Query T0611 YP_960827.1, Marinobacter aquaeolei vt8, 227 residues
Match_columns 227
No_of_seqs 159 out of 8127
Neff 9.5
Searched_HMMs 15564
Date Mon Jul 5 09:13:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0611.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0611.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v7ba1 a.4.1.9 (A:1-74) Trans 99.5 2.3E-14 1.5E-18 124.5 9.7 72 1-72 1-72 (74)
2 d1t56a1 a.4.1.9 (A:22-94) Ethr 99.5 2.2E-14 1.4E-18 124.7 9.4 69 4-72 3-71 (73)
3 d2hkua1 a.4.1.9 (A:18-87) Puta 99.5 2E-14 1.3E-18 125.0 9.0 65 4-69 1-65 (70)
4 d2gfna1 a.4.1.9 (A:4-80) Proba 99.5 3.1E-14 2E-18 123.6 9.9 70 4-73 6-75 (77)
5 d2o7ta1 a.4.1.9 (A:1-78) Trans 99.5 1.5E-14 9.9E-19 125.9 8.4 68 3-70 6-73 (78)
6 d2g7sa1 a.4.1.9 (A:3-76) Putat 99.5 3.2E-14 2E-18 123.5 9.1 69 2-70 2-70 (74)
7 d2fbqa1 a.4.1.9 (A:2-80) Trans 99.5 4.2E-14 2.7E-18 122.6 9.4 65 4-68 4-68 (79)
8 d2d6ya1 a.4.1.9 (A:7-74) Putat 99.5 3.5E-14 2.3E-18 123.2 8.7 64 4-67 2-65 (68)
9 d1ui5a1 a.4.1.9 (A:5-75) A-fac 99.5 4.4E-14 2.8E-18 122.4 9.1 64 4-67 5-68 (71)
10 d2fd5a1 a.4.1.9 (A:1-76) Proba 99.5 2.6E-14 1.7E-18 124.2 7.5 67 4-70 7-73 (76)
11 d1jt6a1 a.4.1.9 (A:2-72) Multi 99.5 5E-14 3.2E-18 122.0 8.9 66 4-69 1-66 (71)
12 d1t33a1 a.4.1.9 (A:1-88) Putat 99.5 6E-14 3.8E-18 121.4 9.1 64 4-68 12-75 (88)
13 d2np5a1 a.4.1.9 (A:9-77) Trans 99.5 6.6E-14 4.2E-18 121.1 9.3 67 4-70 1-67 (69)
14 d3c07a1 a.4.1.9 (A:15-89) Puta 99.5 4.4E-14 2.8E-18 122.5 8.3 66 4-69 5-70 (75)
15 d2id6a1 a.4.1.9 (A:1-75) Trans 99.5 3.6E-14 2.3E-18 123.1 7.7 67 3-69 2-68 (75)
16 d1pb6a1 a.4.1.9 (A:14-85) Hypo 99.5 6.4E-14 4.1E-18 121.2 8.7 66 4-69 4-69 (72)
17 d1vi0a1 a.4.1.9 (A:6-77) Hypot 99.5 1.4E-13 8.9E-18 118.7 9.7 67 5-71 2-68 (72)
18 d1rkta1 a.4.1.9 (A:2-82) Hypot 99.5 9.6E-14 6.2E-18 119.9 8.8 68 4-71 11-78 (81)
19 d2i10a1 a.4.1.9 (A:10-78) Puta 99.5 2.1E-14 1.3E-18 124.9 5.4 64 6-69 2-65 (69)
20 d2fx0a1 a.4.1.9 (A:4-76) Hemol 99.5 6.8E-14 4.4E-18 121.0 7.9 56 4-59 4-59 (73)
21 d2g3ba1 a.4.1.9 (A:2-73) Putat 99.5 8.9E-14 5.7E-18 120.1 8.3 66 4-69 2-67 (72)
22 d2hyja1 a.4.1.9 (A:8-82) Putat 99.5 1.1E-13 6.9E-18 119.5 8.7 65 3-67 4-68 (75)
23 d2oi8a1 a.4.1.9 (A:8-86) Putat 99.5 8E-14 5.1E-18 120.5 8.0 67 4-70 9-75 (79)
24 d1zk8a1 a.4.1.9 (A:6-77) Trans 99.5 7E-14 4.5E-18 120.9 7.7 67 4-70 3-69 (72)
25 d1sgma1 a.4.1.9 (A:5-77) Putat 99.5 8.2E-14 5.3E-18 120.4 7.7 67 4-70 2-69 (73)
26 d2gena1 a.4.1.9 (A:6-75) Proba 99.5 1.6E-13 1.1E-17 118.2 9.2 65 5-69 1-65 (70)
27 d1z0xa1 a.4.1.9 (A:4-71) Trans 99.4 8E-14 5.1E-18 120.5 6.2 60 4-63 2-62 (68)
28 d2id3a1 a.4.1.9 (A:13-80) Puta 99.4 3.3E-13 2.1E-17 115.9 8.6 61 3-63 5-65 (68)
29 d2iu5a1 a.4.1.9 (A:1-71) Trans 99.4 1.9E-13 1.2E-17 117.6 7.0 62 2-63 4-65 (71)
30 d2fq4a1 a.4.1.9 (A:9-77) Trans 99.4 7.3E-13 4.7E-17 113.3 7.7 60 3-62 3-62 (69)
31 d2vkva1 a.4.1.9 (A:6-67) Tetra 99.4 4E-13 2.6E-17 115.3 6.4 58 6-63 1-58 (62)
32 d2g7la1 a.4.1.9 (A:16-83) Puta 99.4 2.1E-13 1.3E-17 117.4 3.8 62 2-63 2-63 (68)
33 d2g7ga1 a.4.1.9 (A:9-73) Putat 99.3 4.4E-13 2.8E-17 115.0 4.9 57 5-63 2-58 (65)
34 d2np3a1 a.4.1.9 (A:35-99) Puta 99.3 3.4E-13 2.2E-17 115.8 2.3 58 9-67 1-58 (65)
35 d1pb6a2 a.121.1.1 (A:86-211) H 97.9 0.00025 1.6E-08 49.3 13.1 122 74-198 2-124 (126)
36 d1t56a2 a.121.1.1 (A:95-214) E 97.6 0.0037 2.4E-07 40.5 15.0 80 73-152 2-83 (120)
37 d1vi0a2 a.121.1.1 (A:78-194) H 97.5 0.0042 2.7E-07 40.1 13.7 87 76-162 2-91 (117)
38 d2gena2 a.121.1.1 (A:76-193) P 97.1 0.0062 4E-07 38.9 11.0 88 76-163 3-93 (118)
39 d2hyja2 a.121.1.1 (A:83-200) P 96.6 0.032 2.1E-06 33.5 11.8 80 74-153 1-87 (118)
40 d1rkta2 a.121.1.1 (A:83-205) H 96.3 0.049 3.2E-06 32.1 12.7 57 100-156 30-88 (123)
41 d1ui5a2 a.121.1.1 (A:80-212) A 96.2 0.0082 5.3E-07 37.9 6.8 123 77-212 4-129 (133)
42 d2d6ya2 a.121.1.1 (A:75-192) P 96.2 0.018 1.1E-06 35.4 8.2 90 78-170 2-92 (118)
43 d1ijwc_ a.4.1.2 (C:) HIN recom 95.9 0.0045 2.9E-07 39.8 4.1 35 10-48 11-45 (47)
44 d1jt6a2 a.121.1.1 (A:73-187) M 95.9 0.077 4.9E-06 30.6 10.9 66 101-170 30-95 (115)
45 d2g3ba2 a.121.1.1 (A:74-189) P 95.8 0.074 4.7E-06 30.8 10.0 60 98-157 28-89 (116)
46 d2id3a2 a.121.1.1 (A:81-203) P 95.1 0.13 8.4E-06 28.9 13.8 106 77-194 7-116 (123)
47 d2g7sa2 a.121.1.1 (A:77-192) P 94.2 0.22 1.4E-05 27.2 11.4 75 75-149 2-82 (116)
48 d2hsga1 a.35.1.5 (A:2-58) Gluc 94.1 0.021 1.4E-06 34.8 3.3 37 24-60 1-37 (57)
49 d2i10a2 a.121.1.1 (A:79-194) P 93.5 0.28 1.8E-05 26.4 8.7 77 77-153 4-87 (116)
50 d2fq4a2 a.121.1.1 (A:78-192) T 93.2 0.31 2E-05 26.1 11.9 66 79-144 6-73 (115)
51 d1qpza1 a.35.1.5 (A:2-58) Puri 92.6 0.036 2.3E-06 33.1 2.6 34 25-58 1-34 (57)
52 d1efaa1 a.35.1.5 (A:2-60) Lac 92.5 0.03 1.9E-06 33.7 2.0 35 24-58 2-36 (59)
53 d1biaa1 a.4.5.1 (A:1-63) Bioti 92.0 0.13 8.2E-06 29.0 4.7 41 4-50 5-45 (63)
54 d1pdnc_ a.4.1.5 (C:) Paired pr 91.6 0.2 1.3E-05 27.5 5.3 39 1-47 17-55 (123)
55 d1d5ya1 a.4.1.8 (A:3-56) Rob t 91.4 0.1 6.5E-06 29.7 3.7 42 7-48 2-43 (54)
56 d3c07a2 a.121.1.1 (A:90-235) P 91.3 0.52 3.3E-05 24.4 10.1 134 77-217 4-144 (146)
57 d1bl0a1 a.4.1.8 (A:9-62) MarA 90.8 0.18 1.1E-05 27.9 4.4 41 8-48 3-43 (54)
58 d1k78a1 a.4.1.5 (A:19-81) Pax- 90.4 0.3 1.9E-05 26.2 5.3 39 1-47 15-53 (63)
59 d1jhfa1 a.4.5.2 (A:2-72) LexA 90.2 0.38 2.4E-05 25.4 5.7 42 5-47 6-48 (71)
60 d1uxda_ a.35.1.5 (A:) Fructose 90.0 0.059 3.8E-06 31.5 1.5 26 25-50 1-26 (59)
61 d2p4wa1 a.4.5.64 (A:1-194) Tra 89.9 0.25 1.6E-05 26.8 4.6 39 3-48 14-52 (194)
62 d1j5ya1 a.4.5.1 (A:3-67) Putat 89.6 0.33 2.1E-05 25.9 5.0 45 1-47 1-45 (65)
63 d1ulya_ a.4.5.58 (A:) Hypothet 89.1 0.22 1.4E-05 27.3 3.8 37 4-47 19-55 (190)
64 d1mkma1 a.4.5.33 (A:1-75) Tran 88.1 0.33 2.1E-05 25.9 4.2 33 14-47 11-43 (75)
65 d1biaa1 a.4.5.1 (A:1-63) Bioti 85.7 0.44 2.8E-05 24.9 3.7 37 5-47 6-42 (63)
66 d1y9qa1 a.35.1.8 (A:4-82) Prob 85.1 0.96 6.2E-05 22.4 5.3 43 6-51 6-48 (79)
67 d1s7oa_ a.4.13.3 (A:) Hypothet 84.4 0.45 2.9E-05 24.8 3.3 38 14-51 22-59 (106)
68 d2ev0a1 a.4.5.24 (A:2-62) Mang 84.4 1.3 8.3E-05 21.4 5.6 41 5-47 4-44 (61)
69 d2b5aa1 a.35.1.3 (A:1-77) Regu 84.2 1.3 8.2E-05 21.5 5.5 44 5-51 7-50 (77)
70 d1r1ta_ a.4.5.5 (A:) SmtB repr 84.2 0.45 2.9E-05 24.9 3.2 38 3-47 22-59 (98)
71 d1stza1 a.4.5.51 (A:14-100) He 84.0 1.3 8.2E-05 21.5 5.5 44 5-49 5-50 (87)
72 d1r1ua_ a.4.5.5 (A:) Metal-sen 83.9 1 6.7E-05 22.1 5.0 38 3-47 17-54 (94)
73 d2a6ca1 a.35.1.13 (A:1-69) HTH 83.4 1.3 8.4E-05 21.4 5.3 46 3-51 1-47 (69)
74 d2jn6a1 a.4.1.19 (A:1-89) Unch 82.2 0.73 4.7E-05 23.3 3.6 22 24-45 23-44 (89)
75 d1xsva_ a.4.13.3 (A:) Hypothet 81.8 1.6 0.00011 20.7 8.2 34 14-47 24-57 (106)
76 d2ezla_ a.4.1.2 (A:) Ibeta sub 81.4 1.1 6.9E-05 22.0 4.3 40 6-46 35-75 (99)
77 d1ub9a_ a.4.5.28 (A:) Hypothet 81.0 1.2 7.6E-05 21.7 4.4 37 5-47 17-53 (100)
78 d1rp3a2 a.4.13.2 (A:164-234) S 80.7 0.76 4.9E-05 23.2 3.3 33 14-46 27-59 (71)
79 d1gdta1 a.4.1.2 (A:141-183) ga 80.5 0.66 4.2E-05 23.6 2.9 24 23-46 17-40 (43)
80 d1a04a1 a.4.6.2 (A:150-216) Ni 80.5 0.58 3.8E-05 24.0 2.7 25 23-47 20-44 (67)
81 d2isya1 a.4.5.24 (A:2-64) Iron 79.2 2 0.00013 20.1 5.5 40 5-46 6-45 (63)
82 d1u2wa1 a.4.5.5 (A:12-119) Cad 79.1 1.5 9.4E-05 21.0 4.3 36 5-46 32-67 (108)
83 d1fsea_ a.4.6.2 (A:) Germinati 78.6 0.73 4.7E-05 23.3 2.7 25 23-47 18-42 (67)
84 d2ao9a1 a.4.1.17 (A:13-132) Ph 78.3 2.1 0.00013 19.9 9.1 35 15-49 27-62 (120)
85 d1l3la1 a.4.6.2 (A:170-234) Qu 78.0 0.77 5E-05 23.1 2.7 26 23-48 18-43 (65)
86 d1or7a1 a.4.13.2 (A:120-187) S 77.8 1.1 7E-05 22.0 3.4 34 13-46 23-56 (68)
87 d1yioa1 a.4.6.2 (A:131-200) Re 77.3 0.84 5.4E-05 22.8 2.7 26 22-47 25-50 (70)
88 d1ku9a_ a.4.5.36 (A:) DNA-bind 77.2 2.2 0.00014 19.6 5.2 24 23-46 40-63 (151)
89 d2v4jc1 d.203.1.1 (C:3-105) Ds 77.0 2.3 0.00015 19.6 5.2 44 6-50 44-87 (103)
90 d2cfxa1 a.4.5.32 (A:1-63) Tran 76.0 2 0.00013 20.0 4.3 42 1-48 1-43 (63)
91 d1z05a1 a.4.5.63 (A:10-80) Tra 75.8 2.4 0.00016 19.4 5.4 34 12-47 10-43 (71)
92 d2o3fa1 a.4.1.20 (A:1-83) Puta 75.8 0.92 5.9E-05 22.5 2.5 35 21-55 33-72 (83)
93 d2d1ha1 a.4.5.50 (A:1-109) Hyp 75.4 1.6 0.00011 20.7 3.7 30 16-47 30-59 (109)
94 d1b0na2 a.35.1.3 (A:1-68) SinR 74.4 1.2 7.7E-05 21.7 2.8 27 23-49 13-39 (68)
95 d1r69a_ a.35.1.2 (A:) 434 C1 r 74.2 1.3 8.2E-05 21.5 2.9 28 22-49 12-39 (63)
96 d2a61a1 a.4.5.28 (A:5-143) Tra 74.0 2.2 0.00014 19.7 4.1 17 124-140 59-75 (139)
97 d1y7ya1 a.35.1.3 (A:5-73) Rest 73.6 2.5 0.00016 19.3 4.3 37 16-52 14-50 (69)
98 d2auwa1 a.35.1.10 (A:88-154) H 73.4 1.4 9.2E-05 21.1 3.0 29 22-50 12-40 (67)
99 d1utxa_ a.35.1.3 (A:) Putative 73.3 1.4 8.9E-05 21.2 2.9 29 23-51 13-41 (66)
100 d1i1ga1 a.4.5.32 (A:2-61) LprA 72.1 2.7 0.00018 19.0 4.2 31 16-48 11-41 (60)
101 d1r71a_ a.4.14.1 (A:) Transcri 72.1 2.9 0.00018 18.8 4.3 31 13-46 22-52 (114)
102 d2pg4a1 a.4.5.48 (A:1-92) Unch 71.3 3.1 0.0002 18.6 5.2 43 8-54 15-57 (92)
103 d1xs9a_ i.11.1.1 (A:) Ternary 70.6 0.39 2.5E-05 25.3 -0.4 74 6-81 9-83 (129)
104 d2hr3a1 a.4.5.28 (A:2-146) Pro 70.1 3 0.00019 18.7 4.0 17 124-140 64-80 (145)
105 d2croa_ a.35.1.2 (A:) cro 434 69.9 1.8 0.00011 20.4 2.9 27 23-49 15-41 (65)
106 d1sfxa_ a.4.5.50 (A:) Hypothet 69.9 2 0.00013 20.0 3.1 25 23-47 33-57 (109)
107 d2o38a1 a.35.1.13 (A:28-116) H 68.7 3.4 0.00022 18.2 5.5 46 3-51 6-52 (89)
108 d1lmb3_ a.35.1.2 (3:) lambda C 68.2 1.7 0.00011 20.6 2.5 33 23-55 24-56 (87)
109 d2r1jl1 a.35.1.2 (L:3-68) P22 68.2 0.79 5.1E-05 23.0 0.8 32 23-54 15-46 (66)
110 d1r8da_ a.6.1.3 (A:) Multidrug 67.9 2 0.00013 19.9 2.8 26 25-52 3-28 (109)
111 d2ppxa1 a.35.1.3 (A:30-91) Unc 67.7 2.2 0.00014 19.7 3.0 27 23-49 11-37 (62)
112 d2cg4a1 a.4.5.32 (A:4-66) Regu 67.7 3.6 0.00023 18.1 4.2 32 15-48 12-43 (63)
113 d2cyya1 a.4.5.32 (A:5-64) Puta 67.6 3.6 0.00023 18.1 4.2 31 16-48 11-41 (60)
114 d1vz0a1 a.4.14.1 (A:116-208) P 66.4 3.8 0.00024 17.9 4.2 31 13-46 11-41 (93)
115 d1g2ha_ a.4.1.12 (A:) Transcri 65.6 3.3 0.00021 18.4 3.5 32 7-45 23-54 (61)
116 d1p4xa2 a.4.5.28 (A:126-250) S 65.0 3.7 0.00024 18.0 3.7 23 196-218 94-116 (125)
117 d2fx0a2 a.121.1.1 (A:77-198) H 64.8 4.1 0.00026 17.7 7.0 80 76-156 3-83 (122)
118 d1p4wa_ a.4.6.2 (A:) Transcrip 64.5 2.3 0.00015 19.5 2.6 24 23-46 36-59 (87)
119 d1s3ja_ a.4.5.28 (A:) Putative 64.1 3.9 0.00025 17.9 3.6 18 123-140 63-80 (143)
120 d1hlva1 a.4.1.7 (A:1-66) DNA-b 64.0 4.2 0.00027 17.6 4.0 31 25-55 26-56 (66)
121 d1r71a_ a.4.14.1 (A:) Transcri 63.9 4.2 0.00027 17.6 4.8 31 13-46 22-52 (114)
122 d3broa1 a.4.5.28 (A:3-137) Tra 63.9 4.2 0.00027 17.6 4.5 20 23-42 44-63 (135)
123 d2icta1 a.35.1.3 (A:8-94) Anti 63.3 1.6 0.0001 20.7 1.6 35 23-57 13-47 (87)
124 d1r8ea1 a.6.1.3 (A:3-120) Tran 63.1 2.6 0.00017 19.1 2.6 26 25-52 4-29 (118)
125 d2gaua1 a.4.5.4 (A:152-232) Tr 63.0 4.4 0.00028 17.5 5.2 42 5-46 2-51 (81)
126 d2dt5a1 a.4.5.38 (A:4-77) Tran 62.7 4.4 0.00028 17.4 3.9 36 9-44 10-45 (74)
127 d1bl0a2 a.4.1.8 (A:63-124) Mar 62.1 4.5 0.00029 17.3 4.7 38 10-50 3-41 (62)
128 d1q06a_ a.6.1.3 (A:) Transcrip 61.8 3.1 0.0002 18.6 2.8 21 25-45 1-21 (127)
129 d1vola2 a.74.1.2 (A:208-316) T 61.7 4.6 0.00029 17.3 4.9 19 124-142 23-41 (109)
130 d1b72a_ a.4.1.1 (A:) Homeobox 61.7 4.2 0.00027 17.6 3.5 42 10-51 39-81 (88)
131 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 61.5 4.6 0.0003 17.3 3.7 41 10-50 12-53 (58)
132 d1le8a_ a.4.1.1 (A:) Mating ty 61.4 3.9 0.00025 17.8 3.3 39 9-50 11-50 (53)
133 d2fxaa1 a.4.5.28 (A:6-167) Pro 60.9 4.4 0.00028 17.5 3.4 17 124-140 70-86 (162)
134 d1umqa_ a.4.1.12 (A:) Photosyn 60.7 4.8 0.00031 17.2 3.8 27 17-46 29-55 (60)
135 d1ji8a_ d.203.1.1 (A:) DsrC, t 60.0 1.7 0.00011 20.5 1.2 40 8-48 54-93 (111)
136 d3ctaa1 a.4.5.28 (A:5-89) Ta10 59.7 4 0.00026 17.8 3.1 24 23-46 20-43 (85)
137 d1aisb2 a.74.1.2 (B:1206-1300) 59.4 5 0.00032 17.0 4.8 19 124-142 22-40 (95)
138 d1ji8a_ d.203.1.1 (A:) DsrC, t 59.3 1.8 0.00012 20.3 1.2 40 8-48 54-93 (111)
139 d2fbia1 a.4.5.28 (A:5-140) Pro 59.0 4.9 0.00032 17.1 3.4 15 125-139 60-74 (136)
140 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 58.4 4.5 0.00029 17.3 3.2 41 9-49 19-60 (67)
141 d1lvaa3 a.4.5.35 (A:511-574) C 58.0 5.3 0.00034 16.9 4.9 39 7-45 6-44 (64)
142 d1jt6b2 a.121.1.1 (B:73-187) M 57.5 5.4 0.00034 16.8 8.2 60 102-168 31-90 (115)
143 d1z91a1 a.4.5.28 (A:8-144) Org 57.3 5.3 0.00034 16.9 3.3 16 125-140 63-78 (137)
144 d1zyba1 a.4.5.4 (A:148-220) Pr 57.2 3.9 0.00025 17.9 2.6 46 2-47 2-50 (73)
145 d2ofya1 a.35.1.3 (A:3-84) Puta 56.3 4.5 0.00029 17.4 2.8 25 24-48 25-49 (82)
146 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 55.4 5.8 0.00037 16.6 3.5 35 15-49 34-73 (80)
147 d1x57a1 a.35.1.12 (A:8-85) End 55.4 3.5 0.00022 18.2 2.2 36 23-58 18-53 (78)
148 d2etha1 a.4.5.28 (A:1-140) Put 54.8 5.9 0.00038 16.5 3.8 17 124-140 61-77 (140)
149 d1jgsa_ a.4.5.28 (A:) Multiple 53.7 6.1 0.00039 16.4 4.1 17 124-140 63-79 (138)
150 d2cqxa1 a.4.1.1 (A:8-66) LAG1 53.5 5.2 0.00033 16.9 2.8 37 14-50 17-55 (59)
151 d1nera_ a.35.1.2 (A:) Ner {Bac 53.2 5.4 0.00035 16.8 2.8 29 20-48 18-46 (74)
152 d1uhsa_ a.4.1.1 (A:) Homeodoma 52.7 6.3 0.00041 16.3 3.7 41 11-51 14-56 (72)
153 d1bw5a_ a.4.1.1 (A:) Insulin g 52.4 6.4 0.00041 16.2 4.0 40 10-49 15-55 (66)
154 d2ieca1 d.316.1.1 (A:11-123) H 52.0 1.9 0.00012 20.1 0.4 18 30-47 7-24 (113)
155 d2o7ta2 a.121.1.1 (A:79-188) T 51.2 6.6 0.00043 16.1 7.7 34 113-146 36-69 (110)
156 d1lj9a_ a.4.5.28 (A:) Transcri 50.6 6.8 0.00044 16.0 3.9 17 124-140 58-74 (144)
157 d1ku3a_ a.4.13.2 (A:) Sigma70 50.4 5.7 0.00036 16.6 2.6 27 17-43 21-47 (61)
158 d2ecca1 a.4.1.1 (A:1-76) Homeo 50.2 6.9 0.00044 16.0 3.3 40 9-51 17-57 (76)
159 d1aisb1 a.74.1.2 (B:1108-1205) 48.1 7.4 0.00047 15.8 4.1 20 124-143 24-43 (98)
160 d1d5ya2 a.4.1.8 (A:57-121) Rob 48.0 7.4 0.00048 15.7 4.5 39 10-51 3-42 (65)
161 d1x2ma1 a.4.1.1 (A:8-59) Lag1 48.0 7.4 0.00048 15.7 2.9 36 15-50 10-47 (52)
162 d2frha1 a.4.5.28 (A:102-216) P 47.8 7.4 0.00048 15.7 3.4 19 196-214 94-112 (115)
163 d2i52a1 d.316.1.1 (A:1-120) Hy 47.5 3.8 0.00025 17.9 1.3 28 19-47 6-34 (120)
164 d1e3oc1 a.4.1.1 (C:104-160) Oc 47.4 7.5 0.00048 15.7 3.4 40 11-50 11-51 (57)
165 d1rzsa_ a.35.1.2 (A:) cro p22 47.3 7 0.00045 16.0 2.6 19 26-44 12-30 (61)
166 d1hsja1 a.4.5.28 (A:373-487) S 46.5 7.8 0.0005 15.6 3.0 21 196-216 93-113 (115)
167 d2gmga1 a.4.5.82 (A:1-105) Hyp 45.8 5.3 0.00034 16.9 1.8 34 4-44 11-48 (105)
168 d1sgma2 a.121.1.1 (A:78-188) P 45.5 8.1 0.00052 15.5 6.8 58 75-132 2-64 (111)
169 d2p7vb1 a.4.13.2 (B:546-613) S 44.7 8.2 0.00053 15.4 2.7 23 20-42 21-43 (68)
170 d1ft9a1 a.4.5.4 (A:134-213) CO 44.4 8.3 0.00054 15.4 3.2 41 6-46 3-52 (80)
171 d1i3ja_ d.285.1.1 (A:) DNA-bin 44.3 8.4 0.00054 15.4 2.7 29 20-48 60-88 (96)
172 d2i52a1 d.316.1.1 (A:1-120) Hy 43.7 4.7 0.00031 17.2 1.3 36 19-55 6-49 (120)
173 d1p4xa1 a.4.5.28 (A:1-125) Sta 43.5 8.6 0.00055 15.3 2.7 25 196-220 95-119 (125)
174 d2ecba1 a.4.1.1 (A:8-83) Zinc 43.2 7.9 0.00051 15.5 2.4 45 5-50 12-57 (76)
175 d1z6ra1 a.4.5.63 (A:12-81) Mlc 43.1 8.7 0.00056 15.2 2.9 31 14-46 11-41 (70)
176 d1sfua_ a.4.5.19 (A:) 34L {Yab 43.1 8.5 0.00054 15.3 2.5 23 22-44 22-44 (70)
177 d2bv6a1 a.4.5.28 (A:5-140) Tra 41.8 9.1 0.00058 15.1 3.1 17 124-140 63-79 (136)
178 d1fjla_ a.4.1.1 (A:) Paired pr 41.4 9.2 0.00059 15.0 3.8 43 8-50 12-55 (65)
179 d1au7a1 a.4.1.1 (A:103-160) Pi 38.8 10 0.00064 14.8 4.5 42 9-50 10-52 (58)
180 d1wi3a_ a.4.1.1 (A:) DNA-bindi 38.5 10 0.00065 14.7 3.8 37 14-50 23-61 (71)
181 d1zq3p1 a.4.1.1 (P:2-68) Homeo 38.4 10 0.00065 14.7 2.4 42 10-51 13-55 (67)
182 d1lnwa_ a.4.5.28 (A:) MexR rep 37.8 10 0.00067 14.6 3.7 18 123-140 64-81 (141)
183 d1s7ea1 a.4.1.1 (A:103-152) He 37.1 5 0.00032 17.0 0.6 34 15-48 15-49 (50)
184 d1i5za1 a.4.5.4 (A:138-206) Ca 35.6 11 0.00072 14.4 4.4 42 6-47 3-52 (69)
185 d1jgga_ a.4.1.1 (A:) Even-skip 35.6 11 0.00072 14.4 4.0 40 11-50 12-52 (57)
186 d3bwga1 a.4.5.6 (A:5-82) Trans 35.4 11 0.00072 14.4 4.0 20 26-45 24-43 (78)
187 d1hw1a1 a.4.5.6 (A:5-78) Fatty 35.3 11 0.00073 14.4 2.3 16 26-41 29-44 (74)
188 d1p7ia_ a.4.1.1 (A:) Engrailed 35.0 11 0.00073 14.3 2.9 40 10-49 11-51 (53)
189 d1ufma_ a.4.5.47 (A:) COP9 sig 34.7 12 0.00074 14.3 4.1 33 6-39 13-45 (84)
190 d2hoea1 a.4.5.63 (A:10-71) N-a 34.4 12 0.00075 14.3 4.2 29 15-46 6-34 (62)
191 d1yz8p1 a.4.1.1 (P:1-60) Pitui 33.3 12 0.00078 14.1 2.8 41 10-50 13-54 (60)
192 d1vola1 a.74.1.2 (A:113-207) T 32.3 13 0.00081 14.0 3.8 20 124-143 24-43 (95)
193 d1k61a_ a.4.1.1 (A:) mat alpha 31.3 13 0.00083 13.9 3.0 41 9-49 12-53 (60)
194 d1ttya_ a.4.13.2 (A:) Sigma70 30.9 13 0.00085 13.9 2.9 25 17-41 31-55 (87)
195 d1ylfa1 a.4.5.55 (A:5-142) Hyp 30.9 13 0.00085 13.9 5.2 44 3-46 2-45 (138)
196 d1ftta_ a.4.1.1 (A:) Thyroid t 30.2 14 0.00087 13.8 4.0 41 10-50 14-55 (68)
197 d2fbka1 a.4.5.28 (A:8-179) Tra 30.1 14 0.00087 13.8 2.4 22 196-217 150-171 (172)
198 d2nrac1 a.4.5.10 (C:9-151) Rep 29.8 14 0.00088 13.7 2.4 39 7-45 25-69 (143)
199 d2cuea1 a.4.1.1 (A:7-74) Paire 29.7 13 0.00084 13.9 1.7 41 11-51 14-55 (68)
200 d1v4ra1 a.4.5.6 (A:1-100) Tran 29.4 14 0.00089 13.7 3.3 37 7-43 12-52 (100)
201 d3e5ua1 a.4.5.4 (A:148-227) Ch 29.3 14 0.0009 13.7 5.0 42 5-46 2-52 (80)
202 d3deua1 a.4.5.28 (A:2-141) Tra 28.6 14 0.00092 13.6 3.8 19 123-141 60-78 (140)
203 d2craa1 a.4.1.1 (A:7-64) Homeo 28.5 14 0.00092 13.6 3.7 40 11-50 14-54 (58)
204 d1lfba_ a.4.1.1 (A:) Hepatocyt 28.4 14 0.00093 13.6 2.4 12 36-47 57-68 (78)
205 d2id6a2 a.121.1.1 (A:76-200) T 27.1 15 0.00097 13.4 14.7 80 77-157 4-83 (125)
206 d1l0oc_ a.4.13.2 (C:) SigmaF { 26.7 15 0.00099 13.4 4.5 36 6-42 14-49 (57)
207 d1vnda_ a.4.1.1 (A:) VND/NK-2 26.2 16 0.001 13.3 3.5 39 10-48 21-60 (77)
208 d2fbha1 a.4.5.28 (A:8-144) Tra 25.7 16 0.001 13.2 4.2 18 123-140 57-74 (137)
209 d1b72a_ a.4.1.1 (A:) Homeobox 24.5 17 0.0011 13.1 3.8 38 12-49 41-79 (88)
210 d1x2na1 a.4.1.1 (A:6-67) Homeo 24.4 17 0.0011 13.1 2.5 27 23-49 31-57 (62)
211 d1tlqa_ a.195.1.1 (A:) Hypothe 23.4 18 0.0011 12.9 3.7 27 5-34 2-28 (161)
212 d2cpga_ a.43.1.3 (A:) Transcri 23.2 18 0.0011 12.9 2.0 16 26-41 16-31 (43)
213 d2e1oa1 a.4.1.1 (A:8-64) Homeo 23.0 18 0.0011 12.9 3.7 40 11-50 13-53 (57)
214 d1hkqa_ a.4.5.10 (A:) Replicat 22.8 18 0.0012 12.8 2.4 39 7-45 17-61 (125)
215 d1tc3c_ a.4.1.2 (C:) Transposa 22.0 19 0.0012 12.7 2.9 24 24-47 21-44 (51)
216 d1dwka1 a.35.1.4 (A:1-86) Cyan 21.8 19 0.0012 12.7 2.7 42 3-47 8-49 (86)
217 d1zk8a2 a.121.1.1 (A:78-182) T 21.5 19 0.0012 12.7 9.2 71 78-162 5-75 (105)
218 d9anta_ a.4.1.1 (A:) Antennape 21.3 19 0.0012 12.6 2.7 40 11-50 10-50 (56)
219 d1i3ja_ d.285.1.1 (A:) DNA-bin 20.9 20 0.0013 12.6 2.6 28 21-48 61-88 (96)
220 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 20.0 20 0.0013 12.5 4.3 38 13-50 16-57 (73)
No 1
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=99.54 E-value=2.3e-14 Score=124.51 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 973779999999999998728103657999998577877899983448999999999999999998752217
Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED 72 (227)
Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~ 72 (227)
|--.+|++|+++|.++|.++||.++||++||+++|||+|+||+||+||++|+.+++++..+.+...+.....
T Consensus 1 Mr~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~~~ 72 (74)
T d1v7ba1 1 MRTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITR 72 (74)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 968999999999999999859563579999988496922385507999999999999999999999988747
No 2
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.53 E-value=2.2e-14 Score=124.69 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752217
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPED 72 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~ 72 (227)
.||++||++|.++|.++||.++||++||+++|||+|++|+||+||++|+.+++.+..+.+...++...+
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 71 (73)
T d1t56a1 3 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAE 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999759150779999998698888998888499999999999999999999999871
No 3
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=99.53 E-value=2e-14 Score=125.04 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
+||++||++|.++|.++|| ++||++||+++|||+|+|||||+||++|+.+++.+...++...++.
T Consensus 1 ~tr~~Il~aA~~l~~~~G~-~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~ 65 (70)
T d2hkua1 1 QTRDALFTAATELFLEHGE-GVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAED 65 (70)
T ss_dssp CHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9699999999999876135-7449999988788853687308999999999999999999999999
No 4
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=99.53 E-value=3.1e-14 Score=123.61 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522179
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPEDR 73 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~ 73 (227)
.+|++|+++|.++|.++||.++||++||+++|||+|+|||||+||++|+.+++.+..+.+...++...+.
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~ 75 (77)
T d2gfna1 6 ERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDE 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998590405799999987888779988883999999999999999999999999838
No 5
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=99.53 E-value=1.5e-14 Score=125.86 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987522
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227)
-+||++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.++++...+.+.......
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sKe~L~~~~~~~~~~~~~~~~~~~ 73 (78)
T d2o7ta1 6 LKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQLQA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998491406799999883998879999886999999999999999999999998
No 6
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=99.52 E-value=3.2e-14 Score=123.52 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 737799999999999987281036579999985778778999834489999999999999999987522
Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227)
+-+||++|+++|.++|.++||.++||++||+++|||+|++||||+||++|+.++++++.+.+...+...
T Consensus 2 p~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~i 70 (74)
T d2g7sa1 2 PQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAEL 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788999999999999998591506799999987818416988883999999999999999999999998
No 7
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.51 E-value=4.2e-14 Score=122.62 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLD 68 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~ 68 (227)
+||++||++|.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+...+.
T Consensus 4 ~tre~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l~~~~~~~~~~~~~~~~~ 68 (79)
T d2fbqa1 4 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLE 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999986935040999999988285578787769999999779999999999999
No 8
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.51 E-value=3.5e-14 Score=123.19 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYL 67 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~ 67 (227)
.||++|+++|.++|.++||.++||++||+++|||+|+|||||+||++|+.+++++...++...+
T Consensus 2 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l~~~~~~~~~~~~~~~v 65 (68)
T d2d6ya1 2 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKMLDLAISV 65 (68)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999998592506799999887846628988874999999999999999998608
No 9
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.50 E-value=4.4e-14 Score=122.42 Aligned_cols=64 Identities=28% Similarity=0.505 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYL 67 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~ 67 (227)
+||++|+++|.++|.++||+++||++||+++|||+|++|+||+||++|+.++++...+......
T Consensus 5 ~~r~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~~~~~~~~~~~ 68 (71)
T d1ui5a1 5 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLA 68 (71)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998594626799999987948769998982999999999999999999998
No 10
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.50 E-value=2.6e-14 Score=124.18 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227)
+||++|+++|.++|.++||.++|+++||+++|||+|+|||||+||++|+.+++++..+++...++..
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~l~~~ 73 (76)
T d2fd5a1 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGEL 73 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998491305699999983899550042089999999999999999999998767
No 11
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=99.50 E-value=5e-14 Score=122.01 Aligned_cols=66 Identities=35% Similarity=0.441 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
++|++||++|.++|.++||+++|+++||+++|||+|++||||+||++|+.++++...+.+.+.+..
T Consensus 1 d~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~ 66 (71)
T d1jt6a1 1 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKK 66 (71)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999859140679999998785875998888499999999999999999999999
No 12
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=99.50 E-value=6e-14 Score=121.44 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLD 68 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~ 68 (227)
+||++||+||.++|.++||++ |+++||+++|||+|+|||||+||++|+.+++++..+.+.+.+.
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~-t~~~Ia~~agvs~~~~Y~~F~sK~~L~~a~~~~~~~~~~~~~~ 75 (88)
T d1t33a1 12 QAKSQLIAAALAQFGEYGLHA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998754016-7999998839984431001989999999999999999999998
No 13
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=99.49 E-value=6.6e-14 Score=121.13 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227)
.|||+|+++|.++|.++||+++||++||+++|||+|++|+||+||++|+.++++...+.+...++.+
T Consensus 1 tt~e~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 67 (69)
T d2np5a1 1 TSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSEV 67 (69)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9499999999999998491406799999883988879988883999999999999999999999875
No 14
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.49 E-value=4.4e-14 Score=122.46 Aligned_cols=66 Identities=27% Similarity=0.413 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
.||++||++|.++|.++||+++||++||+++|||+|++|+||+||++|+.++++...+.+...+..
T Consensus 5 ~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~~~~~~~~~ 70 (75)
T d3c07a1 5 QTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVRE 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999749140779999998793987999898599999999999999999999999
No 15
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=99.49 E-value=3.6e-14 Score=123.09 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3779999999999998728103657999998577877899983448999999999999999998752
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
|+||++|+++|.++|.++||+++|+++||+++|||+|+||+||+||++|+.+++.++.+++...++.
T Consensus 2 ~~rR~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~~~~~~~~~~~~~~ 68 (75)
T d2id6a1 2 LSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFEN 68 (75)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999999839351679999988499888998888799999999999999999999999
No 16
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=99.49 E-value=6.4e-14 Score=121.21 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
.+|++|+++|.++|.++||.++||++||+++|||+|++|+||+||++|+.++++...+.+...++.
T Consensus 4 ~rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~~K~~l~~~~~~~~~~~~~~~l~a 69 (72)
T d1pb6a1 4 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKA 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999859250679999998697867999888699999999999999999999988
No 17
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=99.48 E-value=1.4e-13 Score=118.73 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7999999999999872810365799999857787789998344899999999999999999875221
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE 71 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~ 71 (227)
.|++||++|.++|.++||.++||++||+++|||+|++|+||+||++|+.+++++..+.+...+....
T Consensus 2 r~~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~ 68 (72)
T d1vi0a1 2 KYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDI 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999985904155999999879498799888839999999999999999999999998
No 18
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=99.47 E-value=9.6e-14 Score=119.90 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77999999999999872810365799999857787789998344899999999999999999875221
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIPE 71 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~ 71 (227)
.||++||++|.++|.++||.++||++||+++|||+|++|+||+||++|+.++++...+++...++...
T Consensus 11 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~~ 78 (81)
T d1rkta1 11 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999985925177999999869498899888849999999999999999999999987
No 19
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=99.47 E-value=2.1e-14 Score=124.86 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998728103657999998577877899983448999999999999999998752
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
||+||++|.++|.++||+++||++||+++|||+|+||+||+||++|+.++++++.+.+...++.
T Consensus 2 re~iL~aA~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~ 65 (69)
T d2i10a1 2 DQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEE 65 (69)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999879062779999998687862998888599999999999999999999999
No 20
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=99.47 E-value=6.8e-14 Score=121.03 Aligned_cols=56 Identities=25% Similarity=0.507 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 77999999999999872810365799999857787789998344899999999999
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEY 59 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~ 59 (227)
+||++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.++++++
T Consensus 4 ~tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~ 59 (73)
T d2fx0a1 4 QTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKY 59 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89999999999999986935176999999878486499988849999999999997
No 21
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=99.47 E-value=8.9e-14 Score=120.15 Aligned_cols=66 Identities=27% Similarity=0.487 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 779999999999998728103657999998577877899983448999999999999999998752
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
.+|++||++|.++|.++||.++||++||+++|||+|+||+||+||++|+.++++++.+++......
T Consensus 2 err~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F~~K~~L~~~~~~~~~~~~~~~~~~ 67 (72)
T d2g3ba1 2 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSE 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999839240779999988596977999888399999999999999999999887
No 22
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.47 E-value=1.1e-13 Score=119.55 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37799999999999987281036579999985778778999834489999999999999999987
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYL 67 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~ 67 (227)
-.||++|+++|.++|.++||.++|+++||+++|||+|+||+||+||++|+.+++++..+.+...+
T Consensus 4 ~~tr~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~v 68 (75)
T d2hyja1 4 QATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997590307699999988909899988882999999999999999999998
No 23
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.47 E-value=8e-14 Score=120.52 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227)
.||++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.+++.+..+.+...++.+
T Consensus 9 ~~r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~k~~L~~~~~~~~~~~~~~~~~~a 75 (79)
T d2oi8a1 9 QVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLRAA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998690306799999986799774455169999999999999999999999998
No 24
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=99.47 E-value=7e-14 Score=120.93 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987281036579999985778778999834489999999999999999987522
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~ 70 (227)
-||++|+++|.++|.++||+++||++||+++|||+|++||||+||++|+.+++.+..+.+...+..+
T Consensus 3 ~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~~~~~~~~~l~~a 69 (72)
T d1zk8a1 3 LTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEA 69 (72)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2399999999999998697756699999995979999989883999999999999999999999988
No 25
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=99.46 E-value=8.2e-14 Score=120.42 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999999999872810365799999857787789998344-89999999999999999987522
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN-KSDIIYEIFQEYEKLVDYYLDIP 70 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s-Ke~Ll~av~~~~~~~~~~~~~~~ 70 (227)
.||++||++|.++|.++||+++||++||+++|||+|++||||+| |++|+.++++...+.+...++..
T Consensus 2 etr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~~~Ke~L~~~~~~~~~~~~~~~~~~~ 69 (73)
T d1sgma1 2 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQS 69 (73)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999999999984924177999999868887799998599899999999999999999999997
No 26
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.46 E-value=1.6e-13 Score=118.16 Aligned_cols=65 Identities=29% Similarity=0.377 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999998728103657999998577877899983448999999999999999998752
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYLDI 69 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~~~ 69 (227)
.|++|+++|.++|.++||+++||++||+++|||+|++|+||+||++|+.+++++..+.+...++.
T Consensus 1 rR~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~l~~ 65 (70)
T d2gena1 1 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEA 65 (70)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999859240879999998795877999898799999999999999999999999
No 27
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=99.44 E-value=8e-14 Score=120.52 Aligned_cols=60 Identities=17% Similarity=0.420 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999987-28103657999998577877899983448999999999999999
Q T0611 4 KTRDKILLSSLELFND-KGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLV 63 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e-~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~ 63 (227)
-||++|+++|.++|.+ +||+++||++||+++|||+|++||||+||++|+.+++++..+++
T Consensus 2 ~tr~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~ 62 (68)
T d1z0xa1 2 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHF 62 (68)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 5899999999999987679231679999998772656899962999999999999999654
No 28
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.42 E-value=3.3e-13 Score=115.87 Aligned_cols=61 Identities=11% Similarity=0.290 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 3779999999999998728103657999998577877899983448999999999999999
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLV 63 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~ 63 (227)
-+||++|+++|.++|.++||.++||++||+++|||+|+||+||+||++|+.+++++..++.
T Consensus 5 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L~~~~~~~~~~~~ 65 (68)
T d2id3a1 5 ARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQS 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999849340779999999786887999998599999999999999975
No 29
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=99.42 E-value=1.9e-13 Score=117.61 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 73779999999999998728103657999998577877899983448999999999999999
Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLV 63 (227)
Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~ 63 (227)
.+.||++|+++|.++|.++||.++||++||+++|||+|++|+||+||++|+.+++++..+++
T Consensus 4 ~~~t~~~I~~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F~~k~~l~~~~~~~~~~~~ 65 (71)
T d2iu5a1 4 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFENDFAEL 65 (71)
T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 19999999999999999849640779999987571645897776799999999999999999
No 30
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=99.37 E-value=7.3e-13 Score=113.32 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 377999999999999872810365799999857787789998344899999999999999
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKL 62 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~ 62 (227)
-+||++|+++|.++|.++||.++||++||+++|||+|+|||||+||++|+.+++.+..++
T Consensus 3 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~~ 62 (69)
T d2fq4a1 3 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSAAAA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999983924077999999978588799999879999999999999883
No 31
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=99.37 E-value=4e-13 Score=115.26 Aligned_cols=58 Identities=29% Similarity=0.448 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998728103657999998577877899983448999999999999999
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLV 63 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~ 63 (227)
|++|+++|.++|.++||+++||++||+++|||+|++|+||+||++|+.+++++..+++
T Consensus 1 R~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~K~~L~~~~~~~~~~~~ 58 (62)
T d2vkva1 1 KSKVINSALELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAVEILARH 58 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9998999999999839351789999988098888999888799999999999999998
No 32
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.35 E-value=2.1e-13 Score=117.42 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 73779999999999998728103657999998577877899983448999999999999999
Q T0611 2 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLV 63 (227)
Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~ 63 (227)
+..||++|+++|.++|.++||.++|+++||+++|||+|++||||+||++|+.+++++...++
T Consensus 2 p~~tr~~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~~~~~~~~~i 63 (68)
T d2g7la1 2 PALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDALLGEV 63 (68)
T ss_dssp CCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 80359999999999999849030789999999782876762877599999999999999770
No 33
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=99.34 E-value=4.4e-13 Score=114.98 Aligned_cols=57 Identities=19% Similarity=0.427 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 79999999999998728103657999998577877899983448999999999999999
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLV 63 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~ 63 (227)
||++|+++|.++|.++| ++||++||+++|||+|+|||||+||++|+.++++++..++
T Consensus 2 ~R~~Il~aa~~l~~~~G--~~ti~~Ia~~agvs~~~iY~~F~~K~~L~~~v~~~~~~~~ 58 (65)
T d2g7ga1 2 DRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREI 58 (65)
T ss_dssp CHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999997867--9789999988570613131158999999999999999998
No 34
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.30 E-value=3.4e-13 Score=115.76 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987281036579999985778778999834489999999999999999987
Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYEKLVDYYL 67 (227)
Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~~~~~~~~ 67 (227)
||++|.++|.++||+++||++||+++|||+|+|||||+||++|+.++++...+ +.+.+
T Consensus 1 Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~a~~~~~~~-~~e~~ 58 (65)
T d2np3a1 1 ILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQALELPGK-IEEAI 58 (65)
T ss_dssp CHHHHHHHC---------------------------CCC-CHHHHHHHCHHHH-HHHHH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf 99999999998790407799999987868879998887999999999998740-99999
No 35
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=97.93 E-value=0.00025 Score=49.31 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 98778999999999999998778865444-44126889999999999999999999999998659888993889999999
Q T0611 74 PITLEDMTFYLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSL 152 (227)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~ 152 (227)
.+|.+.++.+++..++...++|.+.+.+. +.....+.+.....+......+....+|+++++.|.+++.++. .+..
T Consensus 2 ~~P~ealr~~i~~~~~~~~~~P~~~rl~~~E~~~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r~vdp~---~l~~ 78 (126)
T d1pb6a2 2 FAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ---HLIF 78 (126)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSCSCCHH---HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHH
T ss_conf 8889999999999999999893387999988745993168999999999999999999999977986547799---9999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999988776553100220001089999999999998712189
Q T0611 153 NVWLVITNWMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVPYLT 198 (227)
Q Consensus 153 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p~lt 198 (227)
++|.++.++..+.............+...+.+...++..++.-.+.
T Consensus 79 ~I~~~~~~y~~~~~~~~~l~g~~~~~~~~~e~~~~~v~~lvL~gl~ 124 (126)
T d1pb6a2 79 MIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIR 124 (126)
T ss_dssp HHHHHHHHHHHTHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999998189999987499868989999999999999996357
No 36
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.61 E-value=0.0037 Score=40.47 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHH
Q ss_conf 998778999999999999998778865444441268899999999999999999999999986598889938--899999
Q T0611 73 RPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE--DLRSAM 150 (227)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~--~~~~~l 150 (227)
+.++.+.++..++.+++...+|+.+.+.+.+....+|+++..+.++.+.++..+...|+..++.|..+++.+ .+..++
T Consensus 2 ~~d~~~~~r~~~~a~~~~~~~h~~vm~a~~q~a~~~~e~~~~w~~~~~~~i~~ia~~I~~~q~~G~a~~~ld~~~~A~AL 81 (120)
T d1t56a2 2 DTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATAL 81 (120)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99889999999999999999729999999999853899999999999999999999999998769999999999999999
Q ss_pred HH
Q ss_conf 99
Q T0611 151 SL 152 (227)
Q Consensus 151 ~~ 152 (227)
+.
T Consensus 82 ~~ 83 (120)
T d1t56a2 82 NL 83 (120)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 37
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=97.46 E-value=0.0042 Score=40.06 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHH-HHHHHHH
Q ss_conf 778999999999999998778865444-4412688999999999999999999999999865988899-388-9999999
Q T0611 76 TLEDMTFYLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQ-PED-LRSAMSL 152 (227)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~-~~~-~~~~l~~ 152 (227)
..+.+..+++.++..+.+++.+.+.+. ++...+|+++....+...++...+..+++++++.|.++++ +.. ....+..
T Consensus 2 a~e~L~~~i~~~~~~~~~~~~~~~i~~~E~~~~~~~~~~~i~~~~~~~~~~~~~ii~~g~~~G~ir~d~d~~~~a~~i~g 81 (117)
T d1vi0a2 2 AKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFG 81 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999999999998396567769998853799999999999999999999999999984886568998999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999988
Q T0611 153 NVWLVITNWM 162 (227)
Q Consensus 153 ~~~~~~~~w~ 162 (227)
.+-.++..|+
T Consensus 82 ~i~~~~~~w~ 91 (117)
T d1vi0a2 82 TIDETVTTWV 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999988
No 38
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.07 E-value=0.0062 Score=38.85 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 7789999999999999987788654444--41268899999999999999999999999986598889938899999999
Q T0611 76 TLEDMTFYLESVFDGLWSYRFFHRDLEY--LLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLN 153 (227)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~ 153 (227)
+.+.++..+..+++....+|..++-+.. ....++...........+..+.+..++..+++.|.+++.+..+...+...
T Consensus 3 ~~e~lr~~v~~~~~~v~~~p~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~g~~~G~~r~~~~~~~~~~i~G 82 (118)
T d2gena2 3 AEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREMPDDCFASVVIG 82 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999999095998999997600237307899999999999999999999988578886679999999999
Q ss_pred -HHHHHHHHHH
Q ss_conf -9999999887
Q T0611 154 -VWLVITNWMA 163 (227)
Q Consensus 154 -~~~~~~~w~~ 163 (227)
+.-++..|+.
T Consensus 83 ~~~~~~~~wl~ 93 (118)
T d2gena2 83 PAHDLARQWLA 93 (118)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999982
No 39
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=96.63 E-value=0.032 Score=33.46 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHH
Q ss_conf 9877899999999999999877-----886544444126889999999999999999999999998659888993--889
Q T0611 74 PITLEDMTFYLESVFDGLWSYR-----FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQP--EDL 146 (227)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~--~~~ 146 (227)
|++++.++.+++.++..+.+.. .+.....++...+|.++....+....+...+...|..+++.|.+.++. +.+
T Consensus 1 p~~~~rL~a~~~~~~~~~~~~~~~~GC~~~~~~~E~~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~~~~d~~~l 80 (118)
T d2hyja2 1 PPGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVEQA 80 (118)
T ss_dssp CTTHHHHHHHHHHHHHHHHSCSSTTSCHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 98899999999999998717999999856768977177998999999999999999999999999986987888999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q T0611 147 RSAMSLN 153 (227)
Q Consensus 147 ~~~l~~~ 153 (227)
...+...
T Consensus 81 A~~l~~~ 87 (118)
T d2hyja2 81 LFEIVAA 87 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 40
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=96.30 E-value=0.049 Score=32.08 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=43.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHH
Q ss_conf 4444412688999999999999999999999999865988899--38899999999999
Q T0611 100 DLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQ--PEDLRSAMSLNVWL 156 (227)
Q Consensus 100 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~--~~~~~~~l~~~~~~ 156 (227)
++.....++|+++..+.+.++++.+.+..+++++++.|.++++ ++.+...++..+-.
T Consensus 30 E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~~~vdp~~~A~~lva~idG 88 (123)
T d1rkta2 30 EYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATIAKFFLNMNDG 88 (123)
T ss_dssp HHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999732999999999999999999999999999859868899999999999999967
No 41
>d1ui5a2 a.121.1.1 (A:80-212) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=96.23 E-value=0.0082 Score=37.90 Aligned_cols=123 Identities=7% Similarity=-0.029 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHH
Q ss_conf 78999999999999998778865444441268899999999999999999999999986598889938--8999999999
Q T0611 77 LEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE--DLRSAMSLNV 154 (227)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~--~~~~~l~~~~ 154 (227)
++.+......+.......+ +.+...++...++.++......+..+.+.+..++.++++.|.++++.+ .+...++.
T Consensus 4 le~lvd~s~~la~~~~~dP-vvrag~eLa~~~~~~r~~l~~~f~~W~~~l~~~L~~a~~~Gel~~d~dp~~lA~~lva-- 80 (133)
T d1ui5a2 4 LEALMRLTFGMARLCVQGP-VLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVC-- 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHTTCCCCC-CCCHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH--
T ss_conf 9999999999999833374-8888999802443367788899999999999999999986997788999999999999--
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q ss_conf 99999988776553100220001089999999999998712-18988999999999985
Q T0611 155 WLVITNWMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEVP-YLTPEYRERVLALREKY 212 (227)
Q Consensus 155 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~p-~lt~~~~~~l~~l~~~~ 212 (227)
.|.+-....+.... ..++.+-+..+|.++.| +.+++.+.+|.++..+.
T Consensus 81 -----~~~G~~~lsr~~~~-----~~~L~~rl~~~w~llLp~l~~~~~~~~~~~~~~r~ 129 (133)
T d1ui5a2 81 -----SVVGTRVVGGTLEP-----AGREPRRLAEMWYILIRGMVPVTRRARYVTLAARL 129 (133)
T ss_dssp -----HHHCTTCC-------------CHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf -----99989999851476-----34289999999998703336997447999999750
No 42
>d2d6ya2 a.121.1.1 (A:75-192) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=96.15 E-value=0.018 Score=35.39 Aligned_cols=90 Identities=8% Similarity=-0.053 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999999998778865444-441268899999999999999999999999986598889938899999999999
Q T0611 78 EDMTFYLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWL 156 (227)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~ 156 (227)
+++..++..+++....+|.+.+.+. +-+...+.+ .............+..+|.+++++|.++++.+... +..++..
T Consensus 2 edL~~~a~~~fD~~~~~P~~~RL~~wEnL~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~G~fr~~~dp~~--l~~~I~a 78 (118)
T d2d6ya2 2 DDIEGWIDRLLDYHAAHPELLRLLFWEGMEYGTAE-LPHEAERQEHYARKVAAVRDGQERGVITDAIPAPD--LLFLLVA 78 (118)
T ss_dssp GGHHHHHHHHHHHHHHCTHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHHHHHHHHTTSSCCSSCHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHH
T ss_conf 32899999999999858179999999986167755-64378887789999999999998499889999999--9999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99998877655310
Q T0611 157 VITNWMAFLKTAHA 170 (227)
Q Consensus 157 ~~~~w~~~~~~~~~ 170 (227)
++.+|..+....+.
T Consensus 79 l~~~~~~~~~~~~~ 92 (118)
T d2d6ya2 79 MANWAVVVPQMKRI 92 (118)
T ss_dssp HHHHHHHCHHHHHH
T ss_pred HHHHHHHCHHHHHH
T ss_conf 99998754088776
No 43
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=95.89 E-value=0.0045 Score=39.85 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 999999998728103657999998577877899983448
Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
++.|.+++. .| .|+.+||+..|||+.|||+||+..
T Consensus 11 ~~~a~~l~~-~G---~s~~~iA~~~gVSr~TiYry~pa~ 45 (47)
T d1ijwc_ 11 QEQISRLLE-KG---HPRQQLAIIFGIGVSTLYRYFPAS 45 (47)
T ss_dssp HHHHHHHHH-TT---CCHHHHHHHHTCCHHHHHHHSCST
T ss_pred HHHHHHHHH-CC---CCHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 999999998-89---979999999796999998557755
No 44
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=95.87 E-value=0.077 Score=30.64 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=47.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4444126889999999999999999999999998659888993889999999999999998877655310
Q T0611 101 LEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTAHA 170 (227)
Q Consensus 101 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~ 170 (227)
+......++++.+...+...++...+..+|++|+++|.++..++.+......++ ..|+..|.....
T Consensus 30 F~~~~~~~~e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~f~~~d~~~~~~~il~~----lng~~~Wy~~~g 95 (115)
T d1jt6a2 30 FYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANA----VNGIVTFTHEQN 95 (115)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSCHHHHHHHHHHH----HHHHHHSCTTSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH----HHHHHHHHCCCC
T ss_conf 998330599999999999999999999999999987941066799999999999----999999810679
No 45
>d2g3ba2 a.121.1.1 (A:74-189) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=95.80 E-value=0.074 Score=30.77 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=44.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHH
Q ss_conf 65444441268899999999999999999999999986598889--9388999999999999
Q T0611 98 HRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQP--QPEDLRSAMSLNVWLV 157 (227)
Q Consensus 98 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~--~~~~~~~~l~~~~~~~ 157 (227)
+.++......+|.+++.+.+...++...+..+|+.+++.|.+.+ |++.....+...+-.+
T Consensus 28 W~~~~a~A~~dp~~~~~~~~~~~~~~~~l~~ii~~g~~~G~~~~~~D~~~~A~~L~AliDGl 89 (116)
T d2g3ba2 28 WNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEGL 89 (116)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999997415688999999999999999999999985588588889999999999999999
No 46
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=95.14 E-value=0.13 Score=28.88 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHHH
Q ss_conf 789999999999999987--78865444441268899999999999999999999999986598889938--89999999
Q T0611 77 LEDMTFYLESVFDGLWSY--RFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE--DLRSAMSL 152 (227)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~--~~~~~l~~ 152 (227)
-.++..+++.+...+... ..+.+.+......+|++...+.++.......+..+++++++.|.++++.+ .+...+..
T Consensus 7 r~DL~~~l~~~~~~l~~p~~~~~~~~l~ae~~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~~~~d~~~~~d~l~g 86 (123)
T d2id3a2 7 EEDLRANARLVVRTLDDPRQGRLFRALIAASLCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVPDGTDPHGVVAAVSA 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999709506899999999846888999999999999999999999999983888987538899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHH
Q ss_conf 999999998877655310022000108999999999999871
Q T0611 153 NVWLVITNWMAFLKTAHAAEEPASLSLTELKQGIYQVLTLEV 194 (227)
Q Consensus 153 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (227)
.+ |..-. ......+..++.+.+..++...+
T Consensus 87 ~l------~~R~L------~~~~~~d~~~~~~~v~~~l~~~~ 116 (123)
T d2id3a2 87 PL------YYALL------NTGRSLTEADADRAARAASTAAR 116 (123)
T ss_dssp HH------HHHHH------TTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HH------HHHHH------HCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99------99999------65899999999999999999985
No 47
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=94.16 E-value=0.22 Score=27.21 Aligned_cols=75 Identities=7% Similarity=-0.079 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHH
Q ss_conf 87789999999999999987----788654444412688999999999999999999999999865988899--388999
Q T0611 75 ITLEDMTFYLESVFDGLWSY----RFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQ--PEDLRS 148 (227)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~--~~~~~~ 148 (227)
+|.+.+..++..+....... +.+.....++...++.++......++.+...+...|+.+++.|.+.++ +.....
T Consensus 2 dP~~rL~a~~~~~~~~~~~~~~~gCl~~~~a~E~~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g~~~~~~d~~~lA~ 81 (116)
T d2g7sa2 2 DPLEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAE 81 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99999999999999986088999987989987661088899999999999999999999999988689787635789899
Q ss_pred H
Q ss_conf 9
Q T0611 149 A 149 (227)
Q Consensus 149 ~ 149 (227)
.
T Consensus 82 ~ 82 (116)
T d2g7sa2 82 I 82 (116)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 48
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=94.07 E-value=0.021 Score=34.80 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 3657999998577877899983448999999999999
Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQEYE 60 (227)
Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~~~ 60 (227)
++|+.|||+++|||++|+-+.+.++..+=.+.-+++.
T Consensus 1 NvTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~ 37 (57)
T d2hsga1 1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVL 37 (57)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9699999989895999999996898867989999999
No 49
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=93.51 E-value=0.28 Score=26.39 Aligned_cols=77 Identities=8% Similarity=-0.066 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHH
Q ss_conf 789999999999999987-----788654444412688999999999999999999999999865988899--3889999
Q T0611 77 LEDMTFYLESVFDGLWSY-----RFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQ--PEDLRSA 149 (227)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~--~~~~~~~ 149 (227)
.+.+..++...++.+.+. +++.....++...++.++.......+++...+...|+++++.|.++++ +..+...
T Consensus 4 ~eai~~~l~~~i~~~~~~~~p~GCl~~~~~~E~~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~~~d~~~lA~~ 83 (116)
T d2i10a2 4 HEAVLDFLTGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPAGTDCTALARY 83 (116)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCSSCBTTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999999999999748999997799985753056609999999999999999999999999876899887789999999
Q ss_pred HHHH
Q ss_conf 9999
Q T0611 150 MSLN 153 (227)
Q Consensus 150 l~~~ 153 (227)
+...
T Consensus 84 l~~~ 87 (116)
T d2i10a2 84 VMAA 87 (116)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 50
>d2fq4a2 a.121.1.1 (A:78-192) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=93.23 E-value=0.31 Score=26.08 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9999999999999987-7886544444126889999999-9999999999999999986598889938
Q T0611 79 DMTFYLESVFDGLWSY-RFFHRDLEYLLDSDPRLRQDYR-EFTNRCLAAINRIFAKLADAGIIQPQPE 144 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~i~~G~l~~~~~ 144 (227)
++..++..+.+.+... ....+.+.....++|++.+.+. .+.......+..+++++++.|.++++.+
T Consensus 6 DL~~~~~~~~~~l~~~~g~~~~~li~e~~~~p~l~~~~~~~~~~~~~~~~~~~l~ra~~rGel~~d~d 73 (115)
T d2fq4a2 6 DILIHATSLANFLISREGTIINELVGEGQFDSKLAEEYRVRYFQPRRLQAKQLLEKGIKRGELKENLD 73 (115)
T ss_dssp HHHHHHHHHHHHHHSTTTTHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCTTCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999982953799999999865688899999999889999999999999998499886678
No 51
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.61 E-value=0.036 Score=33.06 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=26.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 6579999985778778999834489999999999
Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227)
Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227)
.||.|||+.+|||++|+-+.|.++..+=.+.-+.
T Consensus 1 ATi~dvA~~agVS~sTVSr~ln~~~~vs~~tr~r 34 (57)
T d1qpza1 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNA 34 (57)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9899999998959999999977998568999999
No 52
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.51 E-value=0.03 Score=33.68 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 36579999985778778999834489999999999
Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227)
Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227)
.+||.|||+.+|||++|+-+.|.++..+=.+.-+.
T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~r 36 (59)
T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREK 36 (59)
T ss_dssp CCCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 88899999897979999999977998679999999
No 53
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1biba1 d2ewna1 d1hxda1
Probab=91.96 E-value=0.13 Score=28.96 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 77999999999999872810365799999857787789998344899
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
+++.+||+ ++.++|+ +|.++||++.|||+.|+++|...-++
T Consensus 5 ~~~~~IL~----~L~~~~~--~s~~eLa~~l~vS~~Tv~r~i~~L~~ 45 (63)
T d1biaa1 5 TVPLKLIA----LLANGEF--HSGEQLGETLGMSRAAINKHIQTLRD 45 (63)
T ss_dssp HHHHHHHH----HHTTSSC--BCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHCCCC--CCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 68899999----9982898--37789998709998357899999987
No 54
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=91.55 E-value=0.2 Score=27.54 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 97377999999999999872810365799999857787789998344
Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
+++..|++|+++. +. +.|.++||++.|||.++++...+-
T Consensus 17 Ls~dlR~rIv~~~-----~~---G~s~r~iA~~~~VS~~tV~k~l~r 55 (123)
T d1pdnc_ 17 LPNNIRLKIVEMA-----AD---GIRPCVISRQLRVSHGCVSKILNR 55 (123)
T ss_dssp CCHHHHHHHHHHH-----HT---TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----HH---CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9899999999999-----80---489999999989699999999999
No 55
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.44 E-value=0.1 Score=29.71 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 999999999998728103657999998577877899983448
Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
..|++.+.+-+.++=-+..|+++||+.+|+|+..+.+.|+..
T Consensus 2 ~~ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~~ 43 (54)
T d1d5ya1 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (54)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 799999999998744899999999999892999999999999
No 56
>d3c07a2 a.121.1.1 (A:90-235) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=91.29 E-value=0.52 Score=24.43 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--H-HHHHHHHH
Q ss_conf 78999999999999998778865444441268899999999999999999999999986598889938--8-99999999
Q T0611 77 LEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPE--D-LRSAMSLN 153 (227)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~--~-~~~~l~~~ 153 (227)
.+++...++..++....|+.+...+.....+...=...+.......++....+++++++.+..+..+. . ....+-..
T Consensus 4 ~~RL~~~l~t~Ldvl~pyr~F~~~~l~~a~~P~~plspfs~es~~aR~~a~~l~~e~i~~~~~~~~~~l~~~lp~l~W~~ 83 (146)
T d3c07a2 4 EARLAGVLKVWLDIATPYHEFAVQFFKNAADPDSPLSPFSPESEHARVEAIGIHRAVLAGAKTKVPEELRDILPELMWLS 83 (146)
T ss_dssp HHHHHHHHHHHHHHHGGGHHHHHHHHHHHTCTTSTTSTTSGGGHHHHHHHHHHHHHHHHTSSSCCCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999998334189999999860698888888882348999999999999983378777767898888999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHH---HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999998877655310022000108999999---999999871-21898899999999998541020
Q T0611 154 VWLVITNWMAFLKTAHAAEEPASLSLTELKQG---IYQVLTLEV-PYLTPEYRERVLALREKYRPTLP 217 (227)
Q Consensus 154 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~-p~lt~~~~~~l~~l~~~~~~~l~ 217 (227)
.+.+..+|+. + .....+. +...++.+ +.+++++-+ |.+.+--++.+ .|.+.+.+++.
T Consensus 84 ~l~il~fW~~-D---~S~~~ek--T~~lieksv~l~~~lI~ls~~p~~r~~~~~~~-~l~~~~~~~~~ 144 (146)
T d3c07a2 84 QMGLVLYWIF-D---RTEGRER--SYRLAERGARLTARGVVLARFRVLRPLVREVH-ELFTDFLPGMT 144 (146)
T ss_dssp HHHHHHHHHH-C---CSTTSHH--HHHHHHHHHHHHHHHHHHTTSTTTHHHHHHHH-HHHHHHSSSSC
T ss_pred HHHHHHHHHC-C---CCCCHHH--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHC
T ss_conf 9999999964-8---9800678--99999988889998998505853146789999-99999842012
No 57
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=90.78 E-value=0.18 Score=27.93 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 99999999998728103657999998577877899983448
Q T0611 8 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 8 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
..++.+.+...++=-...|+.+||+.+|+|+..+++.|+..
T Consensus 3 ~~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~ 43 (54)
T d1bl0a1 3 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 43 (54)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998654799999999999893999999999999
No 58
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.38 E-value=0.3 Score=26.21 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 97377999999999999872810365799999857787789998344
Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
+++..|+||+++. + ++.|.++||++.+||++++...-.-
T Consensus 15 ls~DLR~Riv~~~-----~---~G~s~r~aA~rf~VS~s~v~k~l~r 53 (63)
T d1k78a1 15 LPDVVRQRIVELA-----H---QGVRPCDISRQLRVSHGCVSKILGR 53 (63)
T ss_dssp CCHHHHHHHHHHH-----H---TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----H---CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999999-----9---5998999999959779999999999
No 59
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=90.20 E-value=0.38 Score=25.44 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHCC
Q ss_conf 79999999999998728103657999998577-87789998344
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAI-SPGNLYYHFRN 47 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGv-s~gtlY~~F~s 47 (227)
..++||+.-.+-+.++||. -|+++|++..|+ |++++++|...
T Consensus 6 rQ~~vL~~I~~~~~~~G~~-Ps~rei~~~~g~~S~stv~~~l~~ 48 (71)
T d1jhfa1 6 RQQEVFDLIRDHISQTGMP-PTRAEIAQRLGFRSPNAAEEHLKA 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHSSC-CCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999999999999982889-889999977299999999999999
No 60
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.00 E-value=0.059 Score=31.49 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 65799999857787789998344899
Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
+||.|||+.+|||++|+-+.+.++.+
T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~ 26 (59)
T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAK 26 (59)
T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGG
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 97999999979699999999849987
No 61
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=89.86 E-value=0.25 Score=26.80 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 3779999999999998728103657999998577877899983448
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
-.||.+||..- .+ | ..|..+||+..|+|++++++|-..-
T Consensus 14 ~~~R~~Il~~L----~~-~--~~~~~ela~~l~~s~~~v~~HL~~L 52 (194)
T d2p4wa1 14 NETRRRILFLL----TK-R--PYFVSELSRELGVGQKAVLEHLRIL 52 (194)
T ss_dssp SHHHHHHHHHH----HH-S--CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----HH-C--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999----80-8--9879999999890998999999999
No 62
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=89.56 E-value=0.33 Score=25.88 Aligned_cols=45 Identities=9% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 97377999999999999872810365799999857787789998344
Q T0611 1 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 1 ~~~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
|.|...+|...- ++++.++. ..+|.+++|+..|||+.|++++...
T Consensus 1 M~~~k~eR~~~I-l~~L~~~~-~~vs~~~La~~l~VS~~TI~rdi~~ 45 (65)
T d1j5ya1 1 MKTVRQERLKSI-VRILERSK-EPVSGAQLAEELSVSRQVIVQDIAY 45 (65)
T ss_dssp CHHHHHHHHHHH-HHHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 960099999999-99999859-9785999999979899999999999
No 63
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=89.10 E-value=0.22 Score=27.26 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 77999999999999872810365799999857787789998344
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
.||.+||+ ++. +| ..|..+||+.+|+|++++|+|-..
T Consensus 19 p~R~~Il~----~L~-~~--~~s~~ela~~lg~s~~~v~~hl~~ 55 (190)
T d1ulya_ 19 DTRRKILK----LLR-NK--EMTISQLSEILGKTPQTIYHHIEK 55 (190)
T ss_dssp HHHHHHHH----HHT-TC--CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHH----HHH-HC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999----998-19--987999999989199999999999
No 64
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=88.08 E-value=0.33 Score=25.85 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 9999872810365799999857787789998344
Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
++.|++++ ...|..+||++.|++++++|++-.+
T Consensus 11 L~~~a~~~-~~~s~~eia~~~~~~~st~~rll~t 43 (75)
T d1mkma1 11 LDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVV 43 (75)
T ss_dssp HHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99998579-9989999999979199999999999
No 65
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=85.70 E-value=0.44 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 7999999999999872810365799999857787789998344
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
++.+||. ++.++++ +|..++|+++|||+.|++.|...
T Consensus 6 ~~~~iL~----~L~~~~~--~s~~eLa~~l~vS~~ti~r~i~~ 42 (63)
T d1biaa1 6 VPLKLIA----LLANGEF--HSGEQLGETLGMSRAAINKHIQT 42 (63)
T ss_dssp HHHHHHH----HHTTSSC--BCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHH----HHHHCCC--CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999----9997895--87999999989399999999999
No 66
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=85.14 E-value=0.96 Score=22.39 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 9999999999998728103657999998577877899983448999
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
++.|-+.=.++-.++ +.|..++|+.+|||+++++.+..+|-..
T Consensus 6 ~~~ig~~lr~~R~~~---g~sq~~lA~~~gis~~~i~~~E~g~~~p 48 (79)
T d1y9qa1 6 KSQIANQLKNLRKSR---GLSLDATAQLTGVSKAMLGQIERGESSP 48 (79)
T ss_dssp HHHHHHHHHHHHHHT---TCCHHHHHHHHSSCHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 999999999999982---9999999998771164899998699899
No 67
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=84.40 E-value=0.45 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=30.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 99998728103657999998577877899983448999
Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
..+|.-+-|++.|..+||+.+|||.++++.+...=...
T Consensus 22 R~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~ 59 (106)
T d1s7oa_ 22 MNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKI 59 (106)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99989899919999999999896999999999999999
No 68
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=84.39 E-value=1.3 Score=21.45 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 7999999999999872810365799999857787789998344
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
+.|..|.+=..+-.++| .++..+||+.+|||++++..-.+.
T Consensus 4 s~EdYLk~I~~l~~~~~--~v~~~~iA~~L~vs~~SVs~mikr 44 (61)
T d2ev0a1 4 SMEDYIEQIYMLIEEKG--YARVSDIAEALAVHPSSVTKMVQK 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHS--SCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 29999999999983589--750999999958995159999999
No 69
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=84.24 E-value=1.3 Score=21.48 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 79999999999998728103657999998577877899983448999
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
-++.|=+.=.++-.++| .|..++|+.+|||++++.++-.++...
T Consensus 7 ~~~~~g~~ik~~R~~~g---ltq~~lA~~~gis~~~i~~~e~g~~~p 50 (77)
T d2b5aa1 7 IKRKFGRTLKKIRTQKG---VSQEELADLAGLHRTYISEVERGDRNI 50 (77)
T ss_dssp HHHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 99999999999999809---999999989797999999998699899
No 70
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=84.24 E-value=0.45 Score=24.88 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 377999999999999872810365799999857787789998344
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
-.||-+||..- . + ...|+.+|++..|+|++++.+|.+-
T Consensus 22 ~p~Rl~Il~~L----~-~--~~~~v~ela~~l~is~stvS~HL~~ 59 (98)
T d1r1ta_ 22 DPNRLRLLSLL----A-R--SELCVGDLAQAIGVSESAVSHQLRS 59 (98)
T ss_dssp CHHHHHHHHHH----T-T--CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH----H-C--CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999----8-1--9967999999989298899999999
No 71
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=84.02 E-value=1.3 Score=21.46 Aligned_cols=44 Identities=7% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHHHHCCHH
Q ss_conf 7999999999999872810365799999857--78778999834489
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLA--ISPGNLYYHFRNKS 49 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aG--vs~gtlY~~F~sKe 49 (227)
..+.||++-.+.+.+.|+ .++.++|++..| +|.+|+.+|...=|
T Consensus 5 Rq~~IL~~Ive~y~~~g~-Pv~s~~i~~~~~l~~S~aTIRn~m~~LE 50 (87)
T d1stza1 5 RQRKVLYCIVREYIENKK-PVSSQRVLEVSNIEFSSATIRNDMKKLE 50 (87)
T ss_dssp HHHHHHHHHHHHHHHHCS-CBCHHHHHHHSCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999999999998098-4679999987088989899999999999
No 72
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=83.93 E-value=1 Score=22.12 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 377999999999999872810365799999857787789998344
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
=.||-+|+..- .+ | ..++.+|++..|+|.+++.+|.+-
T Consensus 17 d~~Rl~Il~~L----~~-~--~~~v~el~~~l~~s~~~vS~HL~~ 54 (94)
T d1r1ua_ 17 DYNRIRIMELL----SV-S--EASVGHISHQLNLSQSNVSHQLKL 54 (94)
T ss_dssp SHHHHHHHHHH----HH-C--CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999----72-9--956999999988787789999999
No 73
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=83.45 E-value=1.3 Score=21.39 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH-HHH
Q ss_conf 3779999999999998728103657999998577877899983448-999
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK-SDI 51 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK-e~L 51 (227)
|+.|..|...=.++..++ +.|-.++|+.+|||++.++....+| ...
T Consensus 1 M~~~~~l~~~i~~~r~~~---gltq~elA~~~gv~~~~is~ie~g~~~~~ 47 (69)
T d2a6ca1 1 MKMRSQLLIVLQEHLRNS---GLTQFKAAELLGVTQPRVSDLMRGKIDLF 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT---TCCHHHHHHHHTSCHHHHHHHHTTCGGGC
T ss_pred CCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHCCHHHHHHHHCCCCCCH
T ss_conf 967999999999999996---99999999998747847999976652010
No 74
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=82.22 E-value=0.73 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 3657999998577877899983
Q T0611 24 NITTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F 45 (227)
|.|+.+||++.|||.++||+.-
T Consensus 23 g~s~~~vA~~lGIs~~tl~~W~ 44 (89)
T d2jn6a1 23 GASLQQIANDLGINRVTLKNWI 44 (89)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9859999999798988999999
No 75
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=81.82 E-value=1.6 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 9999872810365799999857787789998344
Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
...|.-+=|.+.|..+||+..|||+++++.+..-
T Consensus 24 R~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~R 57 (106)
T d1xsva_ 24 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRR 57 (106)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999990875999999989599999999999
No 76
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=81.41 E-value=1.1 Score=22.04 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999999999998728103-6579999985778778999834
Q T0611 6 RDKILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
|-.++.+-..| .+.|... .-+..+|.+.|||++|||++|.
T Consensus 35 RL~~l~~V~~L-~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~ 75 (99)
T d2ezla_ 35 WLPAVQAADEM-LNQGISTKTAFATVAGHYQVSASTLRDKYY 75 (99)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999-986970899999999995988999999999
No 77
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=81.02 E-value=1.2 Score=21.73 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 7999999999999872810365799999857787789998344
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
||-+||. .+.++| ..|+.+||+..|++++++++|.+.
T Consensus 17 ~r~~IL~----~L~~~~--~~~~~eLa~~l~is~~~vs~~l~~ 53 (100)
T d1ub9a_ 17 VRLGIMI----FLLPRR--KAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp HHHHHHH----HHHHHS--EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHH----HHCCCC--CEEHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9999998----760479--901999999986254323099998
No 78
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=80.66 E-value=0.76 Score=23.17 Aligned_cols=33 Identities=9% Similarity=-0.094 Sum_probs=26.4
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999987281036579999985778778999834
Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
.+.|.-.=|.+.|..+||+.+|+|.+++..+..
T Consensus 27 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ 59 (71)
T d1rp3a2 27 KLVIQLIFYEELPAKEVAKILETSVSRVSQLKA 59 (71)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999986848999999997989999999999
No 79
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=80.51 E-value=0.66 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 036579999985778778999834
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
++.+..+||+++||++.++|+-.+
T Consensus 17 ~G~gat~IAk~lgI~R~SVYR~L~ 40 (43)
T d1gdta1 17 QGLGASHISKTMNIARSTVYKVIN 40 (43)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 489899999997987999999986
No 80
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=80.48 E-value=0.58 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 0365799999857787789998344
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
.|.|..+||+.+|+|..|+.+|..+
T Consensus 20 ~G~s~~eIA~~l~iS~~TV~~~~~~ 44 (67)
T d1a04a1 20 QGLPNKMIARRLDITESTVKVHVKH 44 (67)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 6799899999978888899999999
No 81
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=79.24 E-value=2 Score=20.06 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 799999999999987281036579999985778778999834
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
|-|.-|.+=..+-.++| .++..+||+.+|||++++..-.+
T Consensus 6 s~EdYL~~I~~L~~~~~--~v~~~~iA~~L~vs~~SVt~mvk 45 (63)
T d2isya1 6 TTEMYLRTIYDLEEEGV--TPLRARIAERLDQSGPTVSQTVS 45 (63)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 89999999999985589--77099999996899443999999
No 82
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=79.06 E-value=1.5 Score=21.02 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 799999999999987281036579999985778778999834
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
||-+|+..- ... ...|+.+|++..|+|.+++.+|.+
T Consensus 32 ~Rl~Il~~L----~~~--~~~~v~ela~~l~~s~s~vS~HL~ 67 (108)
T d1u2wa1 32 NRAKITYAL----CQD--EELCVCDIANILGVTIANASHHLR 67 (108)
T ss_dssp HHHHHHHHH----HHS--SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHH----HHC--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999----868--991499999888557257999999
No 83
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=78.62 E-value=0.73 Score=23.28 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 0365799999857787789998344
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
.|.|..+||+++|+|..|+..|..+
T Consensus 18 ~G~s~~eIA~~L~is~~TV~~~~~~ 42 (67)
T d1fsea_ 18 QDKTTKEIASELFISEKTVRNHISN 42 (67)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 3698999999988888899999999
No 84
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=78.26 E-value=2.1 Score=19.85 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.6
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH-CCHH
Q ss_conf 9998728103657999998577877899983-4489
Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHF-RNKS 49 (227)
Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F-~sKe 49 (227)
++..+.|-..-|-++||+++|||+.++|++= .+|.
T Consensus 27 e~~~~~~~ekktqeqiAeelGisr~tLyrWrt~dk~ 62 (120)
T d2ao9a1 27 ELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQD 62 (120)
T ss_dssp HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHH
T ss_conf 001100033414999999958018889887606626
No 85
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=78.03 E-value=0.77 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 03657999998577877899983448
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
.|.|..+||+++|+|..|+.+|..+-
T Consensus 18 ~G~s~~eIA~~l~iS~~TV~~~~~~i 43 (65)
T d1l3la1 18 VGKTMEEIADVEGVKYNSVRVKLREA 43 (65)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 36988899999788899999999999
No 86
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=77.82 E-value=1.1 Score=21.98 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999987281036579999985778778999834
Q T0611 13 SLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 13 A~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
-.++|.-+=|.+-|..+||+.+|+|.+|+..+..
T Consensus 23 ~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ 56 (68)
T d1or7a1 23 LRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 56 (68)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999098999999998949999999999
No 87
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=77.27 E-value=0.84 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 10365799999857787789998344
Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
..|.|..+||..+|+|..|+..|..+
T Consensus 25 ~~G~s~~eIA~~l~iS~~TV~~~~~~ 50 (70)
T d1yioa1 25 IRGLMNKQIAGELGIAEVTVKVHRHN 50 (70)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 82899999998979799999999999
No 88
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=77.16 E-value=2.2 Score=19.63 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 036579999985778778999834
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
+..|..+||+..|+|+++++..-.
T Consensus 40 ~plt~~ela~~l~vsk~~vs~~l~ 63 (151)
T d1ku9a_ 40 KPLTISDIMEELKISKGNVSMSLK 63 (151)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 892899999986777024999999
No 89
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=76.99 E-value=2.3 Score=19.60 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999999999999872810365799999857787789998344899
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
.-.||+.+++-|.++|.. -++|.+.+..|.+.+.||.-|++.-.
T Consensus 44 HW~vI~~lR~~y~~~~~~-P~~R~l~K~~~~~~k~L~~LFp~~Pa 87 (103)
T d2v4jc1 44 HQKIIDFLQDYYKKNGIA-PMVRILSKNTGFKLKEVYELFPSGPG 87 (103)
T ss_dssp HHHHHHHHHHHHHHHSSC-CCHHHHHHHHCCCHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCHHHHHHHHCHHHHHHHHHCCCCHH
T ss_conf 999999999999996899-70999999856027699997699889
No 90
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=75.97 E-value=2 Score=19.99 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 97377-9999999999998728103657999998577877899983448
Q T0611 1 MTMKT-RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 1 ~~~~T-R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
|-|+- -.+||++ +.+. ...|.++||+.+|+|..+++++...-
T Consensus 1 mklD~~D~~IL~~----L~~n--~r~s~~~iA~~lgis~~tv~~Ri~~L 43 (63)
T d2cfxa1 1 MKLDQIDLNIIEE----LKKD--SRLSMRELGRKIKLSPPSVTERVRQL 43 (63)
T ss_dssp CCCCHHHHHHHHH----HHHC--SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH----HHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9878999999999----9983--99999999999896878999999999
No 91
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=75.77 E-value=2.4 Score=19.37 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 999999872810365799999857787789998344
Q T0611 12 SSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 12 aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
.-++++.++| .+|-.+||+..|+|++|+.++...
T Consensus 10 ~Il~~l~~~g--~~sr~eLa~~~glS~~Tv~~~l~~ 43 (71)
T d1z05a1 10 RVYKLIDQKG--PISRIDLSKESELAPASITKITRE 43 (71)
T ss_dssp HHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999859--948999999988788789999999
No 92
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=75.76 E-value=0.92 Score=22.54 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHH-----CCHHHHHHHH
Q ss_conf 8103657999998577877899983-----4489999999
Q T0611 21 GERNITTNHIAAHLAISPGNLYYHF-----RNKSDIIYEI 55 (227)
Q Consensus 21 G~~~~t~~~IA~~aGvs~gtlY~~F-----~sKe~Ll~av 55 (227)
-....|+++||+++|||+.|+++.. .|=.|+-.++
T Consensus 33 ~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k~~l 72 (83)
T d2o3fa1 33 KAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRV 72 (83)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9988319999999798998999999995899899999999
No 93
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=75.43 E-value=1.6 Score=20.66 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=22.9
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 99872810365799999857787789998344
Q T0611 16 LFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 16 lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
+...+| ..|+.+||+.+|++++++.++-..
T Consensus 30 L~~~~~--~~t~~eLa~~~~i~~~tvs~~l~~ 59 (109)
T d2d1ha1 30 MVEIEK--PITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHHHCS--CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHCCC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 997698--988999999988567699999999
No 94
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=74.44 E-value=1.2 Score=21.68 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 036579999985778778999834489
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
.+.|..++|+.+|||+++++++-.++.
T Consensus 13 ~gltq~~la~~~gis~~~i~~~E~g~~ 39 (68)
T d1b0na2 13 KGYSLSELAEKAGVAKSYLSSIERNLQ 39 (68)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 299999999897979999999985998
No 95
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=74.19 E-value=1.3 Score=21.49 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 1036579999985778778999834489
Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
-.+.|..++|+.+|||++++..+-.+|.
T Consensus 12 ~~g~sq~elA~~~gvs~~~is~~E~g~~ 39 (63)
T d1r69a_ 12 QLGLNQAELAQKVGTTQQSIEQLENGKT 39 (63)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 8499699999983739999999878989
No 96
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=74.02 E-value=2.2 Score=19.72 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+...+..+++.|.+.
T Consensus 59 ~tvs~~l~~L~~~gli~ 75 (139)
T d2a61a1 59 STVTGLVKRLEADGYLT 75 (139)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHCCEEE
T ss_conf 44269999998457256
No 97
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=73.63 E-value=2.5 Score=19.30 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=27.7
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHH
Q ss_conf 9987281036579999985778778999834489999
Q T0611 16 LFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227)
Q Consensus 16 lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227)
+-..+=-.+.|..++|+.+|||+++++.+-.++...-
T Consensus 14 ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~ 50 (69)
T d1y7ya1 14 LRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVS 50 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCB
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 9999998399999998682998989999987999999
No 98
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=73.40 E-value=1.4 Score=21.12 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 10365799999857787789998344899
Q T0611 22 ERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
-.+.|-.++|+.+|||+.++.+|=.++..
T Consensus 12 ~~gltQ~elA~~LGvs~~ti~~yE~G~r~ 40 (67)
T d2auwa1 12 RNNLSLTTAAEALGISRRMVSYYRTAHKI 40 (67)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 95999999999959989999999869999
No 99
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=73.28 E-value=1.4 Score=21.22 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 03657999998577877899983448999
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
.+.|..++|+.+|||.+++.++-.++...
T Consensus 13 ~g~tq~elA~~~gis~~~is~~e~g~~~p 41 (66)
T d1utxa_ 13 KKISQSELAALLEVSRQTINGIEKNKYNP 41 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTSCCC
T ss_pred CCCCHHHHHHHCCCCHHHHHHHHCCCCCC
T ss_conf 59999999886355798999998699899
No 100
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=72.08 E-value=2.7 Score=18.98 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.6
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 998728103657999998577877899983448
Q T0611 16 LFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 16 lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
++.+. ...|..+||+++|+|..+++++...-
T Consensus 11 ~L~~n--~r~s~~~lA~~~gls~~~v~~Ri~~L 41 (60)
T d1i1ga1 11 ILEKD--ARTPFTEIAKKLGISETAVRKRVKAL 41 (60)
T ss_dssp HHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99884--99999999999892999999999999
No 101
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=72.07 E-value=2.9 Score=18.85 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999987281036579999985778778999834
Q T0611 13 SLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 13 A~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
|++-+.+.|+ |..+||+..|+|++.+..|..
T Consensus 22 a~~~l~~~g~---s~~eiA~~~G~s~~~V~~~l~ 52 (114)
T d1r71a_ 22 FIGRELAKGK---KKGDIAKEIGKSPAFITQHVT 52 (114)
T ss_dssp HHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHCC---CHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999988099---899999997772999999999
No 102
>d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1 {Aeropyrum pernix [TaxId: 56636]}
Probab=71.28 E-value=3.1 Score=18.62 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH
Q ss_conf 99999999998728103657999998577877899983448999999
Q T0611 8 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227)
Q Consensus 8 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227)
+|+-+ +--|..+||. -|+.+|.++.|||..+++ .+-|+-|+.+
T Consensus 15 rilpt-llefekkgye-pslaeivkasgvsektff--mglkdrlira 57 (92)
T d2pg4a1 15 RILPT-LLEFEKKGYE-PSLAEIVKASGVSEKTFF--MGLKDRLIRA 57 (92)
T ss_dssp HHHHH-HHHHHHTTCC-CCHHHHHHHHCCCHHHHH--TTHHHHHHHT
T ss_pred HHHHH-HHHHHHCCCC-CCHHHHHHHCCCCHHHHH--HHHHHHHHHH
T ss_conf 99889-9999862688-319999987285366775--4438899995
No 103
>d1xs9a_ i.11.1.1 (A:) Ternary complex formed between MarA, the alpha-CTD of RNA polymerase and DNA {Escherichia coli [TaxId: 562]}
Probab=70.57 E-value=0.39 Score=25.31 Aligned_cols=74 Identities=9% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999999999998728103657999998577877899983448999-999999999999998752217998778999
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDI-IYEIFQEYEKLVDYYLDIPEDRPITLEDMT 81 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sKe~L-l~av~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
.+..++.+.+.+.++=-...|+.+||+.+|+|+.+|.+.|+..-++ ....+.. .++.........+..++.++.
T Consensus 9 ~~~~i~~v~~~i~~~~~~~~~l~~la~~~~~s~~~l~r~Fk~~~g~s~~~~~~~--~Rl~~A~~lL~~~~~si~~Ia 83 (129)
T d1xs9a_ 9 DAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS--RKMTEIAQKLKESNEPILYLA 83 (129)
T ss_dssp HHHTTTTTHHHHHTTSSSSCCCTTTGGGGSSCHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHHHHHCCHHHHHH
T ss_conf 368999999999860058999889998868999999999999856638899999--999999998873021589999
No 104
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=70.09 E-value=3 Score=18.75 Aligned_cols=17 Identities=18% Similarity=0.475 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+..++..+.+.|.+.
T Consensus 64 ~~vs~~i~~L~~~glv~ 80 (145)
T d2hr3a1 64 SNLAALLRELERGGLIV 80 (145)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 89999999998769867
No 105
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=69.93 E-value=1.8 Score=20.40 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 036579999985778778999834489
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
.+.|-.++|+.+|||++++.++-.++.
T Consensus 15 ~gltq~~lA~~~gvs~~ti~~~E~g~~ 41 (65)
T d2croa_ 15 LKMTQTELATKAGVKQQSIQLIEAGVT 41 (65)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 499999999997867949998787799
No 106
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=69.87 E-value=2 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 0365799999857787789998344
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
...|..+||+.+|++++++|.....
T Consensus 33 g~~t~~eia~~~~i~~~~v~~~l~~ 57 (109)
T d1sfxa_ 33 GGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8998999999857983559999999
No 107
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=68.74 E-value=3.4 Score=18.24 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH-HHH
Q ss_conf 3779999999999998728103657999998577877899983448-999
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK-SDI 51 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK-e~L 51 (227)
+.+|..|-..=.++..++| .|.+++|+.+|+|+.++.++-.+| ..+
T Consensus 6 ~~~k~~l~~~i~~~r~~~g---ltq~~lA~~~gis~~~is~ie~G~~~~~ 52 (89)
T d2o38a1 6 RQTKLRLAYALNAVIDRAR---LSQAAAAARLGINQPKVSALRNYKLEGF 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999999999959---9999999999733708999984997898
No 108
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=68.23 E-value=1.7 Score=20.56 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHH
Q ss_conf 036579999985778778999834489999999
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEI 55 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av 55 (227)
.|.|..++|+.+|+|.+++.+|=.++..+=...
T Consensus 24 ~gltq~~lA~~lgis~~~is~~E~g~~~~s~~~ 56 (87)
T d1lmb3_ 24 LGLSQESVADKMGMGQSGVGALFNGINALNAYN 56 (87)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHH
T ss_conf 399999999886722888999981147875999
No 109
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=68.21 E-value=0.79 Score=23.05 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHH
Q ss_conf 03657999998577877899983448999999
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYE 54 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~a 54 (227)
.+.|..++|+.+|||+++++++-.++...-..
T Consensus 15 ~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~ 46 (66)
T d2r1jl1 15 LKIRQAALGKMVGVSNVAISQWERSETEPNGE 46 (66)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 59999999999798999999998699899999
No 110
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=67.94 E-value=2 Score=19.95 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=20.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHHH
Q ss_conf 6579999985778778999834489999
Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227)
Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227)
-|+.++|+..|||+.||-||= |.+|+
T Consensus 3 ytI~e~A~~~gvs~~tlR~Ye--~~GLl 28 (109)
T d1r8da_ 3 YQVKQVAEISGVSIRTLHHYD--NIELL 28 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHH--HTTSS
T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC
T ss_conf 229999999896999999998--86895
No 111
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=67.69 E-value=2.2 Score=19.69 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 036579999985778778999834489
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
.+.|-.++|+.+|||.+++.+|=.++-
T Consensus 11 ~gltQ~elA~~lGvs~~tvs~~E~G~~ 37 (62)
T d2ppxa1 11 LKLTQEEFSARYHIPLGTLRDWEQGRS 37 (62)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 699999999996989999998877988
No 112
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=67.67 E-value=3.6 Score=18.09 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 9998728103657999998577877899983448
Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
.++.+. ...|..+||+..|+|..++.++...-
T Consensus 12 ~~L~~~--~r~s~~eiA~~l~ls~~~v~~Ri~rL 43 (63)
T d2cg4a1 12 EALMGN--ARTAYAELAKQFGVSPETIHVRVEKM 43 (63)
T ss_dssp HHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999983--89999999999893999999999999
No 113
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=67.65 E-value=3.6 Score=18.08 Aligned_cols=31 Identities=6% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 998728103657999998577877899983448
Q T0611 16 LFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 16 lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
.+.+. ...|..+||++.|+|..++++..+.-
T Consensus 11 ~L~~n--~r~s~~eiA~~l~ls~~~v~~Ri~~L 41 (60)
T d2cyya1 11 ILQND--GKAPLREISKITGLAESTIHERIRKL 41 (60)
T ss_dssp HHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99982--89999999999893999999999999
No 114
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=66.38 E-value=3.8 Score=17.91 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999987281036579999985778778999834
Q T0611 13 SLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 13 A~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
|.+-+.+.| .|..+||++.|.|+++++.+-.
T Consensus 11 a~~~L~e~g---~t~~~iA~~~Gks~~~V~~~Lr 41 (93)
T d1vz0a1 11 GYQALLEMG---LTQEEVARRVGKARSTVANALR 41 (93)
T ss_dssp HHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999849---9999999998514699999998
No 115
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=65.59 E-value=3.3 Score=18.41 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999998728103657999998577877899983
Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227)
..+|..|++ ++| +++..|+.+|||+.|||+--
T Consensus 23 r~~I~~aL~---~~g----n~~~aA~~Lgisr~tL~rKl 54 (61)
T d1g2ha_ 23 AQVLKLFYA---EYP----STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp HHHHHHHHH---HSC----SHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHH---HCC----CHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999---878----99999999798899999999
No 116
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=65.01 E-value=3.7 Score=17.97 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 18988999999999985410201
Q T0611 196 YLTPEYRERVLALREKYRPTLPE 218 (227)
Q Consensus 196 ~lt~~~~~~l~~l~~~~~~~l~~ 218 (227)
.+|++|++.++++.......+.+
T Consensus 94 ~LT~~G~~~~~~l~~~~~~~i~~ 116 (125)
T d1p4xa2 94 HMDDAQQDHAEQLLAQVNQLLAD 116 (125)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTSS
T ss_pred EECHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999999999999999999865
No 117
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=64.80 E-value=4.1 Score=17.70 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 778999999999999998778865444-4412688999999999999999999999999865988899388999999999
Q T0611 76 TLEDMTFYLESVFDGLWSYRFFHRDLE-YLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNV 154 (227)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~ 154 (227)
|++.++.++..+......++.+..... ++...+|.+ +..+..+-...+.+..++.++.++|.+.=......-..+.++
T Consensus 3 pl~alR~~lt~f~~hr~~~pElg~lay~EIi~~SsRL-e~IK~~~~~~~eqLr~iL~eg~eQgvfhF~Svn~tv~~I~~~ 81 (122)
T d2fx0a2 3 PINALREYLTVFTTHIKENPEIGTLAYEEIIKESARL-EKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSI 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTHHHHHHHTTTCCTTH-HHHGGGTHHHHHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHH
T ss_conf 6799999999999986338159999999999747157-653577732599999999987863826753114799998899
Q ss_pred HH
Q ss_conf 99
Q T0611 155 WL 156 (227)
Q Consensus 155 ~~ 156 (227)
.+
T Consensus 82 vL 83 (122)
T d2fx0a2 82 VL 83 (122)
T ss_dssp HH
T ss_pred HH
T ss_conf 84
No 118
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=64.53 E-value=2.3 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 036579999985778778999834
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
.|.|..+||+.+++|..|+-+|..
T Consensus 36 ~G~s~~eIA~~l~iS~~TV~~~~~ 59 (87)
T d1p4wa_ 36 EGFLVTEIAKKLNRSIKTISSQKK 59 (87)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 289999998786979999999999
No 119
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=64.11 E-value=3.9 Score=17.87 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998659888
Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227)
Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227)
...+...+..+.+.|.+.
T Consensus 63 ~~~vs~~l~~L~~~glv~ 80 (143)
T d1s3ja_ 63 PSAVTLMADRLEQKNLIA 80 (143)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHE
T ss_conf 889999999999734001
No 120
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.98 E-value=4.2 Score=17.59 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=27.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHHHHHH
Q ss_conf 6579999985778778999834489999999
Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDIIYEI 55 (227)
Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av 55 (227)
.+-.+||+..||++.||-.--++|+.++..-
T Consensus 26 ~sq~eIA~~fGv~~STvs~IlKnK~kil~~~ 56 (66)
T d1hlva1 26 LRKGEIARRFNIPPSTLSTILKNKRAILASE 56 (66)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1099999995997647999998799999889
No 121
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} SCOP: d1r71b_ d1r71d_ d1r71c_
Probab=63.93 E-value=4.2 Score=17.59 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9999987281036579999985778778999834
Q T0611 13 SLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 13 A~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
+++-+.+.|+ |..+||+..|.|++.+.++..
T Consensus 22 a~~rl~~~g~---t~~eiA~~lGks~s~Vs~~l~ 52 (114)
T d1r71a_ 22 FIGRELAKGK---KKGDIAKEIGKSPAFITQHVT 52 (114)
T ss_dssp HHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988416---888999998413899999998
No 122
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=63.90 E-value=4.2 Score=17.58 Aligned_cols=20 Identities=5% Similarity=0.265 Sum_probs=8.2
Q ss_pred CCCCHHHHHHHHCCCHHHHH
Q ss_conf 03657999998577877899
Q T0611 23 RNITTNHIAAHLAISPGNLY 42 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY 42 (227)
..+|..+|++++|++++++.
T Consensus 44 ~~it~~ela~~~~~~~~~vs 63 (135)
T d3broa1 44 KEVLQRDLESEFSIKSSTAT 63 (135)
T ss_dssp SCCBHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999999896886899
No 123
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=63.31 E-value=1.6 Score=20.71 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
Q ss_conf 03657999998577877899983448999999999
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQ 57 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~ 57 (227)
.+.|-.++|+.+|||+.+|..+-.+|..+=..++.
T Consensus 13 ~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~ 47 (87)
T d2icta1 13 LNVSLREFARAMEIAPSTASRLLTGKAALTPEMAI 47 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHH
T ss_conf 69999999999724699999999850179899999
No 124
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=63.09 E-value=2.6 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCHHHHH
Q ss_conf 6579999985778778999834489999
Q T0611 25 ITTNHIAAHLAISPGNLYYHFRNKSDII 52 (227)
Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F~sKe~Ll 52 (227)
-|+.++|+..|||+.||-||= |.+|+
T Consensus 4 ytI~evA~~~gvs~~tlR~Ye--~~GLl 29 (118)
T d1r8ea1 4 YSIGEVSKLANVSIKALRYYD--KIDLF 29 (118)
T ss_dssp EEHHHHHHHHTCCHHHHHHHH--HTTSS
T ss_pred CCHHHHHHHHCCCHHHHHHHH--HCCCC
T ss_conf 019999999896999999999--85885
No 125
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=63.04 E-value=4.4 Score=17.47 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999999999872810--------36579999985778778999834
Q T0611 5 TRDKILLSSLELFNDKGER--------NITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~--------~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
=|+||...=+.+..+.|-. ..|-.+||.-+|+|+-++.+.++
T Consensus 2 v~~Rla~~Ll~l~~~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~ 51 (81)
T d2gaua1 2 VRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLS 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 88999999999999839988997786068999999997998999999999
No 126
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=62.69 E-value=4.4 Score=17.43 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999872810365799999857787789998
Q T0611 9 ILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYH 44 (227)
Q Consensus 9 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~ 44 (227)
+---.++.+.++|...+|-.+||+.+|++...+-.=
T Consensus 10 ~Ylr~L~~l~~~g~~~vSS~~La~~~gi~~~qVRKD 45 (74)
T d2dt5a1 10 TYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKD 45 (74)
T ss_dssp HHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHH
T ss_conf 999999999987991596999999979699999987
No 127
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=62.06 E-value=4.5 Score=17.35 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHH
Q ss_conf 999999998728103657999998577-87789998344899
Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAI-SPGNLYYHFRNKSD 50 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGv-s~gtlY~~F~sKe~ 50 (227)
|+.|.+++.+. ..|+.+||.+.|. +...++..|+..-+
T Consensus 3 l~~a~~lL~~t---~~~i~~IA~~~Gf~~~~~F~r~Fk~~~g 41 (62)
T d1bl0a2 3 MTEIAQKLKES---NEPILYLAERYGFESQQTLTRTFKNYFD 41 (62)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHTTCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCC---CCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 99999998836---9999999999879988999999998889
No 128
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=61.77 E-value=3.1 Score=18.59 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=18.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 657999998577877899983
Q T0611 25 ITTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 25 ~t~~~IA~~aGvs~gtlY~~F 45 (227)
.++.++|+..|||..||-||=
T Consensus 1 m~Ige~A~~~gvs~~TlR~Ye 21 (127)
T d1q06a_ 1 MNISDVAKITGLTSKAIRFYE 21 (127)
T ss_dssp CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHH
T ss_conf 978999999892999999999
No 129
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.73 E-value=4.6 Score=17.31 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999865988899
Q T0611 124 AAINRIFAKLADAGIIQPQ 142 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~~~ 142 (227)
+....+++.+.+.|...+-
T Consensus 23 ~~A~~i~~~~~~~~~~~Gr 41 (109)
T d1vola2 23 MAATHIARKAVELDLVPGR 41 (109)
T ss_dssp HHHHHHHHHHHHTTCSTTC
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999874985799
No 130
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1omqa_ d2hi3a1
Probab=61.66 E-value=4.2 Score=17.59 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 99999999872810365-7999998577877899983448999
Q T0611 10 LLSSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
+++-...|.+..|-... ..+||..+|++...|-.+|.|+..-
T Consensus 39 l~~Le~~F~~n~yP~~~~r~~LA~~lgl~~~~V~vWFQNrR~k 81 (88)
T d1b72a_ 39 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 81 (88)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHH
T ss_conf 9999999970699998889999986348812133223474788
No 131
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.50 E-value=4.6 Score=17.28 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 9999999987281-0365799999857787789998344899
Q T0611 10 LLSSLELFNDKGE-RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 10 l~aA~~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
++.--..|.+..| ..-...+||..+|++...|--+|.||..
T Consensus 12 l~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 53 (58)
T d1ig7a_ 12 LLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 53 (58)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHH
T ss_conf 999999999878888999999999929994061000712676
No 132
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.43 E-value=3.9 Score=17.81 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCC-CCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999999999872810-365799999857787789998344899
Q T0611 9 ILLSSLELFNDKGER-NITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 9 Il~aA~~lf~e~G~~-~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
||+. .|.+..|- ......||..+|++...|-.+|.|+..
T Consensus 11 ~Le~---~F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~ 50 (53)
T d1le8a_ 11 FLEQ---VFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 50 (53)
T ss_dssp HHHH---HHHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999---998389989999999999978998888998883442
No 133
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=60.86 E-value=4.4 Score=17.47 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+..++.++.+.|.+.
T Consensus 70 ~tvs~~i~rL~~~gli~ 86 (162)
T d2fxaa1 70 STAFNFSKKLEERGYLR 86 (162)
T ss_dssp HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHCCCCE
T ss_conf 03199899999777723
No 134
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=60.72 E-value=4.8 Score=17.18 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=19.9
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 987281036579999985778778999834
Q T0611 17 FNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 17 f~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
+.+.|.. +..-|+.+|||+.|||+.-+
T Consensus 29 L~~~~gn---~~~aA~~LGIsR~TL~rkmk 55 (60)
T d1umqa_ 29 YEMCDRN---VSETARRLNMHRRTLQRILA 55 (60)
T ss_dssp HHHTTSC---HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHCCC---HHHHHHHHCCCHHHHHHHHH
T ss_conf 9996685---99999998988999999999
No 135
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=59.96 E-value=1.7 Score=20.48 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 99999999998728103657999998577877899983448
Q T0611 8 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 8 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
.||+..++-|.++|..-. +|.+.+..|++.+.||.-|++.
T Consensus 54 ~iI~~lR~~y~e~~~~P~-~R~l~k~~~~~~~~L~~LFP~g 93 (111)
T d1ji8a_ 54 KLVKYLREYWETFGTCPP-IKMVTKETGFSLEKIYQLFPSG 93 (111)
T ss_dssp HHHHHHHHHTTTTSCCCC-STTGGGGSCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCCCC-HHHHHHHHCCCHHHHHHHCCCC
T ss_conf 999999999987089983-6799998365766888552887
No 136
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=59.72 E-value=4 Score=17.76 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 036579999985778778999834
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
.++|+.+||+.+|+|++++.++-+
T Consensus 20 ~~lt~~eLa~~l~i~~~~vs~~l~ 43 (85)
T d3ctaa1 20 AYLTSSKLADMLGISQQSASRIII 43 (85)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 998899999998878878999999
No 137
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=59.37 E-value=5 Score=17.02 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999865988899
Q T0611 124 AAINRIFAKLADAGIIQPQ 142 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~~~ 142 (227)
+....+++...+.+.+.+-
T Consensus 22 ~~A~~i~~~~~~~~~~~Gr 40 (95)
T d1aisb2 22 RRAIEILDEAYKRGLTSGK 40 (95)
T ss_dssp HHHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999884885799
No 138
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=59.28 E-value=1.8 Score=20.34 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 99999999998728103657999998577877899983448
Q T0611 8 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 8 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
.||+..++-|.++|..- ++|.+.+..|++.+.||.-|++.
T Consensus 54 ~vI~~lR~~y~~~~~~P-~~R~l~k~~~~~~~~L~~LFp~g 93 (111)
T d1ji8a_ 54 KLVKYLREYWETFGTCP-PIKMVTKETGFSLEKIYQLFPSG 93 (111)
T ss_dssp HHHHHHHHHTTTTSCCC-CSTTGGGGSCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 99999999999978997-08999998286889999985998
No 139
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=58.99 E-value=4.9 Score=17.08 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999865988
Q T0611 125 AINRIFAKLADAGII 139 (227)
Q Consensus 125 ~~~~~l~~~i~~G~l 139 (227)
.+...+..+.+.|.+
T Consensus 60 ~vs~~i~~L~~~gli 74 (136)
T d2fbia1 60 SMTGVLARLERDGIV 74 (136)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCCE
T ss_conf 899999999988997
No 140
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.43 E-value=4.5 Score=17.34 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHCCHH
Q ss_conf 99999999987281036579-999985778778999834489
Q T0611 9 ILLSSLELFNDKGERNITTN-HIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 9 Il~aA~~lf~e~G~~~~t~~-~IA~~aGvs~gtlY~~F~sKe 49 (227)
-++.-...|.+..|-+...+ +||..+|++...|-..|.|+.
T Consensus 19 q~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR 60 (67)
T d1ocpa_ 19 VRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60 (67)
T ss_dssp HHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999872579999999999998478899999858788
No 141
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=58.04 E-value=5.3 Score=16.87 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999998728103657999998577877899983
Q T0611 7 DKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 7 ~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227)
+.+.+.-...|.+.||.--++++||+..|++...+-.++
T Consensus 6 ~~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL 44 (64)
T d1lvaa3 6 KKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELL 44 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999869999959999989199999999999
No 142
>d1jt6b2 a.121.1.1 (B:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} SCOP: d1jt0a2 d1jt0d2
Probab=57.49 E-value=5.4 Score=16.80 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=41.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4441268899999999999999999999999986598889938899999999999999988776553
Q T0611 102 EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTA 168 (227)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~~~~w~~~~~~~ 168 (227)
+.-...++++-.++..+.......++.+|.+|++.|.+..+..+-. ..+..+|+.+....
T Consensus 31 ~~s~~~S~ev~~kl~~L~~~~~d~~~~Ii~EG~qsgef~i~nv~~~-------~~il~~~l~GL~~l 90 (115)
T d1jt6b2 31 YTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAV-------SKIAANAVNGIVTF 90 (115)
T ss_dssp HHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSCHHHH-------HHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-------HHHHHHHHHHHHHH
T ss_conf 7055668889999984333489999999984576786010323789-------99999999887652
No 143
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=57.34 E-value=5.3 Score=16.85 Aligned_cols=16 Identities=13% Similarity=0.557 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 9999999998659888
Q T0611 125 AINRIFAKLADAGIIQ 140 (227)
Q Consensus 125 ~~~~~l~~~i~~G~l~ 140 (227)
.+...+..+++.|.+.
T Consensus 63 ~vsr~i~~L~~~glv~ 78 (137)
T d1z91a1 63 TLTPMLKRMEQQGLIT 78 (137)
T ss_dssp HHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHCCCEE
T ss_conf 8979999996500547
No 144
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=57.17 E-value=3.9 Score=17.86 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHCC-C--CCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 73779999999999998728-1--0365799999857787789998344
Q T0611 2 TMKTRDKILLSSLELFNDKG-E--RNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 2 ~~~TR~~Il~aA~~lf~e~G-~--~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
+++-++||..--+.+....+ - =..|.++||.-+|+|+-++.+.++.
T Consensus 2 T~dv~~Rla~~Ll~~~~~~~~~~~i~lt~~elA~~lg~sr~tvsr~l~~ 50 (73)
T d1zyba1 2 TLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNE 50 (73)
T ss_dssp CCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8889999999999845650898675069999998979889999999999
No 145
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=56.34 E-value=4.5 Score=17.40 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 3657999998577877899983448
Q T0611 24 NITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
+.|+.++|+.+|||++++-.+=.+|
T Consensus 25 ~~t~~eLA~~~Gvs~~~ls~iE~G~ 49 (82)
T d2ofya1 25 DMSMVTVAFDAGISVETLRKIETGR 49 (82)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 0799999989717999999998298
No 146
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=55.42 E-value=5.8 Score=16.56 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=26.2
Q ss_pred HHHHHCC-----CCCCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 9998728-----1036579999985778778999834489
Q T0611 15 ELFNDKG-----ERNITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 15 ~lf~e~G-----~~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
..|.+.+ -....+.+||+++|+++..|-.+|.|+.
T Consensus 34 ~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R 73 (80)
T d1wh7a_ 34 AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNK 73 (80)
T ss_dssp HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTS
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCC
T ss_conf 9999840225696999999999997889889510030376
No 147
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.35 E-value=3.5 Score=18.21 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 036579999985778778999834489999999999
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQE 58 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe~Ll~av~~~ 58 (227)
.+.|..++|+.+|||.+++.++=.++...=...+..
T Consensus 18 ~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~ 53 (78)
T d1x57a1 18 KGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGK 53 (78)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 599726788718878999999980677999999999
No 148
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=54.80 E-value=5.9 Score=16.49 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+...+..+.+.|.+.
T Consensus 61 ~~vs~~v~~L~~~gli~ 77 (140)
T d2etha1 61 SNVTNVVDSLEKRGLVV 77 (140)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 79999999998788966
No 149
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=53.70 E-value=6.1 Score=16.37 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+...+..+.+.|.+.
T Consensus 63 ~~vs~~v~~L~~~glv~ 79 (138)
T d1jgsa_ 63 GALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 57999999873078779
No 150
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.53 E-value=5.2 Score=16.93 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=29.2
Q ss_pred HHHHHH-CCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999987-281-0365799999857787789998344899
Q T0611 14 LELFND-KGE-RNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 14 ~~lf~e-~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
-+.|.. ..| ....+.+||+.+|+|...|...|.++..
T Consensus 17 E~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~ 55 (59)
T d2cqxa1 17 EKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 55 (59)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 999988489959999999999978199999999996161
No 151
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=53.22 E-value=5.4 Score=16.77 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 28103657999998577877899983448
Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
---.|+|+.+|+.++|+|.+|+-+-+...
T Consensus 18 L~krG~sLa~lsr~~gls~stl~naL~rp 46 (74)
T d1nera_ 18 LKKRKLSLSALSRQFGYAPTTLANALERH 46 (74)
T ss_dssp HTTSSCCHHHHHHHHSCCHHHHHHTTTSS
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 99968879999999099878999998377
No 152
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.67 E-value=6.3 Score=16.26 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=32.0
Q ss_pred HHHHHHHHH-CCC-CCCCHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 999999987-281-03657999998577877899983448999
Q T0611 11 LSSLELFND-KGE-RNITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 11 ~aA~~lf~e-~G~-~~~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
+.--..|.. ..| .......||..+|++...|--.|.|+..=
T Consensus 14 ~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak 56 (72)
T d1uhsa_ 14 EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72)
T ss_dssp HHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999874233899999999999399789999989999999
No 153
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=52.36 E-value=6.4 Score=16.22 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 99999999872810365-79999985778778999834489
Q T0611 10 LLSSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
++.--..|....|-+.. ...||.+.|++...|..+|.|+.
T Consensus 15 ~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR 55 (66)
T d1bw5a_ 15 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55 (66)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999987899999999999990939788225307688
No 154
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]}
Probab=51.95 E-value=1.9 Score=20.10 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.4
Q ss_pred HHHHHCCCHHHHHHHHCC
Q ss_conf 999857787789998344
Q T0611 30 IAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 30 IA~~aGvs~gtlY~~F~s 47 (227)
=+=++||+-|+|||-|-+
T Consensus 7 A~FEaGIklGaLyHQF~G 24 (113)
T d2ieca1 7 AIFEAGITLGAIYHQFCG 24 (113)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCHHEEECC
T ss_conf 776420113002202027
No 155
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=51.24 E-value=6.6 Score=16.10 Aligned_cols=34 Identities=3% Similarity=0.057 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999999999999999999998659888993889
Q T0611 113 QDYREFTNRCLAAINRIFAKLADAGIIQPQPEDL 146 (227)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~ 146 (227)
..+.....+....+..++++++++|.+++|....
T Consensus 36 ~~~~~~r~~l~~~~~~ll~rA~~aG~iR~Dv~~~ 69 (110)
T d2o7ta2 36 DEVSALRRTTEKNTTTLINLAKQHGLVHHDIAPG 69 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 8999999999999999999999819988999999
No 156
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=50.58 E-value=6.8 Score=16.03 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+...+..+.+.|.+.
T Consensus 58 ~tvs~~l~~L~~~glI~ 74 (144)
T d1lj9a_ 58 TTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 16999999999603201
No 157
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=50.43 E-value=5.7 Score=16.61 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=21.3
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 987281036579999985778778999
Q T0611 17 FNDKGERNITTNHIAAHLAISPGNLYY 43 (227)
Q Consensus 17 f~e~G~~~~t~~~IA~~aGvs~gtlY~ 43 (227)
|.=.|....|+.+||+..|||+..+-.
T Consensus 21 yGl~~~~~~tl~eIa~~lgiS~erVrq 47 (61)
T d1ku3a_ 21 KGLIDGREHTLEEVGAYFGVTRERIRQ 47 (61)
T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHHHH
T ss_pred HCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 477899977899988997988999999
No 158
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.19 E-value=6.9 Score=15.98 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 9999999998728103-657999998577877899983448999
Q T0611 9 ILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 9 Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
||++ .|...-|-. ..+..||...|++...|-.+|.++..-
T Consensus 17 ~Le~---~F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k 57 (76)
T d2ecca1 17 ILKS---FFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76)
T ss_dssp HHHH---HHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999---9998678999999999999805799999999999999
No 159
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=48.10 E-value=7.4 Score=15.76 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999999998659888993
Q T0611 124 AAINRIFAKLADAGIIQPQP 143 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~~~~ 143 (227)
+....+++.+.+.+..++..
T Consensus 24 ~~A~~i~k~~~~~~~~~g~~ 43 (98)
T d1aisb1 24 EEAARLYREAVRKGLIRGRS 43 (98)
T ss_dssp HHHHHHHHHHHTTTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999998751143898
No 160
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=48.01 E-value=7.4 Score=15.75 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHH
Q ss_conf 999999998728103657999998577-877899983448999
Q T0611 10 LLSSLELFNDKGERNITTNHIAAHLAI-SPGNLYYHFRNKSDI 51 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t~~~IA~~aGv-s~gtlY~~F~sKe~L 51 (227)
|+.|..++.. .+.++.+||..+|. |...+++.|+..-++
T Consensus 3 l~~A~~lL~~---t~~~i~~IA~~~Gf~~~~~F~r~Fk~~~G~ 42 (65)
T d1d5ya2 3 LSKSAVALRL---TARPILDIALQYRFDSQQTFTRAFKKQFAQ 42 (65)
T ss_dssp HHHHHHHHHH---CCCCHHHHHHHTTCSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 9999999886---899999999997899879999999988890
No 161
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.97 E-value=7.4 Score=15.74 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHHHHC-C-CCCCCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999872-8-10365799999857787789998344899
Q T0611 15 ELFNDK-G-ERNITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 15 ~lf~e~-G-~~~~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
..|.+. . -.......||..+|+|...|-..|.+|..
T Consensus 10 ~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~ 47 (52)
T d1x2ma1 10 KVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN 47 (52)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99978689939999999999979699998998786044
No 162
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=47.84 E-value=7.4 Score=15.73 Aligned_cols=19 Identities=11% Similarity=0.280 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 1898899999999998541
Q T0611 196 YLTPEYRERVLALREKYRP 214 (227)
Q Consensus 196 ~lt~~~~~~l~~l~~~~~~ 214 (227)
.+||+|++.++.+......
T Consensus 94 ~LT~~G~~~~~~~~~~~~~ 112 (115)
T d2frha1 94 LVNAQQRKKIESLLSRVNK 112 (115)
T ss_dssp ECCSHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHH
T ss_conf 9898899999999999985
No 163
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=47.51 E-value=3.8 Score=17.90 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=19.5
Q ss_pred HCCCCCCCHHHH-HHHHCCCHHHHHHHHCC
Q ss_conf 728103657999-99857787789998344
Q T0611 19 DKGERNITTNHI-AAHLAISPGNLYYHFRN 47 (227)
Q Consensus 19 e~G~~~~t~~~I-A~~aGvs~gtlY~~F~s 47 (227)
++=| ++|=++- +=++||+-|+|||.|-+
T Consensus 6 ~kYF-n~TdrerA~FEaGIklGaLyHQFvG 34 (120)
T d2i52a1 6 EKYF-NCTDIQRAFFEAGIKLGAIFHQYTG 34 (120)
T ss_dssp GGGC-CSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHC-CCCCHHHHHHHHHHHHCCHHEEECC
T ss_conf 8663-7884888887630113002103216
No 164
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.43 E-value=7.5 Score=15.69 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 99999998728103-65799999857787789998344899
Q T0611 11 LSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 11 ~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
.+--..|....|-. .....||..+|++...|-..|.++..
T Consensus 11 ~~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~ 51 (57)
T d1e3oc1 11 VALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQ 51 (57)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999998657899999999999978799999999999988
No 165
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=47.25 E-value=7 Score=15.95 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.5
Q ss_pred CHHHHHHHHCCCHHHHHHH
Q ss_conf 5799999857787789998
Q T0611 26 TTNHIAAHLAISPGNLYYH 44 (227)
Q Consensus 26 t~~~IA~~aGvs~gtlY~~ 44 (227)
|...+|+.+|||+.++|..
T Consensus 12 ~~~k~A~algis~~AVsqW 30 (61)
T d1rzsa_ 12 TQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHH
T ss_conf 7999999969989999988
No 166
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=46.47 E-value=7.8 Score=15.58 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 189889999999999854102
Q T0611 196 YLTPEYRERVLALREKYRPTL 216 (227)
Q Consensus 196 ~lt~~~~~~l~~l~~~~~~~l 216 (227)
.+|++|++.++++...+....
T Consensus 93 ~LT~~G~~~~~~~~~~~~~~i 113 (115)
T d1hsja1 93 YVTDTQKANIQKLISELEEYI 113 (115)
T ss_dssp ECCSSHHHHHHHHHHHHGGGS
T ss_pred EECHHHHHHHHHHHHHHHHHH
T ss_conf 999899999999999999983
No 167
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=45.79 E-value=5.3 Score=16.85 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC----CHHHHHHH
Q ss_conf 779999999999998728103657999998577----87789998
Q T0611 4 KTRDKILLSSLELFNDKGERNITTNHIAAHLAI----SPGNLYYH 44 (227)
Q Consensus 4 ~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGv----s~gtlY~~ 44 (227)
-|||+|++.- .+. ..|..+|++.+|+ +...+|.|
T Consensus 11 T~RerIi~lL----~~~---~~ta~eia~~l~i~~~~~~k~vyeh 48 (105)
T d2gmga1 11 TRREKIIELL----LEG---DYSPSELARILDMRGKGSKKVILED 48 (105)
T ss_dssp HHHHHHHHHT----TTS---CBCTTHHHHSSCCCSSCCHHHHHHH
T ss_pred CHHHHHHHHH----HCC---CCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 2999999999----829---9999999999653554418899999
No 168
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=45.45 E-value=8.1 Score=15.47 Aligned_cols=58 Identities=9% Similarity=-0.043 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877899999999999999877-----8865444441268899999999999999999999999
Q T0611 75 ITLEDMTFYLESVFDGLWSYR-----FFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAK 132 (227)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 132 (227)
+|.+.+..++..+...+.... .+.....++...++.++....+.++.+...+...+..
T Consensus 2 dP~e~l~~~~~~~~~~~~~~~~~~GC~~~~~a~E~~~~~e~ir~~~~~~~~~~~~~l~~~l~~ 64 (111)
T d1sgma2 2 DPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLME 64 (111)
T ss_dssp SHHHHHHHHHHHHHHTTSSGGGCCCCTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999870679999981989997763288899999999999999999999987
No 169
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=44.70 E-value=8.2 Score=15.40 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 28103657999998577877899
Q T0611 20 KGERNITTNHIAAHLAISPGNLY 42 (227)
Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY 42 (227)
.|....|+.+||+..|||+..+-
T Consensus 21 ~~~~~~tl~eI~~~lgiSrerVr 43 (68)
T d2p7vb1 21 DMNTDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp TSSSCCCHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99986889999999797899999
No 170
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=44.41 E-value=8.3 Score=15.36 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHCCCC---------CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999999999999872810---------36579999985778778999834
Q T0611 6 RDKILLSSLELFNDKGER---------NITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~---------~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
++||...=+.+-.+.|-. ..|..+||.-+|+|+-++.+-++
T Consensus 3 ~~Rla~~Ll~l~~~~g~~~~~~~~i~~~~t~~eiA~~lG~sretvsr~l~ 52 (80)
T d1ft9a1 3 KQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALN 52 (80)
T ss_dssp HHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 89999999999998599889971785378999999997988999999999
No 171
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=44.35 E-value=8.4 Score=15.35 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 28103657999998577877899983448
Q T0611 20 KGERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 20 ~G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
.|..=.|+.+-|+.+|||.+||.+.-+|.
T Consensus 60 dG~~Y~S~~EAAr~LgIs~~TI~~RiKS~ 88 (96)
T d1i3ja_ 60 DGVIFDCAADAARHFKISSGLVTYRVKSD 88 (96)
T ss_dssp TTEEESSHHHHHHHHTCCHHHHHHHHHCT
T ss_pred CCEEECCHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 57571467899987089867855432178
No 172
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]} SCOP: d2ieca1 d2iecb1
Probab=43.71 E-value=4.7 Score=17.20 Aligned_cols=36 Identities=25% Similarity=0.145 Sum_probs=23.2
Q ss_pred HCCCCCCCHHHHH-HHHCCCHHHHHHHHC-------CHHHHHHHH
Q ss_conf 7281036579999-985778778999834-------489999999
Q T0611 19 DKGERNITTNHIA-AHLAISPGNLYYHFR-------NKSDIIYEI 55 (227)
Q Consensus 19 e~G~~~~t~~~IA-~~aGvs~gtlY~~F~-------sKe~Ll~av 55 (227)
++=| +.|=++-| =++||+-|+|||.|- |++.|=.|+
T Consensus 6 ~~YF-n~TdrerA~FEaGIklGALyHQFvGtPVs~~sa~slE~AI 49 (120)
T d2i52a1 6 EKYF-NCTDIQRAFFEAGIKLGAIFHQYTGIPVNSENASMAEEFI 49 (120)
T ss_dssp GGGC-CSCHHHHHHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHH
T ss_pred HHCC-CCCCHHHHHHHCCCHHCEEEEEEEEECCCHHHHHHHHHHH
T ss_conf 0102-6885677653422101203533364122852389999999
No 173
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=43.53 E-value=8.6 Score=15.27 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 1898899999999998541020147
Q T0611 196 YLTPEYRERVLALREKYRPTLPEAQ 220 (227)
Q Consensus 196 ~lt~~~~~~l~~l~~~~~~~l~~~~ 220 (227)
.+|++|++.+..+...+...+..-.
T Consensus 95 ~lT~~G~~~~~~~~~~~~~~i~~~~ 119 (125)
T d1p4xa1 95 SISEEQREKIAERVTLFDQIIKQFN 119 (125)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8899999999999999999999776
No 174
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.24 E-value=7.9 Score=15.52 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 79999999999998728103-65799999857787789998344899
Q T0611 5 TRDKILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
|.++ +..--..|....|-. .....||..+|++...|-.+|.|+..
T Consensus 12 T~~Q-~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 57 (76)
T d2ecba1 12 TAEQ-LRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 57 (76)
T ss_dssp CHHH-HHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999-999999999877888999999999968989999994898999
No 175
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.12 E-value=8.7 Score=15.22 Aligned_cols=31 Identities=6% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999987281036579999985778778999834
Q T0611 14 LELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 14 ~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
++++.++ ..+|-.+||+..|+|++|+..+-.
T Consensus 11 l~~i~~~--g~~sr~eLa~~~gLS~~Tvs~iv~ 41 (70)
T d1z6ra1 11 YRLIDQL--GPVSRIDLSRLAQLAPASITKIVH 41 (70)
T ss_dssp HHHHHSS--CSCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999994--992899999998949999999999
No 176
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=43.10 E-value=8.5 Score=15.31 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 10365799999857787789998
Q T0611 22 ERNITTNHIAAHLAISPGNLYYH 44 (227)
Q Consensus 22 ~~~~t~~~IA~~aGvs~gtlY~~ 44 (227)
=+++|..+||++.|++|..+-++
T Consensus 22 ~~~~tA~~LAk~Lg~~Kk~VNr~ 44 (70)
T d1sfua_ 22 NDYTTAISLSNRLKINKKKINQQ 44 (70)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 77704999999959889898899
No 177
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=41.78 E-value=9.1 Score=15.08 Aligned_cols=17 Identities=6% Similarity=0.462 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998659888
Q T0611 124 AAINRIFAKLADAGIIQ 140 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~ 140 (227)
..+..++..+++.|.+.
T Consensus 63 ~~~s~~l~~L~~~Gli~ 79 (136)
T d2bv6a1 63 GTVSPLLKRMEQVDLIK 79 (136)
T ss_dssp TTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 37999999999789879
No 178
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=41.45 E-value=9.2 Score=15.04 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 99999999998728103-65799999857787789998344899
Q T0611 8 KILLSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 8 ~Il~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
.-+++--..|.+..|-. .....||..+|+|...|-..|.|+..
T Consensus 12 ~Q~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~ 55 (65)
T d1fjla_ 12 SQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRA 55 (65)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999869998389999999959987895686164789
No 179
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.83 E-value=10 Score=14.76 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 99999999987281036-5799999857787789998344899
Q T0611 9 ILLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 9 Il~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
.+++--..|....|-+. ....||..+|++...|...|.|+..
T Consensus 10 q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~ 52 (58)
T d1au7a1 10 AKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 52 (58)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999998836999999999999968999999999799848
No 180
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.48 E-value=10 Score=14.72 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=25.9
Q ss_pred HHHHHH-CCCCCCC-HHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999987-2810365-799999857787789998344899
Q T0611 14 LELFND-KGERNIT-TNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 14 ~~lf~e-~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
-..|.+ .-|-... ...||..+|++...|-..|.|+..
T Consensus 23 e~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~ 61 (71)
T d1wi3a_ 23 QSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999998067798999999987827999999998185576
No 181
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=38.43 E-value=10 Score=14.72 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 9999999987281036-57999998577877899983448999
Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
+.+--..|.+..|-.. ...+||..+|++...|--.|.|+..=
T Consensus 13 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k 55 (67)
T d1zq3p1 13 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 55 (67)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHH
T ss_conf 9999999998778778999999987099813310566307776
No 182
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.78 E-value=10 Score=14.65 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998659888
Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227)
Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227)
...+...+..+++.|.+.
T Consensus 64 ~~~vsr~l~~L~~~G~v~ 81 (141)
T d1lnwa_ 64 KALITRKIRELEGRNLVR 81 (141)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHCEE
T ss_conf 737999999999832301
No 183
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.09 E-value=5 Score=17.03 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 99987281-03657999998577877899983448
Q T0611 15 ELFNDKGE-RNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 15 ~lf~e~G~-~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
+.|....| .......||..+|++...|-..|.||
T Consensus 15 ~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFqNr 49 (50)
T d1s7ea1 15 AIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 49 (50)
T ss_dssp HHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 99998799999999999999790988922107808
No 184
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.65 E-value=11 Score=14.41 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 999999999999872810--------365799999857787789998344
Q T0611 6 RDKILLSSLELFNDKGER--------NITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~--------~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
.+||...-+.+..+.|-. ..|-++||.-+|+|+.++-+.++.
T Consensus 3 ~~Rla~~Ll~l~~~~g~~~~~~~i~l~lt~~~lA~~~G~sRetvsr~L~~ 52 (69)
T d1i5za1 3 TGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKM 52 (69)
T ss_dssp HHHHHHHHHHGGGSTTCCCCSSSCEEECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999998099888974561789999998979979999999999
No 185
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.57 E-value=11 Score=14.40 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999999987281036-5799999857787789998344899
Q T0611 11 LSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 11 ~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
+.--.+|....|-+. ...+||..+|+|...|-..|.||..
T Consensus 12 ~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~ 52 (57)
T d1jgga_ 12 GRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 52 (57)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHH
T ss_conf 99999998779999999999999959986680100413565
No 186
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=35.40 E-value=11 Score=14.38 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=13.1
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 57999998577877899983
Q T0611 26 TTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 26 t~~~IA~~aGvs~gtlY~~F 45 (227)
|.+++|+..|||+.|+-.-+
T Consensus 24 se~~La~~~~vSr~tvr~Al 43 (78)
T d3bwga1 24 VLETLMAQFEVSKSTITKSL 43 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999887989999999
No 187
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.27 E-value=11 Score=14.37 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=6.5
Q ss_pred CHHHHHHHHCCCHHHH
Q ss_conf 5799999857787789
Q T0611 26 TTNHIAAHLAISPGNL 41 (227)
Q Consensus 26 t~~~IA~~aGvs~gtl 41 (227)
|.+++|+..|||+.|+
T Consensus 29 s~~eLa~~~~vSr~tv 44 (74)
T d1hw1a1 29 AERELSELIGVTRTTL 44 (74)
T ss_dssp CHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCCCHHHH
T ss_conf 4999999989798999
No 188
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=35.00 E-value=11 Score=14.34 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 9999999987281036-579999985778778999834489
Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
+..--..|....|-+. ...+||..+|++...|--.|.|+.
T Consensus 11 ~~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrR 51 (53)
T d1p7ia_ 11 LARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 51 (53)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 99999999887889889999999995978688022041367
No 189
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.69 E-value=12 Score=14.30 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH
Q ss_conf 9999999999998728103657999998577877
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPG 39 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~g 39 (227)
+++|++..+....+- |..+++..||+..|++..
T Consensus 13 ~~~i~Ehni~~is~~-Y~~Isl~~la~~l~l~~~ 45 (84)
T d1ufma_ 13 DRAVIEHNLLSASKL-YNNITFEELGALLEIPAA 45 (84)
T ss_dssp CHHHHHHHHHHHHHS-CSEEEHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHH-HCEEEHHHHHHHHCCCHH
T ss_conf 999999989999883-025669999999787999
No 190
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=34.36 E-value=12 Score=14.27 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=23.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 99987281036579999985778778999834
Q T0611 15 ELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 15 ~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
++..+ | ..|-.+||+..|+|+.|+.++..
T Consensus 6 ~~i~~-~--pisr~eLa~~~gls~~TVs~~v~ 34 (62)
T d2hoea1 6 KRIMK-S--PVSRVELAEELGLTKTTVGEIAK 34 (62)
T ss_dssp HHHHH-S--CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH-C--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99997-8--96999999998939999999999
No 191
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.33 E-value=12 Score=14.15 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 9999999987281036-5799999857787789998344899
Q T0611 10 LLSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
+++-...|.+..|-+. ....||..+|+|...|-..|.|+..
T Consensus 13 ~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 54 (60)
T d1yz8p1 13 LQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 54 (60)
T ss_dssp HHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999769998679999999877985788998598888
No 192
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.25 E-value=13 Score=14.03 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999999998659888993
Q T0611 124 AAINRIFAKLADAGIIQPQP 143 (227)
Q Consensus 124 ~~~~~~l~~~i~~G~l~~~~ 143 (227)
+....+++...+.|..++..
T Consensus 24 ~~A~~i~~~~~~~~~~~Gr~ 43 (95)
T d1vola1 24 DRTNNLFRQAYEQKSLKGRA 43 (95)
T ss_dssp HHHHHHHHHHHHTCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999997751034897
No 193
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.34 E-value=13 Score=13.92 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHCCCC-CCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 999999999872810-36579999985778778999834489
Q T0611 9 ILLSSLELFNDKGER-NITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 9 Il~aA~~lf~e~G~~-~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
||+..+......+|- .--...||...|++...|...|.++.
T Consensus 12 ~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R 53 (60)
T d1k61a_ 12 ILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60)
T ss_dssp HHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 999999975898994999999999998809999769757643
No 194
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=30.94 E-value=13 Score=13.87 Aligned_cols=25 Identities=4% Similarity=0.133 Sum_probs=18.1
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHH
Q ss_conf 9872810365799999857787789
Q T0611 17 FNDKGERNITTNHIAAHLAISPGNL 41 (227)
Q Consensus 17 f~e~G~~~~t~~~IA~~aGvs~gtl 41 (227)
|.=.|....|+++||+..|||+--+
T Consensus 31 fGl~~~~~~tl~eI~~~lgiSrERV 55 (87)
T d1ttya_ 31 YGLLDGKPKTLEEVGQYFNVTRERI 55 (87)
T ss_dssp HTTTTSSCCCHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHH
T ss_conf 2778999688999999959889999
No 195
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=30.87 E-value=13 Score=13.87 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 37799999999999987281036579999985778778999834
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
|+||-.+-=-++-.++.++=..+|.++||++.|+|+..+..-..
T Consensus 2 ~s~~~~~Av~~L~~la~~~~~~vss~~IA~~~~i~~~~l~kil~ 45 (138)
T d1ylfa1 2 ISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMS 45 (138)
T ss_dssp CCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 77049999999999985899868499999997969999999999
No 196
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=30.17 E-value=14 Score=13.78 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 99999999872810365-799999857787789998344899
Q T0611 10 LLSSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
+++--..|....|-... ...||..+|++...|-..|.|+..
T Consensus 14 l~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~ 55 (68)
T d1ftta_ 14 VYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRY 55 (68)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHH
T ss_conf 999999998877777899999999849992524252522888
No 197
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=30.07 E-value=14 Score=13.77 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 1898899999999998541020
Q T0611 196 YLTPEYRERVLALREKYRPTLP 217 (227)
Q Consensus 196 ~lt~~~~~~l~~l~~~~~~~l~ 217 (227)
.++++..+.+..+..+....++
T Consensus 150 ~l~~~E~~~l~~~L~kl~~~le 171 (172)
T d2fbka1 150 PLSAQEQRTLEELAGRMLAGLE 171 (172)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999998748
No 198
>d2nrac1 a.4.5.10 (C:9-151) Replication initiation protein PI {Escherichia coli [TaxId: 562]}
Probab=29.82 E-value=14 Score=13.74 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHH------CCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999987------28103657999998577877899983
Q T0611 7 DKILLSSLELFND------KGERNITTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 7 ~~Il~aA~~lf~e------~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227)
+|||..|+..... .+.-.+|..+.++..|++..+.|...
T Consensus 25 ~Rll~~ais~i~~~~~~~~~~~~~is~~e~~~~~gv~~~~aY~~L 69 (143)
T d2nrac1 25 KRVMYMALALIDSKEPLERGRVFKIRAEDLAALAKITPSLAYRQL 69 (143)
T ss_dssp HHHHHHHHHTSCTTSCCCSSCCEEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHH
T ss_conf 999999998647899999996899999999999888905899999
No 199
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.71 E-value=13 Score=13.90 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHHH
Q ss_conf 999999987281036-57999998577877899983448999
Q T0611 11 LSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSDI 51 (227)
Q Consensus 11 ~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~L 51 (227)
..--..|.+.-|-+. +...||..+|++...|-.+|.|+..=
T Consensus 14 ~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k 55 (68)
T d2cuea1 14 EALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 55 (68)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHHH
T ss_conf 999999987689987899999999396933542327130078
No 200
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=29.43 E-value=14 Score=13.70 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHHH
Q ss_conf 9999999999987281---036-579999985778778999
Q T0611 7 DKILLSSLELFNDKGE---RNI-TTNHIAAHLAISPGNLYY 43 (227)
Q Consensus 7 ~~Il~aA~~lf~e~G~---~~~-t~~~IA~~aGvs~gtlY~ 43 (227)
++|.+.=.+.+....| +.. |.+++|+..|||+.|+-.
T Consensus 12 ~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~ 52 (100)
T d1v4ra1 12 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSR 52 (100)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999999999849999939883699999998879899999
No 201
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=29.33 E-value=14 Score=13.68 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHCCCC---------CCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999999999872810---------36579999985778778999834
Q T0611 5 TRDKILLSSLELFNDKGER---------NITTNHIAAHLAISPGNLYYHFR 46 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~---------~~t~~~IA~~aGvs~gtlY~~F~ 46 (227)
..+||...=..+-..+|-. ..|-++||.-+|+|+.++.+-++
T Consensus 2 ~~~Rla~~L~~L~~~~g~~~~~~~~i~~~lt~~elA~~~g~sretvsr~l~ 52 (80)
T d3e5ua1 2 PTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLA 52 (80)
T ss_dssp HHHHHHHHHHHHHHHHCEEETTEEECCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 889999999999998599789972886379999999998877889999999
No 202
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=28.65 E-value=14 Score=13.60 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999986598889
Q T0611 123 LAAINRIFAKLADAGIIQP 141 (227)
Q Consensus 123 ~~~~~~~l~~~i~~G~l~~ 141 (227)
...+...+..+.+.|.+..
T Consensus 60 ~~~vs~~l~~L~~~glI~~ 78 (140)
T d3deua1 60 QPSLVRTLDQLEDKGLISR 78 (140)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 7678899999970897775
No 203
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.52 E-value=14 Score=13.59 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCC-CHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 999999987281036-5799999857787789998344899
Q T0611 11 LSSLELFNDKGERNI-TTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 11 ~aA~~lf~e~G~~~~-t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
++--..|....|-.. ...+||..+|++...|-..|.|+-.
T Consensus 14 ~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~ 54 (58)
T d2craa1 14 RELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRV 54 (58)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEEECCCCHHH
T ss_conf 99999996669999899999999829997781132401222
No 204
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=28.44 E-value=14 Score=13.58 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=4.1
Q ss_pred CCHHHHHHHHCC
Q ss_conf 787789998344
Q T0611 36 ISPGNLYYHFRN 47 (227)
Q Consensus 36 vs~gtlY~~F~s 47 (227)
|+...+++.|.|
T Consensus 57 vt~~~V~~WF~N 68 (78)
T d1lfba_ 57 VTEVRVYNWFAN 68 (78)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 899999999999
No 205
>d2id6a2 a.121.1.1 (A:76-200) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=27.10 E-value=15 Score=13.41 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78999999999999998778865444441268899999999999999999999999986598889938899999999999
Q T0611 77 LEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWL 156 (227)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~ 156 (227)
.+.+......-+..+.+||..+.=+..+...+++++........+..+.....+...++...++++.+.. .++-..+|+
T Consensus 4 Fe~i~~~~~~K~~~~~~~P~~~~Fl~~~~~~~~~vk~ei~~~~~~~~~~~~~~~~~~id~~klRe~id~e-~~~~~l~~~ 82 (125)
T d2id6a2 4 FDFMERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEE-IALKFLMWF 82 (125)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCTTCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHH-HHHHHHHHH
T ss_conf 9999999999999999891899999998669887889999999999999999999864197674999999-999999999
Q ss_pred H
Q ss_conf 9
Q T0611 157 V 157 (227)
Q Consensus 157 ~ 157 (227)
.
T Consensus 83 ~ 83 (125)
T d2id6a2 83 F 83 (125)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 206
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.65 E-value=15 Score=13.36 Aligned_cols=36 Identities=36% Similarity=0.460 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 9999999999998728103657999998577877899
Q T0611 6 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLY 42 (227)
Q Consensus 6 R~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY 42 (227)
-.+|-.+..++..+.|= .-|..+||+++|+|.--+-
T Consensus 14 ~~ki~~~~~~l~q~lgR-ePT~~EiA~~l~~~~e~V~ 49 (57)
T d1l0oc_ 14 GNKIRKAKDELSKTRGR-APTVTEIADHLGISPEDVV 49 (57)
T ss_dssp HHHHHHHHHHHHHHHTS-CCBHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHH
T ss_conf 99999999999987299-9899999999793999999
No 207
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.19 E-value=16 Score=13.30 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 99999999872810365-7999998577877899983448
Q T0611 10 LLSSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 10 l~aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sK 48 (227)
+.+--..|.+..|-... ...||..+|++...|-..|.|+
T Consensus 21 ~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNr 60 (77)
T d1vnda_ 21 TYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60 (77)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHH
T ss_conf 9999999998788999999999997099756613202628
No 208
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.68 E-value=16 Score=13.23 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998659888
Q T0611 123 LAAINRIFAKLADAGIIQ 140 (227)
Q Consensus 123 ~~~~~~~l~~~i~~G~l~ 140 (227)
...+..++..+++.|.+.
T Consensus 57 ~~~vs~~v~~L~~~gli~ 74 (137)
T d2fbha1 57 GPTLARLLDGLESQGLVR 74 (137)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 989999999999857720
No 209
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.50 E-value=17 Score=13.08 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 999999872810365-79999985778778999834489
Q T0611 12 SSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 12 aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
.--.+|.+..|-... ...||..+|++...|-..|.|+.
T Consensus 41 ~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR 79 (88)
T d1b72a_ 41 ELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 79 (88)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHEEECCHHHH
T ss_conf 999999967887527899999982999778424357587
No 210
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.44 E-value=17 Score=13.07 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHH
Q ss_conf 036579999985778778999834489
Q T0611 23 RNITTNHIAAHLAISPGNLYYHFRNKS 49 (227)
Q Consensus 23 ~~~t~~~IA~~aGvs~gtlY~~F~sKe 49 (227)
.......||...|+|...|-..|.++.
T Consensus 31 s~~e~~~La~~~~l~~~qI~~WF~N~R 57 (62)
T d1x2na1 31 TEDEKKQIAAQTNLTLLQVNNWFINAR 57 (62)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999998909999379889989
No 211
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=23.45 E-value=18 Score=12.94 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 799999999999987281036579999985
Q T0611 5 TRDKILLSSLELFNDKGERNITTNHIAAHL 34 (227)
Q Consensus 5 TR~~Il~aA~~lf~e~G~~~~t~~~IA~~a 34 (227)
|.....+.+.+++.++| +|+++||+-+
T Consensus 2 ~~~~~~~~~~~~L~erG---Vt~~dIa~lv 28 (161)
T d1tlqa_ 2 TMNEMVDITKDMLNKRG---VMIEDIARIV 28 (161)
T ss_dssp CHHHHHHHHHHHHHHTT---CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC---CCHHHHHHHH
T ss_conf 68789999999999869---8899999999
No 212
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=23.25 E-value=18 Score=12.91 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=10.6
Q ss_pred CHHHHHHHHCCCHHHH
Q ss_conf 5799999857787789
Q T0611 26 TTNHIAAHLAISPGNL 41 (227)
Q Consensus 26 t~~~IA~~aGvs~gtl 41 (227)
++..+|++.|.||+++
T Consensus 16 ~lek~a~e~g~sksa~ 31 (43)
T d2cpga_ 16 NLEKMAREMGLSKSAM 31 (43)
T ss_dssp HHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHCCCCHHHH
T ss_conf 9999999808639999
No 213
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.97 E-value=18 Score=12.87 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 99999998728103-65799999857787789998344899
Q T0611 11 LSSLELFNDKGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 11 ~aA~~lf~e~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
++--..|....|-. .....||..+|++...|--.|.|+..
T Consensus 13 ~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~ 53 (57)
T d2e1oa1 13 IELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA 53 (57)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999998579999999999999958987783474122133
No 214
>d1hkqa_ a.4.5.10 (A:) Replication protein A, repA {Pseudomonas syringae pv. savastanoi [TaxId: 29438]}
Probab=22.80 E-value=18 Score=12.85 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHH------CCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999987------28103657999998577877899983
Q T0611 7 DKILLSSLELFND------KGERNITTNHIAAHLAISPGNLYYHF 45 (227)
Q Consensus 7 ~~Il~aA~~lf~e------~G~~~~t~~~IA~~aGvs~gtlY~~F 45 (227)
.||+..|+..... .+.-.+++.+.++..|++..+.|...
T Consensus 17 ~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~i~~~~~y~~l 61 (125)
T d1hkqa_ 17 KRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAAL 61 (125)
T ss_dssp HHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999746689988896899999999999789931799999
No 215
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=22.03 E-value=19 Score=12.74 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 365799999857787789998344
Q T0611 24 NITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 24 ~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
++|+.++|+...-|+-.||.|..+
T Consensus 21 ~~slhemaR~i~rSR~~ir~Yl~~ 44 (51)
T d1tc3c_ 21 NVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 876999999998859999999569
No 216
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.81 E-value=19 Score=12.71 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 377999999999999872810365799999857787789998344
Q T0611 3 MKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 47 (227)
Q Consensus 3 ~~TR~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~gtlY~~F~s 47 (227)
..||+.+-+ .++..+=-++.|-.+||+..|.|+--+.--|-+
T Consensus 8 ~~~r~~lte---~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lG 49 (86)
T d1dwka1 8 RNIRLDLAD---AILLSKAKKDLSFAEIADGTGLAEAFVTAALLG 49 (86)
T ss_dssp HHHHHHHHH---HHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred CCHHHHHHH---HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 426999999---999999983998999998959889999999845
No 217
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=21.52 E-value=19 Score=12.67 Aligned_cols=71 Identities=7% Similarity=-0.050 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999999999999987788654444412688999999999999999999999999865988899388999999999999
Q T0611 78 EDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLV 157 (227)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~G~l~~~~~~~~~~l~~~~~~~ 157 (227)
+.+...-..++++...+|.+|+.+. ..+|....... .....+..+++.+.+.+++. ...+..+|..
T Consensus 5 e~l~al~~aY~~FA~~~P~~y~lmf---~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~d~---~~~a~~lWa~ 70 (105)
T d1zk8a2 5 EAIHALGEAYVAFVRKHPGLYEATF---LRDEEVRKAGD--------GIVKLCLQVLQQYGLEGENA---LHATRGFRSI 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHTT---CCCHHHHHHHH--------HHHHHHHHHHGGGTCCHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHH---CCCCCHHHHHH--------HHHHHHHHHHHHHCCCCCCH---HHHHHHHHHH
T ss_conf 9999999999999997939889886---89812078999--------99999999998508998669---9999999999
Q ss_pred HHHHH
Q ss_conf 99988
Q T0611 158 ITNWM 162 (227)
Q Consensus 158 ~~~w~ 162 (227)
+++..
T Consensus 71 vHG~~ 75 (105)
T d1zk8a2 71 CHGFA 75 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99299
No 218
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=21.27 E-value=19 Score=12.63 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCCC-HHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 9999999872810365-799999857787789998344899
Q T0611 11 LSSLELFNDKGERNIT-TNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 11 ~aA~~lf~e~G~~~~t-~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
+.--..|.+..|-... ..+||..+|++...|--.|.|+..
T Consensus 10 ~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRa 50 (56)
T d9anta_ 10 LELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 50 (56)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCCHH
T ss_conf 99999997579999999999999939986670021411012
No 219
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=20.94 E-value=20 Score=12.59 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCH
Q ss_conf 8103657999998577877899983448
Q T0611 21 GERNITTNHIAAHLAISPGNLYYHFRNK 48 (227)
Q Consensus 21 G~~~~t~~~IA~~aGvs~gtlY~~F~sK 48 (227)
|..=.|+.+-|+.+|++.++|.+.-.|.
T Consensus 61 g~~y~S~~EAar~lgi~~~tI~~R~ks~ 88 (96)
T d1i3ja_ 61 GVIFDCAADAARHFKISSGLVTYRVKSD 88 (96)
T ss_dssp TEEESSHHHHHHHHTCCHHHHHHHHHCT
T ss_pred CEEECCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 9997069999999489837899997589
No 220
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.04 E-value=20 Score=12.45 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=22.4
Q ss_pred HHHHHHH---CCCCC-CCHHHHHHHHCCCHHHHHHHHCCHHH
Q ss_conf 9999987---28103-65799999857787789998344899
Q T0611 13 SLELFND---KGERN-ITTNHIAAHLAISPGNLYYHFRNKSD 50 (227)
Q Consensus 13 A~~lf~e---~G~~~-~t~~~IA~~aGvs~gtlY~~F~sKe~ 50 (227)
-.+.|.+ ..|-. -....||...|++...|-..|.++..
T Consensus 16 Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~ 57 (73)
T d1pufb_ 16 LNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 57 (73)
T ss_dssp HHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999843788999999999999979399996998899898
Done!