCCCCCCCCC-CCCCCCCC-CEEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCC------CEE T ss_conf 56653377766642344-44445434-30353362003568769999977518989999999999998577------617 Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCC Q ss_conf 9983157677668998889999999999983697652344277655689999861899899968778--66675677760 Q T0607 370 FKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLG--PHSNAHGPNEF 447 (471) Q Consensus 370 v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~--~~~~~H~~~E~ 447 (471) ++.. ..++|+.++.++|++ +.+.+++++++|.++.....+|+ +|++.| +. ++.+||+. ...++|+|||| T Consensus 374 i~~~-~~~~p~~~~~~~p~v-~~l~~a~~~~~g~~~~~~~~~gg-tda~~~----~~--~v~~G~~~~g~~~~~H~~nE~ 444 (470) T 1lfw_A 374 VTYN-GFEEPHYVPGSDPMV-QTLLKVYEKQTGKPGHEVVIGGG-TYGRLF----ER--GVAFGAQPENGPMVMHAANEF 444 (470) T ss_dssp EECS-CCBCCEECCTTCHHH-HHHHHHHHHHHCCCCCEEEESSC-CGGGGS----TT--CEECCEECTTCCCCTTSTTCE T ss_pred EEEE-ECCCCCCCCCCCHHH-HHHHHHHHHHHCCCCEEEEEECH-HHHHHH----CC--EEEECCCCCCCCCCCCCCCCC T ss_conf 9997-435775469988999-99999999987899759987121-288762----24--289566369987674764453 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 04899999999999999999713 Q T0607 448 LHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 448 ~~i~~l~~~~~il~~~l~~la~~ 470 (471) ++++++.+++++|+.+|.+|++. T Consensus 445 v~i~~l~~~~~vy~~~i~~La~~ 467 (470) T 1lfw_A 445 MMLDDLILSIAIYAEAIYELTKD 467 (470) T ss_dssp EEHHHHHHHHHHHHHHHHHHHSC T ss_pred EEHHHHHHHHHHHHHHHHHHHHC T ss_conf 88999999999999999998516 No 8 >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Probab=100.00 E-value=0 Score=351.56 Aligned_cols=362 Identities=14% Similarity=0.096 Sum_probs=263.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEE Q ss_conf 88999999999996178979886666666547999999999999983548841789753899248999873799887999 Q T0607 14 QWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLL 93 (471) Q Consensus 14 ~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l 93 (471) +..++.|++|++||+|||+|+..... .+..+++||+++| .|+++++++..++++|+++.. ++|+|+| T Consensus 6 ~~~~~~l~~L~~Lv~i~s~~~~~~~~-----~~~~~~~~l~~~l-----~g~~~~~~~~~~~~~~l~~~~---g~~~i~l 72 (369) T 2f7v_A 6 DLLASTLEHLETLVSFDTRNPPRAIA-----AEGGIFDYLRAQL-----PGFQVEVIDHGDGAVSLYAVR---GTPKYLF 72 (369) T ss_dssp HHHHHHHHHHHHHHHSCCBTTTTCCC-----SSSHHHHHHHTTC-----TTCEEEEEECSTTCEEEEEEE---SCCSEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCH-----HHHHHHHHHHHHC-----CCCEEEEEECCCCEEEEEEEC---CCCEEEE T ss_conf 67999999999981987869998547-----8999999999974-----898589995699769999983---9984999 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH-HHH Q ss_conf 7340323288776778886354334542135642224203589999988763147877736899815643364469-999 Q T0607 94 YGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDL-PFY 172 (471) Q Consensus 94 ~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~-~~~ 172 (471) ++|+||||++ ..|+++||+++++|+++||||+.|||+++++++++++. +.+++.++|+++||.|+.++ .++ T Consensus 73 ~~H~DtVp~~--~~w~~~Pf~~~~~~g~iyGrG~~D~Kg~~aa~l~a~~~------~~~~i~~~~~~dEE~g~~~~~~~~ 144 (369) T 2f7v_A 73 NVHLDTVPDS--PHWSADPHVMRRTEDRVIGLGVCDIKGAAAALVAAANA------GDGDAAFLFSSDEEANDPRCIAAF 144 (369) T ss_dssp EEECCBCCCC--SSCSSCTTSCEECSSEEECTTTTTTHHHHHHHHHHHTT------CCCCEEEEEESCTTSSSCCHHHHH T ss_pred ECCCCCCCCC--CCCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHH------CCCCEEEEEEEEEHCCCCCHHHHH T ss_conf 8477707899--98755898549989999977855626999999999985------699989999961000333101345 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 99977642896089976877768776558885102368888986447763445677414789999999999974002450 Q T0607 173 IELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGE 252 (471) Q Consensus 173 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (471) + ......|++++.+. +...+++++||.++++++++|.+ +||+..+..+.+++..+.+++..+.+... T Consensus 145 ~----~~~~~~d~~i~~e~-----~~~~i~~g~kG~~~~~i~~~G~~--~Hss~~~~~g~~a~~~a~~~~~~l~~~~~-- 211 (369) T 2f7v_A 145 L----ARGLPYDAVLVAEP-----TMSEAVLAHRGISSVLMRFAGRA--GHASGKQDPAASALHQAMRWGGKALDHVE-- 211 (369) T ss_dssp H----TTCCCCSEEEECCC-----STTCBBCCBCCEEEEEEEEECCC--C------CTTSCHHHHHHHHHHHHHHHHH-- T ss_pred H----HHCCCCCCEEEECC-----CCCEEEEECCCEEEEEEEEECCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHH-- T ss_conf 5----40366551354012-----34406774252589999991355--33557643444189999999998899998-- Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCE Q ss_conf 21331014443000899999986334555654211100123200101233332210012013021000578513035474 Q T0607 253 IKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPV 332 (471) Q Consensus 253 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~ 332 (471) ... .........++.+++.|.+ +.+.|+||++ T Consensus 212 --------------------------~~~------------------~~~~~~~~~~t~~v~~I~g----G~~~n~ip~~ 243 (369) T 2f7v_A 212 --------------------------SLA------------------HARFGGLTGLRFNIGRVDG----GIKANMIAPA 243 (369) T ss_dssp --------------------------HTT------------------TCEETTEESCEEEEEEEEE----CSSTTSCCSE T ss_pred --------------------------HHH------------------CCCCCCCCCCCCCCCEEEC----CCCCCCCCCC T ss_conf --------------------------764------------------1556753222103515711----3246250772 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC Q ss_conf 89999751278788899999999999973236633899983157677668998889999999999983697652344277 Q T0607 333 TSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGG 412 (471) Q Consensus 333 ~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gG 412 (471) |++.+|+|++|.++.+++.+.+++.+++. ...+++.......+.+..+ ..+....+++.+.+.. ..+......+| T Consensus 244 a~~~~diR~~p~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~g 318 (369) T 2f7v_A 244 AELRFGFRPLPSMDVDGLLATFAGFADPA---AAHFEETFRGPSLPSGDIA-RAEERRLAARDVADAL-DLPIGNAVDFW 318 (369) T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHTCSSC---CSEEEEEEEECCBSCSSHH-HHHHHHHHHHHHHHHT-TCCBCCCBSSC T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHH---CCEEEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHH-CCCCCCCCCEE T ss_conf 59999993698678999999999988674---1604898615787777665-4226799999999973-88876732203 Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6556899998618998999687786667567776004899999999999999999 Q T0607 413 TIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF 467 (471) Q Consensus 413 t~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l 467 (471) +|++.|... |+|++.||||.. +++|++|||+++++|.+++++|.++|..+ T Consensus 319 --tDa~~~~~~--Gip~v~~GPg~~-~~aH~~dE~v~i~~l~~~~~~~~~~i~~~ 368 (369) T 2f7v_A 319 --TEASLFSAG--GYTALVYGPGDI-AQAHTADEFVTLAQLQRYVESVNRIINGS 368 (369) T ss_dssp --CTHHHHHHT--TCCEEECCSSCG-GGTTCTTCEEEHHHHHHHHHHHHHHHHCC T ss_pred --CHHHHHHHC--CCCEEEECCCCC-CCCCCCCCEEEHHHHHHHHHHHHHHHHCC T ss_conf --559999857--999999899971-44878985089999999999999998316 No 9 >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A Probab=100.00 E-value=0 Score=328.27 Aligned_cols=373 Identities=18% Similarity=0.187 Sum_probs=288.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC Q ss_conf 99999999999617897988666666654799999999999998354884178975389924899987379988799973 Q T0607 16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG 95 (471) Q Consensus 16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~ 95 (471) ||++|++|++||+|||+|+++. .++++|.+||+++ |+++++++. ++.+|+++++ ++++|+|+|++ T Consensus 2 ~d~~i~l~~~lv~ipS~s~~e~----------~~~~~l~~~l~~l---G~~v~~~~~-~~~~~v~a~~-~~~~p~ill~~ 66 (377) T 3isz_A 2 KEKVVSLAQDLIRRPSISPNDE----------GCQQIIAERLEKL---GFQIEWMPF-NDTLNLWAKH-GTSEPVIAFAG 66 (377) T ss_dssp HHHHHHHHHHHHTSCCBTTCCT----------THHHHHHHHHHHT---TCEEEECCB-TTBCEEEEEE-ESSSCEEEEEE T ss_pred CHHHHHHHHHHHCCCCCCCCHH----------HHHHHHHHHHHHC---CCEEEEEEE-CCEEEEEEEC-CCCCCEEEEEC T ss_conf 3899999999947999798858----------9999999999977---994899981-9988999986-89998799979 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCH-HHHHHH Q ss_conf 40323288776778886354334542135642224203589999988763147877-7368998156433644-699999 Q T0607 96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESGSY-DLPFYI 173 (471) Q Consensus 96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G~~-g~~~~~ 173 (471) ||||||+++.+.|.++||...++++++||||+.|+|++.++++.+++.+.+.+... .++.+++..+||.++. |+.... T Consensus 67 H~Dtvp~~~~~~~~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~~~g~~~~~ 146 (377) T 3isz_A 67 HTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVV 146 (377) T ss_dssp ECCBCCCCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHH T ss_conf 88858988764343223331574375301024444332101467789877640477733775000011211047722445 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 99776428960899768777687765588851023688889864477634456774147899999999999740024502 Q T0607 174 ELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI 253 (471) Q Consensus 174 ~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471) ..+.......++++..+..........++.|++|..+++++++|.. +|++. +....+++..++.++..+........ T Consensus 147 ~~~~~~~~~~~~~i~~ept~~~~~~~~i~~g~~G~~~~~i~v~G~~--~H~~~-p~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (377) T 3isz_A 147 ETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQ--GHVAY-PHLAENPIHKAALFLQELTTYQWDKG 223 (377) T ss_dssp HHHHHTTCCCCEEEECCCCBSSSTTSEEEEEECEEEEEEEEEECC----------CGGGCHHHHHHHHHHHHHHCCCCCC T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEC--CCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 6665246773499994788865577447771379999999998604--64226-75465403556777777665431457 Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE Q ss_conf 13310144430008999999863345556542111001232001012333322100120130210005785130354748 Q T0607 254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT 333 (471) Q Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~ 333 (471) . ......+.+++.+.+ +..+.|++|+.+ T Consensus 224 ~-------------------------------------------------~~~~~~~~~~~~i~~---g~~~~n~~~~~~ 251 (377) T 3isz_A 224 N-------------------------------------------------EFFPPTSLQIANIHA---GTGSNNVIPAEL 251 (377) T ss_dssp C-------------------------------------------------SSSCCCEEEEEEEEE---CCSCSSCCCSEE T ss_pred C-------------------------------------------------CCEEEEEEEEEEEEC---CCCCCCCCCEEE T ss_conf 8-------------------------------------------------620145578867863---665566433235 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 99997512787888999999999999732366338999831576776689988899999999999836976523442776 Q T0607 334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT 413 (471) Q Consensus 334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt 413 (471) ++.+++|..+....+.+.+.+++.+++.. ..+++++... .+|+.. ..++.+..+.+ ++++..|.++.....+|+ T Consensus 252 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~g~~~~~~~~~g~ 325 (377) T 3isz_A 252 YIQFNLRYCTEVTDEIIKQKVAEMLEKHN---LKYRIEWNLS-GKPFLT-KPGKLLDSITS-AIEETIGITPKAETGGGT 325 (377) T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEEC-CCCEEC-CTTHHHHHHHH-HHHHHHSCCCEEEECSSC T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEEEC-CCCCCC-CCCHHHHHHHH-HHHHHHCCCCEEEEECCC T ss_conf 89840004862016899999999998619---8189999854-685337-98459999999-999987899738862435 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 55689999861899899968778666756777600489999999999999999971 Q T0607 414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ 469 (471) Q Consensus 414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~ 469 (471) +|++++.. .|+|++.|||+. .++|+||||++++++.+++++|.++|.+|++ T Consensus 326 -~Da~~~~~--~g~p~~~~Gpg~--~~~H~~~E~v~i~~l~~~~~vl~~~i~~l~~ 376 (377) T 3isz_A 326 -SDGRFIAL--MGAEVVEFGPLN--STIHKVNECVSVEDLGKCGEIYHKMLVNLLD 376 (377) T ss_dssp -CSHHHHHT--TTCEEEECCSBC--TTTTSTTCEEEHHHHHHHHHHHHHHHHHHTC T ss_pred -CHHHHHHH--HCCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHC T ss_conf -69999997--099999994699--9887998418999999999999999999876 No 10 >1fno_A Peptidase T; metallo peptidase, protease, zinc, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Probab=100.00 E-value=0 Score=339.97 Aligned_cols=370 Identities=14% Similarity=0.103 Sum_probs=277.7 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC---CCCEEEE Q ss_conf 9999999999617897988666666654799999999999998354884178975389924899987379---9887999 Q T0607 17 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ---IDDTVLL 93 (471) Q Consensus 17 ~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~---~~~~i~l 93 (471) |++|++|.+||+|||+|++.....+.++.+++++++|+++|+++| ++...+ +..+|++++++|+ +.|+|+| T Consensus 2 ~~~~~~~~~lv~I~s~s~~~~~~~p~~~~e~~~a~~l~~~l~~lG---~~~~~~---d~~gnv~a~~~g~~~~~~p~il~ 75 (417) T 1fno_A 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMG---LVNITL---SEKGTLMATLPANVEGDIPAIGF 75 (417) T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHT---CEEEEE---CTTCCEEEEECCSSCSCCCCEEE T ss_pred HHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---CEEEEE---CCCCEEEEEECCCCCCCCCEEEE T ss_conf 689999998763057169876789898789999999999999679---938998---89964999981457899988999 Q ss_pred ECCCCCCCCCCCCCC-------------------------CCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHH Q ss_conf 734032328877677-------------------------8886354334542135642----22420358999998876 Q T0607 94 YGHLDKQPEMSGWSD-------------------------DLHPWKPVLKNGLLYGRGG----ADDGYSAYASLTAIRAL 144 (471) Q Consensus 94 ~~H~DvVp~~~~~~w-------------------------~~~Pf~~~~~~~~~~GrG~----~D~k~~~~~~l~a~~~l 144 (471) ++|+||||++++|++ .++||...+.++.+||||. +|||+++++++.+++.+ T Consensus 76 ~~H~DtVp~g~~~~~~P~~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rg~~~~~ad~k~g~~~~l~a~~~l 155 (417) T 1fno_A 76 ISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVL 155 (417) T ss_dssp EEECCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHCCCCCCEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 89656289999877697354545686000354323102211664212124648983673024676478999999999999 Q ss_pred HHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCC Q ss_conf 31478777368998156433644699999997764289608997687776877655888510236888898644776344 Q T0607 145 EQQGLPYPRCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHS 224 (471) Q Consensus 145 ~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs 224 (471) ++.+.+.+++.++|+.+||.++ |+..+... .+ .+++.+..+.+ ....+.++.+|..+++++++|. .+|| T Consensus 156 ~~~~~~~~~i~~~~~~~EE~~~-G~~~~~~~---~~-~~d~a~~~~~~----~~~~i~~~~~g~~~~~i~~~G~--~~Ha 224 (417) T 1fno_A 156 KGNPIPHGDIKVAFTPDEEVGK-GAKHFDVE---AF-GAQWAYTVDGG----GVGELEFENFNAASVNIKIVGN--NVHP 224 (417) T ss_dssp HSSSCCCCCEEEEEESCGGGTC-TTTTCCHH---HH-CCSEEEECCCC----STTBEECCBCEEEEEEEEEECB--CCCG T ss_pred HHCCCCCCCEEEEEEEECCCCC-HHHHHHHH---CC-CCCEEEEEECC----CCCCCEEEECCCEEEEEEECCC--CCCC T ss_conf 8579988868999874011474-28888763---56-98689998515----8875134301305999995368--8777 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 56774147899999999999740024502133101444300089999998633455565421110012320010123333 Q T0607 225 GSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILN 304 (471) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (471) +..++.+.|++..+.+++..+...... T Consensus 225 g~~~~~~~nai~~a~~~i~~l~~~~~~----------------------------------------------------- 251 (417) T 1fno_A 225 GTAKGVMVNALSLAARIHAEVPADEAP----------------------------------------------------- 251 (417) T ss_dssp GGCTTTCBCHHHHHHHHHHTSCTTSSG----------------------------------------------------- T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCC----------------------------------------------------- T ss_conf 664235500799999999987641688----------------------------------------------------- Q ss_pred HHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCC-CC Q ss_conf 221001201302100057851303547489999751278788899999999999973236---63389998315767-76 Q T0607 305 RTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY---NAKVDFKIQNGGSK-GW 380 (471) Q Consensus 305 ~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~v~~~~~~~~-~~ 380 (471) ..+..+.++ ..++..|++|+++++.+++|..+.++.+++.+.+++.+++.... ...+.++......+ ++ T Consensus 252 ---~~t~~~~~~----~~g~~~n~ip~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 324 (417) T 1fno_A 252 ---ETTEGYEGF----YHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMRE 324 (417) T ss_dssp ---GGCCTTCCE----EEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHTTTCCTTCCEEEEEEEEECCCHH T ss_pred ---CCEEEECCC----CCCCCCCEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC T ss_conf ---732553465----4476411022239999999379866699999999999999999848974999999525777657 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 68998889999999999983697652344277655689999861899899968778666756777600489999999999 Q T0607 381 NAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCV 460 (471) Q Consensus 381 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il 460 (471) ..+.+++ +++++++++++++..+...++.|| +|+++|.. .|+|++.+|||. .++|++|||+++++|.+++++| T Consensus 325 ~~~~~~~-~v~~~~~a~~~~g~~~~~~~~~gg--tDa~~~~~--~Gip~v~~GpG~--~~~H~~nE~v~i~~l~~~~~i~ 397 (417) T 1fno_A 325 KVVEHPH-ILDIAQQAMRDCHITPEMKPIRGG--TDGAQLSF--MGLPCPNLFTGG--YNYHGKHEFVTLEGMEKAVQVI 397 (417) T ss_dssp HHHTSTH-HHHHHHHHHHHTTCCCBCCCBSSC--CHHHHHTT--TTCCCCEECCSE--ESTTSTTCEEEHHHHHHHHHHH T ss_pred CCCCCHH-HHHHHHHHHHHHCCCCEEEEEEEE--CHHHHHHH--CCCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHH T ss_conf 7888989-999999999983999389987748--78999986--799999988587--8885997188999999999999 Q ss_pred HHHHHHHHHC Q ss_conf 9999999713 Q T0607 461 SYVLYSFSQK 470 (471) Q Consensus 461 ~~~l~~la~~ 470 (471) .++++.+|+| T Consensus 398 ~~li~~~a~~ 407 (417) T 1fno_A 398 VRIAELTAKR 407 (417) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHHH T ss_conf 9999999976 No 11 >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Probab=100.00 E-value=0 Score=317.48 Aligned_cols=352 Identities=19% Similarity=0.241 Sum_probs=256.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEE Q ss_conf 88999999999996178979886666666547999999999999983548841789753899248999873799887999 Q T0607 14 QWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLL 93 (471) Q Consensus 14 ~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l 93 (471) +.++++|++|++||+|||+|++++ ...++++++++||+++ |++++.++. ++.+++++. +++++|+|+| T Consensus 3 ~~~~~~v~ll~~lv~ipS~s~~~~-------~~~~~a~~l~~~l~~~---G~~~~~~~~-~~~~~~~~~-~~~~~~~ill 70 (364) T 2rb7_A 3 SSMQHIVELTSDLIRFPSMHSRPE-------QISRCAGFIMDWCAQN---GIHAERMDH-DGIPSVMVL-PEKGRAGLLL 70 (364) T ss_dssp HHHHHHHHHHHHHHTSCCCTTCHH-------HHHHHHHHHHHHHHHT---TCCCEEEEE-TTEEEEEEC-SBTTEEEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCCCHH-------HHHHHHHHHHHHHHHC---CCEEEEEEC-CCEEEEEEE-ECCCCCEEEE T ss_conf 778999999999956999895827-------8999999999999977---995999806-995799998-3799982999 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHCCCC--CCCEEEEEECCCCCCCH Q ss_conf 734032328877677888635433454213564222420358999998----876314787--77368998156433644 Q T0607 94 YGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAI----RALEQQGLP--YPRCILIIEACEESGSY 167 (471) Q Consensus 94 ~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~----~~l~~~~~~--~~~~~~~~~~~EE~G~~ 167 (471) ++|+||||.+ .+||.+.++++++||||+.|+|+++++++.++ +.+++.+.. ...+.++++.+||.|+. T Consensus 71 ~~H~DtVp~~------~~p~~~~~~~~~i~grG~~D~kg~~a~~l~a~~~~l~~l~~~~~~~~~~~i~~~~~~~EE~g~~ 144 (364) T 2rb7_A 71 MAHIDVVDAE------DDLFVPRVENDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGM 144 (364) T ss_dssp EEECCCCCCC------GGGGSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTST T ss_pred ECCCCCCCCC------CCCCCCEEECCEEEECCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC T ss_conf 8524756799------8878648989879854656777525410245678888887527888995599998413104620 Q ss_pred -HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf -6999999977642896089976877768776558885102368888986447763445677414789999999999974 Q T0607 168 -DLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIE 246 (471) Q Consensus 168 -g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~ 246 (471) |...+. +. ...+.++..++.. ...++++++|.++++++++|.. +|++. +....|++..+.+++..+. T Consensus 145 ~g~~~~~----~~-~~~~~~~~~~~~~----~~~i~~~~~G~~~~~i~v~G~~--~H~~~-p~~g~nAi~~~~~~i~~l~ 212 (364) T 2rb7_A 145 NGAAKAL----PL-IRADYVVALDGGN----PQQVITKEKGIIDIKLTCTGKA--AHGAR-PWMGVNAVDLLMEDYTRLK 212 (364) T ss_dssp TTHHHHG----GG-CEEEEEEECSSSB----TTEEEEEECEEEEEEEEEECBC--EETTS-GGGSBCHHHHHHHHHHHHH T ss_pred CCHHHHH----HH-HCCCCEEECCCCC----CCEEEEECCCCEEEEEEEECCC--CCCCC-CCCCCCHHHHHHHHHHHHH T ss_conf 0268775----43-0132122204678----6217985031158999727577--63233-2368898898999999998 Q ss_pred HCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCC Q ss_conf 00245021331014443000899999986334555654211100123200101233332210012013021000578513 Q T0607 247 DENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAG 326 (471) Q Consensus 247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~ 326 (471) ...... ......++++++.+.+ +.+. T Consensus 213 ~~~~~~--------------------------------------------------~~~~~~~t~~i~~i~g----g~~~ 238 (364) T 2rb7_A 213 TLFAEE--------------------------------------------------NEDHWHRTVNLGRIRA----GEST 238 (364) T ss_dssp TTSCCC--------------------------------------------------CTTCCSCEEEEEEEEE----CSCT T ss_pred HHHCCC--------------------------------------------------CCCCCCEEEECCCCCC----CCCC T ss_conf 751213--------------------------------------------------6764320574132015----5345 Q ss_pred CEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 03547489999751278788899999999999973236633899983157677668998889999999999983697652 Q T0607 327 NVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAA 406 (471) Q Consensus 327 nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 406 (471) |+||++|++++|+|+.+.++.+++.+.+++.++. .+++... +++ ..+.++|++..+ .++.+... T Consensus 239 NvIP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~------~~~~~~~---~p~-~~~~~~~~~~~~-~~~~~~~~----- 302 (364) T 2rb7_A 239 NKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG------TVSIVRT---VPV-FLAADSPYTERL-LALSGATA----- 302 (364) T ss_dssp TEECSEEEEEEEEEECTTSCHHHHHHHHHHHCSS------EEEEEEE---ECC-EECCCCHHHHHH-HHHHCCEE----- T ss_pred CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCC------CEEEEEC---CCC-CCCCCCHHHHHH-HHHHCCCC----- T ss_conf 1356403999998359856899999999976245------1478743---675-456788999999-99746546----- Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 3442776556899998618998999687786667567776004899999999999999999713 Q T0607 407 YMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 407 ~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~ 470 (471) ....|| +|+++|... |+|++.+||+.. +++|+||||++++++.+++++|.++|.+|.+. T Consensus 303 ~~~~g~--sDa~~~~~~--g~p~v~~gpg~~-~~~H~~~E~v~~~~l~~~~~~l~~~l~~l~~~ 361 (364) T 2rb7_A 303 GKAHGA--SDARYLGEN--GLTGVVWGAEGF-NTLHSRDECLHIPSLQSIYDPLMQLAREMEEH 361 (364) T ss_dssp EEESSC--CGGGGTGGG--TCCEEECCCCCT-TCTTSTTCEEETTHHHHHHHHHHHHHHHHHC- T ss_pred CCCCEE--CHHHHHHHC--CCCEEEECCCCC-CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH T ss_conf 788716--479999866--999999888886-77588875289999999999999999999874 No 12 >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M40, structural genomics; 2.04A {Bacillus cereus atcc 10987} Probab=100.00 E-value=0 Score=319.18 Aligned_cols=359 Identities=16% Similarity=0.146 Sum_probs=269.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC----CCCCEEEEEEECCC--CC Q ss_conf 8999999999996178979886666666547999999999999983548841789753----89924899987379--98 Q T0607 15 WQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRL----KNRTPLLFMEIPGQ--ID 88 (471) Q Consensus 15 ~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~----~~~~~~v~~~~~g~--~~ 88 (471) ++|+++++|++||+|||+|++ +.+++++|+++|+++ |+++...+. .++.+||+++++|+ +. T Consensus 4 n~~~l~~~l~~lv~i~s~s~~----------e~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~gnv~a~~~g~~~~~ 70 (373) T 3gb0_A 4 NQERLVNEFMELVQVDSETKF----------EAEICKVLTKKFTDL---GVEVFEDDTMAVTGHGAGNLICTLPATKDGV 70 (373) T ss_dssp CHHHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHHHHT---TCEEEECSCHHHHCCSSCCEEEEECCSSTTC T ss_pred CHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCEEEEEECCCCCCC T ss_conf 989999999998169997918----------999999999999977---9979995055335688740999985678999 Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC Q ss_conf 879997340323288776778886354334542135642----2242035899999887631478777368998156433 Q T0607 89 DTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGG----ADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEES 164 (471) Q Consensus 89 ~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~----~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~ 164 (471) |+|+|++||||||+++.| +....+++++|||. .|||+++++++.+++.+++.+.+.+++.++|+++||. T Consensus 71 p~I~l~~H~DtV~~~~~~-------~~~~~~g~i~~~g~~~~g~d~kg~~a~~l~a~~~l~~~~~~~~~i~~~~~~~EE~ 143 (373) T 3gb0_A 71 DTIYFTSHMDTVVPGNGI-------KPSIKDGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNIPHGTIEFIITVGEES 143 (373) T ss_dssp CCEEEEEECCBCSSCSSC-------CCEEETTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEESCGGG T ss_pred CEEEEECCCCCCCCCCCE-------EEECCCCEEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC T ss_conf 889997434637889984-------4420255287057356134654338999999988652355666428998433234 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 64469999999776428960899768777687765588851023688889864477634456774147899999999999 Q T0607 165 GSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISR 244 (471) Q Consensus 165 G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~ 244 (471) |+.++..+... ....++.+..++. .....+.++.+|...+.+++.+. ..|++..++...+++..+.+++.. T Consensus 144 g~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~--~~h~g~~~~~~~~ai~~~~~~l~~ 214 (373) T 3gb0_A 144 GLVGAKALDRE----RITAKYGYALDSD---GKVGEIVVAAPTQAKVNAIIRGK--TAHAGVAPEKGVSAITIAAKAIAK 214 (373) T ss_dssp TSHHHHHSCGG----GCCCSEEEEEEEC---SCTTEEEEEECEEEEEEEEEECB--CCBTTTCGGGSBCHHHHHHHHHTT T ss_pred CCCCHHHHHHH----HCCCCCEEEEECC---CCCCEEEEEECCCEEEEEEEECC--CCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 66316888654----2354405776326---75425899531200358999356--554456854473999999999995 Q ss_pred HHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCC Q ss_conf 74002450213310144430008999999863345556542111001232001012333322100120130210005785 Q T0607 245 IEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIAD 324 (471) Q Consensus 245 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~ 324 (471) +.... .....+.+++.+. ++. T Consensus 215 l~~~~-------------------------------------------------------~~~~~t~~v~~~~----gg~ 235 (373) T 3gb0_A 215 MPLGR-------------------------------------------------------IDSETTANIGRFE----GGT 235 (373) T ss_dssp SCCEE-------------------------------------------------------EETTEEEEEEEEE----ECS T ss_pred CHHCC-------------------------------------------------------CCCCCEEEECEEE----CCC T ss_conf 51215-------------------------------------------------------6689632403144----463 Q ss_pred CCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 1303547489999751278788899999999999973236-633899983157677668998889999999999983697 Q T0607 325 AGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY-NAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDK 403 (471) Q Consensus 325 ~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 403 (471) ..|+||++|++.+|+|+.+..+.+++.+.+++.+...... ...++++... ..+++..++ ++.+.+++++++++++.. T Consensus 236 ~~n~ip~~~~~~~diR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~~~~~~~~~~g~~ 313 (373) T 3gb0_A 236 QTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHADVEVNV-MYPGFKFAD-GDHVVEVAKRAAEKIGRT 313 (373) T ss_dssp CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EECCEECCT-TCHHHHHHHHHHHHTTCC T ss_pred CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCC-CHHHHHHHHHHHHHHCCC T ss_conf 245446713899999735402699999999999999887609669999962-244332467-569999999999985999 Q ss_pred CCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 652344277655689999861899899968778666756777600489999999999999999971 Q T0607 404 PAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ 469 (471) Q Consensus 404 ~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~ 469 (471) +...+..|| +|++.+... |+|++.+||+. .++|+|||+++++++.+++++|+.+|.+|++ T Consensus 314 ~~~~~~~gg--tDa~~~~~~--Gip~v~~g~~~--~~~H~~~E~i~i~~~~~~~~~~~~~i~~l~k 373 (373) T 3gb0_A 314 PSLHQSGGG--SDANVIAGH--GIPTVNLAVGY--EEIHTTNEKIPVEELAKTAELVVAIIEEVAK 373 (373) T ss_dssp CEEEECSSC--CHHHHHHHT--TCCEEEEECCC--BSTTSTTCEEEHHHHHHHHHHHHHHHHHHHC T ss_pred CEEEEEEEE--CHHHHHHHC--CCCEEEECCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC T ss_conf 668764357--689999876--99999988798--8876888298999999999999999999649 No 13 >3ife_A Peptidase T; metallopeptidase, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, protease, zinc, structural genomics; HET: SUC; 1.55A {Bacillus anthracis} Probab=100.00 E-value=0 Score=317.73 Aligned_cols=383 Identities=16% Similarity=0.106 Sum_probs=274.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEE Q ss_conf 88999999999889999999999961789798866666665479999999999999835488417897538992489998 Q T0607 3 KPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFME 82 (471) Q Consensus 3 ~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~ 82 (471) +.+.+++-+ +..+|++|++|++||+|||+|+......|..+.+.++++++.++|+++ |++...+ +..+||+++ T Consensus 14 ~~enl~~~~-~~~~~~~i~~l~~~v~i~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~l---G~~~~~~---d~~gnv~a~ 86 (434) T 3ife_A 14 GTENLYFQS-NAMKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEV---GLTEVTM---DDNGYVMAT 86 (434) T ss_dssp -----CHHH-HHHHHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHH---TCEEEEE---CTTSCEEEE T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEE---CCCCEEEEE T ss_conf 688999999-887999999999764337766887678999878999999999999977---9977998---899769999 Q ss_pred ECCC---CCCEEEEECCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCC----CC Q ss_conf 7379---988799973403232887767--------------------------78886354334542135642----22 Q T0607 83 IPGQ---IDDTVLLYGHLDKQPEMSGWS--------------------------DDLHPWKPVLKNGLLYGRGG----AD 129 (471) Q Consensus 83 ~~g~---~~~~i~l~~H~DvVp~~~~~~--------------------------w~~~Pf~~~~~~~~~~GrG~----~D 129 (471) ++|+ +.|+|+|++|+||||++++|. |.++||...+.+++++|||+ +| T Consensus 87 ~~g~~~~~~p~i~~~~H~DvVP~g~~~~~~P~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~D 166 (434) T 3ife_A 87 LPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGAD 166 (434) T ss_dssp ECCBSSSCCCCEEEEEECCBCTTSCCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHH T ss_pred ECCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCEEEEHHCCCCCCCCCCCEEEECCCCEEECCC T ss_conf 73668898877999611321377898764862644135740321554320331210677555214307976874121456 Q ss_pred CCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEE Q ss_conf 420358999998876314787-7736899815643364469999999776428960899768777687765588851023 Q T0607 130 DGYSAYASLTAIRALEQQGLP-YPRCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGN 208 (471) Q Consensus 130 ~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~ 208 (471) ||+++++++.+++.+.+.+.. .+++.++|+++||.|. |+..+... .+. .++.+..+++ ....++++.+|. T Consensus 167 ~k~~~~~~l~a~~~~~~~~~~~~~~i~~~~~~dEE~g~-g~~~~~~~---~~~-~~~~~v~~~~----~~~~~~~~~~g~ 237 (434) T 3ife_A 167 DKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIGR-GPAHFDVE---AFG-ASFAYMMDGG----PLGGLEYESFNA 237 (434) T ss_dssp HHHHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGGGTC-TGGGCCHH---HHC-CSEEEECCCC----STTEEECCBCEE T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-HHHHHHHH---HHH-CCEEEEEECC----CCCCCCEECEEE T ss_conf 46779999999999986326889868999964633362-48999876---310-3047999437----876534003168 Q ss_pred EEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68888986447763445677414789999999999974002450213310144430008999999863345556542111 Q T0607 209 LVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWI 288 (471) Q Consensus 209 ~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (471) .+++++++|.+ +||+..+..+.|++..+++++..+........ T Consensus 238 ~~~~i~v~G~~--~Hag~~p~~g~nai~~~~~~i~~l~~~~~~~~----------------------------------- 280 (434) T 3ife_A 238 AGAKLTFNGTN--THPGTAKNKMRNATKLAMEFNGHLPVEEAPEY----------------------------------- 280 (434) T ss_dssp EEEEEEEECBC--CCGGGCTTTCBCHHHHHHHHHHTSCTTCSGGG----------------------------------- T ss_pred EEEEEEEEEEC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC----------------------------------- T ss_conf 89999999866--86576865336899999999999876236654----------------------------------- Q ss_pred HHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CC Q ss_conf 0012320010123333221001201302100057851303547489999751278788899999999999973236--63 Q T0607 289 DSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY--NA 366 (471) Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~--~~ 366 (471) .+...+.. .++..|.++..+.+.+++|.....+.+...+.+++.+++.... .. T Consensus 281 --------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~ 335 (434) T 3ife_A 281 --------------------TEGYEGFY-----HLLSLNGDVEQSKAYYIIRDFDRKNFEARKNTIENIVKQMQEKYGQD 335 (434) T ss_dssp --------------------CCTTCCEE-----EEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHCGG T ss_pred --------------------CCCCCCEE-----CCCEEECCEEECEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf --------------------55777642-----68333111020113103146650109999999999999999866676 Q ss_pred EEEEEEEECC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 3899983157-677668998889999999999983697652344277655689999861899899968778666756777 Q T0607 367 KVDFKIQNGG-SKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPN 445 (471) Q Consensus 367 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~ 445 (471) .++++..... .+++..+.+++ +.+++++++++++..+...+..|| +|++.|... |+|++.|||+. .++|+|| T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~a~~~~g~~~~~~~~~gg--tDa~~~~~~--gip~v~~Gpg~--~~~H~~n 408 (434) T 3ife_A 336 AVVLEMNDQYYNMLEKIEPVRE-IVDIAYEAMKSLNIEPNIHPIRGG--TDGSQLSYM--GLPTPNIFTGG--ENYHGKF 408 (434) T ss_dssp GEEEEEEEEECCTHHHHGGGTH-HHHHHHHHHHHTTCCCEECCBSSC--CHHHHHHHT--TCCCCEECCSE--ESTTSTT T ss_pred EEEEEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEEEEE--CHHHHHHHC--CCCEEEECCCC--CCCCCCC T ss_conf 3899996653377787798889-999999999982999768775358--789999876--99999988898--8874887 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 6004899999999999999999713 Q T0607 446 EFLHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 446 E~~~i~~l~~~~~il~~~l~~la~~ 470 (471) ||++++++.+++++|+++|.+|++| T Consensus 409 E~i~i~dl~~~~~i~~~~i~~~~~~ 433 (434) T 3ife_A 409 EYVSVDVMEKAVQVIIEIARRFEEQ 433 (434) T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEHHHHHHHHHHHHHHHHHHHCC T ss_conf 1688999999999999999999735 No 14 >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20/M25/M40, structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Probab=100.00 E-value=0 Score=317.69 Aligned_cols=346 Identities=16% Similarity=0.141 Sum_probs=248.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEE--CCCCCC Q ss_conf 998899999999999617897988666666654799999999999998354884178975389924899987--379988 Q T0607 12 CQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEI--PGQIDD 89 (471) Q Consensus 12 ~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~--~g~~~~ 89 (471) .+..+++.|++|++||+|||+|++ +.+++++|.+||+++| ++++.. ++ +++..+ .+++.| T Consensus 6 i~~~~~e~v~~l~~Lv~ipS~s~~----------e~~~~~~i~~~l~~~G---~~~~~~---~~--~~~~~~~~~~~~~p 67 (356) T 3ct9_A 6 IPTMTAEAVSLLKSLISIPSISRE----------ETQAADFLQNYIEAEG---MQTGRK---GN--NVWCLSPMFDLKKP 67 (356) T ss_dssp HHHHHHHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHHHHTT---CCEEEE---TT--EEEEECSSCCTTSC T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEEE---CC--CEEEEEECCCCCCC T ss_conf 767189999999999579999988----------8999999999999779---856982---69--88999855689998 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-H Q ss_conf 799973403232887767788863543345421356422242035899999887631478777368998156433644-6 Q T0607 90 TVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSY-D 168 (471) Q Consensus 90 ~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~-g 168 (471) +|+|++|+||||+++ .|+++||+++++++++||||+.|||+++++.+.+++.+++.+.. .++.+++..+||.++. + T Consensus 68 ~i~~~~H~DtVp~~~--~w~~~Pf~~~~~~~~i~grG~~D~k~~~~~~l~a~~~l~~~~~~-~~~~~~~~~~ee~~g~~~ 144 (356) T 3ct9_A 68 TILLNSHIDTVKPVN--GWRKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQLCRTSQN-YNLIYLASCEEEVSGKEG 144 (356) T ss_dssp EEEEEEECCBCCCC---------CCCEECSSEEESTTTTTTHHHHHHHHHHHHHHTTSCCS-SEEEEEEECCGGGTCTTT T ss_pred EEEEECCCCCCCCCC--CCCCCCCCCEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEECCCEEECCCCCCC T ss_conf 799984678467887--77579963301252687235566654167999999986652343-035540415531334576 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99999997764289608997687776877655888510236888898644776344567741478999999999997400 Q T0607 169 LPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDE 248 (471) Q Consensus 169 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471) ...++. .....++.+..+ +....+.+|+||.++++++++|.. +||+.... .|++..+++++..+... T Consensus 145 ~~~~~~----~~~~~~~~~~~~-----~~~~~i~~g~~G~~~~~i~v~G~~--~Hs~~~~~--~nai~~~~~~~~~l~~~ 211 (356) T 3ct9_A 145 IESVLP----GLPPVSFAIVGE-----PTEMQPAIAEKGLMVLDVTATGKA--GHAARDEG--DNAIYKVLNDIAWFRDY 211 (356) T ss_dssp HHHHGG----GSCCCSEEEECC-----SBTTCCEEEECCCEEEEEEEECBC--CBTTSSCC--BCTTGGGHHHHHHHHHC T ss_pred CCHHHH----CCCCCCEEEECC-----CCCCCCCCCCCEEEEEEEEEEECC--CCCCCCCC--CCHHHHHHHHHHHHHHH T ss_conf 301121----146665478646-----655441012646899999988677--33588532--48599999999999864 Q ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCE Q ss_conf 24502133101444300089999998633455565421110012320010123333221001201302100057851303 Q T0607 249 NTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNV 328 (471) Q Consensus 249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nv 328 (471) ...... .....++.+++.|.+ +.+.|+ T Consensus 212 ~~~~~~-------------------------------------------------~~~~~~~~~~~~i~g----G~~~nv 238 (356) T 3ct9_A 212 RFEKES-------------------------------------------------PLLGPVKMSVTVINA----GTQHNV 238 (356) T ss_dssp CCSCCB-------------------------------------------------TTTBSCEEEEEEEEE----CSSTTB T ss_pred HCCCCC-------------------------------------------------CCCCCCEEEEEEEEC----CCCCCC T ss_conf 304478-------------------------------------------------765563010038932----776676 Q ss_pred ECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 54748999975127878889999999999997323663389998315767766899888999999999998369765234 Q T0607 329 MRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYM 408 (471) Q Consensus 329 ip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 408 (471) ||++|++++|+|+.+..+.+++.+.+++.+.... .......++...+.++|++.++.+ + . ..... T Consensus 239 Ip~~~~~~~~~R~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~-~----~--~~~~g 303 (356) T 3ct9_A 239 VPDKCTFVVDIRSNELYSNEDLFAEIRKHIACDA--------KARSFRLNSSRIDEKHPFVQKAVK-M----G--RIPFG 303 (356) T ss_dssp CCSEEEEEEEEECCTTCCHHHHHHHHHHHCCSEE--------EESCSCSCCEECCTTSHHHHHHHH-T----T--CCCEE T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH--------HHCCCEECCCCCCCCCHHHHHHHH-H----C--CEEEE T ss_conf 8631389988842898889999999999877664--------312210001356876889999985-2----4--14320 Q ss_pred ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 42776556899998618998999687786667567776004899999999999999999 Q T0607 409 GEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF 467 (471) Q Consensus 409 ~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l 467 (471) ..+|+ +++ ..++|++.||||.. .++|+||||+++++|.+++++|.++|..| T Consensus 304 ~~~~~--d~~-----~~g~~~v~~Gpg~~-~~~H~~dE~v~i~~l~~~~~v~~~~l~~L 354 (356) T 3ct9_A 304 SPTLS--DQA-----LMSFASVKIGPGRS-SRSHTAEEYIMLKEIEEAIGIYLDLLDGL 354 (356) T ss_dssp ECSCC--GGG-----GCCSCEEECCSSBG-GGTTSTTCEEEHHHHHHHHHHHHHHHTTC T ss_pred CCCHH--HHH-----HCCCCEEEECCCCC-CCCCCCCCEEEHHHHHHHHHHHHHHHHHC T ss_conf 16576--687-----63999899999875-66879986099999999999999999720 No 15 >1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Probab=100.00 E-value=2.6e-37 Score=247.69 Aligned_cols=369 Identities=14% Similarity=0.126 Sum_probs=254.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEE Q ss_conf 98899999999999617897988666666654799999999999998354884178975389924899987379-98879 Q T0607 13 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTV 91 (471) Q Consensus 13 ~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i 91 (471) ++..+++|+.-++|-++|.+|.+ |.+.++++++||+++ |+++ .+..+...+++++++|. ++|+| T Consensus 28 ~~~~~~li~~rr~lh~~PEl~~~----------E~~ta~~i~~~L~~~---G~~v--~~~~~~~t~vva~l~g~~~gp~i 92 (404) T 1ysj_A 28 KAFHTRLINMRRDLHEHPELSFQ----------EVETTKKIRRWLEEE---QIEI--LDVPQLKTGVIAEIKGREDGPVI 92 (404) T ss_dssp HHHHHHHHHHHHHHHHSCCCTTC----------CHHHHHHHHHHHHHT---TCEE--CCCTTCSSCEEEEEECSSCCCEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHC---CCCE--EEECCCCCEEEEEEECCCCCCEE T ss_conf 99999999999999968687880----------899999999999988---9918--99659988799999089989869 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH Q ss_conf 99734032328877677888635433454213564222420358999998876314787773689981564336446999 Q T0607 92 LLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPF 171 (471) Q Consensus 92 ~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~ 171 (471) +|.+|||+||..+ |+.+||... .+|.+|++|..+++..+++++.+++..+. ...+++.++|+++||.++ |+.. T Consensus 93 ~l~ah~DaVP~~e---~~~~p~~~~-~~G~~h~cG~~~~~a~~l~~~~~l~~~~~--~~~g~v~~if~p~EE~~~-G~~~ 165 (404) T 1ysj_A 93 AIRADIDALPIQE---QTNLPFASK-VDGTMHACGHDFHTASIIGTAMLLNQRRA--ELKGTVRFIFQPAEEIAA-GARK 165 (404) T ss_dssp EEEEECCCBSCCC---CCCCTTCCS-STTCBCTTSHHHHHHHHHHHHHHHHTCGG--GCSSEEEEEEESCTTTTC-HHHH T ss_pred EEEEECCCCCCCC---CCCCCCCCC-CCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCC-CCHH T ss_conf 9998775587745---668875301-08854055554331157888888888752--579858998226433222-1024 Q ss_pred HHHHHHHHCCCCEEEEECCCCCC-CCCCCEE--EEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 99997764289608997687776-8776558--88510236888898644776344567741478999999999997400 Q T0607 172 YIELLKERIGKPSLVICLDSGAG-NYEQLWM--TTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDE 248 (471) Q Consensus 172 ~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~i--~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~ 248 (471) ++... .+...++++....... ..+.... ....++..+++++++|++. |++. +..+.|++.++..++..+... T Consensus 166 ~i~~g--~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~v~~~Gk~a--Has~-P~~g~nai~a~~~~i~~l~~~ 240 (404) T 1ysj_A 166 VLEAG--VLNGVSAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGG--HASI-PNNSIDPIAAAGQIISGLQSV 240 (404) T ss_dssp HHHTT--TTTTEEEEEEEEEETTSCTTEEEECSEEEECCEEEEEEEEECC-----------CCCCHHHHHHHHHHHHC-- T ss_pred HHHCC--CCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCCC--CCCC-CCCCCCHHHHHHHHHHHHHHH T ss_conf 77626--543111365214678987742674257543332499999947887--8664-645420678999999999863 Q ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCE Q ss_conf 24502133101444300089999998633455565421110012320010123333221001201302100057851303 Q T0607 249 NTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNV 328 (471) Q Consensus 249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nv 328 (471) ..... ......+++++.+. ++.+.|+ T Consensus 241 ~~~~~--------------------------------------------------~~~~~~~v~~~~i~----gG~~~Nv 266 (404) T 1ysj_A 241 VSRNI--------------------------------------------------SSLQNAVVSITRVQ----AGTSWNV 266 (404) T ss_dssp -----------------------------------------------------------CCEEEEEEEE----ECSCSSS T ss_pred HCCCC--------------------------------------------------CCCCCCCCCEEEEE----CCCCCEE T ss_conf 10132--------------------------------------------------33553002059996----7974537 Q ss_pred ECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE Q ss_conf 54748999975127878889999999999997323-66338999831576776689988899999999999836976523 Q T0607 329 MRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPP-YNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAY 407 (471) Q Consensus 329 ip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 407 (471) ||++|++++++|..+.++.+++.+++++.++.... .+.++++++.. .+|+.. +++.+.+.++++.++++...... T Consensus 267 IP~~a~l~~~iR~~~~e~~~~~~~~i~~~~~~~a~~~g~~~ei~~~~-~~p~~~---nd~~~~~~~~~~~~~~g~~~v~~ 342 (404) T 1ysj_A 267 IPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKWFP-YLPSVQ---NDGTFLNAASEAAARLGYQTVHA 342 (404) T ss_dssp CCSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EECCEE---ECGGGHHHHHHHHHHTTCEEEEC T ss_pred ECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCC---CCHHHHHHHHHHHHHHCCCCCCC T ss_conf 32420468760233167778888899887524533323343111233-478878---99999999999999848565358 Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 44277655689999861899899968778666756777600489999999999999999971 Q T0607 408 MGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ 469 (471) Q Consensus 408 ~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~ 469 (471) ....|+ .|.++|.+..|++ .+.+|++.. ...|+|++.++.+-|..++++|+.+..++.+ T Consensus 343 ~~~~gs-eDf~~~~~~vP~~-~~~iG~g~~-~~~H~p~f~~de~~l~~g~~~~~~lal~~L~ 401 (404) T 1ysj_A 343 EQSPGG-EDFALYQEKIPGF-FVWMGTNGT-EEWHHPAFTLDEEALTVASQYFAELAVIVLE 401 (404) T ss_dssp CCBSSC-CTHHHHHTTSCEE-EEEEECCCS-SCTTCTTCCCCTTHHHHHHHHHHHHHHHHHH T ss_pred CCCCCC-CHHHHHHHHHCEE-EEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 998781-1699998762879-999918999-8677988807989999999999999999986 No 16 >3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Probab=100.00 E-value=4.1e-35 Score=234.12 Aligned_cols=382 Identities=10% Similarity=0.032 Sum_probs=260.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC------------ Q ss_conf 99999999988999999999996178979886666666547999999999999983548841789753------------ Q T0607 5 QGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRL------------ 72 (471) Q Consensus 5 ~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~------------ 72 (471) .++.+|| +++++++++.-+.|-++|-+|.+ |.+.+++++++|+++ |++++.... T Consensus 3 ~~~~~~~-~~~~~~l~~~rr~lH~~PEls~~----------E~~T~~~i~~~L~~~---G~~v~~~~~~~~~~~~~~~~~ 68 (445) T 3io1_A 3 LQLDEYL-RQLAPSMTQWRRDFHLHAESGWL----------EFRTASKVADILDGL---GYQLALGRDVIDADSRMGLPD 68 (445) T ss_dssp CCHHHHH-HTTHHHHHHHHHHHHHTCCCTTC----------CHHHHHHHHHHHHHT---TCEEEEGGGTSCSTTCCSCCC T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHHHHC---CCEEEECCCCCCCCCCCCCCC T ss_conf 5699999-98789999999999858787882----------599999999999978---996786455555311136653 Q ss_pred ------------------------CCCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf ------------------------8992489998737-998879997340323288776778886354334542135642 Q T0607 73 ------------------------KNRTPLLFMEIPG-QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGG 127 (471) Q Consensus 73 ------------------------~~~~~~v~~~~~g-~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~ 127 (471) .++...|++++.+ +.+|+|+|.+|||+||..+...| ||.+..++...+++|. T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~tgvva~l~~g~~gp~I~l~ah~DalPv~e~~~~---~~~p~~~~~~~~~~G~ 145 (445) T 3io1_A 69 EETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRPGPTLAFRVDMDALDLNEQHDD---SHRPHRDHFASCNAGM 145 (445) T ss_dssp HHHHHHHHHHHHTTTCCTTTGGGGTTTCCCEEEEEECSSCCCEEEEEEECCCCCC------------------------- T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCC---CCCCEECCCCCCCCCC T ss_conf 1000000000111356532233346776179999818898998999988771776235789---8774010233478885 Q ss_pred CCCCH---HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCEE- Q ss_conf 22420---35899999887631478-77736899815643364469999999776428960899768777687-76558- Q T0607 128 ADDGY---SAYASLTAIRALEQQGL-PYPRCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNY-EQLWM- 201 (471) Q Consensus 128 ~D~k~---~~~~~l~a~~~l~~~~~-~~~~~~~~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~i- 201 (471) .+++| ..++++.+++.+.+... ..+.+.++|+++||.++ |...++.. ..+...|.++........+ +.... T Consensus 146 ~hacGhd~~~a~~l~a~~~l~~~~~~~~g~v~l~~~~~EE~~~-g~~~~i~~--~~~~~~d~v~~~h~~~~~~~g~v~~~ 222 (445) T 3io1_A 146 MHACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTR-GARAMVAA--GVVDDVDYFTAIHIGTGVPAGTVVCG 222 (445) T ss_dssp ---CTTCTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTTTC-HHHHHHHT--TTTTTCSEEEEEEEEEEEETTBEESC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-CHHHHHHH--CCCCCCCCEEEEECCCCCCCCEEEEC T ss_conf 0068872899999999999986136679679996303455663-26999973--65545550267411347877427625 Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 88510236888898644776344567741478999999999997400245021331014443000899999986334555 Q T0607 202 TTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQV 281 (471) Q Consensus 202 ~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 281 (471) ....+|..++++++.|.+. |++..+..+.|++.++++++..+....... T Consensus 223 ~g~~~g~~~~~i~~~G~~a--H~as~P~~g~nAi~~aa~~i~~l~~~~~~~----------------------------- 271 (445) T 3io1_A 223 GDNFMATTKFDVQFSGVAA--HAGGKPEDGRNALLAAAQAALGLHAIPPHS----------------------------- 271 (445) T ss_dssp CCCBCEEEEEEEEEECCCS--STTCCGGGCCCHHHHHHHHHHHHHTCCCBT----------------------------- T ss_pred CCCCCCCEEEEEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC----------------------------- T ss_conf 7753222158999987735--676687345557889999999999987525----------------------------- Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 65421110012320010123333221001201302100057851303547489999751278788899999999999973 Q T0607 282 YSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQN 361 (471) Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~ 361 (471) ....+++++.+ +++.+.||||++|++++++|..+.++.+.+.+++++.++.+ T Consensus 272 ------------------------~~~~~~~~g~i----~gG~~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~ 323 (445) T 3io1_A 272 ------------------------AGASRVNVGVM----QAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVAGA 323 (445) T ss_dssp ------------------------TBCEEEEEEEE----EECSCTTSCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHH T ss_pred ------------------------CCCEEEEEEEE----ECCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH T ss_conf ------------------------77649999998----53556752897458999961588899899999999999999 Q ss_pred CC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC----CEEECCCCHHHHHHHHHHHCCCC--EEEECC Q ss_conf 23-663389998315767766899888999999999998369765----23442776556899998618998--999687 Q T0607 362 PP-YNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPA----AYMGEGGTIPFMSMLGEQFPKAQ--FMITGV 434 (471) Q Consensus 362 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~gGt~~~~~~~~~~~~~~p--~~~~G~ 434 (471) +. .+.++++++... ++|.. +++.+.+.++++.+++.+.+. ..+..|+ .|.++|.+.+|..+ ...+++ T Consensus 324 a~~~g~~~ei~~~~~-~pp~~---~d~~~~~~~~~~a~~~~g~~~~~~~~~~~~gs--eDf~~~~~~vp~~~~~~~~~~~ 397 (445) T 3io1_A 324 AAMYEARYELRMMGA-ATASA---PSPAWVDYLREQAARVPGVQQAVDRIAAPAGS--EDATLMMARVQARGGLASYMIF 397 (445) T ss_dssp HHHTTCEEEEEEEEE-ECCCC---CCHHHHHHHHHHHHHSTTCCBCBSSCCCCCBC--CTHHHHHHHHHHTTCEEEEEEE T ss_pred HHHHCCEEEEEEEEC-CCCCC---CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCEEEEEEE T ss_conf 999797699999857-88977---99999999999999852942232668898273--3899999970734634899995 Q ss_pred CCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 786-6675677760048999999999999999997139 Q T0607 435 LGP-HSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 435 g~~-~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) |.. ....|+|+-.++-+.+..++++|+++...|..++ T Consensus 398 g~~~~~~lH~p~f~~dE~~l~~G~~~~a~~aldyl~~~ 435 (445) T 3io1_A 398 GTELSAGHHNEKFDFDESVMAVAVETLARVALNFPWQR 435 (445) T ss_dssp EEEC-----------CCCHHHHHHHHHHHHHHTCCSCC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79998578898996898999999999999999998875 No 17 >1z2l_A Allantoate amidohydrolase; ALLC, purine catabolism, allantoin utilization, structural genomics, PSI, protein structure initiative; HET: 1AL; 2.25A {Escherichia coli K12} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Probab=100.00 E-value=2.2e-36 Score=242.00 Aligned_cols=383 Identities=11% Similarity=0.042 Sum_probs=235.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCC--CCE Q ss_conf 988999999999996178979886666666547999999999999983548841789753899248999873799--887 Q T0607 13 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQI--DDT 90 (471) Q Consensus 13 ~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~--~~~ 90 (471) .++++++-++|.+|.++.+.+.....+.+.++.+.++++||+++|+++ |+++++ +..+||+++++|++ +|+ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~s~~e~~a~~~l~~~l~~~---G~ev~~----D~~GNvia~~~G~~~~~p~ 77 (423) T 1z2l_A 5 THFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAAS---GLETRF----DEVGNLYGRLNGTEYPQEV 77 (423) T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHT---TCEEEE----CTTSCEEEEECCSSEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECCCCCCCCE T ss_conf 468999999999998548999997406858999999999999999977---998998----7883799997568999988 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE--EEEEC-------C Q ss_conf 99973403232887767788863543345421356422242035899999887631478777368--99815-------6 Q T0607 91 VLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCI--LIIEA-------C 161 (471) Q Consensus 91 i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~--~~~~~-------~ 161 (471) |+|++||||||++...+|+.+||.+...++.++++|..|+|+.....+.+.+............. -.... + T Consensus 78 i~l~gH~DvVP~gg~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (423) T 1z2l_A 78 VLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICD 157 (423) T ss_dssp EEEEEECCCCTTBCSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHHHHHTTCCCGGGTSSCCC T ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHEECHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 99979735189998636765643031011102103777888811000122100100110122310110110210001122 Q ss_pred CCCCCHHHHHHHHHH-----HHHCCCCEE-----EEECCCC--CCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCC-CC Q ss_conf 433644699999997-----764289608-----9976877--7687765588851023688889864477634456-77 Q T0607 162 EESGSYDLPFYIELL-----KERIGKPSL-----VICLDSG--AGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGS-AS 228 (471) Q Consensus 162 EE~G~~g~~~~~~~~-----~~~~~~~d~-----~~~~~~~--~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~-~~ 228 (471) ......+. ...... .......+. .....+. ...........+.+|..++.+++.+... |++. .. T Consensus 158 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~ 234 (423) T 1z2l_A 158 AKGNSFVD-AMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESN--HAGTTPM 234 (423) T ss_dssp SSSCCHHH-HHHHTTCCCCSSCCCCCCCEEEEEEEEECCSSHHHHTTCCEEEEEEECEEEEEEEEEECCCE--ETTTSCG T ss_pred CCCCCHHH-HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCEEEEEECCCEEEEEEEEECCC--CCCCCCH T ss_conf 45652133-44530466210013554443345540224665200025552135430230368999970123--4543210 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 41478999999999997400245021331014443000899999986334555654211100123200101233332210 Q T0607 229 GIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWR 308 (471) Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (471) ....++..++.+....+..... ..... T Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~ 261 (423) T 1z2l_A 235 GYRRDTVYAFSRICHQSVEKAK-----------------------------------------------------RMGDP 261 (423) T ss_dssp GGCCCHHHHHHHHHHHHHHHHH-----------------------------------------------------HHCTT T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------HHCCC T ss_conf 1346788888999999998875-----------------------------------------------------32222 Q ss_pred EEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCCCCCCCH Q ss_conf 01201302100057851303547489999751278788899999999999973236-63389998315767766899888 Q T0607 309 PALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY-NAKVDFKIQNGGSKGWNAPLLSD 387 (471) Q Consensus 309 ~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 387 (471) .......+ ..++...|++|+.+.+.+++|..+..+.+.+.+.+++.+.+.... ...+.++.... .+..+ .++ T Consensus 262 ~~~~~~~~---~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~d~ 334 (423) T 1z2l_A 262 LVLTFGKV---EPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMD---EEPVP-MNK 334 (423) T ss_dssp CEEECCCE---EEESCCTTEECCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---ECCEE-CCH T ss_pred CCCCCEEE---ECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCC-CCH T ss_conf 34421255---215565554443058997124671776678888999986542002475312211036---88989-998 Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999999998369765234427765568999986189989-9968778666756777600489999999999999999 Q T0607 388 WLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQF-MITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYS 466 (471) Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~-~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~ 466 (471) .+++++++++++++..++..++.|| +|++.|++. +|+ +.|||+. ++.+|+||||++++++.+++++|+.+|.+ T Consensus 335 ~lv~~~~~a~~~~g~~~~~~~sggg--TDa~~~~~~---~p~~~~fgPg~-~~~aH~p~E~v~v~~l~~~~~ila~~i~~ 408 (423) T 1z2l_A 335 ELVATLTELCEREKLNYRVMHSGAG--HDAQIFAPR---VPTCMIFIPSI-NGISHNPAERTNITDLAEGVKTLALMLYQ 408 (423) T ss_dssp HHHHHHHHHHHHTTCCEEEEEESSC--CTHHHHTTT---SCEEEEEECCG-GGCCSSTTCCCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHCC---CCEEEEEECCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999973999658403266--099998641---98899996489-87868956042899999999999999999 Q ss_pred HHHCC Q ss_conf 97139 Q T0607 467 FSQKK 471 (471) Q Consensus 467 la~~~ 471 (471) ||.|+ T Consensus 409 La~~~ 413 (423) T 1z2l_A 409 LAWQK 413 (423) T ss_dssp HHSCC T ss_pred HHHHH T ss_conf 86315 No 18 >2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, complex with N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Probab=100.00 E-value=9.4e-35 Score=231.89 Aligned_cols=361 Identities=11% Similarity=0.091 Sum_probs=232.8 Q ss_pred HHHHHHHHHHH-HCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC- Q ss_conf 99999999999-6178979-------88666666654799999999999998354884178975389924899987379- Q T0607 16 QEEILPSLCDY-IKIPNKS-------PHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ- 86 (471) Q Consensus 16 ~~~~i~~l~~l-v~ipS~s-------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~- 86 (471) .+++.+.|.+. .+|.... ...-.+...++.+.++++||.+||+++ |+++++ |..+||+++++|+ T Consensus 31 ~~rl~~~~~~~~~~~g~~~~~~~~~~~~g~~R~a~t~~d~~~r~~l~~~l~~l---Gl~v~v----D~~GNv~a~~~G~~ 103 (474) T 2v8h_A 31 SGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESL---GCKVKV----DKIGNMFAVYPGKN 103 (474) T ss_dssp TTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHT---TCEEEE----BTTCCEEEEECCSS T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECCCC T ss_conf 89999999999986087544577889997522549999999999999999977---997999----37833999966789 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCC Q ss_conf 98879997340323288776778886354334542135642224203589999988763147877-73689981564336 Q T0607 87 IDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESG 165 (471) Q Consensus 87 ~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G 165 (471) ++|+|+|.|||||||.| |..|+..++++.+.+++.+++.+..+ .++.+++..+||.+ T Consensus 104 ~~p~I~lgsHlDTVP~G----------------------G~~DG~~gV~a~le~lr~l~~~g~~~~~~i~~i~~~~EEg~ 161 (474) T 2v8h_A 104 GGKPTATGSHLDTQPEA----------------------GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGA 161 (474) T ss_dssp CCSCEEEEECCCCCSSB----------------------CSSTTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSCS T ss_pred CCCEEEEECCCCCCCCC----------------------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC T ss_conf 99868994874417999----------------------87567543055799999887618767877435553033444 Q ss_pred CH-----HHHHHH-----HHHHHHCCC-----------------------------CE-E--EEECCCCCC--CCCCCEE Q ss_conf 44-----699999-----997764289-----------------------------60-8--997687776--8776558 Q T0607 166 SY-----DLPFYI-----ELLKERIGK-----------------------------PS-L--VICLDSGAG--NYEQLWM 201 (471) Q Consensus 166 ~~-----g~~~~~-----~~~~~~~~~-----------------------------~d-~--~~~~~~~~~--~~~~~~i 201 (471) .. +...+. ......... .. + ..++.+... ......+ T Consensus 162 ~f~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~e~hieqg~vl~~~~~~~gv 241 (474) T 2v8h_A 162 RFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGI 241 (474) T ss_dssp SSSCTTHHHHHHTTSSCHHHHHTCBCSSCSSCCBHHHHHHHHTCCCSBCSCTTTSCCSEEEEEEECCSSHHHHTTCSEEE T ss_pred CCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHCCCCCCE T ss_conf 44643355213216546888844644467511449999986687654442246653006777530247412322677640 Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8851023688889864477634456774147-899999999999740024502133101444300089999998633455 Q T0607 202 TTSLRGNLVGKLTVELINEGVHSGSASGIVA-DSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQ 280 (471) Q Consensus 202 ~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 280 (471) ..+..|..++.++++|... |++..+.... ++..++.+++..+.... T Consensus 242 v~gi~g~~~~~~~~~G~~~--haGttPm~~r~dal~aa~~~~~~~~~~~------------------------------- 288 (474) T 2v8h_A 242 VTGVQAYNWQKVTVHGVGA--HAGTTPWRLRKDALLMSSKMIVAASEIA------------------------------- 288 (474) T ss_dssp EEEECEEEEEEEEEECCCE--ETTTCCGGGCCCHHHHHHHHHHHHHHHH------------------------------- T ss_pred EEEEEEEEEEEEEEEECCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH------------------------------- T ss_conf 3664002675222241255--4666703221247999999999977642------------------------------- Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 56542111001232001012333322100120130210005785130354748999975127878889999999999997 Q T0607 281 VYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQ 360 (471) Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~ 360 (471) .....+.+++.+. .++++.|+||++|++++|+|..+.+..+++.+.+++.+++ T Consensus 289 ------------------------~~~~~~~TvG~i~---~~p~a~NvIPg~v~~~vDiR~~~~e~l~~~~~~l~~~i~~ 341 (474) T 2v8h_A 289 ------------------------QRHNGLFTCGIID---AKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDR 341 (474) T ss_dssp ------------------------HHTTCEEECCCEE---EESCCTTEECSEEEEEEEEEESCHHHHHHHHHHHHHHHHH T ss_pred ------------------------HCCCEEEECCEEE---CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf ------------------------0364157424053---2664435557469997630569989999999999999999 Q ss_pred HCCC--CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 3236--633899983157677668998889999999999983-6976523442776556899998618998999687786 Q T0607 361 NPPY--NAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTY-YDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGP 437 (471) Q Consensus 361 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~ 437 (471) .... ...++++++.....|+. + .++.+++++++++... .+.+...+.+|+ ++|+..+++ .+|+.++...+. T Consensus 342 ~~~~~~~~~v~~~~e~~~~~p~v-~-~d~~lv~~v~~Aa~~~~~~~~~~~m~SGA-GhDA~~~a~---~~Pt~MiFvPs~ 415 (474) T 2v8h_A 342 LIKINDGGALSYESETLQVSPAV-N-FHEVCIECVSRSAFAQFKKDQVRQIWSGA-GHDSCQTAP---HVPTSMIFIPSK 415 (474) T ss_dssp HTTCCTTCCCEEEEEEEEEECCE-E-CCHHHHHHHHHHHHHHSCGGGEEEEEESS-CCTHHHHTT---TSCEEEEEECCG T ss_pred HHHHHCCCCEEEEEEEEECCCCC-C-CCHHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHC---CCCEEEEECCCC T ss_conf 98874177237998983048987-8-79999999999999851699960516236-999999867---488999948685 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 6675677760048999999999999999997139 Q T0607 438 HSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 438 ~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) ++.+|+|+||++++++.++++||+..|.+|.++| T Consensus 416 ~GiSH~p~E~~~~ed~~~g~~VL~~~vl~~d~~~ 449 (474) T 2v8h_A 416 DGLSHNYYEYSSPEEIENGFKVLLQAIINYDNYR 449 (474) T ss_dssp GGCCSSTTCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9877990328899999999999999999997544 No 19 >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Probab=100.00 E-value=1.2e-35 Score=237.33 Aligned_cols=186 Identities=17% Similarity=0.226 Sum_probs=153.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC--CCCEE Q ss_conf 8899999999999617897988666666654799999999999998354884178975389924899987379--98879 Q T0607 14 QWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ--IDDTV 91 (471) Q Consensus 14 ~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~--~~~~i 91 (471) +.+++.|++|++||+|||+|++. .+.+++++|++||+++ |+++++++..++++|++++++|. +.|+| T Consensus 7 ~~~~~~v~~l~~lv~i~S~sp~~--------~e~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~~~~~g~~~~~~~i 75 (198) T 1q7l_A 7 EEEHPSVTLFRQYLRIRTVQPKP--------DYGAAVAFFEETARQL---GLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75 (198) T ss_dssp CCCCHHHHHHHHHHTSCCBTTSC--------CHHHHHHHHHHHHHHH---TCEEEEEEEETTEEEEEEEECCSSTTSCEE T ss_pred CHHHHHHHHHHHHHCCCCCCCCC--------CHHHHHHHHHHHHHHC---CCEEEEEECCCCCEEEEEEEECCCCCCCEE T ss_conf 11379999999996889999494--------8999999999999987---992899971799758999970689988869 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCC-HH Q ss_conf 99734032328877677888635433-4542135642224203589999988763147877-736899815643364-46 Q T0607 92 LLYGHLDKQPEMSGWSDDLHPWKPVL-KNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY-PRCILIIEACEESGS-YD 168 (471) Q Consensus 92 ~l~~H~DvVp~~~~~~w~~~Pf~~~~-~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~-~~~~~~~~~~EE~G~-~g 168 (471) +|++|+||||+++ ..|+++||.+.. .|+++||||++|||+++++++++++.+++.+..+ .++.++|+++||.|+ .| T Consensus 76 ll~~H~DtVp~~~-~~W~~~Pf~~~~~~dg~lyGRGa~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~gg~~g 154 (198) T 1q7l_A 76 LLNSHTDVVPVFK-EHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQG 154 (198) T ss_dssp EEEEECCBCCCCG-GGCSSCTTTCCBCTTSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTT T ss_pred EEECCCCCCCCCC-CCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH T ss_conf 9981555027766-677569963011135734278764575038999999999998299888758999986744373747 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCEEEEEEEEEEEEEE Q ss_conf 99999997764289608997687776877-6558885102368888 Q T0607 169 LPFYIELLKERIGKPSLVICLDSGAGNYE-QLWMTTSLRGNLVGKL 213 (471) Q Consensus 169 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~i~~g~kG~~~~~i 213 (471) +.++++........+++++... ..+++ .+.+++|+||.+|+++ T Consensus 155 ~~~l~~~~~~~~~~~~~~id~g--~~~p~~~~~v~~~~kG~~~~~v 198 (198) T 1q7l_A 155 MELFVQRPEFHALRAGFALDEG--IANPTDAFTVFYSERSPWWVRV 198 (198) T ss_dssp HHHHTTSHHHHTTCEEEEEECC--CCCSSSSEEEEECCSSCGGGCC T ss_pred HHHHHHCHHHCCCCEEEEEECC--CCCCCCCCEEEEECCEEEEEEC T ss_conf 9999847665289878999789--4389999879997135799979 No 20 >1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG, AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Probab=99.97 E-value=4.2e-28 Score=190.64 Aligned_cols=368 Identities=13% Similarity=0.063 Sum_probs=228.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC Q ss_conf 99999999999617897988666666654799999999999998354884178975389924899987379988799973 Q T0607 16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG 95 (471) Q Consensus 16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~ 95 (471) .|+++++-++|=+.|-+|.+ |.+.+++|+++|+++ |++++.-. + ...+++.+.++.+|+|+|.+ T Consensus 27 ~~~li~~rr~lH~~PEl~~~----------E~~t~~~i~~~L~~~---G~~v~~~~--~-~tg~~a~~g~g~gp~i~~~a 90 (418) T 1xmb_A 27 FDWMVKIRRKIHENPELGYE----------ELETSKLIRSELELI---GIKYRYPV--A-ITGVIGYIGTGEPPFVALRA 90 (418) T ss_dssp HHHHHHHHHHHHHSCCCTTC----------CHHHHHHHHHHHHHH---TCCEEEEE--T-TTEEEEEEESSSSCEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHHHHC---CCEEEECC--C-CCEEEEEECCCCCCEEEEEE T ss_conf 99999999999847586784----------899999999999987---99689768--8-83799998589998799970 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 40323288776778886354334542135642224203589999988763147-87773689981564336446999999 Q T0607 96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQG-LPYPRCILIIEACEESGSYDLPFYIE 174 (471) Q Consensus 96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~-~~~~~~~~~~~~~EE~G~~g~~~~~~ 174 (471) |||+||..+.+.|++.+.. .+..+ +++..+..++++.+++.+.+.. ...++++++|+++||.+. |+..+++ T Consensus 91 ~~DalP~~e~~~~~~~s~~----~~~~h---acGhd~~~a~~lg~a~~l~~~~~~~~g~v~~if~paEE~~~-G~~~m~~ 162 (418) T 1xmb_A 91 DMDALPIQEGVEWEHKSKI----AGKMH---ACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLS-GAKKMRE 162 (418) T ss_dssp ECCCBSCCCCCCSTTCCSS----TTCBC---CSSHHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTC-HHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCC----CEECC---CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHH T ss_conf 5200223147776656655----51023---44644056889999888876565138537983056520335-5679997 Q ss_pred HHHHHCCCCEEEEECCCCCC-CCCCCEE--EEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 97764289608997687776-8776558--88510236888898644776344567741478999999999997400245 Q T0607 175 LLKERIGKPSLVICLDSGAG-NYEQLWM--TTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTG 251 (471) Q Consensus 175 ~~~~~~~~~d~~~~~~~~~~-~~~~~~i--~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~ 251 (471) . ..+...|+++....... ..+.... .....|...+++++.|.+ +|++. +....|++.++..++..+...... T Consensus 163 ~--g~~~~~d~~~~~h~~~~~~~~~~~~~~g~~~~~~~~~~i~~~Gk~--aHaa~-p~~~~~~i~a~~~~i~~l~~~~~~ 237 (418) T 1xmb_A 163 E--GALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKG--GHAAI-PQHTIDPVVAASSIVLSLQQLVSR 237 (418) T ss_dssp T--TTTTTEEEEEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC------------CCHHHHHHHHHHHHHHTTCBC T ss_pred C--CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC--CCCCC-CCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 6--765588740354202345653431014754111016998604577--76557-865788388999999998650334 Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECC Q ss_conf 02133101444300089999998633455565421110012320010123333221001201302100057851303547 Q T0607 252 EIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRP 331 (471) Q Consensus 252 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~ 331 (471) .. ......+++++.+ .++.+.||||+ T Consensus 238 ~~--------------------------------------------------~~~~~~~i~v~~i----~GG~a~NVIPd 263 (418) T 1xmb_A 238 ET--------------------------------------------------DPLDSKVVTVSKV----NGGNAFNVIPD 263 (418) T ss_dssp CS--------------------------------------------------SGGGCEEEEEEEE----C--------CC T ss_pred CC--------------------------------------------------CCCCCEEEEEEEE----CCCCCCCCCCC T ss_conf 67--------------------------------------------------9875379999997----27875522762 Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE-- Q ss_conf 4899997512787888999999999999732-3663389998315767766899888999999999998369765234-- Q T0607 332 VTSLKLSMRLPPLVDPEAASVAMEKALTQNP-PYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYM-- 408 (471) Q Consensus 332 ~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-- 408 (471) ++++++++|..+.+. ...+++...+.... ......++++.......+..-.+++.+.+.++++.++..|.+.... T Consensus 264 ~a~l~~~iRa~~~~~--~~~~~i~~~~~~~a~a~~~~~~v~~~~~~~~~~p~~~Nd~~l~~~~~~~~~~~~G~~~v~~~~ 341 (418) T 1xmb_A 264 SITIGGTLRAFTGFT--QLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAA 341 (418) T ss_dssp EEEEEEEEEESSCHH--HHHHHHHHHHHHHHHHTTEEEEEESSGGGCCCBCCEEECHHHHHHHHHHHHHHHCGGGEEECC T ss_pred HHEEEEEEEECCHHH--HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 204554410101466--778999998889999845665101013542258754489999999999999861965422289 Q ss_pred -ECCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf -4277655689999861899899968778666---75677760048999999999999999997139 Q T0607 409 -GEGGTIPFMSMLGEQFPKAQFMITGVLGPHS---NAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 409 -~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~---~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) ..|+ .|.+.|+..+|++ .+.+|.+.... ..|+|+-.++-+.+..++++++.+..+|.++| T Consensus 342 p~~gs--eDFg~~~~~vPg~-~~~iG~~~~~~~~~~~Hsp~f~~de~~l~~G~~~~a~~a~~~L~~~ 405 (418) T 1xmb_A 342 PVMGS--EDFSYFAETIPGH-FSLLGMQDETNGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEK 405 (418) T ss_dssp CBCCC--CTHHHHHTTSCEE-EEEEEEECTTCCSCCTTCTTCCCCGGGHHHHHHHHHHHHHHHHHHH T ss_pred CCCCH--HHHHHHHHHHHHH-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97108--8999999974461-8999616999998889999987897999999999999999998635 No 21 >1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Probab=99.97 E-value=1.2e-31 Score=212.63 Aligned_cols=349 Identities=9% Similarity=-0.024 Sum_probs=178.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEEEEE Q ss_conf 99999999999617897988666666654799999999999998354884178975389924899987379-98879997 Q T0607 16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTVLLY 94 (471) Q Consensus 16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i~l~ 94 (471) .|++|++|++|++|||+|++ +++++++|.+||+++ |+++++ +..+||+++++|+ ++|+|+|. T Consensus 6 ~de~l~ll~~Lv~ipS~sg~----------E~~v~~~l~~~l~~~---G~ev~~----D~~GNlia~~~g~~~~p~lll~ 68 (373) T 1vhe_A 6 LDETLTMLKDLTDAKGIPGN----------EREVRQVMKSYIEPF---ADEVTT----DRLGSLIAKKTGAENGPKIMIA 68 (373) T ss_dssp CCHHHHHHHHHHHSCCCTTC----------CHHHHHHHHHHHGGG---CSEEEE----CTTCCEEEEEESSTTSCEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECCCCCCCEEEEE T ss_conf 89999999999749998966----------899999999999974---998999----0785699998379999769999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 34032328877677888635433454213564222420358999998876314787773689981564336446999999 Q T0607 95 GHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIE 174 (471) Q Consensus 95 ~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~ 174 (471) |||||||+ ++....+++++||||+.|||++.+...... .+...+...+.+.+.+..++|.......... T Consensus 69 gH~DtV~~---------~~~~~~~~~~i~g~g~~d~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 137 (373) T 1vhe_A 69 GHLDEVGF---------MVTQITDKGFIRFQTVGGWWAQVMLAQRVT-IVTKKGEITGVIGSKPPHILSPEARKKSVEI- 137 (373) T ss_dssp EECCCCEE---------EEEEECTTSCEEEEEESCCCGGGTTTCEEE-EEETTEEEEEEEECCCGGGSCTTTTTSCCCG- T ss_pred EECCCCCC---------CCCEECCCCEEEEECCCCCCHHHHHHHHHH-HHHCCCCCEEEEEEEEEEECCCCCCCCCHHH- T ss_conf 65586999---------885101487799633666677788778999-9852787202476644330232012331246- Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9776428960899768777687765588851023688889864477-634456774147899999999999740024502 Q T0607 175 LLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINE-GVHSGSASGIVADSFRVARQLISRIEDENTGEI 253 (471) Q Consensus 175 ~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~-~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471) .+............ .........+............. ..+.+ ...........+......+........ T Consensus 138 --------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (373) T 1vhe_A 138 --------KDMFIDIGASSREE-ALEWGVLPGDMIVPHFEFTVMNNEKFLLA-KAWDNRIGCAIAIDVLRNLQNTDHPNI 207 (373) T ss_dssp --------GGCEEECSCSSHHH-HHHTTCCTTCEEEECCCCEECSSTTEEEE-TTHHHHHHHHHHHHHHHHHHTSCCSSE T ss_pred --------HHHHCCCCCCCCCC-CEEEEECCCCCCCCCCCEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf --------66420102333221-10100012332101232156505553323-543110035788999987652046787 Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE Q ss_conf 13310144430008999999863345556542111001232001012333322100120130210005785130354748 Q T0607 254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT 333 (471) Q Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~ 333 (471) ...+...... +.+........++.+..+ T Consensus 208 ~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~ 235 (373) T 1vhe_A 208 VYGVGTVQEE----------------------------------------------------VGLRGAKTAAHTIQPDIA 235 (373) T ss_dssp EEEEEESCCT----------------------------------------------------TTSHHHHHHHHHHCCSEE T ss_pred CEEEEEECCE----------------------------------------------------EECCCCCCEEEEECCHHH T ss_conf 3011222011----------------------------------------------------303434311112110244 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 99997512787888999999999999732366338999831576776689988899999999999836976523442776 Q T0607 334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT 413 (471) Q Consensus 334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt 413 (471) ......+........ .................. ++ . ..++.+.+.+++++++.+.........+| T Consensus 236 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 300 (373) T 1vhe_A 236 FGVDVGIAGDTPGIS--------EKEAQSKMGKGPQIIVYD---AS--M-VSHKGLRDAVVATAEEAGIPYQFDAIAGG- 300 (373) T ss_dssp EEEEEEECCCSTTCC--------TTTCCCCTTSCCEEEEEE---TT--E-ECCHHHHHHHHHHHHHHTCCCEEEEETTC- T ss_pred HHHHHHHHHHHHHHH--------HHCCCCCCCCEEEEECCC---CC--C-CCCHHHHHHHHHHHHHCCCCCCEECCCCC- T ss_conf 434344566665554--------420133322101221024---76--5-68989999999999980999625427983- Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 5568999986189989996877866675677760048999999999999999997139 Q T0607 414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) ++|++.|.....|+|++.+||+. .++|+||||++++++.+.+++|+++|.+|.+|| T Consensus 301 gtDa~~~~~~~~Giptv~~Gpg~--~~~H~~~E~v~i~di~~~~~l~~~~i~~l~~~~ 356 (373) T 1vhe_A 301 GTDSGAIHLTANGVPALSITIAT--RYIHTHAAMLHRDDYENAVKLITEVIKKLDRKT 356 (373) T ss_dssp CCTHHHHTTSTTCCCEEEEEEEE--BSTTSSCEEEEHHHHHHHHHHHHHHHHHCCHHH T ss_pred CCHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH T ss_conf 43899999866999399989364--888785459899999999999999999864987 No 22 >1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Probab=99.97 E-value=2.6e-30 Score=204.33 Aligned_cols=334 Identities=8% Similarity=-0.017 Sum_probs=193.8 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC Q ss_conf 99999996178979886666666547999999999999983548841789753899248999873799887999734032 Q T0607 20 LPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDK 99 (471) Q Consensus 20 i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~Dv 99 (471) |++|++||+|||+|++ |.+++++|++||+++| +++++ +..+||+++++|+++|+|+|.+|||| T Consensus 6 l~ll~~Lv~i~S~sg~----------E~~v~~~l~~~l~~~g---~~v~~----d~~gNvi~~~~g~~~~~l~~~~H~Dt 68 (348) T 1ylo_A 6 LSLLKALSEADAIASS----------EQEVRQILLEEAARLQ---KEVRF----DGLGSVLIRLNESTGPKVMICAHMDE 68 (348) T ss_dssp HHHHHHHHHSCCBTTB----------CHHHHHHHHHHHHHTT---CCEEE----CTTCCEEEECCCCSSCEEEEEEECCC T ss_pred HHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEE----CCCCEEEEEECCCCCCEEEEEECCCC T ss_conf 9999999729995987----------7999999999999739---98999----68962999989999986999962775 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 32887767788863543345421356422242035899999887631478777368998156433644699999997764 Q T0607 100 QPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLKER 179 (471) Q Consensus 100 Vp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~~~ 179 (471) ||.+. ....++|++||+|..|+++++++.. .+.........+...+...|+.+..+.. T Consensus 69 V~~~~---------~~~~~~G~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 126 (348) T 1ylo_A 69 VGFMV---------RSISREGAIDVLPVGNVRMAARQLQ----PVRITTREECKIPGLLDGDRQGNDVSAM--------- 126 (348) T ss_dssp CEEEE---------EEECTTCCEEEEEESCCCGGGSSSE----EEEEECTTCCEEEEEEEEEEETTEEEEE--------- T ss_pred CCCCC---------CEECCCCEEEEECCEEECHHHHCCC----EEEEECCCCCCEEEEEECCCCCCCCCCE--------- T ss_conf 89999---------7464189786742101245454122----1799513575211221001247776552--------- Q ss_pred CCCCEEEEECCCCC-CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 28960899768777-68776558885102368888986447763445677414789999999999974002450213310 Q T0607 180 IGKPSLVICLDSGA-GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQL 258 (471) Q Consensus 180 ~~~~d~~~~~~~~~-~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 258 (471) + +...... ............++....+....+ ...|++.. ....+++..+......+.......... T Consensus 127 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 194 (348) T 1ylo_A 127 -----R-VDIGARTYDEVMQAGIRPGDRVTFDTTFQVLP--HQRVMGKA-FDDRLSCYLLVTLLRELHDAELPAEVW--- 194 (348) T ss_dssp -----E-EECSCCSHHHHHHTTCCTTCEEEECCCCEEET--TTEEEETT-HHHHHHHHHHHHHHHHHTTCCCSSEEE--- T ss_pred -----E-EEECCCCCCCCCCCCCCCCCCEEECCEEEEEC--CCCEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCE--- T ss_conf -----5-76223333234211102443204302025651--43301222-346430467777789876224566604--- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEE Q ss_conf 14443000899999986334555654211100123200101233332210012013021000578513035474899997 Q T0607 259 YCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLS 338 (471) Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d 338 (471) ...+.....+........+.++..+...++ T Consensus 195 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (348) T 1ylo_A 195 --------------------------------------------------LVASSSEEVGLRGGQTATRAVSPDVAIVLD 224 (348) T ss_dssp --------------------------------------------------EEEESCCTTSSHHHHHHHHHHCCSEEEEEC T ss_pred --------------------------------------------------EECCCCCCCCCEEECCCCCCCCCCCCCCCC T ss_conf --------------------------------------------------300000013541100010344310121211 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHH Q ss_conf 51278788899999999999973236633899983157677668998889999999999983697652344277655689 Q T0607 339 MRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMS 418 (471) Q Consensus 339 ~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~ 418 (471) ++.......... ... ............ .. + ...++.+.+....+.++.+..+......+| ++|++ T Consensus 225 ~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gtDa~ 289 (348) T 1ylo_A 225 TACWAKNFDYGA-------ANH-RQIGNGPMLVLS--DK-S---LIAPPKLTAWIETVAAEIGVPLQADMFSNG-GTDGG 289 (348) T ss_dssp CCCCSSTTCCST-------TCC-CCTTSCCEEEEE--CS-S---CBCCHHHHHHHHHHHHHHTCCCEEEECSSC-CCHHH T ss_pred CCCCCCCCHHHH-------HHH-HHCCCCCEEEEC--CC-C---CCCCCHHHCCCHHHHHHHCCCCEEEECCCC-CCHHH T ss_conf 100455310567-------754-320232202321--67-6---667803311201479983999417857887-52489 Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99986189989996877866675677760048999999999999999997139 Q T0607 419 MLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 419 ~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) .|.....|+|++.||||. .++|++|||++++++.+.+++|..+|.+|.++| T Consensus 290 ~~~~~~~Giptv~~Gpg~--~~~Ht~~E~v~i~~l~~~~~~l~~~i~~L~~~~ 340 (348) T 1ylo_A 290 AVHLTGTGVPTLVMGPAT--RHGHCAASIADCRDILQMEQLLSALIQRLTRET 340 (348) T ss_dssp HHHTSTTCCCEEEEECCC--BSCSSSCEEEEHHHHHHHHHHHHHHHHTCCHHH T ss_pred HHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHHCHHH T ss_conf 999847999899989583--778771269889999999999999999869999 No 23 >1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Probab=99.96 E-value=1.8e-30 Score=205.40 Aligned_cols=342 Identities=10% Similarity=-0.042 Sum_probs=167.7 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC Q ss_conf 99999996178979886666666547999999999999983548841789753899248999873799887999734032 Q T0607 20 LPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDK 99 (471) Q Consensus 20 i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~Dv 99 (471) +++|++||+|||+|+.+. +.+++++.+||+++ |+++++ +..+||+++++| +.|.|+|.||||| T Consensus 9 ~~lL~~Lv~ipSpsg~E~---------~~v~~~l~~~l~~~---g~~v~~----D~~gNlia~~~g-~~p~i~l~aH~DT 71 (353) T 1y0y_A 9 YELLKKVVEAPGVSGYEF---------LGIRDVVIEEIKDY---VDEVKV----DKLGNVIAHKKG-EGPKVMIAAHMDQ 71 (353) T ss_dssp HHHHHHHHHSCCBTTCGG---------GTHHHHHHHHHGGG---SSEEEE----CTTCCEEEEECC-SSCEEEEEEECCB T ss_pred HHHHHHHHCCCCCCCCHH---------HHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECC-CCCEEEEEECCCC T ss_conf 999999974999596416---------99999999999970---996999----378429999789-9975999966886 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE--EEEECCCCCCCHHHHHHHHHHH Q ss_conf 32887767788863543345421356422242035899999887631478777368--9981564336446999999977 Q T0607 100 QPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCI--LIIEACEESGSYDLPFYIELLK 177 (471) Q Consensus 100 Vp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~--~~~~~~EE~G~~g~~~~~~~~~ 177 (471) ||... ++.....++++||||+.|||+++++++.++. ..+....... +.+...++.+..+. T Consensus 72 V~~~~-------~~~~~~~~~~~~g~G~~d~k~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 133 (353) T 1y0y_A 72 IGLMV-------THIEKNGFLRVAPIGGVDPKTLIAQRFKVWI---DKGKFIYGVGASVPPHIQKPEDRKKA-------- 133 (353) T ss_dssp CEEEE-------EEECTTSCEEEEEESSCCGGGTTTCEEEEEE---ETTEEEEEEEEC-------------C-------- T ss_pred CCCCC-------CCCCCCCCEEEEECCCCCCCHHHHHHHHHHH---HCCCCCCCEEEEEEEEEECCCCCCCC-------- T ss_conf 99888-------9756555347850265465323788888766---24873377368876555303100133-------- Q ss_pred HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 64289608997687776877655888510236888898644776344567741478999999999997400245021331 Q T0607 178 ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQ 257 (471) Q Consensus 178 ~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 257 (471) ... ....+...................++.........+... |+. ......+++......+..+........ T Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 205 (353) T 1y0y_A 134 PDW-DQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHR--FVS-IAFDDRIAVYTILEVAKQLKDAKADVY---- 205 (353) T ss_dssp CCG-GGCEEECSCSSHHHHHHTTCCTTCEEEECCCCEEETTTE--EEE-TTHHHHHHHHHHHHHHHHCCSCSSEEE---- T ss_pred CCH-HHHHHHCCCCCCCCCEECCEEECCCCCEEEEEEEEEECC--CCC-CHHHHHHHHHHHHHHHHHHCCCCCCCC---- T ss_conf 213-455431366652000013401011220122346532011--114-244421236778887664202467643---- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEE Q ss_conf 01444300089999998633455565421110012320010123333221001201302100057851303547489999 Q T0607 258 LYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKL 337 (471) Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~ 337 (471) ...++....+........+..+....... T Consensus 206 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (353) T 1y0y_A 206 ---------------------------------------------------FVATVQEEVGLRGARTSAFGIEPDYGFAI 234 (353) T ss_dssp ---------------------------------------------------EEEESCCTTTSHHHHHHHHHHCCSEEEEE T ss_pred ---------------------------------------------------CCCCEEEEEECCCCCCCCCCCCCCHHHEE T ss_conf ---------------------------------------------------11311346511222222334565311112 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH Q ss_conf 75127878889999999999997323663389998315767766899888999999999998369765234427765568 Q T0607 338 SMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFM 417 (471) Q Consensus 338 d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~ 417 (471) ..+.......... ............+..... . .+ .++.+.+.++++++.....+......+| ++|+ T Consensus 235 ~~~~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gsD~ 300 (353) T 1y0y_A 235 DVTIAADIPGTPE-------HKQVTHLGKGTAIKIMDR-S----VI-CHPTIVRWLEELAKKHEIPYQLEILLGG-GTDA 300 (353) T ss_dssp EEEECCCSTTCCG-------GGCCCCTTSCEEEEEEET-T----EE-CCHHHHHHHHHHHHHTTCCEEEEECSSC-CCTH T ss_pred EEEECCCCCCCHH-------HHHHHHHCCCCCCEECCC-C----CC-CCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHH T ss_conf 1000344100024-------555566503654121257-6----54-6757766789999982999438847885-4528 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999986189989996877866675677760048999999999999999997139 Q T0607 418 SMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 418 ~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) +.|.....|+|++.+||+.. ++|++|||++++++.+.+++|.++|.+|-+.| T Consensus 301 ~~~~~~~~Gip~v~~G~g~~--~~Ht~~E~v~i~d~~~~~~ll~~~l~~l~~~~ 352 (353) T 1y0y_A 301 GAIHLTKAGVPTGALSVPAR--YIHSNTEVVDERDVDATVELMTKALENIHELK 352 (353) T ss_dssp HHHTTSTTCCCEEEEEEEEB--SCSSSCEEEEHHHHHHHHHHHHHHHHHGGGCC T ss_pred HHHHHHCCCCCEEEECCCCC--CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99997469997899823707--78660249899999999999999998546321 No 24 >2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Probab=99.96 E-value=1.4e-29 Score=199.74 Aligned_cols=341 Identities=14% Similarity=0.001 Sum_probs=185.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEE Q ss_conf 98899999999999617897988666666654799999999999998354884178975389924899987379-98879 Q T0607 13 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTV 91 (471) Q Consensus 13 ~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i 91 (471) .++.+++|++|++||+|||+|++ +.+++++|++||+++ |+++++ +..+||++.++|+ +.|+| T Consensus 2 ~~~~~e~i~ll~~Lv~i~S~sg~----------E~~v~~~l~~~l~~~---G~~v~~----d~~gNvi~~~~g~~~~~~i 64 (349) T 2gre_A 2 AHHTKETMELIKELVSIPSPSGN----------TAKIINFIENYVSEW---NVETKR----NNKGALILTVKGKNDAQHR 64 (349) T ss_dssp -CHHHHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHTTTS---SSEEEE----CSSSCEEEEECCSEEEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----ECCCCEEEEECCCCCCCEE T ss_conf 50079999999999649998968----------999999999999975---987999----7688399998678999759 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH Q ss_conf 99734032328877677888635433454213564222420358999998876314787773689981564336446999 Q T0607 92 LLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPF 171 (471) Q Consensus 92 ~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~ 171 (471) +|++||||||. ..+||. ...+.++||||+.|||+++++++.+......... +...+++...++....+... T Consensus 65 ll~~H~Dtv~~------~~~~~~-~~g~~~~~g~G~~d~k~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 135 (349) T 2gre_A 65 LLTAHVDTLGA------MVKEIK-PDGRLSLSMIGGFRWNSVEGEYCEIETSSGKTYT--GTILMHQTSVHVYKDAGEAK 135 (349) T ss_dssp EEEEECCBCEE------EEEEEC-TTSCEEEEEESSCCGGGTTTCEEEEECTTSCEEE--EEEECC-------------- T ss_pred EEEECCCCCCC------CCCCCC-CCCCEEEECCCCCCCCCCCHHEEEEEECCCCCCC--CCEEEEEEEEECCCCCCCCC T ss_conf 99963567887------789805-2687788746662566551017875500475567--86014776344032223442 Q ss_pred HHHHHHHHCCCCEEEEECCCCC-CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999776428960899768777-687765588851023688889864477634456774147899999999999740024 Q T0607 172 YIELLKERIGKPSLVICLDSGA-GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENT 250 (471) Q Consensus 172 ~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (471) ... ...+......... .+.....+..+.++..+..++..+ ...|++... ...+++......+..+..... T Consensus 136 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 206 (349) T 2gre_A 136 RDE------KNIEVRIDERVFSADEVRELGIEVGDFVSFDPRVQITE--SGYIKSRHL-DDKVSVAILLKLIKRLQDENV 206 (349) T ss_dssp -----------CEEEESSCCCSHHHHHHTTCCTTCEEEECCCCEECT--TSEEEESCC-TTHHHHHHHHHHHHHHHHHTC T ss_pred CHH------HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC--CCCEECCCC-CCCCCHHHHHHHHHHHHHHCC T ss_conf 126------67763456550121000145522322899966899812--341212431-362415899999999776324 Q ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEEC Q ss_conf 50213310144430008999999863345556542111001232001012333322100120130210005785130354 Q T0607 251 GEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMR 330 (471) Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip 330 (471) ..... .....+..... ......+++ T Consensus 207 ~~~~~---------------------------------------------------~~~~~~~~~~~----~~~~~~~~~ 231 (349) T 2gre_A 207 TLPYT---------------------------------------------------THFLISNNEEI----GYGGNSNIP 231 (349) T ss_dssp CCSEE---------------------------------------------------EEEEEESCC--------CCCCCCC T ss_pred CCCCC---------------------------------------------------CCCCCEEEEEE----EEECCCCCC T ss_conf 77764---------------------------------------------------21342367887----420445456 Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEC Q ss_conf 74899997512787888999999999999732366338999831576776689988899999999999836976523442 Q T0607 331 PVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGE 410 (471) Q Consensus 331 ~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 410 (471) ........++.......... ....+.+.... ...+. +..+.+.+..+.++.+......... T Consensus 232 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349) T 2gre_A 232 EETVEYLAVDMGALGDGQAS-------------DEYTVSICAKD-----SSGPY-HYALRKHLVELAKTNHIEYKVDIYP 292 (349) T ss_dssp TTEEEEEEECCCCCSCC--C-------------CTTSEEEEEEE-----TTEEC-CHHHHHHHHHHHHHHTCCEEEEECS T ss_pred CCCHHHHHHHHHHCCCCCCC-------------CCCEEEEEECC-----CCCCC-CCHHHHHHHHHHHHCCCCCCEEECC T ss_conf 77515555320101467766-------------44405777404-----65554-6202456899999839994067478 Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 77655689999861899899968778666756777600489999999999999999 Q T0607 411 GGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYS 466 (471) Q Consensus 411 gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~ 466 (471) +| ++|++.|.....|+|++.+||+. .++|++ |+++++++.+.+++|..+|.+ T Consensus 293 ~g-gtD~~~~~~~~~Gip~v~~G~g~--~~~Ht~-E~v~i~~i~~~~~~l~~~l~~ 344 (349) T 2gre_A 293 YY-GSDASAAIRAGFDVKHALIGAGI--DSSHAF-ERTHESSIAHTEALVYAYVMS 344 (349) T ss_dssp CC---------CCSSSCEEEEEEECC--BSTTSS-EEEEHHHHHHHHHHHHHHHHS T ss_pred CC-CCHHHHHHHHCCCCCEEEECCCC--CCCCCC-EEEEHHHHHHHHHHHHHHHHH T ss_conf 70-05479999848999899989272--677469-898899999999999999961 No 25 >3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} Probab=99.96 E-value=6.9e-30 Score=201.74 Aligned_cols=335 Identities=11% Similarity=-0.028 Sum_probs=183.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCC Q ss_conf 99999988999999999996178979886666666547999999999999983548841789753899248999873799 Q T0607 8 YDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQI 87 (471) Q Consensus 8 ~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~ 87 (471) .||+ ..+...|.++|++||+|||+|++ |++++++|.+||+++ |+++++ +..+||+++.++ + T Consensus 3 ~~~~-~~~~~~m~elL~~Lv~ipSpSG~----------E~~~~~~i~~~l~~~---g~~v~~----D~~gNlia~~~~-~ 63 (343) T 3isx_A 3 SDKI-HHHHHHMKELIRKLTEAFGPSGR----------EEEVRSIILEELEGH---IDGHRI----DGLGNLIVWKGS-G 63 (343) T ss_dssp -------CCSCCHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHTTT---CSEEEE----CTTCCEEEEECC-C T ss_pred CCHH-HHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----CCCCEEEEEECC-C T ss_conf 5213-21168999999999629996986----------899999999999970---998999----588449999389-9 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH Q ss_conf 88799973403232887767788863543345421356422242035899999887631478777368998156433644 Q T0607 88 DDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSY 167 (471) Q Consensus 88 ~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~ 167 (471) +|+|+|.+|+||||.. +++.+.+|||..|+||++.+...+...+......... ...+...++.... T Consensus 64 ~p~vll~aH~DTV~~~-------------~~~~~~~G~~~~~~~Gg~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~e 129 (343) T 3isx_A 64 EKKVILDAHIDEIGVV-------------VTNVDDKGFLTIEPVGGVSPYMLLGKRIRFENGTIGV-VGMEGETTEERQE 129 (343) T ss_dssp SSEEEEEEECCBCEEE-------------EEEECTTSCEEEEEESSCCHHHHTTCEEEETTSCEEE-EEECCCSHHHHHH T ss_pred CCEEEEEECCCCCCCC-------------CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC-EEEEEEEECCCCC T ss_conf 9759999557887982-------------8854668999998364599999999999971598663-0114346144454 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC-----CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 69999999776428960899768777-----6877655888510236888898644776344567741478999999999 Q T0607 168 DLPFYIELLKERIGKPSLVICLDSGA-----GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLI 242 (471) Q Consensus 168 g~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~ 242 (471) +... .....+.+...... ............++......+++|... | ...++.++..++ T Consensus 130 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~-------~~~g~~al~~~~ 192 (343) T 3isx_A 130 NVRK--------LSFDKLFIDIGANSREEAQKMCPIGSFGVYDSGFVEVSGKYVSKAM--D-------DRIGCAVIVEVF 192 (343) T ss_dssp HHHT--------CCGGGEEEECSCSSHHHHHHHSCTTCEEEESCCCEEETTEEEESCH--H-------HHHHHHHHHHHH T ss_pred CCCC--------CCHHHHEECCCCCCHHHHHCCCCCCCEEEECCCEEEEECEEEECCC--C-------CHHHHHHHHHHH T ss_conf 5565--------3555650102757678873357778479963726998442986467--7-------787899999999 Q ss_pred HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCC Q ss_conf 99740024502133101444300089999998633455565421110012320010123333221001201302100057 Q T0607 243 SRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAI 322 (471) Q Consensus 243 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~ 322 (471) ..+...... ....++....+...+ T Consensus 193 ~~l~~~~~~--------------------------------------------------------~~~~~~~~~~g~~~~ 216 (343) T 3isx_A 193 KRIKPAVTL--------------------------------------------------------YGVFSVQEEVGLVGA 216 (343) T ss_dssp HHCCCSSEE--------------------------------------------------------EEEEECCCCTTSCCS T ss_pred HHHCCCCCE--------------------------------------------------------EEECCCCEEECEEEE T ss_conf 963604757--------------------------------------------------------981665378442743 Q ss_pred CCCCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 85130354748999975127878889999999999997323663389998315767766899888999999999998369 Q T0607 323 ADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYD 402 (471) Q Consensus 323 ~~~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 402 (471) ++..|.++..+....+.|......... .+..........++... .. +..++.+...+.+++++.+. T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~~ 282 (343) T 3isx_A 217 SVAGYGVPADEAIAIDVTDSADTPKAI--------KRHAMRLSGGPALKVKD-RA-----SISSKRILENLIEIAEKFDI 282 (343) T ss_dssp TTTGGGCCCSEEEEEEEEECCCSTTCC--------CTTCCCTTSCCEEECBT-TC-----CHHHHHHHHHHHHHHHHTTC T ss_pred EEECCCCCCHHEEEEEEEECCCCCCCH--------HHHHHHHCCCEEEEECC-CC-----CCCCHHHHHHHHHHHHHCCC T ss_conf 210245685001122037615774535--------77777535844999746-88-----87887899999999998199 Q ss_pred CCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 765234427765568999986189989996877866675677760048999999999999999 Q T0607 403 KPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLY 465 (471) Q Consensus 403 ~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~ 465 (471) ........+| ++|++.|.....|+|++.+||+. .++|++||+++++++.+.+++|.++|. T Consensus 283 ~~~~~~~~~g-gTDa~~~~~~~~Giptv~~Gpg~--~~aHt~~E~v~i~dl~~~~~ll~~~L~ 342 (343) T 3isx_A 283 KYQMEVLTFG-GTNAMGYQRTREGIPSATVSIPT--RYVHSPSEMIAPDDVEATVDLLIRYLG 342 (343) T ss_dssp CCEECCCBCC-CSSHHHHHHHTSSCCEEEEEEEE--BSTTSTTEEECHHHHHHHHHHHHHHHC T ss_pred CCEEEECCCE-EEHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHC T ss_conf 9558617872-06789999847999899989263--777750208999999999999999975 No 26 >3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, substrate specificity, metallopeptidase M42, hydrolase; 2.70A {Streptococcus pneumoniae R6} Probab=99.96 E-value=8.4e-30 Score=201.19 Aligned_cols=342 Identities=9% Similarity=-0.061 Sum_probs=181.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC--CCCEEEEE Q ss_conf 9999999999617897988666666654799999999999998354884178975389924899987379--98879997 Q T0607 17 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ--IDDTVLLY 94 (471) Q Consensus 17 ~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~--~~~~i~l~ 94 (471) .+++++|++||+|||+|++ |.+++++|++||+++| +++++ +..+||++.++|+ ++|+|+|. T Consensus 3 ~~l~~~L~eLv~IpS~Sg~----------E~~~~~~i~~~l~~~G---~~v~~----D~~GNvi~~~~g~~~~~p~l~l~ 65 (355) T 3kl9_A 3 TTLFSKIKEVTELAAVSGH----------EAPVRAYLREKLTPHV---DEVVT----DGLGGIFGIKHSEAVDAPRVLVA 65 (355) T ss_dssp HHHHHHHHHHHTSCCBTTC----------CHHHHHHHHHHHGGGS---SEEEE----CTTSCEEEEECCCSTTCCEEEEE T ss_pred HHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEE----ECCCCEEEEECCCCCCCCEEEEE T ss_conf 7999999999819998988----------7999999999999729---98999----57865899977888999869998 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH Q ss_conf 34032328877677888635433454213564222420358999998876314787773689981564336446999999 Q T0607 95 GHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIE 174 (471) Q Consensus 95 ~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~ 174 (471) |||||||... +|+. ....++++|+|..|+|+...+++.++....+...............+|.+.... .+ T Consensus 66 ~H~DTV~~~v------~~~~-~~~~~~~~~~G~~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 135 (355) T 3kl9_A 66 SHMDEVGFMV------SEIK-PDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVISGSVPPHLTRGKGGPTMP-AI-- 135 (355) T ss_dssp EECCBCEEEE------EEEC-TTSCEEEEEESCCCTTTCSSCEEEEECTTSCEEEEEEC---------------C-CG-- T ss_pred CCCCCCCCCC------CCCC-CCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCH-HH-- T ss_conf 5667699888------8736-576156503552536556442999986326434442032343442033445421-13-- Q ss_pred HHHHHCCCCEEEEECCCCC-CCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9776428960899768777-687765588851023688889864477634456774147899999999999740024502 Q T0607 175 LLKERIGKPSLVICLDSGA-GNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEI 253 (471) Q Consensus 175 ~~~~~~~~~d~~~~~~~~~-~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (471) ... ........ .......+..+..+.......+.+. ..|.+..+....+++..+.+++..+........ T Consensus 136 --~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (355) T 3kl9_A 136 --ADI------VFDGGFADKAEAESFGIRPGDTIVPDSSAILTAN--EKNIISKAWDNRYGVLMVSELAEALSGQKLGNE 205 (355) T ss_dssp --GGS------CEECCCSSHHHHHHTTCCTTCEEEECCCCEECTT--SSEEEESCHHHHHHHHHHHHHHHHHSSCCCSSE T ss_pred --HHH------HHCCCCCCHHHHCCCCCEEEEEEEEEEEEEEECC--CCEEECCHHCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf --332------1000232022200466023157775200377413--325741410141556554899999974447872 Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEE Q ss_conf 13310144430008999999863345556542111001232001012333322100120130210005785130354748 Q T0607 254 KLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVT 333 (471) Q Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~ 333 (471) ................. .......++.+ T Consensus 206 ~~~~~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~ 233 (355) T 3kl9_A 206 LYLGSNVQEEVGLRGAH----------------------------------------------------TSTTKFDPEVF 233 (355) T ss_dssp EEEEEESCCTTTSHHHH----------------------------------------------------HHHHHHCCSEE T ss_pred EEEECCEEEEEEECCCC----------------------------------------------------EEEECCCHHHH T ss_conf 37623236875202431----------------------------------------------------00000131555 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 99997512787888999999999999732366338999831576776689988899999999999836976523442776 Q T0607 334 SLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGT 413 (471) Q Consensus 334 ~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt 413 (471) . ....+...... ... ........+.... .. ...++.+.+.+..+++..+.........|| T Consensus 234 ~-~~~~~~~~~~~-----------~~~-~~~~~~~~i~~~~-----~~-~~~d~~l~~~~~~~~~~~g~~~~~~~~~gg- 293 (355) T 3kl9_A 234 L-AVDCSPAGDVY-----------GGQ-GKIGDGTLIRFYD-----PG-HLLLPGMKDFLLTTAEEAGIKYQYYCGKGG- 293 (355) T ss_dssp E-EEEEEECCGGG-----------TSS-CCTTSCEEEEEEE-----TT-EECCHHHHHHHHHHHHHTTCCEEEEECSSC- T ss_pred H-HHHHHHHHHHH-----------HCC-CCCCCCEEEEECC-----CC-CCCCHHHHHHHHHHHHHHCCCCEEECCCCC- T ss_conf 4-44555431012-----------111-2235532553037-----66-668989999999999984999689737877- Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 556899998618998999687786667567776004899999999999999999713 Q T0607 414 IPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 414 ~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~ 470 (471) +|++.|.....|+|++.+|||. .++|++|||++++++.+.+++|.++|.+|-++ T Consensus 294 -tDa~~~~~~~~Giptv~~Gpg~--~~~Ht~~E~i~~~~l~~~~~~l~~~i~~l~~~ 347 (355) T 3kl9_A 294 -TDAGAAHLKNGGVPSTTIGVCA--RYIHSHQTLYAMDDFLEAQAFLQALVKKLDRS 347 (355) T ss_dssp -CTHHHHTTSTTCCCEEEEEEEE--BSCSSSCEEEEHHHHHHHHHHHHHHHHTCCHH T ss_pred -CHHHHHHHHCCCCCEEEECCCC--CCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHH T ss_conf -0689999866999899983164--78865563888999999999999999987288 No 27 >1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Probab=99.96 E-value=1.5e-29 Score=199.72 Aligned_cols=334 Identities=9% Similarity=-0.044 Sum_probs=176.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEC Q ss_conf 99999999999617897988666666654799999999999998354884178975389924899987379988799973 Q T0607 16 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYG 95 (471) Q Consensus 16 ~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~ 95 (471) +.+.+++|++||+|||+|++ |.+++++|.+||+++ |+++++ +..+||+++++|++.|+|+|++ T Consensus 4 k~~~~~lL~~Li~I~S~sg~----------E~~v~~~l~~~L~~~---g~ev~~----d~~gNlia~~~g~~~p~ll~~~ 66 (346) T 1vho_A 4 KMETGKLLMELSNLDGPSGY----------ETNVVSYIKSVIEPF---VDEAKT----TRHGSLIGYKKGKGIGKLAFFA 66 (346) T ss_dssp -CCHHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHGGG---CSEEEE----CTTSCEEEEECCSSSCEEEEEE T ss_pred CHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHC---CCEEEE----ECCCEEEEEECCCCCCCEEEEE T ss_conf 47999999999639996964----------899999999999975---998999----3697399998888997389997 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH Q ss_conf 40323288776778886354334542135642224203589999988763147877736899815643364469999999 Q T0607 96 HLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIEL 175 (471) Q Consensus 96 H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~ 175 (471) |+|||| |+...++|+++||+|..|++.....+..+. .+.+.+..+....+.. ..++.+ .... T Consensus 67 H~DTv~----------~~~~~i~dg~~~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~---~~~~--- 128 (346) T 1vho_A 67 HVDEIG----------FVVSKVEGQFARLEPVGGVDPKVVYASKVR-IYTKNGIERGVIGMLA-PHLQDS---ESRK--- 128 (346) T ss_dssp ECCBCC----------EEEEEEETTEEEEEEC--------CCCEEE-EEETTEEEEEETTCCC-SCCCCH---HHHH--- T ss_pred CCCCCC----------CCCCEEECCCEEECCCCCCCCCCCCEEEEE-EECCCCCEEEEEEEEE-EECCCC---CCCC--- T ss_conf 157789----------979768699343115446574452100688-4124895403789963-320343---2123--- Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 77642896089976877768776558885102368888986447763445677414789999999999974002450213 Q T0607 176 LKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKL 255 (471) Q Consensus 176 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 255 (471) .................. ....++.......+.+. ..|++. +....+++..+..++..+.......... T Consensus 129 --~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (346) T 1vho_A 129 --KVPTYDEIFVDLSLCERG------VRVGDIAVIDQTAFETN--GKVVGK-ALDNRASCGVLVKVLEFLKRYDHPWDVY 197 (346) T ss_dssp --TSCCTTCCEEEGGGSSSC------CCTTCEEEECCCCEEET--TEEEET-THHHHHHHHHHHHHHHHHTTCCCSSEEE T ss_pred --CCCCCCCCEEECCCCCEE------EECCCEEEEEEEEEEEC--CEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf --343200011210233103------41241035557899703--748862-3214234788999999987336677742 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEE Q ss_conf 31014443000899999986334555654211100123200101233332210012013021000578513035474899 Q T0607 256 PQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSL 335 (471) Q Consensus 256 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~ 335 (471) . ..++..+ .++...+.++..+.. T Consensus 198 ~-----------------------------------------------------~~~~~~~----~~~~~~~~~~~~~~~ 220 (346) T 1vho_A 198 V-----------------------------------------------------VFSVQEE----TGCLGALTGAYEINP 220 (346) T ss_dssp E-----------------------------------------------------EEECTTS----SSHHHHHHTTCCCCC T ss_pred C-----------------------------------------------------CCEEEEE----CCCCCCCEEEEEEEE T ss_conf 0-----------------------------------------------------0002210----267677421024330 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEECCCCH Q ss_conf 997512787888999999999999732366338999831576776689988899999999999836-9765234427765 Q T0607 336 KLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYY-DKPAAYMGEGGTI 414 (471) Q Consensus 336 ~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~gGt~ 414 (471) .++.|+.+....+.... ........... .... ..++.....+........ .........+ ++ T Consensus 221 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-gg 283 (346) T 1vho_A 221 DAAIVMDVTFASEPPFS-------DHIELGKGPVI------GLGP---VVDRNLVQKIIEIAKKHNVSLQEEAVGGR-SG 283 (346) T ss_dssp SEEEEEEEECCCCTTSC-------CCCCTTSCCEE------ECST---TSCHHHHHHHHHHHHHTTCCCEEESSCCC--- T ss_pred ECCCCCCCCCCCCCCCC-------CCCCCCCCCCC------CCCC---CCCCHHHHHHHHHHHHHCCCCCEEEEECC-CC T ss_conf 00100134335665444-------33201101211------2454---34420355665556864788763686288-67 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 568999986189989996877866675677760048999999999999999997139 Q T0607 415 PFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQKK 471 (471) Q Consensus 415 ~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~~~ 471 (471) +|++.+.....|+|++.+||+. .++|++|||++++++.+.+++|..++.+|.+++ T Consensus 284 tDa~~~~~~~~Giptv~~G~g~--~~~Ht~~E~v~i~di~~~~~ll~~~i~~l~~e~ 338 (346) T 1vho_A 284 TETDFVQLVRNGVRTSLISIPL--KYMHTPVEMVDPRDVEELARLLSLVAVELEVEG 338 (346) T ss_dssp --CTTHHHHHTTCEEEEEEEEC--BSTTSTTEEECHHHHHHHHHHHHHHHHHCC--- T ss_pred CHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8789999747999299988052--788712269999999999999999999975466 No 28 >3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structural genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Probab=99.94 E-value=2.3e-28 Score=192.31 Aligned_cols=314 Identities=11% Similarity=-0.009 Sum_probs=172.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECC Q ss_conf 99999999889999999999961789798866666665479999999999999835488417897538992489998737 Q T0607 6 GLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPG 85 (471) Q Consensus 6 ~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g 85 (471) +...|+ |+.+++.|++|++||+|||+|++ |..++++|.+||+++|.+....+.....+..+|+++..++ T Consensus 7 ~~~~~~-e~~~~e~iell~~Lv~i~S~sg~----------E~~i~~~i~~~L~~~G~~~~~~~~~~~~~~~~nvia~~~~ 75 (321) T 3cpx_A 7 HHHHHH-ENLYFQGMQLLKELCSIHAPSGN----------EEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG 75 (321) T ss_dssp -------CGGGCCHHHHHHHHHHSCCBTTC----------CHHHHHHHHHHHHHHGGGSSSCCEEECSGGGTTCEEEEES T ss_pred CCCCCH-HHHHHHHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCC T ss_conf 233115-56659999999999749997988----------8999999999999669978993033334762459996289 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC-C Q ss_conf 998879997340323288776778886354334542135642224203589999988763147877736899815643-3 Q T0607 86 QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEE-S 164 (471) Q Consensus 86 ~~~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE-~ 164 (471) .|.|+|.+||||||.+....|.. +++|+.|||++.+.+ +.+.++| . T Consensus 76 --~~~vl~~gH~Dtv~~~~~~~~~~------------~~~g~~d~k~~~~~~-------------------v~~~~~~~~ 122 (321) T 3cpx_A 76 --NPRTAVFAHMDSIGFTVSYNNHL------------HPIGSPSAKEGYRLV-------------------GKDSNGDIE 122 (321) T ss_dssp --SCSEEEEEECCBCEEEECSTTBE------------EEESSCCCCTTCEEE-------------------EEETTEEEE T ss_pred --CCEEEEEECCCCCCCCCCCCCCC------------CCCCCHHHHCCEEEE-------------------EEECCCCCC T ss_conf --86399971256668741210356------------764654132060899-------------------994687434 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 64469999999776428960899768777687765588851023688889864477634456774147899999999999 Q T0607 165 GSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISR 244 (471) Q Consensus 165 G~~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~ 244 (471) +..+... ... ..+....+.+|+.+.+...+...| +..|+... ...+++..+..++.. T Consensus 123 ~~~~~~~-----------~~~--------~~~~~~~~~iG~~~~~~~~~~~~g--~~~~~~~~--~~~~~~~~~~~ai~~ 179 (321) T 3cpx_A 123 GVLKIVD-----------EEW--------MLETDRLIDRGTEVTFKPDFREEG--DFILTPYL--DDRLGVWTALELAKT 179 (321) T ss_dssp EEEECGG-----------GSC--------EEECSSCCCTTCEEEECCCCEEET--TEEECTTH--HHHHHHHHHHHHTTT T ss_pred CCCCCCC-----------CCC--------CCHHHHCCCCCCEEEECCEEEEEC--CEEEEEEC--CCCCCHHHHHHHHHH T ss_conf 6554554-----------111--------661541757783797302299989--99987506--676579999999987 Q ss_pred HHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCC Q ss_conf 74002450213310144430008999999863345556542111001232001012333322100120130210005785 Q T0607 245 IEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIAD 324 (471) Q Consensus 245 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~ 324 (471) +.... . ..++..+ .++. T Consensus 180 l~~~~---~--------------------------------------------------------~~~~~~~----~g~~ 196 (321) T 3cpx_A 180 LEHGI---I--------------------------------------------------------AFTCWEE----HGGG 196 (321) T ss_dssp CCSEE---E--------------------------------------------------------EEESSTT----TTCC T ss_pred CCCCC---E--------------------------------------------------------EEEEEEE----ECCC T ss_conf 05066---8--------------------------------------------------------8662288----6550 Q ss_pred CCCEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 13035474899997512787888999999999999732366338999831576776689988899999999999836976 Q T0607 325 AGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKP 404 (471) Q Consensus 325 ~~nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 404 (471) ..|++|..+...+++|..+..+..... ........ ...... .. ...++.+.+.++...++..... T Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~ 261 (321) T 3cpx_A 197 SVAYLARWIYETFHVKQSLICDITWVT-------EGVEAGKG--VAISMR---DR---MIPRKKYVNRIIELARQTDIPF 261 (321) T ss_dssp SHHHHHHHHHHHHCCCEEEECCCEECC-------SSSCTTSC--EEEEEE---SS---SCCCHHHHHHHHHHHTTSSCCE T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCC-------CCCCCCCC--EEEECC---CC---CCCCHHHHHHHHHHHHHHCCCC T ss_conf 032145421334015678631576443-------22211341--366305---77---6689899999999998608984 Q ss_pred CCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 523442776556899998618998999687786667567776004899999999999999999 Q T0607 405 AAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF 467 (471) Q Consensus 405 ~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l 467 (471) ......+| ++|++.|.....|+|++.+|||. .++|++|||++++++.+.+++|..+|.+| T Consensus 262 ~~~v~~~g-gTDa~~~~~~~~gip~v~~Gpg~--~~~Ht~~E~v~i~dl~~~~~i~~~~i~~L 321 (321) T 3cpx_A 262 QLEVEGAG-ASDGRELQLSPYPWDWCFIGAPE--KDAHTPNECVHKKDIESMVGLYKYLMEKL 321 (321) T ss_dssp EEEECSSC-CCHHHHHHHSSSCCBCCBEECEE--BSTTSTTCEEEHHHHHHHHHHHHHHHHHC T ss_pred EEEECCCC-CCHHHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHC T ss_conf 37757997-66899999857999899989372--77863337999999999999999999639 No 29 >2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} SCOP: b.49.3.1 c.56.5.4 Probab=99.94 E-value=6.4e-28 Score=189.56 Aligned_cols=327 Identities=10% Similarity=-0.011 Sum_probs=162.0 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCC-CCCEEEEECCCCCC Q ss_conf 99999617897988666666654799999999999998354884178975389924899987379-98879997340323 Q T0607 22 SLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ-IDDTVLLYGHLDKQ 100 (471) Q Consensus 22 ~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~-~~~~i~l~~H~DvV 100 (471) .|++||+|||+|++ |.+++++|++||+++| +++++ +..+||+++++|+ ++|+|+|.+||||| T Consensus 3 ~L~~Lv~ipS~sg~----------E~~v~~~l~~~l~~~G---~~v~~----d~~GNvia~~~g~~~~~~l~l~~H~DtV 65 (340) T 2fvg_A 3 YLKELSMMPGVSGD----------EGKVRDFIKSKIEGLV---DNLYT----DVLGNLIALKRGRDSSKKLLVSAHMDEV 65 (340) T ss_dssp CHHHHHHSCCBTTC----------CHHHHHHHHHHHGGGS---SEEEE----CTTSCEEEEECCSEEEEEEEEEEECCBC T ss_pred HHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC---CEEEE----ECCCEEEEEECCCCCCCEEEEECCCCCC T ss_conf 69998559997987----------8999999999999759---98999----1795499998378999859998335558 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCEEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 2887767788863543345421356422242035899999887631478--77736899815643364469999999776 Q T0607 101 PEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGL--PYPRCILIIEACEESGSYDLPFYIELLKE 178 (471) Q Consensus 101 p~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~--~~~~~~~~~~~~EE~G~~g~~~~~~~~~~ 178 (471) |++....|...++. ..+.+..|++...+.. +..... ......+.+..+|+.+..+. T Consensus 66 p~~~~~~~~~g~~~-------~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 123 (340) T 2fvg_A 66 GFVVSKIEKDGKVS-------FLPVGGVDPRILPGKV------VQVKNLKGVIGYRPIHLQRDEENTPPRF--------- 123 (340) T ss_dssp EEEEEEECTTSCEE-------EEEESCCCGGGCTTCE------EEETTEEEEEEECC-----------CCS--------- T ss_pred CCCCCCCCCCCCEE-------EECCCCCCHHHHHHHH------HHHHHCCCCCCCCCEEEEHHHHCCCCCH--------- T ss_conf 98387546578466-------3034241213565566------5343024666763034202331144202--------- Q ss_pred HCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 42896089976877768776558885102368888986447763445677414789999999999974002450213310 Q T0607 179 RIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQL 258 (471) Q Consensus 179 ~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 258 (471) ..................+..+..+ .+...........+ ..+. +........+..+......... T Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 188 (340) T 2fvg_A 124 ----ENLRIDFGFSSADEAKKYVSIGDYV--SFVSDYIEKNGRAV--GKAF---DDRAGCSVLIDVLESGVSPAYD---- 188 (340) T ss_dssp ----TTEEEECSCSSHHHHHTTCCTTCEE--EECCCCEEETTEEE--ESCH---HHHHHHHHHHHHHHTCCCCSEE---- T ss_pred ----HHHHHHHCCCCCCCCCEEECCCCCE--EEEEEEEEECCCCC--CCCC---CCHHHHHHHHHHHHHHHHHCCC---- T ss_conf ----4444210245200121255136522--65003798336311--2433---3424589999999874440133---- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEEE Q ss_conf 14443000899999986334555654211100123200101233332210012013021000578513035474899997 Q T0607 259 YCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKLS 338 (471) Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~d 338 (471) ...+.......+...++...|.||..+...++ T Consensus 189 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (340) T 2fvg_A 189 ------------------------------------------------TYFVFTVQEETGLRGSAVVVEQLKPTCAIVVE 220 (340) T ss_dssp ------------------------------------------------EEEEEECCCC-----CHHHHHHHCCSEEEEEE T ss_pred ------------------------------------------------CEECCCCEEEEECCCCCCCCCCCCCHHEEEEE T ss_conf ------------------------------------------------10012202442024576433222521101011 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHH Q ss_conf 51278788899999999999973236633899983157677668998889999999999983697652344277655689 Q T0607 339 MRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMS 418 (471) Q Consensus 339 ~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~ 418 (471) +|..+........+. .. ........ ... .. ....++.+...+..+.++.+.........+| ++|++ T Consensus 221 ~~~~~~~~~~~~~~~----~~---~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gtDa~ 286 (340) T 2fvg_A 221 TTTAGDNPELEERKW----AT---HLGDGPAI--TFY---HR-GYVIPKEIFQTIVDTAKNNDIPFQMKRRTAG-GTDAG 286 (340) T ss_dssp EEEECSCSTTCCSSS----SC---CTTSCCEE--CSC---CS-SSCCCHHHHHHHHHHHHHTTCCCEECCCC-------- T ss_pred EEECCCCHHHHHHHH----HC---CCCCCCCC--CCC---CC-CCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCHHH T ss_conf 243464056788864----20---13566420--012---46-6555302256668999982998417607886-64799 Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999861899899968778666756777600489999999999999999 Q T0607 419 MLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYS 466 (471) Q Consensus 419 ~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~ 466 (471) .|.....|+|++.+||+.. ++|++|||++++++.+++++|.++|.+ T Consensus 287 ~~~~~~~GiPtv~~Gpg~~--~~H~~~E~v~i~~l~~~~~~l~~~~~~ 332 (340) T 2fvg_A 287 RYARTAYGVPAGVISTPAR--YIHSPNSIIDLNDYENTKKLIKVLVEE 332 (340) T ss_dssp ------CCSCEEEEEEEEE--ESSTTCEEEEHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCEEEECCCCC--CCCCCCEEEEHHHHHHHHHHHHHHHHC T ss_conf 9998679998999880506--665622088899999999999999983 No 30 >2cf4_A Protein PH0519, phtet1-12S; aminopeptidase, metalloprotein, hyperthermophIle, archaea, tetrahedral, hydrolase; 3.08A {Pyrococcus horikoshii} Probab=99.93 E-value=8.3e-29 Score=195.02 Aligned_cols=330 Identities=13% Similarity=0.027 Sum_probs=175.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCC Q ss_conf 99999999961789798866666665479999999999999835488417897538992489998737998879997340 Q T0607 18 EILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHL 97 (471) Q Consensus 18 ~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~ 97 (471) +++++|++||+|||+|++ +.+++++|.+||++++ ++++ +..+||+++++ ++.|.|+|.||| T Consensus 3 ~~~~~l~~Lv~ipS~sg~----------E~~~~~~l~~~l~~~g----~~~~----d~~gnlia~~~-~~~p~i~~~aH~ 63 (332) T 2cf4_A 3 SMIEKLKKFTQIPGISGY----------EERIREEIIREIKDFA----DYKV----DAIGNLIVELG-EGEERILFMAHM 63 (332) T ss_dssp CCHHHHHHHHHSCCCTTC----------CHHHHHHHHHTTTTSS----CCEE----CSSSCEEECCS-CSSCCCEEEEEC T ss_pred HHHHHHHHHHCCCCCCCC----------HHHHHHHHHHHHHHCC----CEEE----CCCCEEEEEEC-CCCCEEEEEECC T ss_conf 899999999739997977----------7999999999998659----9898----57876999988-999869999347 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 32328877677888635433454213564222420358999998876314787773689981564336446999999977 Q T0607 98 DKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLK 177 (471) Q Consensus 98 DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~ 177 (471) ||||.+..+.|+ ....+++|+|..|+|+++++.+.++....+. .+.+...+...++....+.... T Consensus 64 DTv~~~~~~~~~-------~g~~~~~g~g~~d~k~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----- 128 (332) T 2cf4_A 64 DEIGLLITGITD-------EGKLRFRKVGGIDDRLLYGRHVNVVTEKGIL---DGVIGATPPHLSLERDKSVIPW----- 128 (332) T ss_dssp CCCEEEEEEECT-------TSCEEEEEESCCCGGGTTTCEEEEECSSCEE---EEECCCCCCSSCSSCCCSCCCT----- T ss_pred CCCCCCCCCCCC-------CCCEEEECCCCCCCCCCCCCEEEEEECCCCC---CCEECCEEEEEEECCCCCCCHH----- T ss_conf 736767875132-------8987777366416655454189998037741---0215110134300234353103----- Q ss_pred HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 64289608997687776877655888510236888898644776344567741478999999999997400245021331 Q T0607 178 ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQ 257 (471) Q Consensus 178 ~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 257 (471) .... ...................++.........+ ...|++. .....++...+...+..+.......... T Consensus 129 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 198 (332) T 2cf4_A 129 YDLV-----IDIGAESKEEALELVKPLDFAVFKKHFSVLN--GKYVSTR-GLDDRFGVVALIEAIKDLVDHELEGKVI-- 198 (332) T ss_dssp TSCC-----BBCCCSSHHHHHTTCCTTCEEEECCCCEECS--SSEEECT-THHHHHHHHHHHHHHHSSGGGCCSSCCE-- T ss_pred HHHH-----CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC--CCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCC-- T ss_conf 3320-----0002321012332332234136653479963--6322345-3456310355689999987421356533-- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEE Q ss_conf 01444300089999998633455565421110012320010123333221001201302100057851303547489999 Q T0607 258 LYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKL 337 (471) Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~ 337 (471) ...+.....+........+.++..+...+ T Consensus 199 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (332) T 2cf4_A 199 ---------------------------------------------------FAFTVQEEVGLKGAKFLANHYYPQYAFAI 227 (332) T ss_dssp ---------------------------------------------------EEEESSCTTTSHHHHHHTTTCCCSSEEEC T ss_pred ---------------------------------------------------CCCCEEEECCCCCCCCCCCCCCHHHHHHH T ss_conf ---------------------------------------------------33100221145556521102314443210 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH Q ss_conf 75127878889999999999997323663389998315767766899888999999999998369765234427765568 Q T0607 338 SMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFM 417 (471) Q Consensus 338 d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~ 417 (471) +.|.......... ............ ..+ ..++.+......+.++.+..+......|| +|+ T Consensus 228 ~~~~~~~~~~~~~------------~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~gg--tDa 287 (332) T 2cf4_A 228 DSFACCSPLTGDV------------KLGKGPVIRAVD--NSA----IYSRDLARKVWSIAEKNGIEIQIGVTGGG--TDA 287 (332) T ss_dssp CEEECSSSSSTTC------------CTTSCCEEEEEC--SSC----BCCHHHHHHHHHHHHTTTCCCEEEECSSC--CGG T ss_pred CCCCHHHCCCCHH------------HHCCCCCEEECC--CCC----CCCHHHHHHHHHHHHHHCCCCEEECCCCC--HHH T ss_conf 1220010021001------------103444133024--666----66857767799999996999699714601--099 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99998618998999687786667567776004899999999999999999 Q T0607 418 SMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSF 467 (471) Q Consensus 418 ~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~l 467 (471) ++|. .++|++.+|++. .++|++|||++++++.+.+++|.+++.+| T Consensus 288 ~~~~---~gip~v~ig~~~--~~~H~~~E~v~i~~l~~~~~ll~~~~~~l 332 (332) T 2cf4_A 288 SAFQ---DRSKTLALSVPI--KYLHSEVETLHLNDLEKLVKLIEALAFEL 332 (332) T ss_dssp GGTT---TSSCEEEEEEEE--ESTTTTTCEEEHHHHHHHHTTSSTTTTTC T ss_pred HHHH---CCCCEEEEECCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHC T ss_conf 9997---689989997580--77877121999999999999999999759 No 31 >2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A Probab=99.92 E-value=6.3e-26 Score=177.19 Aligned_cols=335 Identities=11% Similarity=0.004 Sum_probs=158.7 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC Q ss_conf 99999996178979886666666547999999999999983548841789753899248999873799887999734032 Q T0607 20 LPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDK 99 (471) Q Consensus 20 i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~i~l~~H~Dv 99 (471) +++|++||+|||+|++++ .+++++|.+||++++ +++++ +..+||+++++| +.|+|+|.+|||| T Consensus 12 ~elL~~Lv~ipS~sg~E~---------~~i~~~l~~~l~~~g---~~v~~----D~~GNvia~~~g-~~p~lll~~H~Dt 74 (354) T 2vpu_A 12 WKLMQEIIEAPGVSGYEH---------LGIRDIVVDVLKEVA---DEVKV----DKLGNVIAHFKG-SSPRIMVAAHMDK 74 (354) T ss_dssp HHHHHHHHHSCCBTTCGG---------GTHHHHHHHHHHTTC---SEEEE----CTTCCEEEEECC-SSSEEEEECCCCB T ss_pred HHHHHHHHCCCCCCCCHH---------HHHHHHHHHHHHHCC---CEEEE----ECCCCEEEEECC-CCCEEEEEECCCC T ss_conf 999999973999596528---------999999999999719---96999----069848999889-9965999832567 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 3288776778886354334542135--64222420358999998876314787773689981564336446999999977 Q T0607 100 QPEMSGWSDDLHPWKPVLKNGLLYG--RGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDLPFYIELLK 177 (471) Q Consensus 100 Vp~~~~~~w~~~Pf~~~~~~~~~~G--rG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~~~~~~~~~ 177 (471) ||.+.. | ..+++.+++ +|..|+|+.+.+.+.+ +...........+++..++|.+..+...+... T Consensus 75 vp~~~~------~---~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-- 140 (354) T 2vpu_A 75 IGVMVN------H---IDKDGYLHIVPIGGVLPETLVAQRIRF---FTEKGERYGVVGVLPPHLRRGQEDKGSKIDWD-- 140 (354) T ss_dssp CEEEEE------E---ECTTSCEEEEEESSCCGGGGTTCEEEE---EETTEEEEEEECCCCSTTC---------CCGG-- T ss_pred CCCCCC------C---CCCCCCEEEEECCCCCHHHHHHHHHHH---HHHCCCCCCEEEEEEEEEEECCCCCCCCCCHH-- T ss_conf 898387------3---767984899844870465676678788---76069743216876545661343334321077-- Q ss_pred HHCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC Q ss_conf 64289608997687776877655888510236888898644776344567741478999999999997400245021331 Q T0607 178 ERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQ 257 (471) Q Consensus 178 ~~~~~~d~~~~~~~~~~~~~~~~i~~g~kG~~~~~i~v~g~~~~~hs~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 257 (471) ... .+ .............+..+..+.....+...+.. .|+. .+....+++..+..+...+............ T Consensus 141 -~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 212 (354) T 2vpu_A 141 -QIV-VD---VGASSKEEAEEMGFRVGTVGEFAPNFTRLNEH--RFAT-PYLDDRICLYAMIEAARQLGDHEADIYIVGS 212 (354) T ss_dssp -GCC-EE---CSCSSHHHHHHTTCCTTCEEEECCCCEECSSS--EEEC-TTHHHHHHHHHHHHHHHHCCCCSSEEEEEEC T ss_pred -HHH-HH---CCCCCHHHHCCCCEEECEEEEEEEEEEEECCC--EEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf -753-11---16444655136731102156544469995241--3772-4445642034459999998640144310001 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCEEEEECCCCCCCCEECCEEEEEE Q ss_conf 01444300089999998633455565421110012320010123333221001201302100057851303547489999 Q T0607 258 LYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTSLKL 337 (471) Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~~~~~~~~~~nvip~~~~~~~ 337 (471) . +..+ +........+.++....... T Consensus 213 ~---------------------------------------------------~~~~----g~~~~~~~~~~~~~~~~~~~ 237 (354) T 2vpu_A 213 V---------------------------------------------------QEEV----GLRGARVASYAINPEVGIAM 237 (354) T ss_dssp S---------------------------------------------------CCTT----TSHHHHHHHHHHCCSEEEEE T ss_pred C---------------------------------------------------EEEC----CCCCCCCCCCCCCCCCCEEE T ss_conf 2---------------------------------------------------0331----41034222333345410122 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCEEECCCCHHH Q ss_conf 75127878889999999999997323663389998315767766899888999999999998-36976523442776556 Q T0607 338 SMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMT-YYDKPAAYMGEGGTIPF 416 (471) Q Consensus 338 d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~gGt~~~ 416 (471) +.+........ ...........+..... ...+............ ..+..+.....+| ++| T Consensus 238 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-gtD 298 (354) T 2vpu_A 238 DVTFAKQPHDK----------GKIVPELGKGPVMDVGP--------NINPKLRAFADEVAKKYEIPLQVEPSPRPT-GTD 298 (354) T ss_dssp EEEECCCTTST----------TCCCCCTTSCCEEEEST--------TSCHHHHHHHHHHHHHTTCCCEEEECCSCC-SST T ss_pred EEEECCCCCHH----------HHHHHHHCCCCCCCCCC--------CCCCCHHHHHHHHHHHHCCCCCEEEECCCC-CCH T ss_conf 02323552025----------56667643540002443--------347300134688999854786527840875-777 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999861899899968778666756777600489999999999999999971 Q T0607 417 MSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ 469 (471) Q Consensus 417 ~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~~~l~~la~ 469 (471) ++.|.....|+|++.+|||. .++|++|||++++++.+++++|..+|.+|.. T Consensus 299 a~~~~~~~~Giptv~~Gpg~--~~~Ht~~E~v~i~~v~~~~~il~~~i~~l~~ 349 (354) T 2vpu_A 299 ANVMQINKEGVATAVLSIPI--RYMHSQVELADARDVDNTIKLAKALLEELKP 349 (354) T ss_dssp HHHHHTSTTCCEEEEEEEEE--BSTTSTTCEEEHHHHHHHHHHHHHHHHHCCC T ss_pred HHHHHHHCCCCCEEEECCCC--CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC T ss_conf 89999857999799989142--7787544799999999999999999986550 No 32 >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A 2anp_A Probab=99.67 E-value=1.7e-14 Score=106.42 Aligned_cols=168 Identities=18% Similarity=0.154 Sum_probs=122.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEEECCC-CCEEE Q ss_conf 889999999998899999999999617897988666666654799999999999998354884--178975389-92489 Q T0607 3 KPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGM--TLEIVRLKN-RTPLL 79 (471) Q Consensus 3 ~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~--~~~~~~~~~-~~~~v 79 (471) +...+-.++.+-..+++.+.++.|..+.+ +...+....++++||.+.+++++.... .++.+.... ...|| T Consensus 6 ~~~~i~~~~~~i~~~~~~~~l~~l~sf~~-------R~~~s~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv 78 (299) T 1rtq_A 6 QQATVTAWLPQVDASQITGTISSLESFTN-------RFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSV 78 (299) T ss_dssp CHHHHHHHGGGCCHHHHHHHHHHHHTSSC-------CCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEE T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCC-------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCE T ss_conf 07999999986199999999999608788-------67698307999999999999961615896599970588667627 Q ss_pred EEEECCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CEEE Q ss_conf 99873799--88799973403232887767788863543345421356422242035899999887631478777-3689 Q T0607 80 FMEIPGQI--DDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCIL 156 (471) Q Consensus 80 ~~~~~g~~--~~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~-~~~~ 156 (471) +++++|+. .+.|++.+|+|+++.+....|. .+.|+.|+..|++++|.++|.+++.+..+. ++++ T Consensus 79 i~~~~g~~~~~~~i~i~aH~Ds~~~~~~~~~~-------------~~~Ga~Dn~sGva~~le~ar~l~~~~~~~~~~i~f 145 (299) T 1rtq_A 79 VMTITGSEAPDEWIVIGGHLDSTIGSHTNEQS-------------VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAF 145 (299) T ss_dssp EEEECCSSEEEEEEEEEEECCCCSSTTCCTTC-------------CCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEE T ss_pred EEEECCCCCCCCEEEEEEECCCCCCCCCCCCC-------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 99963888988889998102778988766788-------------88997564032999999999998732687661688 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9815643364469999999776428960899768 Q T0607 157 IIEACEESGSYDLPFYIELLKERIGKPSLVICLD 190 (471) Q Consensus 157 ~~~~~EE~G~~g~~~~~~~~~~~~~~~d~~~~~~ 190 (471) ++...||.|..|+.++++.++.......+.+..| T Consensus 146 ~~~~~EE~GL~GS~~~a~~~~~~~~~i~~~inlD 179 (299) T 1rtq_A 146 MAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLD 179 (299) T ss_dssp EEESCGGGTSHHHHHHHHHHHHTTCEEEEEEECS T ss_pred ECCCCHHHHHCCCHHHHHHCCCCCCCCEECHHHH T ss_conf 5006314440266999972501023301000222 No 33 >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Probab=99.66 E-value=4.3e-15 Score=110.03 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=101.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCC-CCEEEEEEECCCC-CCEEEE Q ss_conf 999999999617897988666666654799999999999998354884178975--389-9248999873799-887999 Q T0607 18 EILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVR--LKN-RTPLLFMEIPGQI-DDTVLL 93 (471) Q Consensus 18 ~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~--~~~-~~~~v~~~~~g~~-~~~i~l 93 (471) ++...|.+|..+.+.+ ...+..-++..+++++|+++.|++.| ++++..+ ... ...||+++++|++ .+.|++ T Consensus 8 ~~~~~l~~l~~~~~~~--~g~R~~gs~~~~~a~~yi~~~l~~~G---~~~~~~~~~~~~~~~~Nvi~~~~g~~~~~~i~~ 82 (284) T 1tkj_A 8 NVKAHLTQLSTIAANN--GGNRAHGRPGYKASVDYVKAKLDAAG---YTTTLQQFTSGGATGYNLIANWPGGDPNKVLMA 82 (284) T ss_dssp HHHHHHHHHHHHHHTT--TTCCCTTSHHHHHHHHHHHHHHHHHT---CEEEEEEEEETTEEEEEEEEECSCSEEEEEEEE T ss_pred HHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCC---CEEEEEEEECCCCCCEEEEEEEECCCCCCEEEE T ss_conf 9999999999752689--98988999999999999999999879---917997411157654016999817999956999 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCHHHHHH Q ss_conf 73403232887767788863543345421356422242035899999887631478777-36899815643364469999 Q T0607 94 YGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGSYDLPFY 172 (471) Q Consensus 94 ~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~-~~~~~~~~~EE~G~~g~~~~ 172 (471) .+|+|+|| +|+|+.|++.+++++|++++.+++.+..+. +++++|..+||.|..|.+.+ T Consensus 83 ~aH~D~~~---------------------~~~Ga~D~~sg~a~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~ 141 (284) T 1tkj_A 83 GAHLDSVS---------------------SGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFY 141 (284) T ss_dssp EEECCCCT---------------------TSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHH T ss_pred EECCCCCC---------------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHH T ss_conf 81202567---------------------765457876324799999999986068987544776224441002331999 Q ss_pred HHHHHH Q ss_conf 999776 Q T0607 173 IELLKE 178 (471) Q Consensus 173 ~~~~~~ 178 (471) ++.++. T Consensus 142 ~~~~~~ 147 (284) T 1tkj_A 142 VNNLPS 147 (284) T ss_dssp HHHSCH T ss_pred HHHHHC T ss_conf 985211 No 34 >3gux_A Putative Zn-dependent exopeptidase; YP_001298628.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Bacteroides vulgatus atcc 8482} Probab=99.44 E-value=1.1e-11 Score=89.03 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=93.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CC----CEEEEEEECCCCCCE Q ss_conf 999999999961789798866666665479999999999999835488417897538--99----248999873799887 Q T0607 17 EEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK--NR----TPLLFMEIPGQIDDT 90 (471) Q Consensus 17 ~~~i~~l~~lv~ipS~s~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~--~~----~~~v~~~~~g~~~~~ 90 (471) ++..+.+.+|+.|. ++.+-++..+++++||.+.|++++... ..+.+... .+ ..||+++++|...+. T Consensus 27 ~~a~~~~~~l~~~g-------pR~~GS~~~~~a~~yi~~~l~~~g~~v-~~q~f~~~~~~~~~~~~~Nii~~~~g~~~~~ 98 (314) T 3gux_A 27 DSAYQYIQVQADFG-------PRVPNTQAHKECGEYLAGQLEKFGAKV-YNQYADLIAYDGTILKSRNIIGAYKPESKKR 98 (314) T ss_dssp HHHHHHHHHHHTTC-------CCCTTSHHHHHHHHHHHHHHHHTTCEE-EEEEEEEECTTSCEEEEEEEEEEESTTCSSE T ss_pred HHHHHHHHHHHCCC-------CCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEEEEEECCCCCEEEEEEEEEEECCCCCCC T ss_conf 99999999984659-------949999999999999999999879969-9997797656774567999999817999851 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH Q ss_conf 9997340323288776778886354334542135642224203589999988763147877736899815643364469 Q T0607 91 VLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGSYDL 169 (471) Q Consensus 91 i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~EE~G~~g~ 169 (471) |+|.+|+|+++..+. ..........-.|+.|+..|++++|++++.+.... +..++++++...||.|..|. T Consensus 99 ivi~AHyDs~~~~~~--------~~~~~~~~~~~~GA~DnaSGvA~lLE~Ar~l~~~~-~~~ti~fv~f~~EE~Gl~g~ 168 (314) T 3gux_A 99 ILLCAHWDSRPYADN--------DPDPKNHHTPILGVNDGASGVGVLLEIARQIQKEQ-PALGIDIVFFDSEDYGIPEF 168 (314) T ss_dssp EEEEEECCCCC----------------------------CHHHHHHHHHHHHHHHHSC-CSSEEEEEEECSCCC----- T ss_pred EEEEEECCCCCCCCC--------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHCCCCCC T ss_conf 899984057666888--------75544566654786577513999999999742125-66532786225332175554 No 35 >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 2zeg_A 2zep_A 2afs_A Probab=99.37 E-value=5.5e-11 Score=84.60 Aligned_cols=126 Identities=16% Similarity=0.068 Sum_probs=93.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-----C--CCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 66665479999999999999835488417897538-----9--9248999873799887999734032328877677888 Q T0607 39 KWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLK-----N--RTPLLFMEIPGQIDDTVLLYGHLDKQPEMSGWSDDLH 111 (471) Q Consensus 39 ~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~-----~--~~~~v~~~~~g~~~~~i~l~~H~DvVp~~~~~~w~~~ 111 (471) +.+-++...++++||.+.|++++. +..++..... . ...||+++++|+..+.|++.+|+|+++.++... . T Consensus 45 R~~GS~g~~~a~~yi~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~Nvia~~~g~~~~~ivi~AHyDs~~~~~~~~---~ 120 (329) T 2afw_A 45 RYPGSPGSYAARQHIMQRIQRLQA-DWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNN---R 120 (329) T ss_dssp CCTTSHHHHHHHHHHHHHHHTSSS-CCEEEEEEEEECCTTSSEEEEEEEEESSTTSSEEEEEEEECCCCCCCCBTT---B T ss_pred CCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCC---C T ss_conf 599897999999999999998579-971799888854557883478999996899972499961134677653455---7 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--------CCCC-CCEEEEEECCCCCC--------CHHHHHHHH Q ss_conf 635433454213564222420358999998876314--------7877-73689981564336--------446999999 Q T0607 112 PWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQ--------GLPY-PRCILIIEACEESG--------SYDLPFYIE 174 (471) Q Consensus 112 Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~--------~~~~-~~~~~~~~~~EE~G--------~~g~~~~~~ 174 (471) .-.|+.|+..|++++|+++|.+.+. +.++ .++++++...||.| ..|.+++++ T Consensus 121 -----------~~pGA~DnaSGvA~lLE~AR~l~~~~~~~~~~~~~~p~~tI~fv~~~~EE~G~~~~~~~~L~GS~~~a~ 189 (329) T 2afw_A 121 -----------VFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAA 189 (329) T ss_dssp -----------CCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHHHH T ss_pred -----------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCHHHHHH T ss_conf -----------889977762679999999999987665422102689983399998356403756776554325799999 Q ss_pred HHHHH Q ss_conf 97764 Q T0607 175 LLKER 179 (471) Q Consensus 175 ~~~~~ 179 (471) .+... T Consensus 190 ~~~~~ 194 (329) T 2afw_A 190 KMAST 194 (329) T ss_dssp HHHTS T ss_pred HHHHC T ss_conf 98752 No 36 >1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Probab=99.04 E-value=1.6e-09 Score=75.54 Aligned_cols=80 Identities=9% Similarity=-0.073 Sum_probs=63.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 88999999999998369765234427765568999986189989996877866-67567776004899999999999999 Q T0607 386 SDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPH-SNAHGPNEFLHLDMVKKLTSCVSYVL 464 (471) Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~-~~~H~~~E~~~i~~l~~~~~il~~~l 464 (471) +| +.++++++.++.+.......+.|| +|+++|... |+|++.|||+... ..+|++|||++++++.+++++|.++| T Consensus 1 nP-~~~al~~a~~~~g~~v~p~~~~g~--TDar~~~~~--g~~~~~fgP~~~~~~~~H~~nE~I~i~~l~~~~~~y~~ii 75 (88) T 1q7l_B 1 NP-WWAAFSRVCKDMNLTLEPEIMPAA--GDNRYIRAV--GVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLL 75 (88) T ss_dssp CH-HHHHHHHHHHHTTCCEEEEECCSC--SHHHHHHHT--TCCEEEECCCCSCCCCTTSTTCEEEHHHHHHHHHHHHHHH T ss_pred CH-HHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHC--CCCCEEECCCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHH T ss_conf 95-899999999985997278863577--414877747--7883687788786422347876156999999999999999 Q ss_pred HHHHHC Q ss_conf 999713 Q T0607 465 YSFSQK 470 (471) Q Consensus 465 ~~la~~ 470 (471) .+|++. T Consensus 76 ~~la~~ 81 (88) T 1q7l_B 76 PALASV 81 (88) T ss_dssp HHHHTC T ss_pred HHHHCC T ss_conf 999669 No 37 >3iib_A Peptidase M28; YP_926796.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Probab=98.92 E-value=1.3e-08 Score=69.81 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=39.7 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCC--CCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 568999986189989996877866--6756777---6004899999999999999999713 Q T0607 415 PFMSMLGEQFPKAQFMITGVLGPH--SNAHGPN---EFLHLDMVKKLTSCVSYVLYSFSQK 470 (471) Q Consensus 415 ~~~~~~~~~~~~~p~~~~G~g~~~--~~~H~~~---E~~~i~~l~~~~~il~~~l~~la~~ 470 (471) +|...|... |+|++.+...... ..-|++. |.++.+.|.+.+++++.+.+.||+. T Consensus 375 SDh~~F~~~--GIP~~~~~~~~~~~~~~YHt~~Dt~d~id~~~l~~~~~~~~~~a~~lA~~ 433 (444) T 3iib_A 375 PDVSMLPAL--GVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANS 433 (444) T ss_dssp GGGTTSGGG--TCCEEEEEECCTTGGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHC T ss_pred CHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 839999978--98289987178728898999635065589999999999999999999579 No 38 >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Probab=98.56 E-value=7.5e-07 Score=58.97 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=51.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC---CCCCHHHHHHHHHHHHH Q ss_conf 889999999999983697652344277655689999861899899968778666756777---60048999999999999 Q T0607 386 SDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPN---EFLHLDMVKKLTSCVSY 462 (471) Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~---E~~~i~~l~~~~~il~~ 462 (471) ...+..+...+.....+ .......++| |...|... |+|++.+.....+..-|++. |+++.+.+.+.+++++. T Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~S--D~~~F~~~--GIP~~~~~~~~~~~~yHT~~Dt~d~id~~~l~~~~~~~~~ 394 (421) T 2ek8_A 320 KNRVTDLGAAASSRLSG-VLPYGQEGRS--DHESFHAL--GIPAALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGS 394 (421) T ss_dssp CCHHHHHHHHHHHHHTS-CCCEEECCSS--THHHHHTT--TCCEEEEEEESCCTTTTSTTCCGGGBCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC-CCCCCCCCCC--HHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH T ss_conf 05699999987641375-3568998989--58999978--9988999899898998896455355999999999999999 Q ss_pred HHHHHHHC Q ss_conf 99999713 Q T0607 463 VLYSFSQK 470 (471) Q Consensus 463 ~l~~la~~ 470 (471) ++..|++. T Consensus 395 ~~~~la~~ 402 (421) T 2ek8_A 395 AVYQAARP 402 (421) T ss_dssp HHHHHHSS T ss_pred HHHHHHCC T ss_conf 99998377 No 39 >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell membrane, disulfide bond, endocytosis, HOST- virus interaction, receptor, secreted; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 1cx8_A* 1suv_A 2nsu_A Probab=98.53 E-value=1.1e-06 Score=57.87 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=60.3 Q ss_pred EEEEEEECCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCC Q ss_conf 489998737998--87999734032328877677888635433454213564222420358999998876314----787 Q T0607 77 PLLFMEIPGQID--DTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQ----GLP 150 (471) Q Consensus 77 ~~v~~~~~g~~~--~~i~l~~H~DvVp~~~~~~w~~~Pf~~~~~~~~~~GrG~~D~k~~~~~~l~a~~~l~~~----~~~ 150 (471) .||++.++|+.. +.|++.+|.|. ||.|+.|+-.|.+++|+.+|.+.+. +.. T Consensus 267 ~NVig~I~G~~~~de~VivgaH~Ds-----------------------w~~GA~Dn~SGtA~lLElaR~l~~l~~k~g~~ 323 (640) T 3kas_A 267 LNIFGVIKGFVEPDHYVVVGAQRDA-----------------------WGPGAAKSGVGTALLLKLAQMFSDMVLKDGFQ 323 (640) T ss_dssp EEEEEEECCSSEEEEEEEEEEECCC-----------------------SSCCTTTTHHHHHHHHHHHHHHHHHHHTSCCC T ss_pred EEEEEEEECCCCCCCEEEEECCCCC-----------------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 8899998688888736998433244-----------------------16898787600999999999999868752899 Q ss_pred CCC-EEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEECCCC Q ss_conf 773-6899815643364469999999776428-96089976877 Q T0607 151 YPR-CILIIEACEESGSYDLPFYIELLKERIG-KPSLVICLDSG 192 (471) Q Consensus 151 ~~~-~~~~~~~~EE~G~~g~~~~~~~~~~~~~-~~d~~~~~~~~ 192 (471) |.| ++++..+.||.|..|...+++.+...+. +.-+.+..|.. T Consensus 324 P~RtI~F~sw~gEE~Gl~GS~~~ve~~~~~l~~~~vAyiN~D~~ 367 (640) T 3kas_A 324 PSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKA 367 (640) T ss_dssp CSEEEEEEEESSGGGTSHHHHHHHHHTTTTGGGTEEEEEECTTC T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHCEEEEEEECCC T ss_conf 87349999977744565442999985712333278999973255 No 40 >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, calcium cation, chloride anion, zinc IONS, dipeptidase; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* 3d7g_A* 3d7h_A* ... Probab=98.52 E-value=9e-07 Score=58.49 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=27.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHH---CCCCCC-CEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 6422242035899999887631---478777-3689981564336446999999977 Q T0607 125 RGGADDGYSAYASLTAIRALEQ---QGLPYP-RCILIIEACEESGSYDLPFYIELLK 177 (471) Q Consensus 125 rG~~D~k~~~~~~l~a~~~l~~---~~~~~~-~~~~~~~~~EE~G~~g~~~~~~~~~ 177 (471) .|+.|+-.|.+++|+.+|.+.+ .+..|. +++++..+.||.|..|...|++.+. T Consensus 340 ~GA~Dn~SGtA~lLEiAR~l~~l~~~g~~P~RtI~F~~w~gEE~GLlGS~~~ve~~~ 396 (707) T 3fed_A 340 FGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLLGSTEWAEENV 396 (707) T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCC T ss_conf 998879855899999999999877517888736999987884377535699998571 No 41 >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PSI, protein structure initiative; 2.80A {Thermotoga maritima} Probab=96.97 E-value=0.0041 Score=35.84 Aligned_cols=81 Identities=9% Similarity=-0.049 Sum_probs=56.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCE-EE-----CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHH Q ss_conf 689988899999999999836976523-44-----277655689999861899899968778666756777600489999 Q T0607 381 NAPLLSDWLAKAASEASMTYYDKPAAY-MG-----EGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVK 454 (471) Q Consensus 381 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~-----~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~ 454 (471) .++..++.+.+.+++.+++.. .|... .. .||+ +++.+++. .|+|++.+|.... .+|++.|-+.+.|+. T Consensus 364 ~t~~~~~~~~~~~~~~a~~~~-Ip~Q~~~~~r~d~~gGs-Tig~~~a~--~Gi~tvdiG~P~l--~MHS~rE~~~~~D~~ 437 (450) T 2glf_A 364 STNDAHAEFVARVRKVLNEQG-VIWQVATLGKVDQGGGG-TIAKFFAE--RGSDVIDMGPALL--GMHSPFEISSKADLF 437 (450) T ss_dssp TCCBCCHHHHHHHHHHHHHTT-CCEEECCSSSTTSCCCC-CTHHHHHT--TTSCEEEEECEEB--STTSSSEEEEHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCC-CHHHHHHC--CCCCEEEECHHHH--HHHHHHHHHHHHHHH T ss_conf 356548999999999998679-98179886058899735-09999866--7998898558775--502688776258899 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q T0607 455 KLTSCVSYVLYSF 467 (471) Q Consensus 455 ~~~~il~~~l~~l 467 (471) ..++++..++.+| T Consensus 438 ~~~~l~~af~e~l 450 (450) T 2glf_A 438 ETYVAYRSLMEKL 450 (450) T ss_dssp HHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999639 No 42 >3l6s_A Aspartyl aminopeptidase; hydrolase, structural genomics consortium, SGC, metal-binding, metalloprotease, protease, zinc; HET: SD3; 2.20A {Homo sapiens} Probab=96.87 E-value=0.004 Score=35.86 Aligned_cols=80 Identities=13% Similarity=-0.026 Sum_probs=55.9 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEE----CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 889999999999983697652344----2776556899998618998999687786667567776004899999999999 Q T0607 386 SDWLAKAASEASMTYYDKPAAYMG----EGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVS 461 (471) Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~----~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~ 461 (471) ++.....+++++++.+........ .||| +...+.+ ...|++++.+|+... .+|+|.|-+++.|+...+++|. T Consensus 394 ~~~~~~~~~~la~~~~Ip~Q~~~~r~d~~gGs-Tig~i~a-s~~Gi~tiDiGiP~l--sMHS~~E~~~~~Dv~~~~~ll~ 469 (485) T 3l6s_A 394 NAVSEALIREVANKVKVPLQDLMVRNDTPCGT-TIGPILA-SRLGLRVLDLGSPQL--AMHSIREMACTTGVLQTLTLFK 469 (485) T ss_dssp CHHHHHHHHHHHHHHTCCCEEECCCTTSCCCC-CHHHHHH-HHHTCEEEEEECEEE--STTSSSEEEESHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH-HHHHHHH-HCCCCCEEEECHHHH--HHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999999998699888725448888713-7999997-378996899377872--2205887744687999999999 Q ss_pred HHHHHHHH Q ss_conf 99999971 Q T0607 462 YVLYSFSQ 469 (471) Q Consensus 462 ~~l~~la~ 469 (471) ..+..|.+ T Consensus 470 aF~e~~~~ 477 (485) T 3l6s_A 470 GFFELFPS 477 (485) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99987887 No 43 >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 Probab=96.24 E-value=0.022 Score=31.35 Aligned_cols=75 Identities=12% Similarity=-0.063 Sum_probs=51.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEE-----CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 8889999999999983697652344-----27765568999986189989996877866675677760048999999999 Q T0607 385 LSDWLAKAASEASMTYYDKPAAYMG-----EGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSC 459 (471) Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~i 459 (471) .++.+...+++.+++.. .|..... .+|++++..+++. .|++++.+|.... .+|++.|.+.++|+...+++ T Consensus 377 ~~~~~~~~~~~~a~~~~-Ip~Q~~~~~r~d~~gGsTig~i~a~--~Gi~tvdiGiP~l--~MHS~rE~~~~~D~~~~~~l 451 (458) T 1y7e_A 377 ADAELVSYIRQLLNKNN-IAWQVATLGKVEEGGGGTVAKFLAG--YGIRTIDMGPAVI--SMHSPMEITSKFDLYNAYLA 451 (458) T ss_dssp -CHHHHHHHHHHHHHHT-CCEEEEEECC-----CHHHHHHHHH--HTCEEEEECCEEB--STTSSSEEEEHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHHC--CCCCEEECCHHHH--HHHHHHHHHCHHHHHHHHHH T ss_conf 38999999999999869-9921788516889985568999867--7988998478776--65689988541889999999 Q ss_pred HHHHH Q ss_conf 99999 Q T0607 460 VSYVL 464 (471) Q Consensus 460 l~~~l 464 (471) |...+ T Consensus 452 l~aF~ 456 (458) T 1y7e_A 452 YKAFY 456 (458) T ss_dssp HHHTT T ss_pred HHHHH T ss_conf 99995 No 44 >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structural genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} Probab=95.81 E-value=0.0028 Score=36.82 Aligned_cols=77 Identities=9% Similarity=-0.040 Sum_probs=52.2 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEE----ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 88999999999998369765234----42776556899998618998999687786667567776004899999999999 Q T0607 386 SDWLAKAASEASMTYYDKPAAYM----GEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVS 461 (471) Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~----~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~~il~ 461 (471) ++.+...+++.+++......... ..||| +++.+.....|+|++.+|++.. .+|++.|.++++|+...+++|. T Consensus 344 ~~~~~~~l~~~a~~~~Ip~Q~~~~~~~~~gGs--t~g~~~~s~~Gi~t~diGiP~~--~mHS~~E~~~~~D~~~~~~ll~ 419 (428) T 2ijz_A 344 NSETAGFFRHLCQDSEVPVQSFVTRSDMGCGS--TIGPITASQVGVRTVDIGLPTF--AMHSIRELAGSHDLAHLVKVLG 419 (428) T ss_dssp CHHHHTTTTHHHHHTCCCCCBCCCCSSCCCCC--CCSTTTGGGGSCCEEEECCCCC--SCSSSSCCCCSSHHHHHHTTHH T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH--HHHHHHHHCCCCCEEEECHHHH--HHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999988799889978458999735--8999998379997899657871--0136776613899999999999 Q ss_pred HHHHH Q ss_conf 99999 Q T0607 462 YVLYS 466 (471) Q Consensus 462 ~~l~~ 466 (471) .++.. T Consensus 420 af~~~ 424 (428) T 2ijz_A 420 AFYAS 424 (428) T ss_dssp HHTTC T ss_pred HHHHC T ss_conf 99834 No 45 >2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} Probab=95.57 E-value=0.016 Score=32.16 Aligned_cols=75 Identities=17% Similarity=0.010 Sum_probs=50.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEE------ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 9888999999999998369765234------4277655689999861899899968778666756777600489999999 Q T0607 384 LLSDWLAKAASEASMTYYDKPAAYM------GEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLT 457 (471) Q Consensus 384 ~~~~~~~~~~~~a~~~~~~~~~~~~------~~gGt~~~~~~~~~~~~~~p~~~~G~g~~~~~~H~~~E~~~i~~l~~~~ 457 (471) ..++.+...+++.+++.. .|.... ..||+ ++..+.++ .|+|++.+|+... .+|++.|-+.++|+...+ T Consensus 379 ~a~~~~~~~l~~~a~~~~-Ip~Q~~~~~r~d~~gGs-Tig~i~a~--~Gi~tvDiGiP~l--~MHS~rE~~~~~Di~~~~ 452 (461) T 2glj_A 379 DANPEYIAELRRILSKES-VNWQTAELGKVDQGGGG-TIAYILAE--YGMQVIDCGVALL--NMHAPWEISSKADIYETK 452 (461) T ss_dssp CCCHHHHHHHHHHHHHTC-CCEEECCSSSSSSSCCC-CTHHHHHT--TTCBCCBBCCEEE--STTSSSEEEEHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCC-CHHHHHHC--CCCCEEEECHHHH--HHHHHHHHHHHHHHHHHH T ss_conf 348999999999999769-98158886258999846-48999857--7998898268775--432688774348899999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q T0607 458 SCVSYVL 464 (471) Q Consensus 458 ~il~~~l 464 (471) ++|...+ T Consensus 453 ~l~~aF~ 459 (461) T 2glj_A 453 NGYSAFL 459 (461) T ss_dssp HHHHTTS T ss_pred HHHHHHH T ss_conf 9999996 No 46 >3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} Probab=72.67 E-value=3.3 Score=17.82 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=26.5 Q ss_pred HHHHHHHHHHCCCCEEEECCCC-CCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5689999861899899968778-666756777---600489999999999999999971 Q T0607 415 PFMSMLGEQFPKAQFMITGVLG-PHSNAHGPN---EFLHLDMVKKLTSCVSYVLYSFSQ 469 (471) Q Consensus 415 ~~~~~~~~~~~~~p~~~~G~g~-~~~~~H~~~---E~~~i~~l~~~~~il~~~l~~la~ 469 (471) +|-..|.....++|+..+-... ...--|++. ++++.+.+....+++..+|..+-+ T Consensus 297 SDErqf~spg~dlPV~sl~r~~~~y~EYHTS~Dn~d~In~~gL~~s~~~i~~iI~~le~ 355 (435) T 3k9t_A 297 SDERQFSSPGINLSVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIEN 355 (435) T ss_dssp STHHHHTSTTTCCCEEEEESSCTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHC T ss_conf 67665556565786448850466765679975423235888999999999999999864 No 47 >1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1 Probab=67.28 E-value=4.3 Score=17.11 Aligned_cols=70 Identities=1% Similarity=-0.047 Sum_probs=47.7 Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE Q ss_conf 474899997512787888999999999999732366338999831576776689988899999999999836976523 Q T0607 330 RPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAY 407 (471) Q Consensus 330 p~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 407 (471) .+--++.+++|...+..++.++..++..+.+...+.+.+++.-. .+.....+..++.+..++++-.+.-. T Consensus 12 ~~Gq~~d~~~~VsT~~ELqr~L~EL~~~i~r~GAr~V~IsIsA~--------~~~qA~~~~~ii~r~~~~LGY~DINV 81 (106) T 1qys_A 12 DNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITAR--------TKKEAEKFAAILIKVFAELGYNDINV 81 (106) T ss_dssp CSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECS--------SHHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--------CHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 79818889999805489999999999999871764589999966--------67889999999999999839763189 No 48 >2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1 Probab=63.57 E-value=5.1 Score=16.67 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=47.5 Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE Q ss_conf 474899997512787888999999999999732366338999831576776689988899999999999836976523 Q T0607 330 RPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKAASEASMTYYDKPAAY 407 (471) Q Consensus 330 p~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 407 (471) .+--++.+++|...+..++.+++.++..+.+...+...+++.-. .+.....+..++....++++-.+.-. T Consensus 14 ~~Gq~~e~~~~VsT~~EL~r~L~EL~~~i~r~GAr~V~IsIsA~--------~~~qA~~~~~ii~r~~~~LGY~DINV 83 (96) T 2jvf_A 14 RDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITISAE--------NDEQAKELLELIARLLQKLGYKDINV 83 (96) T ss_dssp ETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECS--------SHHHHHHHHHHHHHHHHHHTCSEEEE T ss_pred CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--------CHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 69828889999814389999999999999861764489999965--------66789999999999999839763189 No 49 >1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A Probab=43.93 E-value=11 Score=14.68 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=40.8 Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 9999999-----99889999999999961789798---86666666547999999999999983548841 Q T0607 5 QGLYDYI-----CQQWQEEILPSLCDYIKIPNKSP---HFDAKWEEHGYMEQAVNHIANWCKSHAPKGMT 66 (471) Q Consensus 5 ~~~~~~i-----~~~~~~~~i~~l~~lv~ipS~s~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~ 66 (471) .++++|+ ++..++++++-+.+++..||-|. .+.+....+ .+.+...+..|-.+.|..+|. T Consensus 16 ~~~i~~~~N~~~~E~~~~~~~~~F~~~~EHPs~SDLI~YPE~~~~~S--P~~ii~EIK~W~~~~Gr~~Fr 83 (85) T 1gxg_A 16 KKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGS--PEAVIKEIKEWRAANGKSGFK 83 (85) T ss_dssp HHHHHHHHHTSSSSHHHHHHHHHHHHTTCCTTTTHHHHSCCTTCCSS--HHHHHHHHHHHHHHTTCCCSS T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCCCC T ss_conf 99999998064652568778999999980877786255678888888--589999999999972853225 No 50 >1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A Probab=42.14 E-value=11 Score=14.51 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 9889999999999961789798---86666666547999999999999983548841 Q T0607 13 QQWQEEILPSLCDYIKIPNKSP---HFDAKWEEHGYMEQAVNHIANWCKSHAPKGMT 66 (471) Q Consensus 13 ~~~~~~~i~~l~~lv~ipS~s~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~ 66 (471) +++.|.+|+-+.+++..|+-|. .+......+ .+.+.+.+.+|-++.|..||. T Consensus 31 e~~~d~l~~hF~~iteHP~gsDLIfYP~~~~eds--PegIv~~IKeWRa~nG~PgFK 85 (87) T 1unk_A 31 DDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDS--PEGIVKEIKEWRAANGKPGFK 85 (87) T ss_dssp CHHHHHHHHHHHHHHCCTTTTHHHHSCCSSCCCS--HHHHHHHHHHHHHHTTCCCCC T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--HHHHHHHHHHHHHHCCCCCCC T ss_conf 8999999999999704999885256389988789--899999999999974997556 No 51 >3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} Probab=37.81 E-value=13 Score=14.09 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=12.8 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC Q ss_conf 20358999998876314787773689981564 Q T0607 131 GYSAYASLTAIRALEQQGLPYPRCILIIEACE 162 (471) Q Consensus 131 k~~~~~~l~a~~~l~~~~~~~~~~~~~~~~~E 162 (471) ++|.++.+.+++++.+.+. +.+++.++..+| T Consensus 307 M~GaA~v~g~~~a~a~~~~-~~nv~~~~~~~e 337 (515) T 3kzw_A 307 MCGAANVVGIIEAASRLQL-PVNIVGVLACAE 337 (515) T ss_dssp GHHHHHHHHHHHHHHHTTC-SCEEEEEEEEEE T ss_pred CCCHHHHHHHHHHHHHCCC-CCCEEEEEEHHH T ss_conf 2557999999999997288-765489997122 No 52 >3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1 Probab=28.85 E-value=19 Score=13.18 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=26.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 98889999999998899999999999617897988666 Q T0607 1 MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDA 38 (471) Q Consensus 1 ~~~~~~~~~~i~~~~~~~~i~~l~~lv~ipS~s~~~~~ 38 (471) |++++.+.+|+ ..-.+.+.+.--.|-++.++.++.|. T Consensus 1 ~lt~~~~~~~l-~~~~~~~~~~~d~Ln~LD~~vGDGD~ 37 (192) T 3cr3_A 1 LLTIDTTIEWL-GKFNEKIQENKAYLSELDGPIGDGDH 37 (192) T ss_dssp CCCHHHHHHHH-HHHHHHHHHTHHHHHHHTTTTSCSCH T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCH T ss_conf 99889999999-99999999909999986778777508 No 53 >1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 Probab=24.59 E-value=22 Score=12.70 Aligned_cols=16 Identities=6% Similarity=-0.002 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999999999999713 Q T0607 455 KLTSCVSYVLYSFSQK 470 (471) Q Consensus 455 ~~~~il~~~l~~la~~ 470 (471) .++..|.++|.+.++. T Consensus 484 ~~vr~l~~~l~~~~~~ 499 (503) T 1gyt_A 484 RPVALLAQFLLNRAGF 499 (503) T ss_dssp TTHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHCC T ss_conf 6999999999977562 No 54 >2no8_A Colicin-E2 immunity protein; helix bundle, immune system; NMR {Escherichia coli} Probab=21.91 E-value=25 Score=12.37 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 89999999999961789798---86666666547999999999999983548841 Q T0607 15 WQEEILPSLCDYIKIPNKSP---HFDAKWEEHGYMEQAVNHIANWCKSHAPKGMT 66 (471) Q Consensus 15 ~~~~~i~~l~~lv~ipS~s~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~ 66 (471) ..+++|+-+.+++..|+-|. .+...... ..+.+.+.+.+|-++.|..||. T Consensus 32 ~~d~l~~hF~~iteHP~gsDLIfYP~~~~ed--sPegI~~~IKeWRa~nGkPgFK 84 (86) T 2no8_A 32 DDNKLVREFERLTEHPDGSDLIYYPRDDRED--SPEGIVKEIKEWRAANGKSGFK 84 (86) T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHSCCSSSCC--SHHHHHHHHHHHHHHHTCCCCB T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCCC T ss_conf 8999999999980499988635629998878--8889999999999974997667 Done!