Query         T0609 NP_347334.1, CLOSTRIDIUM ACETOBUTYLICUM, 340 residues
Match_columns 340
No_of_seqs    133 out of 2509
Neff          9.3 
Searched_HMMs 22458
Date          Mon Jul  5 09:03:59 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0609.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0609.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1z45_A GAL10 bifunctional prot 100.0       0       0  336.4  31.5  309   12-337   368-698 (699)
  2 1nsx_A Galactose mutarotase; e 100.0       0       0  333.8  30.0  307    6-338     1-337 (347)
  3 3dcd_A Galactose mutarotase re 100.0       0       0  329.3  30.2  289   19-339     2-293 (307)
  4 1lur_A Aldose 1-epimerase; vit 100.0       0       0  329.2  29.3  300   16-340    11-338 (339)
  5 1yga_A Hypothetical 37.9 kDa p 100.0       0       0  324.6  28.6  312   15-338     8-341 (342)
  6 3k25_A SLR1438 protein; struct 100.0       0       0  322.0  30.4  272   19-338    13-287 (289)
  7 3imh_A Galactose-1-epimerase;  100.0       0       0  317.6  31.1  291   15-339    16-331 (338)
  8 1snz_A Aldose 1-epimerase; mut 100.0       0       0  309.2  32.9  299   16-337    20-341 (344)
  9 2cir_A Hexose-6-phosphate muta 100.0 4.2E-45       0  278.0  16.4  267   15-340     8-291 (297)
 10 2hta_A Putative enzyme related 100.0 2.7E-41 1.4E-45  256.3  23.9  259   12-339    36-308 (309)
 11 1jov_A HI1317; hypothetical pr 100.0 9.5E-37 4.2E-41  229.9  23.5  244   11-336    15-269 (270)
 12 3bs6_A Inner membrane protein   96.8   0.016 7.2E-07   31.4  12.8  130   17-179     3-135 (280)
 13 3blc_A Inner membrane protein   96.3   0.037 1.7E-06   29.3  12.5  126   17-180    34-167 (330)
 14 1k1x_A 4-alpha-glucanotransfer  92.4    0.38 1.7E-05   23.4  11.3  152    8-175   389-568 (659)
 15 1ejx_B Urease beta subunit; al  62.3     3.9 0.00017   17.6   2.6   30  156-187    13-42  (101)
 16 3mi6_A Alpha-galactosidase; NE  60.4       6 0.00027   16.5  12.6   42  149-190   144-187 (745)
 17 1yew_A Particulate methane mon  59.8     6.2 0.00027   16.4   4.0   15  322-336   321-335 (382)
 18 4ubp_B Protein (urease (chain   52.8       5 0.00022   17.0   1.8   30  156-187    19-48  (126)
 19 3isy_A Bsupi, intracellular pr  41.1      12 0.00055   14.7   4.6   34  149-182     6-39  (120)
 20 1e9y_A Urease alpha subunit; h  40.6      13 0.00056   14.6   2.6   40  146-187   107-147 (238)
 21 3chx_A PMOB; membrane protein,  29.6     7.8 0.00035   15.9  -0.2   12  323-334   327-338 (392)
 22 2kl8_A OR15; structural genomi  23.8      25  0.0011   12.9   2.8   17  152-168    31-47  (85)

No 1  
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=100.00  E-value=0  Score=336.36  Aligned_cols=309  Identities=17%  Similarity=0.209  Sum_probs=245.3

Q ss_pred             EECCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCC-CCCCCCEEECCCCCEECCCEEEE
Q ss_conf             52088689999879-84999950148689999998898599963588443300027-63211347736886200886887
Q T0609            12 IIWSEHKCIRFAAG-GYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKN-RPQVYGLPVLFPPNRIDDGTFKL   89 (340)
Q Consensus        12 ~~~~g~~~v~l~n~-~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~G~pi~~p~~Ri~~g~f~~   89 (340)
                      .+....++|||+|+ +++|+|+ ++||+|++|+..+  .++++.+   +..++|.. ++.++|+.|+|+||||++|+|++
T Consensus       368 ~~~~~~~~~t~~n~~~~~v~~~-~~Ga~i~~~~~~~--~~vvlg~---~~~~~y~~~~~~y~Ga~iGr~anRI~~g~~~~  441 (699)
T 1z45_A          368 DMRYDARFVTIGAGTRFQATFA-NLGASIVDLKVNG--QSVVLGY---ENEEGYLNPDSAYIGATIGRYANRISKGKFSL  441 (699)
T ss_dssp             TTCTTSEEEEESTTSSEEEEEE-SBTTCEEEEEETT--EECBCCC---SSHHHHTCTTCCCTTCEECSBCSEEGGGEEEE
T ss_pred             CCCCCEEEEEEECCCCEEEEEE-ECCCEEEEECCCC--CEEEECC---CCHHHHCCCCCCEECCCCCCCCCEEECCEEEE
T ss_conf             5763127999944873699998-1685999967199--7888379---99899707899741867557668686889999


Q ss_pred             CCEEEEECCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEE--CCEEE
Q ss_conf             9978992356887766675665---775359997113678748999999678986213488459999999980--41899
Q T0609            90 GDKTYKFPINEAKNNNYIHGFI---KNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELS--SKGLK  164 (340)
Q Consensus        90 ~g~~y~l~~n~~~~~~~~HG~~---~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~--~~~L~  164 (340)
                      +|++|+|++|++  .+++||+.   ..+.|....... .+...++++|.+.+ +++-.||||+++++++|+|+  ++.|+
T Consensus       442 ~g~~y~l~~N~~--~~~lHGg~~g~~~~~w~~~~~~~-~~~~~~~~~~~~~~-~~~~~G~PG~l~~~v~y~l~~~~~~l~  517 (699)
T 1z45_A          442 CNKDYQLTVNNG--VNANHSSIGSFHRKRFLGPIIQN-PSKDVFTAEYMLID-NEKDTEFPGDLLVTIQYTVNVAQKSLE  517 (699)
T ss_dssp             TTEEEECCCCBT--TBEETTGGGCGGGSBCEEEEEEE-EETTEEEEEEEEEE-CGGGSSSSSEEEEEEEEEEETTTTEEE
T ss_pred             CCEEEEECCCCC--CCCCCCCCCCCCCEEEEEEEEEE-CCCCEEEEEEEEEC-CCCCCCCCCEEEEEEEEEEECCCCCEE
T ss_conf             999999278999--98778998888854886777750-78866999999888-988899880789999999966999179


Q ss_pred             EEEEEEECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf             9999994887031000013624760477776324505887034178627765667742377886233366774346--55
Q T0609           165 QTTSVVNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVA--SH  242 (340)
Q Consensus       165 i~~~v~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~--~~  242 (340)
                      +.++.++.+++++|+++++|+|||+.+..+.++.+|.|++++..++++|+.+||||++.++.++.+|+.... .++  ..
T Consensus       518 i~~~~~~~~d~~t~~n~tnH~YfNL~g~~~~~i~~h~l~i~a~~~~~~d~~~iPtG~~~~v~~t~~d~~~~~-~i~~~~~  596 (699)
T 1z45_A          518 IVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPT-VLGPKNP  596 (699)
T ss_dssp             EEEEEEEEESSEEECBCEECCEECTTTTSCSSSTTEEEEESCCEEEEECTTSCEEEEEEECSCCBTTSSSCE-EECSSCC
T ss_pred             EEEEEEECCCCCEEEECCCCCEECCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCE-ECCCCCC
T ss_conf             999997057752365514644172378877542442998467849740787775887040679998788860-3576688


Q ss_pred             CCCCEEECCCCC-------CCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC------CCCCEEEEECCCCCCCCC
Q ss_conf             324012045423-------4886632799971899839999985998868996488------668839994155888888
Q T0609           243 PIESLFSLKDID-------VNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM------GDKKYACIEPQTSIINSP  309 (340)
Q Consensus       243 ~~D~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~------g~~~~vciEP~t~~pda~  309 (340)
                      .+|++|......       ........+.+.++.+|+.|++.+++  |.+|+||..      ..+..||||||. +|||+
T Consensus       597 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~l~v~t~~--p~~~~yt~n~~~~~~~~~~g~~lE~q~-~pda~  673 (699)
T 1z45_A          597 QFDCCFVVDENAKPSQINTLNNELTLIVKAFHPDSNITLEVLSTE--PTYQFYTGDFLSAGYEARQGFAIEPGR-YIDAI  673 (699)
T ss_dssp             CCEEEEESCSSCCCCCSBCTTSCCEEEEEEEETTTTEEEEEEESS--SEEEEECCTTCCTTCCTTSCEEEEEES-CSSGG
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCEEEEECCC-CCCCC
T ss_conf             987228867987643334667872499999908989889999689--769996899889887998889982689-98866


Q ss_pred             CCCCCCCCCCCEEECCCCEEEEEEEEEE
Q ss_conf             8888776257689698977999999999
Q T0609           310 NVKLDRSVSGFKTLKPNESWSGVCKLYI  337 (340)
Q Consensus       310 n~~~~~~~~g~~~L~pGe~~~~~~~~~v  337 (340)
                      |++++++.   ++|+|||++...+.+.+
T Consensus       674 n~~~f~~~---i~l~~g~~y~~~t~y~F  698 (699)
T 1z45_A          674 NQENWKDC---VTLKNGETYGSKIVYRF  698 (699)
T ss_dssp             GCTTTGGG---GEEETTCEEEEEEEEEE
T ss_pred             CCCCCCCC---EECCCCCEEEEEEEEEE
T ss_conf             78689986---55399598988999997


No 2  
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Probab=100.00  E-value=0  Score=333.83  Aligned_cols=307  Identities=14%  Similarity=0.159  Sum_probs=237.1

Q ss_pred             EEEEEEEECCCEEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECC
Q ss_conf             027523520886899998798-4999950148689999998898599963588443300027632113477368862008
Q T0609             6 LWIKEEIIWSEHKCIRFAAGG-YEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDD   84 (340)
Q Consensus         6 ~~~~~~~~~~g~~~v~l~n~~-~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~   84 (340)
                      |=|+-+...++.++|||+|+. ++++|+ ++||+|++++..  +.++++.++   ..++|..++.+.|+.|+|+||||++
T Consensus         1 m~i~~~~~g~~~~~~tL~N~~g~~v~i~-~~GA~i~~~~~~--~~~vvlg~~---~~~~y~~~~~~~Ga~iGr~anRI~~   74 (347)
T 1nsx_A            1 MSIKIRDFGLGSDLISLTNKAGVTISFT-NLGARIVDWQKD--GKHLILGFD---SAKEYLEKDAYPGATVGPTAGRIKD   74 (347)
T ss_dssp             -CEEEEEEETTEEEEEEECTTSCEEEEE-TBTTEEEEEEET--TEESBCCCS---SHHHHHHTCSCTTCEECSBCSEEGG
T ss_pred             CCEEEECCCCCCEEEEEECCCCCEEEEE-CCCEEEEEECCC--CCEEEECCC---CHHHHHHCCCCCCCEECCCCCCCCC
T ss_conf             9437701798426999995998399997-988699970369--975896699---9899831788527571451671138


Q ss_pred             CEEEECCEEEEECCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf             868879978992356887766675665---77535999711367874899999967898621348845999999998041
Q T0609            85 GTFKLGDKTYKFPINEAKNNNYIHGFI---KNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK  161 (340)
Q Consensus        85 g~f~~~g~~y~l~~n~~~~~~~~HG~~---~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~  161 (340)
                      |+|+++|+.|+|++|++  ++++||+.   ..+.|++.... +.+..+|++++...+.+   .+||++++++++|+|+++
T Consensus        75 g~f~~~G~~y~L~~Ne~--~~~lHGG~~g~~~~~w~~~~~~-~~~~~~v~~~~~~~dg~---~GyPg~~~~~vtY~L~~~  148 (347)
T 1nsx_A           75 GLVKISGKDYILNQNEG--PQTLHGGEESIHTKLWTYEVTD-LGAEVQVKFSLVSNDGT---NGYPGKIEMSVTHSFDDD  148 (347)
T ss_dssp             GEEEETTEEEECCCCBT--TBEETTSTTCGGGSBCEEEEEE-CSSEEEEEEEEEECTTG---GGCCSCEEEEEEEEEETT
T ss_pred             CEEEECCEEEEECCCCC--CCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEEEEECCCC---CCCCEEEEEEEEEEECCC
T ss_conf             80408998999147889--8755788655576002467652-78843899999968987---887578999999996459


Q ss_pred             -EEEEEEEEEECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -899999999488703100001362476047777632450588703417862-776566774237788623336677434
Q T0609           162 -GLKQTTSVVNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQ-DSRNLPTGESFAPTGEQKEYLENGVAV  239 (340)
Q Consensus       162 -~L~i~~~v~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~-d~~~lptg~~~~~~~~~~~~~~~~~~~  239 (340)
                       .|+++++  |.+++++|+++++|+|||+++....++.+++|++++.+++++ |+..||||++.++.++.+||.......
T Consensus       149 ~~l~i~~~--a~s~~~tp~nlt~H~YFnL~g~~~~~i~~h~L~i~a~~~l~~~D~~~iPtG~~~~v~~t~~Dfr~~~~i~  226 (347)
T 1nsx_A          149 NKWKIHYE--AISDKDTVFNPTGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLS  226 (347)
T ss_dssp             SEEEEEEE--EEESSCEECBCEECCEECTTSSTTSCGGGSEEEECEEEECCBCSTTCCBCSCCEECTTSTTCCSSCEEHH
T ss_pred             CEEEEEEE--EECCCCEEEECCCCCCEECCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             84899999--7437754764065250644775567520079998037589962788776782554779986566772845


Q ss_pred             C-----------CCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC-------------CCCC
Q ss_conf             6-----------553240120454234886632799971899839999985998868996488-------------6688
Q T0609           240 A-----------SHPIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM-------------GDKK  295 (340)
Q Consensus       240 ~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-------------g~~~  295 (340)
                      .           ...+|++|.+.....   ....+.+..  ++++|++..+  .|.+++||..             ....
T Consensus       227 ~~~~~~~~~~~~~~G~D~~f~l~~~~~---~~~~~~l~~--~~~~l~v~T~--~p~~qvYT~n~l~~~~~~~~~~~~~~~  299 (347)
T 1nsx_A          227 NAFNSNMEQVQLVKGIDHPFLLDQLGL---DKEQARLTL--DDTSISVFTD--QPSIVIFTANFGDLGTLYHEKKQVHHG  299 (347)
T ss_dssp             HHHHCCCHHHHHHTSCEEEEEESSCBT---TSCCEEEEE--TTEEEEEEES--SSEEEEECCCCTTCCCEETTEECCTTC
T ss_pred             HHHHCCHHHHCCCCCCCCCEEECCCCC---CCCEEEEEE--CCCEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             424120244113578886347456778---730389974--8960899938--997999907767765567887678778


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEE
Q ss_conf             3999415588888888887762576896989779999999998
Q T0609           296 YACIEPQTSIINSPNVKLDRSVSGFKTLKPNESWSGVCKLYIE  338 (340)
Q Consensus       296 ~vciEP~t~~pda~n~~~~~~~~g~~~L~pGe~~~~~~~~~ve  338 (340)
                      .|||||| .+|||+|++++++    ++|+|||++..++.+++.
T Consensus       300 giclEpq-~~Pda~N~~~f~~----i~L~pge~y~~~t~Y~f~  337 (347)
T 1nsx_A          300 GITFECQ-VSPGSEQIPELGD----ISLKAGEKYQATTIYSLH  337 (347)
T ss_dssp             CEECEEE-SCTTTTTCGGGCC----CEECTTCEEEEEEEEEEE
T ss_pred             EEEEECC-CCCCCCCCCCCCC----EEECCCCEEEEEEEEEEE
T ss_conf             9999557-8998657778998----089999999889999999


No 3  
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=100.00  E-value=0  Score=329.30  Aligned_cols=289  Identities=19%  Similarity=0.305  Sum_probs=219.3

Q ss_pred             EEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEEEEEC
Q ss_conf             999987984999950148689999998898599963588443300027632113477368-8620088688799789923
Q T0609            19 CIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKTYKFP   97 (340)
Q Consensus        19 ~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~y~l~   97 (340)
                      .++|+|+.++|+|+ ++||+|+||+++..+.++|+..+...         ..++.|+||| +|||++|+|.++|+.|+++
T Consensus         2 ~~tleN~~l~v~v~-~~Ga~l~s~~~~~~~~e~L~~~~~~~---------~~~~~p~l~P~~gRi~~g~~~~~g~~~~l~   71 (307)
T 3dcd_A            2 DYTIENNMIKVVIS-DHGAEIQSVKSAHTDEEFMWQANPEI---------WGRHAPVLFPIVGRLKNDEYTYKGKTYHLG   71 (307)
T ss_dssp             EEEEECSSEEEEEE-TBTTEEEEEEETTTCCBCBCCCCTTT---------CCCSSCEEBSCSSCCGGGEEEETTEEEECC
T ss_pred             EEEEECCCEEEEEE-CCCCEEEEEEECCCCEEEEECCCHHH---------HCCCCCEEEEECCCCCCCEEEECCCEEEEC
T ss_conf             89999699999997-56979999997999968897388688---------378996899882641899076779798566


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCHHH
Q ss_conf             56887766675665775359997113678748999999678986213488459999999980418999999994887031
Q T0609            98 INEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSEEM  177 (340)
Q Consensus        98 ~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~~~  177 (340)
                               +|||+|+++|++.+.+++    +++  +.+..++++..+|||+++++++|+|++++|+++++++|.+++++
T Consensus        72 ---------~HG~~~~~~w~v~~~~~~----~~~--l~l~~~~~~~~~~P~~~~l~~~~~L~~~~L~i~~~v~N~~~~~~  136 (307)
T 3dcd_A           72 ---------QHGFARNADFEVENHTKE----SIT--FLLKDNEETRKVYPFKFEFRVNYNLMNNLLEENFSVVNKSDETM  136 (307)
T ss_dssp             ---------TTBSGGGSBCEEEEEETT----EEE--EEEECCHHHHHHSCCCEEEEEEEEEETTEEEEEEEEEECSSSCE
T ss_pred             ---------CCCCCCCCCEEEEECCCC----EEE--EEECCCHHHHCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCE
T ss_conf             ---------679957852699982798----179--99704824620599876999999962564899999993888637


Q ss_pred             EECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             00001362476047777632450588703417862776566774237788623336677434655324012045423488
Q T0609           178 PLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLKDIDVNG  257 (340)
Q Consensus       178 p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  257 (340)
                      ||++++||||++++..+....++.+....  ....+...+|++..........+.. ....+....+++......   ..
T Consensus       137 p~~~g~HpYF~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~---~~  210 (307)
T 3dcd_A          137 IFGVGGHPGFNLPTDHGENKEDFYFDMHP--SVTRVRIPLKDASLDWNNRSLAPTD-SLIALSDDLFKDDALIYE---LR  210 (307)
T ss_dssp             EECEEECCEEECCCTTSCCGGGEEEEEES--CCCEEECCEETTEECGGGCEEECTT-SCEECCSGGGTTSCEEEE---CC
T ss_pred             EEEEECCEEEECCCCCCCEEEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCEEEEE---CC
T ss_conf             88405240585586557200038998145--6521211368773035667305667-604414543256549994---48


Q ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC-CCCEEEEECCCCCCCCCCCCCC-CCCCCCEEECCCCEEEEEEEE
Q ss_conf             66327999718998399999859988689964886-6883999415588888888887-762576896989779999999
Q T0609           258 KTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMG-DKKYACIEPQTSIINSPNVKLD-RSVSGFKTLKPNESWSGVCKL  335 (340)
Q Consensus       258 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g-~~~~vciEP~t~~pda~n~~~~-~~~~g~~~L~pGe~~~~~~~~  335 (340)
                      .....+.+.++..+..+.+... +++++++|++.. .++||||||||++|||+|.+.. .++.|++.|+|||+++.+++|
T Consensus       211 ~~~~~~~l~~~~~~~~l~~~~~-~~p~~~vwt~~~~~~~~vcvEP~t~~~da~n~~~~~~~~~g~~~L~pge~~~~~~~i  289 (307)
T 3dcd_A          211 GNDNKVSLRTDKNKFHVNVWTR-DAPFVGIWSQYPKTDNYVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSM  289 (307)
T ss_dssp             SSCEEEEEEETTSSCEEEEEEE-TCSEEEEECCSSSCCSEEEEEEEESCCCBTTCCSBGGGCTTCEEECTTCEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEE
T ss_conf             9861899996899829999848-999799989999999899991447899856773200127798898999999999999


Q ss_pred             EEEE
Q ss_conf             9985
Q T0609           336 YIEN  339 (340)
Q Consensus       336 ~ve~  339 (340)
                      ++++
T Consensus       290 t~~~  293 (307)
T 3dcd_A          290 TYHS  293 (307)
T ss_dssp             EEEC
T ss_pred             EEEC
T ss_conf             9986


No 4  
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4
Probab=100.00  E-value=0  Score=329.19  Aligned_cols=300  Identities=15%  Similarity=0.212  Sum_probs=236.4

Q ss_pred             CEEEEEEECCC-EEEEEECCCCCEEEEEEECCCC---EEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECC
Q ss_conf             86899998798-4999950148689999998898---5999635884433000276321134773688620088688799
Q T0609            16 EHKCIRFAAGG-YEALIIPDVGGNVVELKDTNKG---VTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGD   91 (340)
Q Consensus        16 g~~~v~l~n~~-~~~~i~p~~Ga~i~sl~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g   91 (340)
                      +-.+|+|+|+. ++|+|+ ++||+|.+|++..+.   .++++.++   ..++|..++.++|+.|+|+||||++|+|+++|
T Consensus        11 ~~~~i~l~N~~g~~v~i~-~~GA~i~~~~vpd~~G~~~~vvlg~~---~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G   86 (339)
T 1lur_A           11 ASGFIEIANKQGLTATLL-PFGATLAKLTFPDKNGKNQDLVLGFD---TIDEFEKDAASIGKTVGRVANRIKNSTLHFDG   86 (339)
T ss_dssp             CCCCEEEECSSSCEEEEE-TBTTEEEEEEEECTTSCEEECBCCCS---SHHHHHHCSSCTTCEECSBCSEEGGGEEEETT
T ss_pred             CCCEEEEECCCCCEEEEE-CCCCEEEEEEEECCCCCEEEEEECCC---CHHHHHHCCCCCCCEECCCCCEEECCEEEECC
T ss_conf             575699996999599998-96929999998888898814288899---98999538886065887736857898898999


Q ss_pred             EEEEECCCCCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC-EEEEEE
Q ss_conf             78992356887766675665---77535999711367874899999967898621348845999999998041-899999
Q T0609            92 KTYKFPINEAKNNNYIHGFI---KNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK-GLKQTT  167 (340)
Q Consensus        92 ~~y~l~~n~~~~~~~~HG~~---~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~-~L~i~~  167 (340)
                      ++|+|++|++  ++++||+.   +.+.|++++...    .+|++++...+.   -.+||+++.++++|+|+++ .|.+++
T Consensus        87 ~~y~L~~Ne~--~n~lHGg~~g~~~~~W~v~~~~~----~~v~l~~~~~~g---~~GyPg~l~~~vtY~L~~~~~l~i~~  157 (339)
T 1lur_A           87 KQYTMTPNNG--PHYLHGGPNGLGYRKWEVVRHAP----ESVSFSVRANEQ---DDGLPGDAKIDVTYTVNDRNQLIIEH  157 (339)
T ss_dssp             EEEECCCSBT--TBEETTCTTSGGGSBCEEEEEET----TEEEEEEEEEHH---HHSSSSEEEEEEEEEECTTSEEEEEE
T ss_pred             EEEEECCCCC--CCCCCCCCCCCCEECCEEEEECC----CCEEEEEECCCC---CCCCCCEEEEEEEEEECCCCEEEEEE
T ss_conf             9999148999--85558887763135211477058----722999981787---67877448999999965698699999


Q ss_pred             EEEECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf             999488703100001362476047777632450588703417862776566774237788623336677434655-----
Q T0609           168 SVVNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASH-----  242 (340)
Q Consensus       168 ~v~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~-----  242 (340)
                      +.  .+++++|+++++|+|||++.  ..++.++.|++++++++++|++.||||++..+.++.+||... ..+...     
T Consensus       158 ~a--~~d~~tp~nlt~H~YFNL~g--~~~i~~h~L~i~a~~~l~~D~~~iPtG~~~~v~~t~~Dfr~~-~~l~~~~~d~~  232 (339)
T 1lur_A          158 HA--TCDTPGLLALTNHAYWNLDG--SDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSG-KQLKESGKDAE  232 (339)
T ss_dssp             EE--ECSSCEECBCEECCEECSSC--CSCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTC-EETTCSCCCSS
T ss_pred             EE--ECCCCCEEEECCCCCCCCCC--CCCCCCEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCC
T ss_conf             97--55987057851544132578--877677399986685887585552067546346887655586-30575322434


Q ss_pred             ---CCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC------------CCCCEEEEECCCCCCC
Q ss_conf             ---3240120454234886632799971899839999985998868996488------------6688399941558888
Q T0609           243 ---PIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM------------GDKKYACIEPQTSIIN  307 (340)
Q Consensus       243 ---~~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~------------g~~~~vciEP~t~~pd  307 (340)
                         ..|++|..............+.+.++.+|++|.+..+  .|.+++|+..            ..+..||||||+ +||
T Consensus       233 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~sg~~l~v~t~--~p~~qvYT~n~l~~~~~~g~~~~~~~gi~lEpq~-~Pd  309 (339)
T 1lur_A          233 ELLDLDNDLVITKKTPPSTPSTYLRFWSEKSGIELSITTS--YPVIHLYASKFLDCKGKKGEHYKANKALAIEPQF-HSA  309 (339)
T ss_dssp             CCCCCEEEEEECCCCC----CCCEEEECTTTCEEEEEEES--SSEEEEECCTTCCEECGGGCEECTTCCEEEEEES-CTT
T ss_pred             EEEECCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECC--CCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC-CCC
T ss_conf             0360278679843789877516999963998859999679--9889996898777778788796888889995469-998


Q ss_pred             CCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEC
Q ss_conf             888888776257689698977999999999859
Q T0609           308 SPNVKLDRSVSGFKTLKPNESWSGVCKLYIENM  340 (340)
Q Consensus       308 a~n~~~~~~~~g~~~L~pGe~~~~~~~~~ve~~  340 (340)
                      |+|++++++    ++|+|||+++.++.+++.++
T Consensus       310 A~N~~~f~~----~iL~pge~y~~~t~Y~Fs~~  338 (339)
T 1lur_A          310 APNFDHFPD----VSLRPGDHYCQEIVYTFSHV  338 (339)
T ss_dssp             GGGCTTSCC----CEECTTCCEEEEEEEEEEEC
T ss_pred             CCCCCCCCC----EEECCCCEEEEEEEEEEECC
T ss_conf             556778998----08999999988999998717


No 5  
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}
Probab=100.00  E-value=0  Score=324.63  Aligned_cols=312  Identities=16%  Similarity=0.185  Sum_probs=236.0

Q ss_pred             CCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCEE
Q ss_conf             88689999879-84999950148689999998898599963588443300027632113477368862008868879978
Q T0609            15 SEHKCIRFAAG-GYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKT   93 (340)
Q Consensus        15 ~g~~~v~l~n~-~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~~   93 (340)
                      +.++.|||+|+ +++|+|+ .+||.|++|+++  +.++++.++   ..+.|..++.++|+.|+|+||||++|+|+++|++
T Consensus         8 ~~~~~itl~n~~~~~~~i~-~~GA~i~~l~~~--~~~vvlg~~---~~~~Y~~~~~~~Ga~iGr~ANRI~~g~f~~~G~~   81 (342)
T 1yga_A            8 NKYGVITIGDEKKFQATIA-PLGATLVDLKVN--GQSVVQGYS---NVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGP   81 (342)
T ss_dssp             CTTCCEEEEETTTEEEEEE-TBTTEEEEEEET--TEECBCCCS---SGGGGTTCSSCTTCEECSBCSEEGGGEEEETTEE
T ss_pred             CEEEEEEEECCCCEEEEEE-CCCEEEEEEEEC--CEEEEECCC---CHHHHHCCCCCCCCEECCCCCEEECCEEEECCEE
T ss_conf             6599999978996699998-779099999999--958894799---9899811898165284455574768899999999


Q ss_pred             EEECCCCCCCCCCCCCCCC-CCCEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEC--CEEEEEEEE
Q ss_conf             9923568877666756657-75359997113-6787489999996789862134884599999999804--189999999
Q T0609            94 YKFPINEAKNNNYIHGFIK-NSKWTVHKKKI-DQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSS--KGLKQTTSV  169 (340)
Q Consensus        94 y~l~~n~~~~~~~~HG~~~-~~~W~v~~~~~-~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~--~~L~i~~~v  169 (340)
                      |||++|++.+.+|.|+..+ .+.|.+..... +....++++++....++++.++||++++++++|+|++  .+|++++++
T Consensus        82 y~L~~Ne~~~~lhgg~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~GfPg~~~~~v~y~L~~~~~~L~i~~~~  161 (342)
T 1yga_A           82 HKLTVNNCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQA  161 (342)
T ss_dssp             EECCCCBTTBEETTGGGCGGGSBCEECCCEEEETTEEEEEEEEEECSSSSSCCCSSSEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf             99267889873442469977268889996427874599999993046788657821689999999992267623789999


Q ss_pred             EECCCHHHEECCCCCCEEECCCCC-CCCCCCEEEEEECCCEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             948870310000136247604777-763245058870341786277-656677423778862333667743465-53240
Q T0609           170 VNLSSEEMPLSVGYHSAFNVPFIE-GSEDSNCRVKISIDKFWKQDS-RNLPTGESFAPTGEQKEYLENGVAVAS-HPIES  246 (340)
Q Consensus       170 ~N~~~~~~p~~~~~H~YF~~~~~~-~~~~~~~~l~~~~~~~~~~d~-~~lptg~~~~~~~~~~~~~~~~~~~~~-~~~D~  246 (340)
                      +|.+++++|+++++|+|||+++.. ...+.++.|++++.+++++++ ..+|||+...+....+++......... ..+|+
T Consensus       162 ~n~~~~~tp~nlt~H~YFnL~g~~~~~~i~~~~l~~~a~~~~~~~d~~~~ptg~~~~~~~t~fd~~~~~~~~~~~~~~~~  241 (342)
T 1yga_A          162 QLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLHEDTPVFDC  241 (342)
T ss_dssp             EEEESSEEECBCEECCCBCTTTTTCTTCCTTEEEEESCCEEEEECTTTCCEEEEEEECSCCBTTCSSCEEECSSCCCCEE
T ss_pred             ECCCCCCCEEEECCCCEECCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             63668774688336445855676655750125899815848980576788742143014764223464102222221101


Q ss_pred             EEECCC------CC--CCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC------CCCCEEEEECCCCCCCCCCCC
Q ss_conf             120454------23--4886632799971899839999985998868996488------668839994155888888888
Q T0609           247 LFSLKD------ID--VNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM------GDKKYACIEPQTSIINSPNVK  312 (340)
Q Consensus       247 ~~~~~~------~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~------g~~~~vciEP~t~~pda~n~~  312 (340)
                      .+....      ..  .......++.+.++.+|++|.+..++  |.+|+||..      ..+.+||||||+ +|||+|++
T Consensus       242 ~~~~d~~~~~~~~~~~~~~~~~~~a~l~~~~sg~~l~v~t~~--p~~qvYT~n~l~~~~~~~~giclEpq~-~pda~N~~  318 (342)
T 1yga_A          242 TFIIDANKDLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTE--PTVHLYTGDNLCGKFVPRSGFAVQQGR-YVDAINRD  318 (342)
T ss_dssp             EEECTTTTTCCSSBCTTTSCCEEEEEEECTTTCCEEEEEESS--SEEEEECCTTCCTTSCTTSCBEEEEES-CSSGGGCH
T ss_pred             CEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC--CEEEEECCCCCCCCCCCCCEEEEECCC-CCCCCCCC
T ss_conf             352148866431336676763589999948998099999289--989998288789976897799997998-98976674


Q ss_pred             CCCCCCCCEEECCCCEEEEEEEEEEE
Q ss_conf             87762576896989779999999998
Q T0609           313 LDRSVSGFKTLKPNESWSGVCKLYIE  338 (340)
Q Consensus       313 ~~~~~~g~~~L~pGe~~~~~~~~~ve  338 (340)
                      .++   ++++|+|||+++.++++.++
T Consensus       319 ~~~---~~i~L~pge~y~~~t~y~F~  341 (342)
T 1yga_A          319 EWR---GCVLLKRGEVYTSKTQYKFD  341 (342)
T ss_dssp             HHH---GGGEEETTCCEEEEEEEEEE
T ss_pred             CCC---CCEEECCCCEEEEEEEEEEE
T ss_conf             799---98588998989889999997


No 6  
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=100.00  E-value=0  Score=322.01  Aligned_cols=272  Identities=21%  Similarity=0.389  Sum_probs=210.3

Q ss_pred             EEEEECC--CEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEEEE
Q ss_conf             9999879--84999950148689999998898599963588443300027632113477368-86200886887997899
Q T0609            19 CIRFAAG--GYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKTYK   95 (340)
Q Consensus        19 ~v~l~n~--~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~y~   95 (340)
                      +|.|+|+  .++++|+|++||.|+||+.  .|.++|+.....   ......+.++|+|+||| +|||++|+|.++|+.|+
T Consensus        13 t~~l~~~~~~~~v~v~P~~Ga~i~s~~~--~g~e~L~~~~~~---~~~~~~~~~gG~p~lfP~~gRi~~g~~~~~g~~~~   87 (289)
T 3k25_A           13 TYHLEDDQSLARLSLVPGRGGLVTEWTV--QGQPILYFDRER---FQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYR   87 (289)
T ss_dssp             EEEEEETTTTEEEEEEGGGTSEEEEEEE--TTEECBCBCTTG---GGSTTSCCCBSBCEEBSCSSCCGGGEEEETTEEEE
T ss_pred             EEEEECCCCCEEEEECCCCCCEEEEEEE--CCEEEECCCCHH---HCCCCCCCCCCCCEEEEEECCCCCCEEEECCEEEE
T ss_conf             9999928982899987237989999998--999998559378---62677753788818887848058994848997962


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCH
Q ss_conf             23568877666756657753599971136787489999996789862134884599999999804189999999948870
Q T0609            96 FPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSE  175 (340)
Q Consensus        96 l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~  175 (340)
                      +         ++||++|+.+|++.+..... ...  +.+.+..++++..+||+.++++++|+|++++|+++++++|.+++
T Consensus        88 l---------~~HG~~~~~~w~~~~~~~~~-~~~--~~~~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~~~~~v~N~~~~  155 (289)
T 3k25_A           88 L---------KQHGFARDLPWEVIGQQTQD-NAR--LDLRLSHNDATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQ  155 (289)
T ss_dssp             C---------CTTBSGGGSCCEEEEEECSS-SEE--EEEEEECCHHHHTTSCSCEEEEEEEEEETTEEEEEEEEEECSSS
T ss_pred             C---------CCCCCCCCCCCEEEEEECCC-CCE--EEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf             5---------77855157751677863178-826--89999647230024998569999999927726999999827997


Q ss_pred             HHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             31000013624760477776324505887034178627765667742377886233366774346553240120454234
Q T0609           176 EMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLKDIDV  255 (340)
Q Consensus       176 ~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~  255 (340)
                      ++||++|+||||+++..     ..+++.++...+..  ....+...           ......+....+|+.+....   
T Consensus       156 ~~p~~~g~HpyF~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~---  214 (289)
T 3k25_A          156 RMPFSLGFHPYFFCREK-----LGITLAIPANDYLD--QKTGDCHG-----------YDGQLNLTSPELDLAFTQIS---  214 (289)
T ss_dssp             CEEECCEECCEEECSCC-----TTCEEECSCSEEEE--TTTCCEEE-----------CCSCCCTTSSEEEEEECCCS---
T ss_pred             CEEEEEEECCEECCCCC-----EEEEEEECCCCEEC--CCCCCCCC-----------CCCCEECCCCCCCEEEEECC---
T ss_conf             77999782754725873-----04899745752022--45587435-----------57740105654410343068---


Q ss_pred             CCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEE
Q ss_conf             88663279997189983999998599886899648866883999415588888888887762576896989779999999
Q T0609           256 NGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMGDKKYACIEPQTSIINSPNVKLDRSVSGFKTLKPNESWSGVCKL  335 (340)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g~~~~vciEP~t~~pda~n~~~~~~~~g~~~L~pGe~~~~~~~~  335 (340)
                          .....+.++..+.++.+..++.++++++|++.+ ++|||||||+++|||+|.+     .++++|+|||+++.+++|
T Consensus       215 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vwtp~~-~~~vciEP~t~~~da~n~~-----~~l~~L~PGe~~~~~~~~  284 (289)
T 3k25_A          215 ----QPRAHFIDPDRNLKIEVSFSELYQTLVLWTVAG-KDYLCLEPWSGPRNALNSG-----EQLAWVEPYSSRSAWVNF  284 (289)
T ss_dssp             ----SSEEEEEETTTTEEEEEEECTTCCEEEEEEESS-SCEEEEEEESSCTTHHHHC-----TTCEEECTTEEEEEEEEE
T ss_pred             ----CCCEEEEECCCCCEEEEEECCCCCEEEEECCCC-CCEEEEECCCCCCCCCCCC-----CCCEEECCCCEEEEEEEE
T ss_conf             ----982278816898189999889998799927899-9899993748899855489-----998898999919999999


Q ss_pred             EEE
Q ss_conf             998
Q T0609           336 YIE  338 (340)
Q Consensus       336 ~ve  338 (340)
                      +|.
T Consensus       285 ~v~  287 (289)
T 3k25_A          285 QVS  287 (289)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999


No 7  
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm}
Probab=100.00  E-value=0  Score=317.56  Aligned_cols=291  Identities=17%  Similarity=0.241  Sum_probs=224.1

Q ss_pred             CCEEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCEE
Q ss_conf             886899998798-4999950148689999998898599963588443300027632113477368862008868879978
Q T0609            15 SEHKCIRFAAGG-YEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKT   93 (340)
Q Consensus        15 ~g~~~v~l~n~~-~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~~   93 (340)
                      ...+.|+|+|+. ++|+|+ ++||+|.+|+.+  +.++++.++   ..+.|..++.++|+.++|+||||++|+|+++|+.
T Consensus        16 ~~v~~itl~N~~g~~v~i~-~~GA~i~~~~~~--~~~vvlg~d---~~~~y~~~~~~~Ga~~Gp~anRI~~g~f~~~G~~   89 (338)
T 3imh_A           16 KDLCEITLENDAGMAVKVL-NYGATLEKVLLD--GENMILSLN---SPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNEI   89 (338)
T ss_dssp             EEEEEEEEECSSSEEEEEE-TBTTEEEEEEET--TEECBCCCS---SGGGGGTSCCCTTCEECSBCSEEGGGEEEETTEE
T ss_pred             EEEEEEEEECCCCCEEEEE-CCCCEEEEEEEC--CEEEEECCC---CHHHHHHCCCCCCCCCCCCCCEEECCEEEECCEE
T ss_conf             8999999996998399998-759199999989--912885289---9899842888468680675884558899889999


Q ss_pred             EEECCCCCCCCCCCCCCC-C-CCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEE
Q ss_conf             992356887766675665-7-75359997113678748999999678986213488459999999980418999999994
Q T0609            94 YKFPINEAKNNNYIHGFI-K-NSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVN  171 (340)
Q Consensus        94 y~l~~n~~~~~~~~HG~~-~-~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N  171 (340)
                      |+|++|++.  +++||+. + .+.|.+... .+.+.++|++++...+.   ..+||++++++++|+|+++. +++++++|
T Consensus        90 y~L~~Ne~~--~~~HGg~g~~~~~~~~~~~-~~~~~~~v~l~~~~~~g---~~GyPg~~~~~vtY~L~~~~-~l~i~~~~  162 (338)
T 3imh_A           90 HQLPLNDGD--NHIHGGIGTDMHVWDFRPS-CDSEHARVDLTLFDPDG---NNDYPGNLKLHARYELDNEN-NLHYLLEA  162 (338)
T ss_dssp             EECCCCBTT--BEETTSSCGGGSBCEEEEE-ECSSEEEEEEEEEECTT---GGGCCSCEEEEEEEEEETTS-EEEEEEEE
T ss_pred             EECCCCCCC--CCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEECCCC---CCCCCEEEEEEEEEEEECCC-EEEEEEEE
T ss_conf             966688997--6658985568750578887-14776489999974886---78998789999999991388-59999997


Q ss_pred             CCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf             887031000013624760477776324505887034178627765667742377886233366774346-----------
Q T0609           172 LSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVA-----------  240 (340)
Q Consensus       172 ~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~-----------  240 (340)
                      .+++++|+++++|||||++    ..+.+++|++++++++++|++.+|||+...+.++.+||........           
T Consensus       163 ~~~~~tp~~l~~HpYFnL~----~~~~d~~L~i~a~~~l~~D~~~iPtG~~~~~~~t~~DFr~~~~i~~~~~~~~~~~~~  238 (338)
T 3imh_A          163 VSDKLTIFNPVNHTYFNLG----ERAEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKL  238 (338)
T ss_dssp             EESSSEECBCEECCEECTT----SCGGGCEEEECEEEECCBCTTSSBSSCCEECTTSTTCCSSCEEHHHHHTSCCHHHHH
T ss_pred             ECCCCCCEECCCCCEEECC----CCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCC
T ss_conf             1476441022544789888----764001565335659984754565787113679733144862213223143011112


Q ss_pred             CCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC-----------CCCCEEEEECCCCCCCCC
Q ss_conf             553240120454234886632799971899839999985998868996488-----------668839994155888888
Q T0609           241 SHPIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM-----------GDKKYACIEPQTSIINSP  309 (340)
Q Consensus       241 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-----------g~~~~vciEP~t~~pda~  309 (340)
                      ...+|++|.+...      ...+++.  .++++|++..+  .|.+++|+..           +....|||||| ++|||+
T Consensus       239 ~~G~D~~fvl~~~------~~~a~l~--~~g~~l~v~td--~p~~qvYT~~~l~~~~~~~~~~~~~giclEpq-~~Pda~  307 (338)
T 3imh_A          239 RNGLDHPFILNGN------NPAALLS--SNKHRLIVKTN--APALVLYAGNHFNHTGIVNNIGQYDGITFEAQ-CPPAEG  307 (338)
T ss_dssp             HTSCEEEEEECSC------SCSEEEE--CSSEEEEEEES--SSEEEEECCTTCCSBTTBTTCCTTSCEECEEE-SCCCSS
T ss_pred             CCCCCCCEECCCC------CCEEEEE--CCCCEEEEEEC--CCEEEEECCCCCCCCCCCCCCCCCCEEEEECC-CCCCCC
T ss_conf             5688742674799------7489996--58828999978--99899988887787666788897078999443-799986


Q ss_pred             CCCCCCCCCCCEEECCCCEEEEEEEEEEEE
Q ss_conf             888877625768969897799999999985
Q T0609           310 NVKLDRSVSGFKTLKPNESWSGVCKLYIEN  339 (340)
Q Consensus       310 n~~~~~~~~g~~~L~pGe~~~~~~~~~ve~  339 (340)
                      |.  +++    ++|+|||+++.+++++++.
T Consensus       308 N~--~~~----ivL~pge~y~~~t~y~F~~  331 (338)
T 3imh_A          308 ND--LGQ----ITLLPFEKFKRTVDWKFEE  331 (338)
T ss_dssp             SC--CGG----GEECTTCCEEEEEEEEEEE
T ss_pred             CC--CCC----EEECCCCEEEEEEEEEEEC
T ss_conf             65--898----1898999998999999807


No 8  
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Probab=100.00  E-value=0  Score=309.23  Aligned_cols=299  Identities=17%  Similarity=0.144  Sum_probs=232.7

Q ss_pred             CEEEEEEECCCEEEEEECCCCCEEEEEEECCCC---EEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCE
Q ss_conf             868999987984999950148689999998898---59996358844330002763211347736886200886887997
Q T0609            16 EHKCIRFAAGGYEALIIPDVGGNVVELKDTNKG---VTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDK   92 (340)
Q Consensus        16 g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~   92 (340)
                      ..+.|+|+|+.++++|+ ++||+|++|++..++   .++++.+   ...+.|..++.+.|+.++|+||||++|+|.++|+
T Consensus        20 ~v~~~tl~n~~~~v~i~-~~GA~i~~l~~~~~~G~~~~vvlg~---~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~   95 (344)
T 1snz_A           20 TVEKFQLQSDLLRVDII-SWGCTITALEVKDRQGRASDVVLGF---AELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGK   95 (344)
T ss_dssp             EEEEEEEECSSCEEEEE-TBTTEEEEEEEECTTSCEEECBCCC---SSHHHHHSSCSCTTCEECSBCSEEGGGEEEETTE
T ss_pred             EEEEEEEECCCEEEEEE-CCCCEEEEEEEECCCCCEEEEEECC---CCHHHHHHCCCCCCCEEEEECCCEECCEEEECCE
T ss_conf             89999998799999997-7590999999888899887727789---9989994278866878652788259998998999


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC
Q ss_conf             89923568877666756657753599971136787489999996789862134884599999999804189999999948
Q T0609            93 TYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNL  172 (340)
Q Consensus        93 ~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~  172 (340)
                      +|+|+.|++...++.|++.+.+.|...+...    .++++.+...+   ...+|||+++++++|+|+++.+.++++++  
T Consensus        96 ~y~l~~n~~~~~~~g~~~~~~~~~~~~~~~~----~~v~~~~~~~~---~~~g~Pg~~~~~v~y~l~~~~~~~~~~~~--  166 (344)
T 1snz_A           96 EYHLAINKEPNSLHGGVRGFDKVLWTPRVLS----NGVQFSRISPD---GEEGYPGELKVWVTYTLDGGELIVNYRAQ--  166 (344)
T ss_dssp             EEECCCTBTTBEETTSSSCGGGSBCEEEEET----TEEEEEEEECT---TGGGCCSCEEEEEEEEEETTEEEEEEEEE--
T ss_pred             EEECCCCCCCCCCCCCCCCCEEEEEEECCCC----CEEEEEEEECC---CCCCCCCCEEEEEEEEECCCCEEEEEECC--
T ss_conf             9981678898643357886026898831544----26999998067---76898741558999990488237788415--


Q ss_pred             CCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCC
Q ss_conf             8703100001362476047777632450588703417862776566774237788623336677434------6553240
Q T0609           173 SSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAV------ASHPIES  246 (340)
Q Consensus       173 ~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~------~~~~~D~  246 (340)
                      +++++|+++++|+||+++......+.++.+++++..++++|++.+|||....+.+..+|+.......      .....|+
T Consensus       167 ~~~~tp~~~~~h~yfnl~~~~~~~i~~~~l~i~a~~~~~~d~~~iptg~~~~~~~~~~Df~~~~~i~~~~~~~~~~~~d~  246 (344)
T 1snz_A          167 ASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDH  246 (344)
T ss_dssp             ESSCEECBCEECCCBCTTCTTCSCCTTCEEEECEEEECCBCTTSCBCSCCEECTTSTTCCSSCEEHHHHHHHTTCCCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCEECCCCCCCCCCCCCCC
T ss_conf             78786632224203234755445200111000304499877645756764356688303107744352100023321255


Q ss_pred             EEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC--------------CCCEEEEECCCCCCCCCCCC
Q ss_conf             1204542348866327999718998399999859988689964886--------------68839994155888888888
Q T0609           247 LFSLKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMG--------------DKKYACIEPQTSIINSPNVK  312 (340)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g--------------~~~~vciEP~t~~pda~n~~  312 (340)
                      .+...   ........+++.++.+++.+.+..  .+|++++||+..              .+.+||||||+ +|||+|++
T Consensus       247 ~~~~~---~~~~~~~~~~l~~~~s~~~l~v~s--~~p~l~vyT~~~~~~~~~~~~g~~~~~~~giclEPq~-~PDA~N~~  320 (344)
T 1snz_A          247 NFCLK---GSKEKHFCARVHHAASGRVLEVYT--TQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQN-WPDAVNQP  320 (344)
T ss_dssp             EEEEC---CCSSCEEEEEEEETTTTEEEEEEE--SSSEEEEECCTTCEEEEECGGGCEEETTSCBEEEEES-CTTGGGCT
T ss_pred             CEEEC---CCCCCCCEEEEEECCCCCEEEECC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCC
T ss_conf             32542---688773138998089994678738--9989999878987864437788466887899996888-98765788


Q ss_pred             CCCCCCCCEEECCCCEEEEEEEEEE
Q ss_conf             8776257689698977999999999
Q T0609           313 LDRSVSGFKTLKPNESWSGVCKLYI  337 (340)
Q Consensus       313 ~~~~~~g~~~L~pGe~~~~~~~~~v  337 (340)
                      +++    .++|+|||+++.+++|++
T Consensus       321 ~~~----~~vL~pge~y~~~t~y~F  341 (344)
T 1snz_A          321 RFP----PVLLRPGEEYDHTTWFKF  341 (344)
T ss_dssp             TSC----CCEECTTSCEEEEEEEEE
T ss_pred             CCC----CEEECCCCEEEEEEEEEE
T ss_conf             899----849999898989999999


No 9  
>2cir_A Hexose-6-phosphate mutarotase; mannose-6-phosphate-1-epimerase, galactose-6-phosphate-1- epimerase, hypothetical protein, isomerase; HET: BG6; 1.6A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=100.00  E-value=4.2e-45  Score=278.04  Aligned_cols=267  Identities=24%  Similarity=0.297  Sum_probs=182.4

Q ss_pred             CCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEE
Q ss_conf             8868999987984999950148689999998898599963588443300027632113477368-862008868879978
Q T0609            15 SEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKT   93 (340)
Q Consensus        15 ~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~   93 (340)
                      +...+..++|+..+|+|. .+||.|+||+.  .|.++||..+...   .....+.+||+|+||| .||..+     +|+.
T Consensus         8 ~~~~l~~~~~~~~~a~i~-~~Ga~l~s~~~--~g~e~L~~s~~a~---~~~~~~irGGiPvlfP~~G~~~~-----~g~~   76 (297)
T 2cir_A            8 KEVVLTHPADETTSVHIL-KYGATVYSWKL--KSEEQLWLSTAAK---LDGSKPVRGGIPLVFPVFGKNST-----DEHL   76 (297)
T ss_dssp             SEEEEEETTEEEEEEEEE-TBTTEEEEEEE--TTEECBCBCTTCC---CSSSSCCSBSBCEEBSCSSCCSS-----STTG
T ss_pred             CEEEEECCCCCCEEEEEE-CCCCEEEEEEE--CCEEEEECCCHHH---CCCCCCCCCCCEEEEEEECCCCC-----CCCC
T ss_conf             748999069997899998-78929999998--9989884387776---17999755888398833088988-----9862


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEC-CCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC
Q ss_conf             99235688776667566577535999711367874899999967-89862134884599999999804189999999948
Q T0609            94 YKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFT-KENEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNL  172 (340)
Q Consensus        94 y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~-~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~  172 (340)
                      |+         +++|||+|++.|+|++.+.+ +...|++++.+. ++++++++|||.|+++++|+|.+++|+++++|+|.
T Consensus        77 ~~---------lp~HGfaR~~~W~v~~~~~~-~~~~v~~~l~~~~~~~~~~~~yPf~f~l~~~y~L~~~~L~~~~~v~N~  146 (297)
T 2cir_A           77 SK---------LPQHGLARNSTWEFLGQTKE-NPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENT  146 (297)
T ss_dssp             GG---------SCTTBSGGGSBCEEEEEEEE-TTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECSSEEEEEEEEECC
T ss_pred             CC---------CCCCCCCCCCCEEEEEECCC-CCCEEEEEEEECCCCHHHHHCCCCEEEEEEEEEECCCEEEEEEEEEEC
T ss_conf             68---------98885225643699886058-874699999846799779821884179999999889848999999919


Q ss_pred             C-CHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             8-703100001362476047777632450588703417862776566774237788623336677434655324012045
Q T0609           173 S-SEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLK  251 (340)
Q Consensus       173 ~-~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  251 (340)
                      + +++|||++|+||||++++.....+.+    ++...+  .|..   .+..       . ....+.......+|++|...
T Consensus       147 g~~~~mpf~~G~HpYF~v~~~~~~~~~~----l~~~~~--~d~~---~~~~-------~-~~~~~~~~~~~~~D~vy~~~  209 (297)
T 2cir_A          147 SSSKELKFNWLFHTYFRIEDIEGTMVSN----LAGMKL--YDQL---LKES-------Y-VDKHPVVTFNQETDVIYQNV  209 (297)
T ss_dssp             CSSCCEEEEEEECCEEECSCGGGEEEES----CTTCEE--EETT---TTEE-------E-ECCSSSBCCSSCEEEEECCC
T ss_pred             CCCCCEEEEEECCCEEECCCCCCEEECC----CCCCEE--EEEC---CCCC-------C-CCCCCCCCCCCCEEEEECCC
T ss_conf             9774228778526268448645238826----888605--6403---6776-------2-56787241685404798279


Q ss_pred             CCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC--------------CCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             4234886632799971899839999985998868996488--------------66883999415588888888887762
Q T0609           252 DIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM--------------GDKKYACIEPQTSIINSPNVKLDRSV  317 (340)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--------------g~~~~vciEP~t~~pda~n~~~~~~~  317 (340)
                      .      ....+.+.+.  +.++......+++++++|||.              +.++||||||.             +.
T Consensus       210 ~------~~~~i~~~~~--~~~~~~~~~~~~~~~vvWnP~~~~~~~~~d~ep~~~~~~~vCVEp~-------------~~  268 (297)
T 2cir_A          210 S------AERAIQIVDK--GVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPG-------------HV  268 (297)
T ss_dssp             C------TTCCEEEEET--TEEEEEEEEESCCEEEEEECHHHHHHHCTTCCSTTGGGGEEEEEEE-------------EE
T ss_pred             C------CCEEEEEECC--CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCC-------------CC
T ss_conf             9------8739999589--9609999938999799979974467611114888764798998945-------------57


Q ss_pred             CCCEEECCCCEEEEEEEEEEEEC
Q ss_conf             57689698977999999999859
Q T0609           318 SGFKTLKPNESWSGVCKLYIENM  340 (340)
Q Consensus       318 ~g~~~L~pGe~~~~~~~~~ve~~  340 (340)
                      .++++|+|||+|+++++|+.++|
T Consensus       269 ~~~v~L~PGes~~~~q~l~~~~~  291 (297)
T 2cir_A          269 HDFISLAPGKKWNAYQLLCKEEL  291 (297)
T ss_dssp             EEEEEECTTCEEEEEEEEECC--
T ss_pred             CCCEEECCCCEEEEEEEEECCCC
T ss_conf             99889899996999999953662


No 10 
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A
Probab=100.00  E-value=2.7e-41  Score=256.28  Aligned_cols=259  Identities=17%  Similarity=0.242  Sum_probs=188.1

Q ss_pred             EECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEEC
Q ss_conf             5208868999987984999950148689999998898599963588443300027632113477368-862008868879
Q T0609            12 IIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLG   90 (340)
Q Consensus        12 ~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~   90 (340)
                      ..+++.++|+|+|...+|+|. .+||.|+||+..+ +.++||..+...   .....+.|||+||||| .|+         
T Consensus        36 ~~~~~l~~i~i~~~~~~a~i~-l~GA~l~Sw~~~~-~~e~Lw~s~~a~---~~~~~aiRGGiPicfP~fG~---------  101 (309)
T 2hta_A           36 RQLDDLDLIVVDHPQVKASFA-LQGAHLLSWKPVG-EEEVLWLSNNTP---FKTGVALRGGVPICWPWFGP---------  101 (309)
T ss_dssp             EEETTEEEEEEEETTEEEEEE-TBTTEEEEEEETT-SCCCBCBCTTCC---CCTTCCCSBSBCEEBSCCSS---------
T ss_pred             EEECCCCEEEEECCCEEEEEE-CCCCEEEEEEECC-CCEEEEECCHHH---CCCCCCCCCCCEEEEEECCC---------
T ss_conf             852996589997899899998-8898998999499-988898082540---36888767888698623289---------


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
Q ss_conf             97899235688776667566577535999711367874899999967898621348845999999998041899999999
Q T0609            91 DKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSVV  170 (340)
Q Consensus        91 g~~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~  170 (340)
                               .+..+++.|||+|++.|++.++.+++++.  +++|.+.++++++..||++|+++++|+|..     +++|+
T Consensus       102 ---------~~~~~lp~HGFAR~~~W~l~~~~~~~~~~--~v~~~L~~~~~t~~~~P~~f~l~~~~~L~~-----~l~v~  165 (309)
T 2hta_A          102 ---------AAQQGLPSHGFARNLPWALKAHNEDDNGV--MLTFELQSSEATRKYWPHDFTLLARFKVGK-----TCEIE  165 (309)
T ss_dssp             ---------CSSTTCCTTBSGGGSBCEEEEEEECSSCE--EEEEEEECCHHHHHHSCCCCEEEEEEEESS-----SEEEE
T ss_pred             ---------CCCCCCCCCCCEECCCEEEEEECCCCCCE--EEEEEECCCCCHHHHCCEEEEEEEEEECCC-----EEEEE
T ss_conf             ---------98788987633126854899843889818--999997898302331750079999998686-----59999


Q ss_pred             ECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             48870310000136247604777763245058870341786277656677423778862333667743465532401204
Q T0609           171 NLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSL  250 (340)
Q Consensus       171 N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  250 (340)
                      |.+++++||++|+||||++++.....+.+     ....+  .|.  +...+..        ....+........|.+|..
T Consensus       166 N~~~~~~pf~~glHpYF~V~d~~~~~v~g-----l~~~~--~D~--~~~~~~~--------~~~~~~~~~~~~~driy~~  228 (309)
T 2hta_A          166 LEAHGEFATTSALHSYFNVGDIANVKVSG-----LGDRF--IDK--VNDAKEG--------VLTDGIQTFPDRTDRVYLN  228 (309)
T ss_dssp             EEEESSEEEEEEECCEEECSCGGGCEEEC-----CCSEE--EET--TTTTEEE--------ECSSSCEECSSCEEEEESS
T ss_pred             ECCCCCCCCCCCCCCEEECCCHHCCEEEC-----CCCCC--CCC--CCCCCCC--------EECCCCCCCCCCEEEEECC
T ss_conf             74588510150258406657600208976-----78530--303--5575442--------5258855246855799758


Q ss_pred             CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCC-------------CCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             54234886632799971899839999985998868996488-------------66883999415588888888887762
Q T0609           251 KDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDM-------------GDKKYACIEPQTSIINSPNVKLDRSV  317 (340)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-------------g~~~~vciEP~t~~pda~n~~~~~~~  317 (340)
                      .        ...+.+.++..+++|++..+ +++.+++|||+             ++++||||||+.+             
T Consensus       229 ~--------~~~~~i~d~~~~r~i~i~~~-g~~~~VVWnP~~~~a~~m~D~~~~~~~~fvCVEP~~~-------------  286 (309)
T 2hta_A          229 P--------EACSVIHDATLNRTIDVVHH-HHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYA-------------  286 (309)
T ss_dssp             C--------CSEEEEEETTTTEEEEEEEE-SCSEEEEEECHHHHHHHCTTSCTTGGGGEEEEEEEEE-------------
T ss_pred             C--------CCCEEEEECCCCCEEEEEEC-CCCEEEEECCCHHHCCCCCCCCCCCCCCEEEECCCCC-------------
T ss_conf             9--------98689997899988999974-9983999796346423012376678888899798006-------------


Q ss_pred             CCCEEECCCCEEEEEEEEEEEE
Q ss_conf             5768969897799999999985
Q T0609           318 SGFKTLKPNESWSGVCKLYIEN  339 (340)
Q Consensus       318 ~g~~~L~pGe~~~~~~~~~ve~  339 (340)
                      ...+.|.||++++..++|+|++
T Consensus       287 ~~~~~~~~g~~~~~~q~i~v~~  308 (309)
T 2hta_A          287 TAPQQATEEKPSRLAQTICVAK  308 (309)
T ss_dssp             EEEEEEBTTBCEEEEEEEEEEC
T ss_pred             CCCCCCCCCCCEEEEEEEEEEC
T ss_conf             9984537999679999999974


No 11 
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7
Probab=100.00  E-value=9.5e-37  Score=229.95  Aligned_cols=244  Identities=17%  Similarity=0.189  Sum_probs=169.2

Q ss_pred             EEECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEE
Q ss_conf             35208868999987984999950148689999998898599963588443300027632113477368-86200886887
Q T0609            11 EIIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKL   89 (340)
Q Consensus        11 ~~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~   89 (340)
                      .+.+|+.++|+|+|...+|+|. .+||.|+||+.+..+.++||..+...   .....+.|||+|+||| .|+.       
T Consensus        15 ~~~~~~l~~~~l~~~~~~a~i~-l~Ga~l~s~~~~~g~~~~Lw~s~~a~---~~~~~~IRGGiPv~fP~fG~~-------   83 (270)
T 1jov_A           15 LVQHNDIPVLHLKHAVGTAKIS-LQGAQLISWKPQNAKQDVLWLSEVEP---FKNGNAIRGGVPICYPWFGGV-------   83 (270)
T ss_dssp             EEEETTEEEEEEEETTEEEEEE-TBTTEEEEEEETTCSSCSBCBCTTCC---CCTTSCCSBSCCEEBSSCGGG-------
T ss_pred             EEECCCCCEEEEECCCEEEEEE-CCCCEEEEEEECCCCEEEEEECCHHH---CCCCCCCCCCCEECCCCCCCC-------
T ss_conf             7602990289994899899998-99968999997999803799484786---379996348662645303999-------


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEE
Q ss_conf             99789923568877666756657753599971136787489999996789862134884599999999804189999999
Q T0609            90 GDKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQTTSV  169 (340)
Q Consensus        90 ~g~~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v  169 (340)
                                    +.+.|||||++.|++.+.+++..  .+++++.+.       .+|+.++++++|+|+     +++++
T Consensus        84 --------------~~p~HGFAR~~~W~l~~~~~~~~--~~~l~~~l~-------~~~~~~~~~~~~~lt-----~~~~v  135 (270)
T 1jov_A           84 --------------KQPAHGTARIRLWQLSHYYISVH--KVRLEFELF-------SDLNIIEAKVSMVFT-----DKCHL  135 (270)
T ss_dssp             --------------SSSTTBSGGGSBCEEEEEEEETT--EEEEEEEEE-------CTTSCEEEEEEEEES-----SSEEE
T ss_pred             --------------CCCCCCCCCCCCEEEEEECCCCC--EEEEEECCC-------CCCCCCCEEEEEEEC-----CEEEE
T ss_conf             --------------98989751276249977617762--389972345-------787632189999934-----23799


Q ss_pred             EECCCHHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             94887031000013624760477776324505887034178627765667742377886233366774346553240120
Q T0609           170 VNLSSEEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFS  249 (340)
Q Consensus       170 ~N~~~~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  249 (340)
                      +|.++.++||++|+||||++++.....+.+     -....+ .+..   .+         ......+ .......|.+|.
T Consensus       136 ~n~~~~~~~f~~glHpYF~v~d~~~~~v~g-----l~~~~~-~~~~---~~---------~~~~~~~-~~~~~~~d~iy~  196 (270)
T 1jov_A          136 TFTHYGEESAQAALHTYFNIGDINQVEVQG-----LPETCF-NSLN---QQ---------QENVPSP-RHISENVDCIYS  196 (270)
T ss_dssp             EEEECCSSCEEEEECCEEECSCGGGEEEES-----CCSEEE-ETTT---TE---------EEECCSS-BCCSSCEEEEEE
T ss_pred             EECCCCCCEEEEEEEEEEECCCCCCEEEEC-----CCCCCE-ECCC---CC---------CEECCCC-CCCCCCEEEEEE
T ss_conf             974699714777540127517832169967-----886441-0001---53---------2103787-135777879991


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC----------CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             4542348866327999718998399999859988689964886----------688399941558888888888776257
Q T0609           250 LKDIDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMG----------DKKYACIEPQTSIINSPNVKLDRSVSG  319 (340)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g----------~~~~vciEP~t~~pda~n~~~~~~~~g  319 (340)
                      ...        ..+++.++..+++|.+..+ +++.+++|||+.          +++||||||...               
T Consensus       197 ~~~--------~~~~i~d~~~~~~i~i~~~-g~~~~vVWnP~~~~a~~m~d~~~~~fvCVEpa~~---------------  252 (270)
T 1jov_A          197 AEN--------MQNQILDKSFNRTIALHHH-NASQFVLWNPWHKKTSGMSETGYQKMLCLETARI---------------  252 (270)
T ss_dssp             CSS--------SEEEEEETTTTEEEEEEEE-SCSEEEEEECTTSCCTTCCTTGGGGEEEEEEEEE---------------
T ss_pred             CCC--------CCEEEEECCCCCEEEEEEC-CCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCC---------------
T ss_conf             799--------8789997899988999984-9996899797410004174478867899792677---------------


Q ss_pred             CEEECCCCEEEEEEEEE
Q ss_conf             68969897799999999
Q T0609           320 FKTLKPNESWSGVCKLY  336 (340)
Q Consensus       320 ~~~L~pGe~~~~~~~~~  336 (340)
                      ...|+|||+|+.+++|.
T Consensus       253 ~~~L~PGes~t~~~~i~  269 (270)
T 1jov_A          253 HHLLEFGESLSVEISLK  269 (270)
T ss_dssp             EEEECTTCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEEEEEE
T ss_conf             76088999199999992


No 12 
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=96.85  E-value=0.016  Score=31.42  Aligned_cols=130  Identities=15%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             EEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCC-CCEECCCEEEECCEEEE
Q ss_conf             68999987984999950148689999998898599963588443300027632113477368-86200886887997899
Q T0609            17 HKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFP-PNRIDDGTFKLGDKTYK   95 (340)
Q Consensus        17 ~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p-~~Ri~~g~f~~~g~~y~   95 (340)
                      .+.|+++|+-++++|- ..||+|.++.++.    .-...+        ...|..    ++.. +++..-..+.+-+    
T Consensus         3 ~~~itv~nd~~~~~is-~~Gg~I~~~~Lk~----y~~~~~--------~~~p~~----L~~~~~~~~~~~~~g~~~----   61 (280)
T 3bs6_A            3 GKLISVKTDVLDLTIN-TRGGDVEQALLPA----YPKELN--------STQPFQ----LLETSPQFIYQAQSGLTG----   61 (280)
T ss_dssp             -CEEEEECSSCEEEEE-TBTTEEEEEEEEE----EESSTT--------CCSEEE----EEEEETTEEEEEEEEEES----
T ss_pred             CCEEEEECCCEEEEEE-CCCCEEEEEECCC----CCCCCC--------CCCCEE----ECCCCCCCEEEEEEEEEC----
T ss_conf             5199998896999998-9997785878157----854427--------999859----726899851478610002----


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC--EEEEEEEEEECC
Q ss_conf             235688776667566577535999711367874899999967898621348845999999998041--899999999488
Q T0609            96 FPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK--GLKQTTSVVNLS  173 (340)
Q Consensus        96 l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~--~L~i~~~v~N~~  173 (340)
                        .+......+..-..+.....-.......+.  .++.|.....        ..+.++.+|+|.++  .+.++++|+|.+
T Consensus        62 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~vt~~~~~~--------~g~~v~k~ytf~~d~Y~i~~~~~v~N~s  129 (280)
T 3bs6_A           62 --RDGPDNPANGPRPLYNVEKDAYVLAEGQNE--LQVPMTYTDA--------AGNTFTKTFVLKRGDYAVNVNYNVQNAG  129 (280)
T ss_dssp             --TTCTTSGGGSSCCBCBCSCSEEECCTTCSE--EEEEEEEECT--------TCCEEEEEEEEETTCCEEEEEEEEECCS
T ss_pred             --CCCCCCCCCCCCCCEEECCCCEEECCCCCC--EEEEEEEECC--------CCEEEEEEEEECCCCEEEEEEEEEEECC
T ss_conf             --578776467777434844772375489850--7999999879--------9859999999889957899999999268


Q ss_pred             CHHHEE
Q ss_conf             703100
Q T0609           174 SEEMPL  179 (340)
Q Consensus       174 ~~~~p~  179 (340)
                      +.+...
T Consensus       130 ~~~~~~  135 (280)
T 3bs6_A          130 EKPLEI  135 (280)
T ss_dssp             SSCEEE
T ss_pred             CCCCCC
T ss_conf             886411


No 13 
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic domain, transmembrane, chaperone; 2.50A {Escherichia coli K12}
Probab=96.32  E-value=0.037  Score=29.32  Aligned_cols=126  Identities=15%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             EEEEEEECCCEEEEEECCCCCEEEEEEECC------CCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEEC
Q ss_conf             689999879849999501486899999988------98599963588443300027632113477368862008868879
Q T0609            17 HKCIRFAAGGYEALIIPDVGGNVVELKDTN------KGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLG   90 (340)
Q Consensus        17 ~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~   90 (340)
                      .+.|+|+|+.++++|- ..||+|.++.++.      .+..+.+....                     +++.....+.+-
T Consensus        34 ~~~itvetd~~~~~~s-~~GG~I~~~~Lk~y~~~~~~~~p~~l~~~~---------------------~~~~~~~~~~l~   91 (330)
T 3blc_A           34 GKLISVKTDVLDLTIN-TRGGDVEQALLPAYPKELNSTQPFQLLETS---------------------PQFIYQAQSGLT   91 (330)
T ss_dssp             CCEEEEECSSCEEEEE-TBTCCEEEEEEEEEESSTTCSSEEEEEEEC---------------------SSCEEEEEEEEE
T ss_pred             CCEEEEECCCEEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEECCCC---------------------CCCCEEEEEEEE
T ss_conf             7879998897999997-999778586616785332799984970589---------------------876215654101


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC--EEEEEEE
Q ss_conf             97899235688776667566577535999711367874899999967898621348845999999998041--8999999
Q T0609            91 DKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK--GLKQTTS  168 (340)
Q Consensus        91 g~~y~l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~--~L~i~~~  168 (340)
                      +      .+......+..-..+.............+.  .++.|.....+        .+.++.+|+|.++  .+.++++
T Consensus        92 ~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~vtf~~~~~~--------g~~v~k~ytf~~~~Y~i~~~~~  155 (330)
T 3blc_A           92 G------RDGPDNPANGPRPLYNVEKDAYVLAEGQNE--LQVPMTYTDAA--------GNTFTKTFVLKRGDYAVNVNYN  155 (330)
T ss_dssp             S------TTCTTSGGGCSCCBCBCSCSEEECCTTCCE--EEEEEEEECTT--------SCEEEEEEEEETTCCEEEEEEE
T ss_pred             C------CCCCCCCCCCCCCCEEECCCEEEECCCCCC--EEEEEEEECCC--------CEEEEEEEEECCCCEEEEEEEE
T ss_conf             2------678775467777523725770573489960--69999998899--------8699999998689468999999


Q ss_pred             EEECCCHHHEEC
Q ss_conf             994887031000
Q T0609           169 VVNLSSEEMPLS  180 (340)
Q Consensus       169 v~N~~~~~~p~~  180 (340)
                      |+|.|.++....
T Consensus       156 v~N~s~~~~~~~  167 (330)
T 3blc_A          156 VQNAGEKPLEIS  167 (330)
T ss_dssp             EECCSSSCEEEE
T ss_pred             EEECCCCCCCCC
T ss_conf             994788865113


No 14 
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=92.35  E-value=0.38  Score=23.43  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             EEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCCC--------CEE-----
Q ss_conf             7523520886899998798499995014868999999889859996358844330002763211--------347-----
Q T0609             8 IKEEIIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVY--------GLP-----   74 (340)
Q Consensus         8 ~~~~~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------G~p-----   74 (340)
                      ....+.+.|.+-|.+.|+.+.+.|.|..||.|..|........+..+.  ....+.|.......        |+.     
T Consensus       389 ~~~D~d~DG~~Ei~~~~~~~~~~~~~~~gg~i~E~d~~~~~~N~~~tl--~r~~E~yh~~~~~~~~~~~~~~~i~s~h~~  466 (659)
T 1k1x_A          389 KILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVL--PRRWEHYHEVPEATKPEKESEEGIASIHEL  466 (659)
T ss_dssp             EEECSSSSSSCEEEEECSSEEEEEETTTTTEEEEEEETTTTEETTCCC--CCCCCTTCC---------------------
T ss_pred             EEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEE--CCCCCCHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             541347899868999769668999138984799960565221200121--147654045552268755567776555441


Q ss_pred             ----------ECCCCCEECCCEEEECCEEEEECCCCC-----CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCC
Q ss_conf             ----------736886200886887997899235688-----77666756657753599971136787489999996789
Q T0609            75 ----------VLFPPNRIDDGTFKLGDKTYKFPINEA-----KNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKE  139 (340)
Q Consensus        75 ----------i~~p~~Ri~~g~f~~~g~~y~l~~n~~-----~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~  139 (340)
                                .+.|- +-..+.|.-    |=+++...     .+...-=|-....+.+..-..     ..+.++..-.. 
T Consensus       467 ~~~~~~~~~~~l~yD-~~~r~~~~d----h~~~~~~~~~~~~~~~~~e~~df~~~~y~~~~~~-----~~~~~~~~g~~-  535 (659)
T 1k1x_A          467 GKQIPEEIRRELAYD-WQLRAILQD----HFIKPEETLDNYRLVKYHELGDFVNQPYEYEMIE-----NGVKLWREGGV-  535 (659)
T ss_dssp             --CCCHHHHTTCCCC-SSCCCEEEE----EEECTTCCHHHHHTTCSCCCBSCSSSCCEEEEET-----TEEEEEEEEEE-
T ss_pred             CCCCCHHHHHHCCCC-CCCCCCHHH----CCCCCCCCHHHHHCCCCEEECCCCCCCCEEEEEC-----CCEEEEEECCC-
T ss_conf             123422345423566-311333111----0478887788874577235324346762346415-----71699996761-


Q ss_pred             CCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCH
Q ss_conf             862134884599999999804189999999948870
Q T0609           140 NEAYKYFSHEFQFKLSYELSSKGLKQTTSVVNLSSE  175 (340)
Q Consensus       140 ~~~~~~~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~  175 (340)
                         +...+.++.++..|+++.++++++|++.|.+..
T Consensus       536 ---~~~~~~~~~~~K~~~~~~~~~~~~y~~~~~~~~  568 (659)
T 1k1x_A          536 ---YAEEKIPARVEKKIELTEDGFIAKYRVLLEKPY  568 (659)
T ss_dssp             ---ESSSEEEEEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred             ---CCCCCCCEEEEEEEEECCCCEEEEEEEEECCCC
T ss_conf             ---346756548999999718950899999507985


No 15 
>1ejx_B Urease beta subunit; alpha-beta barrel, nickel metalloenzyme, temperature dependent structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.85.3.1 PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* 1fwe_B* 1fwf_B* 1fwg_B* 1fwh_B* ...
Probab=62.34  E-value=3.9  Score=17.61  Aligned_cols=30  Identities=23%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             EEEECCEEEEEEEEEECCCHHHEECCCCCCEE
Q ss_conf             99804189999999948870310000136247
Q T0609           156 YELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF  187 (340)
Q Consensus       156 ~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF  187 (340)
                      +.|....-+++++|+|+||+|.  +.+-|--|
T Consensus        13 I~lN~gr~~~~l~V~N~GDRpI--QVGSH~HF   42 (101)
T 1ejx_B           13 IALNTGRATCRVVVENHGDRPI--QVGSHYHF   42 (101)
T ss_dssp             EECSTTCCEEEEEEEECSSSCE--EEETTSCG
T ss_pred             EEECCCCCEEEEEEEECCCCCE--EECCCCCH
T ss_conf             8876999678999772798635--87354553


No 16 
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=60.40  E-value=6  Score=16.50  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             EEEEEEEEEEEC--CEEEEEEEEEECCCHHHEECCCCCCEEECC
Q ss_conf             599999999804--189999999948870310000136247604
Q T0609           149 EFQFKLSYELSS--KGLKQTTSVVNLSSEEMPLSVGYHSAFNVP  190 (340)
Q Consensus       149 ~~~~~~t~~l~~--~~L~i~~~v~N~~~~~~p~~~~~H~YF~~~  190 (340)
                      .++++++|++.+  +.|+...+++|.|++++.+....=..+.+|
T Consensus       144 ~l~v~l~y~i~~~~~vi~~~~~i~N~g~~~v~l~~~~s~~l~~~  187 (745)
T 3mi6_A          144 GLALDLNYSIFPHQDVIVKSAKFTNPSSEKLVLNRALSSQLDLP  187 (745)
T ss_dssp             CCEEEEEEEEEGGGTEEEEEEEEECCSSSCEEEEEEEEEEEEES
T ss_pred             CEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCCCCCCC
T ss_conf             93999999997899989999999989998889850420525578


No 17 
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=59.80  E-value=6.2  Score=16.44  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=10.7

Q ss_pred             EECCCCEEEEEEEEE
Q ss_conf             969897799999999
Q T0609           322 TLKPNESWSGVCKLY  336 (340)
Q Consensus       322 ~L~pGe~~~~~~~~~  336 (340)
                      .++|||+.+...+.+
T Consensus       321 pI~PGETk~v~v~a~  335 (382)
T 1yew_A          321 PLAPGETRTVDVTAS  335 (382)
T ss_dssp             CBCTTCEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEEE
T ss_conf             759996248999961


No 18 
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=52.80  E-value=5  Score=16.99  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=20.8

Q ss_pred             EEEECCEEEEEEEEEECCCHHHEECCCCCCEE
Q ss_conf             99804189999999948870310000136247
Q T0609           156 YELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF  187 (340)
Q Consensus       156 ~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF  187 (340)
                      +.|....-+++++|+|+||+|.  +.+-|--|
T Consensus        19 I~lN~gr~~~~l~V~NtGDRpI--QVGSH~HF   48 (126)
T 4ubp_B           19 IEINAGREKTTIRVSNTGDRPI--QVGSHIHF   48 (126)
T ss_dssp             EETTTTSCEEEEEEEECSSSCE--EEETTSCG
T ss_pred             EEECCCCCEEEEEEEECCCCCE--EECCCCCH
T ss_conf             8876999778999773798646--86165584


No 19 
>3isy_A Bsupi, intracellular proteinase inhibitor; NP_388994.1, intracellular proteinase inhibitor (bsupi) from bacillus subtilis, structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=41.13  E-value=12  Score=14.68  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=25.0

Q ss_pred             EEEEEEEEEEECCEEEEEEEEEECCCHHHEECCC
Q ss_conf             5999999998041899999999488703100001
Q T0609           149 EFQFKLSYELSSKGLKQTTSVVNLSSEEMPLSVG  182 (340)
Q Consensus       149 ~~~~~~t~~l~~~~L~i~~~v~N~~~~~~p~~~~  182 (340)
                      .+.+.+...-.+..+.+.++++|.++++..+.+.
T Consensus         6 ~~~~~~~~~~~~e~v~~~ltl~N~~~~~v~l~F~   39 (120)
T 3isy_A            6 EVVLSIDAIQEPEQIKFNMSLKNQSERAIEFQFS   39 (120)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEECSSSCEEEEES
T ss_pred             EEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEC
T ss_conf             0799841002785299999999189976898977


No 20 
>1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=40.63  E-value=13  Score=14.63  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             CCEEEEEE-EEEEEECCEEEEEEEEEECCCHHHEECCCCCCEE
Q ss_conf             88459999-9999804189999999948870310000136247
Q T0609           146 FSHEFQFK-LSYELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF  187 (340)
Q Consensus       146 ~P~~~~~~-~t~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF  187 (340)
                      -|+.+... =.+.|....-+++++|+|.||+|.-  .+-|--|
T Consensus       107 iPGei~~~~~~I~ln~gr~~~~l~V~N~GDRPIQ--VGSH~HF  147 (238)
T 1e9y_A          107 VPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQ--IGSHFHF  147 (238)
T ss_dssp             CTTCEECCSCEEETTTTCCCCEEEEEECSSSCEE--EETTSCG
T ss_pred             CCCCEECCCCCCCCCCCCCEEEEEEECCCCCCEE--ECCCCCH
T ss_conf             8975545998601379986699999569987505--4365424


No 21 
>3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium}
Probab=29.56  E-value=7.8  Score=15.86  Aligned_cols=12  Identities=33%  Similarity=0.321  Sum_probs=6.4

Q ss_pred             ECCCCEEEEEEE
Q ss_conf             698977999999
Q T0609           323 LKPNESWSGVCK  334 (340)
Q Consensus       323 L~pGe~~~~~~~  334 (340)
                      ++|||+.+..++
T Consensus       327 I~PGETr~v~v~  338 (392)
T 3chx_A          327 LAPGETKTIEVK  338 (392)
T ss_dssp             CCTTCCCCCCEE
T ss_pred             CCCCCCEEEEEE
T ss_conf             699961589999


No 22 
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=23.80  E-value=25  Score=12.94  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=10.9

Q ss_pred             EEEEEEEECCEEEEEEE
Q ss_conf             99999980418999999
Q T0609           152 FKLSYELSSKGLKQTTS  168 (340)
Q Consensus       152 ~~~t~~l~~~~L~i~~~  168 (340)
                      -+++|+|+++.|.|+.+
T Consensus        31 gtvtytldgndleirit   47 (85)
T 2kl8_A           31 GTVTYTLDGNDLEIRIT   47 (85)
T ss_dssp             CEEEEEECSSCEEEEEE
T ss_pred             CEEEEEECCCEEEEEEE
T ss_conf             55899954971699982


Done!