Query T0609 NP_347334.1, CLOSTRIDIUM ACETOBUTYLICUM, 340 residues
Match_columns 340
No_of_seqs 133 out of 2509
Neff 9.3
Searched_HMMs 11830
Date Mon Jul 5 09:08:50 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0609.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0609.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01263 Aldose_epim: Aldose 1 100.0 0 0 328.7 22.6 291 18-336 1-301 (301)
2 PF09095 DUF1926: Domain of un 96.0 0.0014 1.2E-07 35.9 2.4 162 12-188 2-185 (278)
3 PF04744 Monooxygenase_B: Mone 62.8 2.9 0.00024 16.8 3.8 15 322-336 320-334 (381)
4 PF00699 Urease_beta: Urease b 58.0 2.2 0.00019 17.4 2.1 30 156-187 12-41 (100)
5 PF00845 Gemini_BL1: Geminivir 55.2 3.9 0.00033 16.0 4.8 12 321-332 230-241 (276)
6 PF05506 DUF756: Domain of unk 34.1 8.5 0.00072 14.0 3.8 39 146-186 5-43 (89)
7 PF02017 CIDE-N: CIDE-N domain 16.8 15 0.0013 12.5 0.6 12 319-330 66-77 (78)
8 PF07385 DUF1498: Protein of u 16.7 19 0.0016 12.0 2.2 62 123-189 113-177 (225)
9 PF11320 DUF3122: Protein of u 15.5 20 0.0017 11.9 4.0 33 113-154 26-60 (134)
10 PF04379 DUF525: Protein of un 15.5 20 0.0017 11.9 2.3 17 322-338 58-74 (90)
No 1
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available . It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase. The best conserved region in the sequence of mutarotase is centred around a conserved histidine residue which may be involved in the catalytic mechanism.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1snz_B 1so0_B 1ns0_B 1ns8_A 1nss_A 1nsr_B 1mmy_A 1mmx_B 1nsm_B 1ns7_B ....
Probab=100.00 E-value=0 Score=328.75 Aligned_cols=291 Identities=26% Similarity=0.456 Sum_probs=233.4
Q ss_pred EEEEEECC-CEEEEEECCCCCEEEEEEECCCC-EEEEECCCCCCCCCHHCCCCCCCCEEECCCCCEECCCEEEECCEEEE
Q ss_conf 89999879-84999950148689999998898-59996358844330002763211347736886200886887997899
Q T0609 18 KCIRFAAG-GYEALIIPDVGGNVVELKDTNKG-VTILRTPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKTYK 95 (340)
Q Consensus 18 ~~v~l~n~-~~~~~i~p~~Ga~i~sl~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~G~pi~~p~~Ri~~g~f~~~g~~y~ 95 (340)
+.|+|+|+ .++|+| +.+||.|+||+.++.+ .+++|..+. .+.+...+ ++|.++.+++|||++|+|.++|+.|+
T Consensus 1 ~~i~L~n~~~~~~~i-~~~Ga~l~s~~~~~~~~~~~l~~~~~---~~~~~~~~-~~~~~l~p~~~Ri~~g~~~~~G~~~~ 75 (301)
T PF01263_consen 1 DLITLENGNGLRVVI-PEYGAQLTSLKVKGKDGRELLWGSDP---AEDYWKDP-YFGPILFPFANRIRNGRFKLDGKPYC 75 (301)
T ss_dssp EEEEEEETCTEEEEE-E----EEEEEEETT-TEEBSB---TS---HHHHHHTT---S-EEBSB-SEEGGGEEEETTEEEE
T ss_pred CEEEEECCCCCEEEE-ECCCCEEEEEEECCCCCEEEECCCCC---HHHHCCCC-CCEEECCCCCEEEECCEEEECCEEEE
T ss_conf 999998899549999-76692999999899751567628988---79961566-53176898670867998978998999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCE-EEEEEEEEECCC
Q ss_conf 2356887766675665775359997113678748999999678986213488459999999980418-999999994887
Q T0609 96 FPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKG-LKQTTSVVNLSS 174 (340)
Q Consensus 96 l~~n~~~~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~-L~i~~~v~N~~~ 174 (340)
++.|++ ..+++|||+|+++|++.+... ..++++++.+..+ ...+|||+|+++++|+|+++. |+++++++|.|
T Consensus 76 ~~~~~~-~~~~~HG~~r~~~w~~~~~~~---~~~v~~~l~~~~~--~~~~~P~~~~~~~~y~L~~~~~L~i~~~v~n~g- 148 (301)
T PF01263_consen 76 LPWNEP-YPHPLHGFARNRPWQVEEQSE---DDSVTFTLSSDPD--GDEGYPFDFELEVTYTLDGDGELSITYTVTNDG- 148 (301)
T ss_dssp BS-SB--CCSEETTBGGGSB-EEEEEEC---TTEEEEEEEEECT--CHHHS-S-EEEEEEEEEETTEEEEEEEEEEESS-
T ss_pred EECCCC-CCCCCCCCCCCCCEEEEEECC---CCEEEEEEEECCC--CCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC-
T ss_conf 731677-986778897684389999726---7629999997478--544798630799999998997399999999688-
Q ss_pred HHHEECCCCCCEEECCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEECCC
Q ss_conf 03100001362476047777632450588703417862776566774237788623336677434655--3240120454
Q T0609 175 EEMPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASH--PIESLFSLKD 252 (340)
Q Consensus 175 ~~~p~~~~~H~YF~~~~~~~~~~~~~~l~~~~~~~~~~d~~~lptg~~~~~~~~~~~~~~~~~~~~~~--~~D~~~~~~~ 252 (340)
+++||++|+||||++++. ++.++++++++..+++.+++.+|||+.....+..+++ ..+..+... .+|++|....
T Consensus 149 ~~~p~~~g~HpyF~~~~~---~~~~~~l~~~~~~~~~~~~~~iptg~~~~~~~~~~df-~~~~~l~~~~~~~D~~~~~~~ 224 (301)
T PF01263_consen 149 EPMPFSLGFHPYFNLPGD---SIDDHQLQFEADEYLELDDDLIPTGELAPVEGTPFDF-RQPRPLGEDIEGFDHVFVLDG 224 (301)
T ss_dssp SEEEEBEEE--EEETTCC----CTGGEEEEEEEEEEEEETTS-EEEEEEETTTCETTC-SSSEEECSSCC-EEEEEEESS
T ss_pred CCEEEEEECCCEEECCCC---CCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEECCC
T ss_conf 655889863736851886---4213599990760352365678733311478985415-688363788642353898288
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 234886632799971899839999985998868996488668-----839994155888888888877625768969897
Q T0609 253 IDVNGKTFRGACIEDASKNTRVVYEMSSEYKYLVIWNDMGDK-----KYACIEPQTSIINSPNVKLDRSVSGFKTLKPNE 327 (340)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~g~~-----~~vciEP~t~~pda~n~~~~~~~~g~~~L~pGe 327 (340)
. ....+.....+++++++.+..++++++|++.+.. ..+|+||++. +++++.... ++++|+|||
T Consensus 225 ~-------~~~~~~~~~~~~~i~l~~~~~~~~~~v~t~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~----~~~~L~PGe 292 (301)
T PF01263_consen 225 K-------GRAAIILPSPGRGITLEVDTSQPSLVVWTPGGEPAYVCDEGICLEPQFL-PDEANNPGF----GLIVLAPGE 292 (301)
T ss_dssp T-------SEEEEEEETTTEEEEEEEEESSSEEEEEEETTCHCCTTTSSCEEETTCE-ECGGGETTS----CGEEEE---
T ss_pred C-------CCEEEEECCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEE-ECCHHCCCC----CCEEECCCC
T ss_conf 7-------5189999159985899997899929997799863244776232577714-730435899----999999999
Q ss_pred EEEEEEEEE
Q ss_conf 799999999
Q T0609 328 SWSGVCKLY 336 (340)
Q Consensus 328 ~~~~~~~~~ 336 (340)
+++.+++|+
T Consensus 293 ~~~~~~~~~ 301 (301)
T PF01263_consen 293 SYTFTTRYR 301 (301)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
T ss_conf 999999989
No 2
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) . Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions . More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1k1x_B 1k1y_A 1k1w_A.
Probab=95.96 E-value=0.0014 Score=35.93 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=79.6
Q ss_pred EECCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCHHCCCC-----C--CCCEEECCC-CCEE-
Q ss_conf 520886899998798499995014868999999889859996358844330002763-----2--113477368-8620-
Q T0609 12 IIWSEHKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRP-----Q--VYGLPVLFP-PNRI- 82 (340)
Q Consensus 12 ~~~~g~~~v~l~n~~~~~~i~p~~Ga~i~sl~~~~~~~~~l~~~~~~~~~~~~~~~~-----~--~~G~pi~~p-~~Ri- 82 (340)
+.+.|.+-|.|+++.+-+.+-|.+||.|..|..+.....+... .....+.|.... . -.|+.-..- ...+
T Consensus 2 fD~DG~~Ei~l~~~~~~~~~~p~~GGsl~Eld~k~~~~Nl~dt--LtRr~E~YH~ki~~~~~~~~~egi~siHe~~~~~~ 79 (278)
T PF09095_consen 2 FDFDGRDEILLENESFNAYFKPAQGGSLFELDSKPKAHNLQDT--LTRRWEAYHEKIEQAQSESSGEGIASIHERVKFKP 79 (278)
T ss_dssp SS-----EEEEE----EEEE-TT----EEEEEETTTTEETT----------GGG--------------------------
T ss_pred CCCCCCCEEEEECCCEEEEEEECCCCEEEEEECCCCCCCHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 7878830179977867999961889679998236631466440--36687353621026776557777556335023356
Q ss_pred ---CCC-EEEECCEEE---EECCCCCC------CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEE
Q ss_conf ---088-688799789---92356887------76667566577535999711367874899999967898621348845
Q T0609 83 ---DDG-TFKLGDKTY---KFPINEAK------NNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHE 149 (340)
Q Consensus 83 ---~~g-~f~~~g~~y---~l~~n~~~------~~~~~HG~~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~P~~ 149 (340)
++- .|.+.-+.- |+-.++.. ..-.-=|-..++++.+..... + |++.-.. ...+.+
T Consensus 80 e~~~~~L~yD~~~R~s~~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~~---~--v~~~r~g-------~v~~~~ 147 (278)
T PF09095_consen 80 EGIKKELVYDWYRRVSFIDHFLDPETTLEDFYQNSFREYGDFANQPYNYELRKD---N--VRFKRDG-------GVKGYP 147 (278)
T ss_dssp HHHHTT----SS---EEE---B-TT--HHHHHTTTS------SSS--EEE-----------EEEE-----------SB--
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCC---C--EEEEEEC-------CCCCCC
T ss_conf 120200566742242023100789999999867631000210247515564267---4--6999616-------743253
Q ss_pred EEEEEEEEEECCEEEEEEEEEECCCHHHEECCCCCCEEE
Q ss_conf 999999998041899999999488703100001362476
Q T0609 150 FQFKLSYELSSKGLKQTTSVVNLSSEEMPLSVGYHSAFN 188 (340)
Q Consensus 150 ~~~~~t~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF~ 188 (340)
+.++.+|+|.+++|.++|+++ .+..+.+..++.--.++
T Consensus 148 ~~l~K~y~l~~~~~~v~Y~i~-~~~~~~~~~f~vE~Nla 185 (278)
T PF09095_consen 148 ITLEKTYRLTENGLQVRYEIK-ESPRDIELLFGVEINLA 185 (278)
T ss_dssp EEEEEEEE------EEEEEEE--ESS---EEE-EEEE--
T ss_pred EEEEEEEEEECCEEEEEEEEE-ECCCCCCEEEEEEEEEC
T ss_conf 389999999289699999999-67877535899998621
No 3
>PF04744 Monooxygenase_B: Monellin Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related . These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules . These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus (Bath) is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain. The soluble regions of particulate methane monooxygenase from Methylococcus capsulatus (Bath) derive primarily from the B subunit. This subunit forms two antiparallel beta sheets and contains the mono- and di- nuclear copper metal centres .; PDB: 4mon_D 1fa3_A 3mon_F 1krl_D 2o9u_X 1iv7_B 1mol_B 1iv9_A 1fuw_A 1m9g_A ....
Probab=62.77 E-value=2.9 Score=16.75 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=9.1
Q ss_pred EECCCCEEEEEEEEE
Q ss_conf 969897799999999
Q T0609 322 TLKPNESWSGVCKLY 336 (340)
Q Consensus 322 ~L~pGe~~~~~~~~~ 336 (340)
.++|||+.+...+.+
T Consensus 320 pI~PGETk~v~v~aq 334 (381)
T PF04744_consen 320 PIAPGETKTVEVEAQ 334 (381)
T ss_dssp -B----EEEEEEEEE
T ss_pred CCCCCCCEEEEEEEE
T ss_conf 769996258999961
No 4
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia : Urea + H_2O = CO_2 + 2 NH_3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria , it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known . This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1krb_B 1fwi_B 1fwc_B 1eju_B 1krc_B 1ejr_B 1ejt_B 1fwh_B 1a5k_B 1fwd_B ....
Probab=58.02 E-value=2.2 Score=17.38 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEECCEEEEEEEEEECCCHHHEECCCCCCEE
Q ss_conf 99804189999999948870310000136247
Q T0609 156 YELSSKGLKQTTSVVNLSSEEMPLSVGYHSAF 187 (340)
Q Consensus 156 ~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~YF 187 (340)
+.|....-+++++|+|.||+|. +.+-|--|
T Consensus 12 I~lN~gr~~~~l~V~NtGDRPI--QVGSHyHF 41 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDRPI--QVGSHYHF 41 (100)
T ss_dssp EETT----EEEEEEEE-----E--EE---S-G
T ss_pred EEECCCCCEEEEEEEECCCCCE--EECCCCCH
T ss_conf 8866999679999673798666--88240155
No 5
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue .
Probab=55.21 E-value=3.9 Score=15.99 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=6.8
Q ss_pred EEECCCCEEEEE
Q ss_conf 896989779999
Q T0609 321 KTLKPNESWSGV 332 (340)
Q Consensus 321 ~~L~pGe~~~~~ 332 (340)
..|.||++.+..
T Consensus 230 ~~LDPGdSaS~v 241 (276)
T PF00845_consen 230 SSLDPGDSASQV 241 (276)
T ss_pred CCCCCCCCHHHH
T ss_conf 666988556663
No 6
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=34.12 E-value=8.5 Score=14.02 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCEEEEEEEEEEEECCEEEEEEEEEECCCHHHEECCCCCCE
Q ss_conf 88459999999980418999999994887031000013624
Q T0609 146 FSHEFQFKLSYELSSKGLKQTTSVVNLSSEEMPLSVGYHSA 186 (340)
Q Consensus 146 ~P~~~~~~~t~~l~~~~L~i~~~v~N~~~~~~p~~~~~H~Y 186 (340)
-|+.+++...+.-... .+.++++|.|.++..|...-+.|
T Consensus 5 lpy~~~v~~~~~~~~g--~l~L~l~N~G~~~~~~~v~~~~~ 43 (89)
T PF05506_consen 5 LPYEPEVDARYDAATG--NLRLTLANSGSAGATFTVYDNAY 43 (89)
T ss_pred CCCCCEEEEEEECCCC--EEEEEEEECCCCCEEEEEEECCC
T ss_conf 7878899999976899--89999995898758999992887
No 7
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0005515 protein binding, 0006915 apoptosis, 0005622 intracellular; PDB: 1ibx_B 1f2r_I 1c9f_A 2eel_A 1d4b_A.
Probab=16.78 E-value=15 Score=12.54 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=9.7
Q ss_pred CCEEECCCCEEE
Q ss_conf 768969897799
Q T0609 319 GFKTLKPNESWS 330 (340)
Q Consensus 319 g~~~L~pGe~~~ 330 (340)
-++.|.|||+|.
T Consensus 66 ~l~~L~~gq~W~ 77 (78)
T PF02017_consen 66 VLMVLEPGQKWT 77 (78)
T ss_dssp EEEEEESSS--S
T ss_pred EEEEECCCCCCC
T ss_conf 999987998248
No 8
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.
Probab=16.70 E-value=19 Score=12.03 Aligned_cols=62 Identities=5% Similarity=-0.062 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCEEEE---EEEEEECCCHHHEECCCCCCEEEC
Q ss_conf 3678748999999678986213488459999999980418999---999994887031000013624760
Q T0609 123 IDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKGLKQ---TTSVVNLSSEEMPLSVGYHSAFNV 189 (340)
Q Consensus 123 ~~~~~~~v~~~~~~~~~~~~~~~~P~~~~~~~t~~l~~~~L~i---~~~v~N~~~~~~p~~~~~H~YF~~ 189 (340)
.+.+++.+.+++--++.++.. +-+..+++..++..-++ +.-+-++|+.-+..--.+|-++.-
T Consensus 113 InRgGG~l~i~L~~s~~~~~~-----~~~~~v~V~~DG~~~t~~aG~~l~L~PGEsiTL~P~~~H~Fw~e 177 (225)
T PF07385_consen 113 INRGGGNLVIELYNSDPDGEK-----DEETPVTVPVDGIRRTVPAGGELRLSPGESITLPPGLYHWFWAE 177 (225)
T ss_pred EECCCCEEEEEEECCCCCCCC-----CCCCCEEEECCCEEEEECCCCEEEECCCCEEECCCCCEEEEEEC
T ss_conf 423796399999545875566-----77898588169947886799879989998474589971457607
No 9
>PF11320 DUF3122: Protein of unknown function (DUF3122)
Probab=15.55 E-value=20 Score=11.86 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCC--CCEEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 75359997113678--7489999996789862134884599999
Q T0609 113 NSKWTVHKKKIDQD--KALVEVVFDFTKENEAYKYFSHEFQFKL 154 (340)
Q Consensus 113 ~~~W~v~~~~~~~~--~~~v~~~~~~~~~~~~~~~~P~~~~~~~ 154 (340)
...|+++-++.... ...+.+++. |||+.+++..
T Consensus 26 g~sWQvV~fkr~~~~~~~~i~LRLV---------GfPG~~~~~H 60 (134)
T PF11320_consen 26 GQSWQVVLFKRIKPGEEKPINLRLV---------GFPGSVRFDH 60 (134)
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEE---------CCCCCEEECC
T ss_conf 9945999997248888884699995---------0788577459
No 10
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates . The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity , , .; PDB: 1tza_A 1xvs_A 2f1e_A 1xq4_B.
Probab=15.48 E-value=20 Score=11.85 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=0.0
Q ss_pred EECCCCEEEEEEEEEEE
Q ss_conf 96989779999999998
Q T0609 322 TLKPNESWSGVCKLYIE 338 (340)
Q Consensus 322 ~L~pGe~~~~~~~~~ve 338 (340)
+|+|||+|++.....++
T Consensus 58 ~L~pGe~f~Y~S~~~L~ 74 (90)
T PF04379_consen 58 VLRPGESFEYTSGCPLS 74 (90)
T ss_dssp EE-TTEEEEEEE-EEES
T ss_pred EECCCCCEEECCCCCCC
T ss_conf 39799977982887936
Done!