Query T0608 ZP_02041710.1, Ruminococcus gnavus, 279 residues Match_columns 279 No_of_seqs 132 out of 1949 Neff 8.5 Searched_HMMs 22458 Date Mon Jul 5 09:09:25 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0608.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0608.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2gu1_A Zinc peptidase; alpha/b 100.0 2.1E-33 9.5E-38 304.9 14.5 123 125-263 201-327 (361) 2 2hsi_A Putative peptidase M23; 100.0 1.4E-30 6.3E-35 280.5 12.8 131 124-270 152-282 (282) 3 1qwy_A Peptidoglycan hydrolase 99.9 1.7E-27 7.5E-32 254.0 11.5 126 124-266 162-289 (291) 4 3csq_A Morphogenesis protein 1 99.8 3.6E-20 1.6E-24 190.8 11.7 107 131-253 175-288 (334) 5 3it5_A Protease LASA; metallop 99.8 3.8E-19 1.7E-23 181.9 12.6 105 142-263 22-136 (182) 6 2gpr_A Glucose-permease IIA co 96.5 0.0011 4.9E-08 48.7 2.9 93 126-228 10-112 (154) 7 1f3z_A EIIA-GLC, glucose-speci 96.4 0.012 5.5E-07 39.6 7.5 93 126-228 15-117 (161) 8 1ax3_A Iiaglc, glucose permeas 96.4 0.0095 4.2E-07 40.6 6.8 93 126-228 15-117 (162) 9 1ci3_M Protein (cytochrome F); 96.1 0.015 6.8E-07 38.8 6.8 63 166-229 169-233 (249) 10 1q90_A Apocytochrome F; membra 95.6 0.029 1.3E-06 36.3 6.6 65 168-232 170-240 (292) 11 2jxm_B Cytochrome F; copper, e 94.9 0.045 2E-06 34.8 5.6 57 167-225 171-229 (249) 12 2auk_A DNA-directed RNA polyme 91.6 0.1 4.6E-06 31.6 3.1 64 164-227 83-186 (190) 13 1hcz_A Cytochrome F; electron 91.2 0.4 1.8E-05 26.5 5.8 63 166-230 168-234 (252) 14 1e2w_A Cytochrome F; electron 90.5 0.59 2.6E-05 25.1 6.1 62 167-230 169-235 (251) 15 2auk_A DNA-directed RNA polyme 88.1 0.6 2.7E-05 25.0 4.7 56 169-226 11-81 (190) 16 1dcz_A Transcarboxylase 1.3S s 82.0 2.1 9.5E-05 20.3 7.8 59 168-227 10-77 (77) 17 2d5d_A Methylmalonyl-COA decar 81.6 2.2 9.8E-05 20.2 7.0 58 169-227 8-74 (74) 18 3h5q_A PYNP, pyrimidine-nucleo 77.8 0.89 4E-05 23.6 2.1 52 168-228 340-402 (436) 19 2k32_A A; NMR {Campylobacter j 77.0 1.1 4.8E-05 22.8 2.3 34 168-230 69-103 (116) 20 3bg3_A Pyruvate carboxylase, m 74.4 2.1 9.3E-05 20.3 3.2 57 168-225 651-716 (718) 21 1bdo_A Acetyl-COA carboxylase; 74.3 1.4 6E-05 22.0 2.3 16 210-225 63-78 (80) 22 3cdx_A Succinylglutamatedesucc 72.8 1.6 7.1E-05 21.4 2.3 17 210-226 281-297 (354) 23 3fmc_A Putative succinylglutam 72.6 2.4 0.00011 19.9 3.2 20 210-229 304-323 (368) 24 2k7v_A Dihydrolipoyllysine-res 72.1 2.4 0.00011 19.8 3.1 28 206-234 51-78 (85) 25 1pmr_A Dihydrolipoyl succinylt 70.8 2 8.9E-05 20.5 2.4 21 206-227 57-77 (80) 26 1qjo_A Dihydrolipoamide acetyl 70.0 2.1 9.2E-05 20.4 2.4 25 206-231 55-79 (80) 27 2qj8_A MLR6093 protein; NP_106 69.4 2.1 9.3E-05 20.4 2.3 22 209-230 270-291 (332) 28 1gjx_A Pyruvate dehydrogenase; 69.4 2 8.9E-05 20.5 2.2 40 191-231 37-80 (81) 29 2kcc_A Acetyl-COA carboxylase 69.4 2 9.1E-05 20.4 2.3 17 211-227 57-73 (84) 30 2dn8_A Acetyl-COA carboxylase 69.3 4.2 0.00019 17.7 6.9 60 168-227 19-85 (100) 31 1ghj_A E2, E2, the dihydrolipo 67.9 2.8 0.00012 19.3 2.7 38 192-230 38-79 (79) 32 3hbl_A Pyruvate carboxylase; T 67.4 2.5 0.00011 19.8 2.3 15 211-225 1130-1144(1150) 33 2dne_A Dihydrolipoyllysine-res 66.8 2.8 0.00013 19.2 2.5 25 206-231 62-87 (108) 34 2dnc_A Pyruvate dehydrogenase 66.6 4.7 0.00021 17.3 3.8 44 189-233 41-89 (98) 35 1y8o_B Dihydrolipoyllysine-res 66.2 2.7 0.00012 19.5 2.3 29 203-232 79-108 (128) 36 3crk_C Dihydrolipoyllysine-res 64.8 3.1 0.00014 18.9 2.4 26 204-230 58-84 (87) 37 1k8m_A E2 component of branche 63.3 5 0.00022 17.1 3.3 26 207-233 60-85 (93) 38 2ejm_A Methylcrotonoyl-COA car 63.2 5.4 0.00024 16.8 6.7 59 169-228 17-84 (99) 39 2jku_A Propionyl-COA carboxyla 63.2 1.7 7.7E-05 21.1 0.9 16 210-225 77-92 (94) 40 2k5n_A Putative cold-shock pro 61.1 5.8 0.00026 16.5 3.8 32 173-208 3-34 (74) 41 1vf5_C Cytochrome F; photosynt 56.7 0.6 2.7E-05 25.0 -2.4 74 167-251 170-250 (289) 42 2zbv_A Uncharacterized conserv 56.2 6.5 0.00029 16.1 2.9 24 216-253 222-245 (263) 43 1z6h_A Biotin/lipoyl attachmen 55.4 7 0.00031 15.8 7.2 22 207-229 49-70 (72) 44 1uou_A Thymidine phosphorylase 55.1 5.3 0.00023 16.9 2.2 54 168-230 374-436 (474) 45 2q6k_A Chlorinase; complex wit 53.6 7.4 0.00033 15.6 4.6 19 213-231 227-245 (283) 46 1brw_A PYNP, protein (pyrimidi 53.0 6 0.00027 16.4 2.2 53 168-229 337-400 (433) 47 2dsj_A Pyrimidine-nucleoside ( 52.1 6.3 0.00028 16.2 2.2 53 168-229 329-392 (423) 48 2tpt_A Thymidine phosphorylase 48.3 6.1 0.00027 16.3 1.7 53 168-229 342-405 (440) 49 1yqt_A RNAse L inhibitor; ATP- 47.6 5.6 0.00025 16.7 1.4 17 216-232 308-324 (538) 50 1zy8_K Pyruvate dehydrogenase 46.6 3.2 0.00014 18.8 0.0 12 152-163 141-152 (229) 51 2ff7_A Alpha-hemolysin translo 46.5 8.2 0.00037 15.2 2.1 13 169-181 213-225 (247) 52 2cbz_A Multidrug resistance-as 46.3 8.3 0.00037 15.2 2.1 16 205-220 195-210 (237) 53 2pze_A Cystic fibrosis transme 45.7 8.6 0.00038 15.0 2.1 12 169-180 199-210 (229) 54 1h95_A CSD, Y-box binding prot 45.1 9.7 0.00043 14.6 4.2 32 174-208 10-41 (79) 55 2d2e_A SUFC protein; ABC-ATPas 44.7 9.1 0.00041 14.8 2.1 32 188-220 195-226 (250) 56 3cam_A Cold-shock domain famil 44.7 9.9 0.00044 14.5 3.1 48 173-225 2-50 (67) 57 2a6h_D DNA-directed RNA polyme 44.6 9.9 0.00044 14.5 6.2 55 167-224 1271-1326(1524) 58 1v8q_A TT0826; structural geno 44.4 9.4 0.00042 14.7 2.1 30 149-182 43-72 (85) 59 2ftc_O L27MT, MRP-L27, mitocho 43.0 8.7 0.00039 15.0 1.8 27 149-179 43-69 (69) 60 2qf7_A Pyruvate carboxylase pr 42.8 10 0.00046 14.3 6.7 59 168-227 1097-1164(1165) 61 1iyu_A E2P, dihydrolipoamide a 42.2 11 0.00047 14.3 5.6 39 191-230 34-76 (79) 62 2ixe_A Antigen peptide transpo 40.3 11 0.0005 14.0 2.0 30 189-221 210-239 (271) 63 1l2t_A Hypothetical ABC transp 40.3 11 0.0005 14.0 2.1 19 168-186 214-232 (235) 64 2bbs_A Cystic fibrosis transme 39.6 12 0.00051 14.0 2.1 17 204-220 224-240 (290) 65 2ghi_A Transport protein; mult 39.5 12 0.00052 13.9 2.0 13 169-181 223-235 (260) 66 1mv5_A LMRA, multidrug resista 39.1 12 0.00052 13.9 2.0 31 188-221 190-220 (243) 67 1b0u_A Histidine permease; ABC 38.6 12 0.00053 13.8 2.1 13 169-181 223-235 (262) 68 2f4n_A Hypothetical protein MJ 37.5 12 0.00055 13.7 2.9 13 219-231 227-239 (273) 69 2qi9_C Vitamin B12 import ATP- 37.4 12 0.00055 13.7 2.1 14 169-182 203-216 (249) 70 3bk7_A ABC transporter ATP-bin 37.3 12 0.00055 13.7 3.0 17 216-232 378-394 (607) 71 1n8i_A Probable malate synthas 36.6 13 0.00057 13.6 1.8 49 218-277 213-261 (741) 72 2kcm_A Cold shock domain famil 36.4 13 0.00057 13.6 3.8 46 174-225 2-49 (74) 73 2yz2_A Putative ABC transporte 35.6 13 0.00058 13.5 2.0 15 206-220 206-220 (266) 74 1g6h_A High-affinity branched- 35.5 13 0.00059 13.5 2.1 13 169-181 223-235 (257) 75 3gd7_A Fusion complex of cysti 34.8 13 0.0006 13.4 2.1 44 174-218 320-363 (390) 76 2zjr_T 50S ribosomal protein L 33.6 14 0.00062 13.2 3.2 30 149-182 43-72 (91) 77 3g5u_A MCG1178, multidrug resi 32.7 14 0.00064 13.1 2.1 18 215-232 1054-1071(1284) 78 3gfo_A Cobalt import ATP-bindi 31.9 15 0.00066 13.0 2.1 15 168-182 213-227 (275) 79 2olj_A Amino acid ABC transpor 30.8 15 0.00068 12.9 2.0 13 169-181 229-241 (263) 80 1ok0_A Tendamistat, alpha-amyl 30.5 16 0.00069 12.8 3.2 58 129-188 7-66 (74) 81 2nwu_A UPF0201 protein SSO1042 30.4 16 0.00069 12.8 2.0 11 260-270 120-130 (155) 82 3dhw_C Methionine import ATP-b 30.1 16 0.0007 12.8 2.2 11 264-274 326-336 (343) 83 1x65_A UNR protein; cell-free 29.8 13 0.00057 13.6 0.9 43 175-225 11-53 (89) 84 2hyd_A ABC transporter homolog 29.3 16 0.00072 12.7 2.1 39 215-253 362-403 (578) 85 1ji0_A ABC transporter; ATP bi 28.6 17 0.00074 12.6 2.1 13 169-181 209-221 (240) 86 2j9i_A Glutamate-ammonia ligas 28.5 13 0.0006 13.4 0.8 13 241-253 229-241 (421) 87 2bvc_A Glutamine synthetase 1; 28.3 15 0.00065 13.1 1.0 13 241-253 282-294 (486) 88 2pcj_A ABC transporter, lipopr 28.2 17 0.00075 12.6 2.2 11 169-179 209-219 (224) 89 3a0j_A Cold shock protein; OB- 28.0 17 0.00075 12.5 3.8 48 173-226 2-50 (73) 90 2r9q_A AGR_C_764P, 2'-deoxycyt 26.8 18 0.00079 12.4 2.4 45 172-217 286-332 (370) 91 2ihy_A ABC transporter, ATP-bi 26.5 18 0.0008 12.3 2.1 32 168-199 232-273 (279) 92 3lkw_A Fusion protein of nonst 25.3 19 0.00083 12.2 3.0 11 218-228 192-202 (236) 93 2qam_W 50S ribosomal protein L 24.8 11 0.0005 14.0 -0.1 31 148-182 41-71 (84) 94 2fom_B Polyprotein; flavivirus 24.8 19 0.00085 12.1 2.8 10 219-228 143-152 (185) 95 2bum_A Protocatechuate 3,4-dio 24.7 19 0.00085 12.1 1.4 13 241-253 132-144 (209) 96 2zu0_C Probable ATP-dependent 24.2 19 0.00087 12.0 2.0 32 189-221 217-248 (267) 97 1oxx_K GLCV, glucose, ABC tran 24.1 19 0.00087 12.0 1.8 46 170-218 294-339 (353) 98 1hpc_A H protein of the glycin 23.5 20 0.00089 11.9 3.0 21 212-232 45-65 (131) 99 3k3s_A Altronate hydrolase; st 23.3 20 0.0009 11.9 2.7 29 210-246 69-98 (105) 100 2fp7_B Polyprotein; flavivirus 22.3 21 0.00093 11.7 2.6 10 219-228 128-137 (172) 101 2cqo_A Nucleolar protein of 40 22.2 19 0.00084 12.1 0.6 49 169-225 22-81 (119) 102 1hqm_D DNA-directed RNA polyme 22.1 5.1 0.00022 17.1 -2.3 53 168-223 1013-1066(1265) 103 1f52_A Glutamine synthetase; A 22.1 21 0.00094 11.7 1.0 13 241-253 267-279 (468) 104 3d31_A Sulfate/molybdate ABC t 22.0 21 0.00094 11.7 2.0 27 170-197 288-314 (348) 105 3b60_A Lipid A export ATP-bind 21.9 21 0.00095 11.7 2.3 53 213-266 362-417 (582) 106 1vpl_A ABC transporter, ATP-bi 21.7 21 0.00096 11.6 2.0 13 169-181 216-228 (256) 107 2ytv_A Cold shock domain-conta 21.6 22 0.00096 11.6 2.2 44 174-225 10-54 (79) 108 3d4r_A Domain of unknown funct 21.6 22 0.00096 11.6 2.0 42 188-230 92-134 (169) 109 2yyz_A Sugar ABC transporter, 21.6 22 0.00096 11.6 2.0 42 174-218 297-339 (359) 110 3e90_B NS3 protease; trypsin-l 21.5 22 0.00096 11.6 3.2 11 166-177 140-150 (198) 111 2jra_A Protein RPA2121; domain 21.2 22 0.00098 11.6 2.0 28 174-201 28-55 (67) 112 1z47_A CYSA, putative ABC-tran 21.2 22 0.00098 11.5 2.2 42 174-217 300-343 (355) 113 2oik_A Histidine triad (HIT) p 20.9 22 0.00099 11.5 3.4 15 241-255 94-108 (154) 114 3bbo_X Ribosomal protein L27; 20.8 13 0.00056 13.6 -0.5 31 148-182 99-129 (198) 115 3fvq_A Fe(3+) IONS import ATP- 20.5 23 0.001 11.4 2.2 55 173-230 295-352 (359) 116 1g6p_A Cold shock protein TMCS 20.4 23 0.001 11.4 3.3 46 174-225 2-48 (66) 117 3pcg_M Protocatechuate 3,4-dio 20.1 23 0.001 11.4 1.3 25 172-196 79-103 (238) No 1 >2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Probab=100.00 E-value=2.1e-33 Score=304.85 Aligned_cols=123 Identities=24% Similarity=0.222 Sum_probs=113.8 Q ss_pred CCCCCCC---CEEEECCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEE Q ss_conf 5557775---3278567887-78766874444204702667988888778767868999752389835999980897699 Q T0608 125 QSLDDTE---DKISYVDSWM-FERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYF 200 (279) Q Consensus 125 ~~~~p~~---g~iss~fg~r-~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T 200 (279) ...||+. ++++|+||+| .+|+.+..++|.||||+|+.|| ||+|++||+|+++||.++|||+|+|+|++||.| T Consensus 201 ~~~~P~~~~~~risS~f~~~~~~~~~~~~~~H~GiDiaa~~Gt----pV~A~~~G~V~~ag~~~gyG~~V~I~H~~g~~T 276 (361) T 2gu1_A 201 FNRYPVDKAYRQITSGFNPKRKHPVTGRVVPHNGTDFATPIGA----PVYSTGDGKVIVVRKHPYAGNYLVIEHNSVYKT 276 (361) T ss_dssp CCSCSSCGGGCCEEECCBTTCBCTTTCCBCCBCSEEECCCTTC----EEECSSSEEEEEEEEETTTEEEEEEECSSSEEE T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC----EEEEECCCEEEEEEECCCCCCEEEEECCCCEEE T ss_conf 3321011344433354565434333565323554588558997----404042744689860489788699982998599 Q ss_pred EEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH Q ss_conf 975126655246887860672687430653446777788897225899981788863217089 Q T0608 201 YYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYP 263 (279) Q Consensus 201 ~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~ 263 (279) +||||++++ |++||.|++||+||+|||||+|| ||||||||+.+| .||||+- T Consensus 277 ~YaHls~~~-V~~G~~V~~Gq~Ig~vG~TG~st-------gphLHFEir~~g----~~vdPl~ 327 (361) T 2gu1_A 277 RYLHLDKIL-VKKGQLVKRGQKIALAGATGRLT-------GPHLHFEVLVRN----RPVDAMK 327 (361) T ss_dssp EEEEESEEC-CCTTCEECTTCEEEECCCCSSCS-------SCCEEEEEEETT----EEECTTC T ss_pred EEECCCCEE-ECCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECC----EECCCCC T ss_conf 996543120-08899999899999876898878-------867899999899----7969972 No 2 >2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} Probab=99.97 E-value=1.4e-30 Score=280.54 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=122.8 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE Q ss_conf 65557775327856788778766874444204702667988888778767868999752389835999980897699975 Q T0608 124 PQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA 203 (279) Q Consensus 124 ~~~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~ 203 (279) ..+.||+.|++++.||.++++..+.+++|.||||+++.|| ||+|++||+|+++++...+||+|+|+||+||.|+|+ T Consensus 152 ~~~~~Pv~G~v~~~fG~~~~~~~~~~~~h~GiDi~~~~Gt----~V~A~~~G~V~~~~~~~~~g~~V~i~hg~g~~t~Y~ 227 (282) T 2hsi_A 152 LMLDKPVDGPLSSPFGLRRFFNGEERNPHSGLDFAVPAGT----PIKAPAAGKVILIGDYFFNGKTVFVDHGQGFISMFC 227 (282) T ss_dssp SSCCCSSSSCBCSCC------------CCCSEEECCCTTC----EEECSSCEEEEEEEEETTTEEEEEEEEETTEEEEEE T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCC----CCCCEECEEEEEECCCCCCCCEEEEECCCCEEEEEC T ss_conf 6665885388879989848888776766421698448998----423312449997435465880999987997699965 Q ss_pred ECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHC Q ss_conf 1266552468878606726874306534467777888972258999817888632170899988622 Q T0608 204 HLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAEN 270 (279) Q Consensus 204 HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~ 270 (279) ||+++ .|++||.|++||+||.||+||++| ||||||||+.++ .+|||..||.-++| T Consensus 228 hLs~i-~V~~G~~V~~G~~IG~vG~tG~~t-------gphLHfev~~~g----~~vdP~~~l~~~~p 282 (282) T 2hsi_A 228 HLSKI-DVKLGQQVPRGGVLGKVGATGRAT-------GPHMHWNVSLND----ARVDPAIFIGAFQP 282 (282) T ss_dssp EESEE-CSCTTCEECTTCEEEECCCTTTCS-------SCCEEEEEEETT----EEECHHHHHTCCC- T ss_pred CCCCC-CCCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECC----EEECHHHHHCCCCC T ss_conf 74703-638799999899799845899999-------867999999899----99896997671598 No 3 >1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A Probab=99.95 E-value=1.7e-27 Score=254.02 Aligned_cols=126 Identities=29% Similarity=0.448 Sum_probs=112.4 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEEC-CCCCEEEEEEECCC-EEEE Q ss_conf 655577753278567887787668744442047026679888887787678689997523-89835999980897-6999 Q T0608 124 PQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWL-EKGGWRIGITAPTG-AYFY 201 (279) Q Consensus 124 ~~~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~-~~yGn~ViI~Hg~G-~~T~ 201 (279) ....||+.|.++++||..+ ...+|.||||+++.|| ||+|++||+|+++++. .+||++|+|+|+++ +.++ T Consensus 162 ~~~~wp~~g~~~~~fG~~r-----gG~~H~GIDi~a~~Gt----pV~A~~dG~Vv~~g~~~~g~G~~ViI~h~~g~~~t~ 232 (291) T 1qwy_A 162 KDASWLTSRKQLQPYGQYH-----GGGAHYGVDYAMPENS----PVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQW 232 (291) T ss_dssp SSCHHHHTSCEEECSEECT-----TSSEECSEEEECCTTC----EEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEEE T ss_pred CCCCCCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCC----EEEECCCEEEEEEEECCCCCCEEEEEEECCCCEEEE T ss_conf 7420566786558868889-----7996583885889999----698012879999887467898699998489988999 Q ss_pred EEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH Q ss_conf 75126655246887860672687430653446777788897225899981788863217089998 Q T0608 202 YAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLR 266 (279) Q Consensus 202 Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~ 266 (279) |+||+++ .|++||.|++||+||+||+||+|+ ||||||||+..+.....+|||++||+ T Consensus 233 Y~HL~~i-~Vk~Gq~V~~Gq~IG~vG~TG~st-------gpHLHFEI~~~g~~~~~~VDP~~~L~ 289 (291) T 1qwy_A 233 YMHNNRL-TVSAGDKVKAGDQIAYSGSTGNST-------APHVHFQRMSGGIGNQYAVDPTSYLQ 289 (291) T ss_dssp EEEESEE-CCCTTCEECTTCEEEECCCCSSCS-------SSEEEEEEEESEESGGGEECCHHHHC T ss_pred EEECCCC-CCCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECCCCCCEECCCHHHHH T ss_conf 7878825-668889999789999868889989-------86689999989917987728699701 No 4 >3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29} Probab=99.83 E-value=3.6e-20 Score=190.84 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=87.2 Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCC---CEEEEEEECCCEEE----EEE Q ss_conf 53278567887787668744442047026679888887787678689997523898---35999980897699----975 Q T0608 131 EDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKG---GWRIGITAPTGAYF----YYA 203 (279) Q Consensus 131 ~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~y---Gn~ViI~Hg~G~~T----~Y~ 203 (279) ..++++.|+ ..+.|.|+|+....|...++||+|++||+|+++++..+| |++|+|.|.+|..+ +|+ T Consensus 175 ~~~~~~~~~--------~~~~h~g~d~~d~~~~~~~~pv~A~~~G~V~~~~~~~~~~~~g~~~~i~~~~g~~~~~~~~~~ 246 (334) T 3csq_A 175 IINISQGEN--------GSFSHKGTLCIDFVGKTEKYPYYAPCDCTCVWRGDASAYLAWTSDKEVMCADGSVRYITWVNV 246 (334) T ss_dssp EEEEEECTT--------CTTTCTTSCCEEECCSSSSCEEECSSSEEEEEEETTTTEEEEEESSCEECTTSCEECEEEEEE T ss_pred CCEEECCCC--------CCCCCCCEEEEECCCCCCCCEEEECCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEE T ss_conf 827960899--------998758856441169999971997899799998636776543776999967998579999999 Q ss_pred ECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 12665524688786067268743065344677778889722589998178 Q T0608 204 HLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEG 253 (279) Q Consensus 204 HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~ 253 (279) ||+++ .|++||.|++||+||+||+||+|| ||||||||+.... T Consensus 247 h~~~~-~v~~G~~V~~G~~ig~~G~tG~st-------gpHlHfev~~~~~ 288 (334) T 3csq_A 247 HESPL-PFDVGKKLKKGDLMGHTGIGGNVT-------GDHWHFNVIDGKE 288 (334) T ss_dssp CCSSC-CCCTTCEECTTSEEEECBCCC-----------CBEEEEEEESSC T ss_pred ECCCC-CCCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECCC T ss_conf 45625-689969978999899523898999-------9658999998981 No 5 >3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* Probab=99.81 E-value=3.8e-19 Score=181.94 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=82.3 Q ss_pred CCCCCCCCCCCCCEEECCCCCC--CCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEC Q ss_conf 7876687444420470266798--88887787678689997523898359999808976999751266552468878606 Q T0608 142 FERNYGGKRGHEGTDIMAEKNT--PGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKA 219 (279) Q Consensus 142 ~~p~~g~~~~H~GiDiaa~~GT--~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~ 219 (279) .++.++....|.|+|+.....+ ..+.||+|++||+|++++ |++|+|+|++|+.|+|+||+++ .|++||.|++ T Consensus 22 ~~~~~g~g~~~~g~d~~~g~~~~a~~g~~V~A~~~G~V~~~~-----g~~V~I~H~~G~~t~Y~Hl~~~-~V~~Gq~V~~ 95 (182) T 3it5_A 22 AHSNTGSGYPYSSFDASYDWPRWGSATYSVVAAHAGTVRVLS-----RCQVRVTHPSGWATNYYHMDQI-QVSNGQQVSA 95 (182) T ss_dssp CBCTTSSSSSCCEEEEESSCCCTTSCCCEEECSSSEEEEEEE-----TTEEEEECTTSEEEEEESEESC-CCCTTCEECT T ss_pred CCCCCCCCCCCCCEEECCCCCEECCCCCEEEEEECCEEEEEC-----CEEEEEEECCCCCCCEECCEEC-CCCCCCCCCC T ss_conf 655089788418886068986471799959997656577852-----7899997288346446413003-3126744148 Q ss_pred CCEEEEEE--------CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH Q ss_conf 72687430--------653446777788897225899981788863217089 Q T0608 220 GDLLGYMG--------DSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYP 263 (279) Q Consensus 220 Ge~IG~vG--------~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~ 263 (279) ||+||.+| +||+|| ||||||||+.++ ++|||.. T Consensus 96 Gq~IG~~g~~~~~~~g~tG~st-------gpHLHfei~~~g----~~v~~~~ 136 (182) T 3it5_A 96 DTKLGVYAGNINTALCEGGSST-------GPHLHFSLLYNG----AFVSLQG 136 (182) T ss_dssp TCEEEEECSSHHHHTTTSCCCS-------SSCEEEEEEETT----EECCCTT T ss_pred CCEEEEECCCCCCCCCCCCCCC-------CCEEEEEEEECC----EEECCCC T ss_conf 8388671476665315777768-------867899999899----8969998 No 6 >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Probab=96.55 E-value=0.0011 Score=48.67 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=62.2 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC Q ss_conf 55777532785678877876687444420470266798888877876786899975238983599998089769997512 Q T0608 126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL 205 (279) Q Consensus 126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL 205 (279) ..-|.+|.+.. -..-.+|.+...-+=.|+-|....|. |+|+.||+|...-+ .+..+.|...+|..- .-|+ T Consensus 10 v~aP~~G~vi~-l~~v~D~vFs~~~~G~G~aI~P~~~~-----v~AP~~G~I~~i~~---t~HAi~i~~~~G~ei-LiHi 79 (154) T 2gpr_A 10 VLAPCDGTIIT-LDEVEDEVFKERMLGDGFAINPKSND-----FHAPVSGKLVTAFP---TKHAFGIQTKSGVEI-LLHI 79 (154) T ss_dssp EECSSSEEEEC-GGGSSCHHHHTTSSCEEEEEEESSSE-----EECSSCEEEEECCT---TCSEEEEECTTSCEE-EEEC T ss_pred EEECCCCEEEE-CCCCCCHHHCCCCCCCEEEEECCCCE-----EECCCCEEEEEECC---CCCEEEEECCCCCEE-EEEE T ss_conf 99647737988-56298737456881052999827997-----98367849999878---996999991999899-9997 Q ss_pred C--C-------C-CCCCCCCEEECCCEEEEEEC Q ss_conf 6--6-------5-52468878606726874306 Q T0608 206 D--S-------Y-AELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~ 228 (279) - . + ..|++||.|++||.|..+=- T Consensus 80 GidTv~L~G~gF~~~vk~Gd~V~~G~~L~~~D~ 112 (154) T 2gpr_A 80 GLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154) T ss_dssp SSSGGGGTTCSEEECCCTTCEECTTCEEEEECH T ss_pred EECCCCCCCCCEEEEECCCCEECCCCEEEEECH T ss_conf 322112589744999828999908999999859 No 7 >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A Probab=96.37 E-value=0.012 Score=39.57 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=64.1 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC Q ss_conf 55777532785678877876687444420470266798888877876786899975238983599998089769997512 Q T0608 126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL 205 (279) Q Consensus 126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL 205 (279) ..-|..|.+.. -..-.+|.+...-+=.|+-|....|+ |+|+.||+|...-+ .+..+-|...+|..- .-|+ T Consensus 15 v~aP~~G~vi~-L~~V~D~vFs~~~mG~G~AI~P~~~~-----v~AP~dG~I~~v~~---T~HAigi~t~~G~ei-LIHi 84 (161) T 1f3z_A 15 IIAPLSGEIVN-IEDVPDVVFAEKIVGDGIAIKPTGNK-----MVAPVDGTIGKIFE---TNHAFSIESDSGVEL-FVHF 84 (161) T ss_dssp EECSSCEEEEE-GGGSSSHHHHTTSSCEEEEEEECSSE-----EECSSSEEEEEECT---TSSEEEEEETTSCEE-EEEC T ss_pred EEECCCCEEEE-CCCCCCHHHHCCCCCCEEEEECCCCE-----EEECCCEEEEEECC---CCCEEEEEECCCCEE-EEEE T ss_conf 99516727988-34198958807882275999836998-----99289979999867---896999993998799-9996 Q ss_pred C--C-------C-CCCCCCCEEECCCEEEEEEC Q ss_conf 6--6-------5-52468878606726874306 Q T0608 206 D--S-------Y-AELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~ 228 (279) - . + ..|++||.|++||.|..+=- T Consensus 85 GiDTV~L~G~gF~~~vk~Gd~V~~G~~L~~~D~ 117 (161) T 1f3z_A 85 GIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161) T ss_dssp SBSGGGGTTTTEEECSCTTCEECTTCEEEEECH T ss_pred CCCHHHCCCCCEEEEECCCCEECCCCEEEEECH T ss_conf 636543289643899738999989999999869 No 8 >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A Probab=96.36 E-value=0.0095 Score=40.58 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=64.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC Q ss_conf 55777532785678877876687444420470266798888877876786899975238983599998089769997512 Q T0608 126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL 205 (279) Q Consensus 126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL 205 (279) ..-|..|.+.. -..-.+|.+..+-+=.|+=|....|+ |+|+.||+|...-. .+..+.|...+|..- .-|+ T Consensus 15 i~aP~~G~vi~-L~~V~D~vFs~k~~G~GvAI~P~~~~-----v~AP~~G~V~~v~~---T~HAigi~t~~G~ev-LiHi 84 (162) T 1ax3_A 15 FVSPITGEIHP-ITDVPDQVFSGKMMGDGFAILPSEGI-----VVSPVRGKILNVFP---TKHAIGLQSDGGREI-LIHF 84 (162) T ss_dssp CCCCCSEEEEE-GGGSSSHHHHTCTTSEEEEEEECSSE-----EEESCCEEEEECCS---SSSEEEEESSSSCEE-EEEC T ss_pred EEECCCCEEEE-CCCCCCHHHCCCCCCCCEEEECCCCE-----EECCCCEEEEEECC---CCCEEEEECCCCCEE-EEEE T ss_conf 99558857988-24097746446780372899908995-----98278949999857---997999991999799-9998 Q ss_pred --CC-------C-CCCCCCCEEECCCEEEEEEC Q ss_conf --66-------5-52468878606726874306 Q T0608 206 --DS-------Y-AELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 206 --~~-------i-~~V~~G~~V~~Ge~IG~vG~ 228 (279) +. + ..|++||.|++||+|..+=- T Consensus 85 GiDTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~ 117 (162) T 1ax3_A 85 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162) T ss_dssp SSSTTTTTTTTEEESCCCCSEECSEEEEEEECH T ss_pred CCCHHCCCCCCEEEEECCCCEECCCCEEEEECH T ss_conf 204300389613899758899978999999869 No 9 >1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B* Probab=96.09 E-value=0.015 Score=38.76 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=48.5 Q ss_pred CCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE--ECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 88778767868999752389835999980897699975--12665524688786067268743065 Q T0608 166 YYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA--HLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 166 ~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~--HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) ...+.|.++|+|.........|..|+|...+|-...|. .-.+ +.|++||.|++||.|-.==|- T Consensus 169 Nnv~~AsaaGtVs~I~~~EKGg~~ItI~teDGe~ve~~IP~Gp~-LiVsEGD~VkAGQpLTnnPNv 233 (249) T 1ci3_M 169 NAVYNASAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPE-LIVSEGEEVAAGAALTNNPNV 233 (249) T ss_dssp SSCCBCSSCEEEEEEEECTTSCEEEEEECTTSCEEEEEECSSSC-BCCCTTCEECTTCBSBCCCCC T ss_pred CCEEECCCCEEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCC-EEECCCCEECCCCCCCCCCCC T ss_conf 86385102569988686588978999989999798996689980-377589998389802359975 No 10 >1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 Probab=95.62 E-value=0.029 Score=36.35 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=48.1 Q ss_pred CEEECCCCEEEEEEE--CCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE---EEECCCCC Q ss_conf 778767868999752--389835999980897699975-126655246887860672687---43065344 Q T0608 168 PVVSMTDGVVTEKGW--LEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG---YMGDSGYG 232 (279) Q Consensus 168 PV~A~~dG~V~~a~~--~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG---~vG~TG~s 232 (279) .+.|..+|+|.+... ....|..|+|...+|-.+.|. .....+.|++||.|++||.|- .||--|.. T Consensus 170 a~~AsvaGtIs~I~~~~~ekG~~~I~I~~~dG~~v~~~IP~G~~LiV~eGD~VkaGqpLTn~Pnvggfgq~ 240 (292) T 1q90_A 170 IYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLTNNPNVGGFGQA 240 (292) T ss_dssp CCBCSSSEEEEEEEECCTTTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBSBCCCCCCEEEEE T ss_pred EEECCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCCCCCCCCCCCC T ss_conf 48367874998820211678858999988999889997489997897689998389803469976775666 No 11 >2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1 Probab=94.87 E-value=0.045 Score=34.77 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=43.9 Q ss_pred CCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC--CCCCCCCCCCEEECCCEEEE Q ss_conf 877876786899975238983599998089769997512--66552468878606726874 Q T0608 167 YPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL--DSYAELEKGDPVKAGDLLGY 225 (279) Q Consensus 167 ~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL--~~i~~V~~G~~V~~Ge~IG~ 225 (279) ..+.|.++|+|.+.... ..|..|+|.-.+|-...|.=- .+ +.|++||.|++||.|=. T Consensus 171 na~~Ae~aGtVs~Iee~-kgg~~IiItt~DGe~v~y~IP~G~~-LiV~EGD~VkaGqpLTd 229 (249) T 2jxm_B 171 NAFSASIAGTIAAIEDN-GFGFDVTIQPEDGDAVVTSILPGPE-LIVAVGDTVEAGQLLTT 229 (249) T ss_dssp SCCBCSSCEEEEEECCS-SSEEEEEEECTTSCCEEEEECSSSC-BCCCTTCEECTTCBSBC T ss_pred CEEECCCCEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCE-EEECCCCEEECCCCCCC T ss_conf 63853156699887877-9967999999999899997289983-68778999828985144 No 12 >2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Probab=91.59 E-value=0.1 Score=31.63 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=40.6 Q ss_pred CCCCCEEECCCCEEEEEEECCC----------CC--EEEEEEEC------------------CCE----------EEEEE Q ss_conf 8888778767868999752389----------83--59999808------------------976----------99975 Q T0608 164 PGYYPVVSMTDGVVTEKGWLEK----------GG--WRIGITAP------------------TGA----------YFYYA 203 (279) Q Consensus 164 ~~~~PV~A~~dG~V~~a~~~~~----------yG--n~ViI~Hg------------------~G~----------~T~Y~ 203 (279) .-..||.|-.+|+|.|.+-..| .| ..|++++. +|- .+.+. T Consensus 83 P~~~pIisE~~G~v~f~Di~egvT~~e~~De~TG~~~~viie~~~~~~~~~~l~P~I~I~d~~g~~~~~~~~~~~~~Y~l 162 (190) T 2auk_A 83 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 162 (190) T ss_dssp SSEEEEECSSCEEEEEESCCBTTTEEEEECTTTCCEEEEECCTTTSCSTTTTCCCEEEEECTTSCBCBCTTSSCBCEEEC T ss_pred CCCCEEEEECCCEEEEEEEEECEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCEEEEC T ss_conf 66417887216658999974031588987247891689985153455555566846999857897277159996189977 Q ss_pred ECCCCCCCCCCCEEECCCEEEEEE Q ss_conf 126655246887860672687430 Q T0608 204 HLDSYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 204 HL~~i~~V~~G~~V~~Ge~IG~vG 227 (279) -...++.|+.||.|++||+||.+= T Consensus 163 P~ga~l~V~dg~~V~~GdvlAkiP 186 (190) T 2auk_A 163 PGKAIVQLEDGVQISSGDTLARIP 186 (190) T ss_dssp CTTCEESSCTTCEECTTCEEEEEE T ss_pred CCCEEEEECCCCEECCCCEEEECC T ss_conf 999699983989983888999885 No 13 >1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B* Probab=91.17 E-value=0.4 Score=26.53 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=46.0 Q ss_pred CCCEEECCCCEEEEEEECCCCCEEEEEE-ECCCE---EEEEEECCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 8877876786899975238983599998-08976---99975126655246887860672687430653 Q T0608 166 YYPVVSMTDGVVTEKGWLEKGGWRIGIT-APTGA---YFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 166 ~~PV~A~~dG~V~~a~~~~~yGn~ViI~-Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) .....|.+.|++.........|..|.|. -.+|- .++=+.+ ++ .|++||.|++||.|-.==|-| T Consensus 168 Nn~~~as~aG~I~~I~~~e~g~~~v~i~~~~~g~~v~e~IP~Gp-~l-iV~~G~~v~a~qpLT~dPNVG 234 (252) T 1hcz_A 168 NTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGL-EL-LVSEGESIKLDQPLTSNPNVG 234 (252) T ss_dssp SSCCBCSSCEEEEEEEECTTSCEEEEEEETTTTEEEEEEECTTC-CB-CCCTTCEECTTCBSBCCCCCC T ss_pred CCEEECCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCC-EE-EECCCCEEECCCCCCCCCCCC T ss_conf 72482567707888676688856999995699967888159998-58-882898884698555699866 No 14 >1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A* Probab=90.49 E-value=0.59 Score=25.12 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=46.4 Q ss_pred CCEEECCCCEEEEEEE--CCCCCEEEEEEECCCE---EEEEEECCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 8778767868999752--3898359999808976---99975126655246887860672687430653 Q T0608 167 YPVVSMTDGVVTEKGW--LEKGGWRIGITAPTGA---YFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 167 ~PV~A~~dG~V~~a~~--~~~yGn~ViI~Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) ....|.+.|+|..... ....|..|.|+..+|- .++-+.. ++ .|++||.|++||.|-.==|-| T Consensus 169 ~~~~as~~G~I~~I~~~~~~~gg~~v~I~~~~G~~v~~~iP~Gp-~l-iV~eG~~v~~~qpLT~nPNVG 235 (251) T 1e2w_A 169 TIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGP-DL-IVKEGQTVQADQPLTNNPNVG 235 (251) T ss_dssp SCCBCSSCEEEEEEEESSSSSCCEEEEEECTTSCEEEEEECSSS-CB-CCCTTCEECTTCBCBCCCCCC T ss_pred CEECCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCC-EE-EECCCCEEECCCCCCCCCCCC T ss_conf 24536676278887752267885799998689989878428998-58-860798785698455699856 No 15 >2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Probab=88.06 E-value=0.6 Score=25.05 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=30.7 Q ss_pred EEECCCCEEEEEEE---CCCCCEEEEEEECCCEEEE----------EE-EC-CCCCCCCCCCEEECCCEEEEE Q ss_conf 78767868999752---3898359999808976999----------75-12-665524688786067268743 Q T0608 169 VVSMTDGVVTEKGW---LEKGGWRIGITAPTGAYFY----------YA-HL-DSYAELEKGDPVKAGDLLGYM 226 (279) Q Consensus 169 V~A~~dG~V~~a~~---~~~yGn~ViI~Hg~G~~T~----------Y~-HL-~~i~~V~~G~~V~~Ge~IG~v 226 (279) |.|-.+|+|.|..- ...-|+.|++. -+|...+ |- -. +. +.|+.||.|++||+|+.- T Consensus 11 i~~k~~G~Vkf~nl~~V~n~~G~~Iv~s-R~g~i~I~d~~G~e~e~y~ipyGa~-L~VkdG~~Vk~G~~laeW 81 (190) T 2auk_A 11 IQVKNKGSIKLSNVKSVVNSSGKLVITS-RNTELKLIDEFGRTKESYKVPYGAV-LAKGDGEQVAGGETVANW 81 (190) T ss_dssp EECCSSEEEEEESCCEEECTTSCEEECC-SSCEEEEECTTSCEEEEEECCTTCE-ESSCTTCEECTTCEEEEC T ss_pred EEECCCEEEEEEEEEEEECCCCCEEEEE-CCCEEEEEECCCCEEEEEECCCCCE-EEECCCCEEEECEEEEEE T ss_conf 8981162999975179998999899993-4508999904883899976587618-998279787602048981 No 16 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Probab=82.00 E-value=2.1 Score=20.29 Aligned_cols=59 Identities=20% Similarity=0.098 Sum_probs=34.6 Q ss_pred CEEECCCCEEEEEEECCC-----CCEEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE Q ss_conf 778767868999752389-----835999980897699975126----655246887860672687430 Q T0608 168 PVVSMTDGVVTEKGWLEK-----GGWRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~-----yGn~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG 227 (279) -|.|+-.|+|....-..| .--..+|+.-.-...+.+-.+ ++ .|+.||.|..||+|..+| T Consensus 10 ~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~ies~K~~~~v~Ap~~G~V~~i-~v~~G~~V~~G~~L~~Ig 77 (77) T 1dcz_A 10 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV-LVKERDAVQGGQGLIKIG 77 (77) T ss_dssp EEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEE-CCCTTCBCCBTSEEEEEC T ss_pred EEECCCCCEEEEEEECCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEE-EECCCCEECCCCEEEEEC T ss_conf 69899781999999379999927973999995154389977899899999-819959979999999949 No 17 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Probab=81.58 E-value=2.2 Score=20.18 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=33.4 Q ss_pred EEECCCCEEEEEEEC-----CCCCEEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE Q ss_conf 787678689997523-----89835999980897699975126----655246887860672687430 Q T0608 169 VVSMTDGVVTEKGWL-----EKGGWRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 169 V~A~~dG~V~~a~~~-----~~yGn~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG 227 (279) |.|+-.|+|...--. ...-..+.|..-.-...+.+..+ ++ .|+.||.|..||+|...| T Consensus 8 v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEs~K~~~~v~ap~~G~v~~i-~v~~G~~V~~G~~L~~Ig 74 (74) T 2d5d_A 8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI-LVKEGEAVDTGQPLIELG 74 (74) T ss_dssp EECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEE-CCCTTCEECTTCEEEEEC T ss_pred EECCCCCEEEEEECCCCCEEECCCEEEEEECCCCCEEEECCCCEEEEEE-EECCCCEECCCCEEEEEC T ss_conf 9789998899999489999969988999984787538863778899899-968989989999999939 No 18 >3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Probab=77.81 E-value=0.89 Score=23.55 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=40.7 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEEC Q ss_conf 7787678689997523--------8983599---99808976999751266552468878606726874306 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~ 228 (279) +|+|..+|.|...+.. -|.|... .|||+-|+. + .++.||+|++||+|..+=. T Consensus 340 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~~~d~id~~~Gi~--------~-~~~~G~~V~~g~~l~~i~~ 402 (436) T 3h5q_A 340 EYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIV--------L-NKKIGDKVEEGESLLTIHS 402 (436) T ss_dssp EEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTSEEEEEEE T ss_pred EEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEEC T ss_conf 8834888799995079999999983999788878888576858--------7-1579598679991899975 No 19 >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Probab=76.99 E-value=1.1 Score=22.81 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=24.7 Q ss_pred CEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEECCC-EEEEEECCC Q ss_conf 778767868999752389835999980897699975126655246887860672-687430653 Q T0608 168 PVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD-LLGYMGDSG 230 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge-~IG~vG~TG 230 (279) .|+|+.||+| .+. .+++|++|..|+ +|..+-+.- T Consensus 69 ~I~AP~~G~V----------------------------~~~-~~~~G~~V~~g~~~l~~I~~~d 103 (116) T 2k32_A 69 EIKAPFDGTI----------------------------GDA-LVNIGDYVSASTTELVRVTNLN 103 (116) T ss_dssp EEECSSSEEE----------------------------CCC-SCCTTCEECTTTSCCEEEECSC T ss_pred EEECCCCEEE----------------------------EEE-ECCCCCEECCCCCEEEEEECCC T ss_conf 9988988799----------------------------989-8799998889995489997798 No 20 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Probab=74.36 E-value=2.1 Score=20.35 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=28.1 Q ss_pred CEEECCCCEEEEEEECCC----CCEEEEEEECCCE-EEEEEEC----CCCCCCCCCCEEECCCEEEE Q ss_conf 778767868999752389----8359999808976-9997512----66552468878606726874 Q T0608 168 PVVSMTDGVVTEKGWLEK----GGWRIGITAPTGA-YFYYAHL----DSYAELEKGDPVKAGDLLGY 225 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~----yGn~ViI~Hg~G~-~T~Y~HL----~~i~~V~~G~~V~~Ge~IG~ 225 (279) +|-|+-.|.|+...-..| -|..++|--.=-+ .++.+-. .++ .|++||.|..||+|-. T Consensus 651 ~v~Apm~G~v~~v~V~~Gd~V~~G~~l~v~EAMKME~~i~ap~~G~V~~i-~v~~g~~V~~gdlL~~ 716 (718) T 3bg3_A 651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKV-HVTKDMTLEGDDLILE 716 (718) T ss_dssp CEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCC-CCCSEEEECSSCEEEC T ss_pred CCCCCCCCEEEEEEECCCCEECCCCEEEEEEHHCCCCCCCCCCCCEEEEE-EECCCCEECCCCEEEE T ss_conf 31489994379999799998799998999852027661048998089799-9789898789988999 No 21 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Probab=74.35 E-value=1.4 Score=21.99 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=9.3 Q ss_pred CCCCCCEEECCCEEEE Q ss_conf 2468878606726874 Q T0608 210 ELEKGDPVKAGDLLGY 225 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~ 225 (279) .|+.||.|..||+|-. T Consensus 63 ~v~~G~~V~~G~~L~~ 78 (80) T 1bdo_A 63 LVESGQPVEFDEPLVV 78 (80) T ss_dssp CSCTTCEECTTCEEEE T ss_pred EECCCCEECCCCEEEE T ss_conf 8489799899999999 No 22 >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Probab=72.79 E-value=1.6 Score=21.39 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=9.7 Q ss_pred CCCCCCEEECCCEEEEE Q ss_conf 24688786067268743 Q T0608 210 ELEKGDPVKAGDLLGYM 226 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~v 226 (279) .|+.||.|++||+||.+ T Consensus 281 ~v~lG~~V~kGq~ig~I 297 (354) T 3cdx_A 281 THYVGEEVRTGETAGWI 297 (354) T ss_dssp SCCTTCEECTTSEEEEE T ss_pred ECCCCCEECCCCEEEEE T ss_conf 16889995899999999 No 23 >3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} Probab=72.63 E-value=2.4 Score=19.87 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=17.0 Q ss_pred CCCCCCEEECCCEEEEEECC Q ss_conf 24688786067268743065 Q T0608 210 ELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~vG~T 229 (279) .++.|+.|++||+||.+-+- T Consensus 304 ~~~~G~~V~~G~~ig~I~d~ 323 (368) T 3fmc_A 304 LGKVGVPMKATDPLVNLLRL 323 (368) T ss_dssp CSCTTCCBCTTCEEEEEECG T ss_pred CCCCCCEECCCCEEEEEECC T ss_conf 88997987799999999667 No 24 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Probab=72.12 E-value=2.4 Score=19.80 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=22.0 Q ss_pred CCCCCCCCCCEEECCCEEEEEECCCCCCC Q ss_conf 66552468878606726874306534467 Q T0608 206 DSYAELEKGDPVKAGDLLGYMGDSGYGEE 234 (279) Q Consensus 206 ~~i~~V~~G~~V~~Ge~IG~vG~TG~st~ 234 (279) .++ .|+.||.|..|++|+.+..++-+.. T Consensus 51 ~~i-~v~~G~~V~~G~~l~~ie~~~~~~~ 78 (85) T 2k7v_A 51 KEL-KVNVGDKVKTGSLIMIFEVEGAAPA 78 (85) T ss_dssp CEE-CSCTTCCBCTTSEEEEEECCSSCCC T ss_pred EEE-EECCCCEECCCCEEEEEECCCCCCC T ss_conf 899-8689799899999999975887788 No 25 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=70.75 E-value=2 Score=20.53 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.1 Q ss_pred CCCCCCCCCCEEECCCEEEEEE Q ss_conf 6655246887860672687430 Q T0608 206 DSYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 206 ~~i~~V~~G~~V~~Ge~IG~vG 227 (279) .++ .+++||.|+.||+|+.+. T Consensus 57 ~~i-~~~~Gd~v~~G~~l~~i~ 77 (80) T 1pmr_A 57 DAV-LEDEGTTVTSRQILGRLR 77 (80) T ss_dssp CBC-TTCTTCEECSSSEEEBCC T ss_pred EEE-EECCCCEECCCCEEEEEE T ss_conf 999-778999988999999997 No 26 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=69.95 E-value=2.1 Score=20.38 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.3 Q ss_pred CCCCCCCCCCEEECCCEEEEEECCCC Q ss_conf 66552468878606726874306534 Q T0608 206 DSYAELEKGDPVKAGDLLGYMGDSGY 231 (279) Q Consensus 206 ~~i~~V~~G~~V~~Ge~IG~vG~TG~ 231 (279) .++ .|++||.|..||+|+.+-.+|- T Consensus 55 ~~i-~v~~G~~v~~G~~l~~ie~~g~ 79 (80) T 1qjo_A 55 KEL-KVNVGDKVKTGSLIMIFEVEGA 79 (80) T ss_dssp EEC-CCCTTCEECTTCCCEEEESCCC T ss_pred EEE-EECCCCEECCCCEEEEEECCCC T ss_conf 999-9589899589999999964658 No 27 >2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} Probab=69.43 E-value=2.1 Score=20.35 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.1 Q ss_pred CCCCCCCEEECCCEEEEEECCC Q ss_conf 5246887860672687430653 Q T0608 209 AELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 209 ~~V~~G~~V~~Ge~IG~vG~TG 230 (279) ..++.||.|++||+||.+-+.+ T Consensus 270 ~~~~~G~~V~~Gq~lg~I~~~~ 291 (332) T 2qj8_A 270 PRCSVMDEVEQGDVVGVLHPMG 291 (332) T ss_dssp ECSCTTCEECTTCEEEEEECTT T ss_pred EECCCCCEECCCCEEEEEECCC T ss_conf 8178899977999899994787 No 28 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Probab=69.42 E-value=2 Score=20.51 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=26.4 Q ss_pred EEEECCCEEEEEEEC----CCCCCCCCCCEEECCCEEEEEECCCC Q ss_conf 998089769997512----66552468878606726874306534 Q T0608 191 GITAPTGAYFYYAHL----DSYAELEKGDPVKAGDLLGYMGDSGY 231 (279) Q Consensus 191 iI~Hg~G~~T~Y~HL----~~i~~V~~G~~V~~Ge~IG~vG~TG~ 231 (279) .|.-..-...+++.. .++ .|++||.|..||+|+.+-..|- T Consensus 37 ~iEt~K~~~~v~a~~~G~v~~i-~v~~G~~v~~G~~l~~i~~~~~ 80 (81) T 1gjx_A 37 TLETDKATMDVPAEVAGVVKEV-KVKVGDKISEGGLIVVVEAEGT 80 (81) T ss_dssp EEECSSCEEEECCCCSSBBCCC-CCCSSCEECSSSCCCEECCSCC T ss_pred EEEECCCEEEEEECCCEEEEEE-ECCCCCEECCCCEEEEEECCCC T ss_conf 9992785899990534399999-8189899789999999934757 No 29 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Probab=69.36 E-value=2 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=15.3 Q ss_pred CCCCCEEECCCEEEEEE Q ss_conf 46887860672687430 Q T0608 211 LEKGDPVKAGDLLGYMG 227 (279) Q Consensus 211 V~~G~~V~~Ge~IG~vG 227 (279) |++|+.|..|++|+.+- T Consensus 57 v~~G~~V~~G~~l~~Ie 73 (84) T 2kcc_A 57 KRPGAVLEAGCVVARLE 73 (84) T ss_dssp SCTTCCCCTTCCCEEEE T ss_pred ECCCCEECCCCEEEEEE T ss_conf 89989989999999993 No 30 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=69.27 E-value=4.2 Score=17.71 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=34.6 Q ss_pred CEEECCCCEEEEEEECCC----CC-EEEEEEECCCEEEEEEECCCCC--CCCCCCEEECCCEEEEEE Q ss_conf 778767868999752389----83-5999980897699975126655--246887860672687430 Q T0608 168 PVVSMTDGVVTEKGWLEK----GG-WRIGITAPTGAYFYYAHLDSYA--ELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~----yG-n~ViI~Hg~G~~T~Y~HL~~i~--~V~~G~~V~~Ge~IG~vG 227 (279) -|.|+..|+|+...-..| -| -+++|.-..-...+++-.+-++ .|++||.|+.||+|+.+= T Consensus 19 ~v~sp~~G~i~~~~V~~Gd~V~~G~~i~~iE~~K~~~~V~a~~~G~V~~~v~~Gd~V~~G~~l~~ie 85 (100) T 2dn8_A 19 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLE 85 (100) T ss_dssp EEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEEECSCTTCEECSSCEEEEEC T ss_pred EEECCCCEEEEEEEECCCCEEECCCEEEEEECCCCCCEEECCCCEEEEEEEEECCEECCCCEEEEEE T ss_conf 8878998499999947999990595499998276462486473849999975175386999999997 No 31 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Probab=67.87 E-value=2.8 Score=19.32 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=24.7 Q ss_pred EEECCCEEEEEEEC----CCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 98089769997512----6655246887860672687430653 Q T0608 192 ITAPTGAYFYYAHL----DSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 192 I~Hg~G~~T~Y~HL----~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) |.-..-...+.+.. .++ .+++||.|..||+|+.+...| T Consensus 38 iEt~K~~~~i~a~~~G~v~~i-~v~~G~~v~~G~~l~~i~~~G 79 (79) T 1ghj_A 38 IETDKVVMEVLAEADGVIAEI-VKNEGDTVLSGELLGKLTEGG 79 (79) T ss_dssp EECSSCEEEEECSSCEEEEEE-SSCTTCEECTTCEEEEECCCC T ss_pred EECCCCEEEEECCCCEEEEEE-EECCCCEECCCCEEEEEECCC T ss_conf 994640899974788999999-918999988999999996899 No 32 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=67.41 E-value=2.5 Score=19.75 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=7.2 Q ss_pred CCCCCEEECCCEEEE Q ss_conf 468878606726874 Q T0608 211 LEKGDPVKAGDLLGY 225 (279) Q Consensus 211 V~~G~~V~~Ge~IG~ 225 (279) |++||.|.+||.|.. T Consensus 1130 v~~G~~V~aGq~Lvv 1144 (1150) T 3hbl_A 1130 VNNGDTIATGDLLIE 1144 (1150) T ss_dssp CCTTCEECTTBEEEE T ss_pred ECCCCEECCCCEEEE T ss_conf 189598789997999 No 33 >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Probab=66.82 E-value=2.8 Score=19.23 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=19.4 Q ss_pred CCCCCCCCCC-EEECCCEEEEEECCCC Q ss_conf 6655246887-8606726874306534 Q T0608 206 DSYAELEKGD-PVKAGDLLGYMGDSGY 231 (279) Q Consensus 206 ~~i~~V~~G~-~V~~Ge~IG~vG~TG~ 231 (279) .++ .|++|+ .|.-|++|+.+..++- T Consensus 62 ~~i-lv~eGd~~v~vG~~ia~i~~~~e 87 (108) T 2dne_A 62 AKI-LVAEGTRDVPIGAIICITVGKPE 87 (108) T ss_dssp EEC-SSCTTCCSEETTCEEEEEESCHH T ss_pred EEE-EECCCCEEECCCCEEEEECCCCC T ss_conf 788-86549818769998999905866 No 34 >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=66.65 E-value=4.7 Score=17.31 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=27.8 Q ss_pred EEEEEECCCEEEEEEE----CCCCCCCCCCC-EEECCCEEEEEECCCCCC Q ss_conf 9999808976999751----26655246887-860672687430653446 Q T0608 189 RIGITAPTGAYFYYAH----LDSYAELEKGD-PVKAGDLLGYMGDSGYGE 233 (279) Q Consensus 189 ~ViI~Hg~G~~T~Y~H----L~~i~~V~~G~-~V~~Ge~IG~vG~TG~st 233 (279) .+.|....-..-+.+. |.++ .|++|+ .|..|++|+.+...|-.. T Consensus 41 l~~vEtdK~~~ei~a~~~G~l~~i-~v~eG~~~v~vG~~i~~i~~~~e~~ 89 (98) T 2dnc_A 41 LCEIETDKAVVTLDASDDGILAKI-VVEEGSKNIRLGSLIGLIVEEGEDW 89 (98) T ss_dssp EEEEECSSCEEEEECSSCEEEEEC-SSCTTCCCEESSCEEEEEECTTSCS T ss_pred EEEEECCCEEEEEECCCCEEEEEE-EEEECCCEECCCCEEEEEECCCCCC T ss_conf 999983837899975854099999-9962984883899899991488764 No 35 >1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Probab=66.24 E-value=2.7 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.0 Q ss_pred EECCCCCCCCCCC-EEECCCEEEEEECCCCC Q ss_conf 5126655246887-86067268743065344 Q T0608 203 AHLDSYAELEKGD-PVKAGDLLGYMGDSGYG 232 (279) Q Consensus 203 ~HL~~i~~V~~G~-~V~~Ge~IG~vG~TG~s 232 (279) |-+.++ .|++|| .|+-|++|+.+...+-. T Consensus 79 G~i~~i-lv~eGd~~v~vG~~Ia~I~~~~~~ 108 (128) T 1y8o_B 79 GYLAKI-LVPEGTRDVPLGTPLCIIVEKEAD 108 (128) T ss_dssp EEEEEE-SSCTTCCSEETTCEEEEEESSGGG T ss_pred CCEEEE-EECCCCEEECCCCEEEEEECCCCC T ss_conf 217698-966798687389989999357666 No 36 >3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Probab=64.82 E-value=3.1 Score=18.87 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.0 Q ss_pred ECCCCCCCCCCC-EEECCCEEEEEECCC Q ss_conf 126655246887-860672687430653 Q T0608 204 HLDSYAELEKGD-PVKAGDLLGYMGDSG 230 (279) Q Consensus 204 HL~~i~~V~~G~-~V~~Ge~IG~vG~TG 230 (279) .|.++ .|.+|+ .|.-|++||.+..+| T Consensus 58 ~l~~i-~v~eGd~~v~vG~~ia~i~~~~ 84 (87) T 3crk_C 58 YLAKI-LVPEGTRDVPLGTPLCIIVEKE 84 (87) T ss_dssp EEEEE-SSCTTCCCEETTCEEEEEESSS T ss_pred EEEEE-EECCCCEEECCCCEEEEEECCC T ss_conf 99999-9668984876999899995667 No 37 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Probab=63.35 E-value=5 Score=17.07 Aligned_cols=26 Identities=12% Similarity=0.044 Sum_probs=20.7 Q ss_pred CCCCCCCCCEEECCCEEEEEECCCCCC Q ss_conf 655246887860672687430653446 Q T0608 207 SYAELEKGDPVKAGDLLGYMGDSGYGE 233 (279) Q Consensus 207 ~i~~V~~G~~V~~Ge~IG~vG~TG~st 233 (279) ++ .+++||.|..|++|+..-..+-+. T Consensus 60 ~i-~v~~Gd~V~~G~~l~~ie~e~~~d 85 (93) T 1k8m_A 60 KL-YYNLDDIAYVGKPLVDIETEALKD 85 (93) T ss_dssp EE-CCCSSCEECTTSEEEEEECSCCTT T ss_pred EE-EECCCCEECCCCEEEEEECCCCCC T ss_conf 99-819999978999999997678754 No 38 >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Probab=63.22 E-value=5.4 Score=16.82 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=38.5 Q ss_pred EEECCCCEEEEEEEC-----CCCCEEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEEC Q ss_conf 787678689997523-----89835999980897699975126----6552468878606726874306 Q T0608 169 VVSMTDGVVTEKGWL-----EKGGWRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 169 V~A~~dG~V~~a~~~-----~~yGn~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG~ 228 (279) +.|+..|+|+..--. ...-.++.|....-...+++..+ ++ .|++||.|+.||+|..+-. T Consensus 17 ~~APm~G~v~~~~V~~Gd~V~~G~~l~~vEt~K~~~ei~ap~~G~v~~i-~v~~Gd~V~~G~~L~~i~~ 84 (99) T 2ejm_A 17 PLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKV-FYREGAQANRHTPLVEFEE 84 (99) T ss_dssp CBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEE-SCCTTEEECTTCBCEEECC T ss_pred EECCCCEEEEEEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEE-EECCCCEECCCCEEEEEEC T ss_conf 0388996999997689899879998999974765558992866879599-6189899789998999965 No 39 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} Probab=63.16 E-value=1.7 Score=21.06 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=9.3 Q ss_pred CCCCCCEEECCCEEEE Q ss_conf 2468878606726874 Q T0608 210 ELEKGDPVKAGDLLGY 225 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~ 225 (279) .|++||.|..||+|+. T Consensus 77 ~v~~G~~V~~G~~L~~ 92 (94) T 2jku_A 77 HCQAGDTVGEGDLLVE 92 (94) T ss_dssp ---------------- T ss_pred EECCCCEECCCCEEEE T ss_conf 9589899799999999 No 40 >2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} Probab=61.11 E-value=5.8 Score=16.54 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=22.2 Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCC Q ss_conf 786899975238983599998089769997512665 Q T0608 173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY 208 (279) Q Consensus 173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i 208 (279) -.|+|..=....|||- |..+ +| .-+|-|.+.+ T Consensus 3 ~~G~Vk~f~~~KGfGF-I~~~--~G-~dvF~H~s~l 34 (74) T 2k5n_A 3 MNGTITTWFKDKGFGF-IKDE--NG-DNRYFHVIKV 34 (74) T ss_dssp EEEEEEEEETTTTEEE-EEES--SS-CEEEEEGGGB T ss_pred CCEEEEEEECCCCCCE-EEEC--CC-CCEEEEEEEE T ss_conf 5449999979899138-9606--89-8699998710 No 41 >1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C* Probab=56.74 E-value=0.6 Score=25.00 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=48.8 Q ss_pred CCEEECCCCEEEEEEECC----CCCEEEEEEECCCE---EEEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCC Q ss_conf 877876786899975238----98359999808976---99975126655246887860672687430653446777788 Q T0608 167 YPVVSMTDGVVTEKGWLE----KGGWRIGITAPTGA---YFYYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGE 239 (279) Q Consensus 167 ~PV~A~~dG~V~~a~~~~----~yGn~ViI~Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~ 239 (279) ....|.+.|+|....... +.|..|.|...+|- .++-+.. ++ .|++||.|++||.|-.==|-|-.- T Consensus 170 ~~~~as~~G~I~~I~~~e~g~~~~~~~v~I~~~~G~~v~~~iP~Gp-~l-iV~~G~~v~~~qpLT~nPNVGGFG------ 241 (289) T 1vf5_C 170 NVFTASATGTITKIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGP-EL-IVSEGQAVKAGEALTNNPNVGGFG------ 241 (289) T ss_dssp SCCCCSSSSCCCBCCCCCCCSSCCCCCCBCCCCSSSCCCCCCCSSS-CC-CCCTTCCCTTSCCCSCCCCCCCBE------ T ss_pred CEEECCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCC-EE-EEECCCEEECCCCCCCCCCCCCCC------ T ss_conf 4660567737888764467787753699997799988777428997-58-870798785698665799866667------ Q ss_pred CCCCEEEEEEEC Q ss_conf 897225899981 Q T0608 240 FPVHLHLGIYLK 251 (279) Q Consensus 240 ~g~HLHfei~~~ 251 (279) ..--||-++ T Consensus 242 ---Q~d~EIVLQ 250 (289) T 1vf5_C 242 ---QDDTEIVLQ 250 (289) T ss_dssp ---EEEEEEEEC T ss_pred ---CCCEEEEEC T ss_conf ---661489941 No 42 >2zbv_A Uncharacterized conserved protein; NPPSFA, national project on protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima MSB8} PDB: 2zbu_A* Probab=56.23 E-value=6.5 Score=16.08 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=18.5 Q ss_pred EEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 86067268743065344677778889722589998178 Q T0608 216 PVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEG 253 (279) Q Consensus 216 ~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~ 253 (279) .|..|+.+.+.||+|+ +||=++.. T Consensus 222 ~v~~G~~~~~~~S~G~--------------lEiain~G 245 (263) T 2zbv_A 222 DVDTGELLVHPDSAGF--------------LEIAVNLG 245 (263) T ss_dssp GSCTTCEEEEECTTSE--------------EEEEETTS T ss_pred CCCCCCEEEEECCCCC--------------EEEEEECC T ss_conf 6799988999889991--------------99998573 No 43 >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Probab=55.35 E-value=7 Score=15.81 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=17.5 Q ss_pred CCCCCCCCCEEECCCEEEEEECC Q ss_conf 65524688786067268743065 Q T0608 207 SYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 207 ~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) ++ .|++||.|+.||+|+.+-.. T Consensus 49 ~i-~v~~Gd~V~~G~~l~~i~~~ 70 (72) T 1z6h_A 49 EV-KKKEGDFVNEGDVLLELSNS 70 (72) T ss_dssp EE-SSCTTCEECTTCEEEEEGGG T ss_pred EE-EECCCCEECCCCEEEEEECC T ss_conf 99-73898998999999999689 No 44 >1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Probab=55.14 E-value=5.3 Score=16.90 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=37.2 Q ss_pred CEEECCCCEEEEEEECC--------CCCE-EEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 77876786899975238--------9835-999980897699975126655246887860672687430653 Q T0608 168 PVVSMTDGVVTEKGWLE--------KGGW-RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~--------~yGn-~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) +|+|..+|.|...+-.. |.|. .=.|||+-|+. + .++.||+|++||+|..+=... T Consensus 374 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~d~iD~~vGi~--------~-~~k~Gd~V~~g~pl~~i~~~~ 436 (474) T 1uou_A 374 ELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAE--------L-LVDVGQRLRRGTPWLRVHRDG 436 (474) T ss_dssp EEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEE--------E-CSCTTCEECTTCEEEEEEESS T ss_pred EEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEECCC T ss_conf 99738986999954699999999858883889758366868--------6-146879856999389996698 No 45 >2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica cnb-440} PDB: 2q6i_A* 2q6o_A* 2q6l_A* Probab=53.62 E-value=7.4 Score=15.60 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=14.8 Q ss_pred CCCEEECCCEEEEEECCCC Q ss_conf 8878606726874306534 Q T0608 213 KGDPVKAGDLLGYMGDSGY 231 (279) Q Consensus 213 ~G~~V~~Ge~IG~vG~TG~ 231 (279) .=..|..|+.+++.||+|+ T Consensus 227 ty~dv~~Ge~lal~nS~G~ 245 (283) T 2q6k_A 227 TFGEVDEGQPLLYLNSRGR 245 (283) T ss_dssp SGGGSCTTCEEEEECTTSE T ss_pred CCCCCCCCCEEEEECCCCC T ss_conf 2245799988999989996 No 46 >1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Probab=52.99 E-value=6 Score=16.42 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=40.2 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 7787678689997523--------8983599---998089769997512665524688786067268743065 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) +|+|..+|.|...+.. -|.|... .|||+-|+. + .++.||+|++||+|..+=.+ T Consensus 337 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~~~d~iD~~~Gi~--------~-~~k~G~~V~~g~~l~~i~~~ 400 (433) T 1brw_A 337 TVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIV--------L-HKKIGDRVQKGEALATIHSN 400 (433) T ss_dssp EEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTCEEEEEEES T ss_pred EEECCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEECC T ss_conf 9963798799885499999999980899787778889677768--------8-52685996799918999758 No 47 >2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8} Probab=52.11 E-value=6.3 Score=16.23 Aligned_cols=53 Identities=28% Similarity=0.401 Sum_probs=37.4 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 7787678689997523--------8983599---998089769997512665524688786067268743065 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) +|+|..+|.|...+-. -|.|... .|||+-|+. + .++.||+|++||+|..+=+. T Consensus 329 ~i~a~~~G~i~~id~~~ig~~~~~LG~GR~~~~d~id~~vGi~--------~-~~k~G~~V~~g~~l~~i~~~ 392 (423) T 2dsj_A 329 PLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVY--------L-LKKPGDRVERGEALALVYHR 392 (423) T ss_dssp EEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTSEEEEEEEC T ss_pred EEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEE--------E-EECCCCEECCCCEEEEEECC T ss_conf 7733778678653079999999996212304899888577869--------8-61586986799918999669 No 48 >2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Probab=48.27 E-value=6.1 Score=16.33 Aligned_cols=53 Identities=26% Similarity=0.237 Sum_probs=39.7 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 7787678689997523--------8983599---998089769997512665524688786067268743065 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) +|+|..+|.|...+.. -|.|... .|||+=|+. + .++.||+|++||+|..+=.+ T Consensus 342 ~i~a~~~G~i~~id~~~ig~~~~~lGaGR~~~~d~id~~vGi~--------~-~~k~Gd~V~~g~~l~~i~~~ 405 (440) T 2tpt_A 342 AVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFT--------D-MARLGDQVDGQRPLAVIHAK 405 (440) T ss_dssp EECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEE--------S-CCCTTCEEBTTBCSEEEEES T ss_pred EEEECCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEECC T ss_conf 9971698689885289999999982898577888878577868--------7-42686986799908999749 No 49 >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Probab=47.57 E-value=5.6 Score=16.70 Aligned_cols=17 Identities=35% Similarity=0.903 Sum_probs=14.0 Q ss_pred EEECCCEEEEEECCCCC Q ss_conf 86067268743065344 Q T0608 216 PVKAGDLLGYMGDSGYG 232 (279) Q Consensus 216 ~V~~Ge~IG~vG~TG~s 232 (279) .|++||++|.+|-.|.. T Consensus 308 ~v~~Ge~~~iiG~nGaG 324 (538) T 1yqt_A 308 EIKKGEVIGIVGPNGIG 324 (538) T ss_dssp EEETTCEEEEECCTTSS T ss_pred EECCCCEEEEECCCCCC T ss_conf 77279789995257863 No 50 >1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} Probab=46.58 E-value=3.2 Score=18.78 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=5.7 Q ss_pred CCCEEECCCCCC Q ss_conf 420470266798 Q T0608 152 HEGTDIMAEKNT 163 (279) Q Consensus 152 H~GiDiaa~~GT 163 (279) -.|||+..-.|| T Consensus 141 E~gIdl~~I~GT 152 (229) T 1zy8_K 141 KHSLDASQGTAT 152 (229) T ss_dssp HTTCCSSSSCCC T ss_pred HCCCCHHHCCCC T ss_conf 839777571121 No 51 >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Probab=46.54 E-value=8.2 Score=15.22 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=5.0 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |+-..+|+|+..| T Consensus 213 Iivl~~G~Iv~~G 225 (247) T 2ff7_A 213 IIVMEKGKIVEQG 225 (247) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999998 No 52 >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Probab=46.30 E-value=8.3 Score=15.20 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=6.3 Q ss_pred CCCCCCCCCCCEEECC Q ss_conf 2665524688786067 Q T0608 205 LDSYAELEKGDPVKAG 220 (279) Q Consensus 205 L~~i~~V~~G~~V~~G 220 (279) +++++-.+.|..|..| T Consensus 195 aD~Iivl~~G~Iv~~G 210 (237) T 2cbz_A 195 VDVIIVMSGGKISEMG 210 (237) T ss_dssp SSEEEEEETTEEEEEE T ss_pred CCEEEEEECCEEEEEC T ss_conf 9999999899999986 No 53 >2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Probab=45.68 E-value=8.6 Score=15.05 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=4.1 Q ss_pred EEECCCCEEEEE Q ss_conf 787678689997 Q T0608 169 VVSMTDGVVTEK 180 (279) Q Consensus 169 V~A~~dG~V~~a 180 (279) |.-..+|+|++. T Consensus 199 iivl~~G~i~~~ 210 (229) T 2pze_A 199 ILILHEGSSYFY 210 (229) T ss_dssp EEEEETTEEEEE T ss_pred EEEEECCEEEEE T ss_conf 999989999999 No 54 >1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5 Probab=45.14 E-value=9.7 Score=14.60 Aligned_cols=32 Identities=16% Similarity=-0.034 Sum_probs=20.5 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCC Q ss_conf 86899975238983599998089769997512665 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY 208 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i 208 (279) -|+|..=....||| +| ...++-.-++-|.+.+ T Consensus 10 ~G~VKwfn~~KGfG-FI--~~~d~~~DvFvH~s~i 41 (79) T 1h95_A 10 LGTVKWFNVRNGYG-FI--NRNDTKEDVFVHQTAI 41 (79) T ss_dssp EEEEEEEETTTTEE-EE--EEGGGTEEEEEEGGGB T ss_pred EEEEEEEECCCCEE-EE--EECCCCCCEEEEHHHH T ss_conf 08999997999989-99--8689986799984993 No 55 >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A* Probab=44.73 E-value=9.1 Score=14.83 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=12.1 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCCEEECC Q ss_conf 599998089769997512665524688786067 Q T0608 188 WRIGITAPTGAYFYYAHLDSYAELEKGDPVKAG 220 (279) Q Consensus 188 n~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~G 220 (279) -+|+|.|.... ..|..+++++-...|+.|..| T Consensus 195 ~~iiish~~~~-~~~~~aDri~vm~~G~Iv~~G 226 (250) T 2d2e_A 195 GALVITHYQRI-LNYIQPDKVHVMMDGRVVATG 226 (250) T ss_dssp EEEEECSSSGG-GGTSCCSEEEEEETTEEEEEE T ss_pred CEEEEEECHHH-HHHHHCCEEEEEECCEEEEEC T ss_conf 79999814788-999849999999899799992 No 56 >3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58} Probab=44.70 E-value=9.9 Score=14.55 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=28.4 Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC-CEEECCCEEEE Q ss_conf 786899975238983599998089769997512665524688-78606726874 Q T0608 173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG-DPVKAGDLLGY 225 (279) Q Consensus 173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G-~~V~~Ge~IG~ 225 (279) +.|+|..=....||| +|..+. |=.-+|-|.+.+ . ..| ..+..||.|-+ T Consensus 2 ~~G~Vkwf~~~kGyG-FI~~d~--~~~dvFvH~s~l-~-~~g~~~l~~G~~V~f 50 (67) T 3cam_A 2 ATGIVKWFNDAKGFG-FITPDE--GGEDLFAHFSAI-N-MEGFKTLKEGQRVSF 50 (67) T ss_dssp EEEEEEEEETTTTEE-EEEETT--SCCCEEEEGGGB-C-GGGGSSCCTTCEEEE T ss_pred CCEEEEEEECCCCCE-EEEECC--CCCEEEEEEHHC-C-CCCCCCCCCCCEEEE T ss_conf 981999997999958-998789--982899980560-5-226984899999999 No 57 >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Probab=44.58 E-value=9.9 Score=14.53 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=35.3 Q ss_pred CCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE Q ss_conf 8778767868999752389835999980897699975-126655246887860672687 Q T0608 167 YPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG 224 (279) Q Consensus 167 ~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG 224 (279) .||.+-.+|+|.+... .....|+++.. ++...|. ...+.+.|+.||.|++||.|. T Consensus 1271 ~~iis~~~g~v~i~~~--~~~~~i~i~~~-~~~~~~~ip~~~~l~v~~gd~v~~g~~l~ 1326 (1524) T 2a6h_D 1271 KAVISEIDGVVRIEET--EEKLSVFVESE-GFSKEYKLPKEARLLVKDGDYVEAGQPLT 1326 (1524) T ss_dssp BCCBCSSCEEEEECCC--SSCEEEEEECS-SCEEEEEECTTCCCCCCTTSEECTTCBSS T ss_pred CCEEEEECCEEEEEEC--CCEEEEEECCC-CCEEEEECCCCCEEEEECCCEEECCCEEC T ss_conf 8648860666999853--77069998369-80799984899868984899995688721 No 58 >1v8q_A TT0826; structural genomics, proteomics, riken structural genomics/proteomics initiative, RSGI, translation; 2.80A {Thermus thermophilus} SCOP: b.84.4.1 PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 3fin_0 3hux_0 3huz_0 ... Probab=44.37 E-value=9.4 Score=14.71 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=18.9 Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 4444204702667988888778767868999752 Q T0608 149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) .++|.|.-...-...+ ++|..+|+|.|... T Consensus 43 tk~hPG~nVg~GkD~T----LfAl~~G~V~F~~~ 72 (85) T 1v8q_A 43 TRFKPGKNVGMGRDFT----LFALVDGVVEFQDR 72 (85) T ss_dssp CSSEECTTEEECTTCC----EEESSSEEEEEEEC T ss_pred CEEECCCCEEECCCCC----EEEECCEEEEEEEC T ss_conf 7183888851568882----88840579998594 No 59 >2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_O Probab=42.97 E-value=8.7 Score=15.02 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=15.4 Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCEEEE Q ss_conf 4444204702667988888778767868999 Q T0608 149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTE 179 (279) Q Consensus 149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~ 179 (279) .++|.|.-...-... -++|..+|+|.| T Consensus 43 tk~hpG~nVg~GkD~----TlfA~~~G~V~F 69 (69) T 2ftc_O 43 FRWHPGAHVGVGKNK----CLYALEEGIVRY 69 (69) T ss_pred CCEECCCCCCCCCCC----CEEECCCEEEEC T ss_conf 808088984198878----658623338859 No 60 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=42.83 E-value=10 Score=14.33 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=32.6 Q ss_pred CEEECCCCEEEEEEECCC----CCEEEEEEEC-CCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE Q ss_conf 778767868999752389----8359999808-97699975126----655246887860672687430 Q T0608 168 PVVSMTDGVVTEKGWLEK----GGWRIGITAP-TGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~----yGn~ViI~Hg-~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG 227 (279) +|.|+-.|.|-...-..| -|..|.|=-. .=-..+.+-.+ ++ .|++||.|.+||.|..+| T Consensus 1097 ~V~Ap~~GnVWKV~V~~GD~VkaGd~L~IlEAMKMEi~V~AP~~G~V~~I-~v~~Gd~V~aGq~LvVIg 1164 (1165) T 2qf7_A 1097 HVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV-LVKAGDQIDAKDLLAVYG 1164 (1165) T ss_dssp EEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEE-CCCSSCEECTTBEEEEC- T ss_pred EECCCCCEEEEEEEECCCCEECCCCEEEEEEHHHCCCCCCCCCCEEEEEE-EECCCCEECCCCEEEEEC T ss_conf 77689995899999799999799998999865208672428999399789-828969888999899947 No 61 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Probab=42.21 E-value=11 Score=14.26 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=24.8 Q ss_pred EEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEECCC Q ss_conf 9980897699975126----655246887860672687430653 Q T0608 191 GITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 191 iI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) .|.-..-...+.+..+ ++ .|++||.|..||+|+.+-.++ T Consensus 34 ~iE~~K~~~~i~a~~~G~v~~i-~v~~Gd~V~~G~~l~~ie~~~ 76 (79) T 1iyu_A 34 VLESAKASMEVPSPKAGVVKSV-SVKLGDKLKEGDAIIELEPAA 76 (79) T ss_dssp EEECSSCEEEEECSSSSEEEEE-SCCTTCEEETTSEEEEEECCC T ss_pred EEEECCCCEEEECCCCEEEEEE-EECCCCEECCCCEEEEEECCC T ss_conf 9990773148988999999999-358969989999999994676 No 62 >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Probab=40.32 E-value=11 Score=14.05 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=12.5 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCEEECCC Q ss_conf 999980897699975126655246887860672 Q T0608 189 RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD 221 (279) Q Consensus 189 ~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge 221 (279) +|+|.|.-... ..+++++-++.|..|..|. T Consensus 210 vI~itH~l~~~---~~aD~Iivl~~G~Iv~~Gt 239 (271) T 2ixe_A 210 VLLITQQLSLA---ERAHHILFLKEGSVCEQGT 239 (271) T ss_dssp EEEECSCHHHH---TTCSEEEEEETTEEEEEEC T ss_pred EEEECCCHHHH---HHCCEEEEEECCEEEEECC T ss_conf 99986889999---8599999998999999889 No 63 >1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A* Probab=40.30 E-value=11 Score=14.04 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.0 Q ss_pred CEEECCCCEEEEEEECCCC Q ss_conf 7787678689997523898 Q T0608 168 PVVSMTDGVVTEKGWLEKG 186 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~y 186 (279) -|....+|.|+..+....+ T Consensus 214 rv~~m~~G~iv~~g~~~~~ 232 (235) T 1l2t_A 214 RIIYLKDGEVEREEKLRGF 232 (235) T ss_dssp EEEEEETTEEEEEEECC-- T ss_pred EEEEEECCEEEEECCCCCC T ss_conf 8999979999997762145 No 64 >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Probab=39.58 E-value=12 Score=13.95 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=7.2 Q ss_pred ECCCCCCCCCCCEEECC Q ss_conf 12665524688786067 Q T0608 204 HLDSYAELEKGDPVKAG 220 (279) Q Consensus 204 HL~~i~~V~~G~~V~~G 220 (279) ++++++-.+.|..|..| T Consensus 224 ~~Dri~vl~~G~i~~~G 240 (290) T 2bbs_A 224 KADKILILHEGSSYFYG 240 (290) T ss_dssp HSSEEEEEETTEEEEEE T ss_pred HCCEEEEEECCEEEEEC T ss_conf 59999999899999985 No 65 >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Probab=39.51 E-value=12 Score=13.94 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=4.8 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |+-..+|+|+..| T Consensus 223 Iivl~~G~iv~~G 235 (260) T 2ghi_A 223 IILLNKGKIVEKG 235 (260) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999988 No 66 >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Probab=39.15 E-value=12 Score=13.90 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=17.5 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCCEEECCC Q ss_conf 5999980897699975126655246887860672 Q T0608 188 WRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD 221 (279) Q Consensus 188 n~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge 221 (279) .+|+|.|.-... .++++++-.+.|..|..|. T Consensus 190 Tvi~itH~l~~~---~~~D~i~vl~~G~iv~~G~ 220 (243) T 1mv5_A 190 TTLVIAHRLSTI---VDADKIYFIEKGQITGSGK 220 (243) T ss_dssp EEEEECCSHHHH---HHCSEEEEEETTEECCCSC T ss_pred EEEEEECCHHHH---HHCCEEEEEECCEEEEECC T ss_conf 899996889999---8599999998999999889 No 67 >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Probab=38.60 E-value=12 Score=13.84 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=5.1 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+|+..| T Consensus 223 i~vm~~G~iv~~G 235 (262) T 1b0u_A 223 VIFLHQGKIEEEG 235 (262) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999799999986 No 68 >2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein, mehtanococcus jannaschii, structural genomics, PSI; 2.50A {Methanocaldococcus jannaschii} Probab=37.48 E-value=12 Score=13.71 Aligned_cols=13 Identities=8% Similarity=0.521 Sum_probs=11.4 Q ss_pred CCCEEEEEECCCC Q ss_conf 6726874306534 Q T0608 219 AGDLLGYMGDSGY 231 (279) Q Consensus 219 ~Ge~IG~vG~TG~ 231 (279) .|+.+++.||+|+ T Consensus 227 ~G~~lal~nS~G~ 239 (273) T 2f4n_A 227 KNNFICLINSEGF 239 (273) T ss_dssp TTSCEEEECTTSC T ss_pred CCCEEEEECCCCC T ss_conf 9988999879992 No 69 >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* Probab=37.42 E-value=12 Score=13.70 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=9.1 Q ss_pred EEECCCCEEEEEEE Q ss_conf 78767868999752 Q T0608 169 VVSMTDGVVTEKGW 182 (279) Q Consensus 169 V~A~~dG~V~~a~~ 182 (279) |....+|+++..|. T Consensus 203 i~vl~~G~ii~~g~ 216 (249) T 2qi9_C 203 AWLLKGGKMLASGR 216 (249) T ss_dssp EEEEETTEEEEEEE T ss_pred EEEEECCEEEEECC T ss_conf 99998998999878 No 70 >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} Probab=37.35 E-value=12 Score=13.69 Aligned_cols=17 Identities=29% Similarity=0.894 Sum_probs=14.6 Q ss_pred EEECCCEEEEEECCCCC Q ss_conf 86067268743065344 Q T0608 216 PVKAGDLLGYMGDSGYG 232 (279) Q Consensus 216 ~V~~Ge~IG~vG~TG~s 232 (279) .|.+||++|.+|-.|.. T Consensus 378 ~i~~GEiv~i~G~NGaG 394 (607) T 3bk7_A 378 EIRKGEVIGIVGPNGIG 394 (607) T ss_dssp EEETTCEEEEECCTTSS T ss_pred CCCCCEEEEEECCCCCC T ss_conf 66765189998789998 No 71 >1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A, isocitrate lyase, persistence, GLCB, structural genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.13.1 PDB: 1n8w_A* 2gq3_A* Probab=36.60 E-value=13 Score=13.60 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=29.3 Q ss_pred ECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEE Q ss_conf 067268743065344677778889722589998178886321708999886228767731 Q T0608 218 KAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVY 277 (279) Q Consensus 218 ~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~~~~~~~~ 277 (279) ...|.+||.|+.-..++--=. --.||+||.+ ||...+-..+++-|+|+. T Consensus 213 ~~~qf~G~~g~~~~p~~ill~--~n~LHiei~i---------d~~~~iG~~d~agi~Di~ 261 (741) T 1n8i_A 213 NPGQFAGYTGAAESPTSVLLI--NHGLHIEILI---------DPESQVGTTDRAGVKDVI 261 (741) T ss_dssp SGGGEEEEEEETTEEEEEEEE--ETTEEEEEEE---------CTTSTTGGGSTTCEEEEE T ss_pred CHHHEEEECCCCCCCHHHHHH--HCCCEEEEEE---------CCCCCCCCCCCCCCHHHH T ss_conf 755757654888881667998--6884699998---------888754557801023664 No 72 >2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} Probab=36.40 E-value=13 Score=13.58 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=27.2 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCC--EEECCCEEEE Q ss_conf 868999752389835999980897699975126655246887--8606726874 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGD--PVKAGDLLGY 225 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~--~V~~Ge~IG~ 225 (279) .|+|..=....|||- |.- .+| .-+|-|.+.+. ..|. .+..||.+-+ T Consensus 2 ~G~Vk~f~~~KGfGF-I~~--d~g-~DvFvH~s~i~--~~~~~~~L~~G~~V~F 49 (74) T 2kcm_A 2 KGKVVSYLAAKKYGF-IQG--DDG-ESYFLHFSELL--DKKDEGKLVKGSMVHF 49 (74) T ss_dssp EEEEEEEETTTTEEE-EEE--TTS-CEECCCGGGSS--CSGGGTTCCTTSEEEE T ss_pred EEEEEEEECCCCEEE-EEC--CCC-CEEEEEHHHHC--CCCCCCCCCCCCEEEE T ss_conf 389999989998667-836--999-67999947703--4788545799999999 No 73 >2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} Probab=35.55 E-value=13 Score=13.48 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=5.2 Q ss_pred CCCCCCCCCCEEECC Q ss_conf 665524688786067 Q T0608 206 DSYAELEKGDPVKAG 220 (279) Q Consensus 206 ~~i~~V~~G~~V~~G 220 (279) ++++-.+.|+.|..| T Consensus 206 drv~vl~~G~iv~~G 220 (266) T 2yz2_A 206 DRVVVLEKGKKVFDG 220 (266) T ss_dssp SEEEEEETTEEEEEE T ss_pred CEEEEEECCEEEEEC T ss_conf 999999899899986 No 74 >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Probab=35.50 E-value=13 Score=13.47 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=6.1 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+|+..| T Consensus 223 v~vm~~G~Iv~~G 235 (257) T 1g6h_A 223 LYVMFNGQIIAEG 235 (257) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEE T ss_conf 9999799999993 No 75 >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Probab=34.80 E-value=13 Score=13.39 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=21.4 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEE Q ss_conf 868999752389835999980897699975126655246887860 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVK 218 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~ 218 (279) .|+|..+.+.+.. ..+.++.+++-..+-+..+....+++|+.|. T Consensus 320 ~g~V~~~e~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 363 (390) T 3gd7_A 320 EGEVQVVEQLGNE-TQIHIQIPSIRQNLVYRQNDVVLVEEGATFA 363 (390) T ss_dssp EEEEEEEEECSSC-EEEEEECTTCSSCEEEEESSCCCCCTTSEEE T ss_pred EEEEEEEEECCCE-EEEEEEECCCCEEEEEECCCCCCCCCCCEEE T ss_conf 9999999975993-9999999998679999858988899899999 No 76 >2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 1pnu_U 1pny_U 1vor_X 1vou_X 1vow_X 1voy_X ... Probab=33.57 E-value=14 Score=13.24 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=19.2 Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 4444204702667988888778767868999752 Q T0608 149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) .++|.|.-...-...+ ++|..+|+|.|... T Consensus 43 tk~hPG~NVg~GkD~T----LfAl~~G~V~F~~~ 72 (91) T 2zjr_T 43 TKFKAGQGVGMGRDHT----LFALSDGKVVFINK 72 (91) T ss_dssp SSSEECTTEECCTTSC----EEESSCEEEEEEEE T ss_pred CCCCCCCCEEECCCCC----EEEECCEEEEEEEC T ss_conf 7271888742768882----88850359999897 No 77 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Probab=32.69 E-value=14 Score=13.13 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=14.3 Q ss_pred CEEECCCEEEEEECCCCC Q ss_conf 786067268743065344 Q T0608 215 DPVKAGDLLGYMGDSGYG 232 (279) Q Consensus 215 ~~V~~Ge~IG~vG~TG~s 232 (279) =.+++||.||.+|.||.. T Consensus 1054 l~I~~Ge~vaIvG~SGSG 1071 (1284) T 3g5u_A 1054 LEVKKGQTLALVGSSGCG 1071 (1284) T ss_dssp EEECSSSEEEEECSSSTT T ss_pred EEECCCCEEEEECCCCCH T ss_conf 998898999998999980 No 78 >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Probab=31.91 E-value=15 Score=13.03 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=8.9 Q ss_pred CEEECCCCEEEEEEE Q ss_conf 778767868999752 Q T0608 168 PVVSMTDGVVTEKGW 182 (279) Q Consensus 168 PV~A~~dG~V~~a~~ 182 (279) -|.-..+|+|+..|. T Consensus 213 rv~vl~~G~iv~~G~ 227 (275) T 3gfo_A 213 NVFVMKEGRVILQGN 227 (275) T ss_dssp EEEEEETTEEEEEEC T ss_pred EEEEEECCEEEEECC T ss_conf 999997999999879 No 79 >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Probab=30.77 E-value=15 Score=12.89 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=6.5 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+|+..| T Consensus 229 i~vm~~G~iv~~G 241 (263) T 2olj_A 229 VLFMDGGYIIEEG 241 (263) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999988 No 80 >1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A Probab=30.46 E-value=16 Score=12.85 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=33.0 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE--CCCCCE Q ss_conf 775327856788778766874444204702667988888778767868999752--389835 Q T0608 129 DTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW--LEKGGW 188 (279) Q Consensus 129 p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~--~~~yGn 188 (279) |...=+.+.-+||.....+.- -..++...........|-+++..|.|+|+|+ .+.||. T Consensus 7 pAP~CV~~~qsWRYT~v~N~C--s~tvsVtV~Y~dG~~~PCrv~~PG~~Tf~G~Gt~Gn~gh 66 (74) T 1ok0_A 7 PAPSCVTLYQSWRYSQADNGC--AETVTVKVVYEDDTEGLCYAVAPGQITTVGDGYIGSHGH 66 (74) T ss_dssp BCCTTEEEEECSSEEEEEECS--SSCEEEEEEETTSCBCCCEEECTTCEEEEEECTTSTTCS T ss_pred CCCCCEEEECCEEEEEEECCC--CCCEEEEEEEECCCCCEEEEECCCCEECCCCCCCCCCCC T ss_conf 680037870545888540897--443799999808970201661897476142355477777 No 81 >2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Sulfolobus solfataricus P2} SCOP: d.77.1.2 Probab=30.45 E-value=16 Score=12.85 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=4.4 Q ss_pred CHHHHHHHHHC Q ss_conf 70899988622 Q T0608 260 NPYPVLRYAEN 270 (279) Q Consensus 260 nP~~~l~~~~~ 270 (279) ||.-+++|++| T Consensus 120 ~~~~lidwL~p 130 (155) T 2nwu_A 120 NPKEIVDWLAP 130 (155) T ss_dssp CHHHHHHHHSC T ss_pred CHHHHHHHHCC T ss_conf 98999987203 No 82 >3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13 Probab=30.10 E-value=16 Score=12.80 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=4.7 Q ss_pred HHHHHHCCCEE Q ss_conf 99886228767 Q T0608 264 VLRYAENARIK 274 (279) Q Consensus 264 ~l~~~~~~~~~ 274 (279) .+.|.+++-+. T Consensus 326 a~~~l~~~~~~ 336 (343) T 3dhw_C 326 AIAWLQEHHVK 336 (343) T ss_dssp HHHHHHHTTEE T ss_pred HHHHHHHCCCE T ss_conf 99999985986 No 83 >1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens} Probab=29.79 E-value=13 Score=13.59 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=24.2 Q ss_pred CEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEE Q ss_conf 689997523898359999808976999751266552468878606726874 Q T0608 175 GVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGY 225 (279) Q Consensus 175 G~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~ 225 (279) |+|.. |..+||- |...++=.-++-|.+.+ . .+..++.||.+-+ T Consensus 11 G~V~~--~~~GfGF---I~~~d~~~dvFfH~s~~-~--~~~~l~~G~~V~F 53 (89) T 1x65_A 11 GVIAA--MRDGFGF---IKCVDRDVRMFFHFSEI-L--DGNQLHIADEVEF 53 (89) T ss_dssp EEEEE--CCTTBCE---EEESSSSSCCCCBTTGG-G--GSCCCCTTCCEEE T ss_pred EEEEE--ECCCEEE---EECCCCCCCEEEEHHHC-C--CCCCCCCCCEEEE T ss_conf 99999--7087147---86289994089993460-5--8898789999999 No 84 >2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A* Probab=29.28 E-value=16 Score=12.69 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=22.0 Q ss_pred CEEECCCEEEEEECCCCC-CCCCCCCCCCCE--EEEEEECCC Q ss_conf 786067268743065344-677778889722--589998178 Q T0608 215 DPVKAGDLLGYMGDSGYG-EEGTTGEFPVHL--HLGIYLKEG 253 (279) Q Consensus 215 ~~V~~Ge~IG~vG~TG~s-t~~~~~~~g~HL--Hfei~~~~~ 253 (279) =.+++||.||.+|.||.. |+.-.--.|-.= .=+|+++|. T Consensus 362 ~~i~~G~~i~IvG~sGsGKSTll~ll~gl~~~~~G~I~~~g~ 403 (578) T 2hyd_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578) T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE T ss_conf 897289789998589851768999983666799828999999 No 85 >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Probab=28.62 E-value=17 Score=12.61 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=5.1 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+|+..| T Consensus 209 i~vl~~G~iv~~g 221 (240) T 1ji0_A 209 GYVLETGQIVLEG 221 (240) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEE T ss_conf 9999899999992 No 86 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Probab=28.53 E-value=13 Score=13.39 Aligned_cols=13 Identities=8% Similarity=-0.148 Sum_probs=10.2 Q ss_pred CCCEEEEEEECCC Q ss_conf 9722589998178 Q T0608 241 PVHLHLGIYLKEG 253 (279) Q Consensus 241 g~HLHfei~~~~~ 253 (279) |.|+|+.++-+|+ T Consensus 229 g~H~H~Sl~~~g~ 241 (421) T 2j9i_A 229 GSHSIWDVGAAGT 241 (421) T ss_dssp BCCEEECEEETTE T ss_pred CEEEEEECCCCCC T ss_conf 4179984379997 No 87 >2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A* Probab=28.31 E-value=15 Score=13.05 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.7 Q ss_pred CCCEEEEEEECCC Q ss_conf 9722589998178 Q T0608 241 PVHLHLGIYLKEG 253 (279) Q Consensus 241 g~HLHfei~~~~~ 253 (279) |.|+|+.+|-.++ T Consensus 282 G~H~H~SL~~~~~ 294 (486) T 2bvc_A 282 GMHCHQSLWKDGA 294 (486) T ss_dssp CEEEEEEEEETTE T ss_pred CEEEEEEEEECCC T ss_conf 6007888641798 No 88 >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A Probab=28.19 E-value=17 Score=12.55 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=6.0 Q ss_pred EEECCCCEEEE Q ss_conf 78767868999 Q T0608 169 VVSMTDGVVTE 179 (279) Q Consensus 169 V~A~~dG~V~~ 179 (279) |+...+|+|+. T Consensus 209 i~~l~~G~iv~ 219 (224) T 2pcj_A 209 TLEMKDGKVVG 219 (224) T ss_dssp EEEEETTEEEE T ss_pred EEEEECCEEEE T ss_conf 99996999999 No 89 >3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} Probab=28.00 E-value=17 Score=12.53 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=30.1 Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC-CEEECCCEEEEE Q ss_conf 786899975238983599998089769997512665524688-786067268743 Q T0608 173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG-DPVKAGDLLGYM 226 (279) Q Consensus 173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G-~~V~~Ge~IG~v 226 (279) .-|+|..=....|||- |.-+ +| .-+|-|.+.+ . ..| ..+..||.+-+. T Consensus 2 ~~G~Vkwf~~~kGfGF-I~~d--~g-~DvFvH~s~i-~-~~g~~~l~~G~~V~f~ 50 (73) T 3a0j_A 2 QKGRVKWFNAEKGYGF-IERE--GD-TDVFVHYTAI-N-AKGFRTLNEGDIVTFD 50 (73) T ss_dssp EEEEEEEEETTTTEEE-EECT--TS-CCEEEEGGGB-C-SSSCSSCCTTCEEEEE T ss_pred CCEEEEEEECCCCEEE-EECC--CC-CEEEEEEHHH-C-CCCCCCCCCCCEEEEE T ss_conf 9828999959998688-3048--99-7099983671-5-1379868999999999 No 90 >2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str} Probab=26.79 E-value=18 Score=12.36 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=18.4 Q ss_pred CCCCEEEEEEE-CCCCCEEEEEEECC-CEEEEEEECCCCCCCCCCCEE Q ss_conf 67868999752-38983599998089-769997512665524688786 Q T0608 172 MTDGVVTEKGW-LEKGGWRIGITAPT-GAYFYYAHLDSYAELEKGDPV 217 (279) Q Consensus 172 ~~dG~V~~a~~-~~~yGn~ViI~Hg~-G~~T~Y~HL~~i~~V~~G~~V 217 (279) +..|.+.+||+ ++|||.......|+ ...-+..|-..+ .++.||.| T Consensus 286 ~~~~~~~~Agf~DpGfgg~~~~~~g~~~vLev~~~~~p~-~l~~G~~I 332 (370) T 2r9q_A 286 VGEFRVHYAGFFDPGFGHAQAGGTGSRAVLEVRSHEVPF-ILEHGQIV 332 (370) T ss_dssp TTTEEEESCCEECTTTTC-----CCEEEEEEEEECSSCE-EEETTCEE T ss_pred HCCCEEEECCEECCCCCCCCCCCCCCEEEEEEECCCCCE-EEECCCEE T ss_conf 147357725507589776445567865999993588886-97089999 No 91 >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Probab=26.45 E-value=18 Score=12.32 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=19.4 Q ss_pred CEEECCCCEEEEEEECC----------CCCEEEEEEECCCEE Q ss_conf 77876786899975238----------983599998089769 Q T0608 168 PVVSMTDGVVTEKGWLE----------KGGWRIGITAPTGAY 199 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~----------~yGn~ViI~Hg~G~~ 199 (279) -|....+|.|+.-|... .|+.-|.|.+-++.+ T Consensus 232 rvivl~~G~iv~~G~~~dv~~~e~~~~~y~~~~~i~~~~~~~ 273 (279) T 2ihy_A 232 KILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRF 273 (279) T ss_dssp EEEEEETTEEEEEEEHHHHCSHHHHHHHHTSCEEEEEETTEE T ss_pred EEEEEECCEEEEECCHHHHHCCHHHHHHHCCCCEEEEECCEE T ss_conf 999998998999838999827977999857861168789982 No 92 >3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A Probab=25.27 E-value=19 Score=12.16 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=5.9 Q ss_pred ECCCEEEEEEC Q ss_conf 06726874306 Q T0608 218 KAGDLLGYMGD 228 (279) Q Consensus 218 ~~Ge~IG~vG~ 228 (279) +.|++||+-|| T Consensus 192 ~~G~VVGLYGN 202 (236) T 3lkw_A 192 REGKIVGLYGN 202 (236) T ss_dssp TTSCEEEESCC T ss_pred CCCCEEEEECC T ss_conf 89979998535 No 93 >2qam_W 50S ribosomal protein L27; RNA-protein complex, ribosome; HET: NMY; 3.21A {Escherichia coli} SCOP: b.84.4.1 PDB: 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* 2qp1_W* ... Probab=24.78 E-value=11 Score=14.04 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=19.6 Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 74444204702667988888778767868999752 Q T0608 148 GKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 148 ~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) ..++|.|.-...-...+ ++|..||+|.|... T Consensus 41 Gtk~hPG~nVg~GkD~T----LfAl~~G~V~F~~~ 71 (84) T 2qam_W 41 GTKFHAGANVGCGRDHT----LFAKADGKVKFEVK 71 (84) T ss_dssp SSSCBCTTCCCCCTTCC----BCCCSSSCCCCCCC T ss_pred CCCEECCCCEEECCCCC----EEECCCEEEEEEEE T ss_conf 77370888720878774----78703679998694 No 94 >2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A Probab=24.78 E-value=19 Score=12.09 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=4.0 Q ss_pred CCCEEEEEEC Q ss_conf 6726874306 Q T0608 219 AGDLLGYMGD 228 (279) Q Consensus 219 ~Ge~IG~vG~ 228 (279) .|++||+-|| T Consensus 143 ~G~vVGLYGN 152 (185) T 2fom_B 143 KGKVVGLYGN 152 (185) T ss_dssp TSCEEEETTC T ss_pred CCCEEEEECC T ss_conf 9869998656 No 95 >2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-sandwich, mixed alpha/beta structure; 1.8A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Probab=24.74 E-value=19 Score=12.08 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=10.1 Q ss_pred CCCEEEEEEECCC Q ss_conf 9722589998178 Q T0608 241 PVHLHLGIYLKEG 253 (279) Q Consensus 241 g~HLHfei~~~~~ 253 (279) .||+||-|+..|. T Consensus 132 ~~HIH~~V~~~g~ 144 (209) T 2bum_A 132 APHISLIIFARGI 144 (209) T ss_dssp CCCEEEEEECTTC T ss_pred CCEEEEEEEECCC T ss_conf 8558999995980 No 96 >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Probab=24.17 E-value=19 Score=12.00 Aligned_cols=32 Identities=31% Similarity=0.226 Sum_probs=12.2 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCEEECCC Q ss_conf 999980897699975126655246887860672 Q T0608 189 RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD 221 (279) Q Consensus 189 ~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge 221 (279) +|+|.|...... |..++.+.-+..|..|..|+ T Consensus 217 ii~isH~~~~~~-~~~~Dri~vl~~G~iv~~G~ 248 (267) T 2zu0_C 217 FIIVTHYQRILD-YIKPDYVHVLYQGRIVKSGD 248 (267) T ss_dssp EEEECSSGGGGG-TSCCSEEEEEETTEEEEEEC T ss_pred EEEEEECHHHHH-HHCCCEEEEEECCEEEEECC T ss_conf 999993669886-65499999998998999949 No 97 >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Probab=24.15 E-value=19 Score=12.00 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=26.6 Q ss_pred EECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEE Q ss_conf 8767868999752389835999980897699975126655246887860 Q T0608 170 VSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVK 218 (279) Q Consensus 170 ~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~ 218 (279) .-...|+|....+.++ -..+.++.+++..+++.+- .. .++.|+.|. T Consensus 294 ~~~~~~~V~~~~~~G~-~~~v~~~~~~~~~~~~~~~-~~-~l~~G~~v~ 339 (353) T 1oxx_K 294 ILVGKGKVKVIGYQGG-LFRITITPLDSEEEIFTYS-DH-PIHSGEEVL 339 (353) T ss_dssp EEEEEEEEEEEEEETT-EEEEEEEETTCCCCEEEEE-SS-CCCTTCEEE T ss_pred CCEEEEEEEEEEEECC-EEEEEEEECCCEEEEEECC-CC-CCCCCCEEE T ss_conf 4146799999999689-2999999899769999868-88-939899999 No 98 >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Probab=23.48 E-value=20 Score=11.90 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=13.6 Q ss_pred CCCCEEECCCEEEEEECCCCC Q ss_conf 688786067268743065344 Q T0608 212 EKGDPVKAGDLLGYMGDSGYG 232 (279) Q Consensus 212 ~~G~~V~~Ge~IG~vG~TG~s 232 (279) ++|+.|++|+.+|.+-+.... T Consensus 45 ~~g~~v~~g~~~~~vEs~k~~ 65 (131) T 1hpc_A 45 EPGVSVTKGKGFGAVESVKAT 65 (131) T ss_dssp CTTCEECBTSEEEEEEESSCE T ss_pred CCCCEECCCCEEEEEEECCEE T ss_conf 999854289869999974305 No 99 >3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} Probab=23.33 E-value=20 Score=11.88 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=19.2 Q ss_pred CCCCCCEE-ECCCEEEEEECCCCCCCCCCCCCCCCEEE Q ss_conf 24688786-06726874306534467777888972258 Q T0608 210 ELEKGDPV-KAGDLLGYMGDSGYGEEGTTGEFPVHLHL 246 (279) Q Consensus 210 ~V~~G~~V-~~Ge~IG~vG~TG~st~~~~~~~g~HLHf 246 (279) .+++||.| +=|++||..-. +-..|-|+|- T Consensus 69 ~I~~Ge~ViKYG~~IG~A~~--------dI~~GehVHt 98 (105) T 3k3s_A 69 DIAKGANVIKYGLPIGYALA--------DIAAGEHVHA 98 (105) T ss_dssp CBCTTCEEEETTEEEEEESS--------CBCTTCEEST T ss_pred HCCCCCEEEECCCEEEEECC--------CCCCCCEEEE T ss_conf 02599983878958278814--------2679988873 No 100 >2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} SCOP: b.47.1.3 Probab=22.32 E-value=21 Score=11.73 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=4.0 Q ss_pred CCCEEEEEEC Q ss_conf 6726874306 Q T0608 219 AGDLLGYMGD 228 (279) Q Consensus 219 ~Ge~IG~vG~ 228 (279) .|++||+-|| T Consensus 128 ~G~vVGLYGn 137 (172) T 2fp7_B 128 NGDVIGLYGN 137 (172) T ss_dssp TSCEEEESCC T ss_pred CCCEEEEECC T ss_conf 8969998535 No 101 >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=22.20 E-value=19 Score=12.12 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=27.7 Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEE--CCCEEEEEEECCCCC---------CCCCCCEEECCCEEEE Q ss_conf 78767868999752389835999980--897699975126655---------2468878606726874 Q T0608 169 VVSMTDGVVTEKGWLEKGGWRIGITA--PTGAYFYYAHLDSYA---------ELEKGDPVKAGDLLGY 225 (279) Q Consensus 169 V~A~~dG~V~~a~~~~~yGn~ViI~H--g~G~~T~Y~HL~~i~---------~V~~G~~V~~Ge~IG~ 225 (279) +..+..|+|.... .||-+|.|.- -+| ..|++++. .++.||.|+. .+|.. T Consensus 22 ~~~I~~G~V~~V~---~fG~FV~l~g~~~dG----lvhisels~~~v~~~~~~~~vGd~V~v-kVi~i 81 (119) T 2cqo_A 22 LYTIFQGEVAMVT---DYGAFIKIPGCRKQG----LVHRTHMSSCRVDKPSEIVDVGDKVWV-KLIGR 81 (119) T ss_dssp TTCEEEEEEEEEE---TTEEEEECTTCSSCE----EEEHHHHCSSCCSCHHHHCCTTCEEEE-EEEEE T ss_pred CCCEEEEEEEEEE---CCEEEEEECCCCEEE----EEEEHHCCCCCCCCHHHEECCCCEEEE-EEEEE T ss_conf 7847999999995---568899937974357----861011045566798780279999999-99999 No 102 >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Probab=22.10 E-value=5.1 Score=17.05 Aligned_cols=53 Identities=28% Similarity=0.230 Sum_probs=23.0 Q ss_pred CEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEE Q ss_conf 778767868999752389835999980897699975-12665524688786067268 Q T0608 168 PVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLL 223 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~I 223 (279) ||.+-.+|.|...... ....++.-..+...-|. .....+.|+.||.|++||.| T Consensus 1013 ~ii~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~ip~~~~l~v~~gd~v~~g~~l 1066 (1265) T 1hqm_D 1013 AVISEIDGVVRIEEGE---DRLSVFVESEGFSKEYKLPKDARLLVKDGDYVEAGQPL 1066 (1265) T ss_dssp BCCCSSSCBCCCCCCS---SCCCCCCBCSSCCCCCCCSSCCCCCCCSCCSSTTCSCC T ss_pred CEEECCCCEEEEEECC---CEEEEEECCCCEEEEEEECCCCEEEECCCCEEECCCEE T ss_conf 3597579759997078---55999978998289999679998986599998079998 No 103 >1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Probab=22.08 E-value=21 Score=11.69 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.2 Q ss_pred CCCEEEEEEECCC Q ss_conf 9722589998178 Q T0608 241 PVHLHLGIYLKEG 253 (279) Q Consensus 241 g~HLHfei~~~~~ 253 (279) |.|+|+.+|-.++ T Consensus 267 G~H~H~Sl~~~g~ 279 (468) T 1f52_A 267 GMHCHMSLAKNGT 279 (468) T ss_dssp CEEEEEEEEETTE T ss_pred EEEEEECCCCCCC T ss_conf 1479972456998 No 104 >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Probab=21.99 E-value=21 Score=11.68 Aligned_cols=27 Identities=22% Similarity=0.090 Sum_probs=10.7 Q ss_pred EECCCCEEEEEEECCCCCEEEEEEECCC Q ss_conf 8767868999752389835999980897 Q T0608 170 VSMTDGVVTEKGWLEKGGWRIGITAPTG 197 (279) Q Consensus 170 ~A~~dG~V~~a~~~~~yGn~ViI~Hg~G 197 (279) .....|+|+...+.+. -..|.++-|.. T Consensus 288 ~~~l~~~V~~~~~~g~-~~~v~~~~g~~ 314 (348) T 3d31_A 288 RNSLQGRVTEAWVLGA-LVRVKVDCGVP 314 (348) T ss_dssp SEEEEEEEEEEEECSS-EEEEEEESSSE T ss_pred CCEEEEEEEEEEEECC-EEEEEEEECCE T ss_conf 6669999999999299-89999972996 No 105 >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Probab=21.90 E-value=21 Score=11.66 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=27.9 Q ss_pred CCCEEECCCEEEEEECCCCCCC-CCCCC--CCCCEEEEEEECCCCCCCCCCHHHHHH Q ss_conf 8878606726874306534467-77788--897225899981788863217089998 Q T0608 213 KGDPVKAGDLLGYMGDSGYGEE-GTTGE--FPVHLHLGIYLKEGTEEISVNPYPVLR 266 (279) Q Consensus 213 ~G~~V~~Ge~IG~vG~TG~st~-~~~~~--~g~HLHfei~~~~~~~~~~vnP~~~l~ 266 (279) .-=.+++|+.+|.+|.||..-+ .-.-- .=+.-+=+|+++|. +-..+||..+-+ T Consensus 362 inl~i~~G~~iaIvG~sGsGKSTLl~lL~g~~~p~~G~i~i~g~-~~~~~~~~~~r~ 417 (582) T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH-DLREYTLASLRN 417 (582) T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE-ETTTBCHHHHHH T ss_pred EECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC-CCCCCCHHHHHH T ss_conf 50144688779986799974657999983567877873886561-366576556641 No 106 >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12 Probab=21.67 E-value=21 Score=11.63 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=5.2 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |.-..+|+|+..| T Consensus 216 v~vl~~G~iv~~g 228 (256) T 1vpl_A 216 IALIHNGTIVETG 228 (256) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999599999993 No 107 >2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} Probab=21.63 E-value=22 Score=11.62 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=21.3 Q ss_pred CCEEEEEEECCCCCEEEEEEE-CCCEEEEEEECCCCCCCCCCCEEECCCEEEE Q ss_conf 868999752389835999980-8976999751266552468878606726874 Q T0608 174 DGVVTEKGWLEKGGWRIGITA-PTGAYFYYAHLDSYAELEKGDPVKAGDLLGY 225 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~H-g~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~ 225 (279) -|+|.. +..+|| .|.. .++-.-+|-|.+.+ . .....+.||.+-+ T Consensus 10 ~G~v~~--~k~~fG---FI~~~d~~g~dvFfH~s~v-~--~~~~l~~Gd~V~F 54 (79) T 2ytv_A 10 RATVEC--VKDQFG---FINYEVGDSKKLFFHVKEV-Q--DGIELQAGDEVEF 54 (79) T ss_dssp CEEEEE--CCSSEE---EESCCCSSSSSEEEETTTC-C--SSCCCCTTCEEEC T ss_pred EEEEEE--ECCCCC---EEECCCCCCCEEEEEHHHC-C--CCCCCCCCCEEEE T ss_conf 799999--868862---3772589995899998993-7--9974799999999 No 108 >3d4r_A Domain of unknown function from the PFAM-B_34464 family; NP_987166.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Methanococcus maripaludis} Probab=21.58 E-value=22 Score=11.61 Aligned_cols=42 Identities=21% Similarity=0.029 Sum_probs=23.3 Q ss_pred EEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 5999980897699975-126655246887860672687430653 Q T0608 188 WRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 188 n~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) +.+.|+-|.-+..+=+ +....+-+..|+.|.+|+.+|++= || T Consensus 92 ~~~~lkkGt~L~lvpaeG~~v~~i~~~G~rV~egd~lA~i~-T~ 134 (169) T 3d4r_A 92 TLTYLKAGTKLISVPAEGYKVYPIMDFGFRVLKGYRLATLE-SK 134 (169) T ss_dssp EEEEECTTCBCEEEEECSSEEEECCCCSEEECTTCEEEEEE-CT T ss_pred EEEEECCCCEEEEEECCCEEEEEECCCCCEEECCCEEEEEE-EC T ss_conf 68998699999999828579999746553771286279998-16 No 109 >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8} Probab=21.55 E-value=22 Score=11.61 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=18.0 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCE-EEEEEECCCCCCCCCCCEEE Q ss_conf 8689997523898359999808976-99975126655246887860 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGA-YFYYAHLDSYAELEKGDPVK 218 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~-~T~Y~HL~~i~~V~~G~~V~ 218 (279) .|+|+...+.+ -...+.++-++|- .++... +. ...++|+.|. T Consensus 297 ~~~V~~~~~~G-~~~~v~l~~~~g~~~~~~~~-~~-~~~~~G~~v~ 339 (359) T 2yyz_A 297 PGVVYVVEPLG-RDIIVNVKTEKGEIIKVFGD-TG-KAPQPGENVF 339 (359) T ss_dssp EEEEEEEEEET-TEEEEEEEETTSCEEEEECC-SS-CCCCTTCEEE T ss_pred EEEEEEEEEEC-CEEEEEEEECCCCEEEEECC-CC-CCCCCCCEEE T ss_conf 99999999969-93999999899869999908-98-8999899999 No 110 >3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} Probab=21.55 E-value=22 Score=11.61 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=4.0 Q ss_pred CCCEEECCCCEE Q ss_conf 887787678689 Q T0608 166 YYPVVSMTDGVV 177 (279) Q Consensus 166 ~~PV~A~~dG~V 177 (279) +.||. -.+|.| T Consensus 140 GSPIi-~~~G~v 150 (198) T 3e90_B 140 GSPIV-DKNGDV 150 (198) T ss_dssp TCEEE-CTTCCE T ss_pred CCCEE-CCCCCE T ss_conf 99647-458969 No 111 >2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris CGA009} Probab=21.18 E-value=22 Score=11.55 Aligned_cols=28 Identities=18% Similarity=-0.001 Sum_probs=20.4 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEE Q ss_conf 8689997523898359999808976999 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGAYFY 201 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~ 201 (279) .+..+.+...-+.++.|.|.|++-.+.+ T Consensus 28 ~~~~i~S~~L~~~~~~v~I~H~g~~Y~L 55 (67) T 2jra_A 28 VGNQIDSRELFTVDREIVIAHGDDRYRL 55 (67) T ss_dssp ETTEEEHHHHTTSSSEEEEEETTEEEEE T ss_pred CCCCCCHHHHHCCCCEEEEEECCEEEEE T ss_conf 6561079998489978999979908997 No 112 >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Probab=21.17 E-value=22 Score=11.55 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=17.4 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCC--CCCCCCCCEE Q ss_conf 8689997523898359999808976999751266--5524688786 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDS--YAELEKGDPV 217 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~--i~~V~~G~~V 217 (279) .|+|+...+. |-...|.++-++|- .+-.|... .....+|+.| T Consensus 300 ~~~V~~~~~~-G~~~~v~~~~~~g~-~l~v~~~~~~~~~~~~g~~V 343 (355) T 1z47_A 300 HAQVVRSAFK-GSYSACWIRTKDGE-VWEVHVPSADRHRWSPGAWV 343 (355) T ss_dssp SEEEEEEEEC-SSSEEEEEEETTSC-EEEEEECGGGTTTCCTTCEE T ss_pred EEEEEEEEEE-CCCEEEEEEECCCC-EEEEEECCCCCCCCCCCCEE T ss_conf 9999999995-89199999989898-99999737424689999699 No 113 >2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} SCOP: d.13.1.1 Probab=20.86 E-value=22 Score=11.50 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=11.4 Q ss_pred CCCEEEEEEECCCCC Q ss_conf 972258999817888 Q T0608 241 PVHLHLGIYLKEGTE 255 (279) Q Consensus 241 g~HLHfei~~~~~~~ 255 (279) -||||+-|.-+-..+ T Consensus 94 v~HlH~HiiPR~~~D 108 (154) T 2oik_A 94 TPHVHWHVIPRFKRD 108 (154) T ss_dssp SCSCEEEEEEECTTS T ss_pred CCEEEEEEECCCCCC T ss_conf 788999995266788 No 114 >3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1 Probab=20.83 E-value=13 Score=13.62 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=19.6 Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 74444204702667988888778767868999752 Q T0608 148 GKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 148 ~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) +.++|.|.....-...+ ++|..||+|.|... T Consensus 99 GTkfhPG~NVg~GkD~T----LfAl~~G~V~F~~~ 129 (198) T 3bbo_X 99 GTKFHAGKNVGIGKDHT----IFSLIDGLVKFEKF 129 (198) T ss_dssp CCSSCCCCSSSSCCCCC----SBCCSCCCCCSSSS T ss_pred CCCCCCCCCCCCCCCCE----EEEECCEEEEEEEC T ss_conf 78463898803888880----78715679999985 No 115 >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Probab=20.51 E-value=23 Score=11.45 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=29.3 Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEE---CCCEEEEEECCC Q ss_conf 7868999752389835999980897699975126655246887860---672687430653 Q T0608 173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVK---AGDLLGYMGDSG 230 (279) Q Consensus 173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~---~Ge~IG~vG~TG 230 (279) ..|+|....+.+. -..+.++.++...++-.. .-..++.|+.|. ..+.+=+-|+|- T Consensus 295 l~~~V~~~~~~G~-~~~v~~~~~~~~l~~~~~--~~~~~~~g~~v~l~~~~~~l~f~~~t~ 352 (359) T 3fvq_A 295 IHAVVLKTTPKAR-HTEISLRAGQTVLTLNLP--SAPTLSDGISAVLHLDGPALFFPGNTL 352 (359) T ss_dssp EEEEEEEEEECSS-SEEEEEEETTEEEEEEC-------CCTTCEEEEEECSCEEEEEC--- T ss_pred EEEEEEEEEEECC-EEEEEEEECCEEEEEEEC--CCCCCCCCCEEEEEECCCEEECCCCCC T ss_conf 8999999999799-899999989999999979--999999899999998871398899976 No 116 >1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5 Probab=20.41 E-value=23 Score=11.43 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=27.2 Q ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCC-CEEECCCEEEE Q ss_conf 86899975238983599998089769997512665524688-78606726874 Q T0608 174 DGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG-DPVKAGDLLGY 225 (279) Q Consensus 174 dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G-~~V~~Ge~IG~ 225 (279) .|+|..=....||| +|.-+ +| .-+|-|.+.+ . ..| +.+..||.+-+ T Consensus 2 ~G~Vk~f~~~kGyG-FI~~~--~g-~diF~H~s~l-~-~~~~~~L~~G~~V~f 48 (66) T 1g6p_A 2 RGKVKWFDSKKGYG-FITKD--EG-GDVFVHWSAI-E-MEGFKTLKEGQVVEF 48 (66) T ss_dssp CEEEEEEETTTTEE-EEEET--TS-CBCBBCSSSS-C-CSSCCCCCSSSEEEE T ss_pred EEEEEEEECCCCEE-EEECC--CC-CEEEEEEHHH-C-CCCCCCCCCCCEEEE T ss_conf 48999995999988-98728--99-7799991883-4-247887899999999 No 117 >3pcg_M Protocatechuate 3,4-dioxygenase; iron, nonheme, metalloprotein, oxidoreductase; HET: 4HP; 1.96A {Pseudomonas putida} SCOP: b.3.6.1 PDB: 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 1ykp_B* 1yko_B* 3pcd_M 1ykn_B* 1ykm_B* 1ykk_B* 1ykl_B* Probab=20.07 E-value=23 Score=11.37 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=15.3 Q ss_pred CCCCEEEEEEECCCCCEEEEEEECC Q ss_conf 6786899975238983599998089 Q T0608 172 MTDGVVTEKGWLEKGGWRIGITAPT 196 (279) Q Consensus 172 ~~dG~V~~a~~~~~yGn~ViI~Hg~ 196 (279) .-.|+|.-..-..--|-+|.|=|.| T Consensus 79 ~v~GrV~D~~g~Pv~~A~VEiWQAd 103 (238) T 3pcg_M 79 IVAGRVVDQYGKPVPNTLVEMWQAN 103 (238) T ss_dssp EEEEEEEETTSCBCTTCEEEEECCC T ss_pred EEEEEEECCCCCCCCCCEEEEEECC T ss_conf 9999998499988178679998579 Done!