Query T0608 ZP_02041710.1, Ruminococcus gnavus, 279 residues Match_columns 279 No_of_seqs 132 out of 1949 Neff 8.5 Searched_HMMs 15564 Date Mon Jul 5 09:11:16 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0608.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0608.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1qwya_ b.84.3.2 (A:) Peptidog 99.9 1.9E-27 1.3E-31 252.1 11.5 127 123-266 142-270 (270) 2 d1gpra_ b.84.3.1 (A:) Glucose 96.7 0.0034 2.2E-07 43.0 6.9 98 126-233 12-124 (158) 3 d2f3ga_ b.84.3.1 (A:) Glucose- 96.3 0.0081 5.2E-07 39.8 7.2 91 128-228 6-106 (150) 4 d1gpra_ b.84.3.1 (A:) Glucose 96.3 0.0098 6.3E-07 39.1 7.5 98 126-233 12-124 (158) 5 d1ci3m2 b.84.2.2 (M:170-231) C 96.3 0.006 3.8E-07 40.9 6.1 56 169-224 2-59 (62) 6 d2gpra_ b.84.3.1 (A:) Glucose 96.2 0.0079 5.1E-07 39.9 6.7 98 126-233 10-122 (154) 7 d1e2wa2 b.84.2.2 (A:169-232) C 95.5 0.021 1.4E-06 36.2 6.4 56 169-224 2-61 (64) 8 d1hcza2 b.84.2.2 (A:168-230) C 93.3 0.093 6E-06 30.6 5.5 53 169-223 4-60 (63) 9 d1tu2b2 b.84.2.2 (B:170-235) C 92.0 0.11 6.8E-06 30.2 4.3 53 169-223 3-62 (66) 10 d2pcfb_ i.4.1.1 (B:) Cytochrom 89.9 0.46 2.9E-05 24.7 5.9 62 167-230 169-234 (250) 11 d1brwa3 d.41.3.1 (A:331-433) P 84.2 0.21 1.4E-05 27.6 1.5 52 168-228 7-69 (103) 12 d1brwa3 d.41.3.1 (A:331-433) P 83.9 0.22 1.4E-05 27.4 1.5 53 168-229 7-70 (103) 13 d2tpta3 d.41.3.1 (A:336-440) T 82.1 0.19 1.2E-05 27.9 0.6 53 168-229 7-70 (105) 14 d1dcza_ b.84.1.1 (A:) Biotin c 81.2 1.6 0.0001 20.1 7.6 59 168-227 10-77 (77) 15 d1vf7a_ f.46.1.1 (A:) Multidru 80.5 0.47 3E-05 24.6 2.2 25 195-219 207-232 (237) 16 d1bdoa_ b.84.1.1 (A:) Biotinyl 74.4 0.93 6E-05 22.0 2.3 18 211-228 27-44 (80) 17 d1laba_ b.84.1.1 (A:) Lipoyl d 73.8 0.96 6.1E-05 21.9 2.2 26 205-231 55-80 (80) 18 d1bdoa_ b.84.1.1 (A:) Biotinyl 73.2 1 6.7E-05 21.6 2.3 16 210-225 63-78 (80) 19 d1vf5c2 b.84.2.2 (C:170-231) C 72.5 0.13 8.5E-06 29.3 -2.5 53 169-223 3-62 (62) 20 d1ghja_ b.84.1.1 (A:) Lipoyl d 72.5 1.3 8.5E-05 20.7 2.7 25 205-230 55-79 (79) 21 d1pmra_ b.84.1.1 (A:) Lipoyl d 70.8 1.4 8.9E-05 20.5 2.4 22 205-227 56-77 (80) 22 d1gjxa_ b.84.1.1 (A:) Lipoyl d 69.8 1.4 8.7E-05 20.6 2.2 27 204-231 54-80 (81) 23 d1qjoa_ b.84.1.1 (A:) Lipoyl d 68.5 1.6 0.0001 20.0 2.4 24 206-230 55-78 (80) 24 d1y8ob1 b.84.1.1 (B:128-229) L 65.4 2 0.00013 19.2 2.3 27 205-232 59-86 (102) 25 d1k8ma_ b.84.1.1 (A:) Lipoyl d 64.2 1.6 0.0001 19.9 1.7 24 206-230 59-82 (87) 26 d1uoua3 d.41.3.1 (A:374-480) T 63.5 2.1 0.00014 18.9 2.2 53 168-229 7-68 (105) 27 d1ee8a2 b.113.1.1 (A:1-121) DN 58.5 4.4 0.00028 16.2 3.6 55 185-275 49-103 (121) 28 d1smyd_ e.29.1.2 (D:) RNA-poly 58.5 4.4 0.00028 16.2 4.9 55 167-224 1270-1325(1504) 29 d1qpoa2 d.41.2.1 (A:2-116) Qui 49.7 5.1 0.00033 15.6 2.3 17 210-226 76-92 (115) 30 d1o4ua2 d.41.2.1 (A:1-103) Qui 48.8 5.7 0.00037 15.2 2.4 17 210-226 64-80 (103) 31 d1qapa2 d.41.2.1 (A:8-129) Qui 48.4 5.6 0.00036 15.3 2.3 17 210-226 83-99 (122) 32 d1o4ua2 d.41.2.1 (A:1-103) Qui 47.4 6.2 0.0004 14.9 2.4 17 210-226 64-80 (103) 33 d2pmka1 c.37.1.12 (A:467-707) 47.0 5.6 0.00036 15.3 2.1 28 189-219 191-218 (241) 34 d3b60a1 c.37.1.12 (A:329-581) 44.9 6.5 0.00042 14.8 2.2 13 169-181 220-232 (253) 35 d1d8ca_ c.1.13.1 (A:) Malate s 43.4 6 0.00038 15.0 1.8 50 217-277 209-258 (720) 36 d1v8qa_ b.84.4.1 (A:) TT0826 { 43.3 7 0.00045 14.5 2.1 30 149-182 24-53 (66) 37 d1iyua_ b.84.1.1 (A:) Lipoyl d 43.2 7.2 0.00046 14.4 5.6 37 193-230 36-76 (79) 38 d1l2ta_ c.37.1.12 (A:) MJ0796 42.7 7 0.00045 14.4 2.1 13 169-181 215-227 (230) 39 d1jj7a_ c.37.1.12 (A:) Peptide 41.2 7.4 0.00048 14.2 2.0 16 205-220 218-233 (251) 40 d1l7vc_ c.37.1.12 (C:) ABC tra 41.0 6.1 0.00039 15.0 1.6 31 189-221 185-215 (231) 41 d1v8qa_ b.84.4.1 (A:) Ribosoma 40.6 7.8 0.0005 14.1 2.6 30 149-182 24-53 (66) 42 d2hyda1 c.37.1.12 (A:324-578) 40.3 7.8 0.0005 14.1 2.0 14 169-182 222-235 (255) 43 d2zjrt1 b.84.4.1 (T:2-85) Ribo 39.9 7.9 0.00051 14.0 3.2 30 149-182 42-71 (84) 44 d1r0wa_ c.37.1.12 (A:) Cystic 39.1 8.1 0.00052 13.9 2.1 31 187-220 209-239 (281) 45 d1b0ua_ c.37.1.12 (A:) ATP-bin 37.3 8.6 0.00055 13.7 2.0 13 169-181 219-231 (258) 46 d1h95a_ b.40.4.5 (A:) Y-box pr 36.7 8.8 0.00056 13.6 4.2 33 173-208 9-41 (79) 47 d1oxxk2 c.37.1.12 (K:1-242) Gl 36.6 8.8 0.00056 13.6 1.8 13 169-181 211-223 (242) 48 d1g2912 c.37.1.12 (1:1-240) Ma 35.3 9.2 0.00059 13.4 2.2 13 169-181 210-222 (240) 49 d1mv5a_ c.37.1.12 (A:) Multidr 34.9 9.3 0.0006 13.4 2.0 31 188-221 190-220 (242) 50 d3dhwc1 c.37.1.12 (C:1-240) Me 32.4 10 0.00065 13.1 2.2 14 169-182 211-224 (240) 51 d2jdia2 b.49.1.1 (A:24-94) F1 31.7 10 0.00066 13.0 5.5 49 169-219 8-67 (71) 52 d1f52a2 d.128.1.1 (A:101-468) 30.2 10 0.00065 13.1 1.3 18 244-265 254-271 (368) 53 d2awna2 c.37.1.12 (A:4-235) Ma 29.9 11 0.0007 12.8 2.1 13 169-181 201-213 (232) 54 d3d31a2 c.37.1.12 (A:1-229) Su 29.6 11 0.00071 12.7 2.0 10 211-220 201-210 (229) 55 d1v43a3 c.37.1.12 (A:7-245) Hy 29.2 11 0.00072 12.7 2.1 12 169-180 207-218 (239) 56 d1h8eb2 b.49.1.1 (B:24-94) F1 28.2 12 0.00075 12.6 5.5 53 160-219 4-67 (71) 57 d3pcca_ b.3.6.1 (A:) Protocate 27.8 12 0.00076 12.5 1.4 13 241-253 123-135 (200) 58 d1vpla_ c.37.1.12 (A:) Putativ 27.3 12 0.00077 12.4 2.0 13 169-181 203-215 (238) 59 d1ji0a_ c.37.1.12 (A:) Branche 26.7 12 0.00079 12.4 2.1 13 169-181 209-221 (240) 60 d1mzya2 b.6.1.3 (A:194-371) Ni 26.4 12 0.0008 12.3 2.3 25 169-195 122-146 (178) 61 d2fomb1 b.47.1.3 (B:18-167) NS 26.4 12 0.0008 12.3 2.8 18 211-228 116-135 (150) 62 d1qz8a_ b.140.1.1 (A:) Replica 25.4 5.2 0.00034 15.5 -0.9 47 179-230 51-108 (111) 63 d1g6ha_ c.37.1.12 (A:) MJ1267 23.9 14 0.00087 12.0 2.1 12 169-180 220-231 (254) 64 d1hpca_ b.84.1.1 (A:) Protein 23.6 14 0.00089 11.9 2.7 22 212-233 45-66 (131) 65 d2bvca2 d.128.1.1 (A:105-478) 23.0 14 0.00091 11.8 1.9 12 241-252 170-181 (374) 66 d1n8ia_ c.1.13.1 (A:) Malate s 22.8 14 0.00091 11.8 1.3 49 218-277 212-260 (726) 67 d2gycu1 b.84.4.1 (U:1-84) Ribo 22.5 7.5 0.00048 14.2 -0.6 30 148-181 41-70 (84) 68 d1p7ta_ c.1.13.1 (A:) Malate s 22.2 15 0.00094 11.7 1.3 49 218-277 209-257 (719) 69 d1iyjb3 b.40.4.3 (B:2599-2731) 21.5 12 0.0008 12.3 0.4 63 189-252 48-114 (133) 70 d2bura1 b.3.6.1 (A:4-200) Prot 20.3 16 0.001 11.4 1.4 13 241-253 125-137 (202) 71 d2bvca2 d.128.1.1 (A:105-478) 20.2 16 0.001 11.4 1.0 12 241-252 170-181 (374) 72 d1fx0a2 b.49.1.1 (A:25-96) F1 20.0 16 0.001 11.4 4.8 49 169-219 8-67 (72) No 1 >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Probab=99.95 E-value=1.9e-27 Score=252.09 Aligned_cols=127 Identities=29% Similarity=0.440 Sum_probs=113.8 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE-CCCCCEEEEEEECCC-EEE Q ss_conf 665557775327856788778766874444204702667988888778767868999752-389835999980897-699 Q T0608 123 IPQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW-LEKGGWRIGITAPTG-AYF 200 (279) Q Consensus 123 ~~~~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~-~~~yGn~ViI~Hg~G-~~T 200 (279) .....||+.++++++||.++ ...+|.||||+++.|| ||+|++||+|+++++ ..++|++|+|+|+++ +.+ T Consensus 142 ~~~~~wp~~g~~~~~fG~~r-----~g~~H~GIDi~a~~Gt----pV~A~~dG~V~~ag~~~~g~G~~V~I~h~~g~~~t 212 (270) T d1qwya_ 142 AKDASWLTSRKQLQPYGQYH-----GGGAHYGVDYAMPENS----PVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQ 212 (270) T ss_dssp CSSCHHHHTSCEEECSEECT-----TSSEECSEEEECCTTC----EEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEE T ss_pred CCCCCCCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCC----EEEEEECEEEEEEEECCCCCCEEEEEEECCCCEEE T ss_conf 56533554785517868889-----7996486995889999----69941087999989756799869999708988799 Q ss_pred EEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH Q ss_conf 975126655246887860672687430653446777788897225899981788863217089998 Q T0608 201 YYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLR 266 (279) Q Consensus 201 ~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~ 266 (279) +|+||+++ .|++||.|++||+||.||+||+++ ||||||||+.++.....||||++||| T Consensus 213 ~Y~hl~~~-~V~~Gq~V~~Gq~IG~vGsTG~st-------gpHLHFEi~~~g~~~~~~VDP~~~Lk 270 (270) T d1qwya_ 213 WYMHNNRL-TVSAGDKVKAGDQIAYSGSTGNST-------APHVHFQRMSGGIGNQYAVDPTSYLQ 270 (270) T ss_dssp EEEEESEE-CCCTTCEECTTCEEEECCCCSSCS-------SSEEEEEEEESEESGGGEECCHHHHC T ss_pred EEEECCEE-ECCCCCEECCCCEEEEECCCCCCC-------CCEEEEEEEECCCCCCEEECCHHHHC T ss_conf 99837721-138899998689999967889989-------97799999989917976839479739 No 2 >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} SCOP: d1ax3a_ d2gpra_ d1glaf_ d1f3za_ Probab=96.65 E-value=0.0034 Score=43.00 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=68.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC Q ss_conf 55777532785678877876687444420470266798888877876786899975238983599998089769997512 Q T0608 126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL 205 (279) Q Consensus 126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL 205 (279) ..-|+.|.+.. -..-.+|.+...-+=.|+-|....|+ |+|+.||+|...-+ .+..+.|+..+|.. +.-|+ T Consensus 12 i~aPv~G~ii~-L~~v~D~vFs~k~lG~GvaI~P~~~~-----v~AP~dG~v~~i~~---T~HAigi~s~~G~e-iLiHi 81 (158) T d1gpra_ 12 FVSPITGEIHP-ITDVPDQVFSGKMMGDGFAILPSEGI-----VVSPVRGKILNVFP---TKHAIGLQSDGGRE-ILIHF 81 (158) T ss_dssp CBCSSSEEEEE-GGGSSSHHHHTTSSCEEEEEEESSCE-----EECSSSEEEEEECT---TSSEEEEEETTSCE-EEEEC T ss_pred EECCCCCEEEE-HHHCCCHHHCCCCCCCCEEEEECCCE-----EEEEECCEEEEEEC---CCCEEEEEECCCCE-EEEEE T ss_conf 97445216874-53488745804546885799736986-----88331509999326---89789999479978-99995 Q ss_pred C--C-------C-CCCCCCCEEECCCEEEEEEC-----CCCCC Q ss_conf 6--6-------5-52468878606726874306-----53446 Q T0608 206 D--S-------Y-AELEKGDPVKAGDLLGYMGD-----SGYGE 233 (279) Q Consensus 206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~-----TG~st 233 (279) - . + ..|++||.|++||.|..+=. .|+++ T Consensus 82 GiDTV~L~G~gF~~~v~~Gd~V~~G~~L~~~d~~~i~~~g~~~ 124 (158) T d1gpra_ 82 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSL 124 (158) T ss_dssp SBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBC T ss_pred CCEEEECCCCCEEEEEECCCEEECCCEEEEEEHHHHHHCCCCC T ss_conf 5412101896407885029898508689976047786328996 No 3 >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Probab=96.33 E-value=0.0081 Score=39.76 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=62.5 Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEECC- Q ss_conf 7775327856788778766874444204702667988888778767868999752389835999980897699975126- Q T0608 128 DDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLD- 206 (279) Q Consensus 128 ~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~- 206 (279) -|..|.+.. -..-.+|.+..+-+=.|+-|....|. |+|+.||+|...-+ .|..+-|...+|..- .-|+. T Consensus 6 aP~~G~vi~-L~~v~D~vFs~~~mG~GvAI~P~~~~-----v~AP~dG~V~~v~~---T~HAigi~t~~G~ei-LIHiGi 75 (150) T d2f3ga_ 6 APLSGEIVN-IEDVPDVVFAEKIVGDGIAIKPTGNK-----MVAPVDGTIGKIFE---TNHAFSIESDSGVEL-FVHFGI 75 (150) T ss_dssp CSSSEEEEC-GGGSSCHHHHTTSSCEEEEEEECSSE-----EECSSSEEEEEECT---TSSEEEEEETTSCEE-EEECSB T ss_pred EECCCEEEE-CCCCCCHHHHCCCCCCEEEEEECCCE-----EEEECCEEEEEECC---CCCEEEEEECCCEEE-EEEECC T ss_conf 826856988-23198958806884375999957992-----99510879999877---898999992893399-999764 Q ss_pred -C-------C-CCCCCCCEEECCCEEEEEEC Q ss_conf -6-------5-52468878606726874306 Q T0608 207 -S-------Y-AELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 207 -~-------i-~~V~~G~~V~~Ge~IG~vG~ 228 (279) . + ..|++||.|++||.|..+=- T Consensus 76 dTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~ 106 (150) T d2f3ga_ 76 DTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 106 (150) T ss_dssp SGGGGTTTTEEECSCTTCEECTTCEEEEECH T ss_pred CHHHCCCCCEEEEECCCCEECCCCEEEEECH T ss_conf 5542488414899568999889999999859 No 4 >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Probab=96.32 E-value=0.0098 Score=39.06 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=67.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC Q ss_conf 55777532785678877876687444420470266798888877876786899975238983599998089769997512 Q T0608 126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL 205 (279) Q Consensus 126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL 205 (279) ..-|..|++.. -..-.+|.+..+-+=.|+-|....|+ |+|+.||+|...- -.+..+.|+..+|..- .-|+ T Consensus 12 i~aP~~G~vi~-L~~V~D~vFs~~~~G~G~aI~P~~~~-----v~AP~~G~I~~i~---~T~HAigi~t~~G~ev-LiHi 81 (158) T d1gpra_ 12 FVSPITGEIHP-ITDVPDQVFSGKMMGDGFAILPSEGI-----VVSPVRGKILNVF---PTKHAIGLQSDGGREI-LIHF 81 (158) T ss_dssp CBCSSSEEEEE-GGGSSSHHHHTTSSCEEEEEEESSCE-----EECSSSEEEEEEC---TTSSEEEEEETTSCEE-EEEC T ss_pred EEECCCCEEEE-HHHCCCHHHCCCCCCCEEEEEECCCE-----EEEEECEEEEEEC---CCCCEEEEEECCCEEE-EEEE T ss_conf 99447867988-01397847555783364999973998-----9982085999983---7997999994897299-9998 Q ss_pred C--C-------C-CCCCCCCEEECCCEEEEEEC-----CCCCC Q ss_conf 6--6-------5-52468878606726874306-----53446 Q T0608 206 D--S-------Y-AELEKGDPVKAGDLLGYMGD-----SGYGE 233 (279) Q Consensus 206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~-----TG~st 233 (279) - . + ..|++||.|++||.|..+=- -|++. T Consensus 82 GiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~ 124 (158) T d1gpra_ 82 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSL 124 (158) T ss_dssp SBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBC T ss_pred EECCCCCCCCCEEEEECCCCEECCCCEEEEECHHHHHHHCCCC T ss_conf 0052014896069998689999689897775899999609997 No 5 >d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]} Probab=96.25 E-value=0.006 Score=40.93 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=43.8 Q ss_pred EE-ECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE Q ss_conf 78-767868999752389835999980897699975-126655246887860672687 Q T0608 169 VV-SMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG 224 (279) Q Consensus 169 V~-A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG 224 (279) || |..+|+|...+.....+..|+|...+|-..-|. ...+.+.|+.||.|++||.|- T Consensus 2 v~~A~~~G~V~~i~~~~~g~~~I~I~~~~G~~~~y~Ip~g~~l~V~eGd~V~aG~~LT 59 (62) T d1ci3m2 2 VYNASAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAALT 59 (62) T ss_dssp CCBCSSCEEEEEEEECTTSCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBSB T ss_pred EEECCCCEEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC T ss_conf 4967108799895862699889999999998999986899987887999995897146 No 6 >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Probab=96.24 E-value=0.0079 Score=39.87 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=66.2 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEC Q ss_conf 55777532785678877876687444420470266798888877876786899975238983599998089769997512 Q T0608 126 SLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHL 205 (279) Q Consensus 126 ~~~p~~g~iss~fg~r~~p~~g~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL 205 (279) ..-|..|.+.. -..-.+|.+..+-+=.|+-|....|+ |+|+.||+|...- ..+..+.|...+|..- .-|+ T Consensus 10 i~aP~~G~vi~-l~~v~D~vFs~k~~G~G~aI~P~~~~-----v~AP~dG~I~~i~---~T~HAigi~t~~G~ei-LIHi 79 (154) T d2gpra_ 10 VLAPCDGTIIT-LDEVEDEVFKERMLGDGFAINPKSND-----FHAPVSGKLVTAF---PTKHAFGIQTKSGVEI-LLHI 79 (154) T ss_dssp EECSSSEEEEC-GGGSSCHHHHTTSSCEEEEEEESSSE-----EECSSCEEEEECC---TTCSEEEEECTTSCEE-EEEC T ss_pred EEECCCCEEEE-CCCCCCHHHCCCCCCCEEEEEECCCE-----EEEECCEEEEEEC---CCCCEEEEEECCCCEE-EEEE T ss_conf 99627736988-11088856556897376999965997-----9985380999987---7896999991899899-9997 Q ss_pred C--C-------C-CCCCCCCEEECCCEEEEEEC-----CCCCC Q ss_conf 6--6-------5-52468878606726874306-----53446 Q T0608 206 D--S-------Y-AELEKGDPVKAGDLLGYMGD-----SGYGE 233 (279) Q Consensus 206 ~--~-------i-~~V~~G~~V~~Ge~IG~vG~-----TG~st 233 (279) . . + ..|++||.|++||+|..+=- -|+++ T Consensus 80 GidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~ 122 (154) T d2gpra_ 80 GLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSI 122 (154) T ss_dssp SSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCC T ss_pred CCCCCCCCCCEEEEEECCCCEECCCCEEEEECHHHHHHCCCCC T ss_conf 6361015883268995489999089999998599998639998 No 7 >d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=95.54 E-value=0.021 Score=36.21 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=41.3 Q ss_pred EE-ECCCCEEEEEEE--CCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE Q ss_conf 78-767868999752--389835999980897699975-126655246887860672687 Q T0608 169 VV-SMTDGVVTEKGW--LEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG 224 (279) Q Consensus 169 V~-A~~dG~V~~a~~--~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG 224 (279) || |.++|+|..... ....+..|+|...+|-..-|. ...+.+.|++||.|++||.|- T Consensus 2 ~~na~~aG~Vs~I~~~~~~kg~~~I~I~~~dGe~~~y~Ip~g~~l~V~eGd~V~~G~~LT 61 (64) T d1e2wa2 2 IYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLT 61 (64) T ss_dssp CCBCSSCEEEEEEEESSSSSCCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBCB T ss_pred EECCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC T ss_conf 664737979987786103689589999999999999974799868888999995897356 No 8 >d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]} Probab=93.30 E-value=0.093 Score=30.65 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=40.9 Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEE-CCCE---EEEEEECCCCCCCCCCCEEECCCEE Q ss_conf 78767868999752389835999980-8976---9997512665524688786067268 Q T0608 169 VVSMTDGVVTEKGWLEKGGWRIGITA-PTGA---YFYYAHLDSYAELEKGDPVKAGDLL 223 (279) Q Consensus 169 V~A~~dG~V~~a~~~~~yGn~ViI~H-g~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~I 223 (279) .-|.+.|+|.........|+-|.|.- .+|- .++=+.. ++ .|++||.|++||.| T Consensus 4 y~AsaaG~I~~I~~~ekGgy~vtI~~~~dg~~v~~~IP~Gp-eL-iVseG~~V~adqpL 60 (63) T d1hcza2 4 YNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGL-EL-LVSEGESIKLDQPL 60 (63) T ss_dssp CBCSSCEEEEEEEECTTSCEEEEEEETTTTEEEEEEECTTC-CB-CCCTTCEECTTCBS T ss_pred ECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCC-EE-EECCCCEEECCCCC T ss_conf 82757879989787688878999986589978888619998-58-98089999779756 No 9 >d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]} Probab=91.95 E-value=0.11 Score=30.18 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=38.5 Q ss_pred EEECCCCEEEEEEEC----CCCCEEEEEEECCCE---EEEEEECCCCCCCCCCCEEECCCEE Q ss_conf 787678689997523----898359999808976---9997512665524688786067268 Q T0608 169 VVSMTDGVVTEKGWL----EKGGWRIGITAPTGA---YFYYAHLDSYAELEKGDPVKAGDLL 223 (279) Q Consensus 169 V~A~~dG~V~~a~~~----~~yGn~ViI~Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~I 223 (279) .-|.+.|+|...-.. ++++..|.|.-.+|- .++=+.. ++ .|++||.|++||.| T Consensus 3 y~AsaaG~Is~I~~~~~~~G~~~~~v~I~t~~G~~v~e~IP~Gp-eL-iVseG~~VkadqpL 62 (66) T d1tu2b2 3 YSAAATGTISKIAKQEGEDGSVKYLVDIKTESGEVVSDTIPAGP-EL-IVSEGQAVTAGDAL 62 (66) T ss_dssp CBCSCCEEEEEEEEEECSSSEEEEEEEEETTTTEEECCEECSSC-CB-SCCTTCEECTTCBS T ss_pred ECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCC-EE-EECCCCEEECCCCC T ss_conf 32757879999861026688527999986599989877518998-68-98289889669866 No 10 >d2pcfb_ i.4.1.1 (B:) Cytochrome f-plastocyanin complex {Plant (Spinacia oleracea) and (Brassica rapa) [TaxId: 3562]} Probab=89.86 E-value=0.46 Score=24.69 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=44.8 Q ss_pred CCEEECCCCEEEEEEECCCCCEEEEEEE-CCCEE---EEEEECCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 8778767868999752389835999980-89769---9975126655246887860672687430653 Q T0608 167 YPVVSMTDGVVTEKGWLEKGGWRIGITA-PTGAY---FYYAHLDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 167 ~PV~A~~dG~V~~a~~~~~yGn~ViI~H-g~G~~---T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) ....|.+.|+|.........|..|.|.. .+|-. ++=+.. ++ .|++||.|++||.|-.==|-| T Consensus 169 ~v~~as~aG~is~I~~~e~gg~~itI~~~~~g~~v~e~iP~Gp-~l-~V~~G~~vka~qpLT~nPNVG 234 (250) T d2pcfb_ 169 TVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGL-EL-LVSEGESIKLDQPLTSNPNVG 234 (250) T ss_dssp SCCBCSSCEEEEEEEECTTSCEEEEEEETTTTEEEEEEECTTC-CB-CCCTTCEECTTCBCBCCCCCC T ss_pred CEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCC-EE-EEECCCEEEECCCCCCCCCCC T ss_conf 1163245407988520678805999986489869998508996-48-971486898378646867836 No 11 >d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Probab=84.20 E-value=0.21 Score=27.57 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=39.8 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEEC Q ss_conf 7787678689997523--------8983599---99808976999751266552468878606726874306 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~ 228 (279) +|+|..+|.|...+.. -|.|... .|||+=|+. + .++.||.|++||+|..+=. T Consensus 7 ~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~--------l-~~k~Gd~V~~Gd~l~~i~~ 69 (103) T d1brwa3 7 TVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIV--------L-HKKIGDRVQKGEALATIHS 69 (103) T ss_dssp EEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTCEEEEEEE T ss_pred EEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEE--------E-ECCCCCEECCCCEEEEEEC T ss_conf 9977999899997089999999984898255667658665559--------9-6268999769994999985 No 12 >d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} SCOP: d1uoua3 Probab=83.91 E-value=0.22 Score=27.40 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=40.5 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 7787678689997523--------8983599---998089769997512665524688786067268743065 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) +|+|..+|.|...+.. -|.|... .|||+=|+. + .++.||+|++||+|..+=.+ T Consensus 7 ~i~A~~~G~i~~ida~~iG~a~~~LGaGR~~~~d~ID~~vGi~--------l-~~k~Gd~V~~G~pl~~i~~~ 70 (103) T d1brwa3 7 TVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIV--------L-HKKIGDRVQKGEALATIHSN 70 (103) T ss_dssp EEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEE--------E-SCCTTCEECTTCEEEEEEES T ss_pred EEECCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCEE--------E-ECCCCCEEECCCEEEEEECC T ss_conf 6535998568874767899999982989777787547321278--------8-81689773078818999839 No 13 >d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Probab=82.11 E-value=0.19 Score=27.94 Aligned_cols=53 Identities=26% Similarity=0.258 Sum_probs=39.3 Q ss_pred CEEECCCCEEEEEEEC--------CCCCEEE---EEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 7787678689997523--------8983599---998089769997512665524688786067268743065 Q T0608 168 PVVSMTDGVVTEKGWL--------EKGGWRI---GITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 168 PV~A~~dG~V~~a~~~--------~~yGn~V---iI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) ||+|..+|.|...+.. -|.|... .|||+=|+ .+ .++.||.|++||+|..+=.. T Consensus 7 ~I~A~~~G~v~~ida~~iG~a~~~LGaGR~~~~D~ID~~vGi--------~l-~~k~Gd~V~~Gd~l~~i~~~ 70 (105) T d2tpta3 7 AVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGF--------TD-MARLGDQVDGQRPLAVIHAK 70 (105) T ss_dssp EECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEE--------ES-CCCTTCEEBTTBCSEEEEES T ss_pred EEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCE--------EE-EECCCCEECCCCEEEEEECC T ss_conf 884699989999727999999998089857677877874428--------99-83588997699959999779 No 14 >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Probab=81.20 E-value=1.6 Score=20.08 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=33.9 Q ss_pred CEEECCCCEEEEEEECCC----CC-EEEEEEECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEE Q ss_conf 778767868999752389----83-5999980897699975126----655246887860672687430 Q T0608 168 PVVSMTDGVVTEKGWLEK----GG-WRIGITAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~~----yG-n~ViI~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG 227 (279) -|.|+-.|+|+..--..| -| ..++|.-..-...+++..+ ++ .|+.||.|..||+|..+| T Consensus 10 ~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i-~v~~G~~V~~G~~L~~ig 77 (77) T d1dcza_ 10 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV-LVKERDAVQGGQGLIKIG 77 (77) T ss_dssp EEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEE-CCCTTCBCCBTSEEEEEC T ss_pred EEECCCCCEEEEEECCCCCEEECCCEEEEEECCCCCEEEEECCCEEEEEE-EECCCCEECCCCEEEEEC T ss_conf 79899895999999679999958976999993675699996789999877-637999989999999939 No 15 >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=80.52 E-value=0.47 Score=24.61 Aligned_cols=25 Identities=32% Similarity=0.190 Sum_probs=13.3 Q ss_pred CCCEEEEEEECCC-CCCCCCCCEEEC Q ss_conf 8976999751266-552468878606 Q T0608 195 PTGAYFYYAHLDS-YAELEKGDPVKA 219 (279) Q Consensus 195 g~G~~T~Y~HL~~-i~~V~~G~~V~~ 219 (279) ..+.+.+++++.. --.+++|++|+. T Consensus 207 ~t~t~~v~~~i~n~~~~L~pGm~v~v 232 (237) T d1vf7a_ 207 GTGSVTIRAVFPNPNNELLPGMFVHA 232 (237) T ss_dssp SSSEEEECBEEECSSSCCCTTCEEEE T ss_pred CCCEEEEEEEEECCCCCCCCCCEEEE T ss_conf 88489999999899996889998999 No 16 >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} SCOP: d3bdoa_ d1a6xa_ d1dd2a_ Probab=74.42 E-value=0.93 Score=22.02 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=10.3 Q ss_pred CCCCCEEECCCEEEEEEC Q ss_conf 468878606726874306 Q T0608 211 LEKGDPVKAGDLLGYMGD 228 (279) Q Consensus 211 V~~G~~V~~Ge~IG~vG~ 228 (279) |++||.|++||+|+.+-+ T Consensus 27 V~~Gd~V~~g~~l~~iEa 44 (80) T d1bdoa_ 27 IEVGQKVNVGDTLCIVEA 44 (80) T ss_dssp CCTTCEECTTCEEEEEEE T ss_pred EECCEEEECCCEEEEEEC T ss_conf 305707730461998932 No 17 >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Probab=73.81 E-value=0.96 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.8 Q ss_pred CCCCCCCCCCCEEECCCEEEEEECCCC Q ss_conf 266552468878606726874306534 Q T0608 205 LDSYAELEKGDPVKAGDLLGYMGDSGY 231 (279) Q Consensus 205 L~~i~~V~~G~~V~~Ge~IG~vG~TG~ 231 (279) +.++ .|++||.|+.|++|+.+...|+ T Consensus 55 v~~i-~v~~Gd~v~~G~~l~~ie~~G~ 80 (80) T d1laba_ 55 VLEI-LVPEGTVATVGQTLITLDAPGY 80 (80) T ss_dssp CCCB-SSCSSSEECSSSCSBCBBCSCC T ss_pred EEEE-EECCCCEECCCCEEEEEECCCC T ss_conf 9999-8589899789999999946869 No 18 >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Probab=73.19 E-value=1 Score=21.60 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=10.2 Q ss_pred CCCCCCEEECCCEEEE Q ss_conf 2468878606726874 Q T0608 210 ELEKGDPVKAGDLLGY 225 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~ 225 (279) .|+.||.|..||+|.. T Consensus 63 ~v~~G~~V~~G~~L~~ 78 (80) T d1bdoa_ 63 LVESGQPVEFDEPLVV 78 (80) T ss_dssp CSCTTCEECTTCEEEE T ss_pred EECCCCEECCCCEEEE T ss_conf 9689799899999999 No 19 >d1vf5c2 b.84.2.2 (C:170-231) Cytochrome f, small domain {Mastigocladus laminosus [TaxId: 83541]} Probab=72.50 E-value=0.13 Score=29.32 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=35.7 Q ss_pred EEECCCCEEEEEEECC----CCCEEEEEEECCCE---EEEEEECCCCCCCCCCCEEECCCEE Q ss_conf 7876786899975238----98359999808976---9997512665524688786067268 Q T0608 169 VVSMTDGVVTEKGWLE----KGGWRIGITAPTGA---YFYYAHLDSYAELEKGDPVKAGDLL 223 (279) Q Consensus 169 V~A~~dG~V~~a~~~~----~yGn~ViI~Hg~G~---~T~Y~HL~~i~~V~~G~~V~~Ge~I 223 (279) .-|.+.|+|....... ..|+-|.|+-.+|- .++=+.. ++ .|++||.|++||.| T Consensus 3 y~AsaaG~Is~I~~~ekg~~~~gy~vtI~t~dG~~v~~~IP~Gp-eL-iVseG~~VkadqpL 62 (62) T d1vf5c2 3 FTASATGTITKIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGP-EL-IVSEGQAVKAGEAL 62 (62) T ss_dssp CCCSSSSCCCBCCCCCCCSSCCCCCCBCCCCSSSCCCCCCCSSS-CC-CCCTTCCCTTSCCC T ss_pred ECCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCC-EE-EECCCCEEECCCCC T ss_conf 22656748889876457876542699998799999887408998-58-97389888579879 No 20 >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Probab=72.46 E-value=1.3 Score=20.70 Aligned_cols=25 Identities=32% Similarity=0.629 Sum_probs=19.7 Q ss_pred CCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 26655246887860672687430653 Q T0608 205 LDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 205 L~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) +.++ .|++||.|..|++|+.+..-| T Consensus 55 v~~i-~v~~Gd~v~~G~~l~~i~~~G 79 (79) T d1ghja_ 55 IAEI-VKNEGDTVLSGELLGKLTEGG 79 (79) T ss_dssp EEEE-SSCTTCEECTTCEEEEECCCC T ss_pred EEEE-ECCCCCEECCCCEEEEEECCC T ss_conf 9999-819999988999999994799 No 21 >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Probab=70.77 E-value=1.4 Score=20.53 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.5 Q ss_pred CCCCCCCCCCCEEECCCEEEEEE Q ss_conf 26655246887860672687430 Q T0608 205 LDSYAELEKGDPVKAGDLLGYMG 227 (279) Q Consensus 205 L~~i~~V~~G~~V~~Ge~IG~vG 227 (279) +.++ .|++||.|+.|++|+.+. T Consensus 56 l~~i-~v~~Gd~v~~G~~l~~i~ 77 (80) T d1pmra_ 56 LDAV-LEDEGTTVTSRQILGRLR 77 (80) T ss_dssp CCBC-TTCTTCEECSSSEEEBCC T ss_pred EEEE-EECCCCEECCCCEEEEEE T ss_conf 9998-768999987999999996 No 22 >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Probab=69.79 E-value=1.4 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=21.4 Q ss_pred ECCCCCCCCCCCEEECCCEEEEEECCCC Q ss_conf 1266552468878606726874306534 Q T0608 204 HLDSYAELEKGDPVKAGDLLGYMGDSGY 231 (279) Q Consensus 204 HL~~i~~V~~G~~V~~Ge~IG~vG~TG~ 231 (279) -+.++ .|++||.|+.||+|+.+-.+|- T Consensus 54 ~i~~i-~v~~G~~v~~G~~l~~ie~~g~ 80 (81) T d1gjxa_ 54 VVKEV-KVKVGDKISEGGLIVVVEAEGT 80 (81) T ss_dssp BBCCC-CCCSSCEECSSSCCCEECCSCC T ss_pred EEEEE-EECCCCEECCCCEEEEEECCCC T ss_conf 99999-8089899889999999944657 No 23 >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Probab=68.54 E-value=1.6 Score=19.97 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=19.5 Q ss_pred CCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 6655246887860672687430653 Q T0608 206 DSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 206 ~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) .++ .|++||.|+.||+|+.+-..| T Consensus 55 ~~i-~v~~G~~V~~G~~l~~ie~eg 78 (80) T d1qjoa_ 55 KEL-KVNVGDKVKTGSLIMIFEVEG 78 (80) T ss_dssp EEC-CCCTTCEECTTCCCEEEESCC T ss_pred EEE-EECCCCEECCCCEEEEEECCC T ss_conf 999-828999988999999996575 No 24 >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Probab=65.45 E-value=2 Score=19.24 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=20.7 Q ss_pred CCCCCCCCCCC-EEECCCEEEEEECCCCC Q ss_conf 26655246887-86067268743065344 Q T0608 205 LDSYAELEKGD-PVKAGDLLGYMGDSGYG 232 (279) Q Consensus 205 L~~i~~V~~G~-~V~~Ge~IG~vG~TG~s 232 (279) |.++ .+++|+ .|.-|++|+.++..+-. T Consensus 59 l~~i-~v~eGd~~v~vG~~ia~i~~~~~~ 86 (102) T d1y8ob1 59 LAKI-LVPEGTRDVPLGTPLCIIVEKEAD 86 (102) T ss_dssp EEEE-SSCTTCCSEETTCEEEEEESSGGG T ss_pred EEEE-EECCCCEEECCCCEEEEEECCCCC T ss_conf 9998-974699797499989999557766 No 25 >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Probab=64.15 E-value=1.6 Score=19.95 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=19.0 Q ss_pred CCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 6655246887860672687430653 Q T0608 206 DSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 206 ~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) .++ .|++||.|+.|++|+.....+ T Consensus 59 ~~i-~v~~G~~v~~G~~l~~i~~~~ 82 (87) T d1k8ma_ 59 KKL-YYNLDDIAYVGKPLVDIETEA 82 (87) T ss_dssp EEE-CCCSSCEECTTSEEEEEECSC T ss_pred EEE-EECCCCEECCCCEEEEEECCC T ss_conf 999-858999978999999997677 No 26 >d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Probab=63.47 E-value=2.1 Score=18.88 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=37.5 Q ss_pred CEEECCCCEEEEEEECC--------CCCE-EEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECC Q ss_conf 77876786899975238--------9835-99998089769997512665524688786067268743065 Q T0608 168 PVVSMTDGVVTEKGWLE--------KGGW-RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDS 229 (279) Q Consensus 168 PV~A~~dG~V~~a~~~~--------~yGn-~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~T 229 (279) +|+|..+|.|...+... |.|. .=.|||+=|+. + .++.||.|++||+|..+=.. T Consensus 7 ~i~A~~~G~V~~id~~~lG~~~~~LGaGR~~d~ID~~vGi~--------l-~~k~Gd~V~~G~~l~~ih~~ 68 (105) T d1uoua3 7 ELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAE--------L-LVDVGQRLRRGTPWLRVHRD 68 (105) T ss_dssp EEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEE--------E-CSCTTCEECTTCEEEEEEES T ss_pred EEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCEE--------E-EECCCCEECCCCEEEEEECC T ss_conf 99669997999971799999999967898777637555579--------9-60588998699939999889 No 27 >d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Probab=58.50 E-value=4.4 Score=16.20 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=30.8 Q ss_pred CCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHH Q ss_conf 98359999808976999751266552468878606726874306534467777888972258999817888632170899 Q T0608 185 KGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPV 264 (279) Q Consensus 185 ~yGn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~ 264 (279) --|++++++-.+| .++..||- . . |.+.. .+.+|.|+.+.+++.. T Consensus 49 RrGK~l~~~l~~~-~~l~~HLg-M-t---G~~~~--------------------~~~kh~~~~~~~d~~~---------- 92 (121) T d1ee8a2 49 RRGKFLLFALEGG-VELVAHLG-M-T---GGFRL--------------------EPTPHTRAALVLEGRT---------- 92 (121) T ss_dssp EETTEEEEEETTT-EEEEEECT-T-T---CEEES--------------------SCCTTEEEEEEESSCE---------- T ss_pred EEEEEEEEEECCC-CEEEECCC-C-C---EEEEE--------------------ECCCCCEEEEEECCCE---------- T ss_conf 6549999994896-38986000-0-5---06764--------------------0367606999966988---------- Q ss_pred HHHHHCCCEEE Q ss_conf 98862287677 Q T0608 265 LRYAENARIKC 275 (279) Q Consensus 265 l~~~~~~~~~~ 275 (279) |.|.++|+--+ T Consensus 93 L~f~D~RrFG~ 103 (121) T d1ee8a2 93 LYFHDPRRFGR 103 (121) T ss_dssp EEEECTTCCCE T ss_pred EEEECCCCCCE T ss_conf 99978888748 No 28 >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Probab=58.46 E-value=4.4 Score=16.20 Aligned_cols=55 Identities=24% Similarity=0.184 Sum_probs=35.2 Q ss_pred CCEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEE-ECCCCCCCCCCCEEECCCEEE Q ss_conf 8778767868999752389835999980897699975-126655246887860672687 Q T0608 167 YPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYA-HLDSYAELEKGDPVKAGDLLG 224 (279) Q Consensus 167 ~PV~A~~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~-HL~~i~~V~~G~~V~~Ge~IG 224 (279) .||.+-.+|+|.+.... -...|+|+... +.-.|- ...+.+.|+.||.|++||.|. T Consensus 1270 ~~iisei~g~v~i~~~~--~~~~v~i~~~~-~~~~~~ip~~~~l~V~~gd~V~~g~~l~ 1325 (1504) T d1smyd_ 1270 KAVISEIDGVVRIEETE--EKLSVFVESEG-FSKEYKLPKEARLLVKDGDYVEAGQPLT 1325 (1504) T ss_dssp BCCBCSSCEEEEECCCS--SCCCEEEECSS-CEEEECCCTTCCCCCCTTCEECTTCBCS T ss_pred CCEEEEECCEEEEEECC--CEEEEEECCCC-EEEEEECCCCCEEEEECCCEEECCCEEC T ss_conf 86488625669998547--71699985798-0799984899868974899994698721 No 29 >d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=49.72 E-value=5.1 Score=15.64 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.6 Q ss_pred CCCCCCEEECCCEEEEE Q ss_conf 24688786067268743 Q T0608 210 ELEKGDPVKAGDLLGYM 226 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~v 226 (279) .++.|+.|++||+|+.+ T Consensus 76 ~~~DG~~v~~G~~I~~i 92 (115) T d1qpoa2 76 RVEDGARVPPGEALMTL 92 (115) T ss_dssp ECCTTCEECTTCEEEEE T ss_pred ECCCCCEEECCEEEEEE T ss_conf 04787887224049998 No 30 >d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=48.78 E-value=5.7 Score=15.23 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=15.1 Q ss_pred CCCCCCEEECCCEEEEE Q ss_conf 24688786067268743 Q T0608 210 ELEKGDPVKAGDLLGYM 226 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~v 226 (279) .++.|+.|++|++|..+ T Consensus 64 ~~~dG~~v~~g~~I~~i 80 (103) T d1o4ua2 64 NVEDGEYLEGTGVIGEI 80 (103) T ss_dssp SCCTTCEEESCEEEEEE T ss_pred ECCCCCEEECCCEEEEE T ss_conf 53779987759459999 No 31 >d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=48.39 E-value=5.6 Score=15.27 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=14.9 Q ss_pred CCCCCCEEECCCEEEEE Q ss_conf 24688786067268743 Q T0608 210 ELEKGDPVKAGDLLGYM 226 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~v 226 (279) .++.|+.|++|++|+.+ T Consensus 83 ~~~DG~~v~~G~~i~~i 99 (122) T d1qapa2 83 HVDDGDAIHANQTVFEL 99 (122) T ss_dssp SCCTTCEECTTCEEEEE T ss_pred CCCCCCEEECCCEEEEE T ss_conf 24673278648469999 No 32 >d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=47.42 E-value=6.2 Score=14.94 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=15.2 Q ss_pred CCCCCCEEECCCEEEEE Q ss_conf 24688786067268743 Q T0608 210 ELEKGDPVKAGDLLGYM 226 (279) Q Consensus 210 ~V~~G~~V~~Ge~IG~v 226 (279) .++.|+.|++|++|+.+ T Consensus 64 ~~~dG~~v~~g~~i~~i 80 (103) T d1o4ua2 64 NVEDGEYLEGTGVIGEI 80 (103) T ss_dssp SCCTTCEEESCEEEEEE T ss_pred EECCCCCCCCCCEEEEE T ss_conf 72477400279779999 No 33 >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Probab=47.04 E-value=5.6 Score=15.32 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=9.8 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCEEEC Q ss_conf 9999808976999751266552468878606 Q T0608 189 RIGITAPTGAYFYYAHLDSYAELEKGDPVKA 219 (279) Q Consensus 189 ~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~ 219 (279) +|+|.|.-... ..+++++-.+.|..|.. T Consensus 191 vi~itH~l~~~---~~~D~i~vl~~G~Iv~~ 218 (241) T d2pmka1 191 VIIIAHRLSTV---KNADRIIVMEKGKIVEQ 218 (241) T ss_dssp EEEECSSGGGG---TTSSEEEEEETTEEEEE T ss_pred EEEEECCHHHH---HHCCEEEEEECCEEEEE T ss_conf 99997889999---84999999989999998 No 34 >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=44.94 E-value=6.5 Score=14.76 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=5.7 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |+-..+|+|+..| T Consensus 220 v~vl~~G~Iv~~G 232 (253) T d3b60a1 220 IVVVEDGIIVERG 232 (253) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999988 No 35 >d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId: 562]} Probab=43.41 E-value=6 Score=15.05 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=31.6 Q ss_pred EECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEE Q ss_conf 6067268743065344677778889722589998178886321708999886228767731 Q T0608 217 VKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVY 277 (279) Q Consensus 217 V~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~~~~~~~~ 277 (279) ....|.+|+.|+....++--=. --.||+||.+ ||.-.+-..+++-|+|+. T Consensus 209 ~~~~qfvGy~g~~~~p~~ill~--nn~LHiei~i---------d~~~~iG~~d~agi~Di~ 258 (720) T d1d8ca_ 209 RTPAQFVGYRGDAAAPTCILLK--NNGLHIELQI---------DANGRIGKDDPAHINDVI 258 (720) T ss_dssp SSGGGEEEEESCTTSCSEEEEE--ETTEEEEEEE---------CTTSTTGGGCTTCEEEEE T ss_pred CCCCCEEEEECCCCCCCEEEEE--ECCEEEEEEE---------CCCCCCCCCCCCCCHHEE T ss_conf 2502179981466665103477--6877999997---------578832357866512114 No 36 >d1v8qa_ b.84.4.1 (A:) TT0826 {Thermus thermophilus [TaxId: 274]} SCOP: d1p86u_ Probab=43.30 E-value=7 Score=14.48 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=18.2 Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 4444204702667988888778767868999752 Q T0608 149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) .++|.|.-.......+ ++|..+|+|.|... T Consensus 24 tk~~pG~nVg~GkD~T----LfA~~~G~V~F~~~ 53 (66) T d1v8qa_ 24 TRFKPGKNVGMGRDFT----LFALVDGVVEFQDR 53 (66) T ss_dssp CSSEECTTEEECTTCC----EEESSSEEEEEEEC T ss_pred CEEECCCCCEECCCCE----EEEEECCEEEEEEE T ss_conf 5750689615279854----75500787877882 No 37 >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Probab=43.16 E-value=7.2 Score=14.37 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=23.9 Q ss_pred EECCCEEEEEEECC----CCCCCCCCCEEECCCEEEEEECCC Q ss_conf 80897699975126----655246887860672687430653 Q T0608 193 TAPTGAYFYYAHLD----SYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 193 ~Hg~G~~T~Y~HL~----~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) .-..-...+.+..+ ++ .|++||.|..||+|+.+.-++ T Consensus 36 E~~K~~~~i~a~~~G~v~~i-~v~~G~~V~~G~~l~~ie~~~ 76 (79) T d1iyua_ 36 ESAKASMEVPSPKAGVVKSV-SVKLGDKLKEGDAIIELEPAA 76 (79) T ss_dssp ECSSCEEEEECSSSSEEEEE-SCCTTCEEETTSEEEEEECCC T ss_pred EECCCEEEEEECCCCEEEEE-EECCCCEECCCCEEEEEECCC T ss_conf 93671789980366489998-508989988999999994676 No 38 >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=42.73 E-value=7 Score=14.44 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=6.8 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |+-..+|.|+.-+ T Consensus 215 v~~m~~G~Iv~~g 227 (230) T d1l2ta_ 215 IIYLKDGEVEREE 227 (230) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999952 No 39 >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Probab=41.15 E-value=7.4 Score=14.23 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=6.2 Q ss_pred CCCCCCCCCCCEEECC Q ss_conf 2665524688786067 Q T0608 205 LDSYAELEKGDPVKAG 220 (279) Q Consensus 205 L~~i~~V~~G~~V~~G 220 (279) +++++-.+.|..|..| T Consensus 218 aDrI~vl~~G~iv~~G 233 (251) T d1jj7a_ 218 ADHILFLEGGAIREGG 233 (251) T ss_dssp CSEEEEEETTEEEEEE T ss_pred CCEEEEEECCEEEEEC T ss_conf 9999999899999988 No 40 >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Probab=40.96 E-value=6.1 Score=14.96 Aligned_cols=31 Identities=13% Similarity=0.017 Sum_probs=16.5 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCEEECCC Q ss_conf 999980897699975126655246887860672 Q T0608 189 RIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD 221 (279) Q Consensus 189 ~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge 221 (279) .|++.|.-.....|+ ++++-.+.|..|..|. T Consensus 185 ii~vtHdl~~~~~~~--dri~vl~~G~iv~~G~ 215 (231) T d1l7vc_ 185 IVMSSHDLNHTLRHA--HRAWLLKGGKMLASGR 215 (231) T ss_dssp EEECCCCHHHHHHHC--SBCCBEETTEECCCSB T ss_pred EEEEECCHHHHHHHC--CEEEEEECCEEEEECC T ss_conf 999967799999979--9999997998999889 No 41 >d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]} Probab=40.61 E-value=7.8 Score=14.07 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=18.5 Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 4444204702667988888778767868999752 Q T0608 149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) .++|.|.-.......+ ++|..+|+|.|... T Consensus 24 tk~~pG~nVg~GkD~T----LfAl~~G~V~F~~~ 53 (66) T d1v8qa_ 24 TRFKPGKNVGMGRDFT----LFALVDGVVEFQDR 53 (66) T ss_dssp CSSEECTTEEECTTCC----EEESSSEEEEEEEC T ss_pred CEEECCCCEEECCCCC----EEEEEEEEEEEEEE T ss_conf 7080878750657881----99961269999891 No 42 >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Probab=40.33 E-value=7.8 Score=14.05 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=7.9 Q ss_pred EEECCCCEEEEEEE Q ss_conf 78767868999752 Q T0608 169 VVSMTDGVVTEKGW 182 (279) Q Consensus 169 V~A~~dG~V~~a~~ 182 (279) |+...+|+|+..|. T Consensus 222 ii~l~~G~iv~~G~ 235 (255) T d2hyda1 222 IVVIENGHIVETGT 235 (255) T ss_dssp EEEEETTEEEEEEC T ss_pred EEEEECCEEEEECC T ss_conf 99998999999889 No 43 >d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]} Probab=39.91 E-value=7.9 Score=13.99 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=19.2 Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCEEEEEEE Q ss_conf 4444204702667988888778767868999752 Q T0608 149 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 182 (279) Q Consensus 149 ~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~~ 182 (279) .++|.|.-.......+ ++|..||+|.|... T Consensus 42 tk~hpG~nVg~GkD~T----LfA~~~G~V~F~k~ 71 (84) T d2zjrt1 42 TKFKAGQGVGMGRDHT----LFALSDGKVVFINK 71 (84) T ss_dssp SSSEECTTEECCTTSC----EEESSCEEEEEEEE T ss_pred CEECCCCCCCCCCCCC----EEEEECEEEEEEEC T ss_conf 6172878723368886----88850339999895 No 44 >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=39.08 E-value=8.1 Score=13.89 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=14.4 Q ss_pred CEEEEEEECCCEEEEEEECCCCCCCCCCCEEECC Q ss_conf 3599998089769997512665524688786067 Q T0608 187 GWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAG 220 (279) Q Consensus 187 Gn~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~G 220 (279) ..+|+|.|.-. .+ ..+++++-.+.|..|..| T Consensus 209 ~tvi~itH~~~--~l-~~aDrI~vl~~G~i~~~G 239 (281) T d1r0wa_ 209 KTRILVTSKME--HL-RKADKILILHQGSSYFYG 239 (281) T ss_dssp SEEEEECSCHH--HH-HTCSEEEEEETTEEEEEE T ss_pred CEEEEEECHHH--HH-HHCCEEEEEECCEEEEEC T ss_conf 99999925289--99-859999999899999987 No 45 >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Probab=37.28 E-value=8.6 Score=13.68 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=6.0 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+|+..| T Consensus 219 i~vm~~G~iv~~g 231 (258) T d1b0ua_ 219 VIFLHQGKIEEEG 231 (258) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999799999984 No 46 >d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]} Probab=36.71 E-value=8.8 Score=13.61 Aligned_cols=33 Identities=15% Similarity=-0.041 Sum_probs=21.3 Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCC Q ss_conf 786899975238983599998089769997512665 Q T0608 173 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY 208 (279) Q Consensus 173 ~dG~V~~a~~~~~yGn~ViI~Hg~G~~T~Y~HL~~i 208 (279) .-|+|..=....||| +|.-++ |-.-++-|.+.+ T Consensus 9 ~~G~VKwfn~~KGfG-FI~~dd--g~~DvFvH~s~i 41 (79) T d1h95a_ 9 VLGTVKWFNVRNGYG-FINRND--TKEDVFVHQTAI 41 (79) T ss_dssp EEEEEEEEETTTTEE-EEEEGG--GTEEEEEEGGGB T ss_pred CCEEEEEECCCCCEE-EEEECC--CCCCEEEEHHHC T ss_conf 557999981999969-998789--986489991671 No 47 >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=36.60 E-value=8.8 Score=13.61 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=6.8 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+++..| T Consensus 211 i~vm~~G~iv~~g 223 (242) T d1oxxk2 211 VGVLVKGKLVQVG 223 (242) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999986 No 48 >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Probab=35.26 E-value=9.2 Score=13.44 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=6.7 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|.++..| T Consensus 210 v~vm~~G~iv~~G 222 (240) T d1g2912 210 IAVMNRGVLQQVG 222 (240) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999985 No 49 >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Probab=34.90 E-value=9.3 Score=13.40 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=18.2 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCCEEECCC Q ss_conf 5999980897699975126655246887860672 Q T0608 188 WRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGD 221 (279) Q Consensus 188 n~ViI~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge 221 (279) -+|+|.|.-... .++++++-.+.|..|..|. T Consensus 190 Tvi~itH~l~~~---~~~D~i~vl~~G~iv~~G~ 220 (242) T d1mv5a_ 190 TTLVIAHRLSTI---VDADKIYFIEKGQITGSGK 220 (242) T ss_dssp EEEEECCSHHHH---HHCSEEEEEETTEECCCSC T ss_pred EEEEEECCHHHH---HHCCEEEEEECCEEEEECC T ss_conf 899997879999---8499999998999999999 No 50 >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Probab=32.44 E-value=10 Score=13.10 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.5 Q ss_pred EEECCCCEEEEEEE Q ss_conf 78767868999752 Q T0608 169 VVSMTDGVVTEKGW 182 (279) Q Consensus 169 V~A~~dG~V~~a~~ 182 (279) |....+|.|+..|. T Consensus 211 i~vl~~G~iv~~G~ 224 (240) T d3dhwc1 211 VAVISNGELIEQDT 224 (240) T ss_dssp EEEEETTEEEEEEE T ss_pred EEEEECCEEEEECC T ss_conf 99997999999879 No 51 >d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1 {Cow (Bos taurus) [TaxId: 9913]} Probab=31.67 E-value=10 Score=13.00 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=31.8 Q ss_pred EEECCCCEEEEEEE-CCCCCEEEEEEECCCEEEEEEECCC----------CCCCCCCCEEEC Q ss_conf 78767868999752-3898359999808976999751266----------552468878606 Q T0608 169 VVSMTDGVVTEKGW-LEKGGWRIGITAPTGAYFYYAHLDS----------YAELEKGDPVKA 219 (279) Q Consensus 169 V~A~~dG~V~~a~~-~~~yGn~ViI~Hg~G~~T~Y~HL~~----------i~~V~~G~~V~~ 219 (279) |.+++||++...|- +-.+|-+|...++. .-+=.+|.+ -..+++||.|++ T Consensus 8 V~~VgDGIA~V~GL~~a~~~Elv~F~~g~--~GlalnL~e~~VgvVllg~~~~i~eG~~V~r 67 (71) T d2jdia2 8 VLSIGDGIARVHGLRNVQAEEMVEFSSGL--KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKR 67 (71) T ss_dssp EEEEETTEEEEEECTTCBTTCEEEETTSC--EEEEEEECSSCEEEEESSCGGGCCTTCEEEC T ss_pred EEEECCCEEEEECCCCCCCCCEEEECCCC--EEEEEEECCCEEEEEEECCCCCCCCCCEEEE T ss_conf 99975868999788545569989989998--9999960366899999989986288999880 No 52 >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=30.17 E-value=10 Score=13.07 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=7.8 Q ss_pred EEEEEEECCCCCCCCCCHHHHH Q ss_conf 2589998178886321708999 Q T0608 244 LHLGIYLKEGTEEISVNPYPVL 265 (279) Q Consensus 244 LHfei~~~~~~~~~~vnP~~~l 265 (279) -|+|.++-+-. .|||-.| T Consensus 254 ~riE~R~~da~----aNPYL~l 271 (368) T d1f52a2 254 RRIEVRFPDPA----ANPYLCF 271 (368) T ss_dssp CCEEECCCCTT----SCHHHHH T ss_pred CEEEECCCCCC----HHHHHHH T ss_conf 24784478801----7778999 No 53 >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=29.90 E-value=11 Score=12.78 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=6.2 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |.-..+|+++..| T Consensus 201 i~vm~~G~iv~~G 213 (232) T d2awna2 201 IVVLDAGRVAQVG 213 (232) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEE T ss_conf 9999799999980 No 54 >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Probab=29.63 E-value=11 Score=12.74 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=3.9 Q ss_pred CCCCCEEECC Q ss_conf 4688786067 Q T0608 211 LEKGDPVKAG 220 (279) Q Consensus 211 V~~G~~V~~G 220 (279) .+.|+.|..| T Consensus 201 m~~G~iv~~g 210 (229) T d3d31a2 201 VMDGKLIQVG 210 (229) T ss_dssp ESSSCEEEEE T ss_pred EECCEEEEEC T ss_conf 9799999986 No 55 >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=29.24 E-value=11 Score=12.69 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=4.2 Q ss_pred EEECCCCEEEEE Q ss_conf 787678689997 Q T0608 169 VVSMTDGVVTEK 180 (279) Q Consensus 169 V~A~~dG~V~~a 180 (279) |....+|+++.. T Consensus 207 i~vm~~G~iv~~ 218 (239) T d1v43a3 207 IAVMNRGQLLQI 218 (239) T ss_dssp EEEEETTEEEEE T ss_pred EEEEECCEEEEE T ss_conf 999989999998 No 56 >d1h8eb2 b.49.1.1 (B:24-94) F1 ATP synthase alpha subunit, domain 1 {Cow (Bos taurus) [TaxId: 9913]} SCOP: d1h8ea2 d1maba2 d1skyb2 d1fx0a2 Probab=28.20 E-value=12 Score=12.55 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=33.4 Q ss_pred CCCCCCCCCEEECCCCEEEEEEE-CCCCCEEEEEEECCCEEEEEEECCC----------CCCCCCCCEEEC Q ss_conf 67988888778767868999752-3898359999808976999751266----------552468878606 Q T0608 160 EKNTPGYYPVVSMTDGVVTEKGW-LEKGGWRIGITAPTGAYFYYAHLDS----------YAELEKGDPVKA 219 (279) Q Consensus 160 ~~GT~~~~PV~A~~dG~V~~a~~-~~~yGn~ViI~Hg~G~~T~Y~HL~~----------i~~V~~G~~V~~ 219 (279) ..|+ |.+++||++...|- +-.+|-+|...++ ..-+=.+|.+ ...+++|+.|++ T Consensus 4 e~G~-----V~~vgDGIA~V~GL~~v~~gElv~F~~g--~~G~alnLeed~VGvvllg~~~~i~eG~~V~r 67 (71) T d1h8eb2 4 ETGR-----VLSIGDGIARVHGLRNVQAEEMVEFSSG--LKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKR 67 (71) T ss_dssp TEEE-----EEEEETTEEEEEECTTCBTTEEEEETTS--CEEEEEEECSSCEEEEESSCGGGCCTTCEEEE T ss_pred CCEE-----EEECCCCEEEEECCCCCCCCCEEECCCC--CEEEEEECCCCCEEEEEECCCCCCCCCCEEEE T ss_conf 3268-----9870498898870698771315885899--68999753867147989579998403868888 No 57 >d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Probab=27.81 E-value=12 Score=12.50 Aligned_cols=13 Identities=8% Similarity=0.406 Sum_probs=10.0 Q ss_pred CCCEEEEEEECCC Q ss_conf 9722589998178 Q T0608 241 PVHLHLGIYLKEG 253 (279) Q Consensus 241 g~HLHfei~~~~~ 253 (279) .||+||.|...|. T Consensus 123 ~~HIH~~V~~~g~ 135 (200) T d3pcca_ 123 APHINISLFARGI 135 (200) T ss_dssp CSEEEEEEECTTC T ss_pred CCEEEEEEEECCE T ss_conf 8878899981880 No 58 >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Probab=27.35 E-value=12 Score=12.44 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=5.0 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |.-..+|.|+..| T Consensus 203 v~vl~~G~iv~~g 215 (238) T d1vpla_ 203 IALIHNGTIVETG 215 (238) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999992 No 59 >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Probab=26.74 E-value=12 Score=12.36 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=5.3 Q ss_pred EEECCCCEEEEEE Q ss_conf 7876786899975 Q T0608 169 VVSMTDGVVTEKG 181 (279) Q Consensus 169 V~A~~dG~V~~a~ 181 (279) |....+|+|+..| T Consensus 209 v~vl~~G~iv~~g 221 (240) T d1ji0a_ 209 GYVLETGQIVLEG 221 (240) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999984 No 60 >d1mzya2 b.6.1.3 (A:194-371) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Probab=26.36 E-value=12 Score=12.31 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=12.1 Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEC Q ss_conf 787678689997523898359999808 Q T0608 169 VVSMTDGVVTEKGWLEKGGWRIGITAP 195 (279) Q Consensus 169 V~A~~dG~V~~a~~~~~yGn~ViI~Hg 195 (279) |-+...|.|.+. ..-=|.+..++|. T Consensus 122 v~~G~a~~~~~t--f~~PG~Y~~VdH~ 146 (178) T d1mzya2 122 IRGGTAGAALYK--FLQPGVYAYVNHN 146 (178) T ss_dssp BCTTEEEEEEEE--CCSCEEEEEEESS T ss_pred ECCCCEEEEEEE--ECCCEEEEEECCH T ss_conf 469850589998--1798388887638 No 61 >d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]} Probab=26.35 E-value=12 Score=12.31 Aligned_cols=18 Identities=33% Similarity=0.780 Sum_probs=8.9 Q ss_pred CCCCCEE--ECCCEEEEEEC Q ss_conf 4688786--06726874306 Q T0608 211 LEKGDPV--KAGDLLGYMGD 228 (279) Q Consensus 211 V~~G~~V--~~Ge~IG~vG~ 228 (279) =..|..+ +.|++||+-|| T Consensus 116 GtSGSPIin~~G~vVGLYGN 135 (150) T d2fomb1 116 GTSGSPIVDKKGKVVGLYGN 135 (150) T ss_dssp GGTTCEEECTTSCEEEETTC T ss_pred CCCCCCEECCCCCEEEEECC T ss_conf 99998648789979999546 No 62 >d1qz8a_ b.140.1.1 (A:) Replicase NSP9 {SARS coronavirus [TaxId: 227859]} SCOP: d1uw7a_ d1qz8b_ Probab=25.44 E-value=5.2 Score=15.54 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=30.0 Q ss_pred EEEECCCCCE-EEE----------EEECCCEEEEEEECCCCCCCCCCCEEECCCEEEEEECCC Q ss_conf 9752389835-999----------980897699975126655246887860672687430653 Q T0608 179 EKGWLEKGGW-RIG----------ITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDSG 230 (279) Q Consensus 179 ~a~~~~~yGn-~Vi----------I~Hg~G~~T~Y~HL~~i~~V~~G~~V~~Ge~IG~vG~TG 230 (279) ++.|....|| +|. |+-.+|-...|-.. ||.=....||.++|+.|+|= T Consensus 51 ~~K~e~~~G~~~I~iELePPckF~v~~p~Gp~vkYLYF-----VKnln~L~RG~VLG~i~aTV 108 (111) T d1qz8a_ 51 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYF-----IKGLNNLNRGMVLGSLAATV 108 (111) T ss_dssp EEEEECSSSSCEEEEEBCCCEEEEECCTTCCEEEEEEE-----BTTCCHHHHHHHHHHHHHHS T ss_pred EEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEE-----ECCCCCHHHHEEEEEEEEEE T ss_conf 99987479980798874688257876699856999997-----40766201000256314577 No 63 >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=23.93 E-value=14 Score=11.96 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=5.0 Q ss_pred EEECCCCEEEEE Q ss_conf 787678689997 Q T0608 169 VVSMTDGVVTEK 180 (279) Q Consensus 169 V~A~~dG~V~~a 180 (279) |....+|+|+.. T Consensus 220 v~vm~~G~iv~~ 231 (254) T d1g6ha_ 220 LYVMFNGQIIAE 231 (254) T ss_dssp EEEEETTEEEEE T ss_pred EEEEECCEEEEE T ss_conf 999969989999 No 64 >d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Probab=23.61 E-value=14 Score=11.92 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=14.1 Q ss_pred CCCCEEECCCEEEEEECCCCCC Q ss_conf 6887860672687430653446 Q T0608 212 EKGDPVKAGDLLGYMGDSGYGE 233 (279) Q Consensus 212 ~~G~~V~~Ge~IG~vG~TG~st 233 (279) ++|+.|++|+.+|.+=+..... T Consensus 45 ~~g~~v~~g~~~~~iEs~k~~~ 66 (131) T d1hpca_ 45 EPGVSVTKGKGFGAVESVKATS 66 (131) T ss_dssp CTTCEECBTSEEEEEEESSCEE T ss_pred CCCCCCCCCCCEEEEEEECCCC T ss_conf 9976301797158998503343 No 65 >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} SCOP: d1f52a2 Probab=23.03 E-value=14 Score=11.83 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=7.9 Q ss_pred CCCEEEEEEECC Q ss_conf 972258999817 Q T0608 241 PVHLHLGIYLKE 252 (279) Q Consensus 241 g~HLHfei~~~~ 252 (279) |.|+|+.+|-.+ T Consensus 170 G~H~H~Sl~~~~ 181 (374) T d2bvca2 170 GMHCHQSLWKDG 181 (374) T ss_dssp CEEEEEEEEETT T ss_pred HHEEEEHHHHCC T ss_conf 110110122225 No 66 >d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis [TaxId: 1773]} Probab=22.84 E-value=14 Score=11.80 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=30.1 Q ss_pred ECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEE Q ss_conf 067268743065344677778889722589998178886321708999886228767731 Q T0608 218 KAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVY 277 (279) Q Consensus 218 ~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~~~~~~~~ 277 (279) ...|.+|+.|+.-..++--=. --.||+||.+ ||..-+-..+++-|+|+. T Consensus 212 ~~~qf~G~~g~~~~p~~ill~--~n~LHiei~i---------d~~~~iG~~d~Agi~Di~ 260 (726) T d1n8ia_ 212 NPGQFAGYTGAAESPTSVLLI--NHGLHIEILI---------DPESQVGTTDRAGVKDVI 260 (726) T ss_dssp SGGGEEEEEEETTEEEEEEEE--ETTEEEEEEE---------CTTSTTGGGSTTCEEEEE T ss_pred CHHHEEEECCCCCCHHHHHHH--HCCCEEEEEE---------CCCCCCCCCCCCCCHHEE T ss_conf 856815332776530558998--6881799998---------778653456867640101 No 67 >d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]} Probab=22.46 E-value=7.5 Score=14.21 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=19.0 Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEE Q ss_conf 7444420470266798888877876786899975 Q T0608 148 GKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKG 181 (279) Q Consensus 148 ~~~~H~GiDiaa~~GT~~~~PV~A~~dG~V~~a~ 181 (279) ..++|.|.-.......+ ++|..+|+|.|.. T Consensus 41 Gtk~hPG~nVg~GkD~T----LfAl~~G~V~F~~ 70 (84) T d2gycu1 41 GTKFHAGANVGCGRDHT----LFAKADGKVKFEV 70 (84) T ss_dssp CCSSCCCCCSSSCCCCC----CCCCSCCCCSSSS T ss_pred CCEECCCCCEEECCCCE----EEEECCEEEEEEE T ss_conf 66072878740567880----9883167999878 No 68 >d1p7ta_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId: 562]} SCOP: d1d8ca_ d1y8ba_ d1p7tb_ d2gq3b1 d1n8wa_ d1n8ia_ d1n8wb_ Probab=22.23 E-value=15 Score=11.71 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=30.9 Q ss_pred ECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEE Q ss_conf 067268743065344677778889722589998178886321708999886228767731 Q T0608 218 KAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVY 277 (279) Q Consensus 218 ~~Ge~IG~vG~TG~st~~~~~~~g~HLHfei~~~~~~~~~~vnP~~~l~~~~~~~~~~~~ 277 (279) ...|.+|+.|+....++--=. --.||+||.+ ||...+-..+++-|+|+. T Consensus 209 ~~~qfvGy~g~~~~p~~ill~--nn~LHiei~i---------D~~~~iG~~D~Agi~Di~ 257 (719) T d1p7ta_ 209 TPAQFVGYRGDAAAPTCILLK--NNGLHIELQI---------DANGRIGKDDPAHINDVI 257 (719) T ss_dssp SGGGEEEEEEETTEEEEEEEE--ETTEEEEEEE---------CTTSTTGGGCTTCEEEEE T ss_pred CCCCEEEECCCCCCCCEEEEE--ECCCEEEEEE---------CCCCCCCCCCCCCCHHEE T ss_conf 711045302671286478664--0894899997---------488885766666500024 No 69 >d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=21.47 E-value=12 Score=12.30 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=41.2 Q ss_pred EEEEEECCCEEEEEEECCCCC--CCCCCCEEECCCEEEEEECC--CCCCCCCCCCCCCCEEEEEEECC Q ss_conf 999980897699975126655--24688786067268743065--34467777888972258999817 Q T0608 189 RIGITAPTGAYFYYAHLDSYA--ELEKGDPVKAGDLLGYMGDS--GYGEEGTTGEFPVHLHLGIYLKE 252 (279) Q Consensus 189 ~ViI~Hg~G~~T~Y~HL~~i~--~V~~G~~V~~Ge~IG~vG~T--G~st~~~~~~~g~HLHfei~~~~ 252 (279) ..+|.--||++++-+.|+.-+ .|+.| .+.-||.|...|.. |....-+|-+.-.-+++.|+.|+ T Consensus 48 ~~~lelTDGWYsi~a~lD~~L~~~l~~g-rl~vGqKL~i~GA~L~g~~~~~sPLE~~~s~~L~i~~Ns 114 (133) T d1iyjb3 48 VDTIELTDGWYAVKAQLDPPLLALVKSG-RLTVGQKIITQGAELVGSPDACAPLEAPDSLRLKISANS 114 (133) T ss_dssp CCCEEEECSSCEEEECCCHHHHHHHHHT-CSCTTCEEEESCCEEESCCSCCCGGGCCSSCEEECCTTT T ss_pred CCEEEEECCCEEEEEECCHHHHHHHHCC-CCCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEECC T ss_conf 3669995487788898198999999829-951362489988686527898585426676589995042 No 70 >d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Probab=20.32 E-value=16 Score=11.42 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=10.2 Q ss_pred CCCEEEEEEECCC Q ss_conf 9722589998178 Q T0608 241 PVHLHLGIYLKEG 253 (279) Q Consensus 241 g~HLHfei~~~~~ 253 (279) .||+||-|+..|- T Consensus 125 p~HIH~~V~~~g~ 137 (202) T d2bura1 125 APHISLIIFARGI 137 (202) T ss_dssp CSCEEEEEECTTC T ss_pred CCEEEEEEEECCC T ss_conf 9869999996980 No 71 >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=20.19 E-value=16 Score=11.39 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=8.1 Q ss_pred CCCEEEEEEECC Q ss_conf 972258999817 Q T0608 241 PVHLHLGIYLKE 252 (279) Q Consensus 241 g~HLHfei~~~~ 252 (279) |.|+|+.+|-++ T Consensus 170 g~H~h~Sl~~~~ 181 (374) T d2bvca2 170 GMHCHQSLWKDG 181 (374) T ss_dssp CEEEEEEEEETT T ss_pred CEEEEEEECCCC T ss_conf 600799741589 No 72 >d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Probab=20.03 E-value=16 Score=11.37 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=32.0 Q ss_pred EEECCCCEEEEEEE-CCCCCEEEEEEECCCEEEEEEECCC----------CCCCCCCCEEEC Q ss_conf 78767868999752-3898359999808976999751266----------552468878606 Q T0608 169 VVSMTDGVVTEKGW-LEKGGWRIGITAPTGAYFYYAHLDS----------YAELEKGDPVKA 219 (279) Q Consensus 169 V~A~~dG~V~~a~~-~~~yGn~ViI~Hg~G~~T~Y~HL~~----------i~~V~~G~~V~~ 219 (279) |.+++||++...|- +-.+|-+|...++. .-+=.+|.+ -..+++||.|++ T Consensus 8 V~~VgDGIa~V~GL~~~~~~Elv~F~~g~--~G~alnLe~d~VgvVllg~~~~i~~G~~V~r 67 (72) T d1fx0a2 8 VLQVGDGIARIHGLDEVMAGELVEFEEGT--IGIALNLESNNVGVVLMGDGLMIQEGSSVKA 67 (72) T ss_dssp ECCCCSSEEEEEECTTCCTTCCEEETTCC--EEEEEEECSSEEEEEECSCGGGCCTTCEEEC T ss_pred EEEECCCEEEEECCCCCCCCCEEEECCCC--EEEEEECCCCEEEEEEECCCCCCCCCCEEEE T ss_conf 99964768999687413459879908999--6999723477899999989986178999983 Done!