Query T0611 YP_960827.1, Marinobacter aquaeolei vt8, 227 residues Match_columns 227 No_of_seqs 159 out of 8127 Neff 9.5 Searched_HMMs 22458 Date Mon Jul 5 09:11:42 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0611.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0611.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1pb6_A Hypothetical transcript 99.9 2.8E-20 1.3E-24 170.1 21.5 193 4-199 18-211 (212) 2 1vi0_A Transcriptional regulat 99.9 6.2E-20 2.8E-24 167.5 23.1 162 1-162 1-170 (206) 3 3dew_A Transcriptional regulat 99.9 2.1E-20 9.5E-25 171.0 19.7 142 4-145 8-150 (206) 4 3f0c_A TETR-molecule A, transc 99.9 1.9E-19 8.3E-24 164.0 23.1 188 4-195 11-201 (216) 5 3g1l_A Transcriptional regulat 99.9 1.8E-19 8E-24 164.1 22.5 141 4-144 44-187 (256) 6 1t56_A EThr repressor; helix-t 99.9 4.9E-19 2.2E-23 160.8 24.0 141 4-144 24-167 (216) 7 1rkt_A Protein YFIR; transcrip 99.9 1.3E-19 5.8E-24 165.1 20.9 141 4-144 12-156 (205) 8 3dcf_A Transcriptional regulat 99.9 3.3E-19 1.5E-23 162.1 23.0 146 4-149 31-178 (218) 9 3lwj_A Putative TETR-family tr 99.9 1E-18 4.6E-23 158.4 25.1 143 4-146 12-155 (202) 10 2qtq_A Transcriptional regulat 99.9 6.6E-19 2.9E-23 159.8 24.0 142 4-145 16-161 (213) 11 2id6_A Transcriptional regulat 99.9 3.6E-19 1.6E-23 161.8 22.0 143 2-144 3-148 (202) 12 3him_A Probable transcriptiona 99.9 5.7E-19 2.5E-23 160.3 21.6 160 3-162 15-176 (211) 13 2hyj_A Putative TETR-family tr 99.8 1.1E-18 5E-23 158.1 22.8 142 3-144 11-158 (200) 14 3cdl_A Transcriptional regulat 99.8 4E-20 1.8E-24 169.0 15.3 146 3-148 8-156 (203) 15 2ibd_A Possible transcriptiona 99.8 2.1E-19 9.3E-24 163.6 18.1 141 4-144 14-157 (204) 16 3eup_A Transcriptional regulat 99.8 4.4E-19 1.9E-23 161.2 19.6 148 4-151 11-166 (204) 17 3he0_A Transcriptional regulat 99.8 4.1E-19 1.8E-23 161.4 19.4 145 3-147 10-155 (196) 18 3lhq_A Acrab operon repressor 99.8 2.9E-18 1.3E-22 155.0 23.6 160 3-162 13-182 (220) 19 3crj_A Transcription regulator 99.8 6.1E-19 2.7E-23 160.1 19.8 151 3-154 13-167 (199) 20 1ui5_A A-factor receptor homol 99.8 1.1E-19 5.1E-24 165.5 15.8 198 4-214 9-210 (215) 21 2zcm_A Biofilm operon icaabcd 99.8 1.1E-18 5E-23 158.1 20.8 182 6-198 9-191 (192) 22 2nx4_A Transcriptional regulat 99.8 3.4E-18 1.5E-22 154.5 22.9 142 4-145 10-154 (194) 23 2hyt_A TETR-family transcripti 99.8 3.4E-19 1.5E-23 162.0 17.6 143 4-149 12-155 (197) 24 3knw_A Putative transcriptiona 99.8 1.2E-18 5.2E-23 158.0 20.3 141 4-144 14-161 (212) 25 2gen_A Probable transcriptiona 99.8 9.5E-19 4.2E-23 158.6 19.6 159 4-162 7-169 (197) 26 2iai_A Putative transcriptiona 99.8 4.3E-19 1.9E-23 161.2 17.2 139 4-143 30-169 (230) 27 3c07_A Putative TETR-family tr 99.8 1.6E-18 6.9E-23 157.0 19.7 160 4-163 41-204 (273) 28 3kz9_A SMCR; transcriptional r 99.8 1.3E-18 5.6E-23 157.7 19.1 142 3-144 16-159 (206) 29 2g7s_A Transcriptional regulat 99.8 4E-18 1.8E-22 154.0 21.3 141 4-144 8-153 (194) 30 2hku_A A putative transcriptio 99.8 3.6E-18 1.6E-22 154.3 21.2 139 4-143 20-159 (215) 31 3bqz_B HTH-type transcriptiona 99.8 7.1E-19 3.2E-23 159.6 17.4 146 3-148 1-149 (194) 32 2id3_A Putative transcriptiona 99.8 6.3E-18 2.8E-22 152.5 22.1 138 3-144 39-178 (225) 33 2rae_A Transcriptional regulat 99.8 1.4E-19 6.2E-24 164.9 13.4 138 4-143 17-154 (207) 34 2xdn_A HTH-type transcriptiona 99.8 8.7E-18 3.9E-22 151.4 22.6 159 4-162 11-179 (210) 35 2f07_A YVDT; helix-turn-helix, 99.8 2.8E-18 1.3E-22 155.1 20.1 139 4-143 10-149 (197) 36 2jj7_A Hemolysin II regulatory 99.8 3.5E-20 1.6E-24 169.4 10.1 146 1-146 2-149 (186) 37 3f1b_A TETR-like transcription 99.8 1.9E-18 8.4E-23 156.4 18.7 145 5-153 15-160 (203) 38 2g3b_A Putative TETR-family tr 99.8 3.4E-18 1.5E-22 154.5 19.8 159 4-162 3-167 (208) 39 2pz9_A Putative regulatory pro 99.8 7.7E-19 3.4E-23 159.3 16.3 136 4-145 30-165 (226) 40 2qwt_A Transcriptional regulat 99.8 5E-19 2.2E-23 160.7 14.8 137 4-144 13-149 (196) 41 3gzi_A Transcriptional regulat 99.8 1.2E-18 5.4E-23 157.8 16.6 140 4-144 17-159 (218) 42 2eh3_A Transcriptional regulat 99.8 7.9E-18 3.5E-22 151.7 20.5 126 3-133 1-126 (179) 43 3bru_A Regulatory protein, TET 99.8 1.2E-17 5.3E-22 150.4 21.4 140 4-143 30-176 (222) 44 3bhq_A Transcriptional regulat 99.8 6.9E-18 3.1E-22 152.2 20.0 144 4-147 12-162 (211) 45 2w53_A Repressor, SMet; antibi 99.8 1.6E-17 7.3E-22 149.3 21.9 159 4-162 11-178 (219) 46 2qib_A TETR-family transcripti 99.8 2.2E-17 9.8E-22 148.4 22.5 129 4-137 13-143 (231) 47 2np5_A Transcriptional regulat 99.8 8.6E-18 3.8E-22 151.5 20.3 128 3-130 8-138 (203) 48 3dpj_A Transcription regulator 99.8 3.9E-18 1.7E-22 154.0 18.2 144 3-150 7-155 (194) 49 3e7q_A Transcriptional regulat 99.8 6E-18 2.7E-22 152.6 19.0 142 4-145 14-160 (215) 50 2zb9_A Putative transcriptiona 99.8 2.6E-17 1.1E-21 147.9 21.6 137 4-144 23-162 (214) 51 2o7t_A Transcriptional regulat 99.8 5.2E-18 2.3E-22 153.1 17.8 140 3-145 7-147 (199) 52 3mvp_A TETR/ACRR transcription 99.8 1.5E-17 6.8E-22 149.6 20.1 138 3-140 25-168 (217) 53 2d6y_A Putative TETR family re 99.8 3.1E-18 1.4E-22 154.8 16.5 131 4-144 8-142 (202) 54 2ras_A Transcriptional regulat 99.8 8E-18 3.6E-22 151.7 18.4 142 4-145 11-154 (212) 55 3geu_A Intercellular adhesion 99.8 4.6E-18 2E-22 153.5 16.9 143 4-148 3-146 (189) 56 2gfn_A HTH-type transcriptiona 99.8 3.8E-18 1.7E-22 154.1 16.1 141 4-144 9-154 (209) 57 2rek_A Putative TETR-family tr 99.8 4.6E-18 2.1E-22 153.5 16.0 139 4-144 16-154 (199) 58 2i10_A Putative TETR transcrip 99.8 2.3E-18 1E-22 155.8 14.4 140 5-144 12-156 (202) 59 2dg7_A Putative transcriptiona 99.8 1.8E-18 7.9E-23 156.6 13.6 140 4-147 7-146 (195) 60 2oer_A Probable transcriptiona 99.8 1.6E-17 7E-22 149.5 18.1 132 3-135 23-156 (214) 61 3ccy_A Putative TETR-family tr 99.8 1.3E-17 6E-22 150.0 17.5 138 4-141 14-153 (203) 62 2q24_A Putative TETR family tr 99.8 3.2E-18 1.4E-22 154.7 14.2 137 4-144 15-151 (194) 63 3cwr_A Transcriptional regulat 99.8 3.9E-18 1.7E-22 154.0 14.6 139 4-144 17-158 (208) 64 3cjd_A Transcriptional regulat 99.8 3.7E-17 1.7E-21 146.7 19.1 133 4-136 12-148 (198) 65 3g7r_A Putative transcriptiona 99.8 1.6E-17 7.1E-22 149.5 17.1 130 4-137 35-169 (221) 66 3b81_A Transcriptional regulat 99.8 1.7E-17 7.6E-22 149.2 16.6 141 4-146 11-152 (203) 67 1t33_A Putative transcriptiona 99.8 3.8E-16 1.7E-20 139.1 23.3 137 4-141 12-163 (224) 68 1zk8_A Transcriptional regulat 99.8 8.9E-17 4E-21 143.9 19.3 110 3-115 7-116 (183) 69 3kkd_A Transcriptional regulat 99.8 1E-16 4.5E-21 143.4 18.9 67 4-70 35-101 (237) 70 2fbq_A Probable transcriptiona 99.8 5.5E-17 2.4E-21 145.4 17.4 91 1-91 3-99 (235) 71 3frq_A Repressor protein MPHR( 99.8 3E-17 1.3E-21 147.4 16.0 150 3-161 7-158 (195) 72 2fq4_A Transcriptional regulat 99.8 3.5E-17 1.5E-21 146.9 15.8 137 4-144 12-150 (192) 73 3col_A Putative transcription 99.8 1.3E-17 5.6E-22 150.2 13.1 150 3-153 9-161 (196) 74 3bjb_A Probable transcriptiona 99.8 8.2E-18 3.7E-22 151.6 12.0 99 4-102 22-121 (207) 75 2dg8_A Putative TETR-family tr 99.8 8E-17 3.6E-21 144.2 17.1 81 4-84 9-89 (193) 76 3jsj_A Putative TETR-family tr 99.8 4.1E-16 1.8E-20 138.9 20.2 142 4-151 9-155 (190) 77 3iuv_A Uncharacterized TETR fa 99.8 7.7E-17 3.4E-21 144.3 16.1 83 5-87 11-93 (201) 78 3bni_A Putative TETR-family tr 99.8 2.4E-16 1.1E-20 140.6 18.6 130 3-135 42-174 (229) 79 3c2b_A Transcriptional regulat 99.7 5.6E-17 2.5E-21 145.4 15.3 144 4-147 15-164 (221) 80 2opt_A Actii protein; helical 99.7 9.9E-17 4.4E-21 143.5 15.8 99 1-102 3-101 (234) 81 2qko_A Possible transcriptiona 99.7 3.6E-17 1.6E-21 146.8 13.3 135 4-141 28-168 (215) 82 2of7_A Putative TETR-family tr 99.7 1.7E-17 7.7E-22 149.2 10.9 155 4-162 48-205 (260) 83 2zcx_A SCO7815, TETR-family tr 99.7 1.1E-15 4.7E-20 135.8 19.7 95 4-99 23-117 (231) 84 2iu5_A DHAS, hypothetical prot 99.7 1E-15 4.6E-20 135.9 19.3 149 2-163 11-162 (195) 85 2oi8_A Putative regulatory pro 99.7 8.4E-17 3.7E-21 144.0 13.5 79 3-81 15-93 (216) 86 2qco_A CMER; transcriptional r 99.7 4.1E-17 1.8E-21 146.4 11.5 115 3-117 12-132 (210) 87 2vpr_A Tetracycline resistance 99.7 6.4E-17 2.8E-21 144.9 12.1 99 1-100 1-99 (207) 88 3bqy_A Putative TETR family tr 99.7 1.5E-15 6.5E-20 134.7 18.8 100 4-104 2-101 (209) 89 2yve_A Transcriptional regulat 99.7 2E-15 9.1E-20 133.6 19.5 114 1-117 1-115 (185) 90 3fiw_A Putative TETR-family tr 99.7 8.3E-17 3.7E-21 144.1 12.3 98 1-99 22-119 (211) 91 2hxi_A Putative transcriptiona 99.7 2.4E-16 1.1E-20 140.6 14.3 122 4-139 29-150 (241) 92 2np3_A Putative TETR-family re 99.7 2.4E-16 1.1E-20 140.7 13.7 97 3-99 29-126 (212) 93 2hxo_A Putative TETR-family tr 99.7 4.8E-16 2.1E-20 138.4 14.1 97 4-101 16-112 (237) 94 1z0x_A Transcriptional regulat 99.7 1.2E-15 5.4E-20 135.4 15.9 94 5-102 6-100 (220) 95 1sgm_A Putative HTH-type trans 99.7 2.8E-16 1.3E-20 140.1 12.1 135 4-142 6-147 (191) 96 2v57_A TETR family transcripti 99.7 1.4E-15 6.2E-20 134.9 14.8 130 4-144 14-144 (190) 97 2g7l_A TETR-family transcripti 99.7 2.6E-16 1.2E-20 140.3 10.6 98 4-103 19-116 (243) 98 2vke_A Tetracycline repressor 99.7 2.6E-15 1.2E-19 132.9 15.4 96 4-100 3-98 (207) 99 3kkc_A TETR family transcripti 99.7 4.4E-15 1.9E-19 131.2 16.5 145 4-163 12-157 (177) 100 3egq_A TETR family transcripti 99.7 2.9E-15 1.3E-19 132.5 14.9 89 4-100 4-92 (170) 101 2fd5_A Transcriptional regulat 99.7 1.6E-15 6.9E-20 134.5 13.0 85 4-88 7-91 (180) 102 2guh_A Putative TETR-family tr 99.7 4.2E-15 1.9E-19 131.3 14.8 59 3-61 38-96 (214) 103 2g7g_A RHA04620, putative tran 99.6 1.8E-15 8.2E-20 134.0 10.8 101 4-109 11-111 (213) 104 3ljl_A Transcriptional regulat 99.6 7E-15 3.1E-19 129.6 8.6 64 4-67 14-77 (156) 105 1jko_C HIN recombinase, DNA-in 95.9 0.0047 2.1E-07 40.9 3.5 36 10-49 11-46 (52) 106 2ao9_A Phage protein; structur 95.8 0.051 2.2E-06 33.2 8.3 45 9-54 33-77 (155) 107 2hsg_A Glucose-resistance amyl 94.3 0.026 1.2E-06 35.4 3.3 35 24-58 2-36 (332) 108 1jhf_A LEXA repressor; LEXA SO 92.6 0.21 9.3E-06 28.6 5.7 44 5-49 7-51 (202) 109 1j5y_A Transcriptional regulat 92.6 0.2 8.8E-06 28.7 5.5 42 1-47 13-59 (187) 110 1uxc_A FRUR (1-57), fructose r 92.2 0.069 3.1E-06 32.2 2.7 26 25-50 1-26 (65) 111 3h5t_A Transcriptional regulat 92.2 0.088 3.9E-06 31.4 3.2 29 23-51 8-36 (366) 112 1qpz_A PURA, protein (purine n 91.7 0.078 3.5E-06 31.8 2.6 25 25-49 1-25 (340) 113 2o20_A Catabolite control prot 91.5 0.027 1.2E-06 35.2 0.0 32 23-54 4-35 (332) 114 3kjx_A Transcriptional regulat 91.3 0.088 3.9E-06 31.4 2.5 28 23-50 9-36 (344) 115 1jye_A Lactose operon represso 91.2 0.03 1.3E-06 34.9 0.0 32 23-54 2-33 (349) 116 2k27_A Paired box protein PAX- 91.2 0.25 1.1E-05 28.0 4.7 40 1-48 26-65 (159) 117 2a6c_A Helix-turn-helix motif; 90.8 0.39 1.7E-05 26.6 5.4 45 2-49 12-56 (83) 118 3bil_A Probable LACI-family tr 90.6 0.037 1.6E-06 34.2 0.0 28 24-51 8-35 (348) 119 3jvd_A Transcriptional regulat 90.6 0.037 1.6E-06 34.2 0.0 32 23-54 5-36 (333) 120 2p4w_A Transcriptional regulat 90.4 0.3 1.3E-05 27.4 4.6 39 3-48 14-52 (202) 121 3dbi_A Sugar-binding transcrip 90.4 0.039 1.7E-06 34.0 0.0 29 23-51 2-30 (338) 122 3b7h_A Prophage LP1 protein 11 89.9 0.37 1.7E-05 26.7 4.6 44 3-49 1-45 (78) 123 3h5o_A Transcriptional regulat 89.8 0.047 2.1E-06 33.4 0.0 31 24-54 4-34 (339) 124 1u78_A TC3 transposase, transp 89.5 0.43 1.9E-05 26.2 4.7 37 4-48 10-46 (141) 125 1k78_A Paired box protein PAX5 89.2 0.53 2.4E-05 25.5 5.0 37 1-45 33-69 (149) 126 1on2_A Transcriptional regulat 89.1 0.67 3E-05 24.8 5.5 43 1-45 1-43 (142) 127 1pdn_C Protein (PRD paired); p 88.5 0.72 3.2E-05 24.5 5.3 37 1-45 18-54 (128) 128 3e3m_A Transcriptional regulat 88.5 0.067 3E-06 32.3 0.0 33 19-51 7-39 (355) 129 1y0u_A Arsenical resistance op 88.1 0.55 2.5E-05 25.4 4.5 37 4-48 31-67 (96) 130 1uly_A Hypothetical protein PH 87.8 0.43 1.9E-05 26.2 3.8 38 4-48 20-57 (192) 131 1ku9_A Hypothetical protein MJ 87.4 0.97 4.3E-05 23.6 5.4 44 4-47 6-64 (152) 132 1mkm_A ICLR transcriptional re 87.0 0.61 2.7E-05 25.1 4.2 45 3-49 4-48 (249) 133 2kpj_A SOS-response transcript 86.5 1 4.5E-05 23.4 5.1 42 7-50 7-48 (94) 134 1bl0_A Protein (multiple antib 86.4 0.58 2.6E-05 25.2 3.8 43 6-48 9-51 (129) 135 2k9s_A Arabinose operon regula 86.4 1.6 6.9E-05 22.0 6.7 44 8-51 3-47 (107) 136 3mkl_A HTH-type transcriptiona 86.0 0.87 3.9E-05 23.9 4.6 70 9-81 8-78 (120) 137 2di3_A Bacterial regulatory pr 85.5 1.5 6.7E-05 22.1 5.6 43 1-43 1-47 (239) 138 3jth_A Transcription activator 85.2 1.2 5.3E-05 22.9 4.9 37 4-47 23-59 (98) 139 2oqg_A Possible transcriptiona 85.1 1.1 5E-05 23.1 4.8 38 3-47 20-57 (114) 140 2jsc_A Transcriptional regulat 84.9 0.52 2.3E-05 25.6 3.0 36 4-46 21-56 (118) 141 2fjr_A Repressor protein CI; g 84.7 0.86 3.8E-05 24.0 4.0 42 1-48 3-44 (189) 142 1u8b_A ADA polyprotein; protei 84.7 1.5 6.6E-05 22.2 5.2 29 21-49 90-118 (133) 143 2b5a_A C.BCLI; helix-turn-heli 84.6 1.7 7.8E-05 21.7 5.5 46 3-51 5-50 (77) 144 3ctp_A Periplasmic binding pro 84.4 0.15 6.5E-06 29.7 0.0 27 25-51 3-29 (330) 145 2rn7_A IS629 ORFA; helix, all 84.2 1.2 5.3E-05 22.9 4.6 41 5-45 11-51 (108) 146 1xsv_A Hypothetical UPF0122 pr 83.7 2 9E-05 21.2 9.0 39 14-52 31-69 (113) 147 3mn2_A Probable ARAC family tr 83.6 1.4 6.1E-05 22.4 4.7 41 10-50 4-44 (108) 148 1r1u_A CZRA, repressor protein 83.6 1.6 7.1E-05 22.0 5.0 37 3-46 25-61 (106) 149 3f6o_A Probable transcriptiona 82.9 0.63 2.8E-05 25.0 2.7 36 4-46 18-53 (118) 150 1ub9_A Hypothetical protein PH 82.1 1.5 6.6E-05 22.2 4.4 37 5-47 17-53 (100) 151 3gbg_A TCP pilus virulence reg 82.1 1.9 8.3E-05 21.4 4.9 38 9-46 170-207 (276) 152 3hug_A RNA polymerase sigma fa 82.1 1.9 8.5E-05 21.3 4.9 31 15-45 44-74 (92) 153 2ia2_A Putative transcriptiona 81.7 0.51 2.3E-05 25.7 1.9 37 14-51 27-63 (265) 154 3bdn_A Lambda repressor; repre 81.6 1.7 7.6E-05 21.7 4.5 42 9-50 14-56 (236) 155 3cuo_A Uncharacterized HTH-typ 81.6 1.2 5.4E-05 22.8 3.8 37 4-46 24-60 (99) 156 2zkz_A Transcriptional repress 81.2 1.5 6.8E-05 22.1 4.2 37 4-46 27-63 (99) 157 2jn6_A Protein CGL2762, transp 81.2 0.95 4.2E-05 23.6 3.1 24 23-46 22-45 (97) 158 1r1t_A Transcriptional repress 81.0 1.6 7E-05 22.0 4.2 21 25-45 60-80 (122) 159 3lsg_A Two-component response 80.8 1.6 7E-05 22.0 4.1 28 24-51 19-46 (103) 160 2elh_A CG11849-PA, LD40883P; s 80.8 1.8 7.9E-05 21.6 4.4 31 24-54 38-68 (87) 161 1u2w_A CADC repressor, cadmium 80.8 1.7 7.7E-05 21.7 4.3 15 126-140 73-87 (122) 162 1d5y_A ROB transcription facto 80.2 1 4.4E-05 23.5 2.9 43 7-49 2-44 (292) 163 2ezk_A Transposase; DNA-bindin 80.1 1.8 8E-05 21.5 4.2 40 6-46 35-75 (99) 164 1fse_A GERE; helix-turn-helix 80.1 0.89 4E-05 23.8 2.7 27 22-48 24-50 (74) 165 3f6v_A Possible transcriptiona 79.5 0.71 3.2E-05 24.6 2.0 21 25-45 72-92 (151) 166 3cta_A Riboflavin kinase; stru 78.8 1.6 7.1E-05 22.0 3.6 47 1-48 1-51 (230) 167 3f52_A CLP gene regulator (CLG 78.4 2.5 0.00011 20.4 4.6 44 7-53 27-70 (117) 168 1s7o_A Hypothetical UPF0122 pr 78.2 1.4 6.4E-05 22.3 3.2 32 15-46 29-60 (113) 169 2v79_A DNA replication protein 77.6 2.2 0.0001 20.8 4.1 40 6-45 33-72 (135) 170 2q0o_A Probable transcriptiona 77.5 1.2 5.3E-05 22.9 2.7 16 9-24 23-38 (236) 171 2d1h_A ST1889, 109AA long hypo 77.3 1.7 7.4E-05 21.8 3.4 28 18-47 32-59 (109) 172 2w25_A Probable transcriptiona 77.0 2.6 0.00012 20.4 4.3 39 6-50 9-47 (150) 173 3c57_A Two component transcrip 77.0 1.2 5.6E-05 22.7 2.7 25 23-47 41-65 (95) 174 2cfx_A HTH-type transcriptiona 76.9 2.7 0.00012 20.3 4.3 32 15-48 12-43 (144) 175 1y7y_A C.AHDI; helix-turn-heli 76.4 1.4 6.4E-05 22.3 2.8 31 22-52 24-54 (74) 176 1r69_A Repressor protein CI; g 76.4 1.5 6.6E-05 22.2 2.9 27 23-49 13-39 (69) 177 2v4j_C Sulfite reductase, diss 76.2 3.4 0.00015 19.5 5.2 44 6-50 46-89 (105) 178 2cyy_A Putative HTH-type trans 76.0 2.9 0.00013 20.0 4.3 32 15-48 14-45 (151) 179 2vn2_A DNAD, chromosome replic 76.0 3.3 0.00015 19.5 4.6 40 7-46 34-73 (128) 180 3iwf_A Transcription regulator 75.8 1.5 6.6E-05 22.2 2.8 25 22-46 33-57 (107) 181 3hef_A Gene 1 protein; bacteri 75.7 3.5 0.00016 19.4 8.8 47 7-57 18-65 (143) 182 2o8x_A Probable RNA polymerase 75.6 2.3 0.0001 20.7 3.7 39 13-51 20-59 (70) 183 2wiu_B HTH-type transcriptiona 75.4 1.4 6.3E-05 22.3 2.6 36 20-55 21-56 (88) 184 2ia0_A Putative HTH-type trans 75.1 3 0.00014 19.8 4.2 32 15-48 24-55 (171) 185 2jpc_A SSRB; DNA binding prote 74.9 1.2 5.6E-05 22.7 2.2 25 23-47 12-36 (61) 186 1x3u_A Transcriptional regulat 74.8 1.5 6.6E-05 22.2 2.6 26 22-47 29-54 (79) 187 1adr_A P22 C2 repressor; trans 74.5 1.7 7.6E-05 21.7 2.8 34 15-51 12-45 (76) 188 2o0y_A Transcriptional regulat 74.5 1 4.5E-05 23.4 1.7 39 10-49 22-63 (260) 189 2krf_A Transcriptional regulat 74.4 1.6 7.2E-05 21.9 2.7 25 23-47 26-50 (73) 190 1zug_A Phage 434 CRO protein; 74.2 1.8 7.9E-05 21.6 2.9 27 23-49 15-41 (71) 191 1sfx_A Conserved hypothetical 74.0 3.4 0.00015 19.5 4.2 29 16-46 28-56 (109) 192 3kz3_A Repressor protein CI; f 73.7 1.8 8E-05 21.6 2.8 30 23-52 24-53 (80) 193 1p4w_A RCSB; solution structur 73.5 1.7 7.5E-05 21.8 2.6 25 23-47 48-72 (99) 194 1lmb_3 Protein (lambda repress 73.3 1.6 7E-05 22.0 2.4 31 22-52 28-58 (92) 195 1utx_A CYLR2; DNA-binding prot 73.0 2 9.1E-05 21.1 2.9 36 23-58 13-48 (66) 196 2g7u_A Transcriptional regulat 72.7 1.3 5.8E-05 22.6 1.8 35 14-49 20-54 (257) 197 2e1c_A Putative HTH-type trans 72.5 4 0.00018 19.0 4.3 31 15-47 34-64 (171) 198 1b0n_A Protein (SINR protein); 72.5 2.1 9.2E-05 21.1 2.8 27 22-48 12-38 (111) 199 2bnm_A Epoxidase; oxidoreducta 71.9 2.7 0.00012 20.2 3.3 43 5-47 4-46 (198) 200 3eco_A MEPR; mutlidrug efflux 71.9 3.6 0.00016 19.3 4.0 18 123-140 61-78 (139) 201 1je8_A Nitrate/nitrite respons 71.8 2 9.1E-05 21.1 2.7 25 23-47 35-59 (82) 202 1z4h_A TORI, TOR inhibition pr 71.7 2.1 9.3E-05 21.1 2.7 24 24-47 10-33 (66) 203 3i4p_A Transcriptional regulat 71.7 2.5 0.00011 20.4 3.1 32 15-48 10-41 (162) 204 3gp4_A Transcriptional regulat 71.1 2.5 0.00011 20.5 3.0 27 24-52 2-28 (142) 205 2p5v_A Transcriptional regulat 70.4 2.9 0.00013 20.0 3.2 28 23-50 23-50 (162) 206 2rnj_A Response regulator prot 70.4 1.6 7.2E-05 21.9 1.9 26 22-47 42-67 (91) 207 3b73_A PHIH1 repressor-like pr 70.2 3.6 0.00016 19.3 3.7 38 4-47 13-52 (111) 208 2pg4_A Uncharacterized protein 69.8 4.7 0.00021 18.4 5.2 43 8-54 16-58 (95) 209 2kko_A Possible transcriptiona 69.5 3.6 0.00016 19.3 3.6 35 5-46 26-60 (108) 210 3g3z_A NMB1585, transcriptiona 69.5 4.6 0.00021 18.5 4.1 20 24-43 45-64 (145) 211 3bs3_A Putative DNA-binding pr 69.0 1.8 8E-05 21.5 1.9 37 13-52 15-51 (76) 212 2cg4_A Regulatory protein ASNC 68.9 4.9 0.00022 18.3 4.3 30 15-46 15-44 (152) 213 2o3f_A Putative HTH-type trans 68.7 2.6 0.00012 20.4 2.7 36 21-56 36-76 (111) 214 2ofy_A Putative XRE-family tra 68.6 5 0.00022 18.2 4.1 25 24-48 27-51 (86) 215 3clc_A Regulatory protein; pro 68.1 2.3 0.0001 20.7 2.3 31 21-51 21-51 (82) 216 2pn6_A ST1022, 150AA long hypo 68.0 3.5 0.00015 19.4 3.2 32 15-48 10-41 (150) 217 2zhg_A Redox-sensitive transcr 67.3 3.2 0.00014 19.7 2.9 28 24-53 11-38 (154) 218 2nyx_A Probable transcriptiona 67.3 5 0.00022 18.3 3.9 18 123-140 73-90 (168) 219 3g5g_A Regulatory protein; tra 67.0 3.2 0.00014 19.7 2.8 29 23-51 40-68 (99) 220 1r8d_A Transcription activator 66.9 3.2 0.00014 19.7 2.8 21 25-45 3-23 (109) 221 3cec_A Putative antidote prote 66.7 2.7 0.00012 20.2 2.5 36 23-58 30-65 (104) 222 2hr3_A Probable transcriptiona 66.6 5.4 0.00024 17.9 4.0 18 124-141 65-82 (147) 223 2h09_A Transcriptional regulat 65.7 5.6 0.00025 17.8 5.5 35 7-43 39-73 (155) 224 3kxa_A NGO0477 protein, putati 65.7 2.4 0.00011 20.6 2.0 26 23-48 80-105 (141) 225 2fbi_A Probable transcriptiona 65.7 5 0.00022 18.2 3.6 16 124-139 65-80 (142) 226 3mlf_A Transcriptional regulat 65.7 3.1 0.00014 19.7 2.6 37 23-59 35-71 (111) 227 3gpv_A Transcriptional regulat 65.5 3.3 0.00015 19.6 2.7 20 25-44 17-36 (148) 228 3bj6_A Transcriptional regulat 65.3 5.8 0.00026 17.8 3.9 18 123-140 68-85 (152) 229 3bdd_A Regulatory protein MARR 65.1 5.8 0.00026 17.7 4.2 25 194-218 115-139 (142) 230 1q06_A Transcriptional regulat 64.0 3.8 0.00017 19.1 2.8 26 25-52 1-26 (135) 231 1i1g_A Transcriptional regulat 63.6 4.7 0.00021 18.4 3.2 31 15-47 11-41 (141) 232 3ivp_A Putative transposon-rel 62.9 3.7 0.00017 19.2 2.6 31 20-50 21-51 (126) 233 2vz4_A Tipal, HTH-type transcr 62.8 4.5 0.0002 18.6 2.9 27 24-52 1-27 (108) 234 1akh_A Protein (mating-type pr 62.6 5.6 0.00025 17.9 3.4 38 9-49 19-57 (61) 235 3hrs_A Metalloregulator SCAR; 62.6 5.2 0.00023 18.1 3.2 40 5-46 3-42 (214) 236 3clo_A Transcriptional regulat 62.5 4.6 0.00021 18.5 3.0 14 196-209 197-210 (258) 237 2w57_A Ferric uptake regulatio 62.5 6.1 0.00027 17.6 3.6 31 15-45 24-59 (150) 238 2ict_A Antitoxin HIGA; helix-t 62.5 2.5 0.00011 20.5 1.6 35 23-57 20-54 (94) 239 2eby_A Putative HTH-type trans 62.1 3.8 0.00017 19.1 2.5 39 21-59 21-59 (113) 240 1r71_A Transcriptional repress 62.0 6.6 0.00029 17.3 4.7 30 14-46 45-74 (178) 241 1neq_A DNA-binding protein NER 61.4 4.8 0.00021 18.4 2.9 27 22-48 20-46 (74) 242 2p5t_A Putative transcriptiona 61.3 3.8 0.00017 19.1 2.4 36 23-58 13-48 (158) 243 2r1j_L Repressor protein C2; p 61.0 1.9 8.4E-05 21.4 0.8 30 23-52 17-46 (68) 244 3jw4_A Transcriptional regulat 60.8 3.7 0.00017 19.2 2.2 76 123-214 71-146 (148) 245 3hh0_A Transcriptional regulat 60.8 4.8 0.00021 18.4 2.8 27 24-52 4-30 (146) 246 1ji8_A Dissimilatory siroheme- 60.4 2.4 0.00011 20.6 1.2 39 8-47 54-92 (111) 247 1x57_A Endothelial differentia 60.1 3.7 0.00017 19.2 2.2 32 20-51 22-53 (91) 248 3boq_A Transcriptional regulat 59.7 4.6 0.00021 18.5 2.6 28 195-222 132-159 (160) 249 2jml_A DNA binding domain/tran 59.5 4 0.00018 19.0 2.2 22 23-44 4-25 (81) 250 2ogf_A Hypothetical protein MJ 59.2 3.3 0.00015 19.6 1.7 29 19-47 11-40 (122) 251 3bro_A Transcriptional regulat 59.0 7.3 0.00033 17.0 4.2 17 124-140 65-81 (141) 252 2qww_A Transcriptional regulat 58.9 7.4 0.00033 17.0 3.9 18 123-140 69-86 (154) 253 2dbb_A Putative HTH-type trans 58.8 6.1 0.00027 17.6 3.1 25 23-47 22-46 (151) 254 2ecc_A Homeobox and leucine zi 58.0 7.1 0.00032 17.1 3.3 41 9-52 17-58 (76) 255 3ech_A MEXR, multidrug resista 57.8 6.9 0.00031 17.2 3.2 23 122-144 64-86 (142) 256 3fmy_A HTH-type transcriptiona 57.7 5.3 0.00023 18.0 2.6 28 22-49 22-49 (73) 257 2ef8_A C.ECOT38IS, putative tr 57.2 6.7 0.0003 17.3 3.1 29 23-51 22-50 (84) 258 3e7l_A Transcriptional regulat 57.1 6 0.00027 17.6 2.8 23 24-46 32-54 (63) 259 3f6w_A XRE-family like protein 55.6 5.5 0.00024 17.9 2.4 32 20-51 23-54 (83) 260 1s3j_A YUSO protein; structura 55.3 8.3 0.00037 16.6 3.8 18 123-140 65-82 (155) 261 1ku3_A Sigma factor SIGA; heli 55.3 6.2 0.00027 17.5 2.6 27 17-43 23-49 (73) 262 2qlz_A Transcription factor PF 55.3 1.2 5.2E-05 22.9 -1.1 39 3-48 11-49 (232) 263 1y9q_A Transcriptional regulat 55.2 4.4 0.0002 18.6 1.8 40 9-51 12-51 (192) 264 1umq_A Photosynthetic apparatu 54.9 6.2 0.00028 17.5 2.6 20 26-45 56-75 (81) 265 2dn0_A Zinc fingers and homeob 54.6 8.5 0.00038 16.5 3.6 45 5-50 16-61 (76) 266 2frh_A SARA, staphylococcal ac 54.5 8.6 0.00038 16.5 3.2 23 196-218 98-120 (127) 267 2dg6_A Putative transcriptiona 54.3 7.1 0.00032 17.1 2.8 20 26-45 2-21 (222) 268 1wh5_A ZF-HD homeobox family p 54.2 8.7 0.00039 16.4 3.3 36 14-49 33-73 (80) 269 2da3_A Alpha-fetoprotein enhan 53.7 8.8 0.00039 16.4 3.4 37 14-50 33-70 (80) 270 3eus_A DNA-binding protein; st 53.7 4.7 0.00021 18.4 1.8 40 10-51 15-54 (86) 271 1rp3_A RNA polymerase sigma fa 53.4 8.9 0.0004 16.3 3.3 10 196-205 187-196 (239) 272 2gmg_A Hypothetical protein PF 53.4 4.9 0.00022 18.3 1.8 34 4-44 11-48 (105) 273 3frw_A Putative Trp repressor 53.1 7.8 0.00035 16.8 2.8 10 201-210 89-98 (107) 274 2ppx_A AGR_C_3184P, uncharacte 52.7 8.4 0.00038 16.5 3.0 20 25-44 44-63 (99) 275 2da4_A Hypothetical protein DK 52.6 8.5 0.00038 16.5 3.0 43 10-52 20-67 (80) 276 2da5_A Zinc fingers and homeob 52.3 9.3 0.00041 16.2 3.4 35 15-49 24-59 (75) 277 1lj9_A Transcriptional regulat 52.2 9.3 0.00041 16.2 3.7 17 124-140 58-74 (144) 278 2rdp_A Putative transcriptiona 51.8 9.4 0.00042 16.2 4.4 18 123-140 70-87 (150) 279 2vi6_A Homeobox protein nanog; 51.5 9.5 0.00042 16.1 3.4 40 10-49 15-55 (62) 280 1z91_A Organic hydroperoxide r 51.0 9.6 0.00043 16.1 3.0 19 123-141 68-86 (147) 281 3e6c_C CPRK, cyclic nucleotide 51.0 9.7 0.00043 16.1 5.2 101 34-141 105-209 (250) 282 1ylf_A RRF2 family protein; st 50.6 9.8 0.00044 16.0 5.5 46 1-46 7-52 (149) 283 3d1n_I POU domain, class 6, tr 50.6 9.8 0.00044 16.0 4.3 16 24-39 21-36 (151) 284 3bpv_A Transcriptional regulat 50.6 9.8 0.00044 16.0 4.5 17 124-140 58-74 (138) 285 2p7v_B Sigma-70, RNA polymeras 50.5 8.5 0.00038 16.5 2.7 24 20-43 21-44 (68) 286 3mky_B Protein SOPB; partition 50.4 9.1 0.00041 16.3 2.8 26 20-46 39-64 (189) 287 1ocp_A OCT-3; DNA-binding prot 50.2 9.7 0.00043 16.1 2.9 39 11-49 21-60 (67) 288 2jvl_A TRMBF1; coactivator, he 50.1 9.1 0.0004 16.3 2.8 49 10-58 35-83 (107) 289 2iec_A Uncharacterized protein 49.9 5.4 0.00024 18.0 1.6 29 19-47 3-32 (131) 290 1xd7_A YWNA; structural genomi 49.8 10 0.00045 15.9 4.9 41 1-43 1-42 (145) 291 3bd1_A CRO protein; transcript 49.3 10 0.00046 15.9 3.4 31 9-46 3-33 (79) 292 1rzs_A Antirepressor, regulato 49.3 8.9 0.0004 16.3 2.6 19 26-44 12-30 (61) 293 3cdh_A Transcriptional regulat 49.3 10 0.00046 15.9 3.2 18 123-140 71-88 (155) 294 2a61_A Transcriptional regulat 49.2 10 0.00046 15.9 3.9 19 123-141 61-79 (145) 295 1x2m_A LAG1 longevity assuranc 49.1 8.7 0.00039 16.4 2.6 36 15-50 17-54 (64) 296 2ecb_A Zinc fingers and homeob 49.0 8.2 0.00037 16.6 2.4 38 13-50 26-64 (89) 297 1bw5_A ISL-1HD, insulin gene e 49.0 10 0.00046 15.9 4.0 41 10-50 15-56 (66) 298 2k9l_A RNA polymerase sigma fa 48.9 10 0.00046 15.8 3.6 18 129-146 37-54 (76) 299 2hdd_A Protein (engrailed home 47.8 11 0.00048 15.7 3.7 42 9-50 14-56 (61) 300 2o03_A Probable zinc uptake re 47.7 11 0.00048 15.7 4.7 38 5-45 10-52 (131) 301 3bja_A Transcriptional regulat 47.3 9.7 0.00043 16.1 2.6 24 193-216 115-138 (139) 302 3g7d_A PHPD; non heme Fe(II) d 47.1 11 0.00049 15.6 4.8 45 23-67 242-287 (443) 303 2da2_A Alpha-fetoprotein enhan 47.0 8.8 0.00039 16.4 2.3 40 11-50 20-60 (70) 304 2eth_A Transcriptional regulat 46.9 11 0.00049 15.6 3.8 18 123-140 72-89 (154) 305 1tlq_A Hypothetical protein YP 46.8 11 0.00049 15.6 3.7 31 1-34 1-33 (189) 306 2d5v_A Hepatocyte nuclear fact 46.8 8.8 0.00039 16.4 2.3 20 24-43 21-41 (164) 307 2qq9_A Diphtheria toxin repres 46.7 11 0.0005 15.6 5.5 40 5-46 7-46 (226) 308 2e19_A Transcription factor 8; 46.7 11 0.0005 15.6 2.9 41 10-50 15-56 (64) 309 2fa5_A Transcriptional regulat 46.4 11 0.0005 15.6 4.6 23 122-144 76-98 (162) 310 1r8e_A Multidrug-efflux transp 45.9 11 0.00048 15.7 2.6 26 25-52 6-31 (278) 311 3deu_A Transcriptional regulat 45.5 12 0.00052 15.5 3.6 80 123-218 82-161 (166) 312 2dmu_A Homeobox protein goosec 45.5 12 0.00052 15.5 3.8 42 9-50 18-60 (70) 313 1qgp_A Protein (double strande 45.4 12 0.00052 15.5 5.3 36 9-44 15-51 (77) 314 1c9b_A General transcription f 45.4 12 0.00052 15.5 5.1 40 5-45 46-86 (207) 315 3hsr_A HTH-type transcriptiona 45.3 11 0.00047 15.8 2.5 19 123-141 64-82 (140) 316 2e1o_A Homeobox protein PRH; D 44.2 12 0.00054 15.3 3.3 41 10-50 19-60 (70) 317 1zx4_A P1 PARB, plasmid partit 44.1 12 0.00054 15.3 4.5 28 16-46 19-46 (192) 318 2da7_A Zinc finger homeobox pr 42.9 12 0.00054 15.3 2.5 41 10-50 17-58 (71) 319 2gxg_A 146AA long hypothetical 42.6 13 0.00057 15.2 3.5 17 124-140 65-81 (146) 320 2nnn_A Probable transcriptiona 42.5 13 0.00057 15.2 4.3 18 123-140 66-83 (140) 321 2i52_A Hypothetical protein; s 42.3 7.4 0.00033 16.9 1.3 28 19-47 7-35 (121) 322 2h1k_A IPF-1, pancreatic and d 41.7 13 0.00059 15.1 3.8 41 10-50 15-56 (63) 323 1tty_A Sigma-A, RNA polymerase 41.7 13 0.00059 15.1 2.6 26 17-42 31-56 (87) 324 2pex_A Transcriptional regulat 41.7 13 0.00059 15.1 3.9 21 122-142 74-94 (153) 325 1fx7_A Iron-dependent represso 41.0 13 0.0006 15.0 5.5 39 5-45 7-45 (230) 326 2fbk_A Transcriptional regulat 41.0 12 0.00053 15.4 2.2 23 196-218 157-179 (181) 327 1uhs_A HOP, homeodomain only p 40.3 14 0.00061 14.9 3.7 41 11-51 14-56 (72) 328 1zyb_A Transcription regulator 39.8 14 0.00062 14.9 2.8 10 104-113 130-139 (232) 329 2cqx_A LAG1 longevity assuranc 39.6 14 0.00063 14.9 2.4 36 15-50 25-62 (72) 330 2dmq_A LIM/homeobox protein LH 39.4 14 0.00063 14.8 3.9 41 10-50 19-60 (80) 331 2o0m_A Transcriptional regulat 38.4 5.1 0.00023 18.2 0.0 46 2-53 18-65 (345) 332 2cue_A Paired box protein PAX6 38.2 14 0.00061 14.9 2.2 44 10-53 19-63 (80) 333 2bv6_A MGRA, HTH-type transcri 37.8 15 0.00067 14.6 2.8 17 124-140 66-82 (142) 334 3cmy_A HUP2, paired box protei 37.6 15 0.00067 14.6 4.3 41 10-50 14-55 (61) 335 2k40_A Homeobox expressed in E 37.6 15 0.00067 14.6 3.2 41 10-50 13-54 (67) 336 1g2h_A Transcriptional regulat 37.4 15 0.00067 14.6 2.3 19 25-43 34-52 (61) 337 3k0l_A Repressor protein; heli 37.0 15 0.00068 14.6 4.2 29 194-222 129-157 (162) 338 1x2n_A Homeobox protein pknox1 37.0 15 0.00068 14.6 3.3 41 9-49 21-62 (73) 339 1b72_A Protein (homeobox prote 36.8 16 0.00069 14.5 3.8 39 12-50 48-87 (97) 340 2hi3_A Homeodomain-only protei 36.7 16 0.00069 14.5 4.1 45 5-50 10-56 (73) 341 3cjn_A Transcriptional regulat 36.3 16 0.0007 14.5 4.0 18 123-140 80-97 (162) 342 2kfs_A Conserved hypothetical 35.5 16 0.00072 14.4 2.4 26 24-49 31-56 (148) 343 1wi3_A DNA-binding protein SAT 35.3 16 0.00073 14.4 3.8 37 14-50 23-61 (71) 344 2da1_A Alpha-fetoprotein enhan 34.7 17 0.00074 14.3 4.7 41 10-50 19-60 (70) 345 1qbj_A Protein (double-strande 34.4 17 0.00075 14.3 5.3 35 10-44 12-47 (81) 346 2djn_A Homeobox protein DLX-5; 34.4 17 0.00075 14.3 2.3 41 9-49 18-59 (70) 347 1du6_A PBX1, homeobox protein 33.9 17 0.00076 14.2 2.5 29 20-48 28-57 (64) 348 2w48_A Sorbitol operon regulat 33.7 17 0.00077 14.2 4.5 37 7-46 7-43 (315) 349 3dbw_A Transcriptional regulat 32.7 18 0.00079 14.1 5.3 38 5-42 21-61 (226) 350 1mnm_C Protein (MAT alpha-2 tr 32.6 18 0.0008 14.1 3.7 35 15-49 44-82 (87) 351 1zq3_P PRD-4, homeotic bicoid 32.5 18 0.0008 14.1 2.5 42 10-51 14-56 (68) 352 2hs5_A Putative transcriptiona 32.5 18 0.0008 14.1 5.0 40 5-44 29-71 (239) 353 2fxa_A Protease production reg 32.3 18 0.0008 14.0 2.3 22 23-44 61-82 (207) 354 1le8_B Mating-type protein alp 32.2 18 0.00081 14.0 3.8 37 13-49 17-57 (83) 355 2dms_A Homeobox protein OTX2; 31.7 18 0.00082 14.0 3.9 43 9-51 18-61 (80) 356 3e6m_A MARR family transcripti 31.5 19 0.00083 13.9 3.3 23 195-217 137-159 (161) 357 1jgs_A Multiple antibiotic res 31.0 19 0.00084 13.9 4.1 17 124-140 63-79 (138) 358 3c7j_A Transcriptional regulat 30.9 19 0.00085 13.9 5.1 38 5-42 27-67 (237) 359 1jgg_A Segmentation protein EV 30.5 19 0.00086 13.8 4.1 41 10-50 13-54 (60) 360 1e3o_C Octamer-binding transcr 30.4 19 0.00086 13.8 2.5 12 195-206 124-135 (160) 361 3eyy_A Putative iron uptake re 30.1 20 0.00087 13.8 4.7 20 25-44 34-58 (145) 362 1p4x_A Staphylococcal accessor 30.1 20 0.00087 13.8 3.5 31 15-45 41-71 (250) 363 1tlh_B Sigma-70, RNA polymeras 29.9 9.3 0.00041 16.2 0.2 19 23-41 37-55 (81) 364 2fbh_A Transcriptional regulat 28.9 20 0.00091 13.6 2.8 18 123-140 66-83 (146) 365 3by6_A Predicted transcription 28.8 20 0.00091 13.6 4.0 38 7-44 14-55 (126) 366 2kt0_A Nanog, homeobox protein 28.8 21 0.00092 13.6 2.8 36 14-49 38-74 (84) 367 2pih_A Protein YMCA; regulate 28.7 17 0.00076 14.2 1.4 18 1-18 1-18 (151) 368 3lwf_A LIN1550 protein, putati 28.5 21 0.00093 13.6 5.3 42 3-44 22-64 (159) 369 1k61_A Mating-type protein alp 28.1 21 0.00094 13.5 3.7 42 8-49 11-53 (60) 370 1ufm_A COP9 complex subunit 4; 28.0 21 0.00094 13.5 4.1 33 6-39 13-45 (84) 371 2vt3_A REX, redox-sensing tran 27.6 21 0.00095 13.5 4.1 45 9-53 18-67 (215) 372 3fm5_A Transcriptional regulat 27.4 22 0.00096 13.5 2.5 78 123-216 68-145 (150) 373 1y9i_A Low temperature require 27.0 22 0.00097 13.4 1.7 30 1-33 1-31 (178) 374 2cra_A Homeobox protein HOX-B1 26.8 22 0.00098 13.4 3.7 39 11-49 20-59 (70) 375 2cuf_A FLJ21616 protein; homeo 26.6 22 0.00099 13.3 3.3 39 11-49 20-74 (95) 376 1yio_A Response regulatory pro 26.5 22 0.001 13.3 3.0 18 10-27 17-34 (208) 377 3k69_A Putative transcription 26.4 22 0.001 13.3 4.4 43 3-45 7-49 (162) 378 2ev1_A Hypothetical protein RV 26.4 23 0.001 13.3 2.9 19 25-43 79-97 (222) 379 1bia_A BIRA bifunctional prote 25.8 23 0.001 13.2 4.6 42 4-51 5-46 (321) 380 3lhi_A Putative 6-phosphogluco 25.0 24 0.0011 13.1 1.6 29 41-69 4-32 (232) 381 1v4r_A Transcriptional repress 24.9 24 0.0011 13.1 3.3 16 26-41 37-52 (102) 382 3d0s_A Transcriptional regulat 24.5 24 0.0011 13.1 4.6 25 102-126 113-137 (227) 383 2pjp_A Selenocysteine-specific 24.2 25 0.0011 13.0 2.0 33 6-41 5-37 (121) 384 3eet_A Putative GNTR-family tr 24.2 25 0.0011 13.0 5.3 39 7-45 32-74 (272) 385 2k9m_A RNA polymerase sigma fa 23.9 25 0.0011 13.0 1.6 32 7-38 22-53 (130) 386 1nk2_P Homeobox protein VND; h 23.8 25 0.0011 13.0 3.9 42 9-50 20-62 (77) 387 1z6r_A MLC protein; transcript 23.7 25 0.0011 13.0 4.9 40 6-47 14-53 (406) 388 1b8i_A Ultrabithorax, protein 23.7 25 0.0011 13.0 4.1 40 10-49 32-72 (81) 389 2ewt_A BLDD, putative DNA-bind 23.4 25 0.0011 12.9 5.9 29 23-51 20-50 (71) 390 1mzb_A Ferric uptake regulatio 23.1 26 0.0011 12.9 4.3 20 25-44 35-59 (136) 391 2w7n_A TRFB transcriptional re 22.6 26 0.0012 12.8 4.8 33 7-43 21-53 (101) 392 2dmt_A Homeobox protein BARH-l 22.2 27 0.0012 12.8 4.1 42 9-50 28-70 (80) 393 1tc3_C Protein (TC3 transposas 22.0 27 0.0012 12.7 2.9 24 24-47 21-44 (51) 394 2ovi_A Hypothetical protein CH 21.6 27 0.0012 12.7 2.6 26 23-48 14-39 (164) 395 3f3x_A Transcriptional regulat 21.6 27 0.0012 12.7 9.3 18 123-140 64-81 (144) 396 1au7_A Protein PIT-1, GHF-1; c 21.3 28 0.0012 12.6 2.5 11 195-205 110-120 (146) 397 3k7a_M Transcription initiatio 21.2 15 0.00069 14.6 0.0 14 26-39 188-201 (345) 398 1cf7_A Protein (transcription 21.2 28 0.0012 12.6 3.0 32 11-42 17-49 (76) 399 1yz8_P Pituitary homeobox 2; D 21.2 28 0.0012 12.6 3.7 41 10-50 15-56 (68) 400 1yx7_A Calsensin, LAN3-6 antig 21.0 28 0.0013 12.6 2.2 33 1-34 1-33 (83) 401 1o5l_A Transcriptional regulat 20.9 15 0.00067 14.6 -0.1 20 36-55 101-120 (213) 402 2ek5_A Predicted transcription 20.3 29 0.0013 12.5 4.5 41 5-45 5-49 (129) No 1 >1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 Probab=99.88 E-value=2.8e-20 Score=170.07 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=134.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||++|.++|.++||+++||++||+++|||+|+|||||+|||+|+.+++++..+.+...+....+...+.+.+..+ T Consensus 18 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 97 (212) T 1pb6_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEY 97 (212) T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHHCCTTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 89999999999999985915188999999979498889787789999999878999999999999750569878999999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998778865444-441268899999999999999999999999986598889938899999999999999988 Q T0611 84 LESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWM 162 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~ 162 (227) +..+......++...+.+. .+....|.+..............+..++..+++.|.+.+.++.. ++..++.....|. T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---l~~~~~~~~~~~~ 174 (212) T 1pb6_A 98 IRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQH---LIFMIWASTQHYA 174 (212) T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSCSCCHHH---HHHHHHHHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHH T ss_conf 9999999997849999999998616888899999999999999999999999859999999999---9999999999999 Q ss_pred HHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCCH Q ss_conf 7765531002200010899999999999987121898 Q T0611 163 AFLKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLTP 199 (227) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p~lt~ 199 (227) .+.................+.+.+..+..++..-++| T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~Gl~p 211 (212) T 1pb6_A 175 DFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRP 211 (212) T ss_dssp HTHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHTTTSC T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 9899999873898788799999999999999976688 No 2 >1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=99.88 E-value=6.2e-20 Score=167.51 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=125.9 Q ss_pred CCHH----HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCC Q ss_conf 9737----7999999999999872810365799999857787789998344899999999999999999875221-7998 Q T0611 1 MTMK----TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPI 75 (227) Q Consensus 1 ~~~~----TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~ 75 (227) |+++ ||++||+||.++|.++||.++||++||+++|||+|++|+||+||++|+.+++.+..+.+...+.... ...+ T Consensus 1 m~~~~~~~~~~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (206) T 1vi0_A 1 MSLKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKAT 80 (206) T ss_dssp -------CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCS T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 99764489999999999999998393407799999995988757986089879999999998877999988876412201 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-H-HHHHHHHH Q ss_conf 77899999999999999877886544-444126889999999999999999999999998659888993-8-89999999 Q T0611 76 TLEDMTFYLESVFDGLWSYRFFHRDL-EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP-E-DLRSAMSL 152 (227) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~-~-~~~~~l~~ 152 (227) +.+.+..++..++.....++.++..+ ......+|.+...+.+....+...+..++..+++.|.++++. . .....+.. T Consensus 81 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~~~~~~~a~~i~~ 160 (206) T 1vi0_A 81 AKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFG 160 (206) T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 26899999999999998680089999998731677888888889999989999999999985998863429999999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999988 Q T0611 153 NVWLVITNWM 162 (227) Q Consensus 153 ~~~~~~~~w~ 162 (227) .+..+...|+ T Consensus 161 ~~~~~~~~~~ 170 (206) T 1vi0_A 161 TIDETVTTWV 170 (206) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 3 >3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} Probab=99.87 E-value=2.1e-20 Score=170.99 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=118.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||++|.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+....+......++.+.+..+ T Consensus 8 ~tR~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (206) T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVMTAY 87 (206) T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHGGGGCCHHHHTTTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 99999999999999985925288999999959499999888489999998778999999888887510000479999999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 9999999998778865444-4412688999999999999999999999999865988899388 Q T0611 84 LESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) +..+++....++.++..+. +....++.+...+.+...+....+...++.+++.|.++++.+. T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~~~~ 150 (206) T 3dew_A 88 LRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHA 150 (206) T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHSCCHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH T ss_conf 999999998757999999998853787789999999999999999999999985999999999 No 4 >3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} Probab=99.87 E-value=1.9e-19 Score=163.95 Aligned_cols=188 Identities=11% Similarity=0.104 Sum_probs=125.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .+|++||+||.++|.++||+++||++||+++|||+|++||||+||++|+.+++++..+.+...+.... ...++.+.+.. T Consensus 11 ~~re~Il~aA~~lf~e~G~~~~s~~~IA~~agvs~~tlY~hF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (216) T 3f0c_A 11 GKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKK 90 (216) T ss_dssp CHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 89999999999999974904078999999879198789777599999999999999999999999998469999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHH Q ss_conf 9999999999877886544444-1268899999999999999999999999986598889938899-9999999999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYL-LDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLR-SAMSLNVWLVITN 160 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~-~~l~~~~~~~~~~ 160 (227) ++..........+......... ....+.+...+.....+....+..+++.+++.|.++++++... ..+...+..+... T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~a~~~~~~i~g~~~~ 170 (216) T 3f0c_A 91 YVKLRSLHFRHLLNLSKLRSDFFHNTKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKRGNKHENAEFLVHLLLGVRMV 170 (216) T ss_dssp HHHHHHHHHHHHHHHHCSSSCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999998376899999998518598999999999999999999999999869989999999999999999999999 Q ss_pred HHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHH Q ss_conf 88776553100220001089999999999998712 Q T0611 161 WMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVP 195 (227) Q Consensus 161 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p 195 (227) ++.+. ..............+.+.+++.++.. T Consensus 171 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (216) T 3f0c_A 171 KLKYK----EINDFDESDYEDLDKNMCKVAGMFLK 201 (216) T ss_dssp HHHHS----CSSSCCSHHHHHHHHHHHHHHHHHHH T ss_pred HHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99986----50588846899999999999999998 No 5 >3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* Probab=99.87 E-value=1.8e-19 Score=164.06 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=119.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCH-HHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217--99877-899 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED--RPITL-EDM 80 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~--~~~~~-~~~ 80 (227) .||++||+||.++|.++||.++|+++||+++|||+|+|||||+||++|+.++++.+.+++...+..... ...+. ..+ T Consensus 44 ~rR~~IL~AA~~lf~~~G~~~~Tv~~IA~~AGVsk~tlY~~F~sKe~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (256) T 3g1l_A 44 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMW 123 (256) T ss_dssp HHHHHHHHHHHHHTTTSCGGGCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 99999999999999983923162999999979099888367688899999999999999999999987276778899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999999998778865444441268899999999999999999999999986598889938 Q T0611 81 TFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ...+..+++....++.+++.+.+....+|.+...+......+...+..++..+++.|.++++.+ T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~~~~~~ 187 (256) T 3g1l_A 124 RTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLP 187 (256) T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSC T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999999986829999999985169999999999999999999999999998599999999 No 6 >1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A* Probab=99.86 E-value=4.9e-19 Score=160.78 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=120.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217---99877899 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED---RPITLEDM 80 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~---~~~~~~~~ 80 (227) .||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+..... ..+....+ T Consensus 24 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (216) T 1t56_A 24 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMW 103 (216) T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999970944077999999968586666035898789999999999999999999987356764289999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999999998778865444441268899999999999999999999999986598889938 Q T0611 81 TFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ...+..++.....++.++..+......+|.+...+.+..+.+...+..++..+++.|.++++.+ T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 167 (216) T 1t56_A 104 RTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLP 167 (216) T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSC T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999999986849999999871368899999999999999999999999998399999899 No 7 >1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=99.86 E-value=1.3e-19 Score=165.13 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=113.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||++|.++|.++||.++||++||+++|||+|+|||||+||++|+.++++.+.+.+...+........+...+..+ T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tlY~~F~~K~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (205) T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQSVWASISSY 91 (205) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999999981924088999999858996521016899999999999999999999999875269879999999 Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999998778----865444441268899999999999999999999999986598889938 Q T0611 84 LESVFDGLWSYRF----FHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..+......+.. +...+......++.+...+......+...+..++..+++.|.++++.+ T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 156 (205) T 1rkt_A 92 LDELTEGLRDVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQP 156 (205) T ss_dssp HHHHHHHTTTGGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999985644326899999986336579999999999999999999999998499999999 No 8 >3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX} Probab=99.86 E-value=3.3e-19 Score=162.05 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=118.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .||++||+||.++|.++||.++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... ....+.+.+.. T Consensus 31 ~~R~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~yF~sK~~L~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 110 (218) T 3dcf_A 31 DRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHA 110 (218) T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 89999999999999985935177999999979098688687599999999999999999999999987267771899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 99999999998778865444-44126889999999999999999999999998659888993889999 Q T0611 83 YLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSA 149 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~ 149 (227) ++..++....+++.....+. .....+|.....+......+.+.+..++..+++.|.+++.++..... T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~d~~~~a~ 178 (218) T 3dcf_A 111 LLVEHTRTILRNLDANTLFYNERGLLSPEREREMRKREREYTEIMQRLYAEGVATGELLDVDPTVATA 178 (218) T ss_dssp HHHHHHHHHHHSHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCCSCHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 99999999987847999999988635989999999999999999999999999869999999999999 No 9 >3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp} Probab=99.86 E-value=1e-18 Score=158.39 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=121.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .||++|+++|.++|.++||+++||++||+++|||+|++|+||+||++|+.+++++..+.+...+.... ...++.+.+.. T Consensus 12 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (202) T 3lwj_A 12 ERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEKDLYERFIE 91 (202) T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999871934076999999879088789888599999999999999998788899875124558999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993889 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDL 146 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~ 146 (227) .+..++.....++.++..+......++.+...+..........+..++..+++.|.+++.+.+. T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 155 (202) T 3lwj_A 92 TKRLTMEVFAQNETLSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFKNVPVSP 155 (202) T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 9999999876067999999998606876899999999999999999999999869999999999 No 10 >2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* Probab=99.86 E-value=6.6e-19 Score=159.81 Aligned_cols=142 Identities=17% Similarity=0.265 Sum_probs=112.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221--7998778999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE--DRPITLEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~--~~~~~~~~~~ 81 (227) .||++|+++|.++|.++||+++||++||+++|||+|++||||+||++|+.+++++..+.+...+.... ...++.+.+. T Consensus 16 ~~R~~Il~aA~~lf~~~G~~~~t~~~Ia~~agvs~~tiY~yF~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (213) T 2qtq_A 16 GARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKLR 95 (213) T ss_dssp THHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 89999999999999973944167999999979398899988664999999899999999999988864146788999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999999998778865444441-268-8999999999999999999999999865988899388 Q T0611 82 FYLESVFDGLWSYRFFHRDLEYLL-DSD-PRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) .++..++....+++.+.+.+.... ..+ +................+..++..+++.|.+++.++. T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~d~~ 161 (213) T 2qtq_A 96 RHISKCIDTYYDYPYLNRLLMRLVRDSDEAEAKRIADQYLLPLHRAYNRFIGEGVKAGVFRPINPQ 161 (213) T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSBCSCCHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 999999999998925999999998607828899999999877789999999999986999999999 No 11 >2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A* Probab=99.86 E-value=3.6e-19 Score=161.79 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=120.1 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCHH Q ss_conf 737799999999999987281036579999985778778999834489999999999999999987522---17998778 Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP---EDRPITLE 78 (227) Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~---~~~~~~~~ 78 (227) .+.||++|+++|.++|.++||+++||++||+++|||+|++|+||+||++|+.+++.+..+.+...+... ....++.+ T Consensus 3 ~~~rR~~Il~aA~~l~~~~G~~~~s~~~Ia~~agis~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (202) T 2id6_A 3 MLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFD 82 (202) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 27999999999999998739352879999998890999997784899999999999999987999999874265776999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 999999999999998778865444441268899999999999999999999999986598889938 Q T0611 79 DMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) .+...+..+++....++.....+......+|.+...+.....+....+...+.++++.|.++++.+ T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (202) T 2id6_A 83 FMERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVT 148 (202) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCTTCC T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999999999997969999999987659778999999999999999999999998399999999 No 12 >3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii} Probab=99.85 E-value=5.7e-19 Score=160.30 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=123.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221799-8778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRP-ITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (227) -+||++|++||.++|.++||+++||++||+++|||+|+||+||+||++|+.++++...+.+...+....... .+...+. T Consensus 15 ~~~r~rIl~AA~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (211) T 3him_A 15 SKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLM 94 (211) T ss_dssp CHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 79999999999999998492507799999996899652222389899999999998878999999874100123099999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999998778865444-4412688999999999999999999999999865988899388999999999999999 Q T0611 82 FYLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITN 160 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~ 160 (227) ..+..++.....++..+..+. .....+|.....+..........+..++..+++.|.+.+.+.+....+...++..... T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 174 (211) T 3him_A 95 STVTAYVTWHADNRASARVGQYELRSLSPEHFAIIADIRRSTTKVFTRIIEAGATAGDFHPFDIEAAALAITSLGIDVSR 174 (211) T ss_dssp HHHHHHHHHHHHTHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999987376999999987622688899999999999999999999986115899977999999999999999999 Q ss_pred HH Q ss_conf 88 Q T0611 161 WM 162 (227) Q Consensus 161 w~ 162 (227) |+ T Consensus 175 ~~ 176 (211) T 3him_A 175 WF 176 (211) T ss_dssp HC T ss_pred HH T ss_conf 98 No 13 >2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 Probab=99.85 E-value=1.1e-18 Score=158.09 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=113.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522-17998778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP-EDRPITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (227) -.||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+... ...+.+.+.+. T Consensus 11 ~~tr~~Il~AA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (200) T 2hyj_A 11 QATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEPPGLRRLR 90 (200) T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTGGGGGSCTTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99999999999999997494647899999987819788956647999999999999999999999998752998788999 Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 999999999998778-----865444441268899999999999999999999999986598889938 Q T0611 82 FYLESVFDGLWSYRF-----FHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ..+..++........ +..........+|.+...+.....++...+..++..+++.|.++++.+ T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 158 (200) T 2hyj_A 91 AVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFD 158 (200) T ss_dssp HHHHHHHHHHHSCSSTTSCHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCC T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999996141234369999998752599999999999999999999999999998599999999 No 14 >3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} Probab=99.85 E-value=4e-20 Score=168.97 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=113.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221799-8778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRP-ITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (227) =+||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+........... .+.+.+. T Consensus 8 e~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~tiy~yF~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203) T 3cdl_A 8 DQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRLWNCAPPQSEVVYRPLVSLREQLL 87 (203) T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHHHHTC----CCSCCTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 89999999999999997591517899999997919889987869999999999999999999999988740366788999 Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 99999999999--87788654444412688999999999999999999999999865988899388999 Q T0611 82 FYLESVFDGLW--SYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRS 148 (227) Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~ 148 (227) ..+...+.... .+..+++.+......+|++...+..........+..+++.+++.|.++++++.... T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~d~~~~a 156 (203) T 3cdl_A 88 ELLWGKMRNLTDSSFLDLARVVVGATIHSPERAQVWLARINEREETFSAWIRAAQKDGRLKPVDPGFAA 156 (203) T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHTTCC------CHHHHHHHHHHHHTTCBCSCCHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 999999885014168999999998760398999999999999999999999999986999999999999 No 15 >2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} Probab=99.84 E-value=2.1e-19 Score=163.56 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=111.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522-179987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP-EDRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (227) +||++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.++++++.+++...++.. ....++.+.+.. T Consensus 14 ~rr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (204) T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEA 93 (204) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH T ss_conf 99999999999999973903067999999868995615674799999999999999999999999986202004899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999998778865444441--268899999999999999999999999986598889938 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLL--DSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) .+..++.....++..+..+.... ..++.....+..........+..+++.+++.|.++++.+ T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 157 (204) T 2ibd_A 94 LVTTSYEAIDASHSAVAIYQDEVKHLVANERFTYLSELNTEFRELWMGVLEAGVKDGSFRSDID 157 (204) T ss_dssp HHHHHHHHHHHSHHHHHHHHHTCGGGTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTSC T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999998595899999999884586889999999999999999999999998599999999 No 16 >3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} Probab=99.84 E-value=4.4e-19 Score=161.17 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=114.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...++.....+.+....... T Consensus 11 ~~R~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (204) T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLV 90 (204) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999973946288999999979099999776456479999999999999999999987435888999999 Q ss_pred HHHHHHH-HHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHH Q ss_conf 9999999-99877-----88654444412688999999999999999999999999865988899--388999999 Q T0611 84 LESVFDG-LWSYR-----FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQ--PEDLRSAMS 151 (227) Q Consensus 84 ~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~--~~~~~~~l~ 151 (227) +...... ..... .+.....+....+|.+.....+....+...+..++..+++.|.++++ +..+...+. T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~d~~~~a~~~~ 166 (204) T 3eup_A 91 YSSMYNDADGSLFPVGGCPLLNTTIEADDTHDALRKKAGEAILSWKKNLVTIIKKGIQAKEFRPDTDVTKIAFSMI 166 (204) T ss_dssp HHHHHHGGGGTTSCTTSCHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 9999999873201001449999998751389999999999999999999999999998599999999999999999 No 17 >3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} Probab=99.84 E-value=4.1e-19 Score=161.36 Aligned_cols=145 Identities=15% Similarity=0.229 Sum_probs=115.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221799-8778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRP-ITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (227) ..||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...+....... ++.+.+. T Consensus 10 ~~rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (196) T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYR 89 (196) T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999997391306799999980999786511189999999999999899999999986135899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 999999999998778865444441268899999999999999999999999986598889938899 Q T0611 82 FYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLR 147 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~ 147 (227) ..+..++.....++..+..+......++.......+........+..++..+++.|.+++.+.+.. T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 155 (196) T 3he0_A 90 TMWLNIWNLAGSNLNAISNRVQYDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVFKPLDNEVL 155 (196) T ss_dssp HHHHHHHHTTTSHHHHHHTTC----CCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTCBCSCCHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 999999999750468999999986088888999999999999999999999998699999999999 No 18 >3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A Probab=99.84 E-value=2.9e-18 Score=154.99 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=112.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-H-CCCCCCHHHH Q ss_conf 3779999999999998728103657999998577877899983448999999999999999998752-2-1799877899 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI-P-EDRPITLEDM 80 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~-~-~~~~~~~~~~ 80 (227) ..||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...... . .....+.+.+ T Consensus 13 ~~tr~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~yF~~K~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (220) T 3lhq_A 13 LETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVL 92 (220) T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 99999999999999998491407799999985889334776189999999999999999999999999861765615999 Q ss_pred HHHHHHHHHHHHHHHHHHHH----HH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHHH Q ss_conf 99999999999987788654----44--441268899999999999999999999999986598889938--89999999 Q T0611 81 TFYLESVFDGLWSYRFFHRD----LE--YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE--DLRSAMSL 152 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~----l~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~--~~~~~l~~ 152 (227) ...+..++.....++..... +. ......+.+...+..........+...+..+++.|.+.++.+ .+...+.. T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~~~ 172 (220) T 3lhq_A 93 REILVHILEATVTEERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRS 172 (220) T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99999999998515888889999998887430004579999999999999999999999986999999999999999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999988 Q T0611 153 NVWLVITNWM 162 (227) Q Consensus 153 ~~~~~~~~w~ 162 (227) .+..+...|+ T Consensus 173 ~~~g~~~~~l 182 (220) T 3lhq_A 173 FISGLMENWL 182 (220) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 19 >3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} Probab=99.84 E-value=6.1e-19 Score=160.09 Aligned_cols=151 Identities=10% Similarity=0.125 Sum_probs=117.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) -.||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...+..... ..+.+.+.. T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~ 91 (199) T 3crj_A 13 SDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDVET-TDPEARLNL 91 (199) T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHTCCC-CCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHH T ss_conf 8899999999999999729240789999999791999998885899999999999999998999998752-899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHH Q ss_conf 999999999987788654444---41268899999999999999999999999986598889938-8999999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEY---LLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE-DLRSAMSLNV 154 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~-~~~~~l~~~~ 154 (227) ++..++.....++..+..+.. ....+|.+...+..........+..+++.+++.|.+.+.+. .+...+...+ T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~a~~l~~~~ 167 (199) T 3crj_A 92 LLDELLVKPQENPDLSVALLEMRSQAPYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVFTDVDAEHVTRSLLTII 167 (199) T ss_dssp HHHHHHTGGGGCHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9999999998692999999999862768889999999999999999999999999869999999999999999999 No 20 >1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A Probab=99.84 E-value=1.1e-19 Score=165.53 Aligned_cols=198 Identities=15% Similarity=0.164 Sum_probs=129.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .||++|+++|.++|.++||.++||++||+++|||+|+|||||+||++|+.++++...+.+...+.... .+.++.+.+.. T Consensus 9 ~tr~~Il~aa~~l~~~~G~~~~si~~IA~~agvS~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (215) T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLEALMR 88 (215) T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999984945288999999868894508651999999999889999999999999762468999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHHH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993--88999999999999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP--EDLRSAMSLNVWLVITN 160 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~--~~~~~~l~~~~~~~~~~ 160 (227) .+..+++.....+.+ +....+...++.+...+.....++...+..++..+++.|.++++. ..+...+...+ .+ T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~d~~~~a~~i~~~~----~G 163 (215) T 1ui5_A 89 LTFGMARLCVQGPVL-RAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSV----VG 163 (215) T ss_dssp HHHHHHHHHHHCHHH-HHHHHHHHTTCCCCC-CCCHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHH----HC T ss_pred HHHHHHHHHHCCHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HH T ss_conf 999999998405699-9999986607102699999999999999999999998399999999999999999999----99 Q ss_pred HHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH Q ss_conf 8877655310022000108999999999999871-21898899999999998541 Q T0611 161 WMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEV-PYLTPEYRERVLALREKYRP 214 (227) Q Consensus 161 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-p~lt~~~~~~l~~l~~~~~~ 214 (227) +. .......+....... +..++.++. +.+.+..++.+..+..+..+ T Consensus 164 ~~----~~~~~~~~~~~~~~~----~~~~~~~ll~gl~~~~~r~~~~~~~ar~~~ 210 (215) T 1ui5_A 164 TR----VVGGTLEPAGREPRR----LAEMWYILIRGMVPVTRRARYVTLAARLEQ 210 (215) T ss_dssp TT----CC--------CHHHH----HHHHHHHHHHHHSCTTTHHHHHHHHHHHHH T ss_pred HH----HHHHHCCCCCCHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99----998544885562999----999999999776895569989999998643 No 21 >2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A Probab=99.84 E-value=1.1e-18 Score=158.10 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=122.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 99999999999987281036579999985778778999834489999999999999999987522179987789999999 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFYLE 85 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (227) |++|++||.++|.++||+++||++||+++|||+|++|+||+||++|+.+++++..+.+...+....+...+.+.+...+. T Consensus 9 R~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (192) T 2zcm_A 9 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNHDDNYSIDGLYQFLF 88 (192) T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999999999987392507799999987919889988879999999977999999999999975358981999999999 Q ss_pred HHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999-877886544444126889999999999999999999999998659888993889999999999999998877 Q T0611 86 SVFDGLW-SYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAF 164 (227) Q Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~~~ 164 (227) .++.... ....++ ......++.+...+.....+....+...+..+++.|.++.+++..... ++.+...|.-. T Consensus 89 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~ 161 (192) T 2zcm_A 89 KFIFDVDERYIKLY---VQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIALDKEDFINM----ILMFLETWYFR 161 (192) T ss_dssp HHHHHSCHHHHHHH---HGGGGCCGGGHHHHHHHHHHHHHHHHHHHHHHCCTTTBSSCHHHHHHH----HHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH----HHHHHHHHHHH T ss_conf 99987543799999---998727876689999999999999999999998689989999999999----99999999999 Q ss_pred HHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 6553100220001089999999999998712189 Q T0611 165 LKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLT 198 (227) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p~lt 198 (227) ............ ...+....+..++.|++. T Consensus 162 ~~~~~~~~~~~~----~~~~~~~~v~~ll~~~l~ 191 (192) T 2zcm_A 162 ASFSQKFGIIED----SKNRFKDQVYSLLNVFLK 191 (192) T ss_dssp HHHHHHHCCGGG----CHHHHHHHHHHHHHHHBC T ss_pred HHHCCCCCCCHH----HHHHHHHHHHHHHHHHHC T ss_conf 985466666277----999999999999999852 No 22 >2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} Probab=99.84 E-value=3.4e-18 Score=154.53 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=112.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++|++||.++|.++||+++||++||+++|||+|++|+||+||++|+.++++...+.+...+........+.+..... T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (194) T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDATGLDALRIL 89 (194) T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999999874904076999999879099888267899999999999987899999999875379859999999 Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999999877---88654444412688999999999999999999999999865988899388 Q T0611 84 LESVFDGLWSYR---FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 84 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) +..++.....+. ..+..+......+|.+...+.+......+.+..++..+++.|.+.+.+.+ T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 154 (194) T 2nx4_A 90 CREVMPINEEQLLEARIAASLWPRAMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSVGDIDVT 154 (194) T ss_dssp HHHHSCCSHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 99999999986566689999999752788999999999999999999999999986999999999 No 23 >2hyt_A TETR-family transcriptional regulator; YP_049917.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.64A {Pectobacterium atrosepticum} Probab=99.84 E-value=3.4e-19 Score=162.00 Aligned_cols=143 Identities=15% Similarity=0.279 Sum_probs=102.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) +||++||+||.++|.++||+++||++||+++|||+|||||||+||++|+.+++++....+...+.... ...++.+.+.. T Consensus 12 ~tR~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (197) T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISDTAEDDWEGFRC 91 (197) T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999986915177999999838392306450989999999999999999899999887038998999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993889999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSA 149 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~ 149 (227) .+..+++....+......+... .+.+.....+........+..++..+++.|.+.+.+.+.... T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~a~ 155 (197) T 2hyt_A 92 RCRAYLEMALEPEIQRIVLRDA---RAVLGGASPDSQRHCVESMQRLIDNLIRQGVVAEADPQALAS 155 (197) T ss_dssp HHHHHHHGGGSHHHHHHTTTHH---HHHHCSSCHHHHHHHHHHHHHHHHHHHHTTSBCSCCHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 9999999984856999999870---653105338999999999999999999859999999999999 No 24 >3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} Probab=99.84 E-value=1.2e-18 Score=157.95 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=112.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) +||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...+.... +...+.+.+.. T Consensus 14 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (212) T 3knw_A 14 AKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMN 93 (212) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999870955288999999979099999888589999999999999999999999998437998999999 Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999998778------865444441268899999999999999999999999986598889938 Q T0611 83 YLESVFDGLWSYRF------FHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 83 ~~~~~~~~~~~~~~------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ++..++........ +.....+....+|.+...+.+...++...+..+|..+++.|.++++.+ T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 161 (212) T 3knw_A 94 YLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVV 161 (212) T ss_dssp HHHHHHHC--------CHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSC T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999998852423777899999998752489999999999999999999999999998499999999 No 25 >2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=99.83 E-value=9.5e-19 Score=158.62 Aligned_cols=159 Identities=20% Similarity=0.229 Sum_probs=117.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522-179987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP-EDRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (227) .+|++|+++|.++|.++||.++||++||+++|||+|++|+||+||++|+.++++...+.+...+... ....++.+.+.. T Consensus 7 ~rr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 86 (197) T 2gen_A 7 SRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEETVRL 86 (197) T ss_dssp -CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 89999999999999975925176999999979099899778398699999999999999998889876133350699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHH Q ss_conf 9999999999877886544444--126889999999999999999999999998659888993889999-9999999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYL--LDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSA-MSLNVWLVIT 159 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~-l~~~~~~~~~ 159 (227) .+..+++....++.+++.+... ....+.+.........+....+..++..+++.|.+++.+.+.... +...+..++. T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 166 (197) T 2gen_A 87 LVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREMPDDCFASVVIGPAHDLAR 166 (197) T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999998969999999962324686799999999999999999999999986999999999999999999999999 Q ss_pred HHH Q ss_conf 988 Q T0611 160 NWM 162 (227) Q Consensus 160 ~w~ 162 (227) .|+ T Consensus 167 ~~~ 169 (197) T 2gen_A 167 QWL 169 (197) T ss_dssp HHH T ss_pred HHH T ss_conf 998 No 26 >2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} Probab=99.83 E-value=4.3e-19 Score=161.23 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=110.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .||++||+||.++|.++||.++||++||+++|||+|++|+||+||++|+.+++++..+++...++... ...++.+.+.. T Consensus 30 ~tr~~IL~aA~~lf~~~G~~~~s~~~IA~~agVs~~t~Y~hF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (230) T 2iai_A 30 YTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELFGILDEEHARVGTAAERLEY 109 (230) T ss_dssp -CCSCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHTTSHHHHSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 99999999999999985926371999999858283125306899999999999999999999999998521208999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP 143 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~ 143 (227) ++..++.....++..+..+.... ..+............+...+..+++.+++.|.++++. T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~d~ 169 (230) T 2iai_A 110 VVRRMVEVLMAELPYVTLLLRVR-GNTGTERWALERRREFDHRVAALLKDAAAEGDVRADV 169 (230) T ss_dssp HHHHHHHHHHHTHHHHHHHHHCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSSS T ss_pred HHHHHHHHHHHCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999986949989999975-2674479999999999999999999999859999999 No 27 >3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A* Probab=99.83 E-value=1.6e-18 Score=157.02 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=109.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .||++||++|++||.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... ...++.+.+.. T Consensus 41 ~tR~~Il~aA~~Lf~e~G~~~~T~~~IA~~AGvs~~t~Y~hF~sK~~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (273) T 3c07_A 41 QTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVREVLARETDLEARLAG 120 (273) T ss_dssp HHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTTHHHHCCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999984933178999999989199999999598789999999999999999999987359999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHHHHHHHH Q ss_conf 99999999998778865444441268899999999999999999999999986598889938---899999999999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE---DLRSAMSLNVWLVIT 159 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~---~~~~~l~~~~~~~~~ 159 (227) ++..+++....++.+...+.......+.....+.....+....+..+++..+..+....+.. .....+...+..++. T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 200 (273) T 3c07_A 121 VLKVWLDIATPYHEFAVQFFKNAADPDSPLSPFSPESEHARVEAIGIHRAVLAGAKTKVPEELRDILPELMWLSQMGLVL 200 (273) T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHTCTTSTTSTTSGGGHHHHHHHHHHHHHHHHTSSSCCCGGGTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998879999999985267522457899999999999999999986166568803789999999999999999 Q ss_pred HHHH Q ss_conf 9887 Q T0611 160 NWMA 163 (227) Q Consensus 160 ~w~~ 163 (227) .|+. T Consensus 201 ~wl~ 204 (273) T 3c07_A 201 YWIF 204 (273) T ss_dssp HHHH T ss_pred HHHC T ss_conf 9954 No 28 >3kz9_A SMCR; transcriptional regulator, quorum sensing, DNA-binding, transcription regulation, transcription regulator; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A Probab=99.83 E-value=1.3e-18 Score=157.70 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=114.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHH Q ss_conf 3779999999999998728103657999998577877899983448999999999999999998752217-998778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED-RPITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (227) -+||++|++||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+....+ ..++.+.+. T Consensus 16 ~~rr~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (206) T 3kz9_A 16 LKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIA 95 (206) T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99999999999999997192205699999987869131156339999999999999999999999998605999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999999877886544444-1268899999999999999999999999986598889938 Q T0611 82 FYLESVFDGLWSYRFFHRDLEYL-LDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) .++..++.....++.+.+.+... ....+.+...+..........+..++..+++.|.+.++.+ T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 159 (206) T 3kz9_A 96 NITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHN 159 (206) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCCTTTHHHHHHHTHHHHHHHHHHHHHHHHTTSBCTTSC T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999999879499999999876068999999999999999999999999998599999998 No 29 >2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1 Probab=99.83 E-value=4e-18 Score=153.99 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=112.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522-179987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP-EDRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (227) +||++||++|.++|.++||.++||++||+++|||+|+||+||+||++|+.+++++....+...+... ....++.+.+.. T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (194) T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRA 87 (194) T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999974925187999999879099988476089999999999999999999999986159998999999 Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999998778----865444441268899999999999999999999999986598889938 Q T0611 83 YLESVFDGLWSYRF----FHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 83 ~~~~~~~~~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ++..+......... +..........+|.+...+......+...+..++..++..|.++++.+ T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 153 (194) T 2g7s_A 88 YIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGT 153 (194) T ss_dssp HHHHHHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCSSC T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999997624114259999998750288899999999999999999999999998499999999 No 30 >2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.83 E-value=3.6e-18 Score=154.28 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=110.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877-89999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITL-EDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (227) .||++||++|.++|.++|| ++||++||+++|||+|+|||||+||++|+.+++++..+.+...+....+...+. +.+.. T Consensus 20 ~tr~~Il~aA~~lf~e~G~-~~s~~~IA~~Agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (215) T 2hku_A 20 QTRDALFTAATELFLEHGE-GVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDAATAETVGDYTEK 98 (215) T ss_dssp CHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 9999999999999998587-786999999865042368886599999999999999999999987612778999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP 143 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~ 143 (227) ++..++......+.++..+......++++...+.+........+...+..++..+.+.++. T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (215) T 2hku_A 99 LVGSLLGPGAPSVELFTSAMLMTGRRSELRDLITDTLRTLHSSGEVALIRTLMRTGWQLRA 159 (215) T ss_dssp HHHHHHTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTCCCSS T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 9999970254036999999997536988999999999999999999999999864876789 No 31 >3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... Probab=99.83 E-value=7.1e-19 Score=159.56 Aligned_cols=146 Identities=24% Similarity=0.259 Sum_probs=105.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987-78999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPIT-LEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (227) |+||++||+||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+........+ ...+. T Consensus 1 m~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (194) T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFY 80 (194) T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 95999999999999997591517799999987909888814388999999999999999999999998625999999999 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 99999999999877--88654444412688999999999999999999999999865988899388999 Q T0611 82 FYLESVFDGLWSYR--FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRS 148 (227) Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~ 148 (227) .............+ .....+......+|.+...+.....++...+..++..+++.|.+++.+.+... T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~a 149 (194) T 3bqz_B 81 LYNELSLTTQYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVS 149 (194) T ss_dssp HHHHHHHHCSSSGGGHHHHHHHHTTC--CC-CCC-CHHHHHHHHHHHHHHHHHHHHTTSCCCSCHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 999999998752736678999999850588999999999999999999999999986999988999999 No 32 >2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.83 E-value=6.3e-18 Score=152.45 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=106.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) -+||++||++|.++|.++||.++|+++||+++|||+|+||+||+||++|+.+++++....... ......+...+.. T Consensus 39 ~~tR~~Il~AA~~l~~e~G~~~~Ti~~IA~~agVs~~tlY~yF~sKe~Ll~av~~~~~~~~~~----~~~~~~~~~~l~~ 114 (225) T 2id3_A 39 ARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQSLP----RADTGALEEDLRA 114 (225) T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHCCC----CCCCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH----HHHCCCCHHHHHH T ss_conf 999999999999999984934077999999969198887010799999999999988899886----5421341447999 Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 999999999987--78865444441268899999999999999999999999986598889938 Q T0611 83 YLESVFDGLWSY--RFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 83 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) .+..+......+ ...+..+......+|.+...+.....+..+.+..++.++++.|.++++.+ T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~d 178 (225) T 2id3_A 115 NARLVVRTLDDPRQGRLFRALIAASLCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVPDGTD 178 (225) T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBC T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999986741007999999974158899999999999999999999999998599999999 No 33 >2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} Probab=99.82 E-value=1.4e-19 Score=164.91 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=110.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+........+.+.+... T Consensus 17 ~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (207) T 2rae_A 17 TTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGDFDAHLAEMRAQLAAQPDDIPIVDGLTAA 96 (207) T ss_dssp CHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSHHHHHHHHHHHHHHSCTTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 89999999999999972903067999999979199899888799999999999999999999998632489999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 999999999877886544444126889999999999999999999999998659888993 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP 143 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~ 143 (227) +..++.....++..+..+..+...+|.+..........+...+...+.... |...++. T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 154 (207) T 2rae_A 97 LLQFNAFPASEEINHRKRMGLILRVPALQAYSVVMYEGWRNVIAEYVASRL--GTSPTDH 154 (207) T ss_dssp HHHTTCCCGGGHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH--TSCTTSH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCC T ss_conf 999999886130799999998745887899999999999999999999864--9998864 No 34 >2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* Probab=99.82 E-value=8.7e-18 Score=151.41 Aligned_cols=159 Identities=23% Similarity=0.282 Sum_probs=113.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217--998778999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED--RPITLEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~--~~~~~~~~~ 81 (227) +||++||++|.++|.++||.++||++||+++|||+|+|||||+||++|+.++++.+.+.+......... ..+....+. T Consensus 11 ~tR~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (210) T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLAETHDHLARASESEDEVDPLGCMR 90 (210) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHHHTTHHHHHHHTCTTCSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999975914066999999989198899788699999999889999999999999876022377799999 Q ss_pred HHHHHHHHHHHHHHH---HHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHH Q ss_conf 999999999998778---86544---444126889999999999999999999999998659888993--8899999999 Q T0611 82 FYLESVFDGLWSYRF---FHRDL---EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP--EDLRSAMSLN 153 (227) Q Consensus 82 ~~~~~~~~~~~~~~~---~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~--~~~~~~l~~~ 153 (227) ..+..++.....+.. ++... .......+.+.........++...+...|..+++.|.++++. ......+... T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~~~~ 170 (210) T 2xdn_A 91 KLLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAMFAY 170 (210) T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHSCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999987587988899998888872533499999999999999999999999999859999999999999999999 Q ss_pred HHHHHHHHH Q ss_conf 999999988 Q T0611 154 VWLVITNWM 162 (227) Q Consensus 154 ~~~~~~~w~ 162 (227) +..+...|+ T Consensus 171 ~~G~~~~~l 179 (210) T 2xdn_A 171 VDGLIRRWL 179 (210) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999998 No 35 >2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp} Probab=99.82 E-value=2.8e-18 Score=155.07 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=109.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217-9987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED-RPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (227) .||++||++|.++|.++||.++||++||+++|||+|+||+||+||++|+.+++++..+.+...+..... ..++.+.+.. T Consensus 10 ~rre~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (197) T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDFWTVLDI 89 (197) T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 69999999999999973914065999999878691157776599999999999999999999999986158999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP 143 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~ 143 (227) .+..++.....++.++..+...... +.....+....+.....+..++..+++.|.++++. T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~ 149 (197) T 2f07_A 90 LIDETFLITERHKDIIVLCYSGLAI-DHSMEKWETIYQPYYSWLEKIINKAIANHEVTEGI 149 (197) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTC T ss_pred HHHHHHHHHHHCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999998791899999987048-60389999999999999999999999859999999 No 36 >2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A Probab=99.82 E-value=3.5e-20 Score=169.35 Aligned_cols=146 Identities=13% Similarity=0.178 Sum_probs=109.3 Q ss_pred CCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH Q ss_conf 9737--79999999999998728103657999998577877899983448999999999999999998752217998778 Q T0611 1 MTMK--TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLE 78 (227) Q Consensus 1 ~~~~--TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~ 78 (227) |+-+ ||++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.++++++...............++.+ T Consensus 2 ma~~e~tre~Il~aA~~lf~e~G~~~~si~~IA~~agvs~~tlY~yF~~K~~L~~av~~~~~~~~~~~~~~~~~~~~~~~ 81 (186) T 2jj7_A 2 MASREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPIN 81 (186) T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHSCSSCCCCHHHHTTTCHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 88678999999999999999859141879999998791988777877999999999999999888779998752367899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 99999999999999877886544444126889999999999999999999999998659888993889 Q T0611 79 DMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDL 146 (227) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~ 146 (227) .+..++..++.....++.+.+.+......++.....+..........+..++..+++.|.++++++.. T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~G~~~~~~~~~ 149 (186) T 2jj7_A 82 ALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINH 149 (186) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHSCCTTHHHHGGGTHHHHTTHHHHHHHHHHTTSCCCSCHHH T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 99999999999999793899999998741807799999999999999999999999879989999999 No 37 >3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} Probab=99.82 E-value=1.9e-18 Score=156.40 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=105.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHH Q ss_conf 799999999999987281036579999985778778999834489999999999999999987522179-9877899999 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDR-PITLEDMTFY 83 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (227) +|++||++|.++|.++||.++||++||+++|||+|+||+||+||++|+.+++++..+.+...+...... .++.+.+... T Consensus 15 rr~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (203) T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRA 94 (203) T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 99999999999999729341779999999890988997882999999999999999999999988634589989999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 9999999998778865444441268899999999999999999999999986598889938899999999 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLN 153 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~ 153 (227) +..+++....++..+..+......+|.+...+... ...+...+..+++.|...+.+......++.. T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203) T 3f1b_A 95 LEGFLGFVGKHRKSWMVLYRQAMGQQAFVGSVQSS----RDRLIELTAHLLESSTKDPEPGQDFELIAIA 160 (203) T ss_dssp HHHHHHHHHHCHHHHHHHHHHCC-CCTTTTTHHHH----HHHHHHHHHHHHHHSCC-----CHHHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf 99999998868699999998742687899999999----9999999999999744278843029999999 No 38 >2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.82 E-value=3.4e-18 Score=154.49 Aligned_cols=159 Identities=19% Similarity=0.243 Sum_probs=114.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799-87789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRP-ITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (227) .+|++|++||.++|.++||.++||++||+++|||+|+|||||+||++|+.++++...+.+...++...... ...+.+.. T Consensus 3 err~~Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (208) T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGDSARDRLTR 82 (208) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC-CCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 89999999999999974903067999999969199999877489999999999999988999999875269988999999 Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHH Q ss_conf 9999999999877---886544444126889999999999999999999999998659888993--88999999999999 Q T0611 83 YLESVFDGLWSYR---FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP--EDLRSAMSLNVWLV 157 (227) Q Consensus 83 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~--~~~~~~l~~~~~~~ 157 (227) .+...+.....+. .++..+......+|.+...+.+........+..++..+++.|.++++. ......+...+..+ T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~l~~~~~gl 162 (208) T 2g3b_A 83 SLLGEIQDRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEGL 162 (208) T ss_dssp HHHHTSCSSHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999997240147779999999753478899999999999999999999999998599999999999999999999999 Q ss_pred HHHHH Q ss_conf 99988 Q T0611 158 ITNWM 162 (227) Q Consensus 158 ~~~w~ 162 (227) ...|+ T Consensus 163 ~~~~l 167 (208) T 2g3b_A 163 SGRWL 167 (208) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99996 No 39 >2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} Probab=99.82 E-value=7.7e-19 Score=159.32 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=100.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.+||.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+.+... ........ . T Consensus 30 ~tR~~Il~AA~~lf~~~G~~~~Tv~~Ia~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~---~~~~~~~~---~ 103 (226) T 2pz9_A 30 STRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAERETTALIEATQ---LDPADLPG---Y 103 (226) T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTC---CCTTCHHH---H T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC---CCHHHHHH---H T ss_conf 99999999999999985935288999999969487479788599999999999998899888621---45545689---9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 99999999987788654444412688999999999999999999999999865988899388 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) +..++..+..++.+++.+.......+...........+....+...+..+++.|.++++.+. T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 165 (226) T 2pz9_A 104 AGILFDHFAARPDHYRLITWGRLELAESADNTSGPLQATIAGKLDKLRDAQRIGLLDPAWDP 165 (226) T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTC--------CHHHHHHHHHHHHHHHHHTTSSCTTSCH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH T ss_conf 99999999988799999999986253002999999999999999999999984999999999 No 40 >2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} Probab=99.82 E-value=5e-19 Score=160.74 Aligned_cols=137 Identities=14% Similarity=0.195 Sum_probs=111.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||++|.++|.++|| ++|+++||+++|||+|+||+||+||++|+.+++++..+++...+.......++.+.+..+ T Consensus 13 ~tR~~Il~aA~~l~~~~G~-~~tv~~IA~~agvs~~t~Y~~F~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (196) T 2qwt_A 13 RNRARVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLAAEGPGEALFVF 91 (196) T ss_dssp HHHHHHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 9999999999999998597-788999999969599799878599999999999999999999988860279999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999998778865444441268899999999999999999999999986598889938 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..+++....++.+...+... .+................+..++..+++.|.++++.+ T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~r~d~~ 149 (196) T 2qwt_A 92 MRDMVRSAAADYGLVDALVGY---GLDLEVAAPGAEAAFLATLGELLAAAQRAGTVRADVD 149 (196) T ss_dssp HHHHHHHHHHHHHHHHHHHTT---TCCHHHHSTTHHHHHHHHHHHHHHHHHHTTSBCSSCC T ss_pred HHHHHHHHHHCHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999997685999999874---7431466799999999999999999998599999999 No 41 >3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} Probab=99.82 E-value=1.2e-18 Score=157.83 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=106.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...+....... +.+.+..+ T Consensus 17 ~tr~~Il~aA~~lf~e~G~~~~si~~IA~~agvs~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (218) T 3gzi_A 17 QNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPVLAQLHKARRET-RQESPAAL 95 (218) T ss_dssp HHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHTS-CTTCHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHH T ss_conf 89999999999999983923057999999868896404415999999999889999999999999987368-35259999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 999999999877886544444---1268899999999999999999999999986598889938 Q T0611 84 LESVFDGLWSYRFFHRDLEYL---LDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..++.....++.+++.+... ....|..........+.....+..++..+++.|.+.++.+ T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (218) T 3gzi_A 96 LQTYYSVMSKHPHFPRLMLRIAGLDQSLPENAEVTKAFYEVVNFENIAIFQRLKDKNLLKDDVD 159 (218) T ss_dssp HHHHHHHHHHSTTHHHHHHHHHTSCTTSGGGHHHHHHHHHHGGGCCTTHHHHHHHTTCBCTTCC T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999997916989999998607688899999999999999999999999998499888989 No 42 >2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} Probab=99.81 E-value=7.9e-18 Score=151.72 Aligned_cols=126 Identities=24% Similarity=0.346 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) |+||++||++|.++|.++||+++||++||+++|||+|++|+||+||++|+.+++++..+.+...++.... ..+.+. T Consensus 1 m~TRe~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 76 (179) T 2eh3_A 1 MGTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTHKKIISLFEENKE-KTPEEL--- 76 (179) T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHH--- T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHH--- T ss_conf 9599999999999999749251769999998780934154518999999999999999999999986023-899999--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999987788654444412688999999999999999999999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKL 133 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 133 (227) +..++....+++..+..+......++.+...+.+........+...++.. T Consensus 77 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (179) T 2eh3_A 77 -LEMFLEVLYREKKVVYIFLFDLLCSEKFRNIYFEKIEDAKRRFEKFLEKH 126 (179) T ss_dssp -HHHHHHHHHHTHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf -99999999877067999999861588889999999999999999999761 No 43 >3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} Probab=99.81 E-value=1.2e-17 Score=150.38 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=113.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CC-CCCHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79-98778999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DR-PITLEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 81 (227) .||++||+||+++|.++||+++||++||+++|||+|+||+||+||++|+.++++++.+.+...+.... .. ..+.+.+. T Consensus 30 ~tr~~Il~aA~~l~~~~G~~~~si~~IA~~aGvS~~tly~~F~sK~~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (222) T 3bru_A 30 LAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLR 109 (222) T ss_dssp GHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999982903077999999959486589799588999999999999999999999997468999999999 Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 999999999998778865-----44444126889999999999999999999999998659888993 Q T0611 82 FYLESVFDGLWSYRFFHR-----DLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP 143 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~ 143 (227) .++..+......++.... ...+....++.+...+......+...+..+|..+++.|.++++. T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~ 176 (222) T 3bru_A 110 LFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADH 176 (222) T ss_dssp HHHHHHHHHHHTTTTCCCCHHHHHHHTGGGSCTHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCTTS T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999998626067778999999875148999999999999999999999999999839999999 No 44 >3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} Probab=99.81 E-value=6.9e-18 Score=152.20 Aligned_cols=144 Identities=20% Similarity=0.253 Sum_probs=102.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522----179987789 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP----EDRPITLED 79 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~----~~~~~~~~~ 79 (227) +||++||+||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+... ......... T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~si~~IA~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (211) T 3bhq_A 12 RKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDIIESVTTLLSEAIFMEGG 91 (211) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 99999999999999984935188999999848893306663898899999999999999999999887514764259999 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 99999999999998778--86544444126889999-9999999999999999999986598889938899 Q T0611 80 MTFYLESVFDGLWSYRF--FHRDLEYLLDSDPRLRQ-DYREFTNRCLAAINRIFAKLADAGIIQPQPEDLR 147 (227) Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~ 147 (227) +...+............ .+..+......+|+... .+..........+..++..+...|.+++++.... T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 162 (211) T 3bhq_A 92 LQQLARRLIAVLMDEELLKLRRLIIANADRMPQLGRAWYEKGFERMLASTASCFQKLTNRGLIQTGDPYLA 162 (211) T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSBCCSSHHHH T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 99999999998606177899999999761083999999999999999999999999998699999999999 No 45 >2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} Probab=99.81 E-value=1.6e-17 Score=149.34 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=111.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217--998778999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED--RPITLEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~--~~~~~~~~~ 81 (227) +||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+......... ...+.+.+. T Consensus 11 ~tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (219) T 2w53_A 11 ATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDLR 90 (219) T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 99999999999999985924077999999848895425532899999999899999999999875300255545089999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHH Q ss_conf 999999999998778865444-----44126889999999999999999999999998659888993--88999999999 Q T0611 82 FYLESVFDGLWSYRFFHRDLE-----YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP--EDLRSAMSLNV 154 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~--~~~~~~l~~~~ 154 (227) ..+...+.....++....... ......+.+..............+..++..+++.|.++++. ......+...+ T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~~~~~~ 170 (219) T 2w53_A 91 AVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATV 170 (219) T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999999998687888999999998511275999999999999999999999999998599999999999999999999 Q ss_pred HHHHHHHH Q ss_conf 99999988 Q T0611 155 WLVITNWM 162 (227) Q Consensus 155 ~~~~~~w~ 162 (227) ..+...|+ T Consensus 171 ~g~~~~~~ 178 (219) T 2w53_A 171 LGVLHGAM 178 (219) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999998 No 46 >2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} Probab=99.81 E-value=2.2e-17 Score=148.39 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=94.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+..... .++...+... T Consensus 13 ~rR~~Il~AA~~l~~~~G~~~~tv~~IA~~aGvs~~tlY~yF~sK~~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 91 (231) T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVEPRQ-GPLGARLLRV 91 (231) T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCCSC-SCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHH T ss_conf 999999999999999729240779999999791999886327988999999999999999999986542-9956679999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999877886544444--126889999999999999999999999998659 Q T0611 84 LESVFDGLWSYRFFHRDLEYL--LDSDPRLRQDYREFTNRCLAAINRIFAKLADAG 137 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G 137 (227) +..+++....++..+..+... ....+.... ............+......+ T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 143 (231) T 2qib_A 92 MGRYFDFVDEHGPGFSALMRGGPAVGSTTTNA----LVDSVRQAAYVQILSHLDVT 143 (231) T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHH----HHHHHHHHHHHHHHHHCCCC T ss_conf 99999999989799999995285547699999----99999999999999862788 No 47 >2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.81 E-value=8.6e-18 Score=151.46 Aligned_cols=128 Identities=9% Similarity=0.073 Sum_probs=94.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) -.||++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+.+.+........+.+.+.. T Consensus 8 ~~t~e~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~~K~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (203) T 2np5_A 8 STSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSEVERGGDPARALFA 87 (203) T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 07999999999999997391408799999986908988850479899999999999999999999987527987999999 Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998778865---4444412688999999999999999999999 Q T0611 83 YLESVFDGLWSYRFFHR---DLEYLLDSDPRLRQDYREFTNRCLAAINRIF 130 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 130 (227) .+..++.....++.... .+......+|.+...+......+...+...+ T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (203) T 2np5_A 88 AMSQLLPLDEARSREAHVMAAFAVRAATSPSLAEIRRKTLFTIRTGLSAVL 138 (203) T ss_dssp HHHTTSCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999998858147699999998535899999999999999999999998 No 48 >3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} Probab=99.81 E-value=3.9e-18 Score=154.04 Aligned_cols=144 Identities=18% Similarity=0.211 Sum_probs=97.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179-98778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDR-PITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (227) -.||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++++.+.+...+...... +.+..... T Consensus 7 a~tR~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (194) T 3dpj_A 7 AQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGDSPRARIA 86 (194) T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999997492518899999985849566875468999999999999999999999987726750688999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 999999999998778865444----441268899999999999999999999999986598889938899999 Q T0611 82 FYLESVFDGLWSYRFFHRDLE----YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAM 150 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l 150 (227) ..+..++......+.....+. +....++.+ .....+....+...+..+++.|...++++.....+ T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 155 (194) T 3dpj_A 87 SFIDLMIMNRAKITRYGCPVGSLCTELSKLDHAA----QGQANGLFTLFRDWLQRQFAEAGCTTEAPALAMHL 155 (194) T ss_dssp HHHHHHHHTHHHHHHHCCHHHHHHHHHHHTTCTT----HHHHTHHHHHHHHHTHHHHHHTTTCTTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 9999999987510466689999998612488999----99999999999999999997448999879999999 No 49 >3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} Probab=99.81 E-value=6e-18 Score=152.64 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=106.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC-HHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987-78999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPIT-LEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 81 (227) +||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... ....+ ..... T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215) T 3e7q_A 14 QRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLS 93 (215) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999973934077999999979488889888599999999999999999999998876327886788899 Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999999998778---8654444412688999999999999999999999999865988899388 Q T0611 82 FYLESVFDGLWSYRF---FHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 82 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) ..+...+......+. .+..+......++.+...+......+...+..++..+...|.+.+.+.. T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (215) T 3e7q_A 94 AFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWADFDAE 160 (215) T ss_dssp HHHHHHTSHHHHCGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 9999999988744157789999999704788899999999999999999999999876899998899 No 50 >2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} Probab=99.81 E-value=2.6e-17 Score=147.90 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=102.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+++.... +...+.+.+... T Consensus 23 ~~r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 98 (214) T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGYFHAVEDTLAFP----DTGDVRADLLAQ 98 (214) T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHCCC----CSSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH T ss_conf 9999999999999998394408899999996878534742279999999999999888887533----024624579999 Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999998778--86544444126889999999-9999999999999999986598889938 Q T0611 84 LESVFDGLWSYRF--FHRDLEYLLDSDPRLRQDYR-EFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..++.....++. .+.........+|.+...+. .........+..++..+++.|.++++.+ T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (214) T 2zb9_A 99 LRAFTHVMTRTPGGRILTELIGAAQTDADLATAYRQLYSAQRRALAAERLRHARELGQIRPDVD 162 (214) T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSSCTTCC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999874700359999999871186899999999999999999999999998599999998 No 51 >2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1 Probab=99.80 E-value=5.2e-18 Score=153.12 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=96.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221-7998778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (227) -+||++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... ....+.... T Consensus 7 ~~~R~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199) T 2o7t_A 7 LKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQLQAISTFPTDPEGV- 85 (199) T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCHHHH- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH- T ss_conf 9999999999999999849140779999998686902277618999999999999999999999999875489989999- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 9999999999987788654444412688999999999999999999999999865988899388 Q T0611 82 FYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) +..+......+..............+................+..++..+++.|.++++.+. T Consensus 86 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~d~~~ 147 (199) T 2o7t_A 86 --WTSFNQLLFDRGLGSLVPALAPESLDDLPDEVSALRRTTEKNTTTLINLAKQHGLVHHDIAP 147 (199) T ss_dssp --HHHHHHHHHHTTHHHHHHHHCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCH T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH T ss_conf --99999999874000599999886241136999999999999999999999985999999999 No 52 >3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans} Probab=99.80 E-value=1.5e-17 Score=149.57 Aligned_cols=138 Identities=24% Similarity=0.316 Sum_probs=103.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) ..||++||+||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+....+...+.+.+.. T Consensus 25 ~~tr~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (217) T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFLTTIFADINSQDSLDRFKK 104 (217) T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTHHHHSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999987193427899999987809441554299999999999999999999999987516992999999 Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 999999999987------7886544444126889999999999999999999999998659888 Q T0611 83 YLESVFDGLWSY------RFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQ 140 (227) Q Consensus 83 ~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~ 140 (227) .+..++...... ..++..+......+|.+...+..........+...+..+...|... T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (217) T 3mvp_A 105 NPKEWLNVLINQLLAAEDKIFHAQIEMLAYAIPQAKALLEEHNNNLKNLTYKCLLYYSDQAANP 168 (217) T ss_dssp CHHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999999987622237999999987415889999999999999999999999998737899 No 53 >2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 Probab=99.80 E-value=3.1e-18 Score=154.81 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=91.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++||.++||++||+++|||+|+|||||+||++|+.+++++..+.+..... .....+... T Consensus 8 ~tR~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sKe~L~~a~~~~~~~~~~~~~~------~~~~~~~~~ 81 (202) T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKMLDLAISVP------VDPDDIEGW 81 (202) T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHSC------CCGGGHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC------CCCCHHHHH T ss_conf 99999999999999974914077999999859198899678779999999999999999998515------410118999 Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999987788654444----41268899999999999999999999999986598889938 Q T0611 84 LESVFDGLWSYRFFHRDLEY----LLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +...+.....++.+.+.+.. .....+. ......+....+...+..++..|.++++.+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (202) T 2d6y_A 82 IDRLLDYHAAHPELLRLLFWEGMEYGTAELP----HEAERQEHYARKVAAVRDGQERGVITDAIP 142 (202) T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHHTTSCCT----THHHHHHHHHHHHHHHHHHHHTTSSCCSSC T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999998989999999998607621047----999999999999999999998599999999 No 54 >2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} Probab=99.80 E-value=8e-18 Score=151.69 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=104.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) +||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... ...++.+.+.. T Consensus 11 ~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~yF~~Ke~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (212) T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLASDLPPRRKMYE 90 (212) T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 89999999999999973913077999999868591403461898789999999999999999999998238999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999999987788654444-412688999999999999999999999999865988899388 Q T0611 83 YLESVFDGLWSYRFFHRDLEY-LLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED 145 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~ 145 (227) ++...+.....+......+.. .....+................+..++..+++.|.+.+.+.+ T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 154 (212) T 2ras_A 91 FFARRFVVMRRKWEADPVKLQTYIEVGNDYFEQVRSYIDLADHYLGEIIGEAMSDGAFSGLEVD 154 (212) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSTTCCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 9999999998731210999999987374249999999999999999999999986999999999 No 55 >3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} Probab=99.80 E-value=4.6e-18 Score=153.53 Aligned_cols=143 Identities=18% Similarity=0.256 Sum_probs=103.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522-179987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP-EDRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (227) -||++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+... .....+.+.+.. T Consensus 3 a~R~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (189) T 3geu_A 3 AMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQ 82 (189) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 89999999999999871915288999999879098799898799999999999999999999999876058999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 999999999987788654444412688999999999999999999999999865988899388999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRS 148 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~ 148 (227) .+..++.....+... ....+....+.+.........+....+...+..+++.|.+++++.+... T Consensus 83 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 146 (189) T 3geu_A 83 FLFEFIFDIEERYIR--MYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQN 146 (189) T ss_dssp HHHHHHHHSCHHHHH--HHHHGGGCCGGGCTTHHHHHHHHHHHHHHHHHTTCCTTTBCSCHHHHHH T ss_pred HHHHHHHHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 999999985757899--9999975787447999999999999999999999983999999078999 No 56 >2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.80 E-value=3.8e-18 Score=154.14 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=106.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217--998778999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED--RPITLEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~--~~~~~~~~~ 81 (227) .||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...+..... ...+...+. T Consensus 9 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (209) T 2gfn_A 9 ERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLR 88 (209) T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999971913077999999969399999998199999999999999999999999886325898788999 Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999999987788---65444441268899999999999999999999999986598889938 Q T0611 82 FYLESVFDGLWSYRFF---HRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) .++..++.....+... +..+......+|.+...+.....+....+...|..+++.|.++++.+ T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 154 (209) T 2gfn_A 89 NITASILPLDERRLAMTRVFLFFYAEGAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDLD 154 (209) T ss_dssp HHHHTTSCCSHHHHHHHHHHHHHHHHC----CCSHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSC T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999999874615768999999860489899999999999999999999999998599999999 No 57 >2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} Probab=99.79 E-value=4.6e-18 Score=153.49 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=109.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||++|.+||.++||+ +||++||+++|||+|+||+||+||++|+.+++++..+.+...++......++.+.+..+ T Consensus 16 ~~Re~Il~aA~~l~~~~G~~-~Ti~~IA~~agvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (199) T 2rek_A 16 RNYDRIIEAAAAEVARHGAD-ASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLAAEHPPATALTRW 94 (199) T ss_dssp HHHHHHHHHHHHHHHHHGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999999986978-87999999979199999867589889999999999998889999875179999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999998778865444441268899999999999999999999999986598889938 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..++.....++.+...+.... ..+................+..++..+++.|.++++.+ T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 154 (199) T 2rek_A 95 LTSLAVFGAVTRGAARSLLPAT-GTNTGAALDSRCEQLLTEAGADLLARAQEDGTVRDDVT 154 (199) T ss_dssp HHHHHHHHHHHHHHGGGC----------CCCCHHHHHHHHHHHHHHHHHHHHTTSSCTTCC T ss_pred HHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999863737999999862-47520799999999999999999999998599999998 No 58 >2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.79 E-value=2.3e-18 Score=155.79 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=108.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 79999999999998728103657999998577877899983448999999999999999998752217998778999999 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFYL 84 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227) +|++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+........+.......+ T Consensus 12 ~Re~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~~lY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (202) T 2i10_A 12 DDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRPTAHEAVLDFL 91 (202) T ss_dssp CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHCSCCHHHHHHHHTSSSHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 19999999999999869211779999999790999998871899999999999988899999999872886103799999 Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999877886-----5444441268899999999999999999999999986598889938 Q T0611 85 ESVFDGLWSYRFFH-----RDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 85 ~~~~~~~~~~~~~~-----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) .............. .........++.+...+......+...+..++..+++.|.++++.+ T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~d 156 (202) T 2i10_A 92 TGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPAGTD 156 (202) T ss_dssp HHHHHHHC------CCCCSSCBTTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999987420125589999999870268999999999999999999999999998599999999 No 59 >2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3} Probab=99.79 E-value=1.8e-18 Score=156.62 Aligned_cols=140 Identities=15% Similarity=0.188 Sum_probs=103.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++|++||.++|.++||.++||++||+++|||+|++|+||+||++|+.++++++.+.+...+.....+..+.+.+... T Consensus 7 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195) T 2dg7_A 7 GAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFGGSELLPPAVARAVLAADPGAAPLTAVLDA 86 (195) T ss_dssp THHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTTTSSCCHHHHHHHHHTSCTTSCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 39999999999999986915177999999848693413542898899999999999998899998633589949999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 9999999998778865444441268899999999999999999999999986598889938899 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLR 147 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~ 147 (227) +..++.....+......+......+|.+.......... +...+..++..|.+.++..... T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~ 146 (195) T 2dg7_A 87 MSQVGAQLVAQVEGAAQRRAVIDASPELQERERTKSAA----ISRAVQDALVRRQVDADTAELV 146 (195) T ss_dssp HHHHTTTTTTCCTTHHHHHHHHHTCHHHHHHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCHHHH T ss_conf 99999999860168999999986051589999999999----9999999998369998879999 No 60 >2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Probab=99.79 E-value=1.6e-17 Score=149.48 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=98.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221--799877899 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE--DRPITLEDM 80 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~--~~~~~~~~~ 80 (227) -+||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... ...++.+.+ T Consensus 23 ~~tr~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (214) T 2oer_A 23 SELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLERL 102 (214) T ss_dssp CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 99999999999999997293307799999997909989998849999999999999999999999998752589999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998778865444441268899999999999999999999999986 Q T0611 81 TFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLAD 135 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~ 135 (227) ..++..++.....++..+..+.... ..+................+..++..+.. T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (214) T 2oer_A 103 RRLVLAFVRSECEEAAIRVALSDAA-PLYRDADEAREVKAEGARVFQAFLREALP 156 (214) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-TTC----CHHHHHHHHHHHHHHHHHHHCS T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999875929999999851-25566199999999999999999998710 No 61 >3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} Probab=99.79 E-value=1.3e-17 Score=150.02 Aligned_cols=138 Identities=13% Similarity=0.065 Sum_probs=102.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) .||++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...++... ....+.+.+.. T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~yF~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (203) T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFLQ 93 (203) T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999974945288999999879098788676799999999999999999999999875138989999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999999987788654444-41268899999999999999999999999986598889 Q T0611 83 YLESVFDGLWSYRFFHRDLEY-LLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQP 141 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~ 141 (227) .+...+.....++..+..+.. .....+.....+..........+...+..+...+.... T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (203) T 3ccy_A 94 IVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANR 153 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTCH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999999998858099999999988579888999999999999999999999853578775 No 62 >2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} Probab=99.79 E-value=3.2e-18 Score=154.67 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=109.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++|+++|.++|.++||+ +|+++||+++|||+|+||+||+||++|+.+++++..+.+...+.......++.+.+..+ T Consensus 15 ~tR~~Il~aa~~l~~~~G~~-~Ti~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (194) T 2q24_A 15 RNRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCDSVPGLLAELPPAEALRAW 93 (194) T ss_dssp -CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999999987956-76999999949888679988589999999999999999888877752269999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999998778865444441268899999999999999999999999986598889938 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..++.....++.++..+.......+. .......++...+..+++.+...|.++++.+ T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~r~d~~ 151 (194) T 2q24_A 94 TRRFIDYATAKLGMADALRAVVASGGD---PYGDSRQLIQSALTALMDAAAAAGEIRSDIR 151 (194) T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCC---SCTTHHHHHHHHHHHHHHHHHHTTSSCSCSC T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 999999998693899999986303321---5899999999999999987014488899988 No 63 >3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} Probab=99.79 E-value=3.9e-18 Score=154.04 Aligned_cols=139 Identities=15% Similarity=0.130 Sum_probs=96.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+... .......+..+ T Consensus 17 ~~R~~Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 94 (208) T 3cwr_A 17 VVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVESWIAPIFPGFEAD--PQDAAAALERI 94 (208) T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTTTTSCCSS--CSSHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHH T ss_conf 9999999999999998591406799999985889665024799999999999999999999999875--16806899999 Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999--9877886544444126889-9999999999999999999999986598889938 Q T0611 84 LESVFDGL--WSYRFFHRDLEYLLDSDPR-LRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +....... ......+..+.......+. ...............+..++..+++.|.++++.+ T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 158 (208) T 3cwr_A 95 VYDIAQAVLSREAVSLFRMLASDADLRNRFLPAYNANGIERSRRELARWLDQQASAGRLPLPIP 158 (208) T ss_dssp HHHHHHHHSBHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSSCCSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9999999975322368999999862082999999999999999999999999998699999999 No 64 >3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} Probab=99.78 E-value=3.7e-17 Score=146.68 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=95.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CC-CHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522179--98-77899 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDR--PI-TLEDM 80 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~--~~-~~~~~ 80 (227) .||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++.+..+.+...+...... +. ..... T Consensus 12 ~~R~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198) T 3cjd_A 12 ALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEVNGRTFARLGAAVGAVVADGQDDHPNERL 91 (198) T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999982933132999999858895500241698788999999999999999999987507873036999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999998778865444-4412688999999999999999999999999865 Q T0611 81 TFYLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADA 136 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~ 136 (227) .............++..+..+. .....++.+.+.+.+........+...+..+... T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (198) T 3cjd_A 92 IAMSHAYLAFAREHPKLWRALFDVEMRSDGPVPQWYGHAMAQLFSYITTPLAKIFPE 148 (198) T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHCTT T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999998687999999984414661149999999999999999999986325 No 65 >3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} Probab=99.78 E-value=1.6e-17 Score=149.47 Aligned_cols=130 Identities=16% Similarity=0.237 Sum_probs=89.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217-9987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED-RPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (227) .||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+...+..... .+.+...+.. T Consensus 35 ~tR~~Il~AA~~l~~e~G~~~~T~~~IA~~aGvs~gt~Y~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (221) T 3g7r_A 35 EARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAADGQVRA 114 (221) T ss_dssp HHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999984924078999999979198899877587999999999999999999999987158870799999 Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999877886544----444126889999999999999999999999998659 Q T0611 83 YLESVFDGLWSYRFFHRDL----EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAG 137 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l----~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G 137 (227) .+...+.....+......+ .......+.+...... ....+...+......+ T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 169 (221) T 3g7r_A 115 VARSIVDGIRSPGFRGCAFLNAVAEYPDPAHPVHRAVLA----HRQWFLDTVTELLAQV 169 (221) T ss_dssp HHHHHHHHHTSTTCCSCHHHHHHHHCCCTTSHHHHHHHH----HHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHC T ss_conf 999999997376301449999998706788899999999----9999999999999873 No 66 >3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} Probab=99.78 E-value=1.7e-17 Score=149.22 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=102.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221-79987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-DRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (227) +||++|++||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+.... ...++.+.+.. T Consensus 11 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (203) T 3b81_A 11 NKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLKESEEGLNSIERLKK 90 (203) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999973915076999999879188899998899999999999999999999999987436999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 9999999999877886544444126889999999999999999999999998659888993889 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDL 146 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~ 146 (227) .+..++.....++........ ...+................+..++..+++.|.++++.+.. T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (203) T 3b81_A 91 ILLAGIKITSVNEQVKEINSP--SNKIFHQKLMVAIIKYFAPIYADIISQGNEEGVFKVKYPLE 152 (203) T ss_dssp HHTCCC-----------CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSCHHH T ss_pred HHHHHHHHHHCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 999999998627678999866--05200399999999999999999999999859999999999 No 67 >1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1 Probab=99.78 E-value=3.8e-16 Score=139.10 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=93.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH--------CCCCC Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522--------17998 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP--------EDRPI 75 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~--------~~~~~ 75 (227) +||++||+||.++|.++||++ ||++||+++|||+|++||||+||++|+.+++++..+.+...+... ..... T Consensus 12 ~tr~~Il~aA~~lf~~~G~~~-t~~~IA~~aGvs~~~iY~yF~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (224) T 1t33_A 12 QAKSQLIAAALAQFGEYGLHA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAP 90 (224) T ss_dssp HHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSSSC T ss_pred HHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999879075-6999999838992421578899999999999999999999999999877654301122 Q ss_pred CHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 7789999999999999987------7886544-4441268899999999999999999999999986598889 Q T0611 76 TLEDMTFYLESVFDGLWSY------RFFHRDL-EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQP 141 (227) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~------~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~ 141 (227) +...+..+........... ..+...+ .+....++.+.....+........+..++..++..|.... T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (224) T 1t33_A 91 DRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDT 163 (224) T ss_dssp CHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHHSCCHHHHHHHHHTHHHHHHHHHHHHHHHHTCCTTSH T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 2348999999999999999717103799999998760154899999999999999999999999847999961 No 68 >1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=99.77 E-value=8.9e-17 Score=143.86 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=90.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) ..||++|+++|.++|.++||+++||++||+++|||+|++||||+||++|+.+++++..+.+.+.+........+.+.+.. T Consensus 7 ~~tre~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 86 (183) T 1zk8_A 7 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEAAEDKRMDEAIHA 86 (183) T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 63899999999999997094405799999985889430332289878899999999999999999987400577999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999999999987788654444412688999999 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDY 115 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 115 (227) .+..+++....++..++.+ ....+...... T Consensus 87 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 116 (183) T 1zk8_A 87 LGEAYVAFVRKHPGLYEAT---FLRDEEVRKAG 116 (183) T ss_dssp HHHHHHHHHHHCHHHHHHT---TCCCHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHH---HHCCHHHHHHH T ss_conf 9998999999898999999---83563027999 No 69 >3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} Probab=99.77 E-value=1e-16 Score=143.40 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=61.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227) .||++||+||.++|.++||.++||++||+++|||+|+|||||+||++|+.+++++..+.+...+... T Consensus 35 ~rR~~Il~aA~~l~~e~G~~~~si~~IA~~agvs~~tlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~ 101 (237) T 3kkd_A 35 QRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFVERNAEALSAF 101 (237) T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----CHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999997492508799999998929899988788999999999999999999999998 No 70 >2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1 Probab=99.77 E-value=5.5e-17 Score=145.42 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=68.9 Q ss_pred CCHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HCCC-C Q ss_conf 9737-79999999999998728103657999998577877899983448999999999999999998752----2179-9 Q T0611 1 MTMK-TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI----PEDR-P 74 (227) Q Consensus 1 ~~~~-TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~----~~~~-~ 74 (227) |+.+ ||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+++...+.. .... . T Consensus 3 ~~~~etre~IldaA~~lf~~~G~~~~s~~~IA~~agvs~~~lY~~F~sK~~L~~av~~~~~~~~~~~~~~~l~~~~~~~~ 82 (235) T 2fbq_A 3 MAQSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPE 82 (235) T ss_dssp -CHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 98389999999999999998592407799999997939889999859999999999999999999999999862779655 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 87789999999999999 Q T0611 75 ITLEDMTFYLESVFDGL 91 (227) Q Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (227) .....+..++..+++.. T Consensus 83 ~~~~~~~~~l~~~~~~~ 99 (235) T 2fbq_A 83 AQHATLEDLLHLLVSQA 99 (235) T ss_dssp CCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 66658999999999999 No 71 >3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A Probab=99.77 E-value=3e-17 Score=147.42 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=93.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522179987789999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTF 82 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227) .+||++||++|.++|.++||+++||++||+++|||+|++||||+||++|+.+++++..+.+...++...... +...+.. T Consensus 7 ~~tre~Il~aA~~l~~e~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 85 (195) T 3frq_A 7 LKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGA-GPQGLWE 85 (195) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHH T ss_conf 157999999999999974923077999999878997717676779999999999999999999998644479-9999999 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998778865--4444412688999999999999999999999999865988899388999999999999999 Q T0611 83 YLESVFDGLWSYRFFHR--DLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITN 160 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~--~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~ 160 (227) .+..++......+.+.. .+......+|++....... ...+...+ ..+.-..++......+...+..+... T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~g~~~~ 157 (195) T 3frq_A 86 FLQVLVRSMNTRNDFSVNYLISWYELQVPELRTLAIQR----NRAVVEGI----RKRLPPGAPAAAELLLHSVIAGATMQ 157 (195) T ss_dssp HHHHHHHTSCCSSCTTHHHHHHHHHHHSHHHHHHHHHH----HHHHHHHH----HTTCCTTCCTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999843636999999997642799999999999----99999999----85669888899999999999999999 Q ss_pred H Q ss_conf 8 Q T0611 161 W 161 (227) Q Consensus 161 w 161 (227) | T Consensus 158 ~ 158 (195) T 3frq_A 158 W 158 (195) T ss_dssp H T ss_pred H T ss_conf 9 No 72 >2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=99.76 E-value=3.5e-17 Score=146.91 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=99.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++|++||.++|.++||.++||++||+++|||+|+||+||+||++|+.+++.+..+.... .............. T Consensus 12 ~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 87 (192) T 2fq4_A 12 ETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSAAAARLP----VPDTGSALNDILIH 87 (192) T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHSCCCCC----CCCCSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHCCCCHHHHHHH T ss_conf 99999999999999985934077999999989099899634699999999999997899988----75036817899999 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999987-788654444412688999999-99999999999999999986598889938 Q T0611 84 LESVFDGLWSY-RFFHRDLEYLLDSDPRLRQDY-REFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 84 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) +..++...... ...+..+......+|.+...+ ..........+..++..+++.|.++++.+ T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 150 (192) T 2fq4_A 88 ATSLANFLISREGTIINELVGEGQFDSKLAEEYRVRYFQPRRLQAKQLLEKGIKRGELKENLD 150 (192) T ss_dssp HHHHHHHHHSTTTTHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCTTCC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999987331589999999861287999999999999999999999999998699999988 No 73 >3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} Probab=99.76 E-value=1.3e-17 Score=150.21 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=105.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--HH-CCCCCCHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875--22-179987789 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLD--IP-EDRPITLED 79 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~--~~-~~~~~~~~~ 79 (227) ++||++|++||.++|.++||.++||++||+++|||+|++|+||+||++|+.+++++..+.+..... .. ....++.+. T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (196) T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTR 88 (196) T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 89999999999999997495528799999997909988858769999999999999999999999975403579999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999998778865444441268899999999999999999999999986598889938899999999 Q T0611 80 MTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLN 153 (227) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~ 153 (227) +..++..++.....++..+..+... ...+................+...+..+++.|.++..+.+....++.. T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (196) T 3col_A 89 IRLYVQQVYDYSLANPDSLTIIQQI-KALNGQGMTISAADADPNNIVANLLTAAIDAKVIKQLPVSLHMGVVFS 161 (196) T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHH-HHHHCC-------CCGGGTHHHHHHHHHHHTTSBCSSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 9999999999998694999999986-517543499999999999999999999998599999999999999999 No 74 >3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} Probab=99.76 E-value=8.2e-18 Score=151.60 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=82.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522-179987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP-EDRPITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (227) .||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+... .....+.+.+.. T Consensus 22 ~~r~~Il~aA~~l~~~~G~~~~si~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 101 (207) T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMGVGFKKSAPPGESPQDAVYN 101 (207) T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC----------CSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999973903077999999989099899775799999999999999999999999873369999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998778865444 Q T0611 83 YLESVFDGLWSYRFFHRDLE 102 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~ 102 (227) ++..++.....++.++..+. T Consensus 102 ~~~~~~~~~~~~~~~~~~~~ 121 (207) T 3bjb_A 102 VLVRATRGLLRRPALSTAMI 121 (207) T ss_dssp HHHHHHHHHHTSHHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHH T ss_conf 99999999987959999999 No 75 >2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} Probab=99.76 E-value=8e-17 Score=144.21 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=69.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++|+++|.++|.++||+++|+++||+++|||+|+||+||+||++|+.+++++..+.+...+................ T Consensus 9 ~rR~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~y~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (193) T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGAAADRDEAREA 88 (193) T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999999972904067999999989099999766389999999999999999999998873348998999999 Q ss_pred H Q ss_conf 9 Q T0611 84 L 84 (227) Q Consensus 84 ~ 84 (227) + T Consensus 89 ~ 89 (193) T 2dg8_A 89 V 89 (193) T ss_dssp H T ss_pred H T ss_conf 9 No 76 >3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} Probab=99.75 E-value=4.1e-16 Score=138.85 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=94.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522179987-789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPIT-LEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (227) .||++||++|.++|.++|| ++||++||+++|||+|+|||||+||++|+.+++++..+.+.+.+........+ ...+.. T Consensus 9 ~~R~~Il~aA~~l~~~~G~-~~t~~~IA~~aGvs~~~iy~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (190) T 3jsj_A 9 SPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILY 87 (190) T ss_dssp CHHHHHHHHHHHHHHHHCT-TCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 1999999999999997698-882999999979099999888299999999999999999999999987416755788899 Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 9999999999877----88654444412688999999999999999999999999865988899388999999 Q T0611 83 YLESVFDGLWSYR----FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMS 151 (227) Q Consensus 83 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~ 151 (227) .+..+........ .+..........++.+.....+....+...+...+.. .|. ++++.....+. T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~a~~l~ 155 (190) T 3jsj_A 88 VFERVESQAGAPDFQGCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAER---GGA--SDPDLLARQLI 155 (190) T ss_dssp HHHHHHHHHTSTTCCSCHHHHHHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHHH---TTC--SSHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCC--CCHHHHHHHHH T ss_conf 999999997154301049999987625678899999999999999999999988---399--99999999999 No 77 >3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} Probab=99.75 E-value=7.7e-17 Score=144.32 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=69.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 79999999999998728103657999998577877899983448999999999999999998752217998778999999 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFYL 84 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227) +|++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+........+...+...+ T Consensus 11 rR~~Il~AA~~l~~~~G~~~~t~~~IA~~aGvs~~~~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (201) T 3iuv_A 11 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGFARVVAAHPALSDPEADLSGEL 90 (201) T ss_dssp HHHHHHHHHHHHHHTTCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHTTCGGGGCTTSCHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 99999999999999849130679999998689945199875999999999999999999999997642499799999999 Q ss_pred HHH Q ss_conf 999 Q T0611 85 ESV 87 (227) Q Consensus 85 ~~~ 87 (227) ... T Consensus 91 ~~~ 93 (201) T 3iuv_A 91 ARV 93 (201) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 78 >3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} Probab=99.75 E-value=2.4e-16 Score=140.59 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH--CCCC-CCHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522--1799-87789 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP--EDRP-ITLED 79 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~--~~~~-~~~~~ 79 (227) ..||++||+||.+||.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+... ...+ ...+. T Consensus 42 ~~tr~~Il~aA~~Lf~~~G~~~~tv~~IA~~AGvs~~t~Y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (229) T 3bni_A 42 AERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRGA 121 (229) T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 99999999999999998590207699999997919989999869999999999999999999999998741689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999998778865444441268899999999999999999999999986 Q T0611 80 MTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLAD 135 (227) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~ 135 (227) +..++..++.....++.++..+.. ...................+...+..... T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (229) T 3bni_A 122 LDTVLDEYLAMKRTAPGFSLIDFG---NQIPVGDRHAVPNHRVAERLTELLSGYLG 174 (229) T ss_dssp HHHHHHHHHHHHHHSTTTTTCSCC-----------------CHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999998659289999970---76786256899999999999999999716 No 79 >3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} Probab=99.75 E-value=5.6e-17 Score=145.37 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=95.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522179-987789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDR-PITLEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (227) .+|++||++|.++|.++||.++|+++||+++|||+|+|||||+||++|+.+++..+.+.+...+...... ..+...... T Consensus 15 ~rR~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (221) T 3c2b_A 15 PRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAPQLADHLE 94 (221) T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHTSSCCCCCCCSCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999974904087999999989098799988799899999999999999999999987403531999999 Q ss_pred HHHHHHHHHHHHH---HHHH-HHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 9999999999877---8865-444441268899999-999999999999999999986598889938899 Q T0611 83 YLESVFDGLWSYR---FFHR-DLEYLLDSDPRLRQD-YREFTNRCLAAINRIFAKLADAGIIQPQPEDLR 147 (227) Q Consensus 83 ~~~~~~~~~~~~~---~~~~-~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~ 147 (227) .+...+......+ .+.. .+.......|..... ...........+..++..+++.|.+..++.+.. T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 164 (221) T 3c2b_A 95 VFAHDLLDVLAGDVSLALNRLAIGQASRDGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAEEA 164 (221) T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCC---CHHHHHHHHTTHHHHHHHHHHHHHHHHTTSBCCSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 9999999987212578999999998602577999999999999999999999999998699999999999 No 80 >2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* Probab=99.74 E-value=9.9e-17 Score=143.51 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=76.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 97377999999999999872810365799999857787789998344899999999999999999875221799877899 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDM 80 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227) ++.-||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+++.. .........+.+ T Consensus 3 ~~~lTR~~Il~AA~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~L~~av~~~~~~~~~~---~~~~~~~~~~~~ 79 (234) T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDIVLTEVEV---PEPEPGRWAEQV 79 (234) T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHGGGCCC---CCCCTTCHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HCCCCCCHHHHH T ss_conf 97242999999999999971944168999999978587799998799899999999999999987---334469989999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998778865444 Q T0611 81 TFYLESVFDGLWSYRFFHRDLE 102 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~ 102 (227) ...+..+.+....++..++.+. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~ 101 (234) T 2opt_A 80 KEMCRSLRRMFLAHRDLARIAI 101 (234) T ss_dssp HHHHHHHHHHHHHSTTHHHHHT T ss_pred HHHHHHHHHHHHHCCCHHHHHH T ss_conf 9999999999998924999986 No 81 >2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} Probab=99.74 E-value=3.6e-17 Score=146.81 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=95.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHH Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217---99877899 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED---RPITLEDM 80 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~---~~~~~~~~ 80 (227) .+|++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+..... .+.+.+.+ T Consensus 28 erR~~Il~AA~~l~~~~G~~~~Ti~~IA~~aGvs~~~lY~~F~sK~~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (215) T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIHERLGPDPSVVEESGRKPQNLELA 107 (215) T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGGGTC---------------CHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 99999999999999984914077999999868996327865898999999999999999999999987436898799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999999999877886544---4441268899999999999999999999999986598889 Q T0611 81 TFYLESVFDGLWSYRFFHRDL---EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQP 141 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~ 141 (227) ...+...+.....++..+..+ ......+|++...+.+. ....+..++..+...|...+ T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 168 (215) T 2qko_A 108 IEYMQGLFGRITRDRTGYLALQELRLEAVRRPELRTTLTRT---ISENLKRDIGFHLDSGLPGD 168 (215) T ss_dssp HHHHHHHTTTTTTTHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHHHHHHHHHHHHTCSCC T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCC T ss_conf 99999999998608489999999998525799999999999---99999999998754589995 No 82 >2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} Probab=99.73 E-value=1.7e-17 Score=149.17 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=96.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||+||+++|.++||.++||++||+++|||+|+|||||+||++|+.++..... .............+.+.+... T Consensus 48 ~tR~~Il~AA~~lf~e~G~~~vTv~~IA~~AGVs~gtlY~hF~sK~~Ll~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 125 (260) T 2of7_A 48 RTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTREDIVLTDEYDPV--MAAELAARPAGEPWSDSLRHV 125 (260) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHTSSCSHHH--HHHHHHTCCSSCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHH T ss_conf 999999999999999819453889999999698898999985899999999999998--788986521489999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHHHHHH Q ss_conf 999999999877886-5444441268899999999999999999999999986598889938--8999999999999999 Q T0611 84 LESVFDGLWSYRFFH-RDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE--DLRSAMSLNVWLVITN 160 (227) Q Consensus 84 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~--~~~~~l~~~~~~~~~~ 160 (227) +..++.....++... ..+......+|.+...+......+...+...+... .|....+.. .+...+...+..+... T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~~~~a~~~~~~~~~~~~~ 203 (260) T 2of7_A 126 LRKALGLGAGEEAELIRLRTRLLAEVPAVRARMLENMSDTGRMLARAIADR--TGLDPDGLEVRIVSMSLVGGLMEVSRY 203 (260) T ss_dssp HHHHHTCSSSSHHHHHHHHHHHHHHCHHHHHHHHHHTTSCCCHHHHHHHHH--HCCCTTSHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999985064899999998713798999999999999999999999986--389977447999999999999999999 Q ss_pred HH Q ss_conf 88 Q T0611 161 WM 162 (227) Q Consensus 161 w~ 162 (227) |. T Consensus 204 ~~ 205 (260) T 2of7_A 204 WA 205 (260) T ss_dssp HH T ss_pred HH T ss_conf 98 No 83 >2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} Probab=99.73 E-value=1.1e-15 Score=135.80 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=72.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+++...+......... ...... T Consensus 23 ~~R~~Il~AA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (231) T 2zcx_A 23 QREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRYFETREQIFLKITAEGWKEWSAELCARLRELPG-AAPDAV 101 (231) T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TCHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHH T ss_conf 9999999999999997095407799999996959899978879999999999999999999999998745994-409999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999998778865 Q T0611 84 LESVFDGLWSYRFFHR 99 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (227) ...+......++.+.. T Consensus 102 ~~~~~~~~~~~~~~~~ 117 (231) T 2zcx_A 102 GQVFAATLAARPLFCD 117 (231) T ss_dssp HHHHHHHHHTCHHHHH T ss_pred HHHHHHHHHHCHHHHH T ss_conf 9999999986925889 No 84 >2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1 Probab=99.73 E-value=1e-15 Score=135.85 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=93.1 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH Q ss_conf 73779999999999998728103657999998577877899983448999999999999999998752217998778999 Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMT 81 (227) Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227) +.+||++|++||.+||.++||+++||++||+++|||+|++|+||+||++|+.+++++..+++... .. ...+ .. T Consensus 11 ~~~tk~~Il~Aa~~L~~e~G~~~~Tv~~Ia~~agvs~~t~Y~yF~sKe~Ll~~~~~~~~~~~~~~---~~-~~~~---~~ 83 (195) T 2iu5_A 11 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFENDFAELIND---NS-DYYG---WQ 83 (195) T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHTS---SC-CSSC---HH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---CC-CCCC---HH T ss_conf 79999999999999998769740679999998793876676874999999999999999999985---22-6046---89 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHHHH Q ss_conf 9999999999987788654444412688999999999999999999999999865988899388---9999999999999 Q T0611 82 FYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPED---LRSAMSLNVWLVI 158 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~---~~~~l~~~~~~~~ 158 (227) .........+..++.++..+... ++.....+ .......+...+......+....++.+ +...+...+..+. T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195) T 2iu5_A 84 NELLLLLRYLDENQIFYQKIFVI---DKNFEHFF---LIQWENLLDKVIFDQEKKSDYHWSDLEKSFICRYNAAAICAIT 157 (195) T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH---CTTHHHHH---HHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 87678999999989999999866---63389999---9999999999999999865888882249999999999999999 Q ss_pred HHHHH Q ss_conf 99887 Q T0611 159 TNWMA 163 (227) Q Consensus 159 ~~w~~ 163 (227) ..|+. T Consensus 158 ~~~~~ 162 (195) T 2iu5_A 158 RESII 162 (195) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99988 No 85 >2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.73 E-value=8.4e-17 Score=144.03 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=69.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH Q ss_conf 3779999999999998728103657999998577877899983448999999999999999998752217998778999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227) -+||++|++||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+....+.......+. T Consensus 15 ~~~R~~Il~aA~~l~~~~G~~~~t~~~Ia~~aGvs~gtlY~~F~sKe~L~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (216) T 2oi8_A 15 TQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLRAAAASGADLAGLA 93 (216) T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 9999999999999999719441889999999797986999975998999999999999999999987307644299999 No 86 >2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} Probab=99.72 E-value=4.1e-17 Score=146.35 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=79.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-C-CCCCH-HH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221-7-99877-89 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE-D-RPITL-ED 79 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~-~-~~~~~-~~ 79 (227) ..||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++..+.+...+.... . ...+. +. T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tlY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (210) T 2qco_A 12 LARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIKNGTLKEI 91 (210) T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHCTTCTTCSSSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 89999999999999997393528899999985889025887598999999999999999999999998764022219999 Q ss_pred HHHHHHHHHHHHHHHH--HHHHHH-HHHHCCCHHHHHHHHH Q ss_conf 9999999999999877--886544-4441268899999999 Q T0611 80 MTFYLESVFDGLWSYR--FFHRDL-EYLLDSDPRLRQDYRE 117 (227) Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~l-~~~~~~~~~l~~~~~~ 117 (227) +..++...+.....+. .+++.+ .+....++.+...... T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (210) T 2qco_A 92 LTSFGLAFIEIFNQPEAVAFGKIIYSQVYDKDRHLANWIEN 132 (210) T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHHGGGCSSCHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999998606166899999999760388999999999 No 87 >2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} Probab=99.72 E-value=6.4e-17 Score=144.94 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=78.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 97377999999999999872810365799999857787789998344899999999999999999875221799877899 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDM 80 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227) |+-.||++||++|.++|.++||.++||++||+++|||+|+|||||+||++|+.++++...+.+...... ....+..+.+ T Consensus 1 ~a~~tR~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~-~~~~~~~~~l 79 (207) T 2vpr_A 1 MAKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHHHVLP-LPNETWQDFL 79 (207) T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHHHHHHHHCCCCSC-CTTCCHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHH T ss_conf 972379999999999999719552889999999686877899988988999999999999987764145-4359999999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999987788654 Q T0611 81 TFYLESVFDGLWSYRFFHRD 100 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (227) ..++..+.+....++..... T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (207) T 2vpr_A 80 RNNAKSFRQALLMYRDGGKI 99 (207) T ss_dssp HHHHHHHHHHHHHSTTHHHH T ss_pred HHHHHHHHHHHHHCCCHHHH T ss_conf 99999999999988389999 No 88 >3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} Probab=99.72 E-value=1.5e-15 Score=134.72 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=78.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++||+++||++||+++|||+++|||||+||++|+.+++++..+.+........ ...+.+.+... T Consensus 2 ~~R~~Il~AA~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (209) T 3bqy_A 2 HDRARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVDGVADAAGATG-DGDWSERTARL 80 (209) T ss_dssp -CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHTTTGGGGGCSTT-SSCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHH T ss_conf 77999999999999974945277999999979298799998799898999999988888874102565-78989999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999877886544444 Q T0611 84 LESVFDGLWSYRFFHRDLEYL 104 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~ 104 (227) +..+.+....++.+++.+... T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (209) T 3bqy_A 81 ARALRAALLAHRDGARVFAGT 101 (209) T ss_dssp HHHHHHHHHTSTTHHHHHHTC T ss_pred HHHHHHHHHHCHHHHHHHHHC T ss_conf 999999999882499998534 No 89 >2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* Probab=99.72 E-value=2e-15 Score=133.65 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=80.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHH Q ss_conf 973779999999999998728103657999998577877899983448999999999999999998752217-9987789 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED-RPITLED 79 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (227) |--.+|++||+||.++|.++||.++||++||+++|||+|+|||||+||++|+.+++++..+++...+..... ...+.+. T Consensus 1 mr~~~Re~Il~AA~~l~~e~G~~~~s~~~IA~~aGvs~~~lY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185) T 2yve_A 1 MRTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRDPEDPLER 80 (185) T ss_dssp CCSCHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCSSTTSHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 97789999999999999983925087999999868192318453489999999999999999999999987389999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999999998778865444441268899999999 Q T0611 80 MTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYRE 117 (227) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 117 (227) +..++......... ....+......+|.+...+.+ T Consensus 81 l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 115 (185) T 2yve_A 81 LRAVVVTLAENVSR---PELLLLIDAPSHPDFLNAWRT 115 (185) T ss_dssp HHHHHHHHTSCCCH---HHHHHHHHGGGSHHHHHHHHH T ss_pred HHHHHHHHHHHCCC---HHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999873347---378999872179999999999 No 90 >3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} Probab=99.72 E-value=8.3e-17 Score=144.07 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=74.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 97377999999999999872810365799999857787789998344899999999999999999875221799877899 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDM 80 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227) ++..||++||++|.++|.++||.++||++||+++|||+|+||+||+||++|+.+++++..+++....... ...++.+.+ T Consensus 22 ~~~~~Re~Il~AA~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~Ll~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 100 (211) T 3fiw_A 22 MTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQAAMAPHAAEPLPE-PGEDWHGWF 100 (211) T ss_dssp --CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHHHTTHHHHTSCCCC-TTSCHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHH T ss_conf 2487999999999999998593536599999998938869999889999999999998888874324576-689989999 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999998778865 Q T0611 81 TFYLESVFDGLWSYRFFHR 99 (227) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ 99 (227) ......++.....++.... T Consensus 101 ~~~~~~~~~~~~~~~~~~~ 119 (211) T 3fiw_A 101 LRNTRSFRRTLLARRDGAR 119 (211) T ss_dssp HHHHHHHHHHHHTSTTHHH T ss_pred HHHHHHHHHHHHHCCCHHH T ss_conf 9999999999997911799 No 91 >2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} Probab=99.71 E-value=2.4e-16 Score=140.59 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=87.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++||+||.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+++.... .......+.+... T Consensus 29 ~tre~Il~AA~~l~~e~G~~~~T~~~IA~~aGVs~~tlY~hF~sKe~Ll~av~~~~~~~~~~~~---~~~~~~~~~l~~~ 105 (241) T 2hxi_A 29 WSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVADRILLSAMDGY---RPEGDWKQRLTAV 105 (241) T ss_dssp CCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHHHHHHHHHHHTTC---CCCSCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHH T ss_conf 0799999999999998292406699999997909989999869999999999999998865303---5679989999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999987788654444412688999999999999999999999999865988 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGII 139 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l 139 (227) +..+......++.+++.+.......+.. ......++..+.+.|.- T Consensus 106 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~-----------~~~~~~~~~~l~~~g~~ 150 (241) T 2hxi_A 106 ALRLRESFGQQPQLAAVWGRHGSGGTGS-----------RLMMEEVLQALRASGLP 150 (241) T ss_dssp HHHHHHHTTTCHHHHHHHHHHCCCSHHH-----------HHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCHHH-----------HHHHHHHHHHHHHCCCC T ss_conf 9999999998924999997635678258-----------99999999999985998 No 92 >2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.71 E-value=2.4e-16 Score=140.66 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=74.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHH Q ss_conf 377999999999999872810365799999857787789998344899999999999999999875221799877-8999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITL-EDMT 81 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (227) -.||++||+||.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+.+.............. ..+. T Consensus 29 ~~tR~~Il~aA~~l~~~~G~~~~T~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (212) T 2np3_A 29 TRTREAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQALELPGKIEEAITAAAQGGLDGIGERVV 108 (212) T ss_dssp ------CHHHHHHHC---------------------------CCC-CHHHHHHHCHHHHHHHHHHHHTSSCSTTHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 69999999999999998492306799999997809655447672999999866786777999987652268544899999 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999998778865 Q T0611 82 FYLESVFDGLWSYRFFHR 99 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (227) .....++.....+..+.. T Consensus 109 ~~~~~~~~~~~~~~~~~~ 126 (212) T 2np3_A 109 RAHLSVWDDVSSRPALMT 126 (212) T ss_dssp HHHHHHHHHHHTCHHHHH T ss_pred HHHHHHHHHHHHCHHHHH T ss_conf 999999987630579999 No 93 >2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} Probab=99.70 E-value=4.8e-16 Score=138.36 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=77.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||++|.++|.++||+++||++||+++|||+++|||||+||++|+.++++....++....... ....+.+.+... T Consensus 16 ~tr~~Il~aA~~l~~e~G~~~~t~~~IA~~aGvs~~~lY~~F~~K~~L~~av~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 94 (237) T 2hxo_A 16 LSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVVTAAVTAGPTG-AADSPQDAVRAV 94 (237) T ss_dssp CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHHHHHHHHHTCSCCC-TTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHH T ss_conf 5899999999999997292406799999997909888988879999999999999998864212233-359999999999 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999877886544 Q T0611 84 LESVFDGLWSYRFFHRDL 101 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l 101 (227) ...+++....++.+...+ T Consensus 95 ~~~~~~~~~~~p~~~~~l 112 (237) T 2hxo_A 95 ALGLWDATEAHPWLATQL 112 (237) T ss_dssp HHHHHHHHHHCTHHHHHH T ss_pred HHHHHHHHHHCCCHHHHH T ss_conf 999999999890599999 No 94 >1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1 Probab=99.70 E-value=1.2e-15 Score=135.36 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=74.3 Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 799999999999987-2810365799999857787789998344899999999999999999875221799877899999 Q T0611 5 TRDKILLSSLELFND-KGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 5 TR~~Il~aA~~lf~e-~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) ||++||+||.++|.+ +||+++||++||+++|||+|+|||||+||++|+.+++++..+++ ..........+.+..+ T Consensus 6 tr~~Il~AA~~lf~e~~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~----~~~~~~~~~~~~~~~~ 81 (220) T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHF----QEPALCGEWYSDLLAF 81 (220) T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTC----CCCCCCSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH----CCCCCCCCHHHHHHHH T ss_conf 599999999999988189420579999999796898999996989999999999998663----3675448989999999 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998778865444 Q T0611 84 LESVFDGLWSYRFFHRDLE 102 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~ 102 (227) ...+.+...+|+.+...+. T Consensus 82 ~~~~~~~~~~~p~~~~l~~ 100 (220) T 1z0x_A 82 MENYYDLYQQFPCAVAIEI 100 (220) T ss_dssp HHHHHHHHHHSTTHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHH T ss_conf 9999999987935999997 No 95 >1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=99.69 E-value=2.8e-16 Score=140.06 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=87.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHH Q ss_conf 77999999999999872810365799999857787789998344-89999999999999999987522179-98778999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN-KSDIIYEIFQEYEKLVDYYLDIPEDR-PITLEDMT 81 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s-Ke~Ll~av~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (227) +||++||++|.++|.++||+++||++||+++|||+|+|||||+| |+.|+.++.+...+.+...+...... ..+...+. T Consensus 6 ~tR~~Il~aA~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (191) T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQ 85 (191) T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999999999983903066999999879098899888599088899999999988899999876512302578999 Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99999999999877886-----54444412688999999999999999999999999865988899 Q T0611 82 FYLESVFDGLWSYRFFH-----RDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQ 142 (227) Q Consensus 82 ~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~ 142 (227) .++...+.......... ..........+.+...+..... .+...+..+...|.+.+. T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 147 (191) T 1sgm_A 86 LFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFK----SWEAVFARKLMENGFAEE 147 (191) T ss_dssp HHHHHHHHTTSSGGGCCCCTTHHHHHHHTTSCHHHHHHHHHHHH----HHHHHHHHHHHHTTCCHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCC T ss_conf 99999999974030346889999986224578999999999999----999999999987699965 No 96 >2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A Probab=99.68 E-value=1.4e-15 Score=134.92 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=87.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522179987-789999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPIT-LEDMTF 82 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (227) +||++||+||.++|.++| .+||++||+++|||+|+||+||+||++|+.+++++..+.+...++.......+ .+.+.. T Consensus 14 ~tr~~Il~aa~~l~~~~G--~~T~~~IA~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (190) T 2v57_A 14 RTRRAILDAAMLVLADHP--TAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDAALRR 91 (190) T ss_dssp HHHHHHHHHHHHHHTTCT--TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 999999999999998869--962999999969199999777389999999999999999999999876469999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999998778865444441268899999999999999999999999986598889938 Q T0611 83 YLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ++..+++.......++.. .....+|.+.+.+.. ....++..+.+.|.++++.+ T Consensus 92 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 144 (190) T 2v57_A 92 VVESQLDLGPIVLFVYYE--PSILADPELAAYFDI-------GDEAIVEVLNRASTERPEYP 144 (190) T ss_dssp HHHHHHTTCTHHHHHHHC--TTTTTSHHHHHHHTC-------SCHHHHHHHHHTC-----CC T ss_pred HHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHH-------HHHHHHHHHHHCCCCCCCCC T ss_conf 999999712899999865--444488999999999-------99999999998198889999 No 97 >2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=99.68 E-value=2.6e-16 Score=140.32 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++||.++||++||+++|||+|+|||||+||++|+.++++.+.+++.... .....+..+.+..+ T Consensus 19 ~tR~~Il~AA~~lf~~~G~~~~S~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~--~~~~~~~~~~l~~~ 96 (243) T 2g7l_A 19 LSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDALLGEVDLTG--AGAEEDWREQLRAV 96 (243) T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHHTTSSCSSC--C---CCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHH T ss_conf 4999999999999998093307899999997919888988779889999999986677651454--57666769999999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999987788654444 Q T0611 84 LESVFDGLWSYRFFHRDLEY 103 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~ 103 (227) +..+++...+++.+.+.+.. T Consensus 97 ~~~~~~~~~~~p~~~~~~~~ 116 (243) T 2g7l_A 97 LTSYTLVLFAHPQLARSALV 116 (243) T ss_dssp HHHHHHHHHHCHHHHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHHH T ss_conf 99999999989529999975 No 98 >2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A Probab=99.67 E-value=2.6e-15 Score=132.86 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=74.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) -||++||++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+++.+..... ....+.+....+ T Consensus 3 ltR~~Il~AA~~lf~~~G~~~~sv~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (207) T 2vke_A 3 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPA-AGESWQSFLRNN 81 (207) T ss_dssp CSHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCSCC-TTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHH T ss_conf 7699999999999997393527899999997919879988889889999999999998765320365-345648999999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999987788654 Q T0611 84 LESVFDGLWSYRFFHRD 100 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (227) ...+++....++..... T Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (207) T 2vke_A 82 AMSFRRALLRYRDGAKV 98 (207) T ss_dssp HHHHHHHHHTSTTHHHH T ss_pred HHHHHHHHHHCCCHHHH T ss_conf 99999999989329999 No 99 >3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V} Probab=99.67 E-value=4.4e-15 Score=131.17 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=88.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) +||++|++||.++|.++||+++||++||+++|||+|++|+||+||++|+.++++...+.+.... . ..... .. T Consensus 12 ~tr~~Il~aa~~l~~e~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~----~-~~~~~---~~ 83 (177) T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQG----R-DVTFE---EY 83 (177) T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHHHTSCC----C-CCCHH---HH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----H-HHHHH---HH T ss_conf 9999999999999987497417899999987908876520569867899999999899999987----8-75379---99 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998778865444441268899999999999999999999999-986598889938899999999999999988 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAK-LADAGIIQPQPEDLRSAMSLNVWLVITNWM 162 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~ 162 (227) +..++..+..++..+..+.. ...+.... .........+...+.. +...+. ...+.....++..+..+...|+ T Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (177) T 3kkc_A 84 LVHILKHFEQNQDSIATLLL--SDDPYFLL---RFRSELEHDVYPRLREEYITKVD--IPEDFLKQFLLSSFIETLKWWL 156 (177) T ss_dssp HHHHHHHHHHTGGGHHHHHH--TTCHHHHH---HHHHHHHHHTHHHHHHHHCCCCC--SCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH--CCCHHHHH---HHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999985999999985--48879999---99999999999999987442567--7389999999999999999998 Q ss_pred H Q ss_conf 7 Q T0611 163 A 163 (227) Q Consensus 163 ~ 163 (227) . T Consensus 157 ~ 157 (177) T 3kkc_A 157 H 157 (177) T ss_dssp H T ss_pred H T ss_conf 7 No 100 >3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} Probab=99.67 E-value=2.9e-15 Score=132.51 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=70.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||++|.++|.++||+++||++||+++|||+||+||||+||++|+.+++++..+.+...++ ...... . T Consensus 4 e~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sK~~Ll~~~~~~~~~~~~~~~~-----~~~~~~---~ 75 (170) T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMHAFRKMMEEFN-----PRSVEE---V 75 (170) T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHTCC-----CSSHHH---H T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---H T ss_conf 89999999999999872923067999999868394207650899999999999999999998764-----525999---9 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999987788654 Q T0611 84 LESVFDGLWSYRFFHRD 100 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (227) +..++.....++.++.. T Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (170) T 3egq_A 76 VDYGIGFIAERREFIEF 92 (170) T ss_dssp HHHHHHHHTSCHHHHHH T ss_pred HHHHHHHHHHCHHHHHH T ss_conf 99999999988799999 No 101 >2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=99.66 E-value=1.6e-15 Score=134.53 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=71.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||++|.++|.++||+++||++||+++|||+|++||||+||++|+.++++++.+.+...+.......+........ T Consensus 7 ~tr~~il~aA~~l~~~~G~~~~ti~~IA~~aGvs~~siy~~F~~K~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (180) T 2fd5_A 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALA 86 (180) T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTSCTTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999999999870955177999999868894248787689999999999999999999999763389831489999 Q ss_pred HHHHH Q ss_conf 99999 Q T0611 84 LESVF 88 (227) Q Consensus 84 ~~~~~ 88 (227) +...+ T Consensus 87 ~~~~~ 91 (180) T 2fd5_A 87 AAFYL 91 (180) T ss_dssp HHHHS T ss_pred HHHHH T ss_conf 99999 No 102 >2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} Probab=99.66 E-value=4.2e-15 Score=131.27 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=55.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 37799999999999987281036579999985778778999834489999999999999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEK 61 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~ 61 (227) -+||++||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.+++++... T Consensus 38 ~~tR~~Il~aA~~l~~~~G~~~~T~~~IA~~aGVs~~t~Y~~F~sK~~L~~a~~~~~~~ 96 (214) T 2guh_A 38 EQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFRAA 96 (214) T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999999999998493406799999994949869988828899999999999988 No 103 >2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=99.63 E-value=1.8e-15 Score=133.98 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=76.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221799877899999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDRPITLEDMTFY 83 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227) .||++||+||.++|.++| ++||++||+++|||+|+|||||+||++|+.+++++..+.+... ......+.+..... T Consensus 11 ~tR~~Il~AA~~lf~e~G--~~t~~~IA~~aGvs~~tlY~yF~sKe~L~~av~~~~~~~~~~~---~~~~~~~~~~~~~~ 85 (213) T 2g7g_A 11 LDRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREIDGS---AFERLPWDEAFSEW 85 (213) T ss_dssp CCHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCCCG---GGGTSCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHH T ss_conf 129999999999999829--8629999999686821699988798999999999999999875---01268877899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 99999999987788654444412688 Q T0611 84 LESVFDGLWSYRFFHRDLEYLLDSDP 109 (227) Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (227) +..+.+....++..++.+.......+ T Consensus 86 ~~~~~~~~~~~p~~~~~~~~~~~~~~ 111 (213) T 2g7g_A 86 ARSYRAAFSRHPTAIRLLATETVRDP 111 (213) T ss_dssp HHHHHHHHHTCGGGHHHHHTSCCCCH T ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCH T ss_conf 99999999988529999976456786 No 104 >3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} Probab=99.57 E-value=7e-15 Score=129.64 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYL 67 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~ 67 (227) .||++|+++|.++|.++||.++||++||+++|||+|+|||||+||++|+.+++++..+.+...+ T Consensus 14 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~lY~yF~sK~~Ll~a~~~~~~~~~~~~~ 77 (156) T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALDGRIFKMFIEHL 77 (156) T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHTTHHHHHHGGGS T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999987190207799999986888608988884999999999999999999875 No 105 >1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Probab=95.91 E-value=0.0047 Score=40.90 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=29.4 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999987281036579999985778778999834489 Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ++.|.+++. .| .|+.+||+..|||+.|||+||+.++ T Consensus 11 ~~~a~~l~~-~G---~~~~~IA~~~gVSr~TlYrylpa~~ 46 (52) T 1jko_C 11 QEQISRLLE-KG---HPRQQLAIIFGIGVSTLYRYFPASS 46 (52) T ss_dssp HHHHHHHHH-TT---CCHHHHHHTTSCCHHHHHHHSCTTC T ss_pred HHHHHHHHH-CC---CCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 999999998-78---9899999997979999999855125 No 106 >2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17 Probab=95.79 E-value=0.051 Score=33.19 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 9999999998728103657999998577877899983448999999 Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) .+-++-++....+|+.-|+.+||++.|||..|||.+= +|+.=|.+ T Consensus 33 ~llv~nEi~~~~~~~kkT~~eiAeEvGisr~tLy~Wk-tqnk~Fi~ 77 (155) T 2ao9_A 33 YLLVENELMESNNEEKRTQDEMANELGINRTTLWEWR-TKNQDFIA 77 (155) T ss_dssp HHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHH-HHCHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH-HCCHHHHH T ss_conf 9999887603675667579999999574699999886-04466999 No 107 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=94.30 E-value=0.026 Score=35.37 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=27.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH Q ss_conf 36579999985778778999834489999999999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227) ++||+|||+++|||++|+-+.+.+|..+=.+.-++ T Consensus 2 ~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~tr~r 36 (332) T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKK 36 (332) T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 73799999998969999999977959999999999 No 108 >1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A Probab=92.63 E-value=0.21 Score=28.55 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=37.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHCCHH Q ss_conf 79999999999998728103657999998577-8778999834489 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAI-SPGNLYYHFRNKS 49 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGv-s~gtlY~~F~sKe 49 (227) +..+||+.-.+...++||. =|+++||+.+|+ |++++++|...-+ T Consensus 7 rq~~il~~I~~~~~~~g~~-PS~~EIa~~~GikS~stv~~~l~~L~ 51 (202) T 1jhf_A 7 RQQEVFDLIRDHISQTGMP-PTRAEIAQRLGFRSPNAAEEHLKALA 51 (202) T ss_dssp HHHHHHHHHHHHHHHHSSC-CCHHHHHHHTTCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCC-CCHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 9999999999999982989-76999999829997378999875134 No 109 >1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 Probab=92.57 E-value=0.2 Score=28.75 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.2 Q ss_pred CCHHH-----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 97377-----999999999999872810365799999857787789998344 Q T0611 1 MTMKT-----RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 1 ~~~~T-----R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) |-||| +.+|| +++.+.. ..+|..+||+..|||+.|+|+.... T Consensus 13 ~~~k~~k~eR~~~Il----~~L~~~~-~~vt~~eLa~~l~VS~~TIrrDl~~ 59 (187) T 1j5y_A 13 MHMKTVRQERLKSIV----RILERSK-EPVSGAQLAEELSVSRQVIVQDIAY 59 (187) T ss_dssp --CHHHHHHHHHHHH----HHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHH----HHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 747030999999999----9999869-9776999999979799999999999 No 110 >1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A Probab=92.19 E-value=0.069 Score=32.18 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1 Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 65799999857787789998344899 Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +||.|||+++|||++|+-+.+.+|.+ T Consensus 1 vTi~dIA~~aGVS~sTVSrvLn~~~~ 26 (65) T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAK 26 (65) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTT T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 98999999989399999999779898 No 111 >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Probab=92.15 E-value=0.088 Score=31.39 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 03657999998577877899983448999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +.+|++|||+++|||++|+-+.+.+|+.+ T Consensus 8 ~~~Tl~diA~~agVS~~TVSr~Ln~~~~v 36 (366) T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYNRPEQL 36 (366) T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHHCGGGS T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 97629999999884999999985898999 No 112 >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Probab=91.71 E-value=0.078 Score=31.79 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=22.5 Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 6579999985778778999834489 Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) .||+|||+++|||++|+-+.+.++. T Consensus 1 aTi~dIA~~aGVS~~TVSrvLn~~~ 25 (340) T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTR 25 (340) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCS T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9689999998959999999968979 No 113 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=91.48 E-value=0.027 Score=35.24 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=26.8 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 03657999998577877899983448999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) ..+|+.|||+++|||++|+-+.+.++..+=.+ T Consensus 4 ~~~Ti~DIA~~aGVS~~TVSr~Ln~~~~vs~~ 35 (332) T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEK 35 (332) T ss_dssp -------------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 98779999999896999999996895999999 No 114 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=91.34 E-value=0.088 Score=31.38 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 0365799999857787789998344899 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ..+||+|||+++|||++|+-+.+.++.. T Consensus 9 k~vTikdIA~~aGVS~~TVSraLn~~~~ 36 (344) T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRNRGD 36 (344) T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTTCSC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 9976999999989599999999789799 No 115 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=91.22 E-value=0.03 Score=34.92 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=27.0 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 03657999998577877899983448999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) +.+|++|||+++|||++|+-+.+.++..+=.+ T Consensus 2 kk~Ti~dIA~~aGVS~~TVSraLn~~~~Vs~~ 33 (349) T 1jye_A 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAK 33 (349) T ss_dssp -------------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 97789999999885999999996795999999 No 116 >2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Probab=91.20 E-value=0.25 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=32.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 973779999999999998728103657999998577877899983448 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) +++..|++|++.+ +. +.+.++||++.+||+++++...+-. T Consensus 26 Ls~~lR~rIV~l~-----~~---G~s~r~iArr~~VS~~~V~kil~R~ 65 (159) T 2k27_A 26 LPEVVRQRIVDLA-----HQ---GVRPCDISRQLRVSHGCVSKILGRY 65 (159) T ss_dssp SCHHHHHHHHHHH-----HH---TCCHHHHHHHHTCCSHHHHHHHCCS T ss_pred CCHHHHHHHHHHH-----HC---CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9899999999999-----86---9999999999885888999999999 No 117 >2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Probab=90.77 E-value=0.39 Score=26.56 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=40.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 737799999999999987281036579999985778778999834489 Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) -|+.|..|...=.++-.++|+ |..++|+.+|||++++.++..+|- T Consensus 12 ~M~~r~~l~~~ir~~R~~~gl---Tq~elA~~~Gis~~~is~iE~G~~ 56 (83) T 2a6c_A 12 HMKMRSQLLIVLQEHLRNSGL---TQFKAAELLGVTQPRVSDLMRGKI 56 (83) T ss_dssp SHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHTSCHHHHHHHHTTCG T ss_pred HHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 479999999999999999699---889999998557635558862421 No 118 >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Probab=90.61 E-value=0.037 Score=34.23 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=24.5 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 3657999998577877899983448999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) ..||+|||+++|||++|+-+.+.++..+ T Consensus 8 r~Ti~dIA~~aGVS~~TVSr~Ln~~~~V 35 (348) T 3bil_A 8 RPTLKDVARQAGVSIATASRALADNPAV 35 (348) T ss_dssp ---------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 9739999999885999999997897999 No 119 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=90.61 E-value=0.037 Score=34.23 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=26.8 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 03657999998577877899983448999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) ..+||+|||+++|||++|+-+.+.++..+=.+ T Consensus 5 ~k~Ti~dIA~~aGVS~~TVSrvLn~~~~Vs~~ 36 (333) T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQ 36 (333) T ss_dssp -------------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 99859999999897999999997896999999 No 120 >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 Probab=90.45 E-value=0.3 Score=27.38 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 3779999999999998728103657999998577877899983448 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) -.||.+||..- . + +..|..+||+.+|||++++++|-..= T Consensus 14 ~~~R~~Il~~L----~-~--~~~~~~ela~~l~is~~~v~~HL~~L 52 (202) T 2p4w_A 14 NETRRRILFLL----T-K--RPYFVSELSRELGVGQKAVLEHLRIL 52 (202) T ss_dssp SHHHHHHHHHH----H-H--SCEEHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHH----H-C--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999----8-1--99889999999890998999999999 No 121 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=90.42 E-value=0.039 Score=34.04 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=25.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 03657999998577877899983448999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +-+||.|||+++|||++|+-+.+.+|..+ T Consensus 2 ~~~Ti~DIA~~aGVS~~TVSr~Ln~~~~V 30 (338) T 3dbi_A 2 SLTTMLEVAKRAGVSKATVSRVLSGNGYV 30 (338) T ss_dssp ----------------------------- T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 98889999999898899999996897999 No 122 >3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} Probab=89.86 E-value=0.37 Score=26.68 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=33.3 Q ss_pred HHHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 37799999999-999987281036579999985778778999834489 Q T0611 3 MKTRDKILLSS-LELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 3 ~~TR~~Il~aA-~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) |+|-..++..- .++-.++| .|..++|+.+|||+++++.+..+|. T Consensus 1 M~~~~~~i~~~l~~lr~~~g---~s~~~LA~~~Gvs~~tis~ie~g~~ 45 (78) T 3b7h_A 1 MKTDGEFVSEHLMELITQQN---LTINRVATLAGLNQSTVNAMFEGRS 45 (78) T ss_dssp CCCHHHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHCTTC T ss_pred CCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 98479999999999999949---9899999998929999999986998 No 123 >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Probab=89.81 E-value=0.047 Score=33.43 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=26.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 3657999998577877899983448999999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) ++|++|||+.+|||++|+-+.+.+|..+=.. T Consensus 4 ~vTikdIA~~aGVS~sTVSr~Ln~~~~Vs~~ 34 (339) T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQQVSEQ 34 (339) T ss_dssp ------------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 4459999999895999999995898999999 No 124 >1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Probab=89.49 E-value=0.43 Score=26.24 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 779999999999998728103657999998577877899983448 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) ..|.+|+... .. |.|.++||+..|+|+.|||++++.. T Consensus 10 ~~R~~I~~l~-----~~---G~s~~~IAk~lg~s~~tV~r~lk~~ 46 (141) T 1u78_A 10 TERAQLDVMK-----LL---NVSLHEMSRKISRSRHCIRVYLKDP 46 (141) T ss_dssp HHHHHHHHHH-----HT---TCCHHHHHHHHTCCHHHHHHHHHSG T ss_pred HHHHHHHHHH-----HC---CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999999-----97---9999999999895899999999970 No 125 >1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Probab=89.18 E-value=0.53 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=30.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 973779999999999998728103657999998577877899983 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) +++..|++|++++. .+.|.++||++.|||+++++... T Consensus 33 Ls~dlR~rIV~l~~--------~G~s~r~iArrf~VS~s~V~ki~ 69 (149) T 1k78_A 33 LPDVVRQRIVELAH--------QGVRPCDISRQLRVSHGCVSKIL 69 (149) T ss_dssp CCHHHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 97999999999999--------69989999998786889999999 No 126 >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D Probab=89.12 E-value=0.67 Score=24.75 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=36.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 973779999999999998728103657999998577877899983 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) |+-.+-|-.|.+-..+-.++| .++..+||+.+|||++++.... T Consensus 1 m~t~~~EdYL~~I~~l~~~~~--~v~~~~iA~~L~vs~~svt~~l 43 (142) T 1on2_A 1 MTTPSMEMYIEQIYMLIEEKG--YARVSDIAEALAVHPSSVTKMV 43 (142) T ss_dssp -CCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHTSCHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHH T ss_conf 989609999999999996389--9769999999698878999999 No 127 >1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Probab=88.52 E-value=0.72 Score=24.54 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=30.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 973779999999999998728103657999998577877899983 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) +++.+|++|++.+ + .+.+.++||+..+||+++++... T Consensus 18 Ls~~~R~rIv~l~-----~---~G~s~~~Iar~l~Vs~~~V~kil 54 (128) T 1pdn_C 18 LPNNIRLKIVEMA-----A---DGIRPCVISRQLRVSHGCVSKIL 54 (128) T ss_dssp CCHHHHHHHHHHH-----H---TTCCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHHHH-----H---CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9899999999999-----8---69999999998896899999999 No 128 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=88.46 E-value=0.067 Score=32.28 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=27.6 Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 728103657999998577877899983448999 Q T0611 19 DKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 19 e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) ..|=+.+||+|||+++|||++|+-+...+|..+ T Consensus 7 ~p~~k~vTi~diA~~aGVS~sTVSrvLn~~~~V 39 (355) T 3e3m_A 7 KPGHRPVTMRDVAKAAGVSRMTVSRALKKDSPI 39 (355) T ss_dssp --------------------------------- T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999999769999999886999999996898999 No 129 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Probab=88.08 E-value=0.55 Score=25.39 Aligned_cols=37 Identities=35% Similarity=0.538 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 779999999999998728103657999998577877899983448 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) -||-+||. ++ ..| .+..+|++..|+|++++.||+.-= T Consensus 31 p~Rl~IL~----~L-~~~---~~~~el~~~l~is~stvs~HL~~L 67 (96) T 1y0u_A 31 PVRRKILR----ML-DKG---RSEEEIMQTLSLSKKQLDYHLKVL 67 (96) T ss_dssp HHHHHHHH----HH-HTT---CCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHH----HH-CCC---CHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999----84-454---178899999893988999999999 No 130 >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A Probab=87.75 E-value=0.43 Score=26.20 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 779999999999998728103657999998577877899983448 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) .||.+||..- . .| ..|..+||+++|+|++++++|-+.- T Consensus 20 ~~R~~Il~~L----~-~~--~~t~~ela~~l~~s~~~v~~hL~~L 57 (192) T 1uly_A 20 DTRRKILKLL----R-NK--EMTISQLSEILGKTPQTIYHHIEKL 57 (192) T ss_dssp HHHHHHHHHH----T-TC--CBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHH----H-HC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999999----8-29--9689999999890999999999999 No 131 >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Probab=87.38 E-value=0.97 Score=23.56 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHCCC---------------CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 7799999999999987281---------------0365799999857787789998344 Q T0611 4 KTRDKILLSSLELFNDKGE---------------RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~---------------~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) +.+..|++.--+++...|+ ...|+++||+..|+|+++++..-.. T Consensus 6 ~~~~~~~e~~~~~~~~~Gl~~~~~~v~~~L~~~~~p~t~~eLa~~l~isks~vs~~l~~ 64 (152) T 1ku9_A 6 EAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKK 64 (152) T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999999981979999999999997698969999997848665149999999 No 132 >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 Probab=87.00 E-value=0.61 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 37799999999999987281036579999985778778999834489 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) |++=+|.++. +++|++.+ ...|+.+||++.|++|+|+|++..+=. T Consensus 4 ~~sl~ral~I-Le~la~~~-~~~~l~eia~~lgl~~st~~RlL~tL~ 48 (249) T 1mkm_A 4 MNTLKKAFEI-LDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVVLE 48 (249) T ss_dssp CTTHHHHHHH-HHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CCHHHHHHHH-HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 6499999999-99997289-998999999987919999999999999 No 133 >2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} Probab=86.50 E-value=1 Score=23.40 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999999999872810365799999857787789998344899 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ..++-.-++.+.++ .+.|-.++|+.+|||++++.+|..++.. T Consensus 7 k~~f~~~Lk~lr~~--~g~tq~elA~~lgvs~~~i~~~E~G~~~ 48 (94) T 2kpj_A 7 KAIFSENLNSYIAK--SEKTQLEIAKSIGVSPQTFNTWCKGIAI 48 (94) T ss_dssp HHHHHHHHHHHHTT--SSSCHHHHHHHHTCCHHHHHHHHTTSCC T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHHHHHHCCHH T ss_conf 99999999999999--0999999999885300567887601000 No 134 >1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A Probab=86.43 E-value=0.58 Score=25.24 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 9999999999998728103657999998577877899983448 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) ....++..++.+.++=-+..|+++||+.+|+|+..+++.|+.- T Consensus 9 ~~~~i~~i~~~i~~n~~~~~sl~~la~~~~~S~~~l~r~Fk~~ 51 (129) T 1bl0_A 9 DAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129) T ss_dssp CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 5999999999999834899999999999891999999999999 No 135 >2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} Probab=86.42 E-value=1.6 Score=22.03 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 999999999987281-03657999998577877899983448999 Q T0611 8 KILLSSLELFNDKGE-RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 8 ~Il~aA~~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) ..+..+.+.+.++=. ...|++++|+.+|+|+.++.+.|+..-++ T Consensus 3 ~~v~~~~~~I~~~~~~~~~sl~~lA~~~~~s~~~l~r~f~~~~g~ 47 (107) T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGI 47 (107) T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSS T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 999999999997568999799999999892999999999999892 No 136 >3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli} Probab=86.02 E-value=0.87 Score=23.92 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=43.8 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHH Q ss_conf 9999999998728103657999998577877899983448999-999999999999998752217998778999 Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI-IYEIFQEYEKLVDYYLDIPEDRPITLEDMT 81 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L-l~av~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227) +++.+.+.+.++=-+..|+.+||+.+|||+.+|.+.|+. .++ +...+.. -++.........+..++.++. T Consensus 8 ~~~rv~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~g~s~~~~i~~--~Rl~~A~~lL~~~~~~i~~IA 78 (120) T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE-EETSYSQLLTE--CRMQRALQLIVIHGFSIKRVA 78 (120) T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH-TTCCHHHHHHH--HHHHHHHHHHTSTTCCHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH-CCCCHHHHHHH--HHHHHHHHHHCCCCCCHHHHH T ss_conf 999999999867689999999999999299999999998-19999999999--999999987036778799999 No 137 >2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} Probab=85.48 E-value=1.5 Score=22.14 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=38.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCC---CC-CHHHHHHHHCCCHHHHHH Q ss_conf 97377999999999999872810---36-579999985778778999 Q T0611 1 MTMKTRDKILLSSLELFNDKGER---NI-TTNHIAAHLAISPGNLYY 43 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~---~~-t~~~IA~~aGvs~gtlY~ 43 (227) |++|+.++|.+.=.+.+....|. .. |-+++|++.|||++++-. T Consensus 1 ~s~~~~e~v~~~i~~~I~~g~l~pG~~LpsE~eLa~~~gVSRt~VRE 47 (239) T 2di3_A 1 MSVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLRE 47 (239) T ss_dssp -CHHHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHH T ss_conf 99749999999999999859999819991099999998959999999 No 138 >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Probab=85.19 E-value=1.2 Score=22.88 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 77999999999999872810365799999857787789998344 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .||-+||.. +. + ...++.+||+..|+|.+++.+|.+- T Consensus 23 ~~Rl~Il~~----L~-~--~~~~v~ela~~l~is~~tvS~HL~~ 59 (98) T 3jth_A 23 ERRLQILCM----LH-N--QELSVGELCAKLQLSQSALSQHLAW 59 (98) T ss_dssp HHHHHHHHH----TT-T--SCEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHH----HH-C--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999----98-1--9967999999989298899999999 No 139 >2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Probab=85.09 E-value=1.1 Score=23.07 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 377999999999999872810365799999857787789998344 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) =.||-+||..- .+ ...|+.+||+..|+|.+++.+|.+- T Consensus 20 dp~R~~Il~~L----~~---~~~~v~eLa~~l~~s~~~vS~HL~~ 57 (114) T 2oqg_A 20 DETRWEILTEL----GR---ADQSASSLATRLPVSRQAIAKHLNA 57 (114) T ss_dssp CHHHHHHHHHH----HH---SCBCHHHHHHHSSSCHHHHHHHHHH T ss_pred CHHHHHHHHHH----HC---CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999----81---9958999999989199999999999 No 140 >2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} Probab=84.92 E-value=0.52 Score=25.56 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7799999999999987281036579999985778778999834 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .||-+||..-. + | ..++.+|++..|+|++++.+|.+ T Consensus 21 p~Rl~Il~~L~----~-~--~~~v~ela~~l~is~stvS~HL~ 56 (118) T 2jsc_A 21 PTRCRILVALL----D-G--VCYPGQLAAHLGLTRSNVSNHLS 56 (118) T ss_dssp HHHHHHHHHHH----T-T--CCSTTTHHHHHSSCHHHHHHHHH T ss_pred HHHHHHHHHHH----C-C--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999998----2-9--93899999998919999999999 No 141 >2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Probab=84.73 E-value=0.86 Score=23.96 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=30.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 973779999999999998728103657999998577877899983448 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) |+|++.+. |+ ++....|+. |-+++|+.+|||++++..+..++ T Consensus 3 ~~~~~ee~-l~---Rl~e~~g~~--sq~eLA~~lgvs~~tis~~~~~~ 44 (189) T 2fjr_A 3 LGWSNVDV-LD---RICEAYGFS--QKIQLANHFDIASSSLSNRYTRG 44 (189) T ss_dssp TTCCHHHH-HH---HHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSS T ss_pred CCCCHHHH-HH---HHHHHHCCC--CHHHHHHHHCCCHHHHHHHHHCC T ss_conf 56678999-99---999984987--79999999796999999999579 No 142 >1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A Probab=84.73 E-value=1.5 Score=22.20 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.2 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 81036579999985778778999834489 Q T0611 21 GERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 21 G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) --...|+++||+++|+|+..|.+.|+.-- T Consensus 90 ~~~~~sl~~lA~~~g~S~~~l~R~Fk~~~ 118 (133) T 1u8b_A 90 QETPVTLEALADQVAMSPFHLHRLFKATT 118 (133) T ss_dssp SSSCCCHHHHHHHHTSCHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 36999999995471999899999999998 No 143 >2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 Probab=84.58 E-value=1.7 Score=21.66 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 3779999999999998728103657999998577877899983448999 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) |..+..|=+.=.++-.++| .|..++|+.+|||+.++++|-.++... T Consensus 5 ~~~~~~~g~~ir~~R~~~g---ltq~~lA~~~gvs~~~i~~~E~g~~~p 50 (77) T 2b5a_A 5 IEIKRKFGRTLKKIRTQKG---VSQEELADLAGLHRTYISEVERGDRNI 50 (77) T ss_dssp HHHHHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTCSCC T ss_pred HHHHHHHHHHHHHHHHHHC---CCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 8999999999999999809---999999989697999999998599999 No 144 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=84.43 E-value=0.15 Score=29.71 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.6 Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 657999998577877899983448999 Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +||+|||+++|||++|+-+-+.++..+ T Consensus 3 ati~diA~~agVS~~TVsraLn~~~~V 29 (330) T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYV 29 (330) T ss_dssp --------------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 989999999894999999996896999 No 145 >2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} Probab=84.17 E-value=1.2 Score=22.91 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 79999999999998728103657999998577877899983 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) .|++++.-..+--.+.|-.+.|+.+||.++|||..+||... T Consensus 11 FK~~AV~lv~e~~~~~~s~g~~~~~VA~~LGI~~~tL~~Wv 51 (108) T 2rn7_A 11 VRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108) T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999998543456565559999988299999999999 No 146 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=83.72 E-value=2 Score=21.17 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=31.5 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 999987281036579999985778778999834489999 Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) ...|.-+-+.+.|..+||+..|||+++++.+..-=...+ T Consensus 31 r~v~~l~~~~~ls~~EIA~~lgiS~~~V~~~l~Ra~~~L 69 (113) T 1xsv_A 31 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113) T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999999998286599999998969999999999999999 No 147 >3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Probab=83.63 E-value=1.4 Score=22.44 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=32.4 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999999872810365799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +.-+.+.+.++--...|+.+||+.+|||+..|.+.|+..-+ T Consensus 4 v~rv~~~i~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~~g 44 (108) T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRG 44 (108) T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTS T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 99999999874489999999999989199999999999989 No 148 >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Probab=83.62 E-value=1.6 Score=21.97 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=28.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 37799999999999987281036579999985778778999834 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) =.||-+|+..- .+ | ..++.+|++..|+|.+++.+|.+ T Consensus 25 ~p~Rl~Il~~L----~~-~--~~~v~ela~~l~~s~stvS~HL~ 61 (106) T 1r1u_A 25 DYNRIRIMELL----SV-S--EASVGHISHQLNLSQSNVSHQLK 61 (106) T ss_dssp SHHHHHHHHHH----HH-C--CBCHHHHHHHHTCCHHHHHHHHH T ss_pred CHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999----83-9--94699999887658668999999 No 149 >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Probab=82.88 E-value=0.63 Score=24.98 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7799999999999987281036579999985778778999834 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .||.+||..- .+ | ..|+.+||+..|+|.+++.+|.+ T Consensus 18 p~R~~Il~~L----~~-~--~~~v~ela~~l~~s~~~vs~HL~ 53 (118) T 3f6o_A 18 PTRRAVLGRL----SR-G--PATVSELAKPFDMALPSFMKHIH 53 (118) T ss_dssp HHHHHHHHHH----HT-C--CEEHHHHHTTCCSCHHHHHHHHH T ss_pred HHHHHHHHHH----HH-C--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999----80-9--97777779886969999999998 No 150 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=82.13 E-value=1.5 Score=22.16 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 7999999999999872810365799999857787789998344 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) ||-+|+. .+.++ ...|+.+||+..|+|++++++|-.. T Consensus 17 ~r~~Il~----~L~~~--~~~~~~eLa~~l~is~~~vs~~l~~ 53 (100) T 1ub9_A 17 VRLGIMI----FLLPR--RKAPFSQIQKVLDLTPGNLDSHIRV 53 (100) T ss_dssp HHHHHHH----HHHHH--SEEEHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHH----HHCCC--CCCCHHHHHHHHHHCCCCCHHHHHH T ss_conf 9999999----97267--8961999999885268744199998 No 151 >3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} Probab=82.08 E-value=1.9 Score=21.43 Aligned_cols=38 Identities=16% Similarity=0.014 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 99999999987281036579999985778778999834 Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +++...+.+.++--...|+++||+.+|+|+..+.+.|+ T Consensus 170 ~~~~i~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fK 207 (276) T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276) T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999985738999999999997979999999999 No 152 >3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis} Probab=82.07 E-value=1.9 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=18.0 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9998728103657999998577877899983 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) ++|.-+-|.+.|.++||+.+|+|.+++..+. T Consensus 44 ~vl~l~~~~~~s~~EIA~~lgis~~~v~~~~ 74 (92) T 3hug_A 44 AVIQRSYYRGWSTAQIATDLGIAEGTVKSRL 74 (92) T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999949999999999896999999999 No 153 >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} Probab=81.69 E-value=0.51 Score=25.68 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=28.9 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 99998728103657999998577877899983448999 Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +++|.+.+ ...|+.+||+++|++|+|+|++-.+=.+. T Consensus 27 L~~~~~~~-~~l~l~eia~~lgl~kst~~RlL~tL~~~ 63 (265) T 2ia2_A 27 IRCFDHRN-QRRTLSDVARATDLTRATARRFLLTLVEL 63 (265) T ss_dssp HHTCCSSC-SSEEHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 99997379-99799999999794999999999999975 No 154 >3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Probab=81.64 E-value=1.7 Score=21.74 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999999987281-0365799999857787789998344899 Q T0611 9 ILLSSLELFNDKGE-RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 9 Il~aA~~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +.+.-.+++.++.. .+.|..++|+++|||++++.++-.++-. T Consensus 14 ~~~rlk~~~~~~r~~~gltq~~LA~~lGis~~~is~~e~g~~~ 56 (236) T 3bdn_A 14 DARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINA 56 (236) T ss_dssp HHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSC T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 9999999999999884999999999979799999999717650 No 155 >3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} Probab=81.58 E-value=1.2 Score=22.82 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7799999999999987281036579999985778778999834 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .||-+||..-. ++ .+.+..+|++..|+|++++.+|.+ T Consensus 24 p~Rl~Il~~L~----~~--~~~~~~ela~~l~ls~stvS~HL~ 60 (99) T 3cuo_A 24 PKRLLILCMLS----GS--PGTSAGELTRITGLSASATSQHLA 60 (99) T ss_dssp HHHHHHHHHHT----TC--CSEEHHHHHHHHCCCHHHHHHHHH T ss_pred HHHHHHHHHHH----CC--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999997----69--994199999998929878999999 No 156 >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} Probab=81.23 E-value=1.5 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7799999999999987281036579999985778778999834 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .||-+|+..-. +. ...++.+|++..|+|.+++.+|.+ T Consensus 27 p~Rl~Il~~L~----~~--~~~~v~ela~~l~~s~stvS~HL~ 63 (99) T 2zkz_A 27 PMRLKIVNELY----KH--KALNVTQIIQILKLPQSTVSQHLC 63 (99) T ss_dssp HHHHHHHHHHH----HH--SCEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHH----HC--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999996----47--990599999998858768999999 No 157 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Probab=81.19 E-value=0.95 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 036579999985778778999834 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +|.|+.+||++.|||+.|||..-. T Consensus 22 ~G~s~~~vA~~lGIs~~tl~~W~r 45 (97) T 2jn6_A 22 DGASLQQIANDLGINRVTLKNWII 45 (97) T ss_dssp GGSCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCCCCCHHHHH T ss_conf 998599999997999350129999 No 158 >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A Probab=81.01 E-value=1.6 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=11.9 Q ss_pred CCHHHHHHHHCCCHHHHHHHH Q ss_conf 657999998577877899983 Q T0611 25 ITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F 45 (227) .++.+||+..|+|++++.+|. T Consensus 60 ~~v~eLa~~l~ls~stvS~HL 80 (122) T 1r1t_A 60 LCVGDLAQAIGVSESAVSHQL 80 (122) T ss_dssp BCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 569999999891988999999 No 159 >3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} Probab=80.84 E-value=1.6 Score=21.98 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 3657999998577877899983448999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) ..|+.+||+.+|+|+..|.+.|+.--++ T Consensus 19 ~l~l~~lA~~~~~s~~~l~r~fk~~~g~ 46 (103) T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103) T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSS T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 9899999999891999999999998891 No 160 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Probab=80.76 E-value=1.8 Score=21.61 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=27.8 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 3657999998577877899983448999999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) |-|..+||++.||+..|||..-+.|+.+... T Consensus 38 G~s~~~vAre~gi~~sTl~~wvK~~~ki~~~ 68 (87) T 2elh_A 38 GESKASVARDIGVPESTLRGWCKNEDKLRFM 68 (87) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9989999999897887999999979999988 No 161 >1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Probab=80.75 E-value=1.7 Score=21.68 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=6.0 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 999999998659888 Q T0611 126 INRIFAKLADAGIIQ 140 (227) Q Consensus 126 ~~~~l~~~i~~G~l~ 140 (227) +...++.+.+.|.+. T Consensus 73 vS~HL~~L~~~GlV~ 87 (122) T 1u2w_A 73 ASHHLRTLYKQGVVN 87 (122) T ss_dssp HHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHCCEEE T ss_conf 999999999889258 No 162 >1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2 Probab=80.17 E-value=1 Score=23.48 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999999987281036579999985778778999834489 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ..|++-.++-+.++=-...|+++||+.+|+|+.+|.+.|+.-- T Consensus 2 ~~~i~~~~~~i~~~~~~~~~l~~la~~~~~s~~~l~r~f~~~~ 44 (292) T 1d5y_A 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT 44 (292) T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 6899999999997058999999999998939999999999988 No 163 >2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} SCOP: a.4.1.2 PDB: 2ezl_A Probab=80.10 E-value=1.8 Score=21.54 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHC Q ss_conf 99999999999987281036-579999985778778999834 Q T0611 6 RDKILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~ 46 (227) |-.++.+-..| .+.|..-. -+..+|.+-|||++|||++|. T Consensus 35 rL~~l~~v~~L-~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~ 75 (99) T 2ezk_A 35 WLPAVQAADEM-LNQGISTKTAFATVAGHYQVSASTLRDKYY 75 (99) T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHHHHSCSCHHHHHHHHH T ss_pred HHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999-986982899999999996988999999999 No 164 >1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Probab=80.10 E-value=0.89 Score=23.84 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.1 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 103657999998577877899983448 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) ..|.|..+||..+|+|.+|+..|..+- T Consensus 24 ~~G~s~~eIA~~l~is~~TV~~~~~~i 50 (74) T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNA 50 (74) T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 927999999999689877999999999 No 165 >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Probab=79.54 E-value=0.71 Score=24.56 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=10.3 Q ss_pred CCHHHHHHHHCCCHHHHHHHH Q ss_conf 657999998577877899983 Q T0611 25 ITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F 45 (227) .|+.+|+++.|+|++++.+|. T Consensus 72 ~tv~eLa~~lgisqstvS~HL 92 (151) T 3f6v_A 72 QTVNNLAAHFPASRSAISQHL 92 (151) T ss_dssp EEHHHHHTTSSSCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 179999999887877899987 No 166 >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 Probab=78.82 E-value=1.6 Score=21.96 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 973779999999999998728----103657999998577877899983448 Q T0611 1 MTMKTRDKILLSSLELFNDKG----ERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G----~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) |+|.+.++...+ +..+.+.| ...+|..+||+.+|+|++++.++-..- T Consensus 1 Msld~s~q~~~a-L~~L~~~~~~~~~~~it~~eLa~~l~is~~tvsr~l~~L 51 (230) T 3cta_A 1 MSLETDDQYYRA-IKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDL 51 (230) T ss_dssp ------CHHHHH-HHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCCCHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 997666999999-999998452057998689999999888887999999999 No 167 >3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A Probab=78.41 E-value=2.5 Score=20.45 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHH Q ss_conf 99999999999872810365799999857787789998344899999 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIY 53 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~ 53 (227) +.|=+.=..+-.++ +.|..++|+++|||++++..+-.++..+=. T Consensus 27 ~~iG~~Lr~~R~~~---glsq~~lA~~~gis~~~is~~E~G~~~ps~ 70 (117) T 3f52_A 27 EALGAALRSFRADK---GVTLRELAEASRVSPGYLSELERGRKEVSS 70 (117) T ss_dssp HHHHHHHHHHHHHH---TCCHHHHHHHTTSCHHHHHHHHTTSSCCCH T ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99999999999995---989999998860307789999753032769 No 168 >1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Probab=78.20 E-value=1.4 Score=22.30 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.3 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 99987281036579999985778778999834 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) ..|.-.=|.+.|..+||+.+|+|.++++.+.. T Consensus 29 ~vi~L~~~~~ls~~EIA~~lgis~~~V~~~l~ 60 (113) T 1s7o_A 29 NYIELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113) T ss_dssp HHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999731299999998979999999999 No 169 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Probab=77.56 E-value=2.2 Score=20.82 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9999999999998728103657999998577877899983 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) -+.++=..+--|.+.|..--|+..||+++|+|+.+++.+- T Consensus 33 ~e~~vll~l~~~~~~g~~~PS~~~La~~~g~s~~tv~~~l 72 (135) T 2v79_A 33 TELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRL 72 (135) T ss_dssp HHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999998759879899999989695999999999 No 170 >2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} Probab=77.51 E-value=1.2 Score=22.91 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHCCCCC Q ss_conf 9999999998728103 Q T0611 9 ILLSSLELFNDKGERN 24 (227) Q Consensus 9 Il~aA~~lf~e~G~~~ 24 (227) |.++...+....||+. T Consensus 23 l~~~l~~~~~~~Gf~~ 38 (236) T 2q0o_A 23 IKIALRSFAHSCGYDR 38 (236) T ss_dssp HHHHHHHHHHHHTCCE T ss_pred HHHHHHHHHHHCCCCE T ss_conf 9999999999839887 No 171 >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50 Probab=77.34 E-value=1.7 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=22.6 Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 872810365799999857787789998344 Q T0611 18 NDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 18 ~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) ..+| ..|+.+||+.+|+++++++++-.. T Consensus 32 ~~~~--~lt~~ela~~l~i~~~tv~~~l~~ 59 (109) T 2d1h_A 32 EIEK--PITSEELADIFKLSKTTVENSLKK 59 (109) T ss_dssp HHCS--CEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HCCC--CCCHHHHHHHHCCCCCHHHHHHHH T ss_conf 8496--989999999978872349999999 No 172 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A Probab=77.04 E-value=2.6 Score=20.35 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999999999872810365799999857787789998344899 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -.+||. ++.+.| ..|+.+||+++|+|++++++..+.-++ T Consensus 9 D~~Il~----~L~~d~--R~s~~~ia~~lgls~~tv~~Ri~~L~~ 47 (150) T 2w25_A 9 DRILVR----ELAADG--RATLSELATRAGLSVSAVQSRVRRLES 47 (150) T ss_dssp HHHHHH----HHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999----999848--999999999989099999999999840 No 173 >3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Probab=76.97 E-value=1.2 Score=22.74 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=20.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 0365799999857787789998344 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .+.|..+||+++++|..|+-+|..+ T Consensus 41 ~G~s~~eIA~~L~iS~~TV~~~~~~ 65 (95) T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSR 65 (95) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2799999998979699999999999 No 174 >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 Probab=76.85 E-value=2.7 Score=20.28 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=26.1 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 9998728103657999998577877899983448 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) +++.+.| ..|..+||+++|+|++|+.++.+.- T Consensus 12 ~~L~~n~--R~s~~eia~~~g~s~~tv~~Ri~rL 43 (144) T 2cfx_A 12 EELKKDS--RLSMRELGRKIKLSPPSVTERVRQL 43 (144) T ss_dssp HHHHHCS--CCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999848--9999999999885888999999987 No 175 >1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 Probab=76.37 E-value=1.4 Score=22.29 Aligned_cols=31 Identities=6% Similarity=0.073 Sum_probs=26.1 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 1036579999985778778999834489999 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) -.+.|..++|+.+|||+++++++-.++...= T Consensus 24 ~~gltq~~lA~~~gis~~~i~~~E~g~~~ps 54 (74) T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVERGQRNVS 54 (74) T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCSCCB T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 8099999999898969999999987998999 No 176 >1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A Probab=76.35 E-value=1.5 Score=22.16 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=23.8 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 036579999985778778999834489 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) .+.|..++|+.+|||+++++.+..+|. T Consensus 13 ~~lsq~ela~~~gvs~~ti~~~e~g~~ 39 (69) T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENGKT 39 (69) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTSC T ss_pred CCCCHHHHHHHCCCCHHHHHHHHCCCC T ss_conf 499999997850989999999987999 No 177 >2v4j_C Sulfite reductase, dissimilatory-type subunit gamma; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.203.1.1 Probab=76.20 E-value=3.4 Score=19.45 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999999999872810365799999857787789998344899 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) .-.||+..++-|.++|..- ++|.+.+..|.+.+.||.-|++.-. T Consensus 46 Hw~vI~~lR~~y~~~~~~P-~~R~l~k~~~~~~~~L~~LFp~~Pa 89 (105) T 2v4j_C 46 HQKIIDFLQDYYKKNGIAP-MVRILSKNTGFKLKEVYELFPSGPG 89 (105) T ss_dssp HHHHHHHHHHHHHHHSSCC-CHHHHHHHHCCCHHHHHHHSTTHHH T ss_pred HHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHCCCCHH T ss_conf 9999999999999958997-1999999855217799998699999 No 178 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 Probab=76.03 E-value=2.9 Score=20.01 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=25.6 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 9998728103657999998577877899983448 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) +++.+.| ..|..+||+.+|+|.+++.+..+.- T Consensus 14 ~~L~~n~--R~s~~~iA~~lg~S~~tv~~Ri~~L 45 (151) T 2cyy_A 14 KILQNDG--KAPLREISKITGLAESTIHERIRKL 45 (151) T ss_dssp HHHHHCT--TCCHHHHHHHHCSCHHHHHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999748--9999999999892989999999999 No 179 >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Probab=75.97 E-value=3.3 Score=19.55 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 9999999999987281036579999985778778999834 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +-++=..+--|.++|..--|++.||+++|+|+.+++.+-. T Consensus 34 e~~vll~l~~~~~~~~~~PS~~~LA~~~g~s~~~v~~~l~ 73 (128) T 2vn2_A 34 ELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVR 73 (128) T ss_dssp HHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8999999999986699999999999897929999999999 No 180 >3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} Probab=75.79 E-value=1.5 Score=22.21 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 1036579999985778778999834 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) ....|+++||+++|||+.|+.+..+ T Consensus 33 ~~~~si~~lA~~~~vS~aTv~Rf~k 57 (107) T 3iwf_A 33 VVNMTSQEIANQLETSSTSIIRLSK 57 (107) T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9776499999896989889999999 No 181 >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} Probab=75.68 E-value=3.5 Score=19.36 Aligned_cols=47 Identities=4% Similarity=0.079 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHHHHHHHH Q ss_conf 999999999998728103657999998577-877899983448999999999 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAI-SPGNLYYHFRNKSDIIYEIFQ 57 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGv-s~gtlY~~F~sKe~Ll~av~~ 57 (227) +.+.+...+.+. .|-|+++|++..|| |..|||.+-...+++...+.. T Consensus 18 ~e~~e~I~~~i~----~G~sl~~i~~~~gvps~sTl~rWl~~~~ef~e~y~~ 65 (143) T 3hef_A 18 PEVADDICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAK 65 (143) T ss_dssp HHHHHHHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHTTTCHHHHHHHHH T ss_pred HHHHHHHHHHHH----CCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHH T ss_conf 999999999998----798799998727999689999999817899999999 No 182 >2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} Probab=75.59 E-value=2.3 Score=20.72 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=28.9 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH-CCHHHH Q ss_conf 999998728103657999998577877899983-448999 Q T0611 13 SLELFNDKGERNITTNHIAAHLAISPGNLYYHF-RNKSDI 51 (227) Q Consensus 13 A~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F-~sKe~L 51 (227) -.++|.-.=+++.|..+||+..|+|.+|+-.+. ..+..| T Consensus 20 ~r~v~~l~~~~g~s~~EIA~~l~is~~tvk~~l~rar~~L 59 (70) T 2o8x_A 20 QREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70) T ss_dssp HHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 9999998999099999999998979999999999999999 No 183 >2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* Probab=75.38 E-value=1.4 Score=22.33 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=28.2 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHH Q ss_conf 281036579999985778778999834489999999 Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEI 55 (227) Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av 55 (227) +--.+.|..++|+.+|||+++|..+-.++...=... T Consensus 21 R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~ 56 (88) T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTT 56 (88) T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHH T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHH T ss_conf 998599999997863998999999987999999999 No 184 >2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Probab=75.07 E-value=3 Score=19.85 Aligned_cols=32 Identities=9% Similarity=0.314 Sum_probs=25.3 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 9998728103657999998577877899983448 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) +++.+. ...|.++||++.|+|++++.+..+.- T Consensus 24 ~~L~~d--~R~s~~eIA~~lglS~~tV~~Ri~rL 55 (171) T 2ia0_A 24 RLLKKD--ARLTISELSEQLKKPESTIHFRIKKL 55 (171) T ss_dssp HHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999984--89999999999890999999999999 No 185 >2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Probab=74.93 E-value=1.2 Score=22.74 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.0 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 0365799999857787789998344 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .|.|..+||+++|+|..|+-.|-.+ T Consensus 12 ~G~s~~eIA~~l~iS~~TV~~~~~~ 36 (61) T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMN 36 (61) T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2799999998969999999999999 No 186 >1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} Probab=74.79 E-value=1.5 Score=22.18 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.8 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 10365799999857787789998344 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) -.|.|..+||+.+|+|..|+..|..+ T Consensus 29 ~~G~s~~eIA~~L~iS~~TV~~h~~~ 54 (79) T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRAN 54 (79) T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHH T ss_pred HHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 93699999988989789999999999 No 187 >1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=74.50 E-value=1.7 Score=21.74 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=26.8 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 9998728103657999998577877899983448999 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) ++-.++ +.|..++|+.+|||++++..+..++... T Consensus 12 ~lR~~~---gltq~~lA~~~gis~~~i~~~e~g~~~p 45 (76) T 1adr_A 12 ARRKKL---KIRQAALGKMVGVSNVAISQWERSETEP 45 (76) T ss_dssp HHHHHH---TCCHHHHHHHHTSCHHHHHHHHTTSSCC T ss_pred HHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999991---9999999999894999999999699899 No 188 >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} Probab=74.49 E-value=1 Score=23.42 Aligned_cols=39 Identities=5% Similarity=0.105 Sum_probs=28.7 Q ss_pred HHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999---987281036579999985778778999834489 Q T0611 10 LLSSLEL---FNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 10 l~aA~~l---f~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ++-++++ |++.+ .+.|+.+||+++|++|+|+|++-.+-. T Consensus 22 l~r~l~ILe~l~~~~-~~lsl~eia~~lgl~kst~~RlL~tL~ 63 (260) T 2o0y_A 22 VTRVIDLLELFDAAH-PTRSLKELVEGTKLPKTTVVRLVATMC 63 (260) T ss_dssp HHHHHHHHTTCBTTB-SSBCHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999998479-998999999997919899999999999 No 189 >2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation, two-component regulatory system; NMR {Bacillus subtilis} Probab=74.36 E-value=1.6 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 0365799999857787789998344 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .|.|..+||+.+|+|..|+.+|..+ T Consensus 26 ~G~t~~eIA~~l~iS~~TV~~~~~~ 50 (73) T 2krf_A 26 KGFTNQEIADALHLSKRSIEYSLTS 50 (73) T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 4899999987868887899999999 No 190 >1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* Probab=74.25 E-value=1.8 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=23.3 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 036579999985778778999834489 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) .+.|..++|+.+|||++++.++..++. T Consensus 15 ~glsq~~lA~~~Gis~~~is~~e~g~~ 41 (71) T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAGVT 41 (71) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTCC T ss_pred CCCCHHHHHHHHHCCHHHHHHHHCCCC T ss_conf 499999999997158999999987999 No 191 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=74.00 E-value=3.4 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.1 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 9987281036579999985778778999834 Q T0611 16 LFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 16 lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) ++.++| ..|+.+||+.+|++++++|..-. T Consensus 28 ~L~~~~--~~t~~eia~~~~~~~~~v~~~l~ 56 (109) T 1sfx_A 28 LLLERG--GMRVSEIARELDLSARFVRDRLK 56 (109) T ss_dssp HHHHHC--CBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCC--CCCHHHHHHHHCCCCCHHHHHHH T ss_conf 998048--88799999997567018999999 No 192 >3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Probab=73.73 E-value=1.8 Score=21.56 Aligned_cols=30 Identities=7% Similarity=0.168 Sum_probs=25.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 036579999985778778999834489999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) .+.|-.++|+++|+|++++.+|..++-..= T Consensus 24 ~gltq~elA~~lg~s~~~is~~E~G~~~~s 53 (80) T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNGINALN 53 (80) T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTTSSCCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 599899999878804979999888999999 No 193 >1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2 Probab=73.46 E-value=1.7 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=16.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 0365799999857787789998344 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .|.|..+||+.+|+|..|+.+|..+ T Consensus 48 ~G~s~~eIA~~L~iS~~TV~~~~~~ 72 (99) T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKS 72 (99) T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2899999998979699999999999 No 194 >1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A* Probab=73.26 E-value=1.6 Score=21.99 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=26.3 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 1036579999985778778999834489999 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) -.+.|..++|+.+|||++++.+|..++..+= T Consensus 28 ~~gltQ~elA~~lGis~~~is~~E~G~~~~s 58 (92) T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALFNGINALN 58 (92) T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTTSSCCC T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 9299999999888878857999975999999 No 195 >1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A Probab=72.99 E-value=2 Score=21.14 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=27.4 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH Q ss_conf 036579999985778778999834489999999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227) .+.|..++|+.+|+|++++..+-.++...=...+.. T Consensus 13 ~~ltq~~la~~~gis~~~is~~E~g~~~ps~~~l~~ 48 (66) T 1utx_A 13 KKISQSELAALLEVSRQTINGIEKNKYNPSLQLALK 48 (66) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 599999999975969999999987997899999999 No 196 >2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} Probab=72.67 E-value=1.3 Score=22.61 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=27.4 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 999987281036579999985778778999834489 Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) +++|++. -.+.|+.+||++.|++++|+|++..+=. T Consensus 20 Le~l~~~-~~~~t~~eia~~l~l~~st~~rlL~tL~ 54 (257) T 2g7u_A 20 LLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQ 54 (257) T ss_dssp HHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999857-9998999999997929999999999999 No 197 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A* Probab=72.51 E-value=4 Score=18.97 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=23.7 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 999872810365799999857787789998344 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) +++.+.| ..|..+||+++|+|..++.+..+. T Consensus 34 ~~L~~d~--R~s~~eiA~~lglS~~tV~~Ri~r 64 (171) T 2e1c_A 34 KILQNDG--KAPLREISKITGLAESTIHERIRK 64 (171) T ss_dssp HHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999838--999999999989099999999999 No 198 >1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 Probab=72.47 E-value=2.1 Score=21.11 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.3 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 103657999998577877899983448 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) -.+.|..++|+.+|||+++|..|=.++ T Consensus 12 ~~glsq~eLa~~~gis~~~is~~E~g~ 38 (111) T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERNL 38 (111) T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTC T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 849999999878698999999998799 No 199 >2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A Probab=71.90 E-value=2.7 Score=20.20 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 7999999999999872810365799999857787789998344 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) |......-+.++=.-+=-.+.|++++|+++|||+++|-..=.+ T Consensus 4 ~~~~~~~lg~rir~~R~~~~ltl~~LA~~~GvS~~~lS~iE~G 46 (198) T 2bnm_A 4 TKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENG 46 (198) T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 3056799999999999985999999999979899999999849 No 200 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Probab=71.88 E-value=3.6 Score=19.29 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+.+.|.+. T Consensus 61 ~~~vs~~v~~Le~~gli~ 78 (139) T 3eco_A 61 GPTVSNLLRNLERKKLIY 78 (139) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 889999999999888965 No 201 >1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Probab=71.76 E-value=2 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 0365799999857787789998344 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .|.|..+||+++|+|..|+-.|-.+ T Consensus 35 ~G~s~~eIA~~l~iS~~TV~~~~~~ 59 (82) T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKH 59 (82) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2899999976848889999999999 No 202 >1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} Probab=71.71 E-value=2.1 Score=21.08 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 365799999857787789998344 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) =+++.++++..|+|+.|||..-++ T Consensus 10 ll~~keV~~~~g~srstiy~~~~~ 33 (66) T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKS 33 (66) T ss_dssp EECHHHHHHHHSSCHHHHHHHHHH T ss_pred EECHHHHHHHHCCCHHHHHHHHHC T ss_conf 164999999979789998667318 No 203 >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=71.69 E-value=2.5 Score=20.44 Aligned_cols=32 Identities=6% Similarity=0.283 Sum_probs=25.1 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 9998728103657999998577877899983448 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) .++.+. ...|..+||+++|+|.+|+++..+.- T Consensus 10 ~~L~~d--~R~s~~eiA~~lglS~~tv~~Ri~rL 41 (162) T 3i4p_A 10 RILQED--STLAVADLAKKVGLSTTPCWRRIQKM 41 (162) T ss_dssp HHHTTC--SCSCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999985--89999999999891999999999999 No 204 >3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Probab=71.07 E-value=2.5 Score=20.54 Aligned_cols=27 Identities=11% Similarity=0.401 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 36579999985778778999834489999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) ..|+.++|+..|||+.||-| |. |.+|+ T Consensus 2 ~mtI~evA~~~Gvs~~tLRy-Ye-~~GLl 28 (142) T 3gp4_A 2 SLNIKEASEKSGVSADTIRY-YE-RIGLI 28 (142) T ss_dssp CBCHHHHHHHHTSCHHHHHH-HH-HHTSS T ss_pred CCCHHHHHHHHCCCHHHHHH-HH-HCCCC T ss_conf 51399999998959999999-99-83686 No 205 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A Probab=70.39 E-value=2.9 Score=20.05 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=23.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 0365799999857787789998344899 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ...|..+||+++|+|.++++++...-++ T Consensus 23 ~R~s~~eia~~~gls~~tv~~Ri~~L~~ 50 (162) T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLED 50 (162) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 8999999999989199999999999985 No 206 >2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} Probab=70.36 E-value=1.6 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.6 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 10365799999857787789998344 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) ..|.|..+||+.+|||..|+..|..+ T Consensus 42 ~~G~s~~eIA~~L~iS~~TV~~~~~~ 67 (91) T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSN 67 (91) T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHH T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 92899999999978888799999999 No 207 >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} Probab=70.23 E-value=3.6 Score=19.28 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHH--HHCCCHHHHHHHHCC Q ss_conf 77999999999999872810365799999--857787789998344 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAA--HLAISPGNLYYHFRN 47 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~--~aGvs~gtlY~~F~s 47 (227) .|+++||+. +.++| ..|..+||. ..|+|+.++.+|-+- T Consensus 13 ~~d~rILe~----L~~~g--~~t~~elA~~~~lgis~~~Vs~hL~~ 52 (111) T 3b73_A 13 IWDDRILEI----IHEEG--NGSPKELEDRDEIRISKSSVSRRLKK 52 (111) T ss_dssp HHHHHHHHH----HHHHS--CBCHHHHHTSTTCCSCHHHHHHHHHH T ss_pred HHHHHHHHH----HHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 379999999----99859--98899998770579899999999999 No 208 >2pg4_A Uncharacterized protein; NP_147569.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT; 2.21A {Aeropyrum pernix K1} SCOP: a.4.5.48 Probab=69.81 E-value=4.7 Score=18.40 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH Q ss_conf 99999999998728103657999998577877899983448999999 Q T0611 8 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227) Q Consensus 8 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227) ||+-+ +--|..+||. -|+.+|.++.|||..+++ .+-|+-|+.+ T Consensus 16 rilpt-llefekkgye-pslaeivkasgvsektff--mglkdrlira 58 (95) T 2pg4_A 16 RILPT-LLEFEKKGYE-PSLAEIVKASGVSEKTFF--MGLKDRLIRA 58 (95) T ss_dssp HHHHH-HHHHHHTTCC-CCHHHHHHHHCCCHHHHH--TTHHHHHHHT T ss_pred HHHHH-HHHHHHCCCC-CCHHHHHHHCCCCHHHHH--HHHHHHHHHH T ss_conf 99889-9999862688-309999987285366775--4448899995 No 209 >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Probab=69.52 E-value=3.6 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 799999999999987281036579999985778778999834 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) ||-+||.. +.+ | ..|+.+||+..|+|.+++++|-. T Consensus 26 ~Rl~Il~~----L~~-~--~~~v~eLa~~l~is~stvS~HL~ 60 (108) T 2kko_A 26 RRLQILDL----LAQ-G--ERAVEAIATATGMNLTTASANLQ 60 (108) T ss_dssp TTHHHHHH----HTT-C--CEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHH----HHC-C--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999----981-9--97899999998909999999999 No 210 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=69.47 E-value=4.6 Score=18.47 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=9.0 Q ss_pred CCCHHHHHHHHCCCHHHHHH Q ss_conf 36579999985778778999 Q T0611 24 NITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~ 43 (227) +.|+.+||+..|++++++.+ T Consensus 45 ~~t~~ela~~l~i~~~~vs~ 64 (145) T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSG 64 (145) T ss_dssp SBCHHHHHHHHTCCHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHH T ss_conf 94999999998978989999 No 211 >3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} Probab=69.00 E-value=1.8 Score=21.54 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=28.7 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 9999987281036579999985778778999834489999 Q T0611 13 SLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 13 A~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) -..+..++| .|..++|+.+|||++++.++-.++...= T Consensus 15 ik~~r~~~g---lsq~~lA~~~gvs~~~is~~e~g~~~p~ 51 (76) T 3bs3_A 15 IKVVLAEKQ---RTNRWLAEQMGKSENTISRWCSNKSQPS 51 (76) T ss_dssp HHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTSSCCC T ss_pred HHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 999999939---9899999998989999999986998999 No 212 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Probab=68.85 E-value=4.9 Score=18.26 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=24.3 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 99987281036579999985778778999834 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +++.+.| ..|..+||+.+|+|.+|+.+... T Consensus 15 ~~L~~d~--R~s~~eia~~~g~s~~tv~~Ri~ 44 (152) T 2cg4_A 15 EALMGNA--RTAYAELAKQFGVSPETIHVRVE 44 (152) T ss_dssp HHHHHCT--TSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999858--99999999998877589999999 No 213 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=68.66 E-value=2.6 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.1 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHH-----HCCHHHHHHHHH Q ss_conf 810365799999857787789998-----344899999999 Q T0611 21 GERNITTNHIAAHLAISPGNLYYH-----FRNKSDIIYEIF 56 (227) Q Consensus 21 G~~~~t~~~IA~~aGvs~gtlY~~-----F~sKe~Ll~av~ 56 (227) -+...|+.+||+++|||..||.+. |+|=.++-.++. T Consensus 36 ~v~~~si~~lA~~~~vS~sTI~Rf~kkLG~~Gf~efk~~l~ 76 (111) T 2o3f_A 36 XAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVA 76 (111) T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 76446899999897989889999999947798999999999 No 214 >2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3 Probab=68.56 E-value=5 Score=18.24 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=22.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 3657999998577877899983448 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) +.|++++|+.+|||+++|...=.+| T Consensus 27 ~~s~~elA~~~Gvs~~~is~iE~G~ 51 (86) T 2ofy_A 27 DMSMVTVAFDAGISVETLRKIETGR 51 (86) T ss_dssp TSCHHHHHHHHTCCHHHHHHHHTTC T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 5999999999895999999998699 No 215 >3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} Probab=68.14 E-value=2.3 Score=20.75 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=25.9 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 8103657999998577877899983448999 Q T0611 21 GERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 21 G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) =-.+.|..++|+.+|+|+.++..+-.++... T Consensus 21 ~~~glsq~~la~~~gis~~~i~~~E~G~~~~ 51 (82) T 3clc_A 21 LEKGMTQEDLAYKSNLDRTYISGIERNSRNL 51 (82) T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTTCCCC T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 9829999999878399897999998699899 No 216 >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* Probab=68.00 E-value=3.5 Score=19.43 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=25.6 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 9998728103657999998577877899983448 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) +++.+. ...|..+||+++|+|.+++.+..+.- T Consensus 10 ~~L~~d--~r~s~~~ia~~~g~s~~tv~~Ri~rL 41 (150) T 2pn6_A 10 KILQYN--AKYSLDEIAREIRIPKATLSYRIKKL 41 (150) T ss_dssp HHHTTC--TTSCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999983--89999999999891999999999999 No 217 >2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A Probab=67.31 E-value=3.2 Score=19.68 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=22.7 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHHH Q ss_conf 365799999857787789998344899999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDIIY 53 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~ 53 (227) -.|+.++|+..|||..||.|| .|.+|+. T Consensus 11 ~~tIGevA~~~gvs~~TLR~Y--E~~GLl~ 38 (154) T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFY--ESKGLIT 38 (154) T ss_dssp CBCHHHHHHHHTSCHHHHHHH--HHTTSSC T ss_pred CCCHHHHHHHHCCCHHHHHHH--HHCCCCC T ss_conf 626999999988699999999--9888999 No 218 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=67.29 E-value=5 Score=18.25 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+++.|.+. T Consensus 73 ~~tvs~~l~~L~~~GlV~ 90 (168) T 2nyx_A 73 PSATGRMVDRLVGAELID 90 (168) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHHCEEE T ss_conf 989999999996210367 No 219 >3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A Probab=67.01 E-value=3.2 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=23.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 03657999998577877899983448999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) .+.|..++|+.+|||++++..+-.++... T Consensus 40 ~glSq~elA~~~gis~~~is~iE~G~~~p 68 (99) T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERNSRNL 68 (99) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCSCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 09999999999895999999998157899 No 220 >1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A Probab=66.91 E-value=3.2 Score=19.70 Aligned_cols=21 Identities=14% Similarity=-0.028 Sum_probs=18.9 Q ss_pred CCHHHHHHHHCCCHHHHHHHH Q ss_conf 657999998577877899983 Q T0611 25 ITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F 45 (227) -|+.++|+..|||+.||.||= T Consensus 3 ytI~e~a~~~gvs~~tlR~Ye 23 (109) T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYD 23 (109) T ss_dssp BCHHHHHHHHSCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 119999999895999999998 No 221 >3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} Probab=66.73 E-value=2.7 Score=20.19 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=27.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH Q ss_conf 036579999985778778999834489999999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227) .+.|-.++|+.+|||+.+|..+-.+|..+=..++.. T Consensus 30 ~glsq~eLA~~lGis~~~is~ie~G~~~~s~e~a~~ 65 (104) T 3cec_A 30 LDINTANFAEILGVSNQTIQEVINGQRSITVDIAIR 65 (104) T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 799899999996867999999982886787999999 No 222 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=66.62 E-value=5.4 Score=17.94 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHCCCCCC Q ss_conf 999999999986598889 Q T0611 124 AAINRIFAKLADAGIIQP 141 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~~ 141 (227) ..+...+..+.+.|.+.- T Consensus 65 ~tvs~~i~~L~~~glv~r 82 (147) T 2hr3_A 65 SNLAALLRELERGGLIVR 82 (147) T ss_dssp HHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHHCCCEEE T ss_conf 689999999985798798 No 223 >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} Probab=65.75 E-value=5.6 Score=17.82 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 9999999999987281036579999985778778999 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~ 43 (227) |-.|.+=..+-.++|+ ++..+||+.+|||++++.. T Consensus 39 EdYLe~Iy~L~~~~~~--vr~~dIA~~L~vs~~sV~~ 73 (155) T 2h09_A 39 DDYVELISDLIREVGE--ARQVDMAARLGVSQPTVAK 73 (155) T ss_dssp HHHHHHHHHHHHHHSC--CCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHCCCHHHHHH T ss_conf 9999999999962897--6099999996988779999 No 224 >3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae} Probab=65.72 E-value=2.4 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=13.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 03657999998577877899983448 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) .+.|..++|+.+|||.+++..+-.++ T Consensus 80 ~glTq~elA~~~gvs~~~is~iE~G~ 105 (141) T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENSK 105 (141) T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHTC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 29989999999897999999998799 No 225 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=65.71 E-value=5 Score=18.22 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 9999999999865988 Q T0611 124 AAINRIFAKLADAGII 139 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l 139 (227) ..+...+..+.+.|.+ T Consensus 65 ~~vs~~i~~L~~~Glv 80 (142) T 2fbi_A 65 PSMTGVLARLERDGIV 80 (142) T ss_dssp HHHHHHHHHHHHTTSE T ss_pred HHHHHHHHHHHHCCCE T ss_conf 8999999999978997 No 226 >3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp} Probab=65.65 E-value=3.1 Score=19.73 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=27.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 0365799999857787789998344899999999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEY 59 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~ 59 (227) .+.|..++|+.+|||++++..|-.++...=..++..+ T Consensus 35 ~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~l~ki 71 (111) T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKY 71 (111) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 2999999999979889899999879999999999999 No 227 >3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} Probab=65.46 E-value=3.3 Score=19.57 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=18.8 Q ss_pred CCHHHHHHHHCCCHHHHHHH Q ss_conf 65799999857787789998 Q T0611 25 ITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~ 44 (227) .|+.++|+..|||+.||.|| T Consensus 17 ytIgevA~~~gvs~~tLRyY 36 (148) T 3gpv_A 17 YTIGQVAKMQHLTISQIRYY 36 (148) T ss_dssp BCHHHHHHHTTCCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHH T ss_conf 76999999989498899999 No 228 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Probab=65.29 E-value=5.8 Score=17.76 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+++.|.+. T Consensus 68 ~~~vs~~l~~L~~~g~i~ 85 (152) T 3bj6_A 68 RQYISRILQEVQRAGLIE 85 (152) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 889999999999778247 No 229 >3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} Probab=65.11 E-value=5.8 Score=17.74 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=14.4 Q ss_pred HHCCCHHHHHHHHHHHHHHHHCCHH Q ss_conf 1218988999999999985410201 Q T0611 194 VPYLTPEYRERVLALREKYRPTLPE 218 (227) Q Consensus 194 ~p~lt~~~~~~l~~l~~~~~~~l~~ 218 (227) ...++++..+.+..+.++....+++ T Consensus 115 ~~~l~~ee~~~l~~~L~~l~~~l~~ 139 (142) T 3bdd_A 115 NQILTVEESEQFLATLDKLLIGLQN 139 (142) T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHT T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8069999999999999999997762 No 230 >1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A Probab=64.00 E-value=3.8 Score=19.07 Aligned_cols=26 Identities=4% Similarity=0.273 Sum_probs=20.8 Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 6579999985778778999834489999 Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) .++.++|+..|||+.||-|| .+.+|+ T Consensus 1 M~IgElA~~~gvs~~tlRyY--e~~GLl 26 (135) T 1q06_A 1 MNISDVAKITGLTSKAIRFY--EEKGLV 26 (135) T ss_dssp CCHHHHHHHHTCCHHHHHHH--HHTTCS T ss_pred CCHHHHHHHHCCCHHHHHHH--HHCCCC T ss_conf 97899999989199999999--987898 No 231 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Probab=63.56 E-value=4.7 Score=18.41 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=24.2 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 999872810365799999857787789998344 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .++.+. ...|+.+||++.|+|.+++++..+. T Consensus 11 ~~L~~~--~r~s~~~ia~~~gls~~~v~~Ri~~ 41 (141) T 1i1g_A 11 EILEKD--ARTPFTEIAKKLGISETAVRKRVKA 41 (141) T ss_dssp HHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999985--8989999999989099999999999 No 232 >3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Probab=62.89 E-value=3.7 Score=19.16 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.4 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 2810365799999857787789998344899 Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +--.+.|..++|+.+|||++++..+=.++.. T Consensus 21 R~~~gltq~elA~~~gvs~~~is~~E~G~~~ 51 (126) T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIENKGQH 51 (126) T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHSCCC T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCCCC T ss_conf 9983999999977429988589999748779 No 233 >2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans} Probab=62.76 E-value=4.5 Score=18.58 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=20.9 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 36579999985778778999834489999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) +-|+.++|+..|||+.||-||= |.+|+ T Consensus 1 tytI~e~a~~~gvs~~tlR~Ye--~~GLl 27 (108) T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYD--DIGLL 27 (108) T ss_dssp CBCHHHHHHHHTCCHHHHHHHH--HHTSS T ss_pred CCCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 9518999999894999999987--53786 No 234 >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Probab=62.65 E-value=5.6 Score=17.88 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999998728103-6579999985778778999834489 Q T0611 9 ILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 9 Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ||+ ..|....|-. .....||..+|+|...|-.+|.|+. T Consensus 19 ~Le---~~F~~~~~P~~~~~~~La~~~gl~~~qV~~WF~NrR 57 (61) T 1akh_A 19 FLE---EVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 57 (61) T ss_dssp HHH---HHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 999---999887999999999999997879999679778521 No 235 >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Probab=62.57 E-value=5.2 Score=18.09 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 799999999999987281036579999985778778999834 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +.|.+|.+=..+-.++| .++..+||+.+|||++++....+ T Consensus 3 ~~EdyL~~i~~l~~~~~--~v~~~~iA~~L~v~~~sv~~~l~ 42 (214) T 3hrs_A 3 NKEDYLKCLYELGTRHN--KITNKEIAQLMQVSPPAVTEMMK 42 (214) T ss_dssp CHHHHHHHHHHTTSSCS--CCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 69999999999983499--87599999997899289999999 No 236 >3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} Probab=62.53 E-value=4.6 Score=18.46 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=6.5 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 18988999999999 Q T0611 196 YLTPEYRERVLALR 209 (227) Q Consensus 196 ~lt~~~~~~l~~l~ 209 (227) .+|+..++.+.-+. T Consensus 197 ~lt~re~~il~~~~ 210 (258) T 3clo_A 197 ILSEREKEILRCIR 210 (258) T ss_dssp SSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 79906999999998 No 237 >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} Probab=62.52 E-value=6.1 Score=17.56 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=15.9 Q ss_pred HHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHH Q ss_conf 99987281036579999985-----77877899983 Q T0611 15 ELFNDKGERNITTNHIAAHL-----AISPGNLYYHF 45 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~a-----Gvs~gtlY~~F 45 (227) +.+.+..-.-.|.++|.+++ .||.+|+|+.- T Consensus 24 ~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYRtL 59 (150) T 2w57_A 24 EVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVL 59 (150) T ss_dssp HHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 999828999999999999998608885789999999 No 238 >2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A Probab=62.48 E-value=2.5 Score=20.53 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=28.3 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH Q ss_conf 03657999998577877899983448999999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQ 57 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~ 57 (227) .+.|-.++|+.+|||+.+|..+-.+|..+=..++. T Consensus 20 ~glsq~~lA~~lgvs~~~is~ie~G~~~~s~~~~~ 54 (94) T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTGKAALTPEMAI 54 (94) T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHH T ss_conf 69999999999687758899998464337699999 No 239 >2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} Probab=62.05 E-value=3.8 Score=19.14 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=31.0 Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 810365799999857787789998344899999999999 Q T0611 21 GERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEY 59 (227) Q Consensus 21 G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~ 59 (227) -..+.|-.++|+.+|||+.+|..+-.+|..+=..+...+ T Consensus 21 ~~~glsq~eLA~~lGvs~~~is~i~~G~~~it~~~a~rL 59 (113) T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRL 59 (113) T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 767999999999959999999999828778999999999 No 240 >1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 Probab=61.97 E-value=6.6 Score=17.34 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=20.6 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999987281036579999985778778999834 Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +.-+.++|+ |..+||+..|.|++.++.|-. T Consensus 45 ~~~l~~~g~---t~~eiA~~lg~s~s~v~~~l~ 74 (178) T 1r71_A 45 IGRELAKGK---KKGDIAKEIGKSPAFITQHVT 74 (178) T ss_dssp HHHHHHTTC---CHHHHHHHHTCCHHHHHHHHG T ss_pred HHHHHHCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 999998389---899999998889999999999 No 241 >1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A Probab=61.45 E-value=4.8 Score=18.36 Aligned_cols=27 Identities=11% Similarity=0.336 Sum_probs=22.3 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 103657999998577877899983448 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) -.|+|+..|+.++|+|.+|+..-+... T Consensus 20 krG~sLa~lsr~~Gls~stl~nal~rp 46 (74) T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALERH 46 (74) T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTSS T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 968879999999099878999988377 No 242 >2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} Probab=61.29 E-value=3.8 Score=19.09 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=28.1 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH Q ss_conf 036579999985778778999834489999999999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227) .|.|..++|+.+|||++++.+|-.+|-..=...+.. T Consensus 13 ~glsq~elA~~~gis~~tis~~E~G~~~ps~~~l~~ 48 (158) T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDI 48 (158) T ss_dssp ------------------------------------ T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 399999999997979999999987987899999999 No 243 >2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L Probab=60.99 E-value=1.9 Score=21.41 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=25.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 036579999985778778999834489999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) .+.|..++|+.+|+|++++..+-.++...- T Consensus 17 ~glsq~ela~~~gi~~~~i~~~E~g~~~p~ 46 (68) T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERSETEPN 46 (68) T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCB T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 299999999897969999999987998999 No 244 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Probab=60.83 E-value=3.7 Score=19.20 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 99999999999865988899388999999999999999887765531002200010899999999999987121898899 Q T0611 123 LAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLTPEYR 202 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p~lt~~~~ 202 (227) ...+..++..+++.|.+.-.+++.+.... .+.+ .+....-...+..........+..-++++.. T Consensus 71 ~~t~sr~v~~L~~~gli~r~~~~~D~R~~-~l~l---------------T~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~ 134 (148) T 3jw4_A 71 GASITSMLQGLEKKGYIERRIPENNARQK-NIYV---------------LPKGAALVEEFNNIFLEVEESITKGLTKDEQ 134 (148) T ss_dssp --CHHHHHHHHHHTTSBCCC--------C-CCCB---------------CHHHHHHHHHHHHHHHHHHHHTTTTCCHHHH T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCCC-EEEE---------------CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 85899999999988896315777888860-4478---------------9889999999999999999999857999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999998541 Q T0611 203 ERVLALREKYRP 214 (227) Q Consensus 203 ~~l~~l~~~~~~ 214 (227) +.+..+.++... T Consensus 135 ~~l~~~L~kl~~ 146 (148) T 3jw4_A 135 KQLMSILIKVNR 146 (148) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999997 No 245 >3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} Probab=60.80 E-value=4.8 Score=18.38 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=21.1 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 36579999985778778999834489999 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) .-|+.++|+..|||+.||-||= |.+|+ T Consensus 4 ~Y~Igeva~~~gvs~~TLRyYE--~~GLl 30 (146) T 3hh0_A 4 AWLISEFASVGDVTVRALRYYD--KINLL 30 (146) T ss_dssp CBCHHHHHHHHTCCHHHHHHHH--HTTSS T ss_pred CCCHHHHHHHHCCCHHHHHHHH--HCCCC T ss_conf 7749999999894989999999--87898 No 246 >1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1 Probab=60.38 E-value=2.4 Score=20.57 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 9999999999872810365799999857787789998344 Q T0611 8 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 8 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) .||+..++-|.++|..-. +|.+.+..|.+++.||.-|++ T Consensus 54 ~vI~~lR~~y~~~~~~P~-~R~l~k~~~~~~~~L~~LFp~ 92 (111) T 1ji8_A 54 KLVKYLREYWETFGTCPP-IKMVTKETGFSLEKIYQLFPS 92 (111) T ss_dssp HHHHHHHHHTTTTSCCCC-STTGGGGSCCCHHHHHHHTTS T ss_pred HHHHHHHHHHHHHCCCCC-HHHHHHHHCCCHHHHHHHCCC T ss_conf 999999999999789970-899999818788999998599 No 247 >1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12 Probab=60.08 E-value=3.7 Score=19.16 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=26.4 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 28103657999998577877899983448999 Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +=-.+.|..++|+.+|||..++.++-.++... T Consensus 22 R~~~gltq~elA~~~gvs~~~is~~E~g~~~p 53 (91) T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESGRAIP 53 (91) T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCC T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99818869999998099999999997699889 No 248 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Probab=59.70 E-value=4.6 Score=18.48 Aligned_cols=28 Identities=4% Similarity=-0.050 Sum_probs=18.8 Q ss_pred HCCCHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 2189889999999999854102014763 Q T0611 195 PYLTPEYRERVLALREKYRPTLPEAQGI 222 (227) Q Consensus 195 p~lt~~~~~~l~~l~~~~~~~l~~~~~~ 222 (227) ..++++..+.+..+.+++...+++..+. T Consensus 132 ~~l~~ee~~~l~~~L~~l~~~l~~~as~ 159 (160) T 3boq_A 132 RAVSDQDMVEASAALRGILESMQTGASL 159 (160) T ss_dssp TTCCHHHHHHHHHHHHHHHHHC------ T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 6799999999999999999975014679 No 249 >2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622} Probab=59.51 E-value=4 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 0365799999857787789998 Q T0611 23 RNITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~ 44 (227) -..|+.++|+..|||..||-|| T Consensus 4 ~~~~I~eva~~~gvs~~tlR~y 25 (81) T 2jml_A 4 MTLRIRTIARMTGIREATLRAW 25 (81) T ss_dssp CCEEHHHHHHTTSTTHHHHHHH T ss_pred CEEEHHHHHHHHCCCHHHHHHH T ss_conf 4355999999988499999999 No 250 >2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii} Probab=59.15 E-value=3.3 Score=19.58 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=21.9 Q ss_pred HCCCCCCCHHHHH-HHHCCCHHHHHHHHCC Q ss_conf 7281036579999-9857787789998344 Q T0611 19 DKGERNITTNHIA-AHLAISPGNLYYHFRN 47 (227) Q Consensus 19 e~G~~~~t~~~IA-~~aGvs~gtlY~~F~s 47 (227) ++=|+++|=++-| =++||+-|+|||-|-+ T Consensus 11 ~kYF~n~TdrerA~FEaGIklGALyHQFvG 40 (122) T 2ogf_A 11 KKYFKNLTDRERAVFEGGITLGALFHQFVG 40 (122) T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHEECC T ss_conf 887513986898888630113013312126 No 251 >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28 Probab=59.01 E-value=7.3 Score=16.98 Aligned_cols=17 Identities=0% Similarity=0.161 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999998659888 Q T0611 124 AAINRIFAKLADAGIIQ 140 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227) ..+..++..+.+.|.+. T Consensus 65 ~tvs~~l~~Le~~glv~ 81 (141) T 3bro_A 65 STATVLLQRMEIKKLLY 81 (141) T ss_dssp HHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 18999999998554534 No 252 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=58.87 E-value=7.4 Score=16.96 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+...+..+++.|.+. T Consensus 69 ~~tvs~~l~~L~~~glv~ 86 (154) T 2qww_A 69 GSSAAANVDGLISLGLVV 86 (154) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 004789999998789758 No 253 >2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} Probab=58.78 E-value=6.1 Score=17.55 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.5 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 0365799999857787789998344 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) ...|+.+||++.|+|.+++.+..+. T Consensus 22 ~R~s~~~iA~~lgls~~tv~~Ri~r 46 (151) T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDK 46 (151) T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999989699999999999 No 254 >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=58.01 E-value=7.1 Score=17.08 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 99999999987281036-579999985778778999834489999 Q T0611 9 ILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) ||+ ..|...-|-.. .+..||...|++...|-.+|.++..-+ T Consensus 17 ~Le---~~F~~~~~P~~~~~~~La~~~gL~~~qI~~WF~NrR~k~ 58 (76) T 2ecc_A 17 ILK---SFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYAL 58 (76) T ss_dssp HHH---HHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH T ss_pred HHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999---999886999999999999998919999999999999988 No 255 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A Probab=57.79 E-value=6.9 Score=17.17 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999999986598889938 Q T0611 122 CLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 122 ~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ....+...+..+++.|.+.-..+ T Consensus 64 ~~~~vsr~l~~L~~~g~v~r~~~ 86 (142) T 3ech_A 64 DKALITRKIRELEGRNLVRRERN 86 (142) T ss_dssp --CHHHHHHHHHHHTTSEEC--- T ss_pred CHHHHHHHHHHHHHHHCEEECCC T ss_conf 57269999999999613200016 No 256 >3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} Probab=57.72 E-value=5.3 Score=18.05 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=22.8 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 1036579999985778778999834489 Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) -.+.|..++|+.+|||+.++..|=.++. T Consensus 22 ~~gltQ~elA~~lgvs~~tv~~wE~G~~ 49 (73) T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEKGNA 49 (73) T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHTTSS T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 8699999999997989999999994998 No 257 >2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} Probab=57.20 E-value=6.7 Score=17.25 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=23.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 03657999998577877899983448999 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) .+.|..++|+.+|||+.+++++=.++... T Consensus 22 ~gltq~~lA~~lgvs~~~is~~E~G~~~p 50 (84) T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESFERRL 50 (84) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSSCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 59999999998726999999998799999 No 258 >3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} Probab=57.07 E-value=6 Score=17.61 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=18.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 36579999985778778999834 Q T0611 24 NITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) +-.+...|+.+|||+.+||+.-+ T Consensus 32 ~gn~~~aA~~Lgi~r~tL~~klk 54 (63) T 3e7l_A 32 DYDLKRTAEEIGIDLSNLYRKIK 54 (63) T ss_dssp TTCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99899999998959999999999 No 259 >3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} Probab=55.55 E-value=5.5 Score=17.91 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=24.0 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 28103657999998577877899983448999 Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +--.+.|..++|+.+|||.+++-.+=.++..+ T Consensus 23 R~~~gltq~~lA~~~gis~~~i~~iE~G~~~~ 54 (83) T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSKTENAERRL 54 (83) T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCC T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99829999999988538999999998799899 No 260 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=55.31 E-value=8.3 Score=16.55 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+.+.|.+. T Consensus 65 ~~~vs~~l~~L~~~glv~ 82 (155) T 1s3j_A 65 PSAVTLMADRLEQKNLIA 82 (155) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 989999999998624255 No 261 >1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H Probab=55.29 E-value=6.2 Score=17.55 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=21.3 Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 987281036579999985778778999 Q T0611 17 FNDKGERNITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 17 f~e~G~~~~t~~~IA~~aGvs~gtlY~ 43 (227) |.=.|+...|..+||+..|||+..+-. T Consensus 23 fGl~~~~~~tl~eIa~~lgiS~erVrq 49 (73) T 1ku3_A 23 KGLIDGREHTLEEVGAYFGVTRERIRQ 49 (73) T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHHHH T ss_pred HCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 188999987899999998979999999 No 262 >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A Probab=55.29 E-value=1.2 Score=22.93 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 3779999999999998728103657999998577877899983448 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) -.||-+||..- . +| ..|+.+|++.+|+|++++.+|.+.- T Consensus 11 ~~~R~~Il~~L----~-~~--~~~~~ela~~~~~s~~~vs~HL~~L 49 (232) T 2qlz_A 11 NKVRRDLLSHL----T-CM--ECYFSLLSSKVSVSSTAVAKHLKIM 49 (232) T ss_dssp SHHHHHHHHHH----T-TT--TTCSSSSCTTCCCCHHHHHHHHHHH T ss_pred CHHHHHHHHHH----H-CC--CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999----8-19--9979999999891999999999999 No 263 >1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Probab=55.21 E-value=4.4 Score=18.63 Aligned_cols=40 Identities=18% Similarity=0.059 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 9999999998728103657999998577877899983448999 Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) |=+--..+-.++ +.|.+++|+++|+|+++|..+=.++-.. T Consensus 12 ig~rir~~R~~~---glt~~elA~~~g~s~~~ls~iE~g~~~p 51 (192) T 1y9q_A 12 IANQLKNLRKSR---GLSLDATAQLTGVSKAMLGQIERGESSP 51 (192) T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHSSCHHHHHHHHTTCSCC T ss_pred HHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999999999982---9999999999894999999997699755 No 264 >1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12 Probab=54.87 E-value=6.2 Score=17.51 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=14.8 Q ss_pred CHHHHHHHHCCCHHHHHHHH Q ss_conf 57999998577877899983 Q T0611 26 TTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 26 t~~~IA~~aGvs~gtlY~~F 45 (227) .+.+-|+.+|||+.|||+.- T Consensus 56 N~s~AAr~LGIsR~TLyrkl 75 (81) T 1umq_A 56 NVSETARRLNMHRRTLQRIL 75 (81) T ss_dssp CHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHH T ss_conf 09999999698999999999 No 265 >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=54.62 E-value=8.5 Score=16.47 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 79999999999998728103-65799999857787789998344899 Q T0611 5 TRDKILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) |++++ ..-...|...-|-. .....||..+|++...|..+|.++.. T Consensus 16 t~eQ~-~~Le~~F~~~~~P~~~~~~~LA~~~~l~~~qV~~WFqNrR~ 61 (76) T 2dn0_A 16 SHEQL-SALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61 (76) T ss_dssp CHHHH-HHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred CHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEHHHHHHHH T ss_conf 99999-99999999776778999999999969995534138767578 No 266 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Probab=54.48 E-value=8.6 Score=16.46 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=14.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHH Q ss_conf 18988999999999985410201 Q T0611 196 YLTPEYRERVLALREKYRPTLPE 218 (227) Q Consensus 196 ~lt~~~~~~l~~l~~~~~~~l~~ 218 (227) .+||+|++.++++.......+.+ T Consensus 98 ~lT~~G~~~~~~~~~~~~~~~~~ 120 (127) T 2frh_A 98 LVNAQQRKKIESLLSRVNKRITE 120 (127) T ss_dssp ECCSHHHHHHHHHHHHHHHHHHH T ss_pred EECHHHHHHHHHHHHHHHHHHHH T ss_conf 98988999999999999999986 No 267 >2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor A3} Probab=54.31 E-value=7.1 Score=17.07 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=17.6 Q ss_pred CHHHHHHHHCCCHHHHHHHH Q ss_conf 57999998577877899983 Q T0611 26 TTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 26 t~~~IA~~aGvs~gtlY~~F 45 (227) .|.++|+.+|||+.||-||= T Consensus 2 rI~elA~~~Gvs~~tlR~ye 21 (222) T 2dg6_A 2 RLADLSKRSGVSTATIKYYL 21 (222) T ss_dssp CHHHHHHHHTCCHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHH T ss_conf 68999999892989999999 No 268 >1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Probab=54.15 E-value=8.7 Score=16.42 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=25.9 Q ss_pred HHHHHHCC-----CCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 99998728-----1036579999985778778999834489 Q T0611 14 LELFNDKG-----ERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 14 ~~lf~e~G-----~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) -..|.+.+ -....+.+||++.|+++..|-.+|.|+. T Consensus 33 ~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~v~vWF~N~R 73 (80) T 1wh5_A 33 LALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNK 73 (80) T ss_dssp HHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHS T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCC T ss_conf 99998833545697999999999996898889523040276 No 269 >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Probab=53.69 E-value=8.8 Score=16.37 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=26.6 Q ss_pred HHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999987281036-5799999857787789998344899 Q T0611 14 LELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 14 ~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ...|.+.-|-.. ....||...|++...|...|.++.. T Consensus 33 e~~F~~~~~P~~~~~~~La~~~gl~~~~V~~WFqNrR~ 70 (80) T 2da3_A 33 YQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRA 70 (80) T ss_dssp HHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99998738989999999999979097891141376555 No 270 >3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} Probab=53.68 E-value=4.7 Score=18.41 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=29.1 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 999999998728103657999998577877899983448999 Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) |-..++-+.+. .+.|-.++|+.+|||++++.++=.++..+ T Consensus 15 lg~~lk~~R~~--~gltq~elA~~lgvs~~~is~~E~G~~~~ 54 (86) T 3eus_A 15 LCQRLRQARLD--AGLTQADLAERLDKPQSFVAKVETRERRL 54 (86) T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHTTCCHHHHHHHHTTSSCC T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99999999998--49999999999796999999998899999 No 271 >1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Probab=53.43 E-value=8.9 Score=16.34 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=4.7 Q ss_pred CCCHHHHHHH Q ss_conf 1898899999 Q T0611 196 YLTPEYRERV 205 (227) Q Consensus 196 ~lt~~~~~~l 205 (227) .|++..+..+ T Consensus 187 ~L~~rer~Ii 196 (239) T 1rp3_A 187 KLPEREKLVI 196 (239) T ss_dssp TSCHHHHHHH T ss_pred CCCHHHHHHH T ss_conf 7999999999 No 272 >2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82 Probab=53.40 E-value=4.9 Score=18.29 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC----CHHHHHHH Q ss_conf 779999999999998728103657999998577----87789998 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAI----SPGNLYYH 44 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGv----s~gtlY~~ 44 (227) -|||+|++.-. + ...|..+|++.+|+ +...+|.| T Consensus 11 T~RerIi~lL~----~---~~~t~~eia~~l~i~~~~~~k~vy~h 48 (105) T 2gmg_A 11 TRREKIIELLL----E---GDYSPSELARILDMRGKGSKKVILED 48 (105) T ss_dssp HHHHHHHHHTT----T---SCBCTTHHHHSSCCCSSCCHHHHHHH T ss_pred CHHHHHHHHHH----C---CCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 39999999998----3---99999999999564566638899999 No 273 >3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A Probab=53.14 E-value=7.8 Score=16.77 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=3.5 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q T0611 201 YRERVLALRE 210 (227) Q Consensus 201 ~~~~l~~l~~ 210 (227) .+..+..|.+ T Consensus 89 Y~~iL~rL~~ 98 (107) T 3frw_A 89 YEMVFSRMKE 98 (107) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999988 No 274 >2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3 Probab=52.68 E-value=8.4 Score=16.52 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=7.7 Q ss_pred CCHHHHHHHHCCCHHHHHHH Q ss_conf 65799999857787789998 Q T0611 25 ITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~ 44 (227) .|-.++|+.+|||.+++.+| T Consensus 44 ltQ~~lA~~lgvs~~ti~~~ 63 (99) T 2ppx_A 44 LTQEEFSARYHIPLGTLRDW 63 (99) T ss_dssp CCHHHHHHHHTCCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHH T ss_conf 99999998939989999999 No 275 >2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=52.59 E-value=8.5 Score=16.50 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=30.5 Q ss_pred HHHHHHHHHHC----CC-CCCCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 99999999872----81-036579999985778778999834489999 Q T0611 10 LLSSLELFNDK----GE-RNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 10 l~aA~~lf~e~----G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) ++.-...|.+. .| ..-.+.+||.++|++...|-.+|.++..-. T Consensus 20 ~~~Le~~F~~n~~~~~~p~~~~~~~La~~~gl~~~~I~~WF~NrR~k~ 67 (80) T 2da4_A 20 LATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80) T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999999999846778897999999999998819999999999999988 No 276 >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=52.25 E-value=9.3 Score=16.21 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=26.4 Q ss_pred HHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9998728103-6579999985778778999834489 Q T0611 15 ELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 15 ~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) +.|.+.-|-. ..+..||...|++...|-.+|.++. T Consensus 24 ~~F~~~~yP~~~~~~~LA~~~gL~~~~V~~WF~NrR 59 (75) T 2da5_A 24 SSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERR 59 (75) T ss_dssp HHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHT T ss_pred HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999985578999999999996854989999999989 No 277 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Probab=52.15 E-value=9.3 Score=16.20 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999998659888 Q T0611 124 AAINRIFAKLADAGIIQ 140 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227) ..+...+..+++.|.+. T Consensus 58 ~~vs~~v~~L~~~glI~ 74 (144) T 1lj9_A 58 TTAARAIKRLEEQGFIY 74 (144) T ss_dssp HHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 58999999999889963 No 278 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=51.79 E-value=9.4 Score=16.16 Aligned_cols=18 Identities=6% Similarity=0.364 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+++.|.+. T Consensus 70 ~~~vs~~l~~L~~~g~i~ 87 (150) T 2rdp_A 70 CSTTTDLVDRMERNGLVA 87 (150) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 879999999999889979 No 279 >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus} Probab=51.50 E-value=9.5 Score=16.13 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=30.0 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999987281036-579999985778778999834489 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) +++--..|.+.-|-+. ....||..+|+|...|-..|.|+. T Consensus 15 ~~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~~WFqNrR 55 (62) T 2vi6_A 15 LCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQR 55 (62) T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999977999989999999990969899246125577 No 280 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=51.00 E-value=9.6 Score=16.09 Aligned_cols=19 Identities=11% Similarity=0.426 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 9999999999986598889 Q T0611 123 LAAINRIFAKLADAGIIQP 141 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~~ 141 (227) ...+..++..+++.|.+.- T Consensus 68 ~~tisr~i~~L~~~glv~r 86 (147) T 1z91_A 68 SGTLTPMLKRMEQQGLITR 86 (147) T ss_dssp HHHHHHHHHHHHHHTSEEC T ss_pred HHHHHHHHHHHHHCCCEEE T ss_conf 7668899999997899786 No 281 >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Probab=50.99 E-value=9.7 Score=16.07 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=44.3 Q ss_pred HCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCH Q ss_conf 57787789998344899999999999999999875221--799877899999999999999877886544444--12688 Q T0611 34 LAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE--DRPITLEDMTFYLESVFDGLWSYRFFHRDLEYL--LDSDP 109 (227) Q Consensus 34 aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 109 (227) ..+++..+...+.+-.++...++......+........ ......+++..++..+ ...+.....+...+ --... T Consensus 105 ~~I~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~Rla~~L~~l---~~~~g~~~~~~~~i~~~lt~~ 181 (250) T 3e6c_C 105 CWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYEL---CSSQGKRVGDTYEITMPLSQK 181 (250) T ss_dssp EEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHHCEEETTEEEEECCCCHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCHH T ss_conf 31158777542026999999999999999999999999986634878999999999---998275567886477886899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999999999999999986598889 Q T0611 110 RLRQDYREFTNRCLAAINRIFAKLADAGIIQP 141 (227) Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~ 141 (227) .+. ....-....+.+.+.++.+.|.+.. T Consensus 182 ~LA----~~lgisr~tvsr~l~~L~~~g~I~~ 209 (250) T 3e6c_C 182 SIG----EITGVHHVTVSRVLASLKRENILDK 209 (250) T ss_dssp HHH----HHHTCCHHHHHHHHHHHHHTTSEEE T ss_pred HHH----HHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 999----8979999999999999998898997 No 282 >1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 Probab=50.64 E-value=9.8 Score=16.03 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=31.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 9737799999999999987281036579999985778778999834 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) |-++||-..-=-++-.++.++=..+|.++||+..|+|+..+..-+. T Consensus 7 Mkls~~~~yAl~~L~~La~~~~~~~s~~~IA~~~~i~~~~l~kIl~ 52 (149) T 1ylf_A 7 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMS 52 (149) T ss_dssp -CCCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH T ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7788379899999999985889977599999997949999999999 No 283 >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Probab=50.63 E-value=9.8 Score=16.03 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=7.5 Q ss_pred CCCHHHHHHHHCCCHH Q ss_conf 3657999998577877 Q T0611 24 NITTNHIAAHLAISPG 39 (227) Q Consensus 24 ~~t~~~IA~~aGvs~g 39 (227) |.|-.+|...+|...| T Consensus 21 g~sQ~dV~~al~~~~g 36 (151) T 3d1n_I 21 GLTQTQVGQAMTATEG 36 (151) T ss_dssp TCCHHHHHHHHSCSSS T ss_pred CCCHHHHHHHHHCCCC T ss_conf 6769689999973377 No 284 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=50.62 E-value=9.8 Score=16.03 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999998659888 Q T0611 124 AAINRIFAKLADAGIIQ 140 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227) ..+...+..+++.|.+. T Consensus 58 ~tvs~~i~~L~~~gli~ 74 (138) T 3bpv_A 58 GTIARTLRRLEESGFIE 74 (138) T ss_dssp HHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 89999999999689868 No 285 >2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Probab=50.53 E-value=8.5 Score=16.49 Aligned_cols=24 Identities=4% Similarity=0.145 Sum_probs=18.7 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 281036579999985778778999 Q T0611 20 KGERNITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~ 43 (227) .|....|+.+||+..|||+..+-. T Consensus 21 ~~~~~~tl~eia~~lgis~erVrq 44 (68) T 2p7v_B 21 DMNTDYTLEEVGKQFDVTRERIRQ 44 (68) T ss_dssp TSSSCCCHHHHHHHHTCCHHHHHH T ss_pred CCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999976899999998969999999 No 286 >3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A* Probab=50.40 E-value=9.1 Score=16.27 Aligned_cols=26 Identities=12% Similarity=-0.089 Sum_probs=21.5 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 281036579999985778778999834 Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .|| +.|-.+||+.+|+|+++++++.. T Consensus 39 ~~~-~~tQ~eLA~~lG~Srs~VS~~L~ 64 (189) T 3mky_B 39 NEF-AGNISALADAENISRKIITRCIN 64 (189) T ss_dssp TTT-TTCHHHHHHHHTSCHHHHHHHHH T ss_pred HHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 625-75899999997979999999999 No 287 >1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1 Probab=50.21 E-value=9.7 Score=16.08 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=29.4 Q ss_pred HHHHHHHHHCCCC-CCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999872810-36579999985778778999834489 Q T0611 11 LSSLELFNDKGER-NITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 11 ~aA~~lf~e~G~~-~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) .+--..|.+..|- ...+.+||...|++...|-..|.|+. T Consensus 21 ~~Le~~F~~n~~P~~~~~~~La~~~~l~~~~V~~WFqNrR 60 (67) T 1ocp_A 21 WSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60 (67) T ss_dssp HHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999867998999999999996869899889609887 No 288 >2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} Probab=50.14 E-value=9.1 Score=16.28 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=32.1 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9999999987281036579999985778778999834489999999999 Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227) Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227) +-..+.-..+.=-.+.|..++|+.+|||..+|..|=.++...=..++.. T Consensus 35 ig~~i~~~R~~~~kglTQ~eLA~~~gvs~~~is~~E~G~~~ps~~~l~k 83 (107) T 2jvl_A 35 VGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSK 83 (107) T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 9999999999988699899999998988999999986997899999999 No 289 >2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1 Probab=49.88 E-value=5.4 Score=17.96 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=21.0 Q ss_pred HCCCCCCCHHHHH-HHHCCCHHHHHHHHCC Q ss_conf 7281036579999-9857787789998344 Q T0611 19 DKGERNITTNHIA-AHLAISPGNLYYHFRN 47 (227) Q Consensus 19 e~G~~~~t~~~IA-~~aGvs~gtlY~~F~s 47 (227) .+=|.++|=++-| =++||+-|+|||-|-+ T Consensus 3 ~kYF~n~TdrerA~FEaGIklGALyHQFvG 32 (131) T 2iec_A 3 LKYFKRLSDRERAIFEAGITLGAIYHQFCG 32 (131) T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHEECC T ss_conf 345420882888888630123013311036 No 290 >1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 Probab=49.83 E-value=10 Score=15.94 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=27.0 Q ss_pred CCH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 973-7799999999999987281036579999985778778999 Q T0611 1 MTM-KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 1 ~~~-~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~ 43 (227) |.| +||-.+---++-.++.+ ..+|.++||+..|+|+..+.. T Consensus 1 m~mis~r~~~Al~~L~~La~~--~~~ts~~IAe~~~i~~~~l~k 42 (145) T 1xd7_A 1 MSLINSRLAVAIHILSLISMD--EKTSSEIIADSVNTNPVVVRR 42 (145) T ss_dssp -----CHHHHHHHHHHHHHTC--SCCCHHHHHHHHTSCHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHH T ss_conf 953338999999999998549--998999999886939999999 No 291 >3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} Probab=49.30 E-value=10 Score=15.89 Aligned_cols=31 Identities=10% Similarity=0.137 Sum_probs=23.9 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 99999999987281036579999985778778999834 Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .|+.|++.+. +...+|+.+|||.++++...+ T Consensus 3 ~i~~AI~~~G-------~q~~LAr~lGvsq~~Vs~W~~ 33 (79) T 3bd1_A 3 AIDIAINKLG-------SVSALAASLGVRQSAISNWRA 33 (79) T ss_dssp HHHHHHHHHS-------SHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHC-------CHHHHHHHHCCCHHHHHHHHC T ss_conf 8999999968-------999999991998999999881 No 292 >1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=49.30 E-value=8.9 Score=16.33 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=17.4 Q ss_pred CHHHHHHHHCCCHHHHHHH Q ss_conf 5799999857787789998 Q T0611 26 TTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 26 t~~~IA~~aGvs~gtlY~~ 44 (227) |...+|+.+|||+.++|.. T Consensus 12 ~~~kLA~~lGis~~aVsqW 30 (61) T 1rzs_A 12 TQRAVAKALGISDAAVSQW 30 (61) T ss_dssp SHHHHHHHHTCCHHHHHHC T ss_pred CHHHHHHHHCCCHHHHHHC T ss_conf 8999999929999999872 No 293 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=49.29 E-value=10 Score=15.89 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+++.|.+. T Consensus 71 ~~~vsr~l~~L~~~gli~ 88 (155) T 3cdh_A 71 QSRMTRIVDQMDARGLVT 88 (155) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 989999999999789868 No 294 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=49.20 E-value=10 Score=15.88 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 9999999999986598889 Q T0611 123 LAAINRIFAKLADAGIIQP 141 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~~ 141 (227) ...+..++..+++.|.+.- T Consensus 61 ~~~vs~~i~~L~~~gli~~ 79 (145) T 2a61_A 61 KSTVTGLVKRLEADGYLTR 79 (145) T ss_dssp HHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHHCCCCEEE T ss_conf 8899999999972468664 No 295 >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Probab=49.06 E-value=8.7 Score=16.42 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=26.7 Q ss_pred HHHHHC-CC-CCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999872-81-0365799999857787789998344899 Q T0611 15 ELFNDK-GE-RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 15 ~lf~e~-G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ..|... -| ....+.+||+.+|++...|...|.+|.. T Consensus 17 ~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WF~NrR~ 54 (64) T 1x2m_A 17 KVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN 54 (64) T ss_dssp HHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 99998389998999999999949985899997587675 No 296 >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=49.04 E-value=8.2 Score=16.61 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.2 Q ss_pred HHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999998728103-65799999857787789998344899 Q T0611 13 SLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 13 A~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -.+.|.+.-|-. ..+..||..+|++...|-.+|.|+.. T Consensus 26 Le~~f~~~~~P~~~~~~~La~~~gL~~~~V~~WF~NrR~ 64 (89) T 2ecb_A 26 LQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 64 (89) T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999869999999999998858789999997999988 No 297 >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Probab=49.00 E-value=10 Score=15.86 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=30.6 Q ss_pred HHHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999999872810365-799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ++.--..|....|-+.. ...||.+.|+|...|..+|.|+.. T Consensus 15 ~~~Le~~F~~n~~Ps~~~~~~La~~lgl~~~~V~~WFqNrR~ 56 (66) T 1bw5_A 15 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC 56 (66) T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999998779989999999999949398995570352888 No 298 >2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus} Probab=48.94 E-value=10 Score=15.85 Aligned_cols=18 Identities=17% Similarity=0.480 Sum_probs=7.6 Q ss_pred HHHHHHHCCCCCCCHHHH Q ss_conf 999998659888993889 Q T0611 129 IFAKLADAGIIQPQPEDL 146 (227) Q Consensus 129 ~l~~~i~~G~l~~~~~~~ 146 (227) ++..+-+.|.+..+..++ T Consensus 37 lI~~LD~~GyL~~~~~ei 54 (76) T 2k9l_A 37 LLNYLNEKGFLSKSVEEI 54 (76) T ss_dssp HHHHCTTSSTTCCCHHHH T ss_pred HHHHCCCCCCCCCCHHHH T ss_conf 997459888758899999 No 299 >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Probab=47.76 E-value=11 Score=15.72 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999998728103-65799999857787789998344899 Q T0611 9 ILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 9 Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -+++--..|.+..|-. .....||..+|++...|-..|.|+.. T Consensus 14 Ql~~Le~~F~~n~~Ps~~~r~~LA~~lgl~~~qV~~WFqNrR~ 56 (61) T 2hdd_A 14 QLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61) T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHH T ss_conf 9999999998779989999999999979698996672443676 No 300 >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} Probab=47.70 E-value=11 Score=15.71 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHH Q ss_conf 799999999999987281036579999985-----77877899983 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHL-----AISPGNLYYHF 45 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~a-----Gvs~gtlY~~F 45 (227) |++|+. =++++.+.+ ...|.++|.+.+ .+|++|+|+-- T Consensus 10 T~qR~~--Il~~l~~~~-~~~sa~ei~~~l~~~~~~i~~~TVYR~L 52 (131) T 2o03_A 10 TRQRAA--ISTLLETLD-DFRSAQELHDELRRRGENIGLTTVYRTL 52 (131) T ss_dssp HHHHHH--HHHHHHHCC-SCEEHHHHHHHHHHTTCCCCHHHHHHHH T ss_pred CHHHHH--HHHHHHHCC-CCCCHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 999999--999998189-9989999999999758999888999999 No 301 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=47.33 E-value=9.7 Score=16.07 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=15.0 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHCC Q ss_conf 712189889999999999854102 Q T0611 193 EVPYLTPEYRERVLALREKYRPTL 216 (227) Q Consensus 193 l~p~lt~~~~~~l~~l~~~~~~~l 216 (227) +...++++..+.+..+..++...+ T Consensus 115 ~~~~l~~ee~~~l~~~L~kl~~~l 138 (139) T 3bja_A 115 NCGCFTKEEEGILEDLLLKWKKHL 138 (139) T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHHHHC T ss_conf 985899999999999999999866 No 302 >3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A Probab=47.10 E-value=11 Score=15.65 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=30.1 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHH Q ss_conf 036579999985778778999834-489999999999999999987 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFR-NKSDIIYEIFQEYEKLVDYYL 67 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~-sKe~Ll~av~~~~~~~~~~~~ 67 (227) .+.|++++|++.|||+++|=..+. +|-..=...+..+.+.+.-.+ T Consensus 242 RGLTL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL~V~l 287 (443) T 3g7d_A 242 RAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDY 287 (443) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCG T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH T ss_conf 1888999998869899999999856888988999999999729999 No 303 >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Probab=46.95 E-value=8.8 Score=16.39 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=28.3 Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999998728103-65799999857787789998344899 Q T0611 11 LSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 11 ~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +.-...|.+.-|-. ..+..||.++|++...|-.+|.|+.. T Consensus 20 ~~Le~~F~~~~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 60 (70) T 2da2_A 20 RVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQ 60 (70) T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999869999999999999979699996895398688 No 304 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=46.86 E-value=11 Score=15.62 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+...+..+++.|.+. T Consensus 72 ~~~vs~~i~~L~~~g~i~ 89 (154) T 2eth_A 72 KSNVTNVVDSLEKRGLVV 89 (154) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 879999999999888913 No 305 >1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.195.1.1 Probab=46.84 E-value=11 Score=15.62 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=24.9 Q ss_pred CCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 9737--799999999999987281036579999985 Q T0611 1 MTMK--TRDKILLSSLELFNDKGERNITTNHIAAHL 34 (227) Q Consensus 1 ~~~~--TR~~Il~aA~~lf~e~G~~~~t~~~IA~~a 34 (227) |.|+ |.....+.+.+++.++| +|+++||+-+ T Consensus 1 ~~~~ky~~~e~~~~~~~~L~eRG---Vtl~DIa~iv 33 (189) T 1tlq_A 1 MSLKKYTMNEMVDITKDMLNKRG---VMIEDIARIV 33 (189) T ss_dssp -----CCHHHHHHHHHHHHHHTT---CCHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHH T ss_conf 97531567999999999999859---8499999999 No 306 >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Probab=46.82 E-value=8.8 Score=16.39 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=8.8 Q ss_pred CCCHHHHHHH-HCCCHHHHHH Q ss_conf 3657999998-5778778999 Q T0611 24 NITTNHIAAH-LAISPGNLYY 43 (227) Q Consensus 24 ~~t~~~IA~~-aGvs~gtlY~ 43 (227) +++=...|+. .|.|.|++=. T Consensus 21 ~I~Q~~fa~~vl~~SQgtlS~ 41 (164) T 2d5v_A 21 SIPQAIFAQRVLCRSQGTLSD 41 (164) T ss_dssp TCCHHHHHHHHTSCCHHHHHH T ss_pred CCCHHHHHHHHHCCCCHHHHH T ss_conf 875999998700578517778 No 307 >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... Probab=46.75 E-value=11 Score=15.61 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 799999999999987281036579999985778778999834 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) |.|.-|.+=.++-.+.| .++..+||+.+|||++++....+ T Consensus 7 ~~EdYL~~Iy~l~~~~~--~~~~~~iA~~L~vs~~svt~~l~ 46 (226) T 2qq9_A 7 TTEMYLRTIYELEEEGV--TPLRARIAERLEQSGPTVSQTVA 46 (226) T ss_dssp HHHHHHHHHHHHHHHTC--CCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 39999999999986499--77299999996899079999999 No 308 >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=46.73 E-value=11 Score=15.61 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=28.6 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999998728103-65799999857787789998344899 Q T0611 10 LLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) |+.-...|...-|-. ....+||..+|++...|-..|.++.. T Consensus 15 l~~Le~~F~~n~~P~~~~~~~La~~lgL~~~~V~~WFqNrRa 56 (64) T 2e19_A 15 LSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC T ss_conf 999999998479969999999999988099996697331203 No 309 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=46.44 E-value=11 Score=15.58 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999999986598889938 Q T0611 122 CLAAINRIFAKLADAGIIQPQPE 144 (227) Q Consensus 122 ~~~~~~~~l~~~i~~G~l~~~~~ 144 (227) ....+..++..+++.|.+....+ T Consensus 76 ~~~~vs~~l~~L~~~glI~r~~~ 98 (162) T 2fa5_A 76 DKVAVSRAVARLLERGFIRRETH 98 (162) T ss_dssp CHHHHHHHHHHHHHTTSEEC--- T ss_pred CCCCHHHHHHHHHHCCCEEECCC T ss_conf 65719999999982898730467 No 310 >1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A* Probab=45.87 E-value=11 Score=15.74 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.4 Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHHH Q ss_conf 6579999985778778999834489999 Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227) -|+.++|+-.|||+.||-|| +|.+|+ T Consensus 6 ytIge~ak~~gis~~tLRyY--d~~GLl 31 (278) T 1r8e_A 6 YSIGEVSKLANVSIKALRYY--DKIDLF 31 (278) T ss_dssp EEHHHHHHHHTCCHHHHHHH--HHTTSS T ss_pred EEHHHHHHHHCCCHHHHHHH--HHCCCC T ss_conf 20999999988598999999--978998 No 311 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=45.54 E-value=12 Score=15.48 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 99999999999865988899388999999999999999887765531002200010899999999999987121898899 Q T0611 123 LAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLTPEYR 202 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p~lt~~~~ 202 (227) ...+...+..+.+.|.+...+++.+.... .+. .++........+.........-+..-++++.. T Consensus 82 ~~tvsr~v~~Le~~GlV~r~~d~~D~R~~-~l~---------------LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~ 145 (166) T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAK-RIK---------------LTEKAEPLIAEMEEVIHKTRGEILAGISSEEI 145 (166) T ss_dssp HHHHHHHHHHHHHTTSEEEC--------C-EEE---------------ECGGGHHHHHHHHHHHHHHHHHHHTTCCHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCEE-EEE---------------ECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 98999999999969887986206898757-889---------------89889999999999999999999838999999 Q ss_pred HHHHHHHHHHHHCCHH Q ss_conf 9999999985410201 Q T0611 203 ERVLALREKYRPTLPE 218 (227) Q Consensus 203 ~~l~~l~~~~~~~l~~ 218 (227) +.+..+.+++...+.. T Consensus 146 ~~l~~~L~~l~~nl~~ 161 (166) T 3deu_A 146 ELLIKLIAKLEHNIME 161 (166) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 312 >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=45.50 E-value=12 Score=15.48 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999998728103-65799999857787789998344899 Q T0611 9 ILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 9 Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -+++-...|.+..|-. .....||..+|++...|-.+|.|+.. T Consensus 18 Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 60 (70) T 2dmu_A 18 QLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRA 60 (70) T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999999999779998799999999967988890363166366 No 313 >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Probab=45.42 E-value=12 Score=15.47 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 99999999987281-0365799999857787789998 Q T0611 9 ILLSSLELFNDKGE-RNITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 9 Il~aA~~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~ 44 (227) +=+--++.+.+.|- ..+|..+||+..|++|..+.++ T Consensus 15 ~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~ 51 (77) T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77) T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH T ss_conf 8999999999658987602999999969888888999 No 314 >1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Probab=45.42 E-value=12 Score=15.47 Aligned_cols=40 Identities=25% Similarity=0.185 Sum_probs=20.7 Q ss_pred HHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 79999999999-998728103657999998577877899983 Q T0611 5 TRDKILLSSLE-LFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 5 TR~~Il~aA~~-lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) +++.|+.|.+= ...++|. ..|+++|++..++++..+...| T Consensus 46 ~~~~i~aAciy~acR~~~~-prtl~eia~~~~~~~k~l~k~~ 86 (207) T 1c9b_A 46 ANDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGRCF 86 (207) T ss_dssp CHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHH T ss_conf 6352999789999998289-8739999999788899999999 No 315 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=45.33 E-value=11 Score=15.76 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 9999999999986598889 Q T0611 123 LAAINRIFAKLADAGIIQP 141 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~~ 141 (227) ...+...+..+.+.|.+.. T Consensus 64 ~~tvs~~l~~L~~~glI~r 82 (140) T 3hsr_A 64 SGTLTPLLKKLEKKDYVVR 82 (140) T ss_dssp HHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHHHCCCEEE T ss_conf 8689999999981795698 No 316 >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=44.15 E-value=12 Score=15.33 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999987281036-5799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ++.--..|....|-.. ....||..+|++...|-..|.|+.. T Consensus 19 ~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 60 (70) T 2e1o_A 19 TIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA 60 (70) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999998869999999999999959898896696076538 No 317 >1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A Probab=44.07 E-value=12 Score=15.32 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=22.9 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 9987281036579999985778778999834 Q T0611 16 LFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 16 lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) ...+.|+ |=.+||+++|+|+++|.++.. T Consensus 19 ~l~~~G~---tq~~iA~~lg~srs~VS~~lr 46 (192) T 1zx4_A 19 RMKNDGM---SQKDIAAKEGLSQAKVTRALQ 46 (192) T ss_dssp HHHHTTC---CHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCC---CHHHHHHHHCCCHHHHHHHHH T ss_conf 9998799---999999998979999999999 No 318 >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=42.94 E-value=12 Score=15.33 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=29.2 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999987281036-5799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) |+.--..|...-|-.. ....||...|++...|..+|.++.. T Consensus 17 l~~Le~~F~~n~~Ps~~~~~~La~~~~L~~~~V~~WFqNrR~ 58 (71) T 2da7_A 17 MSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999999998668878999999999808989999999998574 No 319 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Probab=42.62 E-value=13 Score=15.17 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999998659888 Q T0611 124 AAINRIFAKLADAGIIQ 140 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227) ..+...+..+++.|.+. T Consensus 65 ~~vsr~v~~L~~~g~i~ 81 (146) T 2gxg_A 65 SAITASVDKLEEMGLVV 81 (146) T ss_dssp HHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 69999999998789979 No 320 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=42.46 E-value=13 Score=15.15 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+..++..+.+.|.+. T Consensus 66 ~~~vsr~l~~L~~~glv~ 83 (140) T 2nnn_A 66 AATIKGVVERLDKRGLIQ 83 (140) T ss_dssp HHHHHHHHHHHHHTTCEE T ss_pred CCCHHHHHHHHHHCCCEE T ss_conf 362999999997099669 No 321 >2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.08A {Picrophilus torridus dsm 9790} SCOP: d.316.1.1 Probab=42.34 E-value=7.4 Score=16.94 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=19.7 Q ss_pred HCCCCCCCHHHHH-HHHCCCHHHHHHHHCC Q ss_conf 7281036579999-9857787789998344 Q T0611 19 DKGERNITTNHIA-AHLAISPGNLYYHFRN 47 (227) Q Consensus 19 e~G~~~~t~~~IA-~~aGvs~gtlY~~F~s 47 (227) ++=| ++|=++-| =++||+-|+|||-|-+ T Consensus 7 ~kYF-n~TdrerA~FEaGIklGaLyHQFvG 35 (121) T 2i52_A 7 EKYF-NCTDIQRAFFEAGIKLGAIFHQYTG 35 (121) T ss_dssp GGGC-CSCHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHC-CCCCHHHHHHHHHHHHHHHHHEECC T ss_conf 8865-7983889887530113003202126 No 322 >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Probab=41.73 E-value=13 Score=15.07 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=31.6 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999998728103-65799999857787789998344899 Q T0611 10 LLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +.+--..|....|-. ....+||..+|++...|-..|.|+.. T Consensus 15 ~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~vWFqNrR~ 56 (63) T 2h1k_A 15 LLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM 56 (63) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHEECCHHHHH T ss_conf 999999998679979999999999968592571022675645 No 323 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=41.72 E-value=13 Score=15.07 Aligned_cols=26 Identities=4% Similarity=0.105 Sum_probs=18.7 Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 98728103657999998577877899 Q T0611 17 FNDKGERNITTNHIAAHLAISPGNLY 42 (227) Q Consensus 17 f~e~G~~~~t~~~IA~~aGvs~gtlY 42 (227) |.=.|....|+++||+..|||+.-+- T Consensus 31 fGl~~~~~~Tl~eI~~~lgiSrerVR 56 (87) T 1tty_A 31 YGLLDGKPKTLEEVGQYFNVTRERIR 56 (87) T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 17789995669999999698899999 No 324 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=41.67 E-value=13 Score=15.07 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCC Q ss_conf 999999999999865988899 Q T0611 122 CLAAINRIFAKLADAGIIQPQ 142 (227) Q Consensus 122 ~~~~~~~~l~~~i~~G~l~~~ 142 (227) ....+..++..+.+.|.+.-. T Consensus 74 ~~~tvs~~v~~L~~~Glv~r~ 94 (153) T 2pex_A 74 DSATLTPLLKRLQAAGLVTRT 94 (153) T ss_dssp CHHHHHHHHHHHHHTTSEEEE T ss_pred CHHHHHHHHHHHHHCCCEEEE T ss_conf 886999999999988998983 No 325 >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Probab=41.00 E-value=13 Score=15.00 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 79999999999998728103657999998577877899983 Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) |-|..|.+=.++-.+.+ .++..+||+.+|||++++..-. T Consensus 7 ~~EdYL~~Iy~l~~~~~--~v~~~~lA~~L~vs~~svt~~l 45 (230) T 1fx7_A 7 TTEMYLRTIYDLEEEGV--TPLRARIAERLDQSGPTVSQTV 45 (230) T ss_dssp HHHHHHHHHHHHHHHTS--CCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCCHHHHHHH T ss_conf 89999999999984499--7519999999789916899999 No 326 >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 Probab=40.98 E-value=12 Score=15.42 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=14.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHH Q ss_conf 18988999999999985410201 Q T0611 196 YLTPEYRERVLALREKYRPTLPE 218 (227) Q Consensus 196 ~lt~~~~~~l~~l~~~~~~~l~~ 218 (227) .++++.++.+..+.++....+++ T Consensus 157 ~l~~ee~~~l~~~L~~l~~~le~ 179 (181) T 2fbk_A 157 PLSAQEQRTLEELAGRMLAGLEQ 179 (181) T ss_dssp TSCTTHHHHHHHHHHHHHHHHCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHC T ss_conf 79999999999999999998876 No 327 >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Probab=40.25 E-value=14 Score=14.91 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=30.9 Q ss_pred HHHHHHHHH-CCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 999999987-281-03657999998577877899983448999 Q T0611 11 LSSLELFND-KGE-RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 11 ~aA~~lf~e-~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +.--..|.. ..| ......+||...|++...|--.|.|+..= T Consensus 14 ~~Le~~F~~~~~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak 56 (72) T 1uhs_A 14 EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72) T ss_dssp HHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9999999863343899999999999099699999879999999 No 328 >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2 Probab=39.76 E-value=14 Score=14.86 Aligned_cols=10 Identities=20% Similarity=-0.180 Sum_probs=3.9 Q ss_pred HHCCCHHHHH Q ss_conf 4126889999 Q T0611 104 LLDSDPRLRQ 113 (227) Q Consensus 104 ~~~~~~~l~~ 113 (227) +...+|.+.. T Consensus 130 l~~~~~~~~~ 139 (232) T 1zyb_A 130 DLFRYDIFRL 139 (232) T ss_dssp TGGGSHHHHH T ss_pred HHHHHHHHHH T ss_conf 2335899999 No 329 >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Probab=39.57 E-value=14 Score=14.86 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=25.6 Q ss_pred HHHHHC-C-CCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999872-8-10365799999857787789998344899 Q T0611 15 ELFNDK-G-ERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 15 ~lf~e~-G-~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ..|... - .....+.+||.++|++...|-..|.+|.. T Consensus 25 ~~f~~~~~~P~~~~~~~LA~~l~l~~~qV~~WF~NrR~ 62 (72) T 2cqx_A 25 KVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 62 (72) T ss_dssp HHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99988689979999999999958986889999987698 No 330 >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=39.42 E-value=14 Score=14.82 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=30.9 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999987281036-5799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +.+--..|.+.-|-.. ....||+++|++...|..+|.+|.. T Consensus 19 ~~~Le~~F~~~~~P~~~~~~~La~~l~L~~~qV~~WFqNrR~ 60 (80) T 2dmq_A 19 LRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA 60 (80) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999999998769989999999998708998996793297799 No 331 >2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8 Probab=38.42 E-value=5.1 Score=18.17 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=32.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC--CHHHHHH Q ss_conf 737799999999999987281036579999985778778999834--4899999 Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR--NKSDIIY 53 (227) Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~--sKe~Ll~ 53 (227) .|++|.+|+. .+.- .++.|-++||+++|+|+.++-++-. -+.+|+. T Consensus 18 ~~~~R~~il~---~lyy---~~~l~q~eIA~~lg~Sr~~V~r~l~~ar~~GiV~ 65 (345) T 2o0m_A 18 VLQERFQILR---NIYW---MQPIGRRSLSETMGITERVLRTETDVLKQLNLIE 65 (345) T ss_dssp ------------------------------------------------------ T ss_pred HHHHHHHHHH---HHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE T ss_conf 9999999999---9986---1898999999886998889999999999879889 No 332 >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=38.19 E-value=14 Score=14.94 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=32.3 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHHHHH Q ss_conf 9999999987281036-5799999857787789998344899999 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSDIIY 53 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~Ll~ 53 (227) +..--..|.+.-|-.. ...+||.++|++...|-..|.++..-.. T Consensus 19 l~~Le~~F~~~~~P~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~k 63 (80) T 2cue_A 19 IEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 63 (80) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH T ss_conf 999999999867777999999999929999998774024407887 No 333 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=37.81 E-value=15 Score=14.65 Aligned_cols=17 Identities=6% Similarity=0.462 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999998659888 Q T0611 124 AAINRIFAKLADAGIIQ 140 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227) ..+..++..+++.|.+. T Consensus 66 ~~vs~~l~~L~~~glv~ 82 (142) T 2bv6_A 66 GTVSPLLKRMEQVDLIK 82 (142) T ss_dssp TTHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 37999999998589889 No 334 >3cmy_A HUP2, paired box protein PAX-3; DNA-binding protein, DNA, transcription regulation; 1.95A {Homo sapiens} PDB: 3lnq_A Probab=37.63 E-value=15 Score=14.63 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=30.6 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999998728103-65799999857787789998344899 Q T0611 10 LLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ++.-...|.+..|-. .+...||..+|++...|-..|.||.. T Consensus 14 ~~~Le~~F~~~~~Ps~~~~~~La~~lgl~~~~V~~WFqNrRa 55 (61) T 3cmy_A 14 LEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRA 55 (61) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999998679989999999999969397884681276677 No 335 >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Probab=37.57 E-value=15 Score=14.62 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=30.3 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999987281036-5799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +++--..|.+.-|-.. ...+||...|++...|-..|.|+.. T Consensus 13 l~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~~WFqNrR~ 54 (67) T 2k40_A 13 IEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRA 54 (67) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999789988789999999929898991250186779 No 336 >1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12 Probab=37.44 E-value=15 Score=14.61 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=11.7 Q ss_pred CCHHHHHHHHCCCHHHHHH Q ss_conf 6579999985778778999 Q T0611 25 ITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~ 43 (227) -|.|.+|+++|+|+.++-+ T Consensus 34 PStRqLAkrLg~SHTaiAN 52 (61) T 1g2h_A 34 PSTRKLAQRLGVSHTAIAN 52 (61) T ss_dssp CSHHHHHHHTTSCTHHHHH T ss_pred CCHHHHHHHHCCCHHHHHH T ss_conf 7389999995861899998 No 337 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=37.05 E-value=15 Score=14.57 Aligned_cols=29 Identities=7% Similarity=-0.101 Sum_probs=16.5 Q ss_pred HHCCCHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 12189889999999999854102014763 Q T0611 194 VPYLTPEYRERVLALREKYRPTLPEAQGI 222 (227) Q Consensus 194 ~p~lt~~~~~~l~~l~~~~~~~l~~~~~~ 222 (227) ...++++....+..+..+....++..++. T Consensus 129 ~~~l~~~e~~~l~~~L~~l~~~l~~~~~~ 157 (162) T 3k0l_A 129 LQGVDINLAFLIRNNLELMVKNLSTFSSL 157 (162) T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTCC---- T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 83899999999999999999999870521 No 338 >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=37.00 E-value=15 Score=14.56 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999998728103-6579999985778778999834489 Q T0611 9 ILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 9 Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ||+.-+..+..+.|-. .....||+..|+|+.-|-..|.++. T Consensus 21 ~L~~~f~~~~~npyP~~~ek~~La~~~gLs~~qI~~WF~N~R 62 (73) T 1x2n_A 21 VMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINAR 62 (73) T ss_dssp HHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999986527997999999999998878999999999999 No 339 >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Probab=36.76 E-value=16 Score=14.53 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=19.8 Q ss_pred HHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999872810365-799999857787789998344899 Q T0611 12 SSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 12 aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) .--.+|.+.-|-..- ..+||..+|++...|-..|.||.. T Consensus 48 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~vWFqNrR~ 87 (97) T 1b72_A 48 ELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 87 (97) T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHH T ss_conf 9999999879987889999888609996671122798988 No 340 >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Probab=36.69 E-value=16 Score=14.53 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHHH-C-CCCCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 799999999999987-2-810365799999857787789998344899 Q T0611 5 TRDKILLSSLELFND-K-GERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 5 TR~~Il~aA~~lf~e-~-G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) |.++ ++.--.+|.. . =-.......||..+|++...|-.+|.+|.. T Consensus 10 T~~Q-l~~Le~~F~~~~~yP~~~~r~~LA~~lgL~~~qV~~WFqNrRa 56 (73) T 2hi3_A 10 TEDQ-VEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 56 (73) T ss_dssp CHHH-HHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999-9999999978589939999999999959988896894498768 No 341 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=36.32 E-value=16 Score=14.48 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+...+..+.+.|.+. T Consensus 80 ~~~vs~~l~~L~~~glv~ 97 (162) T 3cjn_A 80 QSTLSRALDGLQADGLVR 97 (162) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 889999999999489879 No 342 >2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} Probab=35.46 E-value=16 Score=14.39 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.2 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 36579999985778778999834489 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) -.|+.++|+.+|||+.+++..-++.. T Consensus 31 ~lt~~evA~~LGvs~~~V~~~i~~g~ 56 (148) T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGH 56 (148) T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTS T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCC T ss_conf 34899999996988899999998794 No 343 >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=35.28 E-value=16 Score=14.37 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=25.4 Q ss_pred HHHHHH-CCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999987-281-0365799999857787789998344899 Q T0611 14 LELFND-KGE-RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 14 ~~lf~e-~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -+.|.+ .-| ..-...+||.++|++...|-..|.|+.. T Consensus 23 e~~F~~~~~~P~~~~~~~La~~~gl~~~qI~~WF~NrR~ 61 (71) T 1wi3_A 23 QSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71) T ss_dssp HHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999998267788999999987827889999998487887 No 344 >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Probab=34.72 E-value=17 Score=14.31 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=30.5 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999987281036-5799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ++.-...|....|-.. ....||.++|++...|-.+|.++.. T Consensus 19 ~~~Le~~F~~~~~Ps~~~~~~La~~l~l~~~qV~~WF~NrR~ 60 (70) T 2da1_A 19 LRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLF 60 (70) T ss_dssp HHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999749989899999999837989993570287788 No 345 >1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 2gxb_A 2acj_A Probab=34.41 E-value=17 Score=14.27 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=26.2 Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999999987281-0365799999857787789998 Q T0611 10 LLSSLELFNDKGE-RNITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 10 l~aA~~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~ 44 (227) =+--++.+.+.|- ..+|..+||+..|++|..+.++ T Consensus 12 e~~Il~~L~~lg~g~~~tA~~LAk~lgv~Kk~vN~~ 47 (81) T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81) T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH T ss_conf 999999998548997510999999969888898999 No 346 >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=34.39 E-value=17 Score=14.27 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 99999999987281036-579999985778778999834489 Q T0611 9 ILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) -++.-...|....|-.. ....||..+|++...|-..|.|+. T Consensus 18 Q~~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70) T 2djn_A 18 QLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKR 59 (70) T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHH T ss_conf 999999999987875488999999985998425215570256 No 347 >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Probab=33.90 E-value=17 Score=14.21 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=19.5 Q ss_pred CCCCC-CCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 28103-657999998577877899983448 Q T0611 20 KGERN-ITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 20 ~G~~~-~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) ..|.. ....+||...|+|+.-|...|.++ T Consensus 28 nPyP~~~~k~~La~~~gls~~qV~~WF~N~ 57 (64) T 1du6_A 28 NPYPSEEAKEELAKKCGITVSQVSNWFGNK 57 (64) T ss_dssp SCCCCHHHHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 899899999999999886888989968998 No 348 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Probab=33.74 E-value=17 Score=14.20 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 9999999999987281036579999985778778999834 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227) .+++--+..+.-.. +.|-.+||+++|+|+.++-++-. T Consensus 7 ~~ll~~vA~lYY~~---gltQ~eIA~~lgiSR~~VsRlL~ 43 (315) T 2w48_A 7 IRLIVKIAQLYYEQ---DMTQAQIARELGIYRTTISRLLK 43 (315) T ss_dssp HHHHHHHHHHHHTS---CCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999834---99999999986989999999999 No 349 >3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* Probab=32.75 E-value=18 Score=14.08 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCHHHHH Q ss_conf 799999999999987281---03657999998577877899 Q T0611 5 TRDKILLSSLELFNDKGE---RNITTNHIAAHLAISPGNLY 42 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~---~~~t~~~IA~~aGvs~gtlY 42 (227) .+++|.+.=.+.+....| ...+-+++|++.|||+..+- T Consensus 21 l~e~vy~~i~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVR 61 (226) T 3dbw_A 21 VRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVR 61 (226) T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCHHHHHHHHTCCHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 99999999999998499998097799999999891999999 No 350 >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Probab=32.57 E-value=18 Score=14.06 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=20.7 Q ss_pred HHHHHCC----CCCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9998728----1036579999985778778999834489 Q T0611 15 ELFNDKG----ERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 15 ~lf~e~G----~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ..|..+. -..-....||...|++...|..+|.++. T Consensus 44 ~~f~~~~~~PYPs~~~~~~La~~~gL~~~qV~~WF~N~R 82 (87) T 1mnm_C 44 SWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 82 (87) T ss_dssp HHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 999975898995999999999998829999989888631 No 351 >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Probab=32.55 E-value=18 Score=14.06 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=30.0 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 999999998728103-657999998577877899983448999 Q T0611 10 LLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 10 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +.+--..|.+..|-. -....||..+|++...|-..|.|+..= T Consensus 14 l~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFQNrR~k 56 (68) T 1zq3_P 14 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 56 (68) T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9999999987788878899999999087589999980668988 No 352 >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 Probab=32.46 E-value=18 Score=14.05 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHHHHCCCC---CCCHHHHHHHHCCCHHHHHHH Q ss_conf 7999999999999872810---365799999857787789998 Q T0611 5 TRDKILLSSLELFNDKGER---NITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~---~~t~~~IA~~aGvs~gtlY~~ 44 (227) +.++|.+.=.+.+....|. ..|-++||++.|||++++-.= T Consensus 29 ~~e~v~~~Lr~~I~~g~l~pG~~L~E~~La~~~gVSRtpVREA 71 (239) T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREA 71 (239) T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999999999809999909828999999989597999999 No 353 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=32.34 E-value=18 Score=14.04 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=14.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHH Q ss_conf 0365799999857787789998 Q T0611 23 RNITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~ 44 (227) .++|+.+||+..+++++++..- T Consensus 61 ~~~t~~ela~~~~~~~stvs~~ 82 (207) T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNF 82 (207) T ss_dssp TSEEHHHHHHHTTCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9989999999988887279999 No 354 >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Probab=32.23 E-value=18 Score=14.02 Aligned_cols=37 Identities=5% Similarity=-0.030 Sum_probs=24.6 Q ss_pred HHHHHHHCC---C-CCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 999998728---1-036579999985778778999834489 Q T0611 13 SLELFNDKG---E-RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 13 A~~lf~e~G---~-~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) --..|.++. | ...-...||...|++...|...|.|+. T Consensus 17 Le~~f~~~~~nPYPs~~~~~~La~~~gl~~~qV~~WF~N~R 57 (83) T 1le8_B 17 LESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARR 57 (83) T ss_dssp HHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999983789997999999999998829999999899988 No 355 >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Probab=31.73 E-value=18 Score=13.97 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 99999999987281036-57999998577877899983448999 Q T0611 9 ILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) -+++--..|.+..|-.. ...+||..+|++...|-..|.++..= T Consensus 18 Ql~~Le~~F~~n~~P~~~~~~~LA~~lgl~~~~I~~WFqNrR~k 61 (80) T 2dms_A 18 QLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61 (80) T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999999998887538999999998299978914620656888 No 356 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=31.51 E-value=19 Score=13.94 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=13.8 Q ss_pred HCCCHHHHHHHHHHHHHHHHCCH Q ss_conf 21898899999999998541020 Q T0611 195 PYLTPEYRERVLALREKYRPTLP 217 (227) Q Consensus 195 p~lt~~~~~~l~~l~~~~~~~l~ 217 (227) ..++++..+.+..+..+....++ T Consensus 137 ~~ls~~e~~~l~~~L~~l~~nl~ 159 (161) T 3e6m_A 137 GNVDPDKLQTCIEVLGEILKGKT 159 (161) T ss_dssp TTCCHHHHHHHHHHHHHHHHHTC T ss_pred HCCCHHHHHHHHHHHHHHHHHHH T ss_conf 57999999999999999997565 No 357 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=30.97 E-value=19 Score=13.88 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999998659888 Q T0611 124 AAINRIFAKLADAGIIQ 140 (227) Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227) ..+...+..+.+.|.+. T Consensus 63 ~tvs~~v~~L~~~g~i~ 79 (138) T 1jgs_A 63 GALTRMLDRLVCKGWVE 79 (138) T ss_dssp HHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 68999999998689879 No 358 >3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} Probab=30.94 E-value=19 Score=13.87 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCHHHHH Q ss_conf 799999999999987281---03657999998577877899 Q T0611 5 TRDKILLSSLELFNDKGE---RNITTNHIAAHLAISPGNLY 42 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~---~~~t~~~IA~~aGvs~gtlY 42 (227) +|+.|.+.=.+.+...-| ...+-++||++.|||++++- T Consensus 27 ~~~~v~~~lr~~I~~g~l~pG~~L~e~~La~~~gvSRtpVR 67 (237) T 3c7j_A 27 ARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVR 67 (237) T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH T ss_conf 89999999999998299998097599999998794969999 No 359 >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Probab=30.46 E-value=19 Score=13.82 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=31.3 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 9999999987281036-5799999857787789998344899 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) +++--..|.+..|-+. ...+||..+|++...|--+|.|+.. T Consensus 13 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 54 (60) T 1jgg_A 13 LGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60) T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHH T ss_conf 999999998779999899999999959895472132832667 No 360 >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Probab=30.45 E-value=19 Score=13.82 Aligned_cols=12 Identities=17% Similarity=-0.100 Sum_probs=5.4 Q ss_pred HCCCHHHHHHHH Q ss_conf 218988999999 Q T0611 195 PYLTPEYRERVL 206 (227) Q Consensus 195 p~lt~~~~~~l~ 206 (227) |+.+++.+..+. T Consensus 124 ~~Ps~~~~~~lA 135 (160) T 1e3o_C 124 QKPTSEDITLIA 135 (160) T ss_dssp SSCCHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 999999999999 No 361 >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} Probab=30.14 E-value=20 Score=13.78 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=10.3 Q ss_pred CCHHHHHHHH-----CCCHHHHHHH Q ss_conf 6579999985-----7787789998 Q T0611 25 ITTNHIAAHL-----AISPGNLYYH 44 (227) Q Consensus 25 ~t~~~IA~~a-----Gvs~gtlY~~ 44 (227) .|..+|-+.+ .+|.+|+|+- T Consensus 34 ~ta~eI~~~l~~~~~~i~~~TVYR~ 58 (145) T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRT 58 (145) T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 8999999999975888654889999 No 362 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Probab=30.07 E-value=20 Score=13.77 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=23.6 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9998728103657999998577877899983 Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) ..+.++.=.++|+.+||+..+++++++-+-- T Consensus 41 ~~l~~~~~~~~t~~ela~~l~~~~s~vs~~l 71 (250) T 1p4x_A 41 TYLFHQQENTLPFKKIVSDLCYKQSDLVQHI 71 (250) T ss_dssp HHHHSCSCSEEEHHHHHHHSSSCGGGTHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH T ss_conf 9998479999789999999688832499999 No 363 >1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2 Probab=29.91 E-value=9.3 Score=16.21 Aligned_cols=19 Identities=5% Similarity=0.281 Sum_probs=8.6 Q ss_pred CCCCHHHHHHHHCCCHHHH Q ss_conf 0365799999857787789 Q T0611 23 RNITTNHIAAHLAISPGNL 41 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtl 41 (227) ...|+.+||+..|||+.-+ T Consensus 37 ~~~tl~ei~~~lgvSrerV 55 (81) T 1tlh_B 37 TDYTLEEVGKQFDVTRERI 55 (81) T ss_dssp SCCCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHH T ss_conf 7566999999989789999 No 364 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=28.85 E-value=20 Score=13.63 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+...+..+++.|.+. T Consensus 66 ~~~~s~~v~~L~~~g~I~ 83 (146) T 2fbh_A 66 GPTLARLLDGLESQGLVR 83 (146) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 989999999997289878 No 365 >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} Probab=28.85 E-value=20 Score=13.63 Aligned_cols=38 Identities=8% Similarity=0.007 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHCCCC---CC-CHHHHHHHHCCCHHHHHHH Q ss_conf 99999999999872810---36-5799999857787789998 Q T0611 7 DKILLSSLELFNDKGER---NI-TTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~---~~-t~~~IA~~aGvs~gtlY~~ 44 (227) ++|.+.=.+.+....|. .. |.+++|+..|||+.|+-.= T Consensus 14 ~qI~~~l~~~I~~g~l~~G~~LPs~~~La~~~~VSr~tVr~A 55 (126) T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKA 55 (126) T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999999998599999399955999999979898999999 No 366 >2kt0_A Nanog, homeobox protein nanogp8; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Probab=28.76 E-value=21 Score=13.61 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=26.1 Q ss_pred HHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 999987281036-579999985778778999834489 Q T0611 14 LELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 14 ~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) -..|.+.-|-.. ....||..+|++...|..+|.|+. T Consensus 38 e~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR 74 (84) T 2kt0_A 38 NDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQR 74 (84) T ss_dssp HHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999987999999999999997698557202025478 No 367 >2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1 Probab=28.72 E-value=17 Score=14.23 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.0 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 973779999999999998 Q T0611 1 MTMKTRDKILLSSLELFN 18 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~ 18 (227) |.|=||+.|++.|.+|-. T Consensus 1 ~~~~t~~~I~d~A~eL~~ 18 (151) T 2pih_A 1 MTLYSKKDIVQQARNLAK 18 (151) T ss_dssp -CCBCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 974529999999999999 No 368 >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} Probab=28.46 E-value=21 Score=13.58 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 377999999999999872-810365799999857787789998 Q T0611 3 MKTRDKILLSSLELFNDK-GERNITTNHIAAHLAISPGNLYYH 44 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~-G~~~~t~~~IA~~aGvs~gtlY~~ 44 (227) +.|+.+.==-++-.++.+ +-.-+|.++||++.|+|+..+..- T Consensus 22 ls~k~~YAlral~~LA~~~~~~~vs~~~IAe~~~ip~~~L~KI 64 (159) T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQL 64 (159) T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 8765869999999998088998195999998879099999999 No 369 >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Probab=28.14 E-value=21 Score=13.54 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 999999999987281-036579999985778778999834489 Q T0611 8 KILLSSLELFNDKGE-RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 8 ~Il~aA~~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) +||+..+.-....+| ...-...||...|+|..-|...|.++. T Consensus 11 ~iL~~~f~~~~~~PyPs~~e~~~La~~~gL~~~qV~~WF~N~R 53 (60) T 1k61_A 11 RILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60) T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999975899994999999999997869999999899988 No 370 >1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Probab=28.03 E-value=21 Score=13.53 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH Q ss_conf 9999999999998728103657999998577877 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPG 39 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~g 39 (227) +++|++.-+..+.+- |..+++..||+..|++.. T Consensus 13 ~~~i~Ehni~~is~~-Y~~Isl~~la~~l~l~~~ 45 (84) T 1ufm_A 13 DRAVIEHNLLSASKL-YNNITFEELGALLEIPAA 45 (84) T ss_dssp CHHHHHHHHHHHHHS-CSEEEHHHHHHHTTSCHH T ss_pred HHHHHHHHHHHHHHH-CCEEEHHHHHHHHCCCHH T ss_conf 999999999999985-044559999999597999 No 371 >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Probab=27.63 E-value=21 Score=13.48 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH---HHC--CHHHHHH Q ss_conf 99999999987281036579999985778778999---834--4899999 Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYY---HFR--NKSDIIY 53 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~---~F~--sKe~Ll~ 53 (227) +---.++.+.++|...+|-.+||+.+|++...+-. ||+ +|...-. T Consensus 18 ~Y~r~L~~l~~~g~~~iSS~eLa~~~gi~~~qVRKDls~fG~~G~~G~GY 67 (215) T 2vt3_A 18 LYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGY 67 (215) T ss_dssp HHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC-----E T ss_pred HHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCE T ss_conf 99999999998599479799999996989999998999864379898880 No 372 >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} Probab=27.42 E-value=22 Score=13.45 Aligned_cols=78 Identities=8% Similarity=-0.011 Sum_probs=35.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 99999999999865988899388999999999999999887765531002200010899999999999987121898899 Q T0611 123 LAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLTPEYR 202 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p~lt~~~~ 202 (227) ...+...+..+++.|.+.-.+++.+..... +.+ ++........+.........-+...++++.+ T Consensus 68 ~~tvs~~l~~L~~~gli~r~~~~~DrR~~~-l~L---------------T~~G~~~~~~~~~~~~~~~~~~~~~ls~~e~ 131 (150) T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKL-IAA---------------TEEGRRLRDDAKARVDAAHGRYFEGIPDTVV 131 (150) T ss_dssp HHHHHHHHHHHHTTTSEEC------------CEE---------------CHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCEEE-EEE---------------CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 777889999999869856514887677468-788---------------9889999999999999999999967999999 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999854102 Q T0611 203 ERVLALREKYRPTL 216 (227) Q Consensus 203 ~~l~~l~~~~~~~l 216 (227) +.+..+.++...+. T Consensus 132 ~~l~~~L~~i~~~~ 145 (150) T 3fm5_A 132 NQMRDTLQSIAFPT 145 (150) T ss_dssp HHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999983875 No 373 >1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1 Probab=27.03 E-value=22 Score=13.44 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=21.5 Q ss_pred CCHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 97377999-9999999998728103657999998 Q T0611 1 MTMKTRDK-ILLSSLELFNDKGERNITTNHIAAH 33 (227) Q Consensus 1 ~~~~TR~~-Il~aA~~lf~e~G~~~~t~~~IA~~ 33 (227) |+|..+.. +=+.|.+++.++| +|+++||+- T Consensus 1 ~~~~~~~~~l~~~a~~~L~eRG---Vtl~dIa~~ 31 (178) T 1y9i_A 1 MSLVEKQSALESKARSWLIERG---VEIDDIAEL 31 (178) T ss_dssp -----CCCHHHHHHHHHHHHTT---CCHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHCC---CCHHHHHHH T ss_conf 9752045589999999999869---879999999 No 374 >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=26.84 E-value=22 Score=13.38 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=28.3 Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 99999998728103-6579999985778778999834489 Q T0611 11 LSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 11 ~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) ..-...|....|-. .....||..+|++...|-.+|.|+. T Consensus 20 ~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70) T 2cra_A 20 RELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRR 59 (70) T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHH T ss_conf 9999999883899999999999996899113202114355 No 375 >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=26.60 E-value=22 Score=13.35 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=18.5 Q ss_pred HHHHHHHHHCCCC-CCCHHHHHHHHC---------------CCHHHHHHHHCCHH Q ss_conf 9999999872810-365799999857---------------78778999834489 Q T0611 11 LSSLELFNDKGER-NITTNHIAAHLA---------------ISPGNLYYHFRNKS 49 (227) Q Consensus 11 ~aA~~lf~e~G~~-~~t~~~IA~~aG---------------vs~gtlY~~F~sKe 49 (227) +.--..|.+.-|- .....+||.++| ++...|...|.|+- T Consensus 20 ~~Le~~F~~n~yP~~~~re~lA~~ln~~~~~~~~~~~~~~~lt~~~V~vWFqNrR 74 (95) T 2cuf_A 20 AVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 74 (95) T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9999999987998999999999996701100221221003656799999989875 No 376 >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Probab=26.51 E-value=22 Score=13.34 Aligned_cols=18 Identities=17% Similarity=-0.055 Sum_probs=9.2 Q ss_pred HHHHHHHHHHCCCCCCCH Q ss_conf 999999998728103657 Q T0611 10 LLSSLELFNDKGERNITT 27 (227) Q Consensus 10 l~aA~~lf~e~G~~~~t~ 27 (227) .+.-..++...||.-.+. T Consensus 17 r~~l~~~L~~~g~~v~~a 34 (208) T 1yio_A 17 REGLRNLLRSAGFEVETF 34 (208) T ss_dssp HHHHHHHHHTTTCEEEEE T ss_pred HHHHHHHHHHCCCEEEEE T ss_conf 999999999779999997 No 377 >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} Probab=26.42 E-value=22 Score=13.33 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 3779999999999998728103657999998577877899983 Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227) ||+.=.|---++-.++.++=..+|.++||+..|+++..+...+ T Consensus 7 m~~~f~~Al~~L~~La~~~~~~~ss~eIA~~~~i~~~~l~kIl 49 (162) T 3k69_A 7 MKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNIL 49 (162) T ss_dssp CTHHHHHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 2228999999999998489987369999998890999999999 No 378 >2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A* Probab=26.37 E-value=23 Score=13.32 Aligned_cols=19 Identities=11% Similarity=0.189 Sum_probs=8.2 Q ss_pred CCHHHHHHHHCCCHHHHHH Q ss_conf 6579999985778778999 Q T0611 25 ITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 25 ~t~~~IA~~aGvs~gtlY~ 43 (227) .|.++||+.+|||..++-. T Consensus 79 YT~rEvAe~tGv~~e~~rr 97 (222) T 2ev1_A 79 VSAREISENYGVDLELLQR 97 (222) T ss_dssp ECHHHHHHHHTCCHHHHHH T ss_pred ECHHHHHHHHCCCHHHHHH T ss_conf 8699999997919999999 No 379 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=25.77 E-value=23 Score=13.24 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH Q ss_conf 779999999999998728103657999998577877899983448999 Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227) Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227) +|+.+||+.- ++..| .|=.+||+++|||+.++..|...=++. T Consensus 5 ~~~~~ll~~L----~~g~~--~SG~~la~~L~iSR~avwk~i~~L~~~ 46 (321) T 1bia_A 5 TVPLKLIALL----ANGEF--HSGEQLGETLGMSRAAINKHIQTLRDW 46 (321) T ss_dssp HHHHHHHHHH----TTSSC--BCHHHHHHHHTSCHHHHHHHHHHHHHT T ss_pred CHHHHHHHHH----HCCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 4199999997----26993--879999999798999999999999976 No 380 >3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Probab=25.02 E-value=24 Score=13.15 Aligned_cols=29 Identities=10% Similarity=0.183 Sum_probs=22.7 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99983448999999999999999998752 Q T0611 41 LYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227) Q Consensus 41 lY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227) .||.|+|.++|..++.+.+.+.+...++. T Consensus 4 ~~h~~~~~~~l~~~~a~~i~~~~~~~i~~ 32 (232) T 3lhi_A 4 VWHEYENAAEAAQSLADAVADALQGALDE 32 (232) T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 69976999999999999999999999997 No 381 >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 Probab=24.95 E-value=24 Score=13.14 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=6.2 Q ss_pred CHHHHHHHHCCCHHHH Q ss_conf 5799999857787789 Q T0611 26 TTNHIAAHLAISPGNL 41 (227) Q Consensus 26 t~~~IA~~aGvs~gtl 41 (227) |.+++|+..|||+.|+ T Consensus 37 s~r~La~~~~vSr~tv 52 (102) T 1v4r_A 37 SVADIRAQFGVAAKTV 52 (102) T ss_dssp CHHHHHHHSSSCTTHH T ss_pred CHHHHHHHHCCCHHHH T ss_conf 8999999979799999 No 382 >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* Probab=24.49 E-value=24 Score=13.08 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=11.0 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 4441268899999999999999999 Q T0611 102 EYLLDSDPRLRQDYREFTNRCLAAI 126 (227) Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (227) .++...+|.+...+.....+..... T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (227) T 3d0s_A 113 RSWIADRPEISEQLLRVLARRLRRT 137 (227) T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 9999879999999999999999999 No 383 >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} Probab=24.22 E-value=25 Score=13.04 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH Q ss_conf 999999999999872810365799999857787789 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNL 41 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtl 41 (227) .+++.+.....| |.+-.+++++|+.+|+....+ T Consensus 5 ~q~~~~~i~~~~---~~~Pp~v~dla~~l~~~~~~~ 37 (121) T 2pjp_A 5 QQAIWQKAEPLF---GDEPWWVRDLAKETGTDEQAM 37 (121) T ss_dssp HHHHHHHHGGGC---SSSCEEHHHHHHHTTCCHHHH T ss_pred HHHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHH T ss_conf 999999999987---579997999999979299999 No 384 >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} Probab=24.17 E-value=25 Score=13.03 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHCCCC---CC-CHHHHHHHHCCCHHHHHHHH Q ss_conf 99999999999872810---36-57999998577877899983 Q T0611 7 DKILLSSLELFNDKGER---NI-TTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~---~~-t~~~IA~~aGvs~gtlY~~F 45 (227) ++|-++=.+.+....|. .. |-+++|+..|||++|+-.=+ T Consensus 32 ~qI~~~L~~~I~~G~l~pG~rLPSereLA~~lgVSR~TVr~Al 74 (272) T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEAR 74 (272) T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999983999993999379999999895999999999 No 385 >2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus} Probab=23.87 E-value=25 Score=12.99 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH Q ss_conf 99999999999872810365799999857787 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISP 38 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~ 38 (227) ..|...=+....+.||=..++.+|+...|++. T Consensus 22 ~~Ia~~iI~~Ld~~GyL~~~~~ei~~~l~~~~ 53 (130) T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLRCSV 53 (130) T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH T ss_pred HHHHHHHHHCCCCCCEECCCHHHHHHHHCCCH T ss_conf 99999999708989825678899998847888 No 386 >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Probab=23.77 E-value=25 Score=12.98 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999999987281036-5799999857787789998344899 Q T0611 9 ILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -+.+-...|....|-.. ....||..+|++...|-..|.|+.. T Consensus 20 Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~~WFqNrR~ 62 (77) T 1nk2_P 20 QTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62 (77) T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCHHHHH T ss_conf 9999999998779999999999998709897781241543889 No 387 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=23.71 E-value=25 Score=12.97 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 999999999999872810365799999857787789998344 Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) |+.=...-++++.++| .+|-.+||+..|+|+.|+...... T Consensus 14 r~~N~~~il~~i~~~g--~~SR~ela~~~gLs~~Tvs~iv~~ 53 (406) T 1z6r_A 14 KQTNAGAVYRLIDQLG--PVSRIDLSRLAQLAPASITKIVHE 53 (406) T ss_dssp HHHHHHHHHHHHHSSC--SCCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999999859--918999998879599999999999 No 388 >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Probab=23.69 E-value=25 Score=12.97 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=24.8 Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHH Q ss_conf 9999999987281036-579999985778778999834489 Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKS 49 (227) Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe 49 (227) +.+--..|.+..|-.. ...+||.++|++...|-..|.|+. T Consensus 32 l~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~iWFqNrR 72 (81) T 1b8i_A 32 TLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRR 72 (81) T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCHHHH T ss_conf 99999999887999999999999990999778212255556 No 389 >2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} Probab=23.38 E-value=25 Score=12.93 Aligned_cols=29 Identities=3% Similarity=-0.030 Sum_probs=22.5 Q ss_pred CCCCHHHHHHHHC--CCHHHHHHHHCCHHHH Q ss_conf 0365799999857--7877899983448999 Q T0611 23 RNITTNHIAAHLA--ISPGNLYYHFRNKSDI 51 (227) Q Consensus 23 ~~~t~~~IA~~aG--vs~gtlY~~F~sKe~L 51 (227) .+.|..++|+++| ||++++-.|=.++... T Consensus 20 ~gltq~~lA~~~g~~is~~~is~~E~G~~~p 50 (71) T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERGDRAV 50 (71) T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHTCSCC T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHCCCCCC T ss_conf 4996999999988972899999998699899 No 390 >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 Probab=23.14 E-value=26 Score=12.90 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=8.2 Q ss_pred CCHHHHHHHH-----CCCHHHHHHH Q ss_conf 6579999985-----7787789998 Q T0611 25 ITTNHIAAHL-----AISPGNLYYH 44 (227) Q Consensus 25 ~t~~~IA~~a-----Gvs~gtlY~~ 44 (227) .|.++|-+.+ .||.+|+|+- T Consensus 35 ~sa~eI~~~l~~~~~~is~aTVYR~ 59 (136) T 1mzb_A 35 MSAEDVYKALMEAGEDVGLATVYRV 59 (136) T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 9999999999975878888999999 No 391 >2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} Probab=22.58 E-value=26 Score=12.82 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 9999999999987281036579999985778778999 Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYY 43 (227) Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~ 43 (227) ++=+++|..++- +|-.-.++|.+.|+|++.+.+ T Consensus 21 ~~ti~iAr~VLV----~Gr~q~~va~~~GlskqaVsq 53 (101) T 2w7n_A 21 QQTIEIARGVLV----DGKPQATFATSLGLTRGAVSQ 53 (101) T ss_dssp HHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHCCHHHHHHH T ss_conf 899999999996----882099999996730989999 No 392 >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=22.25 E-value=27 Score=12.77 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 99999999987281036-5799999857787789998344899 Q T0611 9 ILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 9 Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) -+++--..|.+..|-.. ...+||.++|++...|-.+|.|+.. T Consensus 28 Ql~~Le~~F~~~~yP~~~~r~~LA~~lgL~~~qV~vWFqNrR~ 70 (80) T 2dmt_A 28 QLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 70 (80) T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHH T ss_conf 9999999999867877889999999949891306220474799 No 393 >1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Probab=22.03 E-value=27 Score=12.74 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=19.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 365799999857787789998344 Q T0611 24 NITTNHIAAHLAISPGNLYYHFRN 47 (227) Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~s 47 (227) ++|+.++|+...-|+-.||.|..+ T Consensus 21 ~~slhemaR~i~rSR~~ir~Yl~~ 44 (51) T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKD 44 (51) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 876999999998859999999569 No 394 >2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157} Probab=21.61 E-value=27 Score=12.68 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=20.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCH Q ss_conf 03657999998577877899983448 Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNK 48 (227) Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227) .+.++++||++.|||.+-+-..++.. T Consensus 14 P~~~~~~~A~~lgvSe~ell~alp~~ 39 (164) T 2ovi_A 14 PDGTLEVVAEQYNTTLLEVVRNLPSS 39 (164) T ss_dssp CSSCHHHHHHHTTSCHHHHHHTSTTC T ss_pred CCCHHHHHHHHHCCCHHHHHHHCCCC T ss_conf 58369999998399999999848944 No 395 >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Probab=21.56 E-value=27 Score=12.67 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998659888 Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227) Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227) ...+...+..+.+.|.+. T Consensus 64 ~~tvs~~i~~L~~~g~I~ 81 (144) T 3f3x_A 64 QSAITAAVDKLEAKGLVR 81 (144) T ss_dssp HHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHHHHHHHCCCEE T ss_conf 868999999999678801 No 396 >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Probab=21.35 E-value=28 Score=12.64 Aligned_cols=11 Identities=9% Similarity=-0.034 Sum_probs=4.8 Q ss_pred HCCCHHHHHHH Q ss_conf 21898899999 Q T0611 195 PYLTPEYRERV 205 (227) Q Consensus 195 p~lt~~~~~~l 205 (227) |+.+...+..+ T Consensus 110 ~yp~~~~r~~l 120 (146) T 1au7_A 110 SKPSSQEIMRM 120 (146) T ss_dssp SSCCHHHHHHH T ss_pred CCCCHHHHHHH T ss_conf 99999999999 No 397 >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Probab=21.22 E-value=15 Score=14.55 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=4.6 Q ss_pred CHHHHHHHHCCCHH Q ss_conf 57999998577877 Q T0611 26 TTNHIAAHLAISPG 39 (227) Q Consensus 26 t~~~IA~~aGvs~g 39 (227) |+++||+..++++. T Consensus 188 tl~eia~~~~i~~k 201 (345) T 3k7a_M 188 TFKEIQSLIHVKTK 201 (345) T ss_dssp CHHHHHHSSSCCSH T ss_pred CHHHHHHHHCCCHH T ss_conf 79999988698899 No 398 >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Probab=21.20 E-value=28 Score=12.62 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=19.7 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCC-HHHHH Q ss_conf 999999987281036579999985778-77899 Q T0611 11 LSSLELFNDKGERNITTNHIAAHLAIS-PGNLY 42 (227) Q Consensus 11 ~aA~~lf~e~G~~~~t~~~IA~~aGvs-~gtlY 42 (227) +.=+++|.+..-..++++++|+++|+. +.=|| T Consensus 17 ~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiY 49 (76) T 1cf7_A 17 TKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIY 49 (76) T ss_dssp HHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHH T ss_conf 999999867899844199999986585304699 No 399 >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 Probab=21.18 E-value=28 Score=12.62 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=30.8 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH Q ss_conf 999999998728103-65799999857787789998344899 Q T0611 10 LLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227) Q Consensus 10 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227) ++.--..|.+..|-. .....||..+|+|...|-..|.|+.. T Consensus 15 l~~Le~~F~~n~yP~~~~r~~LA~~lgl~~~qI~~WFqNrR~ 56 (68) T 1yz8_P 15 LQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 56 (68) T ss_dssp HHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999879898999999999959989998997485689 No 400 >1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A Probab=20.98 E-value=28 Score=12.59 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=21.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 9737799999999999987281036579999985 Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHL 34 (227) Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~a 34 (227) |+-+.|++ |..+.+.|...|=..+|..++...+ T Consensus 1 m~~k~~~~-l~~~F~~~D~d~dG~I~~~El~~~l 33 (83) T 1yx7_A 1 MACKVKAE-LEAAFKKLDANGDGYVTALELQTFM 33 (83) T ss_dssp CCSCSCTH-HHHHHHHHSSSCSSSCSHHHHHHHH T ss_pred CCHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 97799999-9999999878998929689999999 No 401 >1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Probab=20.92 E-value=15 Score=14.61 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=7.7 Q ss_pred CCHHHHHHHHCCHHHHHHHH Q ss_conf 78778999834489999999 Q T0611 36 ISPGNLYYHFRNKSDIIYEI 55 (227) Q Consensus 36 vs~gtlY~~F~sKe~Ll~av 55 (227) +++..+...+..-.++...+ T Consensus 101 i~~~~f~~l~~~~~~~~~~~ 120 (213) T 1o5l_A 101 IPKEVFLDLLMKDRELLLFF 120 (213) T ss_dssp EEHHHHHHHHHHCHHHHHHH T ss_pred ECHHHHHHHHHHCHHHHHHH T ss_conf 12999987774199999999 No 402 >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A Probab=20.32 E-value=29 Score=12.49 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHHHHCCCC---CC-CHHHHHHHHCCCHHHHHHHH Q ss_conf 7999999999999872810---36-57999998577877899983 Q T0611 5 TRDKILLSSLELFNDKGER---NI-TTNHIAAHLAISPGNLYYHF 45 (227) Q Consensus 5 TR~~Il~aA~~lf~e~G~~---~~-t~~~IA~~aGvs~gtlY~~F 45 (227) --++|.+.=.+.+...-|. .. |.+++|+..|||+.|+-.-+ T Consensus 5 ~Y~QI~~~i~~~I~~g~l~pG~kLPse~eLa~~~~VSr~tVR~Al 49 (129) T 2ek5_A 5 LYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGL 49 (129) T ss_dssp HHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999985999994999489999999697899999999 Done!