Query T0609 NP_347334.1, CLOSTRIDIUM ACETOBUTYLICUM, 340 residues Match_columns 340 No_of_seqs 133 out of 2509 Neff 9.3 Searched_HMMs 22458 Date Mon Jul 5 09:03:59 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0609.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0609.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1z45_A GAL10 bifunctional prot 100.0 0 0 336.4 31.5 309 12-337 368-698 (699) 2 1nsx_A Galactose mutarotase; e 100.0 0 0 333.8 30.0 307 6-338 1-337 (347) 3 3dcd_A Galactose mutarotase re 100.0 0 0 329.3 30.2 289 19-339 2-293 (307) 4 1lur_A Aldose 1-epimerase; vit 100.0 0 0 329.2 29.3 300 16-340 11-338 (339) 5 1yga_A Hypothetical 37.9 kDa p 100.0 0 0 324.6 28.6 312 15-338 8-341 (342) 6 3k25_A SLR1438 protein; struct 100.0 0 0 322.0 30.4 272 19-338 13-287 (289) 7 3imh_A Galactose-1-epimerase; 100.0 0 0 317.6 31.1 291 15-339 16-331 (338) 8 1snz_A Aldose 1-epimerase; mut 100.0 0 0 309.2 32.9 299 16-337 20-341 (344) 9 2cir_A Hexose-6-phosphate muta 100.0 4.2E-45 0 278.0 16.4 267 15-340 8-291 (297) 10 2hta_A Putative enzyme related 100.0 2.7E-41 1.4E-45 256.3 23.9 259 12-339 36-308 (309) 11 1jov_A HI1317; hypothetical pr 100.0 9.5E-37 4.2E-41 229.9 23.5 244 11-336 15-269 (270) 12 3bs6_A Inner membrane protein 96.8 0.016 7.2E-07 31.4 12.8 130 17-179 3-135 (280) 13 3blc_A Inner membrane protein 96.3 0.037 1.7E-06 29.3 12.5 126 17-180 34-167 (330) 14 1k1x_A 4-alpha-glucanotransfer 92.4 0.38 1.7E-05 23.4 11.3 152 8-175 389-568 (659) 15 1ejx_B Urease beta subunit; al 62.3 3.9 0.00017 17.6 2.6 30 156-187 13-42 (101) 16 3mi6_A Alpha-galactosidase; NE 60.4 6 0.00027 16.5 12.6 42 149-190 144-187 (745) 17 1yew_A Particulate methane mon 59.8 6.2 0.00027 16.4 4.0 15 322-336 321-335 (382) 18 4ubp_B Protein (urease (chain 52.8 5 0.00022 17.0 1.8 30 156-187 19-48 (126) 19 3isy_A Bsupi, intracellular pr 41.1 12 0.00055 14.7 4.6 34 149-182 6-39 (120) 20 1e9y_A Urease alpha subunit; h 40.6 13 0.00056 14.6 2.6 40 146-187 107-147 (238) 21 3chx_A PMOB; membrane protein, 29.6 7.8 0.00035 15.9 -0.2 12 323-334 327-338 (392) 22 2kl8_A OR15; structural genomi 23.8 25 0.0011 12.9 2.8 17 152-168 31-47 (85) No 1 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Probab=100.00 E-value=0 Score=336.36 Aligned_cols=309 Identities=17% Similarity=0.209 Sum_probs=245.3 Q ss_pred EECCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCC-CCCCCCEEECCCCCEECCCEEEE Q ss_conf 52088689999879-84999950148689999998898599963588443300027-63211347736886200886887 Q T0609 12 IIWSEHKCIRFAAG-GYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKN-RPQVYGLPVLFPPNRIDDGTFKL 89 (340) Q Consensus 12 ~~~~g~~~v~l~n~-~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~G~pi~~p~~Ri~~g~f~~ 89 (340) .+....++|||+|+ +++|+|+ ++||+|++|+..+ .++++.+ +..++|.. ++.++|+.|+|+||||++|+|++ T Consensus 368 ~~~~~~~~~t~~n~~~~~v~~~-~~Ga~i~~~~~~~--~~vvlg~---~~~~~y~~~~~~y~Ga~iGr~anRI~~g~~~~ 441 (699) T 1z45_A 368 DMRYDARFVTIGAGTRFQATFA-NLGASIVDLKVNG--QSVVLGY---ENEEGYLNPDSAYIGATIGRYANRISKGKFSL 441 (699) T ss_dssp TTCTTSEEEEESTTSSEEEEEE-SBTTCEEEEEETT--EECBCCC---SSHHHHTCTTCCCTTCEECSBCSEEGGGEEEE T ss_pred CCCCCEEEEEEECCCCEEEEEE-ECCCEEEEECCCC--CEEEECC---CCHHHHCCCCCCEECCCCCCCCCEEECCEEEE T ss_conf 5763127999944873699998-1685999967199--7888379---99899707899741867557668686889999 Q ss_pred CCEEEEECCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEE--CCEEE Q ss_conf 9978992356887766675665---775359997113678748999999678986213488459999999980--41899 Q T0609 90 GDKTYKFPINEAKNNNYIHGFI---KNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELS--SKGLK 164 (340) Q Consensus 90 ~g~~y~l~~n~~~~~~~~HG~~---~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~--~~~L~ 164 (340) +|++|+|++|++ .+++||+. ..+.|....... .+...++++|.+.+ +++-.||||+++++++|+|+ ++.|+ T Consensus 442 ~g~~y~l~~N~~--~~~lHGg~~g~~~~~w~~~~~~~-~~~~~~~~~~~~~~-~~~~~G~PG~l~~~v~y~l~~~~~~l~ 517 (699) T 1z45_A 442 CNKDYQLTVNNG--VNANHSSIGSFHRKRFLGPIIQN-PSKDVFTAEYMLID-NEKDTEFPGDLLVTIQYTVNVAQKSLE 517 (699) T ss_dssp TTEEEECCCCBT--TBEETTGGGCGGGSBCEEEEEEE-EETTEEEEEEEEEE-CGGGSSSSSEEEEEEEEEEETTTTEEE T ss_pred CCEEEEECCCCC--CCCCCCCCCCCCCEEEEEEEEEE-CCCCEEEEEEEEEC-CCCCCCCCCEEEEEEEEEEECCCCCEE T ss_conf 999999278999--98778998888854886777750-78866999999888-988899880789999999966999179 Q ss_pred EEEEEEECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC Q ss_conf 9999994887031000013624760477776324505887034178627765667742377886233366774346--55 Q T0609 165 QTTSVVNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVA--SH 242 (340) Q Consensus 165 i~~~v~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~--~~ 242 (340) +.++.++.+++++|+++++|+|||+.+..+.++.+|.|++++..++++|+.+||||++.++.++.+|+.... .++ .. T Consensus 518 i~~~~~~~~d~~t~~n~tnH~YfNL~g~~~~~i~~h~l~i~a~~~~~~d~~~iPtG~~~~v~~t~~d~~~~~-~i~~~~~ 596 (699) T 1z45_A 518 IVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPT-VLGPKNP 596 (699) T ss_dssp EEEEEEEEESSEEECBCEECCEECTTTTSCSSSTTEEEEESCCEEEEECTTSCEEEEEEECSCCBTTSSSCE-EECSSCC T ss_pred EEEEEEECCCCCEEEECCCCCEECCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCE-ECCCCCC T ss_conf 999997057752365514644172378877542442998467849740787775887040679998788860-3576688 Q ss_pred CCCCEEECCCCC-------CCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC------CCCCEEEEECCCCCCCCC Q ss_conf 324012045423-------4886632799971899839999985998868996488------668839994155888888 Q T0609 243 PIESLFSLKDID-------VNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM------GDKKYACIEPQTSIINSP 309 (340) Q Consensus 243 ~~D~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~------g~~~~vciEP~t~~pda~ 309 (340) .+|++|...... ........+.+.++.+|+.|++.+++ |.+|+||.. ..+..||||||. +|||+ T Consensus 597 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~l~v~t~~--p~~~~yt~n~~~~~~~~~~g~~lE~q~-~pda~ 673 (699) T 1z45_A 597 QFDCCFVVDENAKPSQINTLNNELTLIVKAFHPDSNITLEVLSTE--PTYQFYTGDFLSAGYEARQGFAIEPGR-YIDAI 673 (699) T ss_dssp CCEEEEESCSSCCCCCSBCTTSCCEEEEEEEETTTTEEEEEEESS--SEEEEECCTTCCTTCCTTSCEEEEEES-CSSGG T ss_pred CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCEEEEECCC-CCCCC T ss_conf 987228867987643334667872499999908989889999689--769996899889887998889982689-98866 Q ss_pred CCCCCCCCCCCEEECCCCEEEEEEEEEE Q ss_conf 8888776257689698977999999999 Q T0609 310 NVKLDRSVSGFKTLKPNESWSGVCKLYI 337 (340) Q Consensus 310 n~~~~~~~~g~~~L~pGe~~~~~~~~~v 337 (340) |++++++. ++|+|||++...+.+.+ T Consensus 674 n~~~f~~~---i~l~~g~~y~~~t~y~F 698 (699) T 1z45_A 674 NQENWKDC---VTLKNGETYGSKIVYRF 698 (699) T ss_dssp GCTTTGGG---GEEETTCEEEEEEEEEE T ss_pred CCCCCCCC---EECCCCCEEEEEEEEEE T ss_conf 78689986---55399598988999997 No 2 >1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Probab=100.00 E-value=0 Score=333.83 Aligned_cols=307 Identities=14% Similarity=0.159 Sum_probs=237.1 Q ss_pred EEEEEEEECCCEEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECC Q ss_conf 027523520886899998798-4999950148689999998898599963588443300027632113477368862008 Q T0609 6 LWIKEEIIWSEHKCIRFAAGG-YEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDD 84 (340) Q Consensus 6 ~~~~~~~~~~g~~~v~l~n~~-~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~ 84 (340) |=|+-+...++.++|||+|+. ++++|+ ++||+|++++.. +.++++.++ ..++|..++.+.|+.|+|+||||++ T Consensus 1 m~i~~~~~g~~~~~~tL~N~~g~~v~i~-~~GA~i~~~~~~--~~~vvlg~~---~~~~y~~~~~~~Ga~iGr~anRI~~ 74 (347) T 1nsx_A 1 MSIKIRDFGLGSDLISLTNKAGVTISFT-NLGARIVDWQKD--GKHLILGFD---SAKEYLEKDAYPGATVGPTAGRIKD 74 (347) T ss_dssp -CEEEEEEETTEEEEEEECTTSCEEEEE-TBTTEEEEEEET--TEESBCCCS---SHHHHHHTCSCTTCEECSBCSEEGG T ss_pred CCEEEECCCCCCEEEEEECCCCCEEEEE-CCCEEEEEECCC--CCEEEECCC---CHHHHHHCCCCCCCEECCCCCCCCC T ss_conf 9437701798426999995998399997-988699970369--975896699---9899831788527571451671138 Q ss_pred CEEEECCEEEEECCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC Q ss_conf 868879978992356887766675665---77535999711367874899999967898621348845999999998041 Q T0609 85 GTFKLGDKTYKFPINEAKNNNYIHGFI---KNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK 161 (340) Q Consensus 85 g~f~~~g~~y~l~~n~~~~~~~~HG~~---~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~ 161 (340) |+|+++|+.|+|++|++ ++++||+. ..+.|++.... +.+..+|++++...+.+ .+||++++++++|+|+++ T Consensus 75 g~f~~~G~~y~L~~Ne~--~~~lHGG~~g~~~~~w~~~~~~-~~~~~~v~~~~~~~dg~---~GyPg~~~~~vtY~L~~~ 148 (347) T 1nsx_A 75 GLVKISGKDYILNQNEG--PQTLHGGEESIHTKLWTYEVTD-LGAEVQVKFSLVSNDGT---NGYPGKIEMSVTHSFDDD 148 (347) T ss_dssp GEEEETTEEEECCCCBT--TBEETTSTTCGGGSBCEEEEEE-CSSEEEEEEEEEECTTG---GGCCSCEEEEEEEEEETT T ss_pred CEEEECCEEEEECCCCC--CCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEEEEECCCC---CCCCEEEEEEEEEEECCC T ss_conf 80408998999147889--8755788655576002467652-78843899999968987---887578999999996459 Q ss_pred -EEEEEEEEEECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -899999999488703100001362476047777632450588703417862-776566774237788623336677434 Q T0609 162 -GLKQTTSVVNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQ-DSRNLPTGESFAPTGEQKEYLENGVAV 239 (340) Q Consensus 162 -~L~i~~~v~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~-d~~~lptg~~~~~~~~~~~~~~~~~~~ 239 (340) .|+++++ |.+++++|+++++|+|||+++....++.+++|++++.+++++ |+..||||++.++.++.+||....... T Consensus 149 ~~l~i~~~--a~s~~~tp~nlt~H~YFnL~g~~~~~i~~h~L~i~a~~~l~~~D~~~iPtG~~~~v~~t~~Dfr~~~~i~ 226 (347) T 1nsx_A 149 NKWKIHYE--AISDKDTVFNPTGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLS 226 (347) T ss_dssp SEEEEEEE--EEESSCEECBCEECCEECTTSSTTSCGGGSEEEECEEEECCBCSTTCCBCSCCEECTTSTTCCSSCEEHH T ss_pred CEEEEEEE--EECCCCEEEECCCCCCEECCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 84899999--7437754764065250644775567520079998037589962788776782554779986566772845 Q ss_pred C-----------CCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC-------------CCCC Q ss_conf 6-----------553240120454234886632799971899839999985998868996488-------------6688 Q T0609 240 A-----------SHPIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM-------------GDKK 295 (340) Q Consensus 240 ~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-------------g~~~ 295 (340) . ...+|++|.+..... ....+.+.. ++++|++..+ .|.+++||.. .... T Consensus 227 ~~~~~~~~~~~~~~G~D~~f~l~~~~~---~~~~~~l~~--~~~~l~v~T~--~p~~qvYT~n~l~~~~~~~~~~~~~~~ 299 (347) T 1nsx_A 227 NAFNSNMEQVQLVKGIDHPFLLDQLGL---DKEQARLTL--DDTSISVFTD--QPSIVIFTANFGDLGTLYHEKKQVHHG 299 (347) T ss_dssp HHHHCCCHHHHHHTSCEEEEEESSCBT---TSCCEEEEE--TTEEEEEEES--SSEEEEECCCCTTCCCEETTEECCTTC T ss_pred HHHHCCHHHHCCCCCCCCCEEECCCCC---CCCEEEEEE--CCCEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 424120244113578886347456778---730389974--8960899938--997999907767765567887678778 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEE Q ss_conf 3999415588888888887762576896989779999999998 Q T0609 296 YACIEPQTSIINSPNVKLDRSVSGFKTLKPNESWSGVCKLYIE 338 (340) Q Consensus 296 ~vciEP~t~~pda~n~~~~~~~~g~~~L~pGe~~~~~~~~~ve 338 (340) .|||||| .+|||+|++++++ ++|+|||++..++.+++. T Consensus 300 giclEpq-~~Pda~N~~~f~~----i~L~pge~y~~~t~Y~f~ 337 (347) T 1nsx_A 300 GITFECQ-VSPGSEQIPELGD----ISLKAGEKYQATTIYSLH 337 (347) T ss_dssp CEECEEE-SCTTTTTCGGGCC----CEECTTCEEEEEEEEEEE T ss_pred EEEEECC-CCCCCCCCCCCCC----EEECCCCEEEEEEEEEEE T ss_conf 9999557-8998657778998----089999999889999999 No 3 >3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Probab=100.00 E-value=0 Score=329.30 Aligned_cols=289 Identities=19% Similarity=0.305 Sum_probs=219.3 Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEEEEEC Q ss_conf 999987984999950148689999998898599963588443300027632113477368-8620088688799789923 Q T0609 19 CIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKTYKFP 97 (340) Q Consensus 19 ~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~y~l~ 97 (340) .++|+|+.++|+|+ ++||+|+||+++..+.++|+..+... ..++.|+||| +|||++|+|.++|+.|+++ T Consensus 2 ~~tleN~~l~v~v~-~~Ga~l~s~~~~~~~~e~L~~~~~~~---------~~~~~p~l~P~~gRi~~g~~~~~g~~~~l~ 71 (307) T 3dcd_A 2 DYTIENNMIKVVIS-DHGAEIQSVKSAHTDEEFMWQANPEI---------WGRHAPVLFPIVGRLKNDEYTYKGKTYHLG 71 (307) T ss_dssp EEEEECSSEEEEEE-TBTTEEEEEEETTTCCBCBCCCCTTT---------CCCSSCEEBSCSSCCGGGEEEETTEEEECC T ss_pred EEEEECCCEEEEEE-CCCCEEEEEEECCCCEEEEECCCHHH---------HCCCCCEEEEECCCCCCCEEEECCCEEEEC T ss_conf 89999699999997-56979999997999968897388688---------378996899882641899076779798566 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCHHH Q ss_conf 56887766675665775359997113678748999999678986213488459999999980418999999994887031 Q T0609 98 INEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSEEM 177 (340) Q Consensus 98 ~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~~~ 177 (340) +|||+|+++|++.+.+++ +++ +.+..++++..+|||+++++++|+|++++|+++++++|.+++++ T Consensus 72 ---------~HG~~~~~~w~v~~~~~~----~~~--l~l~~~~~~~~~~P~~~~l~~~~~L~~~~L~i~~~v~N~~~~~~ 136 (307) T 3dcd_A 72 ---------QHGFARNADFEVENHTKE----SIT--FLLKDNEETRKVYPFKFEFRVNYNLMNNLLEENFSVVNKSDETM 136 (307) T ss_dssp ---------TTBSGGGSBCEEEEEETT----EEE--EEEECCHHHHHHSCCCEEEEEEEEEETTEEEEEEEEEECSSSCE T ss_pred ---------CCCCCCCCCEEEEECCCC----EEE--EEECCCHHHHCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCE T ss_conf ---------679957852699982798----179--99704824620599876999999962564899999993888637 Q ss_pred EECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 00001362476047777632450588703417862776566774237788623336677434655324012045423488 Q T0609 178 PLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLKDIDVNG 257 (340) Q Consensus 178 p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 257 (340) ||++++||||++++..+....++.+.... ....+...+|++..........+.. ....+....+++...... .. T Consensus 137 p~~~g~HpYF~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~---~~ 210 (307) T 3dcd_A 137 IFGVGGHPGFNLPTDHGENKEDFYFDMHP--SVTRVRIPLKDASLDWNNRSLAPTD-SLIALSDDLFKDDALIYE---LR 210 (307) T ss_dssp EECEEECCEEECCCTTSCCGGGEEEEEES--CCCEEECCEETTEECGGGCEEECTT-SCEECCSGGGTTSCEEEE---CC T ss_pred EEEEECCEEEECCCCCCCEEEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCEEEEE---CC T ss_conf 88405240585586557200038998145--6521211368773035667305667-604414543256549994---48 Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC-CCCEEEEECCCCCCCCCCCCCC-CCCCCCEEECCCCEEEEEEEE Q ss_conf 66327999718998399999859988689964886-6883999415588888888887-762576896989779999999 Q T0609 258 KTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMG-DKKYACIEPQTSIINSPNVKLD-RSVSGFKTLKPNESWSGVCKL 335 (340) Q Consensus 258 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g-~~~~vciEP~t~~pda~n~~~~-~~~~g~~~L~pGe~~~~~~~~ 335 (340) .....+.+.++..+..+.+... +++++++|++.. .++||||||||++|||+|.+.. .++.|++.|+|||+++.+++| T Consensus 211 ~~~~~~~l~~~~~~~~l~~~~~-~~p~~~vwt~~~~~~~~vcvEP~t~~~da~n~~~~~~~~~g~~~L~pge~~~~~~~i 289 (307) T 3dcd_A 211 GNDNKVSLRTDKNKFHVNVWTR-DAPFVGIWSQYPKTDNYVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSM 289 (307) T ss_dssp SSCEEEEEEETTSSCEEEEEEE-TCSEEEEECCSSSCCSEEEEEEEESCCCBTTCCSBGGGCTTCEEECTTCEEEEEEEE T ss_pred CCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEE T ss_conf 9861899996899829999848-999799989999999899991447899856773200127798898999999999999 Q ss_pred EEEE Q ss_conf 9985 Q T0609 336 YIEN 339 (340) Q Consensus 336 ~ve~ 339 (340) ++++ T Consensus 290 t~~~ 293 (307) T 3dcd_A 290 TYHS 293 (307) T ss_dssp EEEC T ss_pred EEEC T ss_conf 9986 No 4 >1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Probab=100.00 E-value=0 Score=329.19 Aligned_cols=300 Identities=15% Similarity=0.212 Sum_probs=236.4 Q ss_pred CEEEEEEECCC-EEEEEECCCCCEEEEEEECCCC---EEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECC Q ss_conf 86899998798-4999950148689999998898---5999635884433000276321134773688620088688799 Q T0609 16 EHKCIRFAAGG-YEALIIPDVGGNVVELKDTNKG---VTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGD 91 (340) Q Consensus 16 g~~~v~l~n~~-~~~~i~p~~Ga~i~sl~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g 91 (340) +-.+|+|+|+. ++|+|+ ++||+|.+|++..+. .++++.++ ..++|..++.++|+.|+|+||||++|+|+++| T Consensus 11 ~~~~i~l~N~~g~~v~i~-~~GA~i~~~~vpd~~G~~~~vvlg~~---~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G 86 (339) T 1lur_A 11 ASGFIEIANKQGLTATLL-PFGATLAKLTFPDKNGKNQDLVLGFD---TIDEFEKDAASIGKTVGRVANRIKNSTLHFDG 86 (339) T ss_dssp CCCCEEEECSSSCEEEEE-TBTTEEEEEEEECTTSCEEECBCCCS---SHHHHHHCSSCTTCEECSBCSEEGGGEEEETT T ss_pred CCCEEEEECCCCCEEEEE-CCCCEEEEEEEECCCCCEEEEEECCC---CHHHHHHCCCCCCCEECCCCCEEECCEEEECC T ss_conf 575699996999599998-96929999998888898814288899---98999538886065887736857898898999 Q ss_pred EEEEECCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC-EEEEEE Q ss_conf 78992356887766675665---77535999711367874899999967898621348845999999998041-899999 Q T0609 92 KTYKFPINEAKNNNYIHGFI---KNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK-GLKQTT 167 (340) Q Consensus 92 ~~y~l~~n~~~~~~~~HG~~---~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~-~L~i~~ 167 (340) ++|+|++|++ ++++||+. +.+.|++++... .+|++++...+. -.+||+++.++++|+|+++ .|.+++ T Consensus 87 ~~y~L~~Ne~--~n~lHGg~~g~~~~~W~v~~~~~----~~v~l~~~~~~g---~~GyPg~l~~~vtY~L~~~~~l~i~~ 157 (339) T 1lur_A 87 KQYTMTPNNG--PHYLHGGPNGLGYRKWEVVRHAP----ESVSFSVRANEQ---DDGLPGDAKIDVTYTVNDRNQLIIEH 157 (339) T ss_dssp EEEECCCSBT--TBEETTCTTSGGGSBCEEEEEET----TEEEEEEEEEHH---HHSSSSEEEEEEEEEECTTSEEEEEE T ss_pred EEEEECCCCC--CCCCCCCCCCCCEECCEEEEECC----CCEEEEEECCCC---CCCCCCEEEEEEEEEECCCCEEEEEE T ss_conf 9999148999--85558887763135211477058----722999981787---67877448999999965698699999 Q ss_pred EEEECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----- Q ss_conf 999488703100001362476047777632450588703417862776566774237788623336677434655----- Q T0609 168 SVVNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASH----- 242 (340) Q Consensus 168 ~v~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~----- 242 (340) +. .+++++|+++++|+|||++. ..++.++.|++++++++++|++.||||++..+.++.+||... ..+... T Consensus 158 ~a--~~d~~tp~nlt~H~YFNL~g--~~~i~~h~L~i~a~~~l~~D~~~iPtG~~~~v~~t~~Dfr~~-~~l~~~~~d~~ 232 (339) T 1lur_A 158 HA--TCDTPGLLALTNHAYWNLDG--SDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSG-KQLKESGKDAE 232 (339) T ss_dssp EE--ECSSCEECBCEECCEECSSC--CSCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTC-EETTCSCCCSS T ss_pred EE--ECCCCCEEEECCCCCCCCCC--CCCCCCEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCC T ss_conf 97--55987057851544132578--877677399986685887585552067546346887655586-30575322434 Q ss_pred ---CCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC------------CCCCEEEEECCCCCCC Q ss_conf ---3240120454234886632799971899839999985998868996488------------6688399941558888 Q T0609 243 ---PIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM------------GDKKYACIEPQTSIIN 307 (340) Q Consensus 243 ---~~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~------------g~~~~vciEP~t~~pd 307 (340) ..|++|..............+.+.++.+|++|.+..+ .|.+++|+.. ..+..||||||+ +|| T Consensus 233 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~sg~~l~v~t~--~p~~qvYT~n~l~~~~~~g~~~~~~~gi~lEpq~-~Pd 309 (339) T 1lur_A 233 ELLDLDNDLVITKKTPPSTPSTYLRFWSEKSGIELSITTS--YPVIHLYASKFLDCKGKKGEHYKANKALAIEPQF-HSA 309 (339) T ss_dssp CCCCCEEEEEECCCCC----CCCEEEECTTTCEEEEEEES--SSEEEEECCTTCCEECGGGCEECTTCCEEEEEES-CTT T ss_pred EEEECCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECC--CCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC-CCC T ss_conf 0360278679843789877516999963998859999679--9889996898777778788796888889995469-998 Q ss_pred CCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEC Q ss_conf 888888776257689698977999999999859 Q T0609 308 SPNVKLDRSVSGFKTLKPNESWSGVCKLYIENM 340 (340) Q Consensus 308 a~n~~~~~~~~g~~~L~pGe~~~~~~~~~ve~~ 340 (340) |+|++++++ ++|+|||+++.++.+++.++ T Consensus 310 A~N~~~f~~----~iL~pge~y~~~t~Y~Fs~~ 338 (339) T 1lur_A 310 APNFDHFPD----VSLRPGDHYCQEIVYTFSHV 338 (339) T ss_dssp GGGCTTSCC----CEECTTCCEEEEEEEEEEEC T ss_pred CCCCCCCCC----EEECCCCEEEEEEEEEEECC T ss_conf 556778998----08999999988999998717 No 5 >1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Probab=100.00 E-value=0 Score=324.63 Aligned_cols=312 Identities=16% Similarity=0.185 Sum_probs=236.0 Q ss_pred CCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCEE Q ss_conf 88689999879-84999950148689999998898599963588443300027632113477368862008868879978 Q T0609 15 SEHKCIRFAAG-GYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKT 93 (340) Q Consensus 15 ~g~~~v~l~n~-~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~~ 93 (340) +.++.|||+|+ +++|+|+ .+||.|++|+++ +.++++.++ ..+.|..++.++|+.|+|+||||++|+|+++|++ T Consensus 8 ~~~~~itl~n~~~~~~~i~-~~GA~i~~l~~~--~~~vvlg~~---~~~~Y~~~~~~~Ga~iGr~ANRI~~g~f~~~G~~ 81 (342) T 1yga_A 8 NKYGVITIGDEKKFQATIA-PLGATLVDLKVN--GQSVVQGYS---NVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGP 81 (342) T ss_dssp CTTCCEEEEETTTEEEEEE-TBTTEEEEEEET--TEECBCCCS---SGGGGTTCSSCTTCEECSBCSEEGGGEEEETTEE T ss_pred CEEEEEEEECCCCEEEEEE-CCCEEEEEEEEC--CEEEEECCC---CHHHHHCCCCCCCCEECCCCCEEECCEEEECCEE T ss_conf 6599999978996699998-779099999999--958894799---9899811898165284455574768899999999 Q ss_pred EEECCCCCCCCCCCCCCCC-CCCEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEC--CEEEEEEEE Q ss_conf 9923568877666756657-75359997113-6787489999996789862134884599999999804--189999999 Q T0609 94 YKFPINEAKNNNYIHGFIK-NSKWTVHKKKI-DQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSS--KGLKQTTSV 169 (340) Q Consensus 94 y~l~~n~~~~~~~~HG~~~-~~~W~v~~~~~-~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~--~~L~i~~~v 169 (340) |||++|++.+.+|.|+..+ .+.|.+..... +....++++++....++++.++||++++++++|+|++ .+|++++++ T Consensus 82 y~L~~Ne~~~~lhgg~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~GfPg~~~~~v~y~L~~~~~~L~i~~~~ 161 (342) T 1yga_A 82 HKLTVNNCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQA 161 (342) T ss_dssp EECCCCBTTBEETTGGGCGGGSBCEECCCEEEETTEEEEEEEEEECSSSSSCCCSSSEEEEEEEEEEETTTTEEEEEEEE T ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE T ss_conf 99267889873442469977268889996427874599999993046788657821689999999992267623789999 Q ss_pred EECCCHHHEECCCCCCEEECCCCC-CCCCCCEEEEEECCCEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC Q ss_conf 948870310000136247604777-763245058870341786277-656677423778862333667743465-53240 Q T0609 170 VNLSSEEMPLSVGYHSAFNVPFIE-GSEDSNCRVKISIDKFWKQDS-RNLPTGESFAPTGEQKEYLENGVAVAS-HPIES 246 (340) Q Consensus 170 ~N~~~~~~p~~~~~H~YF~~~~~~-~~~~~~~~l~~~~~~~~~~d~-~~lptg~~~~~~~~~~~~~~~~~~~~~-~~~D~ 246 (340) +|.+++++|+++++|+|||+++.. ...+.++.|++++.+++++++ ..+|||+...+....+++......... ..+|+ T Consensus 162 ~n~~~~~tp~nlt~H~YFnL~g~~~~~~i~~~~l~~~a~~~~~~~d~~~~ptg~~~~~~~t~fd~~~~~~~~~~~~~~~~ 241 (342) T 1yga_A 162 QLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLHEDTPVFDC 241 (342) T ss_dssp EEEESSEEECBCEECCCBCTTTTTCTTCCTTEEEEESCCEEEEECTTTCCEEEEEEECSCCBTTCSSCEEECSSCCCCEE T ss_pred ECCCCCCCEEEECCCCEECCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 63668774688336445855676655750125899815848980576788742143014764223464102222221101 Q ss_pred EEECCC------CC--CCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC------CCCCEEEEECCCCCCCCCCCC Q ss_conf 120454------23--4886632799971899839999985998868996488------668839994155888888888 Q T0609 247 LFSLKD------ID--VNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM------GDKKYACIEPQTSIINSPNVK 312 (340) Q Consensus 247 ~~~~~~------~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~------g~~~~vciEP~t~~pda~n~~ 312 (340) .+.... .. .......++.+.++.+|++|.+..++ |.+|+||.. ..+.+||||||+ +|||+|++ T Consensus 242 ~~~~d~~~~~~~~~~~~~~~~~~~a~l~~~~sg~~l~v~t~~--p~~qvYT~n~l~~~~~~~~giclEpq~-~pda~N~~ 318 (342) T 1yga_A 242 TFIIDANKDLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTE--PTVHLYTGDNLCGKFVPRSGFAVQQGR-YVDAINRD 318 (342) T ss_dssp EEECTTTTTCCSSBCTTTSCCEEEEEEECTTTCCEEEEEESS--SEEEEECCTTCCTTSCTTSCBEEEEES-CSSGGGCH T ss_pred CEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC--CEEEEECCCCCCCCCCCCCEEEEECCC-CCCCCCCC T ss_conf 352148866431336676763589999948998099999289--989998288789976897799997998-98976674 Q ss_pred CCCCCCCCEEECCCCEEEEEEEEEEE Q ss_conf 87762576896989779999999998 Q T0609 313 LDRSVSGFKTLKPNESWSGVCKLYIE 338 (340) Q Consensus 313 ~~~~~~g~~~L~pGe~~~~~~~~~ve 338 (340) .++ ++++|+|||+++.++++.++ T Consensus 319 ~~~---~~i~L~pge~y~~~t~y~F~ 341 (342) T 1yga_A 319 EWR---GCVLLKRGEVYTSKTQYKFD 341 (342) T ss_dssp HHH---GGGEEETTCCEEEEEEEEEE T ss_pred CCC---CCEEECCCCEEEEEEEEEEE T ss_conf 799---98588998989889999997 No 6 >3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Probab=100.00 E-value=0 Score=322.01 Aligned_cols=272 Identities=21% Similarity=0.389 Sum_probs=210.3 Q ss_pred EEEEECC--CEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEEEE Q ss_conf 9999879--84999950148689999998898599963588443300027632113477368-86200886887997899 Q T0609 19 CIRFAAG--GYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKTYK 95 (340) Q Consensus 19 ~v~l~n~--~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~y~ 95 (340) +|.|+|+ .++++|+|++||.|+||+. .|.++|+..... ......+.++|+|+||| +|||++|+|.++|+.|+ T Consensus 13 t~~l~~~~~~~~v~v~P~~Ga~i~s~~~--~g~e~L~~~~~~---~~~~~~~~~gG~p~lfP~~gRi~~g~~~~~g~~~~ 87 (289) T 3k25_A 13 TYHLEDDQSLARLSLVPGRGGLVTEWTV--QGQPILYFDRER---FQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYR 87 (289) T ss_dssp EEEEEETTTTEEEEEEGGGTSEEEEEEE--TTEECBCBCTTG---GGSTTSCCCBSBCEEBSCSSCCGGGEEEETTEEEE T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEEE--CCEEEECCCCHH---HCCCCCCCCCCCCEEEEEECCCCCCEEEECCEEEE T ss_conf 9999928982899987237989999998--999998559378---62677753788818887848058994848997962 Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCH Q ss_conf 23568877666756657753599971136787489999996789862134884599999999804189999999948870 Q T0609 96 FPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSE 175 (340) Q Consensus 96 l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~ 175 (340) + ++||++|+.+|++.+..... ... +.+.+..++++..+||+.++++++|+|++++|+++++++|.+++ T Consensus 88 l---------~~HG~~~~~~w~~~~~~~~~-~~~--~~~~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~~~~~v~N~~~~ 155 (289) T 3k25_A 88 L---------KQHGFARDLPWEVIGQQTQD-NAR--LDLRLSHNDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQ 155 (289) T ss_dssp C---------CTTBSGGGSCCEEEEEECSS-SEE--EEEEEECCHHHHTTSCSCEEEEEEEEEETTEEEEEEEEEECSSS T ss_pred C---------CCCCCCCCCCCEEEEEECCC-CCE--EEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC T ss_conf 5---------77855157751677863178-826--89999647230024998569999999927726999999827997 Q ss_pred HHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC Q ss_conf 31000013624760477776324505887034178627765667742377886233366774346553240120454234 Q T0609 176 EMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLKDIDV 255 (340) Q Consensus 176 ~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 255 (340) ++||++|+||||+++.. ..+++.++...+.. ....+... ......+....+|+.+.... T Consensus 156 ~~p~~~g~HpyF~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~--- 214 (289) T 3k25_A 156 RMPFSLGFHPYFFCREK-----LGITLAIPANDYLD--QKTGDCHG-----------YDGQLNLTSPELDLAFTQIS--- 214 (289) T ss_dssp CEEECCEECCEEECSCC-----TTCEEECSCSEEEE--TTTCCEEE-----------CCSCCCTTSSEEEEEECCCS--- T ss_pred CEEEEEEECCEECCCCC-----EEEEEEECCCCEEC--CCCCCCCC-----------CCCCEECCCCCCCEEEEECC--- T ss_conf 77999782754725873-----04899745752022--45587435-----------57740105654410343068--- Q ss_pred CCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEE Q ss_conf 88663279997189983999998599886899648866883999415588888888887762576896989779999999 Q T0609 256 NGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMGDKKYACIEPQTSIINSPNVKLDRSVSGFKTLKPNESWSGVCKL 335 (340) Q Consensus 256 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g~~~~vciEP~t~~pda~n~~~~~~~~g~~~L~pGe~~~~~~~~ 335 (340) .....+.++..+.++.+..++.++++++|++.+ ++|||||||+++|||+|.+ .++++|+|||+++.+++| T Consensus 215 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vwtp~~-~~~vciEP~t~~~da~n~~-----~~l~~L~PGe~~~~~~~~ 284 (289) T 3k25_A 215 ----QPRAHFIDPDRNLKIEVSFSELYQTLVLWTVAG-KDYLCLEPWSGPRNALNSG-----EQLAWVEPYSSRSAWVNF 284 (289) T ss_dssp ----SSEEEEEETTTTEEEEEEECTTCCEEEEEEESS-SCEEEEEEESSCTTHHHHC-----TTCEEECTTEEEEEEEEE T ss_pred ----CCCEEEEECCCCCEEEEEECCCCCEEEEECCCC-CCEEEEECCCCCCCCCCCC-----CCCEEECCCCEEEEEEEE T ss_conf ----982278816898189999889998799927899-9899993748899855489-----998898999919999999 Q ss_pred EEE Q ss_conf 998 Q T0609 336 YIE 338 (340) Q Consensus 336 ~ve 338 (340) +|. T Consensus 285 ~v~ 287 (289) T 3k25_A 285 QVS 287 (289) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 7 >3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm} Probab=100.00 E-value=0 Score=317.56 Aligned_cols=291 Identities=17% Similarity=0.241 Sum_probs=224.1 Q ss_pred CCEEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCEE Q ss_conf 886899998798-4999950148689999998898599963588443300027632113477368862008868879978 Q T0609 15 SEHKCIRFAAGG-YEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKT 93 (340) Q Consensus 15 ~g~~~v~l~n~~-~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~~ 93 (340) ...+.|+|+|+. ++|+|+ ++||+|.+|+.+ +.++++.++ ..+.|..++.++|+.++|+||||++|+|+++|+. T Consensus 16 ~~v~~itl~N~~g~~v~i~-~~GA~i~~~~~~--~~~vvlg~d---~~~~y~~~~~~~Ga~~Gp~anRI~~g~f~~~G~~ 89 (338) T 3imh_A 16 KDLCEITLENDAGMAVKVL-NYGATLEKVLLD--GENMILSLN---SPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNEI 89 (338) T ss_dssp EEEEEEEEECSSSEEEEEE-TBTTEEEEEEET--TEECBCCCS---SGGGGGTSCCCTTCEECSBCSEEGGGEEEETTEE T ss_pred EEEEEEEEECCCCCEEEEE-CCCCEEEEEEEC--CEEEEECCC---CHHHHHHCCCCCCCCCCCCCCEEECCEEEECCEE T ss_conf 8999999996998399998-759199999989--912885289---9899842888468680675884558899889999 Q ss_pred EEECCCCCCCCCCCCCCC-C-CCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEE Q ss_conf 992356887766675665-7-75359997113678748999999678986213488459999999980418999999994 Q T0609 94 YKFPINEAKNNNYIHGFI-K-NSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVN 171 (340) Q Consensus 94 y~l~~n~~~~~~~~HG~~-~-~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N 171 (340) |+|++|++. +++||+. + .+.|.+... .+.+.++|++++...+. ..+||++++++++|+|+++. +++++++| T Consensus 90 y~L~~Ne~~--~~~HGg~g~~~~~~~~~~~-~~~~~~~v~l~~~~~~g---~~GyPg~~~~~vtY~L~~~~-~l~i~~~~ 162 (338) T 3imh_A 90 HQLPLNDGD--NHIHGGIGTDMHVWDFRPS-CDSEHARVDLTLFDPDG---NNDYPGNLKLHARYELDNEN-NLHYLLEA 162 (338) T ss_dssp EECCCCBTT--BEETTSSCGGGSBCEEEEE-ECSSEEEEEEEEEECTT---GGGCCSCEEEEEEEEEETTS-EEEEEEEE T ss_pred EECCCCCCC--CCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEECCCC---CCCCCEEEEEEEEEEEECCC-EEEEEEEE T ss_conf 966688997--6658985568750578887-14776489999974886---78998789999999991388-59999997 Q ss_pred CCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC----------- Q ss_conf 887031000013624760477776324505887034178627765667742377886233366774346----------- Q T0609 172 LSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVA----------- 240 (340) Q Consensus 172 ~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~----------- 240 (340) .+++++|+++++|||||++ ..+.+++|++++++++++|++.+|||+...+.++.+||........ T Consensus 163 ~~~~~tp~~l~~HpYFnL~----~~~~d~~L~i~a~~~l~~D~~~iPtG~~~~~~~t~~DFr~~~~i~~~~~~~~~~~~~ 238 (338) T 3imh_A 163 VSDKLTIFNPVNHTYFNLG----ERAEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKL 238 (338) T ss_dssp EESSSEECBCEECCEECTT----SCGGGCEEEECEEEECCBCTTSSBSSCCEECTTSTTCCSSCEEHHHHHTSCCHHHHH T ss_pred ECCCCCCEECCCCCEEECC----CCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCC T ss_conf 1476441022544789888----764001565335659984754565787113679733144862213223143011112 Q ss_pred CCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC-----------CCCCEEEEECCCCCCCCC Q ss_conf 553240120454234886632799971899839999985998868996488-----------668839994155888888 Q T0609 241 SHPIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM-----------GDKKYACIEPQTSIINSP 309 (340) Q Consensus 241 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-----------g~~~~vciEP~t~~pda~ 309 (340) ...+|++|.+... ...+++. .++++|++..+ .|.+++|+.. +....|||||| ++|||+ T Consensus 239 ~~G~D~~fvl~~~------~~~a~l~--~~g~~l~v~td--~p~~qvYT~~~l~~~~~~~~~~~~~giclEpq-~~Pda~ 307 (338) T 3imh_A 239 RNGLDHPFILNGN------NPAALLS--SNKHRLIVKTN--APALVLYAGNHFNHTGIVNNIGQYDGITFEAQ-CPPAEG 307 (338) T ss_dssp HTSCEEEEEECSC------SCSEEEE--CSSEEEEEEES--SSEEEEECCTTCCSBTTBTTCCTTSCEECEEE-SCCCSS T ss_pred CCCCCCCEECCCC------CCEEEEE--CCCCEEEEEEC--CCEEEEECCCCCCCCCCCCCCCCCCEEEEECC-CCCCCC T ss_conf 5688742674799------7489996--58828999978--99899988887787666788897078999443-799986 Q ss_pred CCCCCCCCCCCEEECCCCEEEEEEEEEEEE Q ss_conf 888877625768969897799999999985 Q T0609 310 NVKLDRSVSGFKTLKPNESWSGVCKLYIEN 339 (340) Q Consensus 310 n~~~~~~~~g~~~L~pGe~~~~~~~~~ve~ 339 (340) |. +++ ++|+|||+++.+++++++. T Consensus 308 N~--~~~----ivL~pge~y~~~t~y~F~~ 331 (338) T 3imh_A 308 ND--LGQ----ITLLPFEKFKRTVDWKFEE 331 (338) T ss_dssp SC--CGG----GEECTTCCEEEEEEEEEEE T ss_pred CC--CCC----EEECCCCEEEEEEEEEEEC T ss_conf 65--898----1898999998999999807 No 8 >1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Probab=100.00 E-value=0 Score=309.23 Aligned_cols=299 Identities=17% Similarity=0.144 Sum_probs=232.7 Q ss_pred CEEEEEEECCCEEEEEECCCCCEEEEEEECCCC---EEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCE Q ss_conf 868999987984999950148689999998898---59996358844330002763211347736886200886887997 Q T0609 16 EHKCIRFAAGGYEALIIPDVGGNVVELKDTNKG---VTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDK 92 (340) Q Consensus 16 g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~ 92 (340) ..+.|+|+|+.++++|+ ++||+|++|++..++ .++++.+ ...+.|..++.+.|+.++|+||||++|+|.++|+ T Consensus 20 ~v~~~tl~n~~~~v~i~-~~GA~i~~l~~~~~~G~~~~vvlg~---~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~ 95 (344) T 1snz_A 20 TVEKFQLQSDLLRVDII-SWGCTITALEVKDRQGRASDVVLGF---AELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGK 95 (344) T ss_dssp EEEEEEEECSSCEEEEE-TBTTEEEEEEEECTTSCEEECBCCC---SSHHHHHSSCSCTTCEECSBCSEEGGGEEEETTE T ss_pred EEEEEEEECCCEEEEEE-CCCCEEEEEEEECCCCCEEEEEECC---CCHHHHHHCCCCCCCEEEEECCCEECCEEEECCE T ss_conf 89999998799999997-7590999999888899887727789---9989994278866878652788259998998999 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC Q ss_conf 89923568877666756657753599971136787489999996789862134884599999999804189999999948 Q T0609 93 TYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNL 172 (340) Q Consensus 93 ~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~ 172 (340) +|+|+.|++...++.|++.+.+.|...+... .++++.+...+ ...+|||+++++++|+|+++.+.++++++ T Consensus 96 ~y~l~~n~~~~~~~g~~~~~~~~~~~~~~~~----~~v~~~~~~~~---~~~g~Pg~~~~~v~y~l~~~~~~~~~~~~-- 166 (344) T 1snz_A 96 EYHLAINKEPNSLHGGVRGFDKVLWTPRVLS----NGVQFSRISPD---GEEGYPGELKVWVTYTLDGGELIVNYRAQ-- 166 (344) T ss_dssp EEECCCTBTTBEETTSSSCGGGSBCEEEEET----TEEEEEEEECT---TGGGCCSCEEEEEEEEEETTEEEEEEEEE-- T ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEECCCC----CEEEEEEEECC---CCCCCCCCEEEEEEEEECCCCEEEEEECC-- T ss_conf 9981678898643357886026898831544----26999998067---76898741558999990488237788415-- Q ss_pred CCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCC Q ss_conf 8703100001362476047777632450588703417862776566774237788623336677434------6553240 Q T0609 173 SSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAV------ASHPIES 246 (340) Q Consensus 173 ~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~------~~~~~D~ 246 (340) +++++|+++++|+||+++......+.++.+++++..++++|++.+|||....+.+..+|+....... .....|+ T Consensus 167 ~~~~tp~~~~~h~yfnl~~~~~~~i~~~~l~i~a~~~~~~d~~~iptg~~~~~~~~~~Df~~~~~i~~~~~~~~~~~~d~ 246 (344) T 1snz_A 167 ASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDH 246 (344) T ss_dssp ESSCEECBCEECCCBCTTCTTCSCCTTCEEEECEEEECCBCTTSCBCSCCEECTTSTTCCSSCEEHHHHHHHTTCCCCEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCEECCCCCCCCCCCCCCC T ss_conf 78786632224203234755445200111000304499877645756764356688303107744352100023321255 Q ss_pred EEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC--------------CCCEEEEECCCCCCCCCCCC Q ss_conf 1204542348866327999718998399999859988689964886--------------68839994155888888888 Q T0609 247 LFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMG--------------DKKYACIEPQTSIINSPNVK 312 (340) Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g--------------~~~~vciEP~t~~pda~n~~ 312 (340) .+... ........+++.++.+++.+.+.. .+|++++||+.. .+.+||||||+ +|||+|++ T Consensus 247 ~~~~~---~~~~~~~~~~l~~~~s~~~l~v~s--~~p~l~vyT~~~~~~~~~~~~g~~~~~~~giclEPq~-~PDA~N~~ 320 (344) T 1snz_A 247 NFCLK---GSKEKHFCARVHHAASGRVLEVYT--TQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQN-WPDAVNQP 320 (344) T ss_dssp EEEEC---CCSSCEEEEEEEETTTTEEEEEEE--SSSEEEEECCTTCEEEEECGGGCEEETTSCBEEEEES-CTTGGGCT T ss_pred CEEEC---CCCCCCCEEEEEECCCCCEEEECC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCC T ss_conf 32542---688773138998089994678738--9989999878987864437788466887899996888-98765788 Q ss_pred CCCCCCCCEEECCCCEEEEEEEEEE Q ss_conf 8776257689698977999999999 Q T0609 313 LDRSVSGFKTLKPNESWSGVCKLYI 337 (340) Q Consensus 313 ~~~~~~g~~~L~pGe~~~~~~~~~v 337 (340) +++ .++|+|||+++.+++|++ T Consensus 321 ~~~----~~vL~pge~y~~~t~y~F 341 (344) T 1snz_A 321 RFP----PVLLRPGEEYDHTTWFKF 341 (344) T ss_dssp TSC----CCEECTTSCEEEEEEEEE T ss_pred CCC----CEEECCCCEEEEEEEEEE T ss_conf 899----849999898989999999 No 9 >2cir_A Hexose-6-phosphate mutarotase; mannose-6-phosphate-1-epimerase, galactose-6-phosphate-1- epimerase, hypothetical protein, isomerase; HET: BG6; 1.6A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Probab=100.00 E-value=4.2e-45 Score=278.04 Aligned_cols=267 Identities=24% Similarity=0.297 Sum_probs=182.4 Q ss_pred CCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEE Q ss_conf 8868999987984999950148689999998898599963588443300027632113477368-862008868879978 Q T0609 15 SEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKT 93 (340) Q Consensus 15 ~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~ 93 (340) +...+..++|+..+|+|. .+||.|+||+. .|.++||..+... .....+.+||+|+||| .||..+ +|+. T Consensus 8 ~~~~l~~~~~~~~~a~i~-~~Ga~l~s~~~--~g~e~L~~s~~a~---~~~~~~irGGiPvlfP~~G~~~~-----~g~~ 76 (297) T 2cir_A 8 KEVVLTHPADETTSVHIL-KYGATVYSWKL--KSEEQLWLSTAAK---LDGSKPVRGGIPLVFPVFGKNST-----DEHL 76 (297) T ss_dssp SEEEEEETTEEEEEEEEE-TBTTEEEEEEE--TTEECBCBCTTCC---CSSSSCCSBSBCEEBSCSSCCSS-----STTG T ss_pred CEEEEECCCCCCEEEEEE-CCCCEEEEEEE--CCEEEEECCCHHH---CCCCCCCCCCCEEEEEEECCCCC-----CCCC T ss_conf 748999069997899998-78929999998--9989884387776---17999755888398833088988-----9862 Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEC-CCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC Q ss_conf 99235688776667566577535999711367874899999967-89862134884599999999804189999999948 Q T0609 94 YKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFT-KENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNL 172 (340) Q Consensus 94 y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~-~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~ 172 (340) |+ +++|||+|++.|+|++.+.+ +...|++++.+. ++++++++|||.|+++++|+|.+++|+++++|+|. T Consensus 77 ~~---------lp~HGfaR~~~W~v~~~~~~-~~~~v~~~l~~~~~~~~~~~~yPf~f~l~~~y~L~~~~L~~~~~v~N~ 146 (297) T 2cir_A 77 SK---------LPQHGLARNSTWEFLGQTKE-NPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENT 146 (297) T ss_dssp GG---------SCTTBSGGGSBCEEEEEEEE-TTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECSSEEEEEEEEECC T ss_pred CC---------CCCCCCCCCCCEEEEEECCC-CCCEEEEEEEECCCCHHHHHCCCCEEEEEEEEEECCCEEEEEEEEEEC T ss_conf 68---------98885225643699886058-874699999846799779821884179999999889848999999919 Q ss_pred C-CHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC Q ss_conf 8-703100001362476047777632450588703417862776566774237788623336677434655324012045 Q T0609 173 S-SEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLK 251 (340) Q Consensus 173 ~-~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 251 (340) + +++|||++|+||||++++.....+.+ ++...+ .|.. .+.. . ....+.......+|++|... T Consensus 147 g~~~~mpf~~G~HpYF~v~~~~~~~~~~----l~~~~~--~d~~---~~~~-------~-~~~~~~~~~~~~~D~vy~~~ 209 (297) T 2cir_A 147 SSSKELKFNWLFHTYFRIEDIEGTMVSN----LAGMKL--YDQL---LKES-------Y-VDKHPVVTFNQETDVIYQNV 209 (297) T ss_dssp CSSCCEEEEEEECCEEECSCGGGEEEES----CTTCEE--EETT---TTEE-------E-ECCSSSBCCSSCEEEEECCC T ss_pred CCCCCEEEEEECCCEEECCCCCCEEECC----CCCCEE--EEEC---CCCC-------C-CCCCCCCCCCCCEEEEECCC T ss_conf 9774228778526268448645238826----888605--6403---6776-------2-56787241685404798279 Q ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC--------------CCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 4234886632799971899839999985998868996488--------------66883999415588888888887762 Q T0609 252 DIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM--------------GDKKYACIEPQTSIINSPNVKLDRSV 317 (340) Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--------------g~~~~vciEP~t~~pda~n~~~~~~~ 317 (340) . ....+.+.+. +.++......+++++++|||. +.++||||||. +. T Consensus 210 ~------~~~~i~~~~~--~~~~~~~~~~~~~~~vvWnP~~~~~~~~~d~ep~~~~~~~vCVEp~-------------~~ 268 (297) T 2cir_A 210 S------AERAIQIVDK--GVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPG-------------HV 268 (297) T ss_dssp C------TTCCEEEEET--TEEEEEEEEESCCEEEEEECHHHHHHHCTTCCSTTGGGGEEEEEEE-------------EE T ss_pred C------CCEEEEEECC--CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCC-------------CC T ss_conf 9------8739999589--9609999938999799979974467611114888764798998945-------------57 Q ss_pred CCCEEECCCCEEEEEEEEEEEEC Q ss_conf 57689698977999999999859 Q T0609 318 SGFKTLKPNESWSGVCKLYIENM 340 (340) Q Consensus 318 ~g~~~L~pGe~~~~~~~~~ve~~ 340 (340) .++++|+|||+|+++++|+.++| T Consensus 269 ~~~v~L~PGes~~~~q~l~~~~~ 291 (297) T 2cir_A 269 HDFISLAPGKKWNAYQLLCKEEL 291 (297) T ss_dssp EEEEEECTTCEEEEEEEEECC-- T ss_pred CCCEEECCCCEEEEEEEEECCCC T ss_conf 99889899996999999953662 No 10 >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Probab=100.00 E-value=2.7e-41 Score=256.28 Aligned_cols=259 Identities=17% Similarity=0.242 Sum_probs=188.1 Q ss_pred EECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEEC Q ss_conf 5208868999987984999950148689999998898599963588443300027632113477368-862008868879 Q T0609 12 IIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLG 90 (340) Q Consensus 12 ~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~ 90 (340) ..+++.++|+|+|...+|+|. .+||.|+||+..+ +.++||..+... .....+.|||+||||| .|+ T Consensus 36 ~~~~~l~~i~i~~~~~~a~i~-l~GA~l~Sw~~~~-~~e~Lw~s~~a~---~~~~~aiRGGiPicfP~fG~--------- 101 (309) T 2hta_A 36 RQLDDLDLIVVDHPQVKASFA-LQGAHLLSWKPVG-EEEVLWLSNNTP---FKTGVALRGGVPICWPWFGP--------- 101 (309) T ss_dssp EEETTEEEEEEEETTEEEEEE-TBTTEEEEEEETT-SCCCBCBCTTCC---CCTTCCCSBSBCEEBSCCSS--------- T ss_pred EEECCCCEEEEECCCEEEEEE-CCCCEEEEEEECC-CCEEEEECCHHH---CCCCCCCCCCCEEEEEECCC--------- T ss_conf 852996589997899899998-8898998999499-988898082540---36888767888698623289--------- Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE Q ss_conf 97899235688776667566577535999711367874899999967898621348845999999998041899999999 Q T0609 91 DKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVV 170 (340) Q Consensus 91 g~~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~ 170 (340) .+..+++.|||+|++.|++.++.+++++. +++|.+.++++++..||++|+++++|+|.. +++|+ T Consensus 102 ---------~~~~~lp~HGFAR~~~W~l~~~~~~~~~~--~v~~~L~~~~~t~~~~P~~f~l~~~~~L~~-----~l~v~ 165 (309) T 2hta_A 102 ---------AAQQGLPSHGFARNLPWALKAHNEDDNGV--MLTFELQSSEATRKYWPHDFTLLARFKVGK-----TCEIE 165 (309) T ss_dssp ---------CSSTTCCTTBSGGGSBCEEEEEEECSSCE--EEEEEEECCHHHHHHSCCCCEEEEEEEESS-----SEEEE T ss_pred ---------CCCCCCCCCCCEECCCEEEEEECCCCCCE--EEEEEECCCCCHHHHCCEEEEEEEEEECCC-----EEEEE T ss_conf ---------98788987633126854899843889818--999997898302331750079999998686-----59999 Q ss_pred ECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC Q ss_conf 48870310000136247604777763245058870341786277656677423778862333667743465532401204 Q T0609 171 NLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSL 250 (340) Q Consensus 171 N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 250 (340) |.+++++||++|+||||++++.....+.+ ....+ .|. +...+.. ....+........|.+|.. T Consensus 166 N~~~~~~pf~~glHpYF~V~d~~~~~v~g-----l~~~~--~D~--~~~~~~~--------~~~~~~~~~~~~~driy~~ 228 (309) T 2hta_A 166 LEAHGEFATTSALHSYFNVGDIANVKVSG-----LGDRF--IDK--VNDAKEG--------VLTDGIQTFPDRTDRVYLN 228 (309) T ss_dssp EEEESSEEEEEEECCEEECSCGGGCEEEC-----CCSEE--EET--TTTTEEE--------ECSSSCEECSSCEEEEESS T ss_pred ECCCCCCCCCCCCCCEEECCCHHCCEEEC-----CCCCC--CCC--CCCCCCC--------EECCCCCCCCCCEEEEECC T ss_conf 74588510150258406657600208976-----78530--303--5575442--------5258855246855799758 Q ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC-------------CCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 54234886632799971899839999985998868996488-------------66883999415588888888887762 Q T0609 251 KDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM-------------GDKKYACIEPQTSIINSPNVKLDRSV 317 (340) Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-------------g~~~~vciEP~t~~pda~n~~~~~~~ 317 (340) . ...+.+.++..+++|++..+ +++.+++|||+ ++++||||||+.+ T Consensus 229 ~--------~~~~~i~d~~~~r~i~i~~~-g~~~~VVWnP~~~~a~~m~D~~~~~~~~fvCVEP~~~------------- 286 (309) T 2hta_A 229 P--------EACSVIHDATLNRTIDVVHH-HHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYA------------- 286 (309) T ss_dssp C--------CSEEEEEETTTTEEEEEEEE-SCSEEEEEECHHHHHHHCTTSCTTGGGGEEEEEEEEE------------- T ss_pred C--------CCCEEEEECCCCCEEEEEEC-CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEECCCCC------------- T ss_conf 9--------98689997899988999974-9983999796346423012376678888899798006------------- Q ss_pred CCCEEECCCCEEEEEEEEEEEE Q ss_conf 5768969897799999999985 Q T0609 318 SGFKTLKPNESWSGVCKLYIEN 339 (340) Q Consensus 318 ~g~~~L~pGe~~~~~~~~~ve~ 339 (340) ...+.|.||++++..++|+|++ T Consensus 287 ~~~~~~~~g~~~~~~q~i~v~~ 308 (309) T 2hta_A 287 TAPQQATEEKPSRLAQTICVAK 308 (309) T ss_dssp EEEEEEBTTBCEEEEEEEEEEC T ss_pred CCCCCCCCCCCEEEEEEEEEEC T ss_conf 9984537999679999999974 No 11 >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Probab=100.00 E-value=9.5e-37 Score=229.95 Aligned_cols=244 Identities=17% Similarity=0.189 Sum_probs=169.2 Q ss_pred EEECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEE Q ss_conf 35208868999987984999950148689999998898599963588443300027632113477368-86200886887 Q T0609 11 EIIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKL 89 (340) Q Consensus 11 ~~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~ 89 (340) .+.+|+.++|+|+|...+|+|. .+||.|+||+.+..+.++||..+... .....+.|||+|+||| .|+. T Consensus 15 ~~~~~~l~~~~l~~~~~~a~i~-l~Ga~l~s~~~~~g~~~~Lw~s~~a~---~~~~~~IRGGiPv~fP~fG~~------- 83 (270) T 1jov_A 15 LVQHNDIPVLHLKHAVGTAKIS-LQGAQLISWKPQNAKQDVLWLSEVEP---FKNGNAIRGGVPICYPWFGGV------- 83 (270) T ss_dssp EEEETTEEEEEEEETTEEEEEE-TBTTEEEEEEETTCSSCSBCBCTTCC---CCTTSCCSBSCCEEBSSCGGG------- T ss_pred EEECCCCCEEEEECCCEEEEEE-CCCCEEEEEEECCCCEEEEEECCHHH---CCCCCCCCCCCEECCCCCCCC------- T ss_conf 7602990289994899899998-99968999997999803799484786---379996348662645303999------- Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEE Q ss_conf 99789923568877666756657753599971136787489999996789862134884599999999804189999999 Q T0609 90 GDKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSV 169 (340) Q Consensus 90 ~g~~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v 169 (340) +.+.|||||++.|++.+.+++.. .+++++.+. .+|+.++++++|+|+ +++++ T Consensus 84 --------------~~p~HGFAR~~~W~l~~~~~~~~--~~~l~~~l~-------~~~~~~~~~~~~~lt-----~~~~v 135 (270) T 1jov_A 84 --------------KQPAHGTARIRLWQLSHYYISVH--KVRLEFELF-------SDLNIIEAKVSMVFT-----DKCHL 135 (270) T ss_dssp --------------SSSTTBSGGGSBCEEEEEEEETT--EEEEEEEEE-------CTTSCEEEEEEEEES-----SSEEE T ss_pred --------------CCCCCCCCCCCCEEEEEECCCCC--EEEEEECCC-------CCCCCCCEEEEEEEC-----CEEEE T ss_conf --------------98989751276249977617762--389972345-------787632189999934-----23799 Q ss_pred EECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 94887031000013624760477776324505887034178627765667742377886233366774346553240120 Q T0609 170 VNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFS 249 (340) Q Consensus 170 ~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 249 (340) +|.++.++||++|+||||++++.....+.+ -....+ .+.. .+ ......+ .......|.+|. T Consensus 136 ~n~~~~~~~f~~glHpYF~v~d~~~~~v~g-----l~~~~~-~~~~---~~---------~~~~~~~-~~~~~~~d~iy~ 196 (270) T 1jov_A 136 TFTHYGEESAQAALHTYFNIGDINQVEVQG-----LPETCF-NSLN---QQ---------QENVPSP-RHISENVDCIYS 196 (270) T ss_dssp EEEECCSSCEEEEECCEEECSCGGGEEEES-----CCSEEE-ETTT---TE---------EEECCSS-BCCSSCEEEEEE T ss_pred EECCCCCCEEEEEEEEEEECCCCCCEEEEC-----CCCCCE-ECCC---CC---------CEECCCC-CCCCCCEEEEEE T ss_conf 974699714777540127517832169967-----886441-0001---53---------2103787-135777879991 Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC----------CCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 4542348866327999718998399999859988689964886----------688399941558888888888776257 Q T0609 250 LKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMG----------DKKYACIEPQTSIINSPNVKLDRSVSG 319 (340) Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g----------~~~~vciEP~t~~pda~n~~~~~~~~g 319 (340) ... ..+++.++..+++|.+..+ +++.+++|||+. +++||||||... T Consensus 197 ~~~--------~~~~i~d~~~~~~i~i~~~-g~~~~vVWnP~~~~a~~m~d~~~~~fvCVEpa~~--------------- 252 (270) T 1jov_A 197 AEN--------MQNQILDKSFNRTIALHHH-NASQFVLWNPWHKKTSGMSETGYQKMLCLETARI--------------- 252 (270) T ss_dssp CSS--------SEEEEEETTTTEEEEEEEE-SCSEEEEEECTTSCCTTCCTTGGGGEEEEEEEEE--------------- T ss_pred CCC--------CCEEEEECCCCCEEEEEEC-CCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCC--------------- T ss_conf 799--------8789997899988999984-9996899797410004174478867899792677--------------- Q ss_pred CEEECCCCEEEEEEEEE Q ss_conf 68969897799999999 Q T0609 320 FKTLKPNESWSGVCKLY 336 (340) Q Consensus 320 ~~~L~pGe~~~~~~~~~ 336 (340) ...|+|||+|+.+++|. T Consensus 253 ~~~L~PGes~t~~~~i~ 269 (270) T 1jov_A 253 HHLLEFGESLSVEISLK 269 (270) T ss_dssp EEEECTTCEEEEEEEEC T ss_pred CCCCCCCCEEEEEEEEE T ss_conf 76088999199999992 No 12 >3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Probab=96.85 E-value=0.016 Score=31.42 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=61.4 Q ss_pred EEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEEEE Q ss_conf 68999987984999950148689999998898599963588443300027632113477368-86200886887997899 Q T0609 17 HKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKTYK 95 (340) Q Consensus 17 ~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~y~ 95 (340) .+.|+++|+-++++|- ..||+|.++.++. .-...+ ...|.. ++.. +++..-..+.+-+ T Consensus 3 ~~~itv~nd~~~~~is-~~Gg~I~~~~Lk~----y~~~~~--------~~~p~~----L~~~~~~~~~~~~~g~~~---- 61 (280) T 3bs6_A 3 GKLISVKTDVLDLTIN-TRGGDVEQALLPA----YPKELN--------STQPFQ----LLETSPQFIYQAQSGLTG---- 61 (280) T ss_dssp -CEEEEECSSCEEEEE-TBTTEEEEEEEEE----EESSTT--------CCSEEE----EEEEETTEEEEEEEEEES---- T ss_pred CCEEEEECCCEEEEEE-CCCCEEEEEECCC----CCCCCC--------CCCCEE----ECCCCCCCEEEEEEEEEC---- T ss_conf 5199998896999998-9997785878157----854427--------999859----726899851478610002---- Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC--EEEEEEEEEECC Q ss_conf 235688776667566577535999711367874899999967898621348845999999998041--899999999488 Q T0609 96 FPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK--GLKQTTSVVNLS 173 (340) Q Consensus 96 l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~--~L~i~~~v~N~~ 173 (340) .+......+..-..+.....-.......+. .++.|..... ..+.++.+|+|.++ .+.++++|+|.+ T Consensus 62 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~vt~~~~~~--------~g~~v~k~ytf~~d~Y~i~~~~~v~N~s 129 (280) T 3bs6_A 62 --RDGPDNPANGPRPLYNVEKDAYVLAEGQNE--LQVPMTYTDA--------AGNTFTKTFVLKRGDYAVNVNYNVQNAG 129 (280) T ss_dssp --TTCTTSGGGSSCCBCBCSCSEEECCTTCSE--EEEEEEEECT--------TCCEEEEEEEEETTCCEEEEEEEEECCS T ss_pred --CCCCCCCCCCCCCCEEECCCCEEECCCCCC--EEEEEEEECC--------CCEEEEEEEEECCCCEEEEEEEEEEECC T ss_conf --578776467777434844772375489850--7999999879--------9859999999889957899999999268 Q ss_pred CHHHEE Q ss_conf 703100 Q T0609 174 SEEMPL 179 (340) Q Consensus 174 ~~~~p~ 179 (340) +.+... T Consensus 130 ~~~~~~ 135 (280) T 3bs6_A 130 EKPLEI 135 (280) T ss_dssp SSCEEE T ss_pred CCCCCC T ss_conf 886411 No 13 >3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic domain, transmembrane, chaperone; 2.50A {Escherichia coli K12} Probab=96.32 E-value=0.037 Score=29.32 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=61.1 Q ss_pred EEEEEEECCCEEEEEECCCCCEEEEEEECC------CCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEEC Q ss_conf 689999879849999501486899999988------98599963588443300027632113477368862008868879 Q T0609 17 HKCIRFAAGGYEALIIPDVGGNVVELKDTN------KGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLG 90 (340) Q Consensus 17 ~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~ 90 (340) .+.|+|+|+.++++|- ..||+|.++.++. .+..+.+.... +++.....+.+- T Consensus 34 ~~~itvetd~~~~~~s-~~GG~I~~~~Lk~y~~~~~~~~p~~l~~~~---------------------~~~~~~~~~~l~ 91 (330) T 3blc_A 34 GKLISVKTDVLDLTIN-TRGGDVEQALLPAYPKELNSTQPFQLLETS---------------------PQFIYQAQSGLT 91 (330) T ss_dssp CCEEEEECSSCEEEEE-TBTCCEEEEEEEEEESSTTCSSEEEEEEEC---------------------SSCEEEEEEEEE T ss_pred CCEEEEECCCEEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEECCCC---------------------CCCCEEEEEEEE T ss_conf 7879998897999997-999778586616785332799984970589---------------------876215654101 Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC--EEEEEEE Q ss_conf 97899235688776667566577535999711367874899999967898621348845999999998041--8999999 Q T0609 91 DKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK--GLKQTTS 168 (340) Q Consensus 91 g~~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~--~L~i~~~ 168 (340) + .+......+..-..+.............+. .++.|.....+ .+.++.+|+|.++ .+.++++ T Consensus 92 ~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~vtf~~~~~~--------g~~v~k~ytf~~~~Y~i~~~~~ 155 (330) T 3blc_A 92 G------RDGPDNPANGPRPLYNVEKDAYVLAEGQNE--LQVPMTYTDAA--------GNTFTKTFVLKRGDYAVNVNYN 155 (330) T ss_dssp S------TTCTTSGGGCSCCBCBCSCSEEECCTTCCE--EEEEEEEECTT--------SCEEEEEEEEETTCCEEEEEEE T ss_pred C------CCCCCCCCCCCCCCEEECCCEEEECCCCCC--EEEEEEEECCC--------CEEEEEEEEECCCCEEEEEEEE T ss_conf 2------678775467777523725770573489960--69999998899--------8699999998689468999999 Q ss_pred EEECCCHHHEEC Q ss_conf 994887031000 Q T0609 169 VVNLSSEEMPLS 180 (340) Q Consensus 169 v~N~~~~~~p~~ 180 (340) |+|.|.++.... T Consensus 156 v~N~s~~~~~~~ 167 (330) T 3blc_A 156 VQNAGEKPLEIS 167 (330) T ss_dssp EECCSSSCEEEE T ss_pred EEECCCCCCCCC T ss_conf 994788865113 No 14 >1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Probab=92.35 E-value=0.38 Score=23.43 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=78.3 Q ss_pred EEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCC--------CEE----- Q ss_conf 7523520886899998798499995014868999999889859996358844330002763211--------347----- Q T0609 8 IKEEIIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVY--------GLP----- 74 (340) Q Consensus 8 ~~~~~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------G~p----- 74 (340) ....+.+.|.+-|.+.|+.+.+.|.|..||.|..|........+..+. ....+.|....... |+. T Consensus 389 ~~~D~d~DG~~Ei~~~~~~~~~~~~~~~gg~i~E~d~~~~~~N~~~tl--~r~~E~yh~~~~~~~~~~~~~~~i~s~h~~ 466 (659) T 1k1x_A 389 KILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVL--PRRWEHYHEVPEATKPEKESEEGIASIHEL 466 (659) T ss_dssp EEECSSSSSSCEEEEECSSEEEEEETTTTTEEEEEEETTTTEETTCCC--CCCCCTTCC--------------------- T ss_pred EEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEE--CCCCCCHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 541347899868999769668999138984799960565221200121--147654045552268755567776555441 Q ss_pred ----------ECCCCCEECCCEEEECCEEEEECCCCC-----CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCC Q ss_conf ----------736886200886887997899235688-----77666756657753599971136787489999996789 Q T0609 75 ----------VLFPPNRIDDGTFKLGDKTYKFPINEA-----KNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKE 139 (340) Q Consensus 75 ----------i~~p~~Ri~~g~f~~~g~~y~l~~n~~-----~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~ 139 (340) .+.|- +-..+.|.- |=+++... .+...-=|-....+.+..-.. ..+.++..-.. T Consensus 467 ~~~~~~~~~~~l~yD-~~~r~~~~d----h~~~~~~~~~~~~~~~~~e~~df~~~~y~~~~~~-----~~~~~~~~g~~- 535 (659) T 1k1x_A 467 GKQIPEEIRRELAYD-WQLRAILQD----HFIKPEETLDNYRLVKYHELGDFVNQPYEYEMIE-----NGVKLWREGGV- 535 (659) T ss_dssp --CCCHHHHTTCCCC-SSCCCEEEE----EEECTTCCHHHHHTTCSCCCBSCSSSCCEEEEET-----TEEEEEEEEEE- T ss_pred CCCCCHHHHHHCCCC-CCCCCCHHH----CCCCCCCCHHHHHCCCCEEECCCCCCCCEEEEEC-----CCEEEEEECCC- T ss_conf 123422345423566-311333111----0478887788874577235324346762346415-----71699996761- Q ss_pred CCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCH Q ss_conf 862134884599999999804189999999948870 Q T0609 140 NEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSE 175 (340) Q Consensus 140 ~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~ 175 (340) +...+.++.++..|+++.++++++|++.|.+.. T Consensus 536 ---~~~~~~~~~~~K~~~~~~~~~~~~y~~~~~~~~ 568 (659) T 1k1x_A 536 ---YAEEKIPARVEKKIELTEDGFIAKYRVLLEKPY 568 (659) T ss_dssp ---ESSSEEEEEEEEEEEEETTEEEEEEEEEESSCC T ss_pred ---CCCCCCCEEEEEEEEECCCCEEEEEEEEECCCC T ss_conf ---346756548999999718950899999507985 No 15 >1ejx_B Urease beta subunit; alpha-beta barrel, nickel metalloenzyme, temperature dependent structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.85.3.1 PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* 1fwe_B* 1fwf_B* 1fwg_B* 1fwh_B* ... Probab=62.34 E-value=3.9 Score=17.61 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=21.1 Q ss_pred EEEECCEEEEEEEEEECCCHHHEECCCCCCEE Q ss_conf 99804189999999948870310000136247 Q T0609 156 YELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF 187 (340) Q Consensus 156 ~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF 187 (340) +.|....-+++++|+|+||+|. +.+-|--| T Consensus 13 I~lN~gr~~~~l~V~N~GDRpI--QVGSH~HF 42 (101) T 1ejx_B 13 IALNTGRATCRVVVENHGDRPI--QVGSHYHF 42 (101) T ss_dssp EECSTTCCEEEEEEEECSSSCE--EEETTSCG T ss_pred EEECCCCCEEEEEEEECCCCCE--EECCCCCH T ss_conf 8876999678999772798635--87354553 No 16 >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} Probab=60.40 E-value=6 Score=16.50 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=30.3 Q ss_pred EEEEEEEEEEEC--CEEEEEEEEEECCCHHHEECCCCCCEEECC Q ss_conf 599999999804--189999999948870310000136247604 Q T0609 149 EFQFKLSYELSS--KGLKQTTSVVNLSSEEMPLSVGYHSAFNVP 190 (340) Q Consensus 149 ~~~~~~t~~l~~--~~L~i~~~v~N~~~~~~p~~~~~H~YF~~~ 190 (340) .++++++|++.+ +.|+...+++|.|++++.+....=..+.+| T Consensus 144 ~l~v~l~y~i~~~~~vi~~~~~i~N~g~~~v~l~~~~s~~l~~~ 187 (745) T 3mi6_A 144 GLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLP 187 (745) T ss_dssp CCEEEEEEEEEGGGTEEEEEEEEECCSSSCEEEEEEEEEEEEES T ss_pred CEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCCCCCCC T ss_conf 93999999997899989999999989998889850420525578 No 17 >1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} Probab=59.80 E-value=6.2 Score=16.44 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=10.7 Q ss_pred EECCCCEEEEEEEEE Q ss_conf 969897799999999 Q T0609 322 TLKPNESWSGVCKLY 336 (340) Q Consensus 322 ~L~pGe~~~~~~~~~ 336 (340) .++|||+.+...+.+ T Consensus 321 pI~PGETk~v~v~a~ 335 (382) T 1yew_A 321 PLAPGETRTVDVTAS 335 (382) T ss_dssp CBCTTCEEEEEEEEE T ss_pred CCCCCCCEEEEEEEE T ss_conf 759996248999961 No 18 >4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Probab=52.80 E-value=5 Score=16.99 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=20.8 Q ss_pred EEEECCEEEEEEEEEECCCHHHEECCCCCCEE Q ss_conf 99804189999999948870310000136247 Q T0609 156 YELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF 187 (340) Q Consensus 156 ~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF 187 (340) +.|....-+++++|+|+||+|. +.+-|--| T Consensus 19 I~lN~gr~~~~l~V~NtGDRpI--QVGSH~HF 48 (126) T 4ubp_B 19 IEINAGREKTTIRVSNTGDRPI--QVGSHIHF 48 (126) T ss_dssp EETTTTSCEEEEEEEECSSSCE--EEETTSCG T ss_pred EEECCCCCEEEEEEEECCCCCE--EECCCCCH T ss_conf 8876999778999773798646--86165584 No 19 >3isy_A Bsupi, intracellular proteinase inhibitor; NP_388994.1, intracellular proteinase inhibitor (bsupi) from bacillus subtilis, structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Probab=41.13 E-value=12 Score=14.68 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=25.0 Q ss_pred EEEEEEEEEEECCEEEEEEEEEECCCHHHEECCC Q ss_conf 5999999998041899999999488703100001 Q T0609 149 EFQFKLSYELSSKGLKQTTSVVNLSSEEMPLSVG 182 (340) Q Consensus 149 ~~~~~~t~~l~~~~L~i~~~v~N~~~~~~p~~~~ 182 (340) .+.+.+...-.+..+.+.++++|.++++..+.+. T Consensus 6 ~~~~~~~~~~~~e~v~~~ltl~N~~~~~v~l~F~ 39 (120) T 3isy_A 6 EVVLSIDAIQEPEQIKFNMSLKNQSERAIEFQFS 39 (120) T ss_dssp SEEEEEEEEECSSCEEEEEEEEECSSSCEEEEES T ss_pred EEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEC T ss_conf 0799841002785299999999189976898977 No 20 >1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A* Probab=40.63 E-value=13 Score=14.63 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=24.4 Q ss_pred CCEEEEEE-EEEEEECCEEEEEEEEEECCCHHHEECCCCCCEE Q ss_conf 88459999-9999804189999999948870310000136247 Q T0609 146 FSHEFQFK-LSYELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF 187 (340) Q Consensus 146 ~P~~~~~~-~t~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF 187 (340) -|+.+... =.+.|....-+++++|+|.||+|.- .+-|--| T Consensus 107 iPGei~~~~~~I~ln~gr~~~~l~V~N~GDRPIQ--VGSH~HF 147 (238) T 1e9y_A 107 VPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQ--IGSHFHF 147 (238) T ss_dssp CTTCEECCSCEEETTTTCCCCEEEEEECSSSCEE--EETTSCG T ss_pred CCCCEECCCCCCCCCCCCCEEEEEEECCCCCCEE--ECCCCCH T ss_conf 8975545998601379986699999569987505--4365424 No 21 >3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium} Probab=29.56 E-value=7.8 Score=15.86 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=6.4 Q ss_pred ECCCCEEEEEEE Q ss_conf 698977999999 Q T0609 323 LKPNESWSGVCK 334 (340) Q Consensus 323 L~pGe~~~~~~~ 334 (340) ++|||+.+..++ T Consensus 327 I~PGETr~v~v~ 338 (392) T 3chx_A 327 LAPGETKTIEVK 338 (392) T ss_dssp CCTTCCCCCCEE T ss_pred CCCCCCEEEEEE T ss_conf 699961589999 No 22 >2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene} Probab=23.80 E-value=25 Score=12.94 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=10.9 Q ss_pred EEEEEEEECCEEEEEEE Q ss_conf 99999980418999999 Q T0609 152 FKLSYELSSKGLKQTTS 168 (340) Q Consensus 152 ~~~t~~l~~~~L~i~~~ 168 (340) -+++|+|+++.|.|+.+ T Consensus 31 gtvtytldgndleirit 47 (85) T 2kl8_A 31 GTVTYTLDGNDLEIRIT 47 (85) T ss_dssp CEEEEEECSSCEEEEEE T ss_pred CEEEEEECCCEEEEEEE T ss_conf 55899954971699982 Done!