Query         T0608 ZP_02041710.1, Ruminococcus gnavus, 279 residues
Match_columns 279
No_of_seqs    132 out of 1949
Neff          8.5 
Searched_HMMs 22458
Date          Mon Jul  5 09:09:25 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0608.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0608.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2gu1_A Zinc peptidase; alpha/b 100.0 2.1E-33 9.5E-38  304.9  14.5  123  125-263   201-327 (361)
  2 2hsi_A Putative peptidase M23; 100.0 1.4E-30 6.3E-35  280.5  12.8  131  124-270   152-282 (282)
  3 1qwy_A Peptidoglycan hydrolase  99.9 1.7E-27 7.5E-32  254.0  11.5  126  124-266   162-289 (291)
  4 3csq_A Morphogenesis protein 1  99.8 3.6E-20 1.6E-24  190.8  11.7  107  131-253   175-288 (334)
  5 3it5_A Protease LASA; metallop  99.8 3.8E-19 1.7E-23  181.9  12.6  105  142-263    22-136 (182)
  6 2gpr_A Glucose-permease IIA co  96.5  0.0011 4.9E-08   48.7   2.9   93  126-228    10-112 (154)
  7 1f3z_A EIIA-GLC, glucose-speci  96.4   0.012 5.5E-07   39.6   7.5   93  126-228    15-117 (161)
  8 1ax3_A Iiaglc, glucose permeas  96.4  0.0095 4.2E-07   40.6   6.8   93  126-228    15-117 (162)
  9 1ci3_M Protein (cytochrome F);  96.1   0.015 6.8E-07   38.8   6.8   63  166-229   169-233 (249)
 10 1q90_A Apocytochrome F; membra  95.6   0.029 1.3E-06   36.3   6.6   65  168-232   170-240 (292)
 11 2jxm_B Cytochrome F; copper, e  94.9   0.045   2E-06   34.8   5.6   57  167-225   171-229 (249)
 12 2auk_A DNA-directed RNA polyme  91.6     0.1 4.6E-06   31.6   3.1   64  164-227    83-186 (190)
 13 1hcz_A Cytochrome F; electron   91.2     0.4 1.8E-05   26.5   5.8   63  166-230   168-234 (252)
 14 1e2w_A Cytochrome F; electron   90.5    0.59 2.6E-05   25.1   6.1   62  167-230   169-235 (251)
 15 2auk_A DNA-directed RNA polyme  88.1     0.6 2.7E-05   25.0   4.7   56  169-226    11-81  (190)
 16 1dcz_A Transcarboxylase 1.3S s  82.0     2.1 9.5E-05   20.3   7.8   59  168-227    10-77  (77)
 17 2d5d_A Methylmalonyl-COA decar  81.6     2.2 9.8E-05   20.2   7.0   58  169-227     8-74  (74)
 18 3h5q_A PYNP, pyrimidine-nucleo  77.8    0.89   4E-05   23.6   2.1   52  168-228   340-402 (436)
 19 2k32_A A; NMR {Campylobacter j  77.0     1.1 4.8E-05   22.8   2.3   34  168-230    69-103 (116)
 20 3bg3_A Pyruvate carboxylase, m  74.4     2.1 9.3E-05   20.3   3.2   57  168-225   651-716 (718)
 21 1bdo_A Acetyl-COA carboxylase;  74.3     1.4   6E-05   22.0   2.3   16  210-225    63-78  (80)
 22 3cdx_A Succinylglutamatedesucc  72.8     1.6 7.1E-05   21.4   2.3   17  210-226   281-297 (354)
 23 3fmc_A Putative succinylglutam  72.6     2.4 0.00011   19.9   3.2   20  210-229   304-323 (368)
 24 2k7v_A Dihydrolipoyllysine-res  72.1     2.4 0.00011   19.8   3.1   28  206-234    51-78  (85)
 25 1pmr_A Dihydrolipoyl succinylt  70.8       2 8.9E-05   20.5   2.4   21  206-227    57-77  (80)
 26 1qjo_A Dihydrolipoamide acetyl  70.0     2.1 9.2E-05   20.4   2.4   25  206-231    55-79  (80)
 27 2qj8_A MLR6093 protein; NP_106  69.4     2.1 9.3E-05   20.4   2.3   22  209-230   270-291 (332)
 28 1gjx_A Pyruvate dehydrogenase;  69.4       2 8.9E-05   20.5   2.2   40  191-231    37-80  (81)
 29 2kcc_A Acetyl-COA carboxylase   69.4       2 9.1E-05   20.4   2.3   17  211-227    57-73  (84)
 30 2dn8_A Acetyl-COA carboxylase   69.3     4.2 0.00019   17.7   6.9   60  168-227    19-85  (100)
 31 1ghj_A E2, E2, the dihydrolipo  67.9     2.8 0.00012   19.3   2.7   38  192-230    38-79  (79)
 32 3hbl_A Pyruvate carboxylase; T  67.4     2.5 0.00011   19.8   2.3   15  211-225  1130-1144(1150)
 33 2dne_A Dihydrolipoyllysine-res  66.8     2.8 0.00013   19.2   2.5   25  206-231    62-87  (108)
 34 2dnc_A Pyruvate dehydrogenase   66.6     4.7 0.00021   17.3   3.8   44  189-233    41-89  (98)
 35 1y8o_B Dihydrolipoyllysine-res  66.2     2.7 0.00012   19.5   2.3   29  203-232    79-108 (128)
 36 3crk_C Dihydrolipoyllysine-res  64.8     3.1 0.00014   18.9   2.4   26  204-230    58-84  (87)
 37 1k8m_A E2 component of branche  63.3       5 0.00022   17.1   3.3   26  207-233    60-85  (93)
 38 2ejm_A Methylcrotonoyl-COA car  63.2     5.4 0.00024   16.8   6.7   59  169-228    17-84  (99)
 39 2jku_A Propionyl-COA carboxyla  63.2     1.7 7.7E-05   21.1   0.9   16  210-225    77-92  (94)
 40 2k5n_A Putative cold-shock pro  61.1     5.8 0.00026   16.5   3.8   32  173-208     3-34  (74)
 41 1vf5_C Cytochrome F; photosynt  56.7     0.6 2.7E-05   25.0  -2.4   74  167-251   170-250 (289)
 42 2zbv_A Uncharacterized conserv  56.2     6.5 0.00029   16.1   2.9   24  216-253   222-245 (263)
 43 1z6h_A Biotin/lipoyl attachmen  55.4       7 0.00031   15.8   7.2   22  207-229    49-70  (72)
 44 1uou_A Thymidine phosphorylase  55.1     5.3 0.00023   16.9   2.2   54  168-230   374-436 (474)
 45 2q6k_A Chlorinase; complex wit  53.6     7.4 0.00033   15.6   4.6   19  213-231   227-245 (283)
 46 1brw_A PYNP, protein (pyrimidi  53.0       6 0.00027   16.4   2.2   53  168-229   337-400 (433)
 47 2dsj_A Pyrimidine-nucleoside (  52.1     6.3 0.00028   16.2   2.2   53  168-229   329-392 (423)
 48 2tpt_A Thymidine phosphorylase  48.3     6.1 0.00027   16.3   1.7   53  168-229   342-405 (440)
 49 1yqt_A RNAse L inhibitor; ATP-  47.6     5.6 0.00025   16.7   1.4   17  216-232   308-324 (538)
 50 1zy8_K Pyruvate dehydrogenase   46.6     3.2 0.00014   18.8   0.0   12  152-163   141-152 (229)
 51 2ff7_A Alpha-hemolysin translo  46.5     8.2 0.00037   15.2   2.1   13  169-181   213-225 (247)
 52 2cbz_A Multidrug resistance-as  46.3     8.3 0.00037   15.2   2.1   16  205-220   195-210 (237)
 53 2pze_A Cystic fibrosis transme  45.7     8.6 0.00038   15.0   2.1   12  169-180   199-210 (229)
 54 1h95_A CSD, Y-box binding prot  45.1     9.7 0.00043   14.6   4.2   32  174-208    10-41  (79)
 55 2d2e_A SUFC protein; ABC-ATPas  44.7     9.1 0.00041   14.8   2.1   32  188-220   195-226 (250)
 56 3cam_A Cold-shock domain famil  44.7     9.9 0.00044   14.5   3.1   48  173-225     2-50  (67)
 57 2a6h_D DNA-directed RNA polyme  44.6     9.9 0.00044   14.5   6.2   55  167-224  1271-1326(1524)
 58 1v8q_A TT0826; structural geno  44.4     9.4 0.00042   14.7   2.1   30  149-182    43-72  (85)
 59 2ftc_O L27MT, MRP-L27, mitocho  43.0     8.7 0.00039   15.0   1.8   27  149-179    43-69  (69)
 60 2qf7_A Pyruvate carboxylase pr  42.8      10 0.00046   14.3   6.7   59  168-227  1097-1164(1165)
 61 1iyu_A E2P, dihydrolipoamide a  42.2      11 0.00047   14.3   5.6   39  191-230    34-76  (79)
 62 2ixe_A Antigen peptide transpo  40.3      11  0.0005   14.0   2.0   30  189-221   210-239 (271)
 63 1l2t_A Hypothetical ABC transp  40.3      11  0.0005   14.0   2.1   19  168-186   214-232 (235)
 64 2bbs_A Cystic fibrosis transme  39.6      12 0.00051   14.0   2.1   17  204-220   224-240 (290)
 65 2ghi_A Transport protein; mult  39.5      12 0.00052   13.9   2.0   13  169-181   223-235 (260)
 66 1mv5_A LMRA, multidrug resista  39.1      12 0.00052   13.9   2.0   31  188-221   190-220 (243)
 67 1b0u_A Histidine permease; ABC  38.6      12 0.00053   13.8   2.1   13  169-181   223-235 (262)
 68 2f4n_A Hypothetical protein MJ  37.5      12 0.00055   13.7   2.9   13  219-231   227-239 (273)
 69 2qi9_C Vitamin B12 import ATP-  37.4      12 0.00055   13.7   2.1   14  169-182   203-216 (249)
 70 3bk7_A ABC transporter ATP-bin  37.3      12 0.00055   13.7   3.0   17  216-232   378-394 (607)
 71 1n8i_A Probable malate synthas  36.6      13 0.00057   13.6   1.8   49  218-277   213-261 (741)
 72 2kcm_A Cold shock domain famil  36.4      13 0.00057   13.6   3.8   46  174-225     2-49  (74)
 73 2yz2_A Putative ABC transporte  35.6      13 0.00058   13.5   2.0   15  206-220   206-220 (266)
 74 1g6h_A High-affinity branched-  35.5      13 0.00059   13.5   2.1   13  169-181   223-235 (257)
 75 3gd7_A Fusion complex of cysti  34.8      13  0.0006   13.4   2.1   44  174-218   320-363 (390)
 76 2zjr_T 50S ribosomal protein L  33.6      14 0.00062   13.2   3.2   30  149-182    43-72  (91)
 77 3g5u_A MCG1178, multidrug resi  32.7      14 0.00064   13.1   2.1   18  215-232  1054-1071(1284)
 78 3gfo_A Cobalt import ATP-bindi  31.9      15 0.00066   13.0   2.1   15  168-182   213-227 (275)
 79 2olj_A Amino acid ABC transpor  30.8      15 0.00068   12.9   2.0   13  169-181   229-241 (263)
 80 1ok0_A Tendamistat, alpha-amyl  30.5      16 0.00069   12.8   3.2   58  129-188     7-66  (74)
 81 2nwu_A UPF0201 protein SSO1042  30.4      16 0.00069   12.8   2.0   11  260-270   120-130 (155)
 82 3dhw_C Methionine import ATP-b  30.1      16  0.0007   12.8   2.2   11  264-274   326-336 (343)
 83 1x65_A UNR protein; cell-free   29.8      13 0.00057   13.6   0.9   43  175-225    11-53  (89)
 84 2hyd_A ABC transporter homolog  29.3      16 0.00072   12.7   2.1   39  215-253   362-403 (578)
 85 1ji0_A ABC transporter; ATP bi  28.6      17 0.00074   12.6   2.1   13  169-181   209-221 (240)
 86 2j9i_A Glutamate-ammonia ligas  28.5      13  0.0006   13.4   0.8   13  241-253   229-241 (421)
 87 2bvc_A Glutamine synthetase 1;  28.3      15 0.00065   13.1   1.0   13  241-253   282-294 (486)
 88 2pcj_A ABC transporter, lipopr  28.2      17 0.00075   12.6   2.2   11  169-179   209-219 (224)
 89 3a0j_A Cold shock protein; OB-  28.0      17 0.00075   12.5   3.8   48  173-226     2-50  (73)
 90 2r9q_A AGR_C_764P, 2'-deoxycyt  26.8      18 0.00079   12.4   2.4   45  172-217   286-332 (370)
 91 2ihy_A ABC transporter, ATP-bi  26.5      18  0.0008   12.3   2.1   32  168-199   232-273 (279)
 92 3lkw_A Fusion protein of nonst  25.3      19 0.00083   12.2   3.0   11  218-228   192-202 (236)
 93 2qam_W 50S ribosomal protein L  24.8      11  0.0005   14.0  -0.1   31  148-182    41-71  (84)
 94 2fom_B Polyprotein; flavivirus  24.8      19 0.00085   12.1   2.8   10  219-228   143-152 (185)
 95 2bum_A Protocatechuate 3,4-dio  24.7      19 0.00085   12.1   1.4   13  241-253   132-144 (209)
 96 2zu0_C Probable ATP-dependent   24.2      19 0.00087   12.0   2.0   32  189-221   217-248 (267)
 97 1oxx_K GLCV, glucose, ABC tran  24.1      19 0.00087   12.0   1.8   46  170-218   294-339 (353)
 98 1hpc_A H protein of the glycin  23.5      20 0.00089   11.9   3.0   21  212-232    45-65  (131)
 99 3k3s_A Altronate hydrolase; st  23.3      20  0.0009   11.9   2.7   29  210-246    69-98  (105)
100 2fp7_B Polyprotein; flavivirus  22.3      21 0.00093   11.7   2.6   10  219-228   128-137 (172)
101 2cqo_A Nucleolar protein of 40  22.2      19 0.00084   12.1   0.6   49  169-225    22-81  (119)
102 1hqm_D DNA-directed RNA polyme  22.1     5.1 0.00022   17.1  -2.3   53  168-223  1013-1066(1265)
103 1f52_A Glutamine synthetase; A  22.1      21 0.00094   11.7   1.0   13  241-253   267-279 (468)
104 3d31_A Sulfate/molybdate ABC t  22.0      21 0.00094   11.7   2.0   27  170-197   288-314 (348)
105 3b60_A Lipid A export ATP-bind  21.9      21 0.00095   11.7   2.3   53  213-266   362-417 (582)
106 1vpl_A ABC transporter, ATP-bi  21.7      21 0.00096   11.6   2.0   13  169-181   216-228 (256)
107 2ytv_A Cold shock domain-conta  21.6      22 0.00096   11.6   2.2   44  174-225    10-54  (79)
108 3d4r_A Domain of unknown funct  21.6      22 0.00096   11.6   2.0   42  188-230    92-134 (169)
109 2yyz_A Sugar ABC transporter,   21.6      22 0.00096   11.6   2.0   42  174-218   297-339 (359)
110 3e90_B NS3 protease; trypsin-l  21.5      22 0.00096   11.6   3.2   11  166-177   140-150 (198)
111 2jra_A Protein RPA2121; domain  21.2      22 0.00098   11.6   2.0   28  174-201    28-55  (67)
112 1z47_A CYSA, putative ABC-tran  21.2      22 0.00098   11.5   2.2   42  174-217   300-343 (355)
113 2oik_A Histidine triad (HIT) p  20.9      22 0.00099   11.5   3.4   15  241-255    94-108 (154)
114 3bbo_X Ribosomal protein L27;   20.8      13 0.00056   13.6  -0.5   31  148-182    99-129 (198)
115 3fvq_A Fe(3+) IONS import ATP-  20.5      23   0.001   11.4   2.2   55  173-230   295-352 (359)
116 1g6p_A Cold shock protein TMCS  20.4      23   0.001   11.4   3.3   46  174-225     2-48  (66)
117 3pcg_M Protocatechuate 3,4-dio  20.1      23   0.001   11.4   1.3   25  172-196    79-103 (238)

No 1  
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=100.00  E-value=2.1e-33  Score=304.85  Aligned_cols=123  Identities=24%  Similarity=0.222  Sum_probs=113.8

Q ss_pred             CCCCCCC---CEEEECCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEE
Q ss_conf             5557775---3278567887-78766874444204702667988888778767868999752389835999980897699
Q T0608           125 QSLDDTE---DKISYVDSWM-FERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYF  200 (279)
Q Consensus       125 ~~~~p~~---g~iss~fg~r-~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T  200 (279)
                      ...||+.   ++++|+||+| .+|+.+..++|.||||+|+.||    ||+|++||+|+++||.++|||+|+|+|++||.|
T Consensus       201 ~~~~P~~~~~~risS~f~~~~~~~~~~~~~~H~GiDiaa~~Gt----pV~A~~~G~V~~ag~~~gyG~~V~I~H~~g~~T  276 (361)
T 2gu1_A          201 FNRYPVDKAYRQITSGFNPKRKHPVTGRVVPHNGTDFATPIGA----PVYSTGDGKVIVVRKHPYAGNYLVIEHNSVYKT  276 (361)
T ss_dssp             CCSCSSCGGGCCEEECCBTTCBCTTTCCBCCBCSEEECCCTTC----EEECSSSEEEEEEEEETTTEEEEEEECSSSEEE
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC----EEEEECCCEEEEEEECCCCCCEEEEECCCCEEE
T ss_conf             3321011344433354565434333565323554588558997----404042744689860489788699982998599


Q ss_pred             EEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH
Q ss_conf             975126655246887860672687430653446777788897225899981788863217089
Q T0608           201 YYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYP  263 (279)
Q Consensus       201 ~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~  263 (279)
                      +||||++++ |++||.|++||+||+|||||+||       ||||||||+.+|    .||||+-
T Consensus       277 ~YaHls~~~-V~~G~~V~~Gq~Ig~vG~TG~st-------gphLHFEir~~g----~~vdPl~  327 (361)
T 2gu1_A          277 RYLHLDKIL-VKKGQLVKRGQKIALAGATGRLT-------GPHLHFEVLVRN----RPVDAMK  327 (361)
T ss_dssp             EEEEESEEC-CCTTCEECTTCEEEECCCCSSCS-------SCCEEEEEEETT----EEECTTC
T ss_pred             EEECCCCEE-ECCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECC----EECCCCC
T ss_conf             996543120-08899999899999876898878-------867899999899----7969972


No 2  
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=99.97  E-value=1.4e-30  Score=280.54  Aligned_cols=131  Identities=20%  Similarity=0.227  Sum_probs=122.8

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf             65557775327856788778766874444204702667988888778767868999752389835999980897699975
Q T0608           124 PQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA  203 (279)
Q Consensus       124 ~~~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~  203 (279)
                      ..+.||+.|++++.||.++++..+.+++|.||||+++.||    ||+|++||+|+++++...+||+|+|+||+||.|+|+
T Consensus       152 ~~~~~Pv~G~v~~~fG~~~~~~~~~~~~h~GiDi~~~~Gt----~V~A~~~G~V~~~~~~~~~g~~V~i~hg~g~~t~Y~  227 (282)
T 2hsi_A          152 LMLDKPVDGPLSSPFGLRRFFNGEERNPHSGLDFAVPAGT----PIKAPAAGKVILIGDYFFNGKTVFVDHGQGFISMFC  227 (282)
T ss_dssp             SSCCCSSSSCBCSCC------------CCCSEEECCCTTC----EEECSSCEEEEEEEEETTTEEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCC----CCCCEECEEEEEECCCCCCCCEEEEECCCCEEEEEC
T ss_conf             6665885388879989848888776766421698448998----423312449997435465880999987997699965


Q ss_pred             ECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHC
Q ss_conf             1266552468878606726874306534467777888972258999817888632170899988622
Q T0608           204 HLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAEN  270 (279)
Q Consensus       204 HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~  270 (279)
                      ||+++ .|++||.|++||+||.||+||++|       ||||||||+.++    .+|||..||.-++|
T Consensus       228 hLs~i-~V~~G~~V~~G~~IG~vG~tG~~t-------gphLHfev~~~g----~~vdP~~~l~~~~p  282 (282)
T 2hsi_A          228 HLSKI-DVKLGQQVPRGGVLGKVGATGRAT-------GPHMHWNVSLND----ARVDPAIFIGAFQP  282 (282)
T ss_dssp             EESEE-CSCTTCEECTTCEEEECCCTTTCS-------SCCEEEEEEETT----EEECHHHHHTCCC-
T ss_pred             CCCCC-CCCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECC----EEECHHHHHCCCCC
T ss_conf             74703-638799999899799845899999-------867999999899----99896997671598


No 3  
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=99.95  E-value=1.7e-27  Score=254.02  Aligned_cols=126  Identities=29%  Similarity=0.448  Sum_probs=112.4

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEEC-CCCCEEEEEEECCC-EEEE
Q ss_conf             655577753278567887787668744442047026679888887787678689997523-89835999980897-6999
Q T0608           124 PQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWL-EKGGWRIGITAPTG-AYFY  201 (279)
Q Consensus       124 ~~~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~-~~yGn~ViI~Hg~G-~~T~  201 (279)
                      ....||+.|.++++||..+     ...+|.||||+++.||    ||+|++||+|+++++. .+||++|+|+|+++ +.++
T Consensus       162 ~~~~wp~~g~~~~~fG~~r-----gG~~H~GIDi~a~~Gt----pV~A~~dG~Vv~~g~~~~g~G~~ViI~h~~g~~~t~  232 (291)
T 1qwy_A          162 KDASWLTSRKQLQPYGQYH-----GGGAHYGVDYAMPENS----PVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQW  232 (291)
T ss_dssp             SSCHHHHTSCEEECSEECT-----TSSEECSEEEECCTTC----EEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCC----EEEECCCEEEEEEEECCCCCCEEEEEEECCCCEEEE
T ss_conf             7420566786558868889-----7996583885889999----698012879999887467898699998489988999


Q ss_pred             EEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf             75126655246887860672687430653446777788897225899981788863217089998
Q T0608           202 YAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLR  266 (279)
Q Consensus       202 Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~  266 (279)
                      |+||+++ .|++||.|++||+||+||+||+|+       ||||||||+..+.....+|||++||+
T Consensus       233 Y~HL~~i-~Vk~Gq~V~~Gq~IG~vG~TG~st-------gpHLHFEI~~~g~~~~~~VDP~~~L~  289 (291)
T 1qwy_A          233 YMHNNRL-TVSAGDKVKAGDQIAYSGSTGNST-------APHVHFQRMSGGIGNQYAVDPTSYLQ  289 (291)
T ss_dssp             EEEESEE-CCCTTCEECTTCEEEECCCCSSCS-------SSEEEEEEEESEESGGGEECCHHHHC
T ss_pred             EEECCCC-CCCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECCCCCCEECCCHHHHH
T ss_conf             7878825-668889999789999868889989-------86689999989917987728699701


No 4  
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=99.83  E-value=3.6e-20  Score=190.84  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             CCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCC---CEEEEEEECCCEEE----EEE
Q ss_conf             53278567887787668744442047026679888887787678689997523898---35999980897699----975
Q T0608           131 EDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKG---GWRIGITAPTGAYF----YYA  203 (279)
Q Consensus       131 ~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~y---Gn~ViI~Hg~G~~T----~Y~  203 (279)
                      ..++++.|+        ..+.|.|+|+....|...++||+|++||+|+++++..+|   |++|+|.|.+|..+    +|+
T Consensus       175 ~~~~~~~~~--------~~~~h~g~d~~d~~~~~~~~pv~A~~~G~V~~~~~~~~~~~~g~~~~i~~~~g~~~~~~~~~~  246 (334)
T 3csq_A          175 IINISQGEN--------GSFSHKGTLCIDFVGKTEKYPYYAPCDCTCVWRGDASAYLAWTSDKEVMCADGSVRYITWVNV  246 (334)
T ss_dssp             EEEEEECTT--------CTTTCTTSCCEEECCSSSSCEEECSSSEEEEEEETTTTEEEEEESSCEECTTSCEECEEEEEE
T ss_pred             CCEEECCCC--------CCCCCCCEEEEECCCCCCCCEEEECCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf             827960899--------998758856441169999971997899799998636776543776999967998579999999


Q ss_pred             ECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             12665524688786067268743065344677778889722589998178
Q T0608           204 HLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEG  253 (279)
Q Consensus       204 HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~  253 (279)
                      ||+++ .|++||.|++||+||+||+||+||       ||||||||+....
T Consensus       247 h~~~~-~v~~G~~V~~G~~ig~~G~tG~st-------gpHlHfev~~~~~  288 (334)
T 3csq_A          247 HESPL-PFDVGKKLKKGDLMGHTGIGGNVT-------GDHWHFNVIDGKE  288 (334)
T ss_dssp             CCSSC-CCCTTCEECTTSEEEECBCCC-----------CBEEEEEEESSC
T ss_pred             ECCCC-CCCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECCC
T ss_conf             45625-689969978999899523898999-------9658999998981


No 5  
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=99.81  E-value=3.8e-19  Score=181.94  Aligned_cols=105  Identities=23%  Similarity=0.302  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCCCEEECCCCCC--CCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEC
Q ss_conf             7876687444420470266798--88887787678689997523898359999808976999751266552468878606
Q T0608           142 FERNYGGKRGHEGTDIMAEKNT--PGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKA  219 (279)
Q Consensus       142 ~~p~~g~~~~H~GiDiaa~~GT--~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~  219 (279)
                      .++.++....|.|+|+.....+  ..+.||+|++||+|++++     |++|+|+|++|+.|+|+||+++ .|++||.|++
T Consensus        22 ~~~~~g~g~~~~g~d~~~g~~~~a~~g~~V~A~~~G~V~~~~-----g~~V~I~H~~G~~t~Y~Hl~~~-~V~~Gq~V~~   95 (182)
T 3it5_A           22 AHSNTGSGYPYSSFDASYDWPRWGSATYSVVAAHAGTVRVLS-----RCQVRVTHPSGWATNYYHMDQI-QVSNGQQVSA   95 (182)
T ss_dssp             CBCTTSSSSSCCEEEEESSCCCTTSCCCEEECSSSEEEEEEE-----TTEEEEECTTSEEEEEESEESC-CCCTTCEECT
T ss_pred             CCCCCCCCCCCCCEEECCCCCEECCCCCEEEEEECCEEEEEC-----CEEEEEEECCCCCCCEECCEEC-CCCCCCCCCC
T ss_conf             655089788418886068986471799959997656577852-----7899997288346446413003-3126744148


Q ss_pred             CCEEEEEE--------CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH
Q ss_conf             72687430--------653446777788897225899981788863217089
Q T0608           220 GDLLGYMG--------DSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYP  263 (279)
Q Consensus       220 Ge~IG~vG--------~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~  263 (279)
                      ||+||.+|        +||+||       ||||||||+.++    ++|||..
T Consensus        96 Gq~IG~~g~~~~~~~g~tG~st-------gpHLHfei~~~g----~~v~~~~  136 (182)
T 3it5_A           96 DTKLGVYAGNINTALCEGGSST-------GPHLHFSLLYNG----AFVSLQG  136 (182)
T ss_dssp             TCEEEEECSSHHHHTTTSCCCS-------SSCEEEEEEETT----EECCCTT
T ss_pred             CCEEEEECCCCCCCCCCCCCCC-------CCEEEEEEEECC----EEECCCC
T ss_conf             8388671476665315777768-------867899999899----8969998


No 6  
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=96.55  E-value=0.0011  Score=48.67  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=62.2

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC
Q ss_conf             55777532785678877876687444420470266798888877876786899975238983599998089769997512
Q T0608           126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL  205 (279)
Q Consensus       126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL  205 (279)
                      ..-|.+|.+.. -..-.+|.+...-+=.|+-|....|.     |+|+.||+|...-+   .+..+.|...+|..- .-|+
T Consensus        10 v~aP~~G~vi~-l~~v~D~vFs~~~~G~G~aI~P~~~~-----v~AP~~G~I~~i~~---t~HAi~i~~~~G~ei-LiHi   79 (154)
T 2gpr_A           10 VLAPCDGTIIT-LDEVEDEVFKERMLGDGFAINPKSND-----FHAPVSGKLVTAFP---TKHAFGIQTKSGVEI-LLHI   79 (154)
T ss_dssp             EECSSSEEEEC-GGGSSCHHHHTTSSCEEEEEEESSSE-----EECSSCEEEEECCT---TCSEEEEECTTSCEE-EEEC
T ss_pred             EEECCCCEEEE-CCCCCCHHHCCCCCCCEEEEECCCCE-----EECCCCEEEEEECC---CCCEEEEECCCCCEE-EEEE
T ss_conf             99647737988-56298737456881052999827997-----98367849999878---996999991999899-9997


Q ss_pred             C--C-------C-CCCCCCCEEECCCEEEEEEC
Q ss_conf             6--6-------5-52468878606726874306
Q T0608           206 D--S-------Y-AELEKGDPVKAGDLLGYMGD  228 (279)
Q Consensus       206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~  228 (279)
                      -  .       + ..|++||.|++||.|..+=-
T Consensus        80 GidTv~L~G~gF~~~vk~Gd~V~~G~~L~~~D~  112 (154)
T 2gpr_A           80 GLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             SSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EECCCCCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf             322112589744999828999908999999859


No 7  
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=96.37  E-value=0.012  Score=39.57  Aligned_cols=93  Identities=18%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC
Q ss_conf             55777532785678877876687444420470266798888877876786899975238983599998089769997512
Q T0608           126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL  205 (279)
Q Consensus       126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL  205 (279)
                      ..-|..|.+.. -..-.+|.+...-+=.|+-|....|+     |+|+.||+|...-+   .+..+-|...+|..- .-|+
T Consensus        15 v~aP~~G~vi~-L~~V~D~vFs~~~mG~G~AI~P~~~~-----v~AP~dG~I~~v~~---T~HAigi~t~~G~ei-LIHi   84 (161)
T 1f3z_A           15 IIAPLSGEIVN-IEDVPDVVFAEKIVGDGIAIKPTGNK-----MVAPVDGTIGKIFE---TNHAFSIESDSGVEL-FVHF   84 (161)
T ss_dssp             EECSSCEEEEE-GGGSSSHHHHTTSSCEEEEEEECSSE-----EECSSSEEEEEECT---TSSEEEEEETTSCEE-EEEC
T ss_pred             EEECCCCEEEE-CCCCCCHHHHCCCCCCEEEEECCCCE-----EEECCCEEEEEECC---CCCEEEEEECCCCEE-EEEE
T ss_conf             99516727988-34198958807882275999836998-----99289979999867---896999993998799-9996


Q ss_pred             C--C-------C-CCCCCCCEEECCCEEEEEEC
Q ss_conf             6--6-------5-52468878606726874306
Q T0608           206 D--S-------Y-AELEKGDPVKAGDLLGYMGD  228 (279)
Q Consensus       206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~  228 (279)
                      -  .       + ..|++||.|++||.|..+=-
T Consensus        85 GiDTV~L~G~gF~~~vk~Gd~V~~G~~L~~~D~  117 (161)
T 1f3z_A           85 GIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             SBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             CCCHHHCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf             636543289643899738999989999999869


No 8  
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=96.36  E-value=0.0095  Score=40.58  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=64.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC
Q ss_conf             55777532785678877876687444420470266798888877876786899975238983599998089769997512
Q T0608           126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL  205 (279)
Q Consensus       126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL  205 (279)
                      ..-|..|.+.. -..-.+|.+..+-+=.|+=|....|+     |+|+.||+|...-.   .+..+.|...+|..- .-|+
T Consensus        15 i~aP~~G~vi~-L~~V~D~vFs~k~~G~GvAI~P~~~~-----v~AP~~G~V~~v~~---T~HAigi~t~~G~ev-LiHi   84 (162)
T 1ax3_A           15 FVSPITGEIHP-ITDVPDQVFSGKMMGDGFAILPSEGI-----VVSPVRGKILNVFP---TKHAIGLQSDGGREI-LIHF   84 (162)
T ss_dssp             CCCCCSEEEEE-GGGSSSHHHHTCTTSEEEEEEECSSE-----EEESCCEEEEECCS---SSSEEEEESSSSCEE-EEEC
T ss_pred             EEECCCCEEEE-CCCCCCHHHCCCCCCCCEEEECCCCE-----EECCCCEEEEEECC---CCCEEEEECCCCCEE-EEEE
T ss_conf             99558857988-24097746446780372899908995-----98278949999857---997999991999799-9998


Q ss_pred             --CC-------C-CCCCCCCEEECCCEEEEEEC
Q ss_conf             --66-------5-52468878606726874306
Q T0608           206 --DS-------Y-AELEKGDPVKAGDLLGYMGD  228 (279)
Q Consensus       206 --~~-------i-~~V~~G~~V~~Ge~IG~vG~  228 (279)
                        +.       + ..|++||.|++||+|..+=-
T Consensus        85 GiDTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~  117 (162)
T 1ax3_A           85 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             SSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred             CCCHHCCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf             204300389613899758899978999999869


No 9  
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=96.09  E-value=0.015  Score=38.76  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=48.5

Q ss_pred             CCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE--ECCCCCCCCCCCEEECCCEEEEEECC
Q ss_conf             88778767868999752389835999980897699975--12665524688786067268743065
Q T0608           166 YYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA--HLDSYAELEKGDPVKAGDLLGYMGDS  229 (279)
Q Consensus       166 ~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~--HL~~i~~V~~G~~V~~Ge~IG~vG~T  229 (279)
                      ...+.|.++|+|.........|..|+|...+|-...|.  .-.+ +.|++||.|++||.|-.==|-
T Consensus       169 Nnv~~AsaaGtVs~I~~~EKGg~~ItI~teDGe~ve~~IP~Gp~-LiVsEGD~VkAGQpLTnnPNv  233 (249)
T 1ci3_M          169 NAVYNASAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPE-LIVSEGEEVAAGAALTNNPNV  233 (249)
T ss_dssp             SSCCBCSSCEEEEEEEECTTSCEEEEEECTTSCEEEEEECSSSC-BCCCTTCEECTTCBSBCCCCC
T ss_pred             CCEEECCCCEEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCC-EEECCCCEECCCCCCCCCCCC
T ss_conf             86385102569988686588978999989999798996689980-377589998389802359975


No 10 
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=95.62  E-value=0.029  Score=36.35  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CEEECCCCEEEEEEE--CCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE---EEECCCCC
Q ss_conf             778767868999752--389835999980897699975-126655246887860672687---43065344
Q T0608           168 PVVSMTDGVVTEKGW--LEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG---YMGDSGYG  232 (279)
Q Consensus       168 PV~A~~dG~V~~a~~--~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG---~vG~TG~s  232 (279)
                      .+.|..+|+|.+...  ....|..|+|...+|-.+.|. .....+.|++||.|++||.|-   .||--|..
T Consensus       170 a~~AsvaGtIs~I~~~~~ekG~~~I~I~~~dG~~v~~~IP~G~~LiV~eGD~VkaGqpLTn~Pnvggfgq~  240 (292)
T 1q90_A          170 IYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLTNNPNVGGFGQA  240 (292)
T ss_dssp             CCBCSSSEEEEEEEECCTTTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBSBCCCCCCEEEEE
T ss_pred             EEECCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             48367874998820211678858999988999889997489997897689998389803469976775666


No 11 
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=94.87  E-value=0.045  Score=34.77  Aligned_cols=57  Identities=21%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             CCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC--CCCCCCCCCCEEECCCEEEE
Q ss_conf             877876786899975238983599998089769997512--66552468878606726874
Q T0608           167 YPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL--DSYAELEKGDPVKAGDLLGY  225 (279)
Q Consensus       167 ~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL--~~i~~V~~G~~V~~Ge~IG~  225 (279)
                      ..+.|.++|+|.+.... ..|..|+|.-.+|-...|.=-  .+ +.|++||.|++||.|=.
T Consensus       171 na~~Ae~aGtVs~Iee~-kgg~~IiItt~DGe~v~y~IP~G~~-LiV~EGD~VkaGqpLTd  229 (249)
T 2jxm_B          171 NAFSASIAGTIAAIEDN-GFGFDVTIQPEDGDAVVTSILPGPE-LIVAVGDTVEAGQLLTT  229 (249)
T ss_dssp             SCCBCSSCEEEEEECCS-SSEEEEEEECTTSCCEEEEECSSSC-BCCCTTCEECTTCBSBC
T ss_pred             CEEECCCCEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCE-EEECCCCEEECCCCCCC
T ss_conf             63853156699887877-9967999999999899997289983-68778999828985144


No 12 
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=91.59  E-value=0.1  Score=31.63  Aligned_cols=64  Identities=22%  Similarity=0.375  Sum_probs=40.6

Q ss_pred             CCCCCEEECCCCEEEEEEECCC----------CC--EEEEEEEC------------------CCE----------EEEEE
Q ss_conf             8888778767868999752389----------83--59999808------------------976----------99975
Q T0608           164 PGYYPVVSMTDGVVTEKGWLEK----------GG--WRIGITAP------------------TGA----------YFYYA  203 (279)
Q Consensus       164 ~~~~PV~A~~dG~V~~a~~~~~----------yG--n~ViI~Hg------------------~G~----------~T~Y~  203 (279)
                      .-..||.|-.+|+|.|.+-..|          .|  ..|++++.                  +|-          .+.+.
T Consensus        83 P~~~pIisE~~G~v~f~Di~egvT~~e~~De~TG~~~~viie~~~~~~~~~~l~P~I~I~d~~g~~~~~~~~~~~~~Y~l  162 (190)
T 2auk_A           83 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL  162 (190)
T ss_dssp             SSEEEEECSSCEEEEEESCCBTTTEEEEECTTTCCEEEEECCTTTSCSTTTTCCCEEEEECTTSCBCBCTTSSCBCEEEC
T ss_pred             CCCCEEEEECCCEEEEEEEEECEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCEEEEC
T ss_conf             66417887216658999974031588987247891689985153455555566846999857897277159996189977


Q ss_pred             ECCCCCCCCCCCEEECCCEEEEEE
Q ss_conf             126655246887860672687430
Q T0608           204 HLDSYAELEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       204 HL~~i~~V~~G~~V~~Ge~IG~vG  227 (279)
                      -...++.|+.||.|++||+||.+=
T Consensus       163 P~ga~l~V~dg~~V~~GdvlAkiP  186 (190)
T 2auk_A          163 PGKAIVQLEDGVQISSGDTLARIP  186 (190)
T ss_dssp             CTTCEESSCTTCEECTTCEEEEEE
T ss_pred             CCCEEEEECCCCEECCCCEEEECC
T ss_conf             999699983989983888999885


No 13 
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=91.17  E-value=0.4  Score=26.53  Aligned_cols=63  Identities=21%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             CCCEEECCCCEEEEEEECCCCCEEEEEE-ECCCE---EEEEEECCCCCCCCCCCEEECCCEEEEEECCC
Q ss_conf             8877876786899975238983599998-08976---99975126655246887860672687430653
Q T0608           166 YYPVVSMTDGVVTEKGWLEKGGWRIGIT-APTGA---YFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       166 ~~PV~A~~dG~V~~a~~~~~yGn~ViI~-Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      .....|.+.|++.........|..|.|. -.+|-   .++=+.+ ++ .|++||.|++||.|-.==|-|
T Consensus       168 Nn~~~as~aG~I~~I~~~e~g~~~v~i~~~~~g~~v~e~IP~Gp-~l-iV~~G~~v~a~qpLT~dPNVG  234 (252)
T 1hcz_A          168 NTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGL-EL-LVSEGESIKLDQPLTSNPNVG  234 (252)
T ss_dssp             SSCCBCSSCEEEEEEEECTTSCEEEEEEETTTTEEEEEEECTTC-CB-CCCTTCEECTTCBSBCCCCCC
T ss_pred             CCEEECCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCC-EE-EECCCCEEECCCCCCCCCCCC
T ss_conf             72482567707888676688856999995699967888159998-58-882898884698555699866


No 14 
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=90.49  E-value=0.59  Score=25.12  Aligned_cols=62  Identities=19%  Similarity=0.198  Sum_probs=46.4

Q ss_pred             CCEEECCCCEEEEEEE--CCCCCEEEEEEECCCE---EEEEEECCCCCCCCCCCEEECCCEEEEEECCC
Q ss_conf             8778767868999752--3898359999808976---99975126655246887860672687430653
Q T0608           167 YPVVSMTDGVVTEKGW--LEKGGWRIGITAPTGA---YFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       167 ~PV~A~~dG~V~~a~~--~~~yGn~ViI~Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      ....|.+.|+|.....  ....|..|.|+..+|-   .++-+.. ++ .|++||.|++||.|-.==|-|
T Consensus       169 ~~~~as~~G~I~~I~~~~~~~gg~~v~I~~~~G~~v~~~iP~Gp-~l-iV~eG~~v~~~qpLT~nPNVG  235 (251)
T 1e2w_A          169 TIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGP-DL-IVKEGQTVQADQPLTNNPNVG  235 (251)
T ss_dssp             SCCBCSSCEEEEEEEESSSSSCCEEEEEECTTSCEEEEEECSSS-CB-CCCTTCEECTTCBCBCCCCCC
T ss_pred             CEECCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCC-EE-EECCCCEEECCCCCCCCCCCC
T ss_conf             24536676278887752267885799998689989878428998-58-860798785698455699856


No 15 
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=88.06  E-value=0.6  Score=25.05  Aligned_cols=56  Identities=11%  Similarity=0.150  Sum_probs=30.7

Q ss_pred             EEECCCCEEEEEEE---CCCCCEEEEEEECCCEEEE----------EE-EC-CCCCCCCCCCEEECCCEEEEE
Q ss_conf             78767868999752---3898359999808976999----------75-12-665524688786067268743
Q T0608           169 VVSMTDGVVTEKGW---LEKGGWRIGITAPTGAYFY----------YA-HL-DSYAELEKGDPVKAGDLLGYM  226 (279)
Q Consensus       169 V~A~~dG~V~~a~~---~~~yGn~ViI~Hg~G~~T~----------Y~-HL-~~i~~V~~G~~V~~Ge~IG~v  226 (279)
                      |.|-.+|+|.|..-   ...-|+.|++. -+|...+          |- -. +. +.|+.||.|++||+|+.-
T Consensus        11 i~~k~~G~Vkf~nl~~V~n~~G~~Iv~s-R~g~i~I~d~~G~e~e~y~ipyGa~-L~VkdG~~Vk~G~~laeW   81 (190)
T 2auk_A           11 IQVKNKGSIKLSNVKSVVNSSGKLVITS-RNTELKLIDEFGRTKESYKVPYGAV-LAKGDGEQVAGGETVANW   81 (190)
T ss_dssp             EECCSSEEEEEESCCEEECTTSCEEECC-SSCEEEEECTTSCEEEEEECCTTCE-ESSCTTCEECTTCEEEEC
T ss_pred             EEECCCEEEEEEEEEEEECCCCCEEEEE-CCCEEEEEECCCCEEEEEECCCCCE-EEECCCCEEEECEEEEEE
T ss_conf             8981162999975179998999899993-4508999904883899976587618-998279787602048981


No 16 
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=82.00  E-value=2.1  Score=20.29  Aligned_cols=59  Identities=20%  Similarity=0.098  Sum_probs=34.6

Q ss_pred             CEEECCCCEEEEEEECCC-----CCEEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE
Q ss_conf             778767868999752389-----835999980897699975126----655246887860672687430
Q T0608           168 PVVSMTDGVVTEKGWLEK-----GGWRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~-----yGn~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG  227 (279)
                      -|.|+-.|+|....-..|     .--..+|+.-.-...+.+-.+    ++ .|+.||.|..||+|..+|
T Consensus        10 ~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~ies~K~~~~v~Ap~~G~V~~i-~v~~G~~V~~G~~L~~Ig   77 (77)
T 1dcz_A           10 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV-LVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             EEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEE-CCCTTCBCCBTSEEEEEC
T ss_pred             EEECCCCCEEEEEEECCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEE-EECCCCEECCCCEEEEEC
T ss_conf             69899781999999379999927973999995154389977899899999-819959979999999949


No 17 
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=81.58  E-value=2.2  Score=20.18  Aligned_cols=58  Identities=19%  Similarity=0.075  Sum_probs=33.4

Q ss_pred             EEECCCCEEEEEEEC-----CCCCEEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE
Q ss_conf             787678689997523-----89835999980897699975126----655246887860672687430
Q T0608           169 VVSMTDGVVTEKGWL-----EKGGWRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       169 V~A~~dG~V~~a~~~-----~~yGn~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG  227 (279)
                      |.|+-.|+|...--.     ...-..+.|..-.-...+.+..+    ++ .|+.||.|..||+|...|
T Consensus         8 v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEs~K~~~~v~ap~~G~v~~i-~v~~G~~V~~G~~L~~Ig   74 (74)
T 2d5d_A            8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI-LVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             EECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEE-CCCTTCEECTTCEEEEEC
T ss_pred             EECCCCCEEEEEECCCCCEEECCCEEEEEECCCCCEEEECCCCEEEEEE-EECCCCEECCCCEEEEEC
T ss_conf             9789998899999489999969988999984787538863778899899-968989989999999939


No 18 
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=77.81  E-value=0.89  Score=23.55  Aligned_cols=52  Identities=23%  Similarity=0.173  Sum_probs=40.7

Q ss_pred             CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEEC
Q ss_conf             7787678689997523--------8983599---99808976999751266552468878606726874306
Q T0608           168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGD  228 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~  228 (279)
                      +|+|..+|.|...+..        -|.|...   .|||+-|+.        + .++.||+|++||+|..+=.
T Consensus       340 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~~~d~id~~~Gi~--------~-~~~~G~~V~~g~~l~~i~~  402 (436)
T 3h5q_A          340 EYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIV--------L-NKKIGDKVEEGESLLTIHS  402 (436)
T ss_dssp             EEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTSEEEEEEE
T ss_pred             EEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEEC
T ss_conf             8834888799995079999999983999788878888576858--------7-1579598679991899975


No 19 
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=76.99  E-value=1.1  Score=22.81  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=24.7

Q ss_pred             CEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEECCC-EEEEEECCC
Q ss_conf             778767868999752389835999980897699975126655246887860672-687430653
Q T0608           168 PVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD-LLGYMGDSG  230 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge-~IG~vG~TG  230 (279)
                      .|+|+.||+|                            .+. .+++|++|..|+ +|..+-+.-
T Consensus        69 ~I~AP~~G~V----------------------------~~~-~~~~G~~V~~g~~~l~~I~~~d  103 (116)
T 2k32_A           69 EIKAPFDGTI----------------------------GDA-LVNIGDYVSASTTELVRVTNLN  103 (116)
T ss_dssp             EEECSSSEEE----------------------------CCC-SCCTTCEECTTTSCCEEEECSC
T ss_pred             EEECCCCEEE----------------------------EEE-ECCCCCEECCCCCEEEEEECCC
T ss_conf             9988988799----------------------------989-8799998889995489997798


No 20 
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=74.36  E-value=2.1  Score=20.35  Aligned_cols=57  Identities=11%  Similarity=0.078  Sum_probs=28.1

Q ss_pred             CEEECCCCEEEEEEECCC----CCEEEEEEECCCE-EEEEEEC----CCCCCCCCCCEEECCCEEEE
Q ss_conf             778767868999752389----8359999808976-9997512----66552468878606726874
Q T0608           168 PVVSMTDGVVTEKGWLEK----GGWRIGITAPTGA-YFYYAHL----DSYAELEKGDPVKAGDLLGY  225 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~----yGn~ViI~Hg~G~-~T~Y~HL----~~i~~V~~G~~V~~Ge~IG~  225 (279)
                      +|-|+-.|.|+...-..|    -|..++|--.=-+ .++.+-.    .++ .|++||.|..||+|-.
T Consensus       651 ~v~Apm~G~v~~v~V~~Gd~V~~G~~l~v~EAMKME~~i~ap~~G~V~~i-~v~~g~~V~~gdlL~~  716 (718)
T 3bg3_A          651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKV-HVTKDMTLEGDDLILE  716 (718)
T ss_dssp             CEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCC-CCCSEEEECSSCEEEC
T ss_pred             CCCCCCCCEEEEEEECCCCEECCCCEEEEEEHHCCCCCCCCCCCCEEEEE-EECCCCEECCCCEEEE
T ss_conf             31489994379999799998799998999852027661048998089799-9789898789988999


No 21 
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=74.35  E-value=1.4  Score=21.99  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=9.3

Q ss_pred             CCCCCCEEECCCEEEE
Q ss_conf             2468878606726874
Q T0608           210 ELEKGDPVKAGDLLGY  225 (279)
Q Consensus       210 ~V~~G~~V~~Ge~IG~  225 (279)
                      .|+.||.|..||+|-.
T Consensus        63 ~v~~G~~V~~G~~L~~   78 (80)
T 1bdo_A           63 LVESGQPVEFDEPLVV   78 (80)
T ss_dssp             CSCTTCEECTTCEEEE
T ss_pred             EECCCCEECCCCEEEE
T ss_conf             8489799899999999


No 22 
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=72.79  E-value=1.6  Score=21.39  Aligned_cols=17  Identities=24%  Similarity=0.571  Sum_probs=9.7

Q ss_pred             CCCCCCEEECCCEEEEE
Q ss_conf             24688786067268743
Q T0608           210 ELEKGDPVKAGDLLGYM  226 (279)
Q Consensus       210 ~V~~G~~V~~Ge~IG~v  226 (279)
                      .|+.||.|++||+||.+
T Consensus       281 ~v~lG~~V~kGq~ig~I  297 (354)
T 3cdx_A          281 THYVGEEVRTGETAGWI  297 (354)
T ss_dssp             SCCTTCEECTTSEEEEE
T ss_pred             ECCCCCEECCCCEEEEE
T ss_conf             16889995899999999


No 23 
>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B}
Probab=72.63  E-value=2.4  Score=19.87  Aligned_cols=20  Identities=30%  Similarity=0.125  Sum_probs=17.0

Q ss_pred             CCCCCCEEECCCEEEEEECC
Q ss_conf             24688786067268743065
Q T0608           210 ELEKGDPVKAGDLLGYMGDS  229 (279)
Q Consensus       210 ~V~~G~~V~~Ge~IG~vG~T  229 (279)
                      .++.|+.|++||+||.+-+-
T Consensus       304 ~~~~G~~V~~G~~ig~I~d~  323 (368)
T 3fmc_A          304 LGKVGVPMKATDPLVNLLRL  323 (368)
T ss_dssp             CSCTTCCBCTTCEEEEEECG
T ss_pred             CCCCCCEECCCCEEEEEECC
T ss_conf             88997987799999999667


No 24 
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=72.12  E-value=2.4  Score=19.80  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCEEECCCEEEEEECCCCCCC
Q ss_conf             66552468878606726874306534467
Q T0608           206 DSYAELEKGDPVKAGDLLGYMGDSGYGEE  234 (279)
Q Consensus       206 ~~i~~V~~G~~V~~Ge~IG~vG~TG~st~  234 (279)
                      .++ .|+.||.|..|++|+.+..++-+..
T Consensus        51 ~~i-~v~~G~~V~~G~~l~~ie~~~~~~~   78 (85)
T 2k7v_A           51 KEL-KVNVGDKVKTGSLIMIFEVEGAAPA   78 (85)
T ss_dssp             CEE-CSCTTCCBCTTSEEEEEECCSSCCC
T ss_pred             EEE-EECCCCEECCCCEEEEEECCCCCCC
T ss_conf             899-8689799899999999975887788


No 25 
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=70.75  E-value=2  Score=20.53  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCEEECCCEEEEEE
Q ss_conf             6655246887860672687430
Q T0608           206 DSYAELEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       206 ~~i~~V~~G~~V~~Ge~IG~vG  227 (279)
                      .++ .+++||.|+.||+|+.+.
T Consensus        57 ~~i-~~~~Gd~v~~G~~l~~i~   77 (80)
T 1pmr_A           57 DAV-LEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             CBC-TTCTTCEECSSSEEEBCC
T ss_pred             EEE-EECCCCEECCCCEEEEEE
T ss_conf             999-778999988999999997


No 26 
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=69.95  E-value=2.1  Score=20.38  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=20.3

Q ss_pred             CCCCCCCCCCEEECCCEEEEEECCCC
Q ss_conf             66552468878606726874306534
Q T0608           206 DSYAELEKGDPVKAGDLLGYMGDSGY  231 (279)
Q Consensus       206 ~~i~~V~~G~~V~~Ge~IG~vG~TG~  231 (279)
                      .++ .|++||.|..||+|+.+-.+|-
T Consensus        55 ~~i-~v~~G~~v~~G~~l~~ie~~g~   79 (80)
T 1qjo_A           55 KEL-KVNVGDKVKTGSLIMIFEVEGA   79 (80)
T ss_dssp             EEC-CCCTTCEECTTCCCEEEESCCC
T ss_pred             EEE-EECCCCEECCCCEEEEEECCCC
T ss_conf             999-9589899589999999964658


No 27 
>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099}
Probab=69.43  E-value=2.1  Score=20.35  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=18.1

Q ss_pred             CCCCCCCEEECCCEEEEEECCC
Q ss_conf             5246887860672687430653
Q T0608           209 AELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       209 ~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      ..++.||.|++||+||.+-+.+
T Consensus       270 ~~~~~G~~V~~Gq~lg~I~~~~  291 (332)
T 2qj8_A          270 PRCSVMDEVEQGDVVGVLHPMG  291 (332)
T ss_dssp             ECSCTTCEECTTCEEEEEECTT
T ss_pred             EECCCCCEECCCCEEEEEECCC
T ss_conf             8178899977999899994787


No 28 
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=69.42  E-value=2  Score=20.51  Aligned_cols=40  Identities=15%  Similarity=0.243  Sum_probs=26.4

Q ss_pred             EEEECCCEEEEEEEC----CCCCCCCCCCEEECCCEEEEEECCCC
Q ss_conf             998089769997512----66552468878606726874306534
Q T0608           191 GITAPTGAYFYYAHL----DSYAELEKGDPVKAGDLLGYMGDSGY  231 (279)
Q Consensus       191 iI~Hg~G~~T~Y~HL----~~i~~V~~G~~V~~Ge~IG~vG~TG~  231 (279)
                      .|.-..-...+++..    .++ .|++||.|..||+|+.+-..|-
T Consensus        37 ~iEt~K~~~~v~a~~~G~v~~i-~v~~G~~v~~G~~l~~i~~~~~   80 (81)
T 1gjx_A           37 TLETDKATMDVPAEVAGVVKEV-KVKVGDKISEGGLIVVVEAEGT   80 (81)
T ss_dssp             EEECSSCEEEECCCCSSBBCCC-CCCSSCEECSSSCCCEECCSCC
T ss_pred             EEEECCCEEEEEECCCEEEEEE-ECCCCCEECCCCEEEEEECCCC
T ss_conf             9992785899990534399999-8189899789999999934757


No 29 
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=69.36  E-value=2  Score=20.43  Aligned_cols=17  Identities=18%  Similarity=0.301  Sum_probs=15.3

Q ss_pred             CCCCCEEECCCEEEEEE
Q ss_conf             46887860672687430
Q T0608           211 LEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       211 V~~G~~V~~Ge~IG~vG  227 (279)
                      |++|+.|..|++|+.+-
T Consensus        57 v~~G~~V~~G~~l~~Ie   73 (84)
T 2kcc_A           57 KRPGAVLEAGCVVARLE   73 (84)
T ss_dssp             SCTTCCCCTTCCCEEEE
T ss_pred             ECCCCEECCCCEEEEEE
T ss_conf             89989989999999993


No 30 
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.27  E-value=4.2  Score=17.71  Aligned_cols=60  Identities=12%  Similarity=0.030  Sum_probs=34.6

Q ss_pred             CEEECCCCEEEEEEECCC----CC-EEEEEEECCCEEEEEEECCCCC--CCCCCCEEECCCEEEEEE
Q ss_conf             778767868999752389----83-5999980897699975126655--246887860672687430
Q T0608           168 PVVSMTDGVVTEKGWLEK----GG-WRIGITAPTGAYFYYAHLDSYA--ELEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~----yG-n~ViI~Hg~G~~T~Y~HL~~i~--~V~~G~~V~~Ge~IG~vG  227 (279)
                      -|.|+..|+|+...-..|    -| -+++|.-..-...+++-.+-++  .|++||.|+.||+|+.+=
T Consensus        19 ~v~sp~~G~i~~~~V~~Gd~V~~G~~i~~iE~~K~~~~V~a~~~G~V~~~v~~Gd~V~~G~~l~~ie   85 (100)
T 2dn8_A           19 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLE   85 (100)
T ss_dssp             EEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEEECSCTTCEECSSCEEEEEC
T ss_pred             EEECCCCEEEEEEEECCCCEEECCCEEEEEECCCCCCEEECCCCEEEEEEEEECCEECCCCEEEEEE
T ss_conf             8878998499999947999990595499998276462486473849999975175386999999997


No 31 
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=67.87  E-value=2.8  Score=19.32  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=24.7

Q ss_pred             EEECCCEEEEEEEC----CCCCCCCCCCEEECCCEEEEEECCC
Q ss_conf             98089769997512----6655246887860672687430653
Q T0608           192 ITAPTGAYFYYAHL----DSYAELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       192 I~Hg~G~~T~Y~HL----~~i~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      |.-..-...+.+..    .++ .+++||.|..||+|+.+...|
T Consensus        38 iEt~K~~~~i~a~~~G~v~~i-~v~~G~~v~~G~~l~~i~~~G   79 (79)
T 1ghj_A           38 IETDKVVMEVLAEADGVIAEI-VKNEGDTVLSGELLGKLTEGG   79 (79)
T ss_dssp             EECSSCEEEEECSSCEEEEEE-SSCTTCEECTTCEEEEECCCC
T ss_pred             EECCCCEEEEECCCCEEEEEE-EECCCCEECCCCEEEEEECCC
T ss_conf             994640899974788999999-918999988999999996899


No 32 
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=67.41  E-value=2.5  Score=19.75  Aligned_cols=15  Identities=40%  Similarity=0.674  Sum_probs=7.2

Q ss_pred             CCCCCEEECCCEEEE
Q ss_conf             468878606726874
Q T0608           211 LEKGDPVKAGDLLGY  225 (279)
Q Consensus       211 V~~G~~V~~Ge~IG~  225 (279)
                      |++||.|.+||.|..
T Consensus      1130 v~~G~~V~aGq~Lvv 1144 (1150)
T 3hbl_A         1130 VNNGDTIATGDLLIE 1144 (1150)
T ss_dssp             CCTTCEECTTBEEEE
T ss_pred             ECCCCEECCCCEEEE
T ss_conf             189598789997999


No 33 
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=66.82  E-value=2.8  Score=19.23  Aligned_cols=25  Identities=12%  Similarity=0.114  Sum_probs=19.4

Q ss_pred             CCCCCCCCCC-EEECCCEEEEEECCCC
Q ss_conf             6655246887-8606726874306534
Q T0608           206 DSYAELEKGD-PVKAGDLLGYMGDSGY  231 (279)
Q Consensus       206 ~~i~~V~~G~-~V~~Ge~IG~vG~TG~  231 (279)
                      .++ .|++|+ .|.-|++|+.+..++-
T Consensus        62 ~~i-lv~eGd~~v~vG~~ia~i~~~~e   87 (108)
T 2dne_A           62 AKI-LVAEGTRDVPIGAIICITVGKPE   87 (108)
T ss_dssp             EEC-SSCTTCCSEETTCEEEEEESCHH
T ss_pred             EEE-EECCCCEEECCCCEEEEECCCCC
T ss_conf             788-86549818769998999905866


No 34 
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.65  E-value=4.7  Score=17.31  Aligned_cols=44  Identities=20%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             EEEEEECCCEEEEEEE----CCCCCCCCCCC-EEECCCEEEEEECCCCCC
Q ss_conf             9999808976999751----26655246887-860672687430653446
Q T0608           189 RIGITAPTGAYFYYAH----LDSYAELEKGD-PVKAGDLLGYMGDSGYGE  233 (279)
Q Consensus       189 ~ViI~Hg~G~~T~Y~H----L~~i~~V~~G~-~V~~Ge~IG~vG~TG~st  233 (279)
                      .+.|....-..-+.+.    |.++ .|++|+ .|..|++|+.+...|-..
T Consensus        41 l~~vEtdK~~~ei~a~~~G~l~~i-~v~eG~~~v~vG~~i~~i~~~~e~~   89 (98)
T 2dnc_A           41 LCEIETDKAVVTLDASDDGILAKI-VVEEGSKNIRLGSLIGLIVEEGEDW   89 (98)
T ss_dssp             EEEEECSSCEEEEECSSCEEEEEC-SSCTTCCCEESSCEEEEEECTTSCS
T ss_pred             EEEEECCCEEEEEECCCCEEEEEE-EEEECCCEECCCCEEEEEECCCCCC
T ss_conf             999983837899975854099999-9962984883899899991488764


No 35 
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=66.24  E-value=2.7  Score=19.45  Aligned_cols=29  Identities=17%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             EECCCCCCCCCCC-EEECCCEEEEEECCCCC
Q ss_conf             5126655246887-86067268743065344
Q T0608           203 AHLDSYAELEKGD-PVKAGDLLGYMGDSGYG  232 (279)
Q Consensus       203 ~HL~~i~~V~~G~-~V~~Ge~IG~vG~TG~s  232 (279)
                      |-+.++ .|++|| .|+-|++|+.+...+-.
T Consensus        79 G~i~~i-lv~eGd~~v~vG~~Ia~I~~~~~~  108 (128)
T 1y8o_B           79 GYLAKI-LVPEGTRDVPLGTPLCIIVEKEAD  108 (128)
T ss_dssp             EEEEEE-SSCTTCCSEETTCEEEEEESSGGG
T ss_pred             CCEEEE-EECCCCEEECCCCEEEEEECCCCC
T ss_conf             217698-966798687389989999357666


No 36 
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=64.82  E-value=3.1  Score=18.87  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             ECCCCCCCCCCC-EEECCCEEEEEECCC
Q ss_conf             126655246887-860672687430653
Q T0608           204 HLDSYAELEKGD-PVKAGDLLGYMGDSG  230 (279)
Q Consensus       204 HL~~i~~V~~G~-~V~~Ge~IG~vG~TG  230 (279)
                      .|.++ .|.+|+ .|.-|++||.+..+|
T Consensus        58 ~l~~i-~v~eGd~~v~vG~~ia~i~~~~   84 (87)
T 3crk_C           58 YLAKI-LVPEGTRDVPLGTPLCIIVEKE   84 (87)
T ss_dssp             EEEEE-SSCTTCCCEETTCEEEEEESSS
T ss_pred             EEEEE-EECCCCEEECCCCEEEEEECCC
T ss_conf             99999-9668984876999899995667


No 37 
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=63.35  E-value=5  Score=17.07  Aligned_cols=26  Identities=12%  Similarity=0.044  Sum_probs=20.7

Q ss_pred             CCCCCCCCCEEECCCEEEEEECCCCCC
Q ss_conf             655246887860672687430653446
Q T0608           207 SYAELEKGDPVKAGDLLGYMGDSGYGE  233 (279)
Q Consensus       207 ~i~~V~~G~~V~~Ge~IG~vG~TG~st  233 (279)
                      ++ .+++||.|..|++|+..-..+-+.
T Consensus        60 ~i-~v~~Gd~V~~G~~l~~ie~e~~~d   85 (93)
T 1k8m_A           60 KL-YYNLDDIAYVGKPLVDIETEALKD   85 (93)
T ss_dssp             EE-CCCSSCEECTTSEEEEEECSCCTT
T ss_pred             EE-EECCCCEECCCCEEEEEECCCCCC
T ss_conf             99-819999978999999997678754


No 38 
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=63.22  E-value=5.4  Score=16.82  Aligned_cols=59  Identities=10%  Similarity=-0.035  Sum_probs=38.5

Q ss_pred             EEECCCCEEEEEEEC-----CCCCEEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEEC
Q ss_conf             787678689997523-----89835999980897699975126----6552468878606726874306
Q T0608           169 VVSMTDGVVTEKGWL-----EKGGWRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMGD  228 (279)
Q Consensus       169 V~A~~dG~V~~a~~~-----~~yGn~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG~  228 (279)
                      +.|+..|+|+..--.     ...-.++.|....-...+++..+    ++ .|++||.|+.||+|..+-.
T Consensus        17 ~~APm~G~v~~~~V~~Gd~V~~G~~l~~vEt~K~~~ei~ap~~G~v~~i-~v~~Gd~V~~G~~L~~i~~   84 (99)
T 2ejm_A           17 PLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKV-FYREGAQANRHTPLVEFEE   84 (99)
T ss_dssp             CBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEE-SCCTTEEECTTCBCEEECC
T ss_pred             EECCCCEEEEEEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEE-EECCCCEECCCCEEEEEEC
T ss_conf             0388996999997689899879998999974765558992866879599-6189899789998999965


No 39 
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens}
Probab=63.16  E-value=1.7  Score=21.06  Aligned_cols=16  Identities=44%  Similarity=0.567  Sum_probs=9.3

Q ss_pred             CCCCCCEEECCCEEEE
Q ss_conf             2468878606726874
Q T0608           210 ELEKGDPVKAGDLLGY  225 (279)
Q Consensus       210 ~V~~G~~V~~Ge~IG~  225 (279)
                      .|++||.|..||+|+.
T Consensus        77 ~v~~G~~V~~G~~L~~   92 (94)
T 2jku_A           77 HCQAGDTVGEGDLLVE   92 (94)
T ss_dssp             ----------------
T ss_pred             EECCCCEECCCCEEEE
T ss_conf             9589899799999999


No 40 
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=61.11  E-value=5.8  Score=16.54  Aligned_cols=32  Identities=22%  Similarity=0.101  Sum_probs=22.2

Q ss_pred             CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCC
Q ss_conf             786899975238983599998089769997512665
Q T0608           173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY  208 (279)
Q Consensus       173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i  208 (279)
                      -.|+|..=....|||- |..+  +| .-+|-|.+.+
T Consensus         3 ~~G~Vk~f~~~KGfGF-I~~~--~G-~dvF~H~s~l   34 (74)
T 2k5n_A            3 MNGTITTWFKDKGFGF-IKDE--NG-DNRYFHVIKV   34 (74)
T ss_dssp             EEEEEEEEETTTTEEE-EEES--SS-CEEEEEGGGB
T ss_pred             CCEEEEEEECCCCCCE-EEEC--CC-CCEEEEEEEE
T ss_conf             5449999979899138-9606--89-8699998710


No 41 
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=56.74  E-value=0.6  Score=25.00  Aligned_cols=74  Identities=20%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             CCEEECCCCEEEEEEECC----CCCEEEEEEECCCE---EEEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             877876786899975238----98359999808976---99975126655246887860672687430653446777788
Q T0608           167 YPVVSMTDGVVTEKGWLE----KGGWRIGITAPTGA---YFYYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGE  239 (279)
Q Consensus       167 ~PV~A~~dG~V~~a~~~~----~yGn~ViI~Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~  239 (279)
                      ....|.+.|+|.......    +.|..|.|...+|-   .++-+.. ++ .|++||.|++||.|-.==|-|-.-      
T Consensus       170 ~~~~as~~G~I~~I~~~e~g~~~~~~~v~I~~~~G~~v~~~iP~Gp-~l-iV~~G~~v~~~qpLT~nPNVGGFG------  241 (289)
T 1vf5_C          170 NVFTASATGTITKIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGP-EL-IVSEGQAVKAGEALTNNPNVGGFG------  241 (289)
T ss_dssp             SCCCCSSSSCCCBCCCCCCCSSCCCCCCBCCCCSSSCCCCCCCSSS-CC-CCCTTCCCTTSCCCSCCCCCCCBE------
T ss_pred             CEEECCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCC-EE-EEECCCEEECCCCCCCCCCCCCCC------
T ss_conf             4660567737888764467787753699997799988777428997-58-870798785698665799866667------


Q ss_pred             CCCCEEEEEEEC
Q ss_conf             897225899981
Q T0608           240 FPVHLHLGIYLK  251 (279)
Q Consensus       240 ~g~HLHfei~~~  251 (279)
                         ..--||-++
T Consensus       242 ---Q~d~EIVLQ  250 (289)
T 1vf5_C          242 ---QDDTEIVLQ  250 (289)
T ss_dssp             ---EEEEEEEEC
T ss_pred             ---CCCEEEEEC
T ss_conf             ---661489941


No 42 
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project on protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima MSB8} PDB: 2zbu_A*
Probab=56.23  E-value=6.5  Score=16.08  Aligned_cols=24  Identities=33%  Similarity=0.528  Sum_probs=18.5

Q ss_pred             EEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             86067268743065344677778889722589998178
Q T0608           216 PVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEG  253 (279)
Q Consensus       216 ~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~  253 (279)
                      .|..|+.+.+.||+|+              +||=++..
T Consensus       222 ~v~~G~~~~~~~S~G~--------------lEiain~G  245 (263)
T 2zbv_A          222 DVDTGELLVHPDSAGF--------------LEIAVNLG  245 (263)
T ss_dssp             GSCTTCEEEEECTTSE--------------EEEEETTS
T ss_pred             CCCCCCEEEEECCCCC--------------EEEEEECC
T ss_conf             6799988999889991--------------99998573


No 43 
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=55.35  E-value=7  Score=15.81  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=17.5

Q ss_pred             CCCCCCCCCEEECCCEEEEEECC
Q ss_conf             65524688786067268743065
Q T0608           207 SYAELEKGDPVKAGDLLGYMGDS  229 (279)
Q Consensus       207 ~i~~V~~G~~V~~Ge~IG~vG~T  229 (279)
                      ++ .|++||.|+.||+|+.+-..
T Consensus        49 ~i-~v~~Gd~V~~G~~l~~i~~~   70 (72)
T 1z6h_A           49 EV-KKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             EE-SSCTTCEECTTCEEEEEGGG
T ss_pred             EE-EECCCCEECCCCEEEEEECC
T ss_conf             99-73898998999999999689


No 44 
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=55.14  E-value=5.3  Score=16.90  Aligned_cols=54  Identities=19%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CEEECCCCEEEEEEECC--------CCCE-EEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECCC
Q ss_conf             77876786899975238--------9835-999980897699975126655246887860672687430653
Q T0608           168 PVVSMTDGVVTEKGWLE--------KGGW-RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~--------~yGn-~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      +|+|..+|.|...+-..        |.|. .=.|||+-|+.        + .++.||+|++||+|..+=...
T Consensus       374 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~d~iD~~vGi~--------~-~~k~Gd~V~~g~pl~~i~~~~  436 (474)
T 1uou_A          374 ELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAE--------L-LVDVGQRLRRGTPWLRVHRDG  436 (474)
T ss_dssp             EEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEE--------E-CSCTTCEECTTCEEEEEEESS
T ss_pred             EEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEECCC
T ss_conf             99738986999954699999999858883889758366868--------6-146879856999389996698


No 45 
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica cnb-440} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=53.62  E-value=7.4  Score=15.60  Aligned_cols=19  Identities=26%  Similarity=0.340  Sum_probs=14.8

Q ss_pred             CCCEEECCCEEEEEECCCC
Q ss_conf             8878606726874306534
Q T0608           213 KGDPVKAGDLLGYMGDSGY  231 (279)
Q Consensus       213 ~G~~V~~Ge~IG~vG~TG~  231 (279)
                      .=..|..|+.+++.||+|+
T Consensus       227 ty~dv~~Ge~lal~nS~G~  245 (283)
T 2q6k_A          227 TFGEVDEGQPLLYLNSRGR  245 (283)
T ss_dssp             SGGGSCTTCEEEEECTTSE
T ss_pred             CCCCCCCCCEEEEECCCCC
T ss_conf             2245799988999989996


No 46 
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=52.99  E-value=6  Score=16.42  Aligned_cols=53  Identities=25%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC
Q ss_conf             7787678689997523--------8983599---998089769997512665524688786067268743065
Q T0608           168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS  229 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T  229 (279)
                      +|+|..+|.|...+..        -|.|...   .|||+-|+.        + .++.||+|++||+|..+=.+
T Consensus       337 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~~~d~iD~~~Gi~--------~-~~k~G~~V~~g~~l~~i~~~  400 (433)
T 1brw_A          337 TVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIV--------L-HKKIGDRVQKGEALATIHSN  400 (433)
T ss_dssp             EEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTCEEEEEEES
T ss_pred             EEECCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEECC
T ss_conf             9963798799885499999999980899787778889677768--------8-52685996799918999758


No 47 
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Probab=52.11  E-value=6.3  Score=16.23  Aligned_cols=53  Identities=28%  Similarity=0.401  Sum_probs=37.4

Q ss_pred             CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC
Q ss_conf             7787678689997523--------8983599---998089769997512665524688786067268743065
Q T0608           168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS  229 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T  229 (279)
                      +|+|..+|.|...+-.        -|.|...   .|||+-|+.        + .++.||+|++||+|..+=+.
T Consensus       329 ~i~a~~~G~i~~id~~~ig~~~~~LG~GR~~~~d~id~~vGi~--------~-~~k~G~~V~~g~~l~~i~~~  392 (423)
T 2dsj_A          329 PLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVY--------L-LKKPGDRVERGEALALVYHR  392 (423)
T ss_dssp             EEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTSEEEEEEEC
T ss_pred             EEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEE--------E-EECCCCEECCCCEEEEEECC
T ss_conf             7733778678653079999999996212304899888577869--------8-61586986799918999669


No 48 
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=48.27  E-value=6.1  Score=16.33  Aligned_cols=53  Identities=26%  Similarity=0.237  Sum_probs=39.7

Q ss_pred             CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC
Q ss_conf             7787678689997523--------8983599---998089769997512665524688786067268743065
Q T0608           168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS  229 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T  229 (279)
                      +|+|..+|.|...+..        -|.|...   .|||+=|+.        + .++.||+|++||+|..+=.+
T Consensus       342 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~~~d~id~~vGi~--------~-~~k~Gd~V~~g~~l~~i~~~  405 (440)
T 2tpt_A          342 AVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFT--------D-MARLGDQVDGQRPLAVIHAK  405 (440)
T ss_dssp             EECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEE--------S-CCCTTCEEBTTBCSEEEEES
T ss_pred             EEEECCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEECC
T ss_conf             9971698689885289999999982898577888878577868--------7-42686986799908999749


No 49 
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=47.57  E-value=5.6  Score=16.70  Aligned_cols=17  Identities=35%  Similarity=0.903  Sum_probs=14.0

Q ss_pred             EEECCCEEEEEECCCCC
Q ss_conf             86067268743065344
Q T0608           216 PVKAGDLLGYMGDSGYG  232 (279)
Q Consensus       216 ~V~~Ge~IG~vG~TG~s  232 (279)
                      .|++||++|.+|-.|..
T Consensus       308 ~v~~Ge~~~iiG~nGaG  324 (538)
T 1yqt_A          308 EIKKGEVIGIVGPNGIG  324 (538)
T ss_dssp             EEETTCEEEEECCTTSS
T ss_pred             EECCCCEEEEECCCCCC
T ss_conf             77279789995257863


No 50 
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=46.58  E-value=3.2  Score=18.78  Aligned_cols=12  Identities=17%  Similarity=0.111  Sum_probs=5.7

Q ss_pred             CCCEEECCCCCC
Q ss_conf             420470266798
Q T0608           152 HEGTDIMAEKNT  163 (279)
Q Consensus       152 H~GiDiaa~~GT  163 (279)
                      -.|||+..-.||
T Consensus       141 E~gIdl~~I~GT  152 (229)
T 1zy8_K          141 KHSLDASQGTAT  152 (229)
T ss_dssp             HTTCCSSSSCCC
T ss_pred             HCCCCHHHCCCC
T ss_conf             839777571121


No 51 
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=46.54  E-value=8.2  Score=15.22  Aligned_cols=13  Identities=31%  Similarity=0.759  Sum_probs=5.0

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |+-..+|+|+..|
T Consensus       213 Iivl~~G~Iv~~G  225 (247)
T 2ff7_A          213 IIVMEKGKIVEQG  225 (247)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEC
T ss_conf             9999899999998


No 52 
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=46.30  E-value=8.3  Score=15.20  Aligned_cols=16  Identities=19%  Similarity=0.306  Sum_probs=6.3

Q ss_pred             CCCCCCCCCCCEEECC
Q ss_conf             2665524688786067
Q T0608           205 LDSYAELEKGDPVKAG  220 (279)
Q Consensus       205 L~~i~~V~~G~~V~~G  220 (279)
                      +++++-.+.|..|..|
T Consensus       195 aD~Iivl~~G~Iv~~G  210 (237)
T 2cbz_A          195 VDVIIVMSGGKISEMG  210 (237)
T ss_dssp             SSEEEEEETTEEEEEE
T ss_pred             CCEEEEEECCEEEEEC
T ss_conf             9999999899999986


No 53 
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=45.68  E-value=8.6  Score=15.05  Aligned_cols=12  Identities=8%  Similarity=0.141  Sum_probs=4.1

Q ss_pred             EEECCCCEEEEE
Q ss_conf             787678689997
Q T0608           169 VVSMTDGVVTEK  180 (279)
Q Consensus       169 V~A~~dG~V~~a  180 (279)
                      |.-..+|+|++.
T Consensus       199 iivl~~G~i~~~  210 (229)
T 2pze_A          199 ILILHEGSSYFY  210 (229)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCEEEEE
T ss_conf             999989999999


No 54 
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=45.14  E-value=9.7  Score=14.60  Aligned_cols=32  Identities=16%  Similarity=-0.034  Sum_probs=20.5

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCC
Q ss_conf             86899975238983599998089769997512665
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY  208 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i  208 (279)
                      -|+|..=....||| +|  ...++-.-++-|.+.+
T Consensus        10 ~G~VKwfn~~KGfG-FI--~~~d~~~DvFvH~s~i   41 (79)
T 1h95_A           10 LGTVKWFNVRNGYG-FI--NRNDTKEDVFVHQTAI   41 (79)
T ss_dssp             EEEEEEEETTTTEE-EE--EEGGGTEEEEEEGGGB
T ss_pred             EEEEEEEECCCCEE-EE--EECCCCCCEEEEHHHH
T ss_conf             08999997999989-99--8689986799984993


No 55 
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Probab=44.73  E-value=9.1  Score=14.83  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=12.1

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCCCEEECC
Q ss_conf             599998089769997512665524688786067
Q T0608           188 WRIGITAPTGAYFYYAHLDSYAELEKGDPVKAG  220 (279)
Q Consensus       188 n~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~G  220 (279)
                      -+|+|.|.... ..|..+++++-...|+.|..|
T Consensus       195 ~~iiish~~~~-~~~~~aDri~vm~~G~Iv~~G  226 (250)
T 2d2e_A          195 GALVITHYQRI-LNYIQPDKVHVMMDGRVVATG  226 (250)
T ss_dssp             EEEEECSSSGG-GGTSCCSEEEEEETTEEEEEE
T ss_pred             CEEEEEECHHH-HHHHHCCEEEEEECCEEEEEC
T ss_conf             79999814788-999849999999899799992


No 56 
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58}
Probab=44.70  E-value=9.9  Score=14.55  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC-CEEECCCEEEE
Q ss_conf             786899975238983599998089769997512665524688-78606726874
Q T0608           173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG-DPVKAGDLLGY  225 (279)
Q Consensus       173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G-~~V~~Ge~IG~  225 (279)
                      +.|+|..=....||| +|..+.  |=.-+|-|.+.+ . ..| ..+..||.|-+
T Consensus         2 ~~G~Vkwf~~~kGyG-FI~~d~--~~~dvFvH~s~l-~-~~g~~~l~~G~~V~f   50 (67)
T 3cam_A            2 ATGIVKWFNDAKGFG-FITPDE--GGEDLFAHFSAI-N-MEGFKTLKEGQRVSF   50 (67)
T ss_dssp             EEEEEEEEETTTTEE-EEEETT--SCCCEEEEGGGB-C-GGGGSSCCTTCEEEE
T ss_pred             CCEEEEEEECCCCCE-EEEECC--CCCEEEEEEHHC-C-CCCCCCCCCCCEEEE
T ss_conf             981999997999958-998789--982899980560-5-226984899999999


No 57 
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=44.58  E-value=9.9  Score=14.53  Aligned_cols=55  Identities=25%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             CCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE
Q ss_conf             8778767868999752389835999980897699975-126655246887860672687
Q T0608           167 YPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG  224 (279)
Q Consensus       167 ~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG  224 (279)
                      .||.+-.+|+|.+...  .....|+++.. ++...|. ...+.+.|+.||.|++||.|.
T Consensus      1271 ~~iis~~~g~v~i~~~--~~~~~i~i~~~-~~~~~~~ip~~~~l~v~~gd~v~~g~~l~ 1326 (1524)
T 2a6h_D         1271 KAVISEIDGVVRIEET--EEKLSVFVESE-GFSKEYKLPKEARLLVKDGDYVEAGQPLT 1326 (1524)
T ss_dssp             BCCBCSSCEEEEECCC--SSCEEEEEECS-SCEEEEEECTTCCCCCCTTSEECTTCBSS
T ss_pred             CCEEEEECCEEEEEEC--CCEEEEEECCC-CCEEEEECCCCCEEEEECCCEEECCCEEC
T ss_conf             8648860666999853--77069998369-80799984899868984899995688721


No 58 
>1v8q_A TT0826; structural genomics, proteomics, riken structural genomics/proteomics initiative, RSGI, translation; 2.80A {Thermus thermophilus} SCOP: b.84.4.1 PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 3fin_0 3hux_0 3huz_0 ...
Probab=44.37  E-value=9.4  Score=14.71  Aligned_cols=30  Identities=20%  Similarity=0.328  Sum_probs=18.9

Q ss_pred             CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE
Q ss_conf             4444204702667988888778767868999752
Q T0608           149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW  182 (279)
Q Consensus       149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~  182 (279)
                      .++|.|.-...-...+    ++|..+|+|.|...
T Consensus        43 tk~hPG~nVg~GkD~T----LfAl~~G~V~F~~~   72 (85)
T 1v8q_A           43 TRFKPGKNVGMGRDFT----LFALVDGVVEFQDR   72 (85)
T ss_dssp             CSSEECTTEEECTTCC----EEESSSEEEEEEEC
T ss_pred             CEEECCCCEEECCCCC----EEEECCEEEEEEEC
T ss_conf             7183888851568882----88840579998594


No 59 
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=42.97  E-value=8.7  Score=15.02  Aligned_cols=27  Identities=26%  Similarity=0.381  Sum_probs=15.4

Q ss_pred             CCCCCCEEECCCCCCCCCCCEEECCCCEEEE
Q ss_conf             4444204702667988888778767868999
Q T0608           149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTE  179 (279)
Q Consensus       149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~  179 (279)
                      .++|.|.-...-...    -++|..+|+|.|
T Consensus        43 tk~hpG~nVg~GkD~----TlfA~~~G~V~F   69 (69)
T 2ftc_O           43 FRWHPGAHVGVGKNK----CLYALEEGIVRY   69 (69)
T ss_pred             CCEECCCCCCCCCCC----CEEECCCEEEEC
T ss_conf             808088984198878----658623338859


No 60 
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=42.83  E-value=10  Score=14.33  Aligned_cols=59  Identities=22%  Similarity=0.141  Sum_probs=32.6

Q ss_pred             CEEECCCCEEEEEEECCC----CCEEEEEEEC-CCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE
Q ss_conf             778767868999752389----8359999808-97699975126----655246887860672687430
Q T0608           168 PVVSMTDGVVTEKGWLEK----GGWRIGITAP-TGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG  227 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~----yGn~ViI~Hg-~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG  227 (279)
                      +|.|+-.|.|-...-..|    -|..|.|=-. .=-..+.+-.+    ++ .|++||.|.+||.|..+|
T Consensus      1097 ~V~Ap~~GnVWKV~V~~GD~VkaGd~L~IlEAMKMEi~V~AP~~G~V~~I-~v~~Gd~V~aGq~LvVIg 1164 (1165)
T 2qf7_A         1097 HVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV-LVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             EEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEE-CCCSSCEECTTBEEEEC-
T ss_pred             EECCCCCEEEEEEEECCCCEECCCCEEEEEEHHHCCCCCCCCCCEEEEEE-EECCCCEECCCCEEEEEC
T ss_conf             77689995899999799999799998999865208672428999399789-828969888999899947


No 61 
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=42.21  E-value=11  Score=14.26  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=24.8

Q ss_pred             EEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEECCC
Q ss_conf             9980897699975126----655246887860672687430653
Q T0608           191 GITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       191 iI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      .|.-..-...+.+..+    ++ .|++||.|..||+|+.+-.++
T Consensus        34 ~iE~~K~~~~i~a~~~G~v~~i-~v~~Gd~V~~G~~l~~ie~~~   76 (79)
T 1iyu_A           34 VLESAKASMEVPSPKAGVVKSV-SVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEECSSCEEEEECSSSSEEEEE-SCCTTCEEETTSEEEEEECCC
T ss_pred             EEEECCCCEEEECCCCEEEEEE-EECCCCEECCCCEEEEEECCC
T ss_conf             9990773148988999999999-358969989999999994676


No 62 
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=40.32  E-value=11  Score=14.05  Aligned_cols=30  Identities=17%  Similarity=0.128  Sum_probs=12.5

Q ss_pred             EEEEEECCCEEEEEEECCCCCCCCCCCEEECCC
Q ss_conf             999980897699975126655246887860672
Q T0608           189 RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD  221 (279)
Q Consensus       189 ~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge  221 (279)
                      +|+|.|.-...   ..+++++-++.|..|..|.
T Consensus       210 vI~itH~l~~~---~~aD~Iivl~~G~Iv~~Gt  239 (271)
T 2ixe_A          210 VLLITQQLSLA---ERAHHILFLKEGSVCEQGT  239 (271)
T ss_dssp             EEEECSCHHHH---TTCSEEEEEETTEEEEEEC
T ss_pred             EEEECCCHHHH---HHCCEEEEEECCEEEEECC
T ss_conf             99986889999---8599999998999999889


No 63 
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=40.30  E-value=11  Score=14.04  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=13.0

Q ss_pred             CEEECCCCEEEEEEECCCC
Q ss_conf             7787678689997523898
Q T0608           168 PVVSMTDGVVTEKGWLEKG  186 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~y  186 (279)
                      -|....+|.|+..+....+
T Consensus       214 rv~~m~~G~iv~~g~~~~~  232 (235)
T 1l2t_A          214 RIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             EEEEEETTEEEEEEECC--
T ss_pred             EEEEEECCEEEEECCCCCC
T ss_conf             8999979999997762145


No 64 
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=39.58  E-value=12  Score=13.95  Aligned_cols=17  Identities=24%  Similarity=0.251  Sum_probs=7.2

Q ss_pred             ECCCCCCCCCCCEEECC
Q ss_conf             12665524688786067
Q T0608           204 HLDSYAELEKGDPVKAG  220 (279)
Q Consensus       204 HL~~i~~V~~G~~V~~G  220 (279)
                      ++++++-.+.|..|..|
T Consensus       224 ~~Dri~vl~~G~i~~~G  240 (290)
T 2bbs_A          224 KADKILILHEGSSYFYG  240 (290)
T ss_dssp             HSSEEEEEETTEEEEEE
T ss_pred             HCCEEEEEECCEEEEEC
T ss_conf             59999999899999985


No 65 
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=39.51  E-value=12  Score=13.94  Aligned_cols=13  Identities=31%  Similarity=0.751  Sum_probs=4.8

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |+-..+|+|+..|
T Consensus       223 Iivl~~G~iv~~G  235 (260)
T 2ghi_A          223 IILLNKGKIVEKG  235 (260)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEC
T ss_conf             9999899999988


No 66 
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=39.15  E-value=12  Score=13.90  Aligned_cols=31  Identities=19%  Similarity=0.181  Sum_probs=17.5

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCCCEEECCC
Q ss_conf             5999980897699975126655246887860672
Q T0608           188 WRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD  221 (279)
Q Consensus       188 n~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge  221 (279)
                      .+|+|.|.-...   .++++++-.+.|..|..|.
T Consensus       190 Tvi~itH~l~~~---~~~D~i~vl~~G~iv~~G~  220 (243)
T 1mv5_A          190 TTLVIAHRLSTI---VDADKIYFIEKGQITGSGK  220 (243)
T ss_dssp             EEEEECCSHHHH---HHCSEEEEEETTEECCCSC
T ss_pred             EEEEEECCHHHH---HHCCEEEEEECCEEEEECC
T ss_conf             899996889999---8599999998999999889


No 67 
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=38.60  E-value=12  Score=13.84  Aligned_cols=13  Identities=31%  Similarity=0.677  Sum_probs=5.1

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |....+|+|+..|
T Consensus       223 i~vm~~G~iv~~G  235 (262)
T 1b0u_A          223 VIFLHQGKIEEEG  235 (262)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEC
T ss_conf             9999799999986


No 68 
>2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein, mehtanococcus jannaschii, structural genomics, PSI; 2.50A {Methanocaldococcus jannaschii}
Probab=37.48  E-value=12  Score=13.71  Aligned_cols=13  Identities=8%  Similarity=0.521  Sum_probs=11.4

Q ss_pred             CCCEEEEEECCCC
Q ss_conf             6726874306534
Q T0608           219 AGDLLGYMGDSGY  231 (279)
Q Consensus       219 ~Ge~IG~vG~TG~  231 (279)
                      .|+.+++.||+|+
T Consensus       227 ~G~~lal~nS~G~  239 (273)
T 2f4n_A          227 KNNFICLINSEGF  239 (273)
T ss_dssp             TTSCEEEECTTSC
T ss_pred             CCCEEEEECCCCC
T ss_conf             9988999879992


No 69 
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=37.42  E-value=12  Score=13.70  Aligned_cols=14  Identities=14%  Similarity=0.209  Sum_probs=9.1

Q ss_pred             EEECCCCEEEEEEE
Q ss_conf             78767868999752
Q T0608           169 VVSMTDGVVTEKGW  182 (279)
Q Consensus       169 V~A~~dG~V~~a~~  182 (279)
                      |....+|+++..|.
T Consensus       203 i~vl~~G~ii~~g~  216 (249)
T 2qi9_C          203 AWLLKGGKMLASGR  216 (249)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             EEEEECCEEEEECC
T ss_conf             99998998999878


No 70 
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=37.35  E-value=12  Score=13.69  Aligned_cols=17  Identities=29%  Similarity=0.894  Sum_probs=14.6

Q ss_pred             EEECCCEEEEEECCCCC
Q ss_conf             86067268743065344
Q T0608           216 PVKAGDLLGYMGDSGYG  232 (279)
Q Consensus       216 ~V~~Ge~IG~vG~TG~s  232 (279)
                      .|.+||++|.+|-.|..
T Consensus       378 ~i~~GEiv~i~G~NGaG  394 (607)
T 3bk7_A          378 EIRKGEVIGIVGPNGIG  394 (607)
T ss_dssp             EEETTCEEEEECCTTSS
T ss_pred             CCCCCEEEEEECCCCCC
T ss_conf             66765189998789998


No 71 
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A, isocitrate lyase, persistence, GLCB, structural genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Probab=36.60  E-value=13  Score=13.60  Aligned_cols=49  Identities=22%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             ECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEE
Q ss_conf             067268743065344677778889722589998178886321708999886228767731
Q T0608           218 KAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVY  277 (279)
Q Consensus       218 ~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~~~~~~~~  277 (279)
                      ...|.+||.|+.-..++--=.  --.||+||.+         ||...+-..+++-|+|+.
T Consensus       213 ~~~qf~G~~g~~~~p~~ill~--~n~LHiei~i---------d~~~~iG~~d~agi~Di~  261 (741)
T 1n8i_A          213 NPGQFAGYTGAAESPTSVLLI--NHGLHIEILI---------DPESQVGTTDRAGVKDVI  261 (741)
T ss_dssp             SGGGEEEEEEETTEEEEEEEE--ETTEEEEEEE---------CTTSTTGGGSTTCEEEEE
T ss_pred             CHHHEEEECCCCCCCHHHHHH--HCCCEEEEEE---------CCCCCCCCCCCCCCHHHH
T ss_conf             755757654888881667998--6884699998---------888754557801023664


No 72 
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1}
Probab=36.40  E-value=13  Score=13.58  Aligned_cols=46  Identities=24%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCC--EEECCCEEEE
Q ss_conf             868999752389835999980897699975126655246887--8606726874
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGD--PVKAGDLLGY  225 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~--~V~~Ge~IG~  225 (279)
                      .|+|..=....|||- |.-  .+| .-+|-|.+.+.  ..|.  .+..||.+-+
T Consensus         2 ~G~Vk~f~~~KGfGF-I~~--d~g-~DvFvH~s~i~--~~~~~~~L~~G~~V~F   49 (74)
T 2kcm_A            2 KGKVVSYLAAKKYGF-IQG--DDG-ESYFLHFSELL--DKKDEGKLVKGSMVHF   49 (74)
T ss_dssp             EEEEEEEETTTTEEE-EEE--TTS-CEECCCGGGSS--CSGGGTTCCTTSEEEE
T ss_pred             EEEEEEEECCCCEEE-EEC--CCC-CEEEEEHHHHC--CCCCCCCCCCCCEEEE
T ss_conf             389999989998667-836--999-67999947703--4788545799999999


No 73 
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=35.55  E-value=13  Score=13.48  Aligned_cols=15  Identities=47%  Similarity=0.563  Sum_probs=5.2

Q ss_pred             CCCCCCCCCCEEECC
Q ss_conf             665524688786067
Q T0608           206 DSYAELEKGDPVKAG  220 (279)
Q Consensus       206 ~~i~~V~~G~~V~~G  220 (279)
                      ++++-.+.|+.|..|
T Consensus       206 drv~vl~~G~iv~~G  220 (266)
T 2yz2_A          206 DRVVVLEKGKKVFDG  220 (266)
T ss_dssp             SEEEEEETTEEEEEE
T ss_pred             CEEEEEECCEEEEEC
T ss_conf             999999899899986


No 74 
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=35.50  E-value=13  Score=13.47  Aligned_cols=13  Identities=23%  Similarity=0.498  Sum_probs=6.1

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |....+|+|+..|
T Consensus       223 v~vm~~G~Iv~~G  235 (257)
T 1g6h_A          223 LYVMFNGQIIAEG  235 (257)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
T ss_conf             9999799999993


No 75 
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=34.80  E-value=13  Score=13.39  Aligned_cols=44  Identities=18%  Similarity=0.132  Sum_probs=21.4

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEE
Q ss_conf             868999752389835999980897699975126655246887860
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVK  218 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~  218 (279)
                      .|+|..+.+.+.. ..+.++.+++-..+-+..+....+++|+.|.
T Consensus       320 ~g~V~~~e~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~  363 (390)
T 3gd7_A          320 EGEVQVVEQLGNE-TQIHIQIPSIRQNLVYRQNDVVLVEEGATFA  363 (390)
T ss_dssp             EEEEEEEEECSSC-EEEEEECTTCSSCEEEEESSCCCCCTTSEEE
T ss_pred             EEEEEEEEECCCE-EEEEEEECCCCEEEEEECCCCCCCCCCCEEE
T ss_conf             9999999975993-9999999998679999858988899899999


No 76 
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 1pnu_U 1pny_U 1vor_X 1vou_X 1vow_X 1voy_X ...
Probab=33.57  E-value=14  Score=13.24  Aligned_cols=30  Identities=13%  Similarity=0.212  Sum_probs=19.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE
Q ss_conf             4444204702667988888778767868999752
Q T0608           149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW  182 (279)
Q Consensus       149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~  182 (279)
                      .++|.|.-...-...+    ++|..+|+|.|...
T Consensus        43 tk~hPG~NVg~GkD~T----LfAl~~G~V~F~~~   72 (91)
T 2zjr_T           43 TKFKAGQGVGMGRDHT----LFALSDGKVVFINK   72 (91)
T ss_dssp             SSSEECTTEECCTTSC----EEESSCEEEEEEEE
T ss_pred             CCCCCCCCEEECCCCC----EEEECCEEEEEEEC
T ss_conf             7271888742768882----88850359999897


No 77 
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=32.69  E-value=14  Score=13.13  Aligned_cols=18  Identities=44%  Similarity=0.667  Sum_probs=14.3

Q ss_pred             CEEECCCEEEEEECCCCC
Q ss_conf             786067268743065344
Q T0608           215 DPVKAGDLLGYMGDSGYG  232 (279)
Q Consensus       215 ~~V~~Ge~IG~vG~TG~s  232 (279)
                      =.+++||.||.+|.||..
T Consensus      1054 l~I~~Ge~vaIvG~SGSG 1071 (1284)
T 3g5u_A         1054 LEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp             EEECSSSEEEEECSSSTT
T ss_pred             EEECCCCEEEEECCCCCH
T ss_conf             998898999998999980


No 78 
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=31.91  E-value=15  Score=13.03  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=8.9

Q ss_pred             CEEECCCCEEEEEEE
Q ss_conf             778767868999752
Q T0608           168 PVVSMTDGVVTEKGW  182 (279)
Q Consensus       168 PV~A~~dG~V~~a~~  182 (279)
                      -|.-..+|+|+..|.
T Consensus       213 rv~vl~~G~iv~~G~  227 (275)
T 3gfo_A          213 NVFVMKEGRVILQGN  227 (275)
T ss_dssp             EEEEEETTEEEEEEC
T ss_pred             EEEEEECCEEEEECC
T ss_conf             999997999999879


No 79 
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=30.77  E-value=15  Score=12.89  Aligned_cols=13  Identities=38%  Similarity=0.672  Sum_probs=6.5

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |....+|+|+..|
T Consensus       229 i~vm~~G~iv~~G  241 (263)
T 2olj_A          229 VLFMDGGYIIEEG  241 (263)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEC
T ss_conf             9999899999988


No 80 
>1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A
Probab=30.46  E-value=16  Score=12.85  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE--CCCCCE
Q ss_conf             775327856788778766874444204702667988888778767868999752--389835
Q T0608           129 DTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW--LEKGGW  188 (279)
Q Consensus       129 p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~--~~~yGn  188 (279)
                      |...=+.+.-+||.....+.-  -..++...........|-+++..|.|+|+|+  .+.||.
T Consensus         7 pAP~CV~~~qsWRYT~v~N~C--s~tvsVtV~Y~dG~~~PCrv~~PG~~Tf~G~Gt~Gn~gh   66 (74)
T 1ok0_A            7 PAPSCVTLYQSWRYSQADNGC--AETVTVKVVYEDDTEGLCYAVAPGQITTVGDGYIGSHGH   66 (74)
T ss_dssp             BCCTTEEEEECSSEEEEEECS--SSCEEEEEEETTSCBCCCEEECTTCEEEEEECTTSTTCS
T ss_pred             CCCCCEEEECCEEEEEEECCC--CCCEEEEEEEECCCCCEEEEECCCCEECCCCCCCCCCCC
T ss_conf             680037870545888540897--443799999808970201661897476142355477777


No 81 
>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Sulfolobus solfataricus P2} SCOP: d.77.1.2
Probab=30.45  E-value=16  Score=12.85  Aligned_cols=11  Identities=18%  Similarity=0.468  Sum_probs=4.4

Q ss_pred             CHHHHHHHHHC
Q ss_conf             70899988622
Q T0608           260 NPYPVLRYAEN  270 (279)
Q Consensus       260 nP~~~l~~~~~  270 (279)
                      ||.-+++|++|
T Consensus       120 ~~~~lidwL~p  130 (155)
T 2nwu_A          120 NPKEIVDWLAP  130 (155)
T ss_dssp             CHHHHHHHHSC
T ss_pred             CHHHHHHHHCC
T ss_conf             98999987203


No 82 
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=30.10  E-value=16  Score=12.80  Aligned_cols=11  Identities=9%  Similarity=0.422  Sum_probs=4.7

Q ss_pred             HHHHHHCCCEE
Q ss_conf             99886228767
Q T0608           264 VLRYAENARIK  274 (279)
Q Consensus       264 ~l~~~~~~~~~  274 (279)
                      .+.|.+++-+.
T Consensus       326 a~~~l~~~~~~  336 (343)
T 3dhw_C          326 AIAWLQEHHVK  336 (343)
T ss_dssp             HHHHHHHTTEE
T ss_pred             HHHHHHHCCCE
T ss_conf             99999985986


No 83 
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens}
Probab=29.79  E-value=13  Score=13.59  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=24.2

Q ss_pred             CEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEE
Q ss_conf             689997523898359999808976999751266552468878606726874
Q T0608           175 GVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGY  225 (279)
Q Consensus       175 G~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~  225 (279)
                      |+|..  |..+||-   |...++=.-++-|.+.+ .  .+..++.||.+-+
T Consensus        11 G~V~~--~~~GfGF---I~~~d~~~dvFfH~s~~-~--~~~~l~~G~~V~F   53 (89)
T 1x65_A           11 GVIAA--MRDGFGF---IKCVDRDVRMFFHFSEI-L--DGNQLHIADEVEF   53 (89)
T ss_dssp             EEEEE--CCTTBCE---EEESSSSSCCCCBTTGG-G--GSCCCCTTCCEEE
T ss_pred             EEEEE--ECCCEEE---EECCCCCCCEEEEHHHC-C--CCCCCCCCCEEEE
T ss_conf             99999--7087147---86289994089993460-5--8898789999999


No 84 
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A*
Probab=29.28  E-value=16  Score=12.69  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=22.0

Q ss_pred             CEEECCCEEEEEECCCCC-CCCCCCCCCCCE--EEEEEECCC
Q ss_conf             786067268743065344-677778889722--589998178
Q T0608           215 DPVKAGDLLGYMGDSGYG-EEGTTGEFPVHL--HLGIYLKEG  253 (279)
Q Consensus       215 ~~V~~Ge~IG~vG~TG~s-t~~~~~~~g~HL--Hfei~~~~~  253 (279)
                      =.+++||.||.+|.||.. |+.-.--.|-.=  .=+|+++|.
T Consensus       362 ~~i~~G~~i~IvG~sGsGKSTll~ll~gl~~~~~G~I~~~g~  403 (578)
T 2hyd_A          362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH  403 (578)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf             897289789998589851768999983666799828999999


No 85 
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=28.62  E-value=17  Score=12.61  Aligned_cols=13  Identities=15%  Similarity=0.271  Sum_probs=5.1

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |....+|+|+..|
T Consensus       209 i~vl~~G~iv~~g  221 (240)
T 1ji0_A          209 GYVLETGQIVLEG  221 (240)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
T ss_conf             9999899999992


No 86 
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=28.53  E-value=13  Score=13.39  Aligned_cols=13  Identities=8%  Similarity=-0.148  Sum_probs=10.2

Q ss_pred             CCCEEEEEEECCC
Q ss_conf             9722589998178
Q T0608           241 PVHLHLGIYLKEG  253 (279)
Q Consensus       241 g~HLHfei~~~~~  253 (279)
                      |.|+|+.++-+|+
T Consensus       229 g~H~H~Sl~~~g~  241 (421)
T 2j9i_A          229 GSHSIWDVGAAGT  241 (421)
T ss_dssp             BCCEEECEEETTE
T ss_pred             CEEEEEECCCCCC
T ss_conf             4179984379997


No 87 
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A*
Probab=28.31  E-value=15  Score=13.05  Aligned_cols=13  Identities=15%  Similarity=0.368  Sum_probs=10.7

Q ss_pred             CCCEEEEEEECCC
Q ss_conf             9722589998178
Q T0608           241 PVHLHLGIYLKEG  253 (279)
Q Consensus       241 g~HLHfei~~~~~  253 (279)
                      |.|+|+.+|-.++
T Consensus       282 G~H~H~SL~~~~~  294 (486)
T 2bvc_A          282 GMHCHQSLWKDGA  294 (486)
T ss_dssp             CEEEEEEEEETTE
T ss_pred             CEEEEEEEEECCC
T ss_conf             6007888641798


No 88 
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=28.19  E-value=17  Score=12.55  Aligned_cols=11  Identities=36%  Similarity=0.564  Sum_probs=6.0

Q ss_pred             EEECCCCEEEE
Q ss_conf             78767868999
Q T0608           169 VVSMTDGVVTE  179 (279)
Q Consensus       169 V~A~~dG~V~~  179 (279)
                      |+...+|+|+.
T Consensus       209 i~~l~~G~iv~  219 (224)
T 2pcj_A          209 TLEMKDGKVVG  219 (224)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCEEEE
T ss_conf             99996999999


No 89 
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=28.00  E-value=17  Score=12.53  Aligned_cols=48  Identities=19%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC-CEEECCCEEEEE
Q ss_conf             786899975238983599998089769997512665524688-786067268743
Q T0608           173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG-DPVKAGDLLGYM  226 (279)
Q Consensus       173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G-~~V~~Ge~IG~v  226 (279)
                      .-|+|..=....|||- |.-+  +| .-+|-|.+.+ . ..| ..+..||.+-+.
T Consensus         2 ~~G~Vkwf~~~kGfGF-I~~d--~g-~DvFvH~s~i-~-~~g~~~l~~G~~V~f~   50 (73)
T 3a0j_A            2 QKGRVKWFNAEKGYGF-IERE--GD-TDVFVHYTAI-N-AKGFRTLNEGDIVTFD   50 (73)
T ss_dssp             EEEEEEEEETTTTEEE-EECT--TS-CCEEEEGGGB-C-SSSCSSCCTTCEEEEE
T ss_pred             CCEEEEEEECCCCEEE-EECC--CC-CEEEEEEHHH-C-CCCCCCCCCCCEEEEE
T ss_conf             9828999959998688-3048--99-7099983671-5-1379868999999999


No 90 
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str}
Probab=26.79  E-value=18  Score=12.36  Aligned_cols=45  Identities=18%  Similarity=0.066  Sum_probs=18.4

Q ss_pred             CCCCEEEEEEE-CCCCCEEEEEEECC-CEEEEEEECCCCCCCCCCCEE
Q ss_conf             67868999752-38983599998089-769997512665524688786
Q T0608           172 MTDGVVTEKGW-LEKGGWRIGITAPT-GAYFYYAHLDSYAELEKGDPV  217 (279)
Q Consensus       172 ~~dG~V~~a~~-~~~yGn~ViI~Hg~-G~~T~Y~HL~~i~~V~~G~~V  217 (279)
                      +..|.+.+||+ ++|||.......|+ ...-+..|-..+ .++.||.|
T Consensus       286 ~~~~~~~~Agf~DpGfgg~~~~~~g~~~vLev~~~~~p~-~l~~G~~I  332 (370)
T 2r9q_A          286 VGEFRVHYAGFFDPGFGHAQAGGTGSRAVLEVRSHEVPF-ILEHGQIV  332 (370)
T ss_dssp             TTTEEEESCCEECTTTTC-----CCEEEEEEEEECSSCE-EEETTCEE
T ss_pred             HCCCEEEECCEECCCCCCCCCCCCCCEEEEEEECCCCCE-EEECCCEE
T ss_conf             147357725507589776445567865999993588886-97089999


No 91 
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=26.45  E-value=18  Score=12.32  Aligned_cols=32  Identities=13%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             CEEECCCCEEEEEEECC----------CCCEEEEEEECCCEE
Q ss_conf             77876786899975238----------983599998089769
Q T0608           168 PVVSMTDGVVTEKGWLE----------KGGWRIGITAPTGAY  199 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~----------~yGn~ViI~Hg~G~~  199 (279)
                      -|....+|.|+.-|...          .|+.-|.|.+-++.+
T Consensus       232 rvivl~~G~iv~~G~~~dv~~~e~~~~~y~~~~~i~~~~~~~  273 (279)
T 2ihy_A          232 KILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRF  273 (279)
T ss_dssp             EEEEEETTEEEEEEEHHHHCSHHHHHHHHTSCEEEEEETTEE
T ss_pred             EEEEEECCEEEEECCHHHHHCCHHHHHHHCCCCEEEEECCEE
T ss_conf             999998998999838999827977999857861168789982


No 92 
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A
Probab=25.27  E-value=19  Score=12.16  Aligned_cols=11  Identities=27%  Similarity=0.896  Sum_probs=5.9

Q ss_pred             ECCCEEEEEEC
Q ss_conf             06726874306
Q T0608           218 KAGDLLGYMGD  228 (279)
Q Consensus       218 ~~Ge~IG~vG~  228 (279)
                      +.|++||+-||
T Consensus       192 ~~G~VVGLYGN  202 (236)
T 3lkw_A          192 REGKIVGLYGN  202 (236)
T ss_dssp             TTSCEEEESCC
T ss_pred             CCCCEEEEECC
T ss_conf             89979998535


No 93 
>2qam_W 50S ribosomal protein L27; RNA-protein complex, ribosome; HET: NMY; 3.21A {Escherichia coli} SCOP: b.84.4.1 PDB: 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* 2qp1_W* ...
Probab=24.78  E-value=11  Score=14.04  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=19.6

Q ss_pred             CCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE
Q ss_conf             74444204702667988888778767868999752
Q T0608           148 GKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW  182 (279)
Q Consensus       148 ~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~  182 (279)
                      ..++|.|.-...-...+    ++|..||+|.|...
T Consensus        41 Gtk~hPG~nVg~GkD~T----LfAl~~G~V~F~~~   71 (84)
T 2qam_W           41 GTKFHAGANVGCGRDHT----LFAKADGKVKFEVK   71 (84)
T ss_dssp             SSSCBCTTCCCCCTTCC----BCCCSSSCCCCCCC
T ss_pred             CCCEECCCCEEECCCCC----EEECCCEEEEEEEE
T ss_conf             77370888720878774----78703679998694


No 94 
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Probab=24.78  E-value=19  Score=12.09  Aligned_cols=10  Identities=30%  Similarity=0.850  Sum_probs=4.0

Q ss_pred             CCCEEEEEEC
Q ss_conf             6726874306
Q T0608           219 AGDLLGYMGD  228 (279)
Q Consensus       219 ~Ge~IG~vG~  228 (279)
                      .|++||+-||
T Consensus       143 ~G~vVGLYGN  152 (185)
T 2fom_B          143 KGKVVGLYGN  152 (185)
T ss_dssp             TSCEEEETTC
T ss_pred             CCCEEEEECC
T ss_conf             9869998656


No 95 
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure; 1.8A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=24.74  E-value=19  Score=12.08  Aligned_cols=13  Identities=23%  Similarity=0.307  Sum_probs=10.1

Q ss_pred             CCCEEEEEEECCC
Q ss_conf             9722589998178
Q T0608           241 PVHLHLGIYLKEG  253 (279)
Q Consensus       241 g~HLHfei~~~~~  253 (279)
                      .||+||-|+..|.
T Consensus       132 ~~HIH~~V~~~g~  144 (209)
T 2bum_A          132 APHISLIIFARGI  144 (209)
T ss_dssp             CCCEEEEEECTTC
T ss_pred             CCEEEEEEEECCC
T ss_conf             8558999995980


No 96 
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.17  E-value=19  Score=12.00  Aligned_cols=32  Identities=31%  Similarity=0.226  Sum_probs=12.2

Q ss_pred             EEEEEECCCEEEEEEECCCCCCCCCCCEEECCC
Q ss_conf             999980897699975126655246887860672
Q T0608           189 RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD  221 (279)
Q Consensus       189 ~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge  221 (279)
                      +|+|.|...... |..++.+.-+..|..|..|+
T Consensus       217 ii~isH~~~~~~-~~~~Dri~vl~~G~iv~~G~  248 (267)
T 2zu0_C          217 FIIVTHYQRILD-YIKPDYVHVLYQGRIVKSGD  248 (267)
T ss_dssp             EEEECSSGGGGG-TSCCSEEEEEETTEEEEEEC
T ss_pred             EEEEEECHHHHH-HHCCCEEEEEECCEEEEECC
T ss_conf             999993669886-65499999998998999949


No 97 
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=24.15  E-value=19  Score=12.00  Aligned_cols=46  Identities=20%  Similarity=0.223  Sum_probs=26.6

Q ss_pred             EECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEE
Q ss_conf             8767868999752389835999980897699975126655246887860
Q T0608           170 VSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVK  218 (279)
Q Consensus       170 ~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~  218 (279)
                      .-...|+|....+.++ -..+.++.+++..+++.+- .. .++.|+.|.
T Consensus       294 ~~~~~~~V~~~~~~G~-~~~v~~~~~~~~~~~~~~~-~~-~l~~G~~v~  339 (353)
T 1oxx_K          294 ILVGKGKVKVIGYQGG-LFRITITPLDSEEEIFTYS-DH-PIHSGEEVL  339 (353)
T ss_dssp             EEEEEEEEEEEEEETT-EEEEEEEETTCCCCEEEEE-SS-CCCTTCEEE
T ss_pred             CCEEEEEEEEEEEECC-EEEEEEEECCCEEEEEECC-CC-CCCCCCEEE
T ss_conf             4146799999999689-2999999899769999868-88-939899999


No 98 
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=23.48  E-value=20  Score=11.90  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=13.6

Q ss_pred             CCCCEEECCCEEEEEECCCCC
Q ss_conf             688786067268743065344
Q T0608           212 EKGDPVKAGDLLGYMGDSGYG  232 (279)
Q Consensus       212 ~~G~~V~~Ge~IG~vG~TG~s  232 (279)
                      ++|+.|++|+.+|.+-+....
T Consensus        45 ~~g~~v~~g~~~~~vEs~k~~   65 (131)
T 1hpc_A           45 EPGVSVTKGKGFGAVESVKAT   65 (131)
T ss_dssp             CTTCEECBTSEEEEEEESSCE
T ss_pred             CCCCEECCCCEEEEEEECCEE
T ss_conf             999854289869999974305


No 99 
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=23.33  E-value=20  Score=11.88  Aligned_cols=29  Identities=31%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             CCCCCCEE-ECCCEEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf             24688786-06726874306534467777888972258
Q T0608           210 ELEKGDPV-KAGDLLGYMGDSGYGEEGTTGEFPVHLHL  246 (279)
Q Consensus       210 ~V~~G~~V-~~Ge~IG~vG~TG~st~~~~~~~g~HLHf  246 (279)
                      .+++||.| +=|++||..-.        +-..|-|+|-
T Consensus        69 ~I~~Ge~ViKYG~~IG~A~~--------dI~~GehVHt   98 (105)
T 3k3s_A           69 DIAKGANVIKYGLPIGYALA--------DIAAGEHVHA   98 (105)
T ss_dssp             CBCTTCEEEETTEEEEEESS--------CBCTTCEEST
T ss_pred             HCCCCCEEEECCCEEEEECC--------CCCCCCEEEE
T ss_conf             02599983878958278814--------2679988873


No 100
>2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} SCOP: b.47.1.3
Probab=22.32  E-value=21  Score=11.73  Aligned_cols=10  Identities=40%  Similarity=1.026  Sum_probs=4.0

Q ss_pred             CCCEEEEEEC
Q ss_conf             6726874306
Q T0608           219 AGDLLGYMGD  228 (279)
Q Consensus       219 ~Ge~IG~vG~  228 (279)
                      .|++||+-||
T Consensus       128 ~G~vVGLYGn  137 (172)
T 2fp7_B          128 NGDVIGLYGN  137 (172)
T ss_dssp             TSCEEEESCC
T ss_pred             CCCEEEEECC
T ss_conf             8969998535


No 101
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.20  E-value=19  Score=12.12  Aligned_cols=49  Identities=24%  Similarity=0.305  Sum_probs=27.7

Q ss_pred             EEECCCCEEEEEEECCCCCEEEEEEE--CCCEEEEEEECCCCC---------CCCCCCEEECCCEEEE
Q ss_conf             78767868999752389835999980--897699975126655---------2468878606726874
Q T0608           169 VVSMTDGVVTEKGWLEKGGWRIGITA--PTGAYFYYAHLDSYA---------ELEKGDPVKAGDLLGY  225 (279)
Q Consensus       169 V~A~~dG~V~~a~~~~~yGn~ViI~H--g~G~~T~Y~HL~~i~---------~V~~G~~V~~Ge~IG~  225 (279)
                      +..+..|+|....   .||-+|.|.-  -+|    ..|++++.         .++.||.|+. .+|..
T Consensus        22 ~~~I~~G~V~~V~---~fG~FV~l~g~~~dG----lvhisels~~~v~~~~~~~~vGd~V~v-kVi~i   81 (119)
T 2cqo_A           22 LYTIFQGEVAMVT---DYGAFIKIPGCRKQG----LVHRTHMSSCRVDKPSEIVDVGDKVWV-KLIGR   81 (119)
T ss_dssp             TTCEEEEEEEEEE---TTEEEEECTTCSSCE----EEEHHHHCSSCCSCHHHHCCTTCEEEE-EEEEE
T ss_pred             CCCEEEEEEEEEE---CCEEEEEECCCCEEE----EEEEHHCCCCCCCCHHHEECCCCEEEE-EEEEE
T ss_conf             7847999999995---568899937974357----861011045566798780279999999-99999


No 102
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=22.10  E-value=5.1  Score=17.05  Aligned_cols=53  Identities=28%  Similarity=0.230  Sum_probs=23.0

Q ss_pred             CEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEE
Q ss_conf             778767868999752389835999980897699975-12665524688786067268
Q T0608           168 PVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLL  223 (279)
Q Consensus       168 PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~I  223 (279)
                      ||.+-.+|.|......   ....++.-..+...-|. .....+.|+.||.|++||.|
T Consensus      1013 ~ii~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~ip~~~~l~v~~gd~v~~g~~l 1066 (1265)
T 1hqm_D         1013 AVISEIDGVVRIEEGE---DRLSVFVESEGFSKEYKLPKDARLLVKDGDYVEAGQPL 1066 (1265)
T ss_dssp             BCCCSSSCBCCCCCCS---SCCCCCCBCSSCCCCCCCSSCCCCCCCSCCSSTTCSCC
T ss_pred             CEEECCCCEEEEEECC---CEEEEEECCCCEEEEEEECCCCEEEECCCCEEECCCEE
T ss_conf             3597579759997078---55999978998289999679998986599998079998


No 103
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=22.08  E-value=21  Score=11.69  Aligned_cols=13  Identities=15%  Similarity=0.286  Sum_probs=10.2

Q ss_pred             CCCEEEEEEECCC
Q ss_conf             9722589998178
Q T0608           241 PVHLHLGIYLKEG  253 (279)
Q Consensus       241 g~HLHfei~~~~~  253 (279)
                      |.|+|+.+|-.++
T Consensus       267 G~H~H~Sl~~~g~  279 (468)
T 1f52_A          267 GMHCHMSLAKNGT  279 (468)
T ss_dssp             CEEEEEEEEETTE
T ss_pred             EEEEEECCCCCCC
T ss_conf             1479972456998


No 104
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=21.99  E-value=21  Score=11.68  Aligned_cols=27  Identities=22%  Similarity=0.090  Sum_probs=10.7

Q ss_pred             EECCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf             8767868999752389835999980897
Q T0608           170 VSMTDGVVTEKGWLEKGGWRIGITAPTG  197 (279)
Q Consensus       170 ~A~~dG~V~~a~~~~~yGn~ViI~Hg~G  197 (279)
                      .....|+|+...+.+. -..|.++-|..
T Consensus       288 ~~~l~~~V~~~~~~g~-~~~v~~~~g~~  314 (348)
T 3d31_A          288 RNSLQGRVTEAWVLGA-LVRVKVDCGVP  314 (348)
T ss_dssp             SEEEEEEEEEEEECSS-EEEEEEESSSE
T ss_pred             CCEEEEEEEEEEEECC-EEEEEEEECCE
T ss_conf             6669999999999299-89999972996


No 105
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=21.90  E-value=21  Score=11.66  Aligned_cols=53  Identities=15%  Similarity=0.049  Sum_probs=27.9

Q ss_pred             CCCEEECCCEEEEEECCCCCCC-CCCCC--CCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf             8878606726874306534467-77788--897225899981788863217089998
Q T0608           213 KGDPVKAGDLLGYMGDSGYGEE-GTTGE--FPVHLHLGIYLKEGTEEISVNPYPVLR  266 (279)
Q Consensus       213 ~G~~V~~Ge~IG~vG~TG~st~-~~~~~--~g~HLHfei~~~~~~~~~~vnP~~~l~  266 (279)
                      .-=.+++|+.+|.+|.||..-+ .-.--  .=+.-+=+|+++|. +-..+||..+-+
T Consensus       362 inl~i~~G~~iaIvG~sGsGKSTLl~lL~g~~~p~~G~i~i~g~-~~~~~~~~~~r~  417 (582)
T 3b60_A          362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH-DLREYTLASLRN  417 (582)
T ss_dssp             EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE-ETTTBCHHHHHH
T ss_pred             EECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC-CCCCCCHHHHHH
T ss_conf             50144688779986799974657999983567877873886561-366576556641


No 106
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12
Probab=21.67  E-value=21  Score=11.63  Aligned_cols=13  Identities=23%  Similarity=0.654  Sum_probs=5.2

Q ss_pred             EEECCCCEEEEEE
Q ss_conf             7876786899975
Q T0608           169 VVSMTDGVVTEKG  181 (279)
Q Consensus       169 V~A~~dG~V~~a~  181 (279)
                      |.-..+|+|+..|
T Consensus       216 v~vl~~G~iv~~g  228 (256)
T 1vpl_A          216 IALIHNGTIVETG  228 (256)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEC
T ss_conf             9999599999993


No 107
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens}
Probab=21.63  E-value=22  Score=11.62  Aligned_cols=44  Identities=18%  Similarity=0.202  Sum_probs=21.3

Q ss_pred             CCEEEEEEECCCCCEEEEEEE-CCCEEEEEEECCCCCCCCCCCEEECCCEEEE
Q ss_conf             868999752389835999980-8976999751266552468878606726874
Q T0608           174 DGVVTEKGWLEKGGWRIGITA-PTGAYFYYAHLDSYAELEKGDPVKAGDLLGY  225 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~H-g~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~  225 (279)
                      -|+|..  +..+||   .|.. .++-.-+|-|.+.+ .  .....+.||.+-+
T Consensus        10 ~G~v~~--~k~~fG---FI~~~d~~g~dvFfH~s~v-~--~~~~l~~Gd~V~F   54 (79)
T 2ytv_A           10 RATVEC--VKDQFG---FINYEVGDSKKLFFHVKEV-Q--DGIELQAGDEVEF   54 (79)
T ss_dssp             CEEEEE--CCSSEE---EESCCCSSSSSEEEETTTC-C--SSCCCCTTCEEEC
T ss_pred             EEEEEE--ECCCCC---EEECCCCCCCEEEEEHHHC-C--CCCCCCCCCEEEE
T ss_conf             799999--868862---3772589995899998993-7--9974799999999


No 108
>3d4r_A Domain of unknown function from the PFAM-B_34464 family; NP_987166.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=21.58  E-value=22  Score=11.61  Aligned_cols=42  Identities=21%  Similarity=0.029  Sum_probs=23.3

Q ss_pred             EEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEEEEECCC
Q ss_conf             5999980897699975-126655246887860672687430653
Q T0608           188 WRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLGYMGDSG  230 (279)
Q Consensus       188 n~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG~vG~TG  230 (279)
                      +.+.|+-|.-+..+=+ +....+-+..|+.|.+|+.+|++= ||
T Consensus        92 ~~~~lkkGt~L~lvpaeG~~v~~i~~~G~rV~egd~lA~i~-T~  134 (169)
T 3d4r_A           92 TLTYLKAGTKLISVPAEGYKVYPIMDFGFRVLKGYRLATLE-SK  134 (169)
T ss_dssp             EEEEECTTCBCEEEEECSSEEEECCCCSEEECTTCEEEEEE-CT
T ss_pred             EEEEECCCCEEEEEECCCEEEEEECCCCCEEECCCEEEEEE-EC
T ss_conf             68998699999999828579999746553771286279998-16


No 109
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=21.55  E-value=22  Score=11.61  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=18.0

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCE-EEEEEECCCCCCCCCCCEEE
Q ss_conf             8689997523898359999808976-99975126655246887860
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGA-YFYYAHLDSYAELEKGDPVK  218 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~-~T~Y~HL~~i~~V~~G~~V~  218 (279)
                      .|+|+...+.+ -...+.++-++|- .++... +. ...++|+.|.
T Consensus       297 ~~~V~~~~~~G-~~~~v~l~~~~g~~~~~~~~-~~-~~~~~G~~v~  339 (359)
T 2yyz_A          297 PGVVYVVEPLG-RDIIVNVKTEKGEIIKVFGD-TG-KAPQPGENVF  339 (359)
T ss_dssp             EEEEEEEEEET-TEEEEEEEETTSCEEEEECC-SS-CCCCTTCEEE
T ss_pred             EEEEEEEEEEC-CEEEEEEEECCCCEEEEECC-CC-CCCCCCCEEE
T ss_conf             99999999969-93999999899869999908-98-8999899999


No 110
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus}
Probab=21.55  E-value=22  Score=11.61  Aligned_cols=11  Identities=36%  Similarity=0.443  Sum_probs=4.0

Q ss_pred             CCCEEECCCCEE
Q ss_conf             887787678689
Q T0608           166 YYPVVSMTDGVV  177 (279)
Q Consensus       166 ~~PV~A~~dG~V  177 (279)
                      +.||. -.+|.|
T Consensus       140 GSPIi-~~~G~v  150 (198)
T 3e90_B          140 GSPIV-DKNGDV  150 (198)
T ss_dssp             TCEEE-CTTCCE
T ss_pred             CCCEE-CCCCCE
T ss_conf             99647-458969


No 111
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris CGA009}
Probab=21.18  E-value=22  Score=11.55  Aligned_cols=28  Identities=18%  Similarity=-0.001  Sum_probs=20.4

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCEEEE
Q ss_conf             8689997523898359999808976999
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGAYFY  201 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~  201 (279)
                      .+..+.+...-+.++.|.|.|++-.+.+
T Consensus        28 ~~~~i~S~~L~~~~~~v~I~H~g~~Y~L   55 (67)
T 2jra_A           28 VGNQIDSRELFTVDREIVIAHGDDRYRL   55 (67)
T ss_dssp             ETTEEEHHHHTTSSSEEEEEETTEEEEE
T ss_pred             CCCCCCHHHHHCCCCEEEEEECCEEEEE
T ss_conf             6561079998489978999979908997


No 112
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=21.17  E-value=22  Score=11.55  Aligned_cols=42  Identities=17%  Similarity=0.116  Sum_probs=17.4

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCC--CCCCCCCCEE
Q ss_conf             8689997523898359999808976999751266--5524688786
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDS--YAELEKGDPV  217 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~--i~~V~~G~~V  217 (279)
                      .|+|+...+. |-...|.++-++|- .+-.|...  .....+|+.|
T Consensus       300 ~~~V~~~~~~-G~~~~v~~~~~~g~-~l~v~~~~~~~~~~~~g~~V  343 (355)
T 1z47_A          300 HAQVVRSAFK-GSYSACWIRTKDGE-VWEVHVPSADRHRWSPGAWV  343 (355)
T ss_dssp             SEEEEEEEEC-SSSEEEEEEETTSC-EEEEEECGGGTTTCCTTCEE
T ss_pred             EEEEEEEEEE-CCCEEEEEEECCCC-EEEEEECCCCCCCCCCCCEE
T ss_conf             9999999995-89199999989898-99999737424689999699


No 113
>2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} SCOP: d.13.1.1
Probab=20.86  E-value=22  Score=11.50  Aligned_cols=15  Identities=13%  Similarity=0.231  Sum_probs=11.4

Q ss_pred             CCCEEEEEEECCCCC
Q ss_conf             972258999817888
Q T0608           241 PVHLHLGIYLKEGTE  255 (279)
Q Consensus       241 g~HLHfei~~~~~~~  255 (279)
                      -||||+-|.-+-..+
T Consensus        94 v~HlH~HiiPR~~~D  108 (154)
T 2oik_A           94 TPHVHWHVIPRFKRD  108 (154)
T ss_dssp             SCSCEEEEEEECTTS
T ss_pred             CCEEEEEEECCCCCC
T ss_conf             788999995266788


No 114
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=20.83  E-value=13  Score=13.62  Aligned_cols=31  Identities=26%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             CCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE
Q ss_conf             74444204702667988888778767868999752
Q T0608           148 GKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW  182 (279)
Q Consensus       148 ~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~  182 (279)
                      +.++|.|.....-...+    ++|..||+|.|...
T Consensus        99 GTkfhPG~NVg~GkD~T----LfAl~~G~V~F~~~  129 (198)
T 3bbo_X           99 GTKFHAGKNVGIGKDHT----IFSLIDGLVKFEKF  129 (198)
T ss_dssp             CCSSCCCCSSSSCCCCC----SBCCSCCCCCSSSS
T ss_pred             CCCCCCCCCCCCCCCCE----EEEECCEEEEEEEC
T ss_conf             78463898803888880----78715679999985


No 115
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=20.51  E-value=23  Score=11.45  Aligned_cols=55  Identities=18%  Similarity=0.101  Sum_probs=29.3

Q ss_pred             CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEE---CCCEEEEEECCC
Q ss_conf             7868999752389835999980897699975126655246887860---672687430653
Q T0608           173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVK---AGDLLGYMGDSG  230 (279)
Q Consensus       173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~---~Ge~IG~vG~TG  230 (279)
                      ..|+|....+.+. -..+.++.++...++-..  .-..++.|+.|.   ..+.+=+-|+|-
T Consensus       295 l~~~V~~~~~~G~-~~~v~~~~~~~~l~~~~~--~~~~~~~g~~v~l~~~~~~l~f~~~t~  352 (359)
T 3fvq_A          295 IHAVVLKTTPKAR-HTEISLRAGQTVLTLNLP--SAPTLSDGISAVLHLDGPALFFPGNTL  352 (359)
T ss_dssp             EEEEEEEEEECSS-SEEEEEEETTEEEEEEC-------CCTTCEEEEEECSCEEEEEC---
T ss_pred             EEEEEEEEEEECC-EEEEEEEECCEEEEEEEC--CCCCCCCCCEEEEEECCCEEECCCCCC
T ss_conf             8999999999799-899999989999999979--999999899999998871398899976


No 116
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.41  E-value=23  Score=11.43  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC-CEEECCCEEEE
Q ss_conf             86899975238983599998089769997512665524688-78606726874
Q T0608           174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG-DPVKAGDLLGY  225 (279)
Q Consensus       174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G-~~V~~Ge~IG~  225 (279)
                      .|+|..=....||| +|.-+  +| .-+|-|.+.+ . ..| +.+..||.+-+
T Consensus         2 ~G~Vk~f~~~kGyG-FI~~~--~g-~diF~H~s~l-~-~~~~~~L~~G~~V~f   48 (66)
T 1g6p_A            2 RGKVKWFDSKKGYG-FITKD--EG-GDVFVHWSAI-E-MEGFKTLKEGQVVEF   48 (66)
T ss_dssp             CEEEEEEETTTTEE-EEEET--TS-CBCBBCSSSS-C-CSSCCCCCSSSEEEE
T ss_pred             EEEEEEEECCCCEE-EEECC--CC-CEEEEEEHHH-C-CCCCCCCCCCCEEEE
T ss_conf             48999995999988-98728--99-7799991883-4-247887899999999


No 117
>3pcg_M Protocatechuate 3,4-dioxygenase; iron, nonheme, metalloprotein, oxidoreductase; HET: 4HP; 1.96A {Pseudomonas putida} SCOP: b.3.6.1 PDB: 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 1ykp_B* 1yko_B* 3pcd_M 1ykn_B* 1ykm_B* 1ykk_B* 1ykl_B*
Probab=20.07  E-value=23  Score=11.37  Aligned_cols=25  Identities=8%  Similarity=-0.036  Sum_probs=15.3

Q ss_pred             CCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf             6786899975238983599998089
Q T0608           172 MTDGVVTEKGWLEKGGWRIGITAPT  196 (279)
Q Consensus       172 ~~dG~V~~a~~~~~yGn~ViI~Hg~  196 (279)
                      .-.|+|.-..-..--|-+|.|=|.|
T Consensus        79 ~v~GrV~D~~g~Pv~~A~VEiWQAd  103 (238)
T 3pcg_M           79 IVAGRVVDQYGKPVPNTLVEMWQAN  103 (238)
T ss_dssp             EEEEEEEETTSCBCTTCEEEEECCC
T ss_pred             EEEEEEECCCCCCCCCCEEEEEECC
T ss_conf             9999998499988178679998579


Done!