HHsearch: T0610 VS scop

Query         T0610 YP_324426.1  , Anabaena variab ilis ATCC 29413, 186 residues
Match_columns 186
No_of_seqs    109 out of 1632
Neff          8.4 
Searched_HMMs 15564
Date          Mon Jul  5 09:00:18 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0610.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0610.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wdja_ c.52.1.27 (A:) Hypothe 100.0   3E-38   2E-42  241.4  11.7  180    1-182     2-186 (186)
  2 d1nxua_ c.122.1.1 (A:) 2,3-dik  15.6      31   0.002   12.6   3.5   40  103-146   165-206 (332)
  3 d2i7ra1 d.32.1.2 (A:1-115) Hyp  11.8      40  0.0026   11.9   3.0   21  131-151    94-114 (115)
  4 d1lbva_ e.7.1.1 (A:) Archaeal    8.9      50  0.0032   11.4   0.6   10  137-146   116-125 (252)
  5 d1nj1a1 c.51.1.1 (A:284-410) P   8.9      51  0.0033   11.3   5.4   48  107-157    44-94  (127)
  6 d1hc7a1 c.51.1.1 (A:277-403) P   8.4      53  0.0034   11.2   4.1   34  121-154    56-92  (127)
  7 d1u6ka1 c.127.1.1 (A:2-283) F4   8.4      54  0.0035   11.2   4.8   68  104-172    63-131 (282)
  8 d1vdwa_ e.7.1.1 (A:) Archaeal    8.2      55  0.0035   11.1   0.6   16  134-149   111-126 (253)
  9 d3ctaa2 b.43.5.2 (A:90-220) CT   8.2      55  0.0035   11.1   1.3   18  105-123   102-119 (131)
 10 d1jp4a_ e.7.1.1 (A:) PIPase {R   8.0      55  0.0036   11.1   0.5   12  134-145   107-118 (304)

No 1  
>d1wdja_ c.52.1.27 (A:) Hypothetical protein TT1808 (TTHA1514) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3e-38  Score=241.38  Aligned_cols=180  Identities=19%  Similarity=0.276  Sum_probs=149.0

Q ss_pred             CCCCCCCCCCHHHHHHCCCCCC--CEEE-ECCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE-EEEEEECC-CC
Q ss_conf             9756887558899985216898--4898-878899816989310368899999999852138957985-55685058-77
Q T0610             1 MVQTPSKPITLDEFLKLPETEP--ASEY-IEGKIIQKPMPQGKHSAIQSECVSVINSVVKPQRIARAF-LELRCTFG-DH   75 (186)
Q Consensus         1 M~~~~~~~~T~ee~~~~~~~~~--r~El-idG~iv~~~~~~~~H~~i~~~L~~~l~~~~~~~~~~~~~-~~~~~~~~-~~   75 (186)
                      |+....|++|.|||++|++.++  |+|+ +||+|++||++ ..|+.++.++...|..+....+++.++ ....+... .+
T Consensus         2 ~~~~~~r~~T~eE~~~l~e~~p~~~~e~li~G~l~~~p~~-~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~v~l~~~~   80 (186)
T d1wdja_           2 LVLDLARPVSEEELRRLSELNPGYQWERSPEGRLWVSPTG-GESGRRSLQLAYQLARWNEERGLGVVFDSSTGFKFPDGS   80 (186)
T ss_dssp             EEECCSSCCCHHHHHHHHHHSTTEEEEECTTSCEEEEECC-HHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCEECTTSC
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCC
T ss_conf             5466578899999998886098827999678499996899-823789999999999987644984582466069869973


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCEECCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             52354279843411000464544310011169999843887036777778988845896599996057899999947974
Q T0610            76 STVPDISVFIWSRIPREENGEIANIFLIAPDWTIEILSPDQSQTKVTKNILHCLKHGTQMGWLIDPDEQTVFVYRPQQET  155 (186)
Q Consensus        76 ~~~PDv~v~~~~~~~~~~~~~~~~~~~~~P~LvVEV~Sps~~~~D~~~K~~~Y~~~Gv~~ywiVdp~~~~v~v~~~~~~~  155 (186)
                      .+.||+++++.++............+.++|+|||||+|||++..|+..|+.+|+++||++||||||+.++|++||+++..
T Consensus        81 ~~~PDv~v~~~e~~~~~~~~~~~~~~~~~P~LvvEV~Sps~~~~D~~~K~~~Y~~~Gv~eywivDp~~~~v~vyr~~~~~  160 (186)
T d1wdja_          81 ILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAKMGIYLRNGVLLGVLVDPYARAVEVFRPGKPP  160 (186)
T ss_dssp             EECCSEEEEEHHHHHTSCHHHHHSSCBSCCSEEEEECCTTSCHHHHHHHHHHHHHTTCSEEEEEETTTTEEEEECTTSCC
T ss_pred             EECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf             52687328834300246765645524566318999970786477899999988866997899994278899999779962


Q ss_pred             EEECCCCCEEECCCCCCCCEEEHHHHH
Q ss_conf             688168724433333668777388985
Q T0610           156 EVFDEPDALVPVPSFASELHLSIKDLF  182 (186)
Q Consensus       156 ~~~~~~d~~~~~~~~~p~l~l~v~~lf  182 (186)
                      +++...+++. .+.++|||+|++++||
T Consensus       161 ~~~~~~~~l~-~~~~lPgf~l~v~~lf  186 (186)
T d1wdja_         161 LRLEGVERVS-LDPELPGFALSLPPLW  186 (186)
T ss_dssp             EEEESCSEEE-CTTTSTTCEEECGGGC
T ss_pred             EEECCCCEEE-CCCCCCCEEEEHHHHC
T ss_conf             9983898788-4775798198889939


No 2  
>d1nxua_ c.122.1.1 (A:) 2,3-diketogulonate oxidoreductase (YiaK) {Escherichia coli [TaxId: 562]} SCOP: d1s20g_ d1s20f_ d1s20a_ d1nxub_ d1rfma_
Probab=15.58  E-value=31  Score=12.60  Aligned_cols=40  Identities=10%  Similarity=-0.046  Sum_probs=27.2

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCEE
Q ss_conf             111699998438870367777789888458--96599996057899
Q T0610           103 IAPDWTIEILSPDQSQTKVTKNILHCLKHG--TQMGWLIDPDEQTV  146 (186)
Q Consensus       103 ~~P~LvVEV~Sps~~~~D~~~K~~~Y~~~G--v~~ywiVdp~~~~v  146 (186)
                      ..+.+++-. |.|....   .|+..+++.|  +|+-|.+|...+-.
T Consensus       165 ~~~p~~lD~-atS~va~---gki~~a~~~g~~iP~~wa~D~~G~pT  206 (332)
T d1nxua_         165 STPITMVDM-SMSMFSY---GMLEVNRLAGRQLPVDGGFDDEGNLT  206 (332)
T ss_dssp             CSSCEEEEE-CSBSSCH---HHHHHHHHTTCCCSSCCEECTTSSEE
T ss_pred             CCCEEEEEH-HHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             997058870-0233017---89999998098688776548787755


No 3  
>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=11.76  E-value=40  Score=11.94  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=15.1

Q ss_pred             CCCCEEEEEECCCCEEEEEEE
Q ss_conf             589659999605789999994
Q T0610           131 HGTQMGWLIDPDEQTVFVYRP  151 (186)
Q Consensus       131 ~Gv~~ywiVdp~~~~v~v~~~  151 (186)
                      .|....++.||....+++|+.
T Consensus        94 ~g~~~~~~~DPdGn~ie~~~~  114 (115)
T d2i7ra1          94 WGTESLLVQGPAGLVLDFYRM  114 (115)
T ss_dssp             TSCEEEEEECGGGCEEEEEEC
T ss_pred             CCEEEEEEECCCCCEEEEEEE
T ss_conf             770999999999999999996


No 4  
>d1lbva_ e.7.1.1 (A:) Archaeal inositol monophosphatase/fructose-1,6-bisphosphatase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.92  E-value=50  Score=11.40  Aligned_cols=10  Identities=0%  Similarity=0.062  Sum_probs=4.5

Q ss_pred             EEEECCCCEE
Q ss_conf             9996057899
Q T0610           137 WLIDPDEQTV  146 (186)
Q Consensus       137 wiVdp~~~~v  146 (186)
                      ++.+|..+..
T Consensus       116 vi~~P~~~~~  125 (252)
T d1lbva_         116 YVYNLATGDE  125 (252)
T ss_dssp             EEEETTTCCE
T ss_pred             HHHHHHHHHH
T ss_conf             5565443322


No 5  
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=8.91  E-value=51  Score=11.33  Aligned_cols=48  Identities=10%  Similarity=0.243  Sum_probs=34.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC---CCCEEEEEEECCCCEE
Q ss_conf             99998438870367777789888458965999960---5789999994797468
Q T0610           107 WTIEILSPDQSQTKVTKNILHCLKHGTQMGWLIDP---DEQTVFVYRPQQETEV  157 (186)
Q Consensus       107 LvVEV~Sps~~~~D~~~K~~~Y~~~Gv~~ywiVdp---~~~~v~v~~~~~~~~~  157 (186)
                      +-+++-   ++..-.+.|+..+...|+|...+|.+   .+++|++.+++...+.
T Consensus        44 i~v~~D---~r~~~~g~K~~~a~~~giP~~iiiG~ke~~~~~v~l~~r~~~~~~   94 (127)
T d1nj1a1          44 FRVHLD---DRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKV   94 (127)
T ss_dssp             CCEEEC---CCSSCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEE
T ss_pred             CCEEEE---ECCCHHHHHHHHHHHHCCCHHEEECCCCCCCCEEEEEECCCCCEE
T ss_conf             856987---512027799999876327530355300200677999984799577


No 6  
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}
Probab=8.43  E-value=53  Score=11.21  Aligned_cols=34  Identities=6%  Similarity=-0.014  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHCCCCEEEEEEC---CCCEEEEEEECCC
Q ss_conf             777789888458965999960---5789999994797
Q T0610           121 VTKNILHCLKHGTQMGWLIDP---DEQTVFVYRPQQE  154 (186)
Q Consensus       121 ~~~K~~~Y~~~Gv~~ywiVdp---~~~~v~v~~~~~~  154 (186)
                      .+.|+..+...|+|...+|-+   ..++|++.+++..
T Consensus        56 ~g~K~~~a~~~giP~~iiiG~~e~~~~~v~v~~R~~~   92 (127)
T d1hc7a1          56 PGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGG   92 (127)
T ss_dssp             HHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTSC
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHCCCEEEEEECCCC
T ss_conf             8899999986148806774525550766999951577


No 7  
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=8.35  E-value=54  Score=11.19  Aligned_cols=68  Identities=15%  Similarity=0.051  Sum_probs=42.4

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEE-EEEEECCCCEEECCCCCEEECCCCCC
Q ss_conf             1169999843887036777778988845896599996057899-99994797468816872443333366
Q T0610           104 APDWTIEILSPDQSQTKVTKNILHCLKHGTQMGWLIDPDEQTV-FVYRPQQETEVFDEPDALVPVPSFAS  172 (186)
Q Consensus       104 ~P~LvVEV~Sps~~~~D~~~K~~~Y~~~Gv~~ywiVdp~~~~v-~v~~~~~~~~~~~~~d~~~~~~~~~p  172 (186)
                      .|+++|=| ||.-..---..-+..+.++|+|-+.|=|--..+. .-....+-++++-..|..+++-.-|.
T Consensus        63 ~pDf~i~i-sPN~a~PGP~~ARE~l~~~giP~ivI~D~p~~k~~d~~~~~gfGYIi~k~DpMIGArREFL  131 (282)
T d1u6ka1          63 EPDFIVYG-GPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPDAMLGARREFL  131 (282)
T ss_dssp             CCSEEEEE-CSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTSCCCCCCTTTC
T ss_pred             CCCEEEEE-CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHC
T ss_conf             99989997-8988899957799999756998799758852546899986588579972676444234203


No 8  
>d1vdwa_ e.7.1.1 (A:) Archaeal inositol monophosphatase/fructose-1,6-bisphosphatase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.18  E-value=55  Score=11.14  Aligned_cols=16  Identities=6%  Similarity=0.235  Sum_probs=8.0

Q ss_pred             CEEEEEECCCCEEEEE
Q ss_conf             6599996057899999
Q T0610           134 QMGWLIDPDEQTVFVY  149 (186)
Q Consensus       134 ~~ywiVdp~~~~v~v~  149 (186)
                      ..-++.+|.......-
T Consensus       111 ~~gvv~~P~~~~~~~a  126 (253)
T d1vdwa_         111 IYAFIYEPIVERLYEG  126 (253)
T ss_dssp             EEEEEEEGGGTEEEEE
T ss_pred             EECCCCCCCCCCCCCC
T ss_conf             6401258643210102


No 9  
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.17  E-value=55  Score=11.14  Aligned_cols=18  Identities=28%  Similarity=0.399  Sum_probs=12.6

Q ss_pred             EEEEEEEECCCCCHHHHHH
Q ss_conf             1699998438870367777
Q T0610           105 PDWTIEILSPDQSQTKVTK  123 (186)
Q Consensus       105 P~LvVEV~Sps~~~~D~~~  123 (186)
                      |+ ++||+||...+.-+..
T Consensus       102 ~d-vvEiIap~~LRe~L~L  119 (131)
T d3ctaa2         102 TD-VIEIISDKYLREEINL  119 (131)
T ss_dssp             CS-EEEEECC---------
T ss_pred             CC-EEEEECCHHHHHHCCC
T ss_conf             98-8999888505855699


No 10 
>d1jp4a_ e.7.1.1 (A:) PIPase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.98  E-value=55  Score=11.11  Aligned_cols=12  Identities=25%  Similarity=0.385  Sum_probs=0.0

Q ss_pred             CEEEEEECCCCE
Q ss_conf             659999605789
Q T0610           134 QMGWLIDPDEQT  145 (186)
Q Consensus       134 ~~ywiVdp~~~~  145 (186)
                      ..+|+|||-+.+
T Consensus       107 ~~~WiIDPIDGT  118 (304)
T d1jp4a_         107 DLVVWVDPVDGT  118 (304)
T ss_dssp             GEEEEEEEEECH
T ss_pred             CCEEEECCCCCC
T ss_conf             746997676681


Done!