Query T0610 YP_324426.1 , Anabaena variab ilis ATCC 29413, 186 residues Match_columns 186 No_of_seqs 109 out of 1632 Neff 8.4 Searched_HMMs 22458 Date Mon Jul 5 08:59:03 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0610.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0610.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1wdj_A Hypothetical protein TT 100.0 1.6E-37 6.9E-42 238.1 12.0 176 5-182 7-187 (187) 2 3ijm_A Uncharacterized restric 95.5 0.11 4.7E-06 28.0 10.2 106 37-156 25-133 (151) 3 3dnx_A Uncharacterized protein 67.5 5.2 0.00023 18.1 7.1 78 45-143 13-90 (153) 4 1nxu_A Hypothetical oxidoreduc 21.3 33 0.0015 13.4 3.4 41 103-147 165-207 (333) 5 1ka1_A Halotolerance protein H 11.5 51 0.0023 12.3 0.6 10 107-116 232-241 (357) 6 3lv0_A Extragenic suppressor p 11.1 52 0.0023 12.2 0.6 17 134-150 118-134 (267) 7 2pcr_A Inositol-1-monophosphat 10.7 56 0.0025 12.0 0.6 16 135-150 115-130 (264) 8 1lbv_A Fbpase/impase, fructose 10.0 61 0.0027 11.8 0.6 12 134-145 76-87 (252) 9 2jro_A Uncharacterized protein 9.5 70 0.0031 11.5 3.3 32 23-54 31-62 (78) 10 2qfl_A Inositol-1-monophosphat 9.4 60 0.0027 11.8 0.4 12 134-145 78-89 (267) No 1 >1wdj_A Hypothetical protein TT1808; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.52.1.27 Probab=100.00 E-value=1.6e-37 Score=238.15 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=147.6 Q ss_pred CCCCCCHHHHHHCCCCCC--CEEE-ECCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE-EEEEEC-CCCCCCC Q ss_conf 887558899985216898--4898-8788998169893103688999999998521389579855-568505-8775235 Q T0610 5 PSKPITLDEFLKLPETEP--ASEY-IEGKIIQKPMPQGKHSAIQSECVSVINSVVKPQRIARAFL-ELRCTF-GDHSTVP 79 (186) Q Consensus 5 ~~~~~T~ee~~~~~~~~~--r~El-idG~iv~~~~~~~~H~~i~~~L~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~P 79 (186) ..|++|+|||++|+++++ |+|+ ++|+|++|| ++..|+.++.++...|..+++..+++.+.. ...+.. +.+.+.| T Consensus 7 ~~~~~T~ee~~~l~e~~p~~~~e~~i~G~l~~~P-~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~v~l~~~~~~~P 85 (187) T 1wdj_A 7 LARPVSEEELRRLSELNPGYQWERSPEGRLWVSP-TGGESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGSILSP 85 (187) T ss_dssp CSSCCCHHHHHHHHHHSTTEEEEECTTSCEEEEE-CCHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCEECTTSCEECC T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEECCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCEECC T ss_conf 6789999999988863988479996684999968-998236899999999999886539928961052798399742068 Q ss_pred CEEEEECCCCCCCCCCCCCCCEECCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEEC Q ss_conf 42798434110004645443100111699998438870367777789888458965999960578999999479746881 Q T0610 80 DISVFIWSRIPREENGEIANIFLIAPDWTIEILSPDQSQTKVTKNILHCLKHGTQMGWLIDPDEQTVFVYRPQQETEVFD 159 (186) Q Consensus 80 Dv~v~~~~~~~~~~~~~~~~~~~~~P~LvVEV~Sps~~~~D~~~K~~~Y~~~Gv~~ywiVdp~~~~v~v~~~~~~~~~~~ 159 (186) |+++++.++............+..+|+|||||+|||+..+|+..|+..|+++||++||||||+.++|++|++++..+++. T Consensus 86 Dv~~~~~~~~~~~~~~~~~~~~~~~P~LVVEV~Sps~~~~D~~~K~~~Y~~~Gv~eyWiVDp~~~~v~vy~~~~~~~~~~ 165 (187) T 1wdj_A 86 DAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPPLRLE 165 (187) T ss_dssp SEEEEEHHHHHTSCHHHHHSSCBSCCSEEEEECCTTSCHHHHHHHHHHHHHTTCSEEEEEETTTTEEEEECTTSCCEEEE T ss_pred CCEEEECHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCEEEEC T ss_conf 60288010202467545555255673489999648864789999999888769978999941788999997799639974 Q ss_pred CCCCEEECCCCCCCCEEEHHHHH Q ss_conf 68724433333668777388985 Q T0610 160 EPDALVPVPSFASELHLSIKDLF 182 (186) Q Consensus 160 ~~d~~~~~~~~~p~l~l~v~~lf 182 (186) ..+.+. .+.++|||+|++++|| T Consensus 166 ~~~~l~-~~~~lpg~~l~v~~lF 187 (187) T 1wdj_A 166 GVERVS-LDPELPGFALSLPPLW 187 (187) T ss_dssp SCSEEE-CTTTSTTCEEECGGGC T ss_pred CCCEEE-CCCCCCCEEEEHHHHC T ss_conf 898788-3785788098889939 No 2 >3ijm_A Uncharacterized restriction endonuclease-like fold superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily; 1.70A {Spirosoma linguale dsm 74} Probab=95.47 E-value=0.11 Score=27.99 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=73.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCEEEEEEEECCC Q ss_conf 89310368899999999852138957-98555685058775235427984341100046454431001116999984388 Q T0610 37 PQGKHSAIQSECVSVINSVVKPQRIA-RAFLELRCTFGDHSTVPDISVFIWSRIPREENGEIANIFLIAPDWTIEILSPD 115 (186) Q Consensus 37 ~~~~H~~i~~~L~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~PDv~v~~~~~~~~~~~~~~~~~~~~~P~LvVEV~Sps 115 (186) +...|+++.++|+.-|+.....+.+. ...++..+..+....+||+..+-... . ..| .+|||.-.+ T Consensus 25 AP~dHQ~iIskLt~gLg~LY~~kaI~~ePLPETmLdeg~~s~vPD~~LyD~~~-------~------~t~-vIIEVC~~~ 90 (151) T 3ijm_A 25 APIIHQSVIARLTAGLYPLYQSKKIPFEPLPETMLTEGYSSPVPDVLLYDHQT-------E------EAK-VIIEVCQNS 90 (151) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSSEEEESCCSSSSTTSCCCSEEEEETTT-------T------EEE-EEEEEECGG T ss_pred CCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHCCCCCCCCCCEEEECCCC-------C------CCC-EEEEEHHCC T ss_conf 74289999999874144320225345654871110158888899777640544-------5------687-786502025 Q ss_pred CCHHHHHHHHHH--HHHCCCCEEEEEECCCCEEEEEEECCCCE Q ss_conf 703677777898--88458965999960578999999479746 Q T0610 116 QSQTKVTKNILH--CLKHGTQMGWLIDPDEQTVFVYRPQQETE 156 (186) Q Consensus 116 ~~~~D~~~K~~~--Y~~~Gv~~ywiVdp~~~~v~v~~~~~~~~ 156 (186) -.+.|+..-++. =...||.|..+.+-+.++=.-||.++.+. T Consensus 91 GlK~Dl~Kvi~LIeD~~YgIlEGFvynYkt~~W~rYR~Gd~G~ 133 (151) T 3ijm_A 91 GLKHDTSKIVKLIEDNAYGILEGFVFNYKTQQWLRYRLGDGGV 133 (151) T ss_dssp GHHHHHHHHHHHHHSSCSCCCEEEEEETTTTEEEEEETTSTTC T ss_pred CCCCCHHHHHHHHHCCCCCHHEEEEEECCCCEEEEEECCCCCC T ss_conf 7633188888776157622110013430244057886179961 No 3 >3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi} Probab=67.51 E-value=5.2 Score=18.06 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=47.8 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCEEEEEEEECCCCCHHHHHHH Q ss_conf 89999999985213895798555685058775235427984341100046454431001116999984388703677777 Q T0610 45 QSECVSVINSVVKPQRIARAFLELRCTFGDHSTVPDISVFIWSRIPREENGEIANIFLIAPDWTIEILSPDQSQTKVTKN 124 (186) Q Consensus 45 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~PDv~v~~~~~~~~~~~~~~~~~~~~~P~LvVEV~Sps~~~~D~~~K 124 (186) .+.|.+-...++...+... ..++.. .+.+.-|++-+.. ++. -.+|||=| |-...--..| T Consensus 13 ~q~i~RGv~R~l~~~g~a~-l~E~~l---~~GRRaDv~al~~-------kGe---------i~IVEiKS-s~~DF~sD~K 71 (153) T 3dnx_A 13 GQRLARGVARHLRAHGFVS-VEEFVP---ARGLRVDVMGLGP-------KGE---------IWVIECKS-SRADFQADAK 71 (153) T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEECS---STTCCEEEEEECT-------TCC---------EEEEEECS-SHHHHHHTTT T ss_pred HHHHHHHHHHHHHHCCCCE-EEEECC---CCCCEEEEEEECC-------CCC---------EEEEEEEC-CHHHHCCCCC T ss_conf 8899999999999779956-666516---8997788999889-------995---------99999846-7888515465 Q ss_pred HHHHHHCCCCEEEEEECCC Q ss_conf 8988845896599996057 Q T0610 125 ILHCLKHGTQMGWLIDPDE 143 (186) Q Consensus 125 ~~~Y~~~Gv~~ywiVdp~~ 143 (186) -..|+..-=+-||-|++.- T Consensus 72 W~~Yl~~cDrfyfAV~~~f 90 (153) T 3dnx_A 72 WQGYLEWCDRYFWAVDMEF 90 (153) T ss_dssp GGGGGGGCSEEEEEECTTS T ss_pred HHHHHHHHHHHEECCCCCC T ss_conf 1778997662101168789 No 4 >1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A* Probab=21.31 E-value=33 Score=13.39 Aligned_cols=41 Identities=10% Similarity=-0.072 Sum_probs=27.8 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCEEE Q ss_conf 111699998438870367777789888458--965999960578999 Q T0610 103 IAPDWTIEILSPDQSQTKVTKNILHCLKHG--TQMGWLIDPDEQTVF 147 (186) Q Consensus 103 ~~P~LvVEV~Sps~~~~D~~~K~~~Y~~~G--v~~ywiVdp~~~~v~ 147 (186) ..|.+++-. +.|.... -|+..+++.| +|+.|.+|.+.+-.+ T Consensus 165 ~~~p~vlDm-AtS~va~---gki~~a~~~g~~iP~gwa~D~~G~pTt 207 (333) T 1nxu_A 165 STPITMVDM-SMSMFSY---GMLEVNRLAGRQLPVDGGFDDEGNLTK 207 (333) T ss_dssp CSSCEEEEE-CSBSSCH---HHHHHHHHTTCCCSSCCEECTTSSEEC T ss_pred CCCCEEEEE-ECCCCCH---HHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 999427885-1463230---399999974998998754178998678 No 5 >1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol, hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae} SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A* Probab=11.48 E-value=51 Score=12.27 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=3.6 Q ss_pred EEEEEECCCC Q ss_conf 9999843887 Q T0610 107 WTIEILSPDQ 116 (186) Q Consensus 107 LvVEV~Sps~ 116 (186) +++...+.+. T Consensus 232 ~~~~~~~~~~ 241 (357) T 1ka1_A 232 ITLEGVEKGH 241 (357) T ss_dssp EEEECSCTTT T ss_pred CCCCCCCCCC T ss_conf 1332245443 No 6 >3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural genomics center for infectious disease, ssgcid, CAT scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A Probab=11.13 E-value=52 Score=12.19 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=8.9 Q ss_pred CEEEEEECCCCEEEEEE Q ss_conf 65999960578999999 Q T0610 134 QMGWLIDPDEQTVFVYR 150 (186) Q Consensus 134 ~~ywiVdp~~~~v~v~~ 150 (186) ..-++.+|.......-. T Consensus 118 v~gvI~~P~~~~~~~a~ 134 (267) T 3lv0_A 118 VAGVIYNPINDELFTAE 134 (267) T ss_dssp EEEEEEETTTTEEEEEE T ss_pred EEEEECCCCCCCEEEEE T ss_conf 99997346679679975 No 7 >2pcr_A Inositol-1-monophosphatase; bipolar disorder, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.60A {Aquifex aeolicus VF5} Probab=10.67 E-value=56 Score=12.03 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=7.8 Q ss_pred EEEEEECCCCEEEEEE Q ss_conf 5999960578999999 Q T0610 135 MGWLIDPDEQTVFVYR 150 (186) Q Consensus 135 ~ywiVdp~~~~v~v~~ 150 (186) .-++.+|....+..-. T Consensus 115 ~gvv~~P~~~~~~~A~ 130 (264) T 2pcr_A 115 VGAVYLPYFDKLYWGA 130 (264) T ss_dssp EEEEEETTTTEEEEEE T ss_pred EEEEECCCCCCEEEEE T ss_conf 9999416889789997 No 8 >1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol monophosphatase; dual activity, archaeal phosphatase, APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus} SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A* Probab=10.01 E-value=61 Score=11.80 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=0.0 Q ss_pred CEEEEEECCCCE Q ss_conf 659999605789 Q T0610 134 QMGWLIDPDEQT 145 (186) Q Consensus 134 ~~ywiVdp~~~~ 145 (186) ..+|+|||-+.+ T Consensus 76 ~~~wiIDPIDGT 87 (252) T 1lbv_A 76 DVFVALDPLDGT 87 (252) T ss_dssp SEEEEEEEEECH T ss_pred CEEEEEECCCCH T ss_conf 759999725487 No 9 >2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} Probab=9.51 E-value=70 Score=11.47 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=0.0 Q ss_pred CEEEECCEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 48988788998169893103688999999998 Q T0610 23 ASEYIEGKIIQKPMPQGKHSAIQSECVSVINS 54 (186) Q Consensus 23 r~ElidG~iv~~~~~~~~H~~i~~~L~~~l~~ 54 (186) ++|+.+|.+..-.-...+|-.+++.++..+.. T Consensus 31 ~FeFd~GkvllP~~~d~~~~~~~sEVN~~I~~ 62 (78) T 2jro_A 31 RLEFEKGRFLLPRKSLPKVKQAILELNELIEA 62 (78) T ss_dssp EEEEETTEECCCSSCCHHHHHHHHHHHHHHHH T ss_pred CEEECCCEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 67873888967833058999999999999999 No 10 >2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor, dimerization, hydrolase; 1.90A {Escherichia coli} Probab=9.40 E-value=60 Score=11.85 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=0.0 Q ss_pred CEEEEEECCCCE Q ss_conf 659999605789 Q T0610 134 QMGWLIDPDEQT 145 (186) Q Consensus 134 ~~ywiVdp~~~~ 145 (186) ..+|+|||-+.+ T Consensus 78 ~~~WiiDPIDGT 89 (267) T 2qfl_A 78 DVQWVIDPLDGT 89 (267) T ss_dssp EEEEEEEEEECH T ss_pred CCEEEEECCCCH T ss_conf 888999657298 Done!