Query T0612 YP_001093860.1, Shewanella loihica PV-4, 129 residues Match_columns 129 No_of_seqs 106 out of 143 Neff 6.7 Searched_HMMs 15564 Date Mon Jul 5 08:58:35 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0612.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0612.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1p5va1 b.1.11.1 (A:7-147) Cha 90.8 0.51 3.3E-05 23.7 8.6 83 40-126 5-96 (141) 2 d1p5va1 b.1.11.1 (A:7-147) Cha 82.7 1.5 9.8E-05 20.9 9.7 82 41-126 6-96 (141) 3 d2co7b1 b.1.11.1 (B:8-135) Per 82.3 1.6 0.0001 20.8 8.9 81 43-126 7-93 (128) 4 d2vzsa2 b.1.4.1 (A:778-899) Ex 79.3 2 0.00013 20.2 10.1 82 42-124 25-110 (122) 5 d1pfoa_ f.9.1.1 (A:) Perfringo 74.9 2.7 0.00017 19.5 7.0 59 61-126 365-430 (471) 6 d1pfoa_ f.9.1.1 (A:) Perfringo 74.5 2.8 0.00018 19.4 7.3 50 72-126 374-430 (471) 7 d2j2za1 b.1.11.1 (A:1-124) Pil 56.8 6.3 0.00041 17.3 8.9 73 53-126 12-93 (124) 8 d1lm8v_ b.3.3.1 (V:) VHL {Huma 44.5 10 0.00064 16.2 6.7 34 50-87 4-37 (150) 9 d1qhoa2 b.3.1.1 (A:577-686) Cy 38.8 12 0.00079 15.7 5.7 49 55-108 57-105 (110) 10 d1lm8v_ b.3.3.1 (V:) VHL {Huma 32.0 16 0.001 15.0 6.3 49 51-110 5-53 (150) 11 d1qhoa2 b.3.1.1 (A:577-686) Cy 28.4 18 0.0012 14.7 5.7 48 56-108 58-105 (110) 12 d1bev1_ b.121.4.1 (1:) Bovine 27.8 16 0.0011 15.0 2.0 35 93-127 195-229 (268) 13 d1g43a_ b.2.2.2 (A:) Cellusoma 24.4 22 0.0014 14.2 6.7 33 54-87 19-54 (160) 14 d1zswa2 d.32.1.10 (A:145-314) 23.4 23 0.0015 14.1 2.2 17 72-88 110-126 (170) No 1 >d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} SCOP: d1p5ua1 d1l4ia1 d1klfa1 d1ze3c1 d1qpxa1 d3dpaa1 d2j2za1 Probab=90.83 E-value=0.51 Score=23.66 Aligned_cols=83 Identities=12% Similarity=-0.015 Sum_probs=54.0 Q ss_pred CCEEEEEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEC---C-CCCCCEEEEECCCCEEEEEEEC---- Q ss_conf 2504774210220487489999998466876289999999768896838---8-8876038997799508999863---- Q T0612 40 HSDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVE---D-EGVSWKSLKLHGKQQMQVTALS---- 111 (129) Q Consensus 40 ~~~i~v~~~~~~~~~g~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v~---~-~~~~W~~l~l~~~~~~~i~~va---- 111 (129) +++|.++.-+.....+-..++++|+|+.+.|.-+|- |-|+.+-+-. + .-+| --+.|.++++..|.-+. T Consensus 5 ~agi~i~~TRvi~~~~~~~~~i~v~N~~~~p~lvQ~---wv~~~~~~~~~~~~fivtP-Pl~rl~p~~~q~iRI~~~~~~ 80 (141) T d1p5va1 5 EYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQS---RIYDENKEKESEDPFVVTP-PLFRLDAKQQNSLRIAQAGGV 80 (141) T ss_dssp EEEEEESCSEEEEETTCSCEEEEEEECSSSCEEEEE---EECC---------CEEEES-SEEEECTTCEEEEEEEECSCC T ss_pred EEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEE---EEECCCCCCCCCCCEEECC-CHHEECCCCCCEEEEEECCCC T ss_conf 221682874899808998589999848995279999---8625898776657768459-444045899738999976998 Q ss_pred -CCCCEEEEEEEEEEE Q ss_conf -798405899999972 Q T0612 112 -PNATAVRCELYVREA 126 (129) Q Consensus 112 -p~~~a~~~RlylRe~ 126 (129) |..+-+-|||.++|. T Consensus 81 lP~drEs~f~l~v~eI 96 (141) T d1p5va1 81 FPRDKESLKWLCVKGI 96 (141) T ss_dssp CCSSSCEEEEEEEEEE T ss_pred CCCCCEEEEEEEEEEC T ss_conf 8768117999997415 No 2 >d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Probab=82.74 E-value=1.5 Score=20.91 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=53.5 Q ss_pred CEEEEEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEECCC----CCCCEEEEECCCCEEEEEEEC----- Q ss_conf 50477421022048748999999846687628999999976889683888----876038997799508999863----- Q T0612 41 SDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDE----GVSWKSLKLHGKQQMQVTALS----- 111 (129) Q Consensus 41 ~~i~v~~~~~~~~~g~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~----~~~W~~l~l~~~~~~~i~~va----- 111 (129) .+|.+..-+.....+...++++++|+++.|.-+|= |.|+..-.-.+. -+| --+.|.++++..|+-+. T Consensus 6 ~Gv~l~~TRvIy~~~~~~~s~~v~N~~~~p~lvQ~---wv~~~~~~~~~~~pfivtP-Pl~rl~p~~~~~lRI~~~~~~l 81 (141) T d1p5va1 6 YGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQS---RIYDENKEKESEDPFVVTP-PLFRLDAKQQNSLRIAQAGGVF 81 (141) T ss_dssp EEEEESCSEEEEETTCSCEEEEEEECSSSCEEEEE---EECC---------CEEEES-SEEEECTTCEEEEEEEECSCCC T ss_pred EEEEECCCEEEECCCCCEEEEEEEECCCCCEEEEE---EEECCCCCCCCCCCEEECC-CEEEECCCCCEEEEEEECCCCC T ss_conf 61686862899918996789999908999799999---9976987767789848759-8588889980589998468889 Q ss_pred CCCCEEEEEEEEEEE Q ss_conf 798405899999972 Q T0612 112 PNATAVRCELYVREA 126 (129) Q Consensus 112 p~~~a~~~RlylRe~ 126 (129) |..+-+-|+|.+++. T Consensus 82 P~DrEslf~l~i~~I 96 (141) T d1p5va1 82 PRDKESLKWLCVKGI 96 (141) T ss_dssp CSSSCEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEC T ss_conf 976369999999973 No 3 >d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Probab=82.32 E-value=1.6 Score=20.81 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=47.9 Q ss_pred EEEEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEECCC-CCCCEEEEECCCCEEEEEEEC-----CCCCE Q ss_conf 477421022048748999999846687628999999976889683888-876038997799508999863-----79840 Q T0612 43 VDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDE-GVSWKSLKLHGKQQMQVTALS-----PNATA 116 (129) Q Consensus 43 i~v~~~~~~~~~g~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~-~~~W~~l~l~~~~~~~i~~va-----p~~~a 116 (129) |.+..-+.....+-..+++++.|+.+.+..+|=+++ |.++-.-.+. -.| --+.|.++++.++.-+. |..+- T Consensus 7 v~l~~TRvi~~~~~~~~sv~l~N~~~~p~lvQ~~v~--~~~~~~~~~fivtP-Pl~rl~p~~~q~vRI~~~~~~lp~drE 83 (128) T d2co7b1 7 VKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVK--AADKSSPAPFLVMP-PLFRLEANQQSQLRIVRTGGDMPTDRE 83 (128) T ss_dssp CEESCSEEEEETTSSCEEEEEECCSSSCEEEEEEEE--ETTSSSBCSEEEES-SEEEECTTCEEEEEEEECCCCCCSSSC T ss_pred EEECCEEEEECCCCCEEEEEEEECCCCCEEEEEEEE--CCCCCCCCCEEEEC-CEEEECCCCCEEEEEEECCCCCCCCCE T ss_conf 998972999958997889999939998299999987--38987668789857-226898999268999966889997817 Q ss_pred EEEEEEEEEE Q ss_conf 5899999972 Q T0612 117 VRCELYVREA 126 (129) Q Consensus 117 ~~~RlylRe~ 126 (129) .-|||.+++. T Consensus 84 s~f~l~i~~I 93 (128) T d2co7b1 84 TLQWVCIKAV 93 (128) T ss_dssp EEEEEEEEEE T ss_pred EEEEEEEEEC T ss_conf 9999999975 No 4 >d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} Probab=79.31 E-value=2 Score=20.21 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=56.4 Q ss_pred EEEEEEEEEEECCCEEEEEEEEEECCCCC-EEEEEEEEEECCCCCEECCCC-CCCEEEEECCCCEEEEEEECCCCC--EE Q ss_conf 04774210220487489999998466876-289999999768896838888-760389977995089998637984--05 Q T0612 42 DVDVSAVTTQAEAGFLRARGTIISKSPKD-QRLQYKFTWYDINGATVEDEG-VSWKSLKLHGKQQMQVTALSPNAT--AV 117 (129) Q Consensus 42 ~i~v~~~~~~~~~g~~~~~v~l~N~~~~~-~~l~Yrf~WyD~~Gl~v~~~~-~~W~~l~l~~~~~~~i~~vap~~~--a~ 117 (129) .+.+.--.....+|..++.+.|.|+++.. .-+.-|+-=.|+.|=+|.|.- +. .=+.|-|+|+.+|...-+... .. T Consensus 25 ~v~~s~~~~~~~dg~~~v~vtl~N~s~~~~pAff~rL~l~d~~g~~IlPv~~sD-NY~sL~PGE~~~v~i~~~~~~~~~~ 103 (122) T d2vzsa2 25 AVGATANSVAGADGTTTTTVTLKNTSGGRLPAFYVDSKVVDSAGKPVLPVEWND-NAVSLWPGETTTLTAKYRTADLKGS 103 (122) T ss_dssp CEEEEEEEEECTTSEEEEEEEEEECCSSSCCEEEEEEEEECTTSCBCSSCEESS-CSEEECTTCEEEEEEEEEGGGGTTC T ss_pred EEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCEECCEEEEC-CEEEECCCCEEEEEEEECCCCCCCC T ss_conf 079999987358980899999971898730778999996769999940117607-7688748985999999515346787 Q ss_pred EEEEEEE Q ss_conf 8999999 Q T0612 118 RCELYVR 124 (129) Q Consensus 118 ~~RlylR 124 (129) ..+|.|. T Consensus 104 ~~~l~v~ 110 (122) T d2vzsa2 104 KPSVRIS 110 (122) T ss_dssp CCEEEEE T ss_pred CEEEEEE T ss_conf 5089993 No 5 >d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]} Probab=74.85 E-value=2.7 Score=19.47 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=35.3 Q ss_pred EEEEECCCCCEEEEEEEEE----ECCCCCEECCC---CCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEEEE Q ss_conf 9998466876289999999----76889683888---876038997799508999863798405899999972 Q T0612 61 GTIISKSPKDQRLQYKFTW----YDINGATVEDE---GVSWKSLKLHGKQQMQVTALSPNATAVRCELYVREA 126 (129) Q Consensus 61 v~l~N~~~~~~~l~Yrf~W----yD~~Gl~v~~~---~~~W~~l~l~~~~~~~i~~vap~~~a~~~RlylRe~ 126 (129) ..+..... .+ -+|..+| ||++|-++-.. +..|+..+.|=..+..| -+.|++-|+.+||. T Consensus 365 i~l~h~g~-yv-a~f~i~wde~~yd~~g~e~~~~k~w~gn~~~~ta~f~t~i~l-----~~narni~v~~~e~ 430 (471) T d1pfoa_ 365 INLDHSGA-YV-AQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPL-----EANARNIRIKAREC 430 (471) T ss_dssp EEEEECCS-SC-EEEEEEEEEEEECTTSCEEEEEEECTTTTCCBCSSEEEEEEE-----CTTEEEEEEEEEEC T ss_pred EEEECCCE-EE-EEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEC-----CCCCEEEEEEEEEC T ss_conf 57740552-79-999998421231788858501123467775444331377754-----89840458999974 No 6 >d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]} SCOP: d1m3ia_ Probab=74.51 E-value=2.8 Score=19.42 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=33.2 Q ss_pred EEEEEEEE----ECCCCCEECCC---CCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEEEE Q ss_conf 89999999----76889683888---876038997799508999863798405899999972 Q T0612 72 RLQYKFTW----YDINGATVEDE---GVSWKSLKLHGKQQMQVTALSPNATAVRCELYVREA 126 (129) Q Consensus 72 ~l~Yrf~W----yD~~Gl~v~~~---~~~W~~l~l~~~~~~~i~~vap~~~a~~~RlylRe~ 126 (129) --+|..+| ||++|-|+-.. +..|+..+.|=.. +|+ --+.|++-|+++||. T Consensus 374 va~~~i~wde~~yd~~g~e~~~~k~w~~n~~~~tahf~t--~i~---l~~n~rni~v~~~ec 430 (471) T d1pfoa_ 374 VAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYST--VIP---LEANARNIRIKAREC 430 (471) T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEECTTTTCCBCSSEEE--EEE---ECTTEEEEEEEEEEC T ss_pred EEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEE--EEE---CCCCCEEEEEEEEEE T ss_conf 999888873204177886674121105678524352178--986---188840678999842 No 7 >d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Probab=56.76 E-value=6.3 Score=17.35 Aligned_cols=73 Identities=10% Similarity=-0.037 Sum_probs=44.4 Q ss_pred CCCEEEEEEEEEECCCC-CEEEEEEEEEECCCCCEECC-CCCCCEEEEECCCCEEEEEEEC-------CCCCEEEEEEEE Q ss_conf 48748999999846687-62899999997688968388-8876038997799508999863-------798405899999 Q T0612 53 EAGFLRARGTIISKSPK-DQRLQYKFTWYDINGATVED-EGVSWKSLKLHGKQQMQVTALS-------PNATAVRCELYV 123 (129) Q Consensus 53 ~~g~~~~~v~l~N~~~~-~~~l~Yrf~WyD~~Gl~v~~-~~~~W~~l~l~~~~~~~i~~va-------p~~~a~~~Rlyl 123 (129) ..+-..+++.+.|+.+. +.-+|-...+-|.++-.-.+ .-+| --+.|.++++..+.-+. |.-+-+-|||.+ T Consensus 12 ~~~~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtP-Pl~rl~p~~~~~vRI~~~~~~~~lP~drEs~~~l~i 90 (124) T d2j2za1 12 DGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATP-PVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNL 90 (124) T ss_dssp ETTSSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEEC-SEEEECTTCEEEEEEEECGGGGGSCSSSCEEEEEEE T ss_pred ECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECC-CEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEE T ss_conf 2899779999992999965899999966998765358869879-838878998413799984777889876069999999 Q ss_pred EEE Q ss_conf 972 Q T0612 124 REA 126 (129) Q Consensus 124 Re~ 126 (129) ++. T Consensus 91 ~~I 93 (124) T d2j2za1 91 REI 93 (124) T ss_dssp EEE T ss_pred EEC T ss_conf 965 No 8 >d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1lqbc_ d1vcbc_ Probab=44.46 E-value=10 Score=16.19 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=26.2 Q ss_pred EEECCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEE Q ss_conf 22048748999999846687628999999976889683 Q T0612 50 TQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATV 87 (129) Q Consensus 50 ~~~~~g~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v 87 (129) .+..+..-...+...|.+..++ +.||.|.+|-++ T Consensus 4 lRS~~S~~p~~V~F~N~s~~~V----~l~WId~~G~~~ 37 (150) T d1lm8v_ 4 LRSVNSREPSQVIFCNRSPRVV----LPVWLNFDGEPQ 37 (150) T ss_dssp SCCCCCCCEEEEEEEECSSSCE----EEEEECTTSCEE T ss_pred CCCCCCCCEEEEEEECCCCCEE----EEEEECCCCCEE T ss_conf 4436778637999981899888----999976889630 No 9 >d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Probab=38.81 E-value=12 Score=15.68 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=33.3 Q ss_pred CEEEEEEEEEECCCCCEEEEEEEEEECCCCCEECCCCCCCEEEEECCCCEEEEE Q ss_conf 748999999846687628999999976889683888876038997799508999 Q T0612 55 GFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVT 108 (129) Q Consensus 55 g~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~i~ 108 (129) +.=++.+.+.- ...++|||.=.|.+|-.+-..+. -|.+.++...+.++. T Consensus 57 ~~W~~~v~lp~----~~~~eYKyvi~~~~g~~~WE~g~-NR~~~~p~~~~~~v~ 105 (110) T d1qhoa2 57 PDWFYVFSVPA----GKTIQFKFFIKRADGTIQWENGS-NHVATTPTGATGNIT 105 (110) T ss_dssp TSEEEEEEEET----TCEEEEEEEEECTTSCEEECCSS-CEEEECCSSSEEEEE T ss_pred CEEEEEEEECC----CCEEEEEEEEECCCCCEEECCCC-CEEEECCCCCCEEEE T ss_conf 83999999789----99799999999399988980799-989993799848999 No 10 >d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]} Probab=32.02 E-value=16 Score=15.03 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=31.0 Q ss_pred EECCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEECCCCCCCEEEEECCCCEEEEEEE Q ss_conf 204874899999984668762899999997688968388887603899779950899986 Q T0612 51 QAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTAL 110 (129) Q Consensus 51 ~~~~g~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~i~~v 110 (129) +..+..-...+...|.+..++ +.||.|.+|=++. +. .|.++++..+.-- T Consensus 5 RS~~S~~p~~V~FvN~s~~~v----~l~WId~~G~~~~-----Y~--~L~PG~~~~~~Tf 53 (150) T d1lm8v_ 5 RSVNSREPSQVIFCNRSPRVV----LPVWLNFDGEPQP-----YP--TLPPGTGRRIHSY 53 (150) T ss_dssp CCCCCCCEEEEEEEECSSSCE----EEEEECTTSCEEE-----CC--CBCTTEEEEEEEE T ss_pred CCCCCCCCEEEEEECCCCCEE----EEEEECCCCCEEE-----EE--EECCCCEEEECCC T ss_conf 458899977999992989888----8999878998877-----35--6889986771256 No 11 >d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} SCOP: d1cyga2 d1ciua2 d1cgta2 d1peza2 d1kcla2 d3cgta2 d1tcma2 d1d3ca2 d1uksa2 d1pama2 d1kula_ Probab=28.35 E-value=18 Score=14.66 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=32.7 Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCCCCEECCCCCCCEEEEECCCCEEEEE Q ss_conf 48999999846687628999999976889683888876038997799508999 Q T0612 56 FLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVT 108 (129) Q Consensus 56 ~~~~~v~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~i~ 108 (129) .=.+.+.+.. ...++|||.=.|.+|-.+...+. =|.+.++.+++.++. T Consensus 58 ~W~~~v~lp~----~~~~eYKyvi~~~~g~~~WE~g~-NR~~~~p~~~~~~v~ 105 (110) T d1qhoa2 58 DWFYVFSVPA----GKTIQFKFFIKRADGTIQWENGS-NHVATTPTGATGNIT 105 (110) T ss_dssp SEEEEEEEET----TCEEEEEEEEECTTSCEEECCSS-CEEEECCSSSEEEEE T ss_pred EEEEEEEECC----CCEEEEEEEEECCCCEEEEEECC-CCEEEECCCCCEEEE T ss_conf 4899888289----98078988997489818872099-848882799846999 No 12 >d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]} Probab=27.81 E-value=16 Score=14.96 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.2 Q ss_pred CCEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEC Q ss_conf 60389977995089998637984058999999720 Q T0612 93 SWKSLKLHGKQQMQVTALSPNATAVRCELYVREAI 127 (129) Q Consensus 93 ~W~~l~l~~~~~~~i~~vap~~~a~~~RlylRe~~ 127 (129) .+-...++-.++..++.+........+|||+|-++ T Consensus 195 ~YG~~p~N~mGtl~~R~v~~~~~~~~vrVY~kpKh 229 (268) T d1bev1_ 195 RYGILPSNFLGFMYFRTLEDAAHQVRFRIYAKIKH 229 (268) T ss_dssp GBTCCGGGCCCEEEEEESSCCSSCCEEEEEEEEEE T ss_pred CCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECC T ss_conf 56755646765589998627987279999986034 No 13 >d1g43a_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium cellulolyticum [TaxId: 1521]} Probab=24.37 E-value=22 Score=14.23 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=23.3 Q ss_pred CCEEEEEEEEEECCCCCEE---EEEEEEEECCCCCEE Q ss_conf 8748999999846687628---999999976889683 Q T0612 54 AGFLRARGTIISKSPKDQR---LQYKFTWYDINGATV 87 (129) Q Consensus 54 ~g~~~~~v~l~N~~~~~~~---l~Yrf~WyD~~Gl~v 87 (129) ...++..+.|.|+...|.. |..| ||||.+|..- T Consensus 19 ~n~I~~~~~i~N~g~~p~~lsdl~~R-Yyft~d~~~~ 54 (160) T d1g43a_ 19 SNSIYARFKVTNTSGSPINLADLKLR-YYYTQDADKP 54 (160) T ss_dssp ESCEEEEEEEEECSSSCEEGGGEEEE-EEECCSSCCC T ss_pred CCEEEEEEEEEECCCCCCCCCCEEEE-EEECCCCCCC T ss_conf 87686999999698898302755999-9993566402 No 14 >d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]} Probab=23.38 E-value=23 Score=14.12 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.8 Q ss_pred EEEEEEEEECCCCCEEC Q ss_conf 89999999768896838 Q T0612 72 RLQYKFTWYDINGATVE 88 (129) Q Consensus 72 ~l~Yrf~WyD~~Gl~v~ 88 (129) ...+.||++|.+|..++ T Consensus 110 ~~~~s~Yf~DPdG~~iE 126 (170) T d1zswa2 110 FYFKSLYFRESNGILFE 126 (170) T ss_dssp SSEEEEEEECTTCCEEE T ss_pred CCEEEEEEECCCCCEEE T ss_conf 97899999879995899 Done!