Query T0613 NP_949368.1, RHODOPSEUDOMONAS PALUSTRIS CGA009, 287 residues Match_columns 287 No_of_seqs 212 out of 1728 Neff 5.5 Searched_HMMs 22458 Date Mon Jul 5 09:11:44 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0613.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0613.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3lou_A Formyltetrahydrofolate 100.0 0 0 672.8 35.5 282 4-286 9-292 (292) 2 2ywr_A Phosphoribosylglycinami 100.0 0 0 401.7 25.1 198 89-286 2-201 (216) 3 3da8_A Probable 5'-phosphoribo 100.0 0 0 366.1 23.9 200 83-283 7-207 (215) 4 1jkx_A GART;, phosphoribosylgl 100.0 0 0 360.6 25.6 198 89-286 1-200 (212) 5 3kcq_A Phosphoribosylglycinami 100.0 0 0 353.9 23.5 197 84-284 4-201 (215) 6 1meo_A Phosophoribosylglycinam 100.0 0 0 346.2 25.2 198 89-286 1-200 (209) 7 1fmt_A Methionyl-tRNA FMet for 100.0 1.1E-32 4.7E-37 239.2 18.8 179 86-276 1-192 (314) 8 1z7e_A Protein aRNA; rossmann 100.0 9.7E-32 4.3E-36 232.7 18.8 176 89-276 1-186 (660) 9 2bw0_A 10-FTHFDH, 10-formyltet 100.0 1.2E-31 5.3E-36 232.1 15.1 185 85-276 19-211 (329) 10 2bln_A Protein YFBG; transfera 100.0 2.2E-30 9.8E-35 223.6 18.8 176 89-276 1-186 (305) 11 1zgh_A Methionyl-tRNA formyltr 99.9 3.4E-22 1.5E-26 168.5 12.2 162 96-274 15-179 (260) 12 1zpv_A ACT domain protein; str 99.7 1.1E-16 4.9E-21 131.5 10.4 81 4-87 4-84 (91) 13 1u8s_A Glycine cleavage system 99.6 2.2E-14 9.9E-19 115.9 14.5 161 1-170 1-175 (192) 14 2nyi_A Unknown protein; protei 99.5 1.4E-13 6.4E-18 110.5 11.9 157 3-170 3-172 (195) 15 1u8s_A Glycine cleavage system 99.2 2.7E-10 1.2E-14 88.5 10.3 86 3-89 91-182 (192) 16 2nyi_A Unknown protein; protei 99.0 1E-09 4.5E-14 84.6 8.5 82 4-87 92-177 (195) 17 2ko1_A CTR148A, GTP pyrophosph 98.0 2.2E-05 9.8E-10 55.5 8.5 71 1-77 1-71 (88) 18 1ygy_A PGDH, D-3-phosphoglycer 97.0 0.0021 9.3E-08 42.2 7.1 147 113-275 139-308 (529) 19 1y7p_A Hypothetical protein AF 97.0 0.001 4.5E-08 44.3 5.4 86 6-97 5-96 (223) 20 2fgc_A Acetolactate synthase, 96.8 0.014 6.1E-07 36.7 10.1 104 3-108 27-132 (193) 21 2f1f_A Acetolactate synthase i 96.2 0.0044 2E-07 40.0 4.6 68 3-72 1-68 (164) 22 3mtj_A Homoserine dehydrogenas 96.1 0.023 1E-06 35.2 7.7 49 89-142 79-134 (444) 23 2dt9_A Aspartokinase; protein- 95.5 0.062 2.7E-06 32.3 7.7 93 4-101 15-108 (167) 24 2f06_A Conserved hypothetical 95.4 0.033 1.5E-06 34.1 6.3 41 7-47 8-48 (144) 25 2pc6_A Probable acetolactate s 95.4 0.033 1.5E-06 34.1 6.3 69 4-77 3-71 (165) 26 1f0k_A MURG, UDP-N-acetylgluco 94.1 0.31 1.4E-05 27.6 8.4 51 202-257 262-321 (364) 27 1sc6_A PGDH, D-3-phosphoglycer 92.6 0.29 1.3E-05 27.7 6.3 105 113-223 142-258 (404) 28 2dtj_A Aspartokinase; protein- 92.4 0.33 1.5E-05 27.4 6.4 96 3-102 13-109 (178) 29 2f06_A Conserved hypothetical 92.0 0.28 1.2E-05 27.9 5.6 36 7-42 74-109 (144) 30 3k5p_A D-3-phosphoglycerate de 91.9 0.4 1.8E-05 26.8 6.4 133 113-255 153-310 (416) 31 3luy_A Probable chorismate mut 91.4 0.78 3.5E-05 24.9 8.9 20 156-175 268-287 (329) 32 2re1_A Aspartokinase, alpha an 90.4 0.62 2.8E-05 25.5 6.1 88 4-97 24-112 (167) 33 3c1m_A Probable aspartokinase; 88.7 1.2 5.4E-05 23.6 6.6 22 17-38 333-354 (473) 34 2o4u_X Dimeric dihydrodiol deh 85.5 1.3 5.7E-05 23.4 5.2 88 100-196 56-153 (334) 35 2d13_A Hypothetical protein PH 84.9 2 9.1E-05 22.1 7.0 139 88-237 4-163 (227) 36 2cdq_A Aspartokinase; aspartat 84.5 2.1 9.5E-05 21.9 8.7 33 6-38 342-377 (510) 37 1zhv_A Hypothetical protein AT 84.1 0.82 3.6E-05 24.7 3.7 54 7-74 64-120 (134) 38 3btv_A Galactose/lactose metab 81.3 2.8 0.00013 21.1 8.5 74 101-184 80-163 (438) 39 2pn1_A Carbamoylphosphate synt 80.2 2.9 0.00013 21.0 5.4 69 3-80 2-75 (331) 40 1nvm_B Acetaldehyde dehydrogen 76.7 3.8 0.00017 20.3 5.0 55 86-142 2-57 (312) 41 1zvp_A Hypothetical protein VC 75.7 2.1 9.5E-05 21.9 3.6 32 8-39 76-108 (133) 42 3cea_A MYO-inositol 2-dehydrog 72.6 4.8 0.00022 19.5 9.9 77 100-184 61-140 (346) 43 3db2_A Putative NADPH-dependen 72.1 5 0.00022 19.5 6.2 76 100-184 56-134 (354) 44 2p2s_A Putative oxidoreductase 69.6 5.6 0.00025 19.1 5.8 128 3-182 2-133 (336) 45 1tdj_A Biosynthetic threonine 69.6 1.8 8.1E-05 22.4 2.0 178 87-274 77-304 (514) 46 3euw_A MYO-inositol dehydrogen 69.6 5.6 0.00025 19.1 7.2 86 100-194 55-150 (344) 47 2jhe_A Transcription regulator 66.9 6.4 0.00028 18.7 4.4 31 7-37 2-32 (190) 48 3a14_A 1-deoxy-D-xylulose 5-ph 65.6 6.7 0.0003 18.6 7.2 118 87-238 2-130 (376) 49 3m2t_A Probable dehydrogenase; 62.7 7.6 0.00034 18.2 7.0 90 100-197 58-156 (359) 50 1ybh_A Acetolactate synthase, 62.7 7 0.00031 18.5 3.9 40 101-143 203-246 (590) 51 3evn_A Oxidoreductase, GFO/IDH 61.7 7.9 0.00035 18.1 4.9 86 100-194 57-152 (329) 52 3ec7_A Putative dehydrogenase; 61.2 8.1 0.00036 18.0 8.0 100 100-207 77-191 (357) 53 1g8l_A Molybdopterin biosynthe 60.9 8.2 0.00036 18.0 6.1 91 83-184 172-262 (411) 54 2qo3_A Eryaii erythromycin pol 57.2 9.4 0.00042 17.6 4.0 93 4-100 445-543 (915) 55 1zxx_A 6-phosphofructokinase; 57.0 9.5 0.00042 17.6 4.2 34 3-36 1-37 (319) 56 1uz5_A MOEA protein, 402AA lon 53.9 11 0.00047 17.2 5.9 129 29-182 135-263 (402) 57 2nvw_A Galactose/lactose metab 52.4 11 0.0005 17.1 9.6 78 100-184 98-183 (479) 58 3mah_A Aspartokinase; aspartat 52.0 11 0.00051 17.0 4.0 34 5-38 18-54 (157) 59 1req_B Methylmalonyl-COA mutas 50.7 12 0.00053 16.9 7.9 45 133-177 556-600 (637) 60 1z2m_A ISG15, interferon, alph 50.5 12 0.00053 16.9 5.3 59 217-276 66-131 (155) 61 1qv9_A F420-dependent methylen 50.0 12 0.00054 16.8 7.4 88 78-171 20-119 (283) 62 1gso_A Protein (glycinamide ri 49.4 7.1 0.00032 18.4 2.2 98 100-204 53-157 (431) 63 3ezy_A Dehydrogenase; structur 48.5 13 0.00057 16.7 8.9 76 100-184 54-132 (344) 64 2kk8_A Uncharacterized protein 48.2 1.3 6E-05 23.3 -1.7 45 237-282 22-66 (84) 65 1ni5_A Putative cell cycle pro 48.0 13 0.00058 16.6 6.6 15 132-146 167-181 (433) 66 1r0k_A 1-deoxy-D-xylulose 5-ph 47.2 13 0.0006 16.6 5.6 56 86-144 2-60 (388) 67 1v8b_A Adenosylhomocysteinase; 46.6 14 0.00061 16.5 5.2 59 113-173 68-135 (479) 68 2f8n_G Core histone macro-H2A. 46.4 4.2 0.00019 19.9 0.6 17 187-203 103-119 (120) 69 1tzy_A Histone H2A-IV; histone 46.0 4.1 0.00018 20.0 0.5 18 187-204 106-123 (129) 70 2wje_A CPS4B, tyrosine-protein 45.6 14 0.00063 16.4 3.7 38 190-227 165-209 (247) 71 3beo_A UDP-N-acetylglucosamine 45.2 14 0.00064 16.4 11.6 34 1-35 5-40 (375) 72 1xea_A Oxidoreductase, GFO/IDH 45.1 7.6 0.00034 18.2 1.8 75 100-184 54-131 (323) 73 1uh6_A Ubiquitin-like 5; beta- 45.1 14 0.00064 16.3 4.2 59 213-276 20-78 (100) 74 2pan_A Glyoxylate carboligase; 44.6 14 0.00064 16.4 3.1 40 101-143 215-260 (616) 75 2jfz_A Glutamate racemase; cel 44.1 15 0.00066 16.2 4.6 10 163-172 171-180 (255) 76 1wia_A Hypothetical ubiquitin- 44.0 1 4.5E-05 24.1 -2.9 39 237-279 19-57 (95) 77 1id3_C Histone H2A.1; nucleoso 42.2 5.1 0.00023 19.4 0.5 16 187-202 106-121 (131) 78 2fts_A Gephyrin; gephyrin, neu 41.3 16 0.00073 16.0 6.1 103 83-196 176-287 (419) 79 3c1a_A Putative oxidoreductase 41.1 9.7 0.00043 17.5 1.8 76 100-184 59-137 (315) 80 1v2y_A 3300001G02RIK protein; 41.1 16 0.0007 16.1 2.9 25 238-262 20-44 (105) 81 3dlo_A Universal stress protei 40.6 17 0.00075 15.9 8.2 108 42-175 18-127 (155) 82 1ydw_A AX110P-like protein; st 39.8 17 0.00077 15.8 10.3 76 100-184 61-139 (362) 83 2q8n_A Glucose-6-phosphate iso 39.6 17 0.00078 15.8 7.0 151 86-237 138-353 (460) 84 2dwc_A PH0318, 433AA long hypo 39.2 18 0.00079 15.8 5.7 28 7-37 21-49 (433) 85 1b73_A Glutamate racemase; iso 39.0 18 0.00079 15.7 5.5 16 157-172 54-69 (254) 86 2jfn_A Glutamate racemase; cel 38.8 18 0.0008 15.7 4.9 26 83-108 16-43 (285) 87 2nqb_C Histone H2A; nucleosome 38.7 6.3 0.00028 18.7 0.5 15 189-203 106-120 (123) 88 1t9b_A Acetolactate synthase, 37.8 19 0.00083 15.6 3.1 71 101-173 278-364 (677) 89 1vpa_A 2-C-methyl-D-erythritol 37.6 19 0.00083 15.6 10.8 103 82-186 6-128 (234) 90 2iht_A Carboxyethylarginine sy 37.1 15 0.00066 16.2 2.2 68 129-198 236-323 (573) 91 2f8n_K Histone H2A type 1; nuc 36.0 7.3 0.00033 18.3 0.5 17 187-203 125-141 (149) 92 2c82_A 1-deoxy-D-xylulose 5-ph 35.9 20 0.00088 15.4 11.4 141 85-268 9-162 (413) 93 3ksu_A 3-oxoacyl-acyl carrier 35.4 20 0.0009 15.4 3.1 33 1-34 1-39 (262) 94 1jyk_A LICC protein, CTP:phosp 35.2 20 0.00091 15.3 5.5 83 88-173 25-127 (254) 95 2dtx_A Glucose 1-dehydrogenase 33.5 22 0.00097 15.2 6.9 64 7-77 10-73 (264) 96 1wu2_A MOEA protein, molybdopt 33.5 22 0.00097 15.2 4.3 86 83-177 177-262 (396) 97 1v5o_A 1700011N24RIK protein; 31.9 8.8 0.00039 17.8 0.4 38 239-277 25-62 (102) 98 2axq_A Saccharopine dehydrogen 31.8 23 0.001 15.0 11.2 22 7-30 25-46 (467) 99 1wy5_A TILS, hypothetical UPF0 31.3 24 0.001 14.9 8.8 89 82-173 20-133 (317) 100 2kan_A Uncharacterized protein 31.3 3 0.00014 20.9 -2.1 38 239-277 28-65 (94) 101 2c31_A Oxalyl-COA decarboxylas 31.0 24 0.0011 14.9 7.1 41 101-144 202-248 (568) 102 3eya_A Pyruvate dehydrogenase 30.7 24 0.0011 14.9 2.6 50 95-144 184-234 (549) 103 2j0w_A Lysine-sensitive aspart 30.3 24 0.0011 14.8 4.3 12 166-177 176-187 (449) 104 2yxb_A Coenzyme B12-dependent 30.1 25 0.0011 14.8 7.5 63 86-175 16-79 (161) 105 3a2k_A TRNA(Ile)-lysidine synt 29.6 25 0.0011 14.7 6.5 14 159-172 113-126 (464) 106 2yvt_A Hypothetical protein AQ 29.6 23 0.001 15.0 2.2 17 14-30 16-32 (260) 107 2bkw_A Alanine-glyoxylate amin 29.5 25 0.0011 14.7 10.9 81 92-172 61-144 (385) 108 1ozh_A ALS, acetolactate synth 29.3 25 0.0011 14.7 3.6 48 97-144 192-242 (566) 109 1vma_A Cell division protein F 29.2 25 0.0011 14.7 7.6 196 21-234 50-268 (306) 110 1f66_C Histone H2A.Z; nucleoso 28.6 10 0.00046 17.3 0.3 14 188-201 109-122 (128) 111 3dm5_A SRP54, signal recogniti 28.3 26 0.0012 14.6 6.1 202 20-228 33-252 (443) 112 3k32_A Uncharacterized protein 28.2 26 0.0012 14.6 4.9 59 85-147 3-67 (203) 113 2der_A TRNA-specific 2-thiouri 28.0 27 0.0012 14.6 6.9 19 68-86 69-87 (380) 114 1m94_A HUB1, protein YNR032C-A 27.6 27 0.0012 14.5 3.0 39 237-276 33-71 (93) 115 2a0u_A Initiation factor 2B; S 27.6 27 0.0012 14.5 7.7 65 96-172 193-263 (383) 116 1h6d_A Precursor form of gluco 27.5 27 0.0012 14.5 5.7 38 155-194 191-235 (433) 117 2v3c_C SRP54, signal recogniti 27.1 28 0.0012 14.5 2.2 208 18-232 29-255 (432) 118 3edm_A Short chain dehydrogena 26.6 28 0.0013 14.4 3.5 35 1-36 1-38 (259) 119 2yut_A Putative short-chain ox 26.5 28 0.0013 14.4 5.0 72 184-256 110-193 (207) 120 2kg4_A Growth arrest and DNA-d 25.8 29 0.0013 14.3 3.6 12 61-72 15-26 (165) 121 3ff1_A Glucose-6-phosphate iso 25.0 30 0.0013 14.2 3.8 143 89-233 134-337 (446) 122 1yqb_A Ubiquilin 3; structural 24.9 30 0.0013 14.2 3.3 39 237-276 33-71 (100) 123 3bpd_A Uncharacterized protein 24.8 30 0.0014 14.2 6.8 67 1-74 1-74 (100) 124 3e9m_A Oxidoreductase, GFO/IDH 24.6 31 0.0014 14.1 8.1 141 1-194 1-152 (330) 125 2i4r_A V-type ATP synthase sub 24.6 31 0.0014 14.1 6.5 85 117-210 10-98 (102) 126 1vr9_A CBS domain protein/ACT 24.5 12 0.00054 16.8 0.0 18 19-36 32-49 (213) 127 1pqw_A Polyketide synthase; ro 24.3 31 0.0014 14.1 7.8 80 89-176 38-118 (198) 128 1ulr_A Putative acylphosphatas 23.9 32 0.0014 14.1 5.3 59 64-123 16-74 (88) 129 1mvl_A PPC decarboxylase athal 23.6 32 0.0014 14.0 4.7 41 83-126 14-56 (209) 130 2nzc_A Hypothetical protein; s 23.5 32 0.0014 14.0 3.1 75 1-80 3-77 (86) 131 1phz_A Protein (phenylalanine 23.5 32 0.0014 14.0 4.6 68 5-78 34-104 (429) 132 2jfq_A Glutamate racemase; cel 23.4 32 0.0014 14.0 4.6 10 163-172 194-203 (286) 133 2hma_A Probable tRNA (5-methyl 23.4 32 0.0014 14.0 6.7 112 5-141 11-127 (376) 134 2j28_9 Signal recognition part 23.3 32 0.0014 14.0 5.7 210 18-233 29-257 (430) 135 1tmy_A CHEY protein, TMY; chem 23.3 32 0.0014 14.0 2.2 56 157-216 39-99 (120) 136 1zh8_A Oxidoreductase; TM0312, 23.0 33 0.0015 13.9 9.6 77 100-185 72-151 (340) 137 2ew9_A Copper-transporting ATP 22.5 33 0.0015 13.9 7.8 99 1-108 1-101 (149) 138 3m63_B Ubiquitin domain-contai 22.1 34 0.0015 13.8 2.3 37 239-276 41-77 (101) 139 1wz3_A Autophagy 12B, ATG12B, 22.1 34 0.0015 13.8 4.2 53 216-281 10-62 (96) 140 1z05_A Transcriptional regulat 22.1 34 0.0015 13.8 2.8 30 157-186 349-378 (429) 141 2uz1_A Benzaldehyde lyase; thi 21.8 35 0.0015 13.8 5.9 14 131-144 226-239 (563) 142 1uuy_A CNX1, molybdopterin bio 21.7 35 0.0015 13.8 8.0 76 85-177 2-83 (167) 143 1rwu_A Hypothetical UPF0250 pr 21.6 35 0.0016 13.8 6.9 66 5-75 36-102 (109) 144 2kdi_A Ubiquitin, vacuolar pro 21.6 35 0.0016 13.8 3.0 11 61-71 31-41 (114) 145 2dzi_A Ubiquitin-like protein 21.2 36 0.0016 13.7 3.0 36 239-275 21-56 (81) 146 2ffh_A Protein (FFH); SRP54, s 21.2 36 0.0016 13.7 6.7 231 19-257 31-293 (425) 147 1ccw_A Protein (glutamate muta 21.0 36 0.0016 13.7 7.8 68 97-164 13-81 (137) 148 3g9q_A Ferrichrome-binding pro 20.6 19 0.00087 15.5 0.4 16 160-175 66-81 (279) 149 2jjm_A Glycosyl transferase, g 20.5 37 0.0016 13.6 5.0 61 191-258 287-347 (394) 150 1j8c_A Ubiquitin-like protein 20.4 37 0.0016 13.6 4.2 12 60-71 52-63 (125) 151 1w2i_A Acylphosphatase; hydrol 20.3 37 0.0017 13.6 4.5 59 64-123 18-76 (91) 152 1m1n_A Nitrogenase molybdenum- 20.2 37 0.0017 13.6 4.5 141 99-259 255-416 (491) 153 2nu8_A Succinyl-COA ligase [AD 20.0 38 0.0017 13.6 3.6 31 94-124 149-179 (288) 154 2bjd_A Acylphosphatase; hypert 20.0 38 0.0017 13.6 5.0 59 64-123 28-86 (101) No 1 >3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} Probab=100.00 E-value=0 Score=672.77 Aligned_cols=282 Identities=52% Similarity=0.844 Sum_probs=274.2 Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECC--CCCCCHHHHHHHHHHHHHHHCCCHH Q ss_conf 70899998499974699999999975984877111024565768999999628--7778989999999999987252010 Q T0613 4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA--AKVIPLASLRTGFGVIAAKFTMGWH 81 (287) Q Consensus 4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~--~~~~~~~~L~~al~~la~~~~~~i~ 81 (287) ++||||++|||++||||+||++|+++|+||++++||+|..+++||||++|+.. ...+++++|+++|.+++++|+|+|+ T Consensus 9 ~~~iL~~~CpD~~GiVa~Vs~~l~~~g~nI~~~~q~~D~~~~~FFmR~~f~~~~~~~~~~~~~l~~~f~~ia~~~~m~~~ 88 (292) T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWA 88 (292) T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEE T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 72899998999886499999999978999858745348888807898999715885533889999988877765188300 Q ss_pred HCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH Q ss_conf 00135634279998067877799999996689994389997288678999999569959982888888789999999999 Q T0613 82 MRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALI 161 (287) Q Consensus 82 i~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l 161 (287) +++.++|+|+|||+||+|||||+||+|+++|+|++||++|||||++++.. |+.++||+++++.++.+|.++|+++++.+ T Consensus 89 i~~~~~~~riaVlvS~~g~~L~~ll~~~~~g~l~~eI~~ViSN~~~~~~l-a~~~~ip~~~~~~~~~~~~~~e~~l~~~l 167 (292) T 3lou_A 89 IHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAPL-AAQHGLPFRHFPITADTKAQQEAQWLDVF 167 (292) T ss_dssp EEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHHH-HHHTTCCEEECCCCSSCHHHHHHHHHHHH T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 25546784599997699836999999987799874899995489575999-98626998999568885678999999999 Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEE Q ss_conf 84489999981221017978998417998983304278766631699999817908556899870788879764001575 Q T0613 162 AQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVER 241 (287) Q Consensus 162 ~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~ 241 (287) +++++|||||||||||||++|+++|++|+|||||||||+|+|++||+||+++|+|.+|||+||||+++|+||||.|.+++ T Consensus 168 ~~~~~Dlivlagym~Il~~~~~~~~~~~iINiHpSlLP~f~G~~~~~~a~~~g~k~~G~TvH~V~~~lD~GpII~Q~~~~ 247 (292) T 3lou_A 168 ETSGAELVILARYMQVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVER 247 (292) T ss_dssp HHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEE T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEE T ss_conf 75498199980126707899997314781896555376788930999999839987778899996888788806899986 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC Q ss_conf 388989899999999988999999999885983898267489844 Q T0613 242 ISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286 (287) Q Consensus 242 V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf~ 286 (287) |.++||+++|.+|++++|+++|++||+|++|+||.++|||||||- T Consensus 248 V~~~dt~~~L~~r~~~~E~~ll~~ai~~~~e~rv~~~g~ktvvF~ 292 (292) T 3lou_A 248 VDHSYRPEQLLAVGRDVECITLARAVKAFIERRVFLNGDRTVVFQ 292 (292) T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEECC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEC T ss_conf 599999999999999999999999999998099898499889969 No 2 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Probab=100.00 E-value=0 Score=401.69 Aligned_cols=198 Identities=27% Similarity=0.445 Sum_probs=191.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHH-HHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCC Q ss_conf 42799980678777999999966899943899972886789-999995699599828888-8878999999999984489 Q T0613 89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRET-FSGFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHT 166 (287) Q Consensus 89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~-~~~a~~~~Ip~~~~~~~~-~~r~~~e~~l~~~l~~~~~ 166 (287) +|||||+||+||||++|++++++|+++++|++|+||++++. .++|+++|||+++++.+. .+|+++|+++++.++++++ T Consensus 2 ~rIavl~Sg~Gsnl~all~a~~~g~~~~~Iv~Vitn~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (216) T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGV 81 (216) T ss_dssp EEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 78999982898019999999877999986999997388658899999879998985734689878999999999997699 Q ss_pred CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCC Q ss_conf 99998122101797899841799898330427876663169999981790855689987078887976400157538898 Q T0613 167 DLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRD 246 (287) Q Consensus 167 DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d 246 (287) ||+|+||||+||+++|++.|++++||+||||||+|+|.+|++||+.+|++.+|||+|||++++|+||||.|+.+||.++| T Consensus 82 Dliv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~~~~~ai~~g~~~tG~TvH~v~~~~D~G~Ii~Q~~v~i~~~d 161 (216) T 2ywr_A 82 ELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPED 161 (216) T ss_dssp CEEEESSCCSCCCHHHHTTSTTCEEEEESSCTTTTCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTTC T ss_pred CEEEHHHHHHHCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEECEEEEEECCCCCCCCEEEEEEEECCCCC T ss_conf 99983471103799999643389699505416588895499999986998633089997478878985899998649999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC Q ss_conf 9899999999988999999999885983898267489844 Q T0613 247 TPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286 (287) Q Consensus 247 t~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf~ 286 (287) |.++|.+|++++|+++|++++++++++|+.++|+|+++.- T Consensus 162 t~~~L~~r~~~~e~~ll~~~i~~~~~g~~~~~~~~~~~~~ 201 (216) T 2ywr_A 162 DENTLADRILKWEHKILPQTVQWFAQDRIIIDGRKVIVKD 201 (216) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEETT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEECCC T ss_conf 9999999999999999999999998199899699871589 No 3 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Probab=100.00 E-value=0 Score=366.08 Aligned_cols=200 Identities=28% Similarity=0.384 Sum_probs=189.3 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHH Q ss_conf 01356342799980678777999999966899943899972886789999995699599828888-88789999999999 Q T0613 83 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNK-DTRRQQEAAITALI 161 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~-~~r~~~e~~l~~~l 161 (287) ..+++|+|||||+||+||||++|+++. .|+++++|++|+||+++....+|+++|||+++++... .+|+++|.++.+.+ T Consensus 7 ~~~~~p~rI~Vl~SG~GSnl~aLl~~~-~~~~~~~Iv~Visn~~~~~~~~A~~~gIp~~~i~~~~~~~r~~~d~~i~~~l 85 (215) T 3da8_A 7 VPPSAPARLVVLASGTGSLLRSLLDAA-VGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAAT 85 (215) T ss_dssp ECCCSSEEEEEEESSCCHHHHHHHHHS-STTCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHH-CCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 899998889999837815599999963-8799977999995686667665343168646740221013678888877655 Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEE Q ss_conf 84489999981221017978998417998983304278766631699999817908556899870788879764001575 Q T0613 162 AQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVER 241 (287) Q Consensus 162 ~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~ 241 (287) +++++|++|++|||+||+++|++.|+.++||+||||||.|+|.+|+.||+.+|++.+|||+|||++++|+||||.|..++ T Consensus 86 ~~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~~~~~~ai~~g~~~~G~TvH~v~~~~D~G~Ii~q~~~~ 165 (215) T 3da8_A 86 AAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVP 165 (215) T ss_dssp HTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEE T ss_pred HHHCCCEEEECCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCEECEEEEEEECCCCCCCEEEEEEEE T ss_conf 43033214411410243010000122223333777643200232045676448827540789972566765267778998 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEE Q ss_conf 388989899999999988999999999885983898267489 Q T0613 242 ISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTV 283 (287) Q Consensus 242 V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktv 283 (287) |.++||+++|.+|++.+|+.+|++++++++++++.+.+++.. T Consensus 166 i~~~dt~~~L~~r~~~~~~~ll~~~l~~i~~~~i~~~~~~a~ 207 (215) T 3da8_A 166 VLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTAT 207 (215) T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEE T ss_conf 089999999999999999999999999998299879898979 No 4 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Probab=100.00 E-value=0 Score=360.62 Aligned_cols=198 Identities=24% Similarity=0.358 Sum_probs=188.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHH-HHHHHHCCCCEEECCCC-CCCHHHHHHHHHHHHHHCCC Q ss_conf 42799980678777999999966899943899972886789-99999569959982888-88878999999999984489 Q T0613 89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRET-FSGFDFGDIPFYHFPVN-KDTRRQQEAAITALIAQTHT 166 (287) Q Consensus 89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~-~~~a~~~~Ip~~~~~~~-~~~r~~~e~~l~~~l~~~~~ 166 (287) +|+|||+||+||||++|+++++.|+++++|++|+||++++. ..+++..++|....... ..++..++..+.+.++++++ T Consensus 1 Mki~il~SG~Gsnl~~ll~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (212) T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAP 80 (212) T ss_dssp CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCC T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 97999982684789999998870999988999997898627788877505650565123579988999999999997099 Q ss_pred CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCC Q ss_conf 99998122101797899841799898330427876663169999981790855689987078887976400157538898 Q T0613 167 DLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRD 246 (287) Q Consensus 167 DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d 246 (287) |++|++|||+|||++|++.|+.++||+||||||+|+|++|++||+.+|+|.+|||+|+|++++|+||||.|..++|.++| T Consensus 81 Dliv~~g~~~il~~~il~~~~~~~iN~HpslLP~~rG~~p~~~ai~~g~~~~G~Tih~v~~~iD~G~Ii~q~~~~I~~~d 160 (212) T 1jkx_A 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD 160 (212) T ss_dssp SEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTC T ss_pred CEEEEECHHHHCCHHHHHHHCCCEEECCCCHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCC T ss_conf 99998152455799998655589378475000137788859999987998668469986678757985899998659999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC Q ss_conf 9899999999988999999999885983898267489844 Q T0613 247 TPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286 (287) Q Consensus 247 t~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf~ 286 (287) |+++|.+|++.+|+.+|++++++++++|+.++++++..|. T Consensus 161 t~~~L~~k~~~~e~~ll~~~i~~i~~g~i~~~~~~~~~~~ 200 (212) T 1jkx_A 161 SEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDG 200 (212) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEETT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECC T ss_conf 9999999999999999999999998099788499889998 No 5 >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Probab=100.00 E-value=0 Score=353.93 Aligned_cols=197 Identities=26% Similarity=0.383 Sum_probs=184.1 Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 135634279998067877799999996689994389997288678-9999995699599828888887899999999998 Q T0613 84 DRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA 162 (287) Q Consensus 84 ~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~ 162 (287) +..+++|||||+||+||||++|+++++.|+++++|++||||++++ +...++.+++|+...+..... +.++.+.++ T Consensus 4 ~m~kkmkI~vl~SG~Gsnl~aii~~~~~~~~~~eI~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 79 (215) T 3kcq_A 4 SMKKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLD----IEHISTVLR 79 (215) T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBC----HHHHHHHHH T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEECCCCCCC----HHHHHHHHH T ss_conf 7899878999994987749999999776998839999995796537777877639987633786506----899999998 Q ss_pred HCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEEC Q ss_conf 44899999812210179789984179989833042787666316999998179085568998707888797640015753 Q T0613 163 QTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERI 242 (287) Q Consensus 163 ~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V 242 (287) ++++|+++++|||+|||++|++.|+.++||+||||||+|+|++|++||+.+|+|.+|||+|+|++++|+||||.|..++| T Consensus 80 ~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~tG~Tih~v~~~~D~G~Ii~q~~~~I 159 (215) T 3kcq_A 80 EHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPV 159 (215) T ss_dssp HTTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEEC T ss_pred HCCCCEEEEECCHHHCCHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEC T ss_conf 74999999924002267655102565641238743566688320778987798251658999706876898578999875 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEE Q ss_conf 889898999999999889999999998859838982674898 Q T0613 243 SHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVV 284 (287) Q Consensus 243 ~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvv 284 (287) .++||.++|.+|++++|+++|+++++.++++|+.+..++++- T Consensus 160 ~~~dt~~~L~~k~~~~e~~ll~~~i~~i~~~~i~~~~~~~~~ 201 (215) T 3kcq_A 160 LREDTAESLASRILAAEHVCYPKGVKLIAQDKIKLCDDGTVQ 201 (215) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECTTSCEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEE T ss_conf 999999999999999999999999999996994787799678 No 6 >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Probab=100.00 E-value=0 Score=346.17 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=188.2 Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-HHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCC Q ss_conf 4279998067877799999996689994389997288678-9999995699599828888-8878999999999984489 Q T0613 89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHT 166 (287) Q Consensus 89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~~~~a~~~~Ip~~~~~~~~-~~r~~~e~~l~~~l~~~~~ 166 (287) .|||||+||+||||++|+++++.|+++++|++|+||++++ +..+++..++|+..+.... ..+..++.++.+.++++++ T Consensus 1 ~ri~vl~SG~GSnl~aLl~~~~~~~~~~~I~~Visn~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 80 (209) T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 80 (209) T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 98999982784659999999766999978999996897557776777539861564342458988889999999986099 Q ss_pred CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCC Q ss_conf 99998122101797899841799898330427876663169999981790855689987078887976400157538898 Q T0613 167 DLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRD 246 (287) Q Consensus 167 DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d 246 (287) |++|++|||+|||++|++.|+.++||+||||||.|+|++|+.||+.+|.+.+|||+|+|++++|+||||.|..++|.++| T Consensus 81 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~~~~~~ai~~g~~~~G~Tih~v~~~iD~G~Ii~q~~~~I~~~d 160 (209) T 1meo_A 81 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGD 160 (209) T ss_dssp CEEEEESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC---CCCEEEEEEEECCTTC T ss_pred CEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCC T ss_conf 99999643410669999727688277378757654313789999986990677799996078868985789998759999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC Q ss_conf 9899999999988999999999885983898267489844 Q T0613 247 TPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286 (287) Q Consensus 247 t~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf~ 286 (287) |+++|.+|++++|+.+|+++++.+++||+.+..+..|.|+ T Consensus 161 t~~~L~~k~~~~~~~ll~~~l~~i~~g~i~~~~~~~I~~~ 200 (209) T 1meo_A 161 TVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV 200 (209) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSEEECTTSSEEEC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEE T ss_conf 9999999999999999999999998399698899879964 No 7 >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Probab=100.00 E-value=1.1e-32 Score=239.17 Aligned_cols=179 Identities=20% Similarity=0.237 Sum_probs=154.6 Q ss_pred CCCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCHHH-----------HHHHHHHCCCCEEECCCCCCCHHH Q ss_conf 56342799980678--77799999996689994389997288678-----------999999569959982888888789 Q T0613 86 ETRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHPRE-----------TFSGFDFGDIPFYHFPVNKDTRRQ 152 (287) Q Consensus 86 ~~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~~~-----------~~~~a~~~~Ip~~~~~~~~~~r~~ 152 (287) +..+||+.|.|..= .||++|+++ +.+|++|+++.++. ....|+++|||++..+ + .+ T Consensus 1 ~~~MrI~F~Gs~~fa~~~L~~L~~~------~~~i~~VvT~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~-~-~~--- 69 (314) T 1fmt_A 1 SESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPV-S-LR--- 69 (314) T ss_dssp CCCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCS-C-SC--- T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEECCC-C-CC--- T ss_conf 9961899986788999999999978------99679999599974557875888989999998599687467-6-89--- Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCC Q ss_conf 99999999984489999981221017978998417998983304278766631699999817908556899870788879 Q T0613 153 QEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEG 232 (287) Q Consensus 153 ~e~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~G 232 (287) +.+..+.++++++|++|+++|++||++++++.++.++||+||||||+|+|.+|+.||+.+|.+.+|+|+|++++++|+| T Consensus 70 -~~~~~~~l~~~~pDliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~i~~~~D~G 148 (314) T 1fmt_A 70 -PQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTG 148 (314) T ss_dssp -SHHHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCS T ss_pred -CHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCC T ss_conf -8999999986498999994601238999994277999998177466778989899999859974889879851688777 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 76400157538898989999999998899999999988598389 Q T0613 233 PIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 233 pII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) ||+.|..+++.++||..+|..|...+...++.++++.+.++... T Consensus 149 ~I~~q~~~~i~~~dt~~~l~~kl~~~~~~ll~~~l~~l~~g~~~ 192 (314) T 1fmt_A 149 DMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAK 192 (314) T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 75899987669999999999999999999999999999749955 No 8 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Probab=100.00 E-value=9.7e-32 Score=232.71 Aligned_cols=176 Identities=21% Similarity=0.244 Sum_probs=153.6 Q ss_pred CCEEEEEECC--CCCHHHHHHHHHCCCCCCEEEEEEECCHHH--------HHHHHHHCCCCEEECCCCCCCHHHHHHHHH Q ss_conf 4279998067--877799999996689994389997288678--------999999569959982888888789999999 Q T0613 89 RKVMLLVSQS--DHCLADILYRWRVGDLHMIPTAIVSNHPRE--------TFSGFDFGDIPFYHFPVNKDTRRQQEAAIT 158 (287) Q Consensus 89 ~riavlvSg~--g~~l~all~~~~~g~L~~ei~~Visn~~~~--------~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~ 158 (287) +||++|.+.. -.||++|+++ +.+|++|++..++. -...|+++|||++... + -+ +.++. T Consensus 1 Mkiv~~g~~~~~~~~l~~l~~~------~~~i~~Vvt~~~~~~~~~~~~~v~~~a~~~~i~~~~~~-~-~~----~~~~~ 68 (660) T 1z7e_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD-N-VN----HPLWV 68 (660) T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC--------CCHHHHHHHHTCCEECCS-C-TT----SHHHH T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEECCC-C-CC----CHHHH T ss_conf 9599991767899999999978------99789998389999776788879999998799688469-8-99----89999 Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEE Q ss_conf 99984489999981221017978998417998983304278766631699999817908556899870788879764001 Q T0613 159 ALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQD 238 (287) Q Consensus 159 ~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~ 238 (287) +.+++.++|++|.++|.+|||+++++.++.++||+||||||.|+|++|++||+.+|.+.+|+|+|++++++|+||||.|. T Consensus 69 ~~l~~~~~d~~~~~~~~~ii~~~~l~~~~~g~iN~H~slLP~~RG~~p~~wai~~g~~~~g~t~~~~~~~~D~G~I~~q~ 148 (660) T 1z7e_A 69 ERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQL 148 (660) T ss_dssp HHHHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECCSSTTTSCEEEEE T ss_pred HHHHHCCCCEEEEEHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEE T ss_conf 99983598999981023346999981488887998787685667807899999869974263899986234401045773 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 57538898989999999998899999999988598389 Q T0613 239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) .+++.++||..+|.++...+...++.+++..+.++... T Consensus 149 ~~~i~~~~t~~~l~~kl~~~~~~~l~~~l~~~~~~~~~ 186 (660) T 1z7e_A 149 RIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNIL 186 (660) T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 01354202344556778999999999999999759986 No 9 >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Probab=99.98 E-value=1.2e-31 Score=232.12 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=154.5 Q ss_pred CCCCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCHH-----HHHHHHHHCCCCEEECCCCCCCHHHHHHHH Q ss_conf 356342799980678--7779999999668999438999728867-----899999956995998288888878999999 Q T0613 85 RETRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHPR-----ETFSGFDFGDIPFYHFPVNKDTRRQQEAAI 157 (287) Q Consensus 85 ~~~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~~-----~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l 157 (287) -..++||+.|.|..- .+|++|+.+ +.+|++|++..+. .....|+.++||.+..+ +..++...+.++ T Consensus 19 ~~~~mrIvf~Gs~~f~~~~L~~L~~~------~~~i~~V~T~pdk~~~~~~v~~~A~~~~ipv~~~~-~~~~~~~~~~~~ 91 (329) T 2bw0_A 19 YFQSMKIAVIGQSLFGQEVYCHLRKE------GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYS-RWRAKGQALPDV 91 (329) T ss_dssp --CCCEEEEECCHHHHHHHHHHHHHT------TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECS-CCEETTEECHHH T ss_pred HHHCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCHHHHHHHHCCCCEECCC-CCCCCCCCCHHH T ss_conf 75432899988979999999999988------99789999289989898979999998399887643-368700148999 Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEE Q ss_conf 99998448999998122101797899841799898330427876663169999981790855689987078887976400 Q T0613 158 TALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQ 237 (287) Q Consensus 158 ~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q 237 (287) .+.+++.++|++|+++|++|||+++++.++.++||+||||||.|+|++|++||+.+|.+.+|+|+|++++++|+||||.| T Consensus 92 ~~~~~~~~~Dl~v~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~waI~~ge~~tGvTi~~~~~~~D~G~Ii~q 171 (329) T 2bw0_A 92 VAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQ 171 (329) T ss_dssp HHHHHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCSSSSCSCEEEE T ss_pred HHHHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHCCCCHHHCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCEEE T ss_conf 99998609973112332212331330001785876778725437886402001031014557345530233466651015 Q ss_pred EEEECCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHCCEEE Q ss_conf 157538898989999999-998899999999988598389 Q T0613 238 DVERISHRDTPADLVRKG-RDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 238 ~~v~V~~~dt~e~L~~r~-~~~E~~~l~~ai~~~~e~rv~ 276 (287) ..++|.++||..+|..|. ...-..++.+.++.+.++... T Consensus 172 ~~~~I~~~~t~~~L~~k~l~~~~~~l~~~~l~~i~~~~~~ 211 (329) T 2bw0_A 172 KECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAP 211 (329) T ss_dssp EEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC T ss_conf 3334673122346677665321000467777663048621 No 10 >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Probab=99.97 E-value=2.2e-30 Score=223.59 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=153.6 Q ss_pred CCEEEEEECC-CC-CHHHHHHHHHCCCCCCEEEEEEECCHHHH--------HHHHHHCCCCEEECCCCCCCHHHHHHHHH Q ss_conf 4279998067-87-77999999966899943899972886789--------99999569959982888888789999999 Q T0613 89 RKVMLLVSQS-DH-CLADILYRWRVGDLHMIPTAIVSNHPRET--------FSGFDFGDIPFYHFPVNKDTRRQQEAAIT 158 (287) Q Consensus 89 ~riavlvSg~-g~-~l~all~~~~~g~L~~ei~~Visn~~~~~--------~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~ 158 (287) +|+++|.+.. |. ||++|+++ +.||++|+++.+..+ ...|++++||++..+ +.+ +.++. T Consensus 1 mkiv~~~~~~~g~~~l~~l~~~------~~~i~~Vvt~~~~~~~~~~~~~~~~~a~~~~ip~~~~~--~~~----~~~~~ 68 (305) T 2bln_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD--NVN----HPLWV 68 (305) T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCS--CCC----SHHHH T ss_pred CEEEEEECCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEC--CCC----CHHHH T ss_conf 9599990678999999999978------99889998389999776786889999998799899303--013----24677 Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEE Q ss_conf 99984489999981221017978998417998983304278766631699999817908556899870788879764001 Q T0613 159 ALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQD 238 (287) Q Consensus 159 ~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~ 238 (287) +.+++.++|+++.++|++|+++++++.++.+++|+|||+||.|+|.+|+.||+.+|.+.+|+|+|++++++|+|||+.|. T Consensus 69 ~~l~~~~~Dl~i~~~~~~ii~~~il~~~~~~~iN~HpslLP~yRG~~p~~wai~~g~~~~g~tih~~~~~~D~G~Ii~q~ 148 (305) T 2bln_A 69 ERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQL 148 (305) T ss_dssp HHHHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEE T ss_pred HHHHHHCCCCCCCCCCCCHHHEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEC T ss_conf 77776343421011123101101102125578763554554324554011212144344221011301445568410143 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 57538898989999999998899999999988598389 Q T0613 239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) .+++.++||.++|..+........+.+.++.+.++... T Consensus 149 ~~~i~~~~t~~~l~~k~~~~~~~ll~~~l~~i~~~~~~ 186 (305) T 2bln_A 149 RIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNIL 186 (305) T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 32344410112210201356788632001232222223 No 11 >1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 Probab=99.88 E-value=3.4e-22 Score=168.50 Aligned_cols=162 Identities=13% Similarity=0.204 Sum_probs=117.0 Q ss_pred ECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-H-H-HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 067877799999996689994389997288678-9-9-999956995998288888878999999999984489999981 Q T0613 96 SQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-T-F-SGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLA 172 (287) Q Consensus 96 Sg~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~-~-~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLA 172 (287) -++|+++..++.+... ..+ +++|.++-. . . .........+.+..... +. ....+.++..+||+++++ T Consensus 15 ~~rgs~~~~~~~k~~~----~~i-i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~i~~~~~d~i~~~ 84 (260) T 1zgh_A 15 VPRGSQSTSLYKKAGL----MNI-IIATTKSWNIKNAQKFKKENESKYNTTIITN--KD---ELTFEKVKLINPEYILFP 84 (260) T ss_dssp ---------------C----EEE-EEECCSHHHHHHHHHHHHHTTTTEEEEEECS--GG---GCCHHHHHHHCCSEEEES T ss_pred CCCCHHHHHHHHHHHC----CCE-EEEECHHHHHHHHHHHHHHHCCCCEEEEECC--CC---HHHHHHHHHCCCCEEEEE T ss_conf 2362146667756502----558-9995527779999999997304531676418--15---888999985499999996 Q ss_pred CCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHH Q ss_conf 22101797899841799898330427876663169999981790855689987078887976400157538898989999 Q T0613 173 RYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLV 252 (287) Q Consensus 173 gym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~ 252 (287) ||++|+|.+++++| ++||+|||+||.|+|.+|++||+.+|.+.+|+|+|++++++|+||||.|..+++. +|.+++. T Consensus 85 ~~~~ii~~~il~~~--~~in~H~s~LP~~RG~~p~~w~i~~~~~~~g~t~~~~~~~iD~G~Ii~q~~i~i~--~~~~~l~ 160 (260) T 1zgh_A 85 HWSWIIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIF 160 (260) T ss_dssp SCCSCCCHHHHTTS--CEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCSSSSCSCEEEEEEEECC--SCHHHHH T ss_pred CHHHHCCHHHHHCC--CCEEECCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCC--CCHHHHH T ss_conf 73322389999429--9857878689867455640365652544332056674035553000210112344--4103567 Q ss_pred HHHHHHHHHHHHHHHHHHHCCE Q ss_conf 9999988999999999885983 Q T0613 253 RKGRDIERRVLSRALHYHLDDR 274 (287) Q Consensus 253 ~r~~~~E~~~l~~ai~~~~e~r 274 (287) .+. ...++...+....++. T Consensus 161 ~k~---~~~~~~~li~~i~~~~ 179 (260) T 1zgh_A 161 MRA---SKIIFNDMIPELLTKR 179 (260) T ss_dssp HHH---HHHHHHTHHHHHHHHC T ss_pred HHH---HHHHHHHHCCCCCCCC T ss_conf 789---9998655223232221 No 12 >1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 Probab=99.69 E-value=1.1e-16 Score=131.48 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=74.4 Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHC Q ss_conf 70899998499974699999999975984877111024565768999999628777898999999999998725201000 Q T0613 4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMR 83 (287) Q Consensus 4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i~ 83 (287) .+||||+.|||||||||+||++|+++|+||+|++|++ .++.|+|++.++.+. ..+.++|+++|.++++++|++|+++ T Consensus 4 mk~vitv~g~DrpGIva~vs~~L~~~g~NI~d~~q~~--~~~~f~~~~~v~~~~-~~~~~~l~~~l~~l~~~lgl~i~i~ 80 (91) T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV--LDEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVKINIQ 80 (91) T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEEEEEE T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEE--ECCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 3599999938988799999999998799399805189--379518999996699-9999999999999999829789998 Q ss_pred CCCC Q ss_conf 1356 Q T0613 84 DRET 87 (287) Q Consensus 84 ~~~~ 87 (287) +.+- T Consensus 81 ~e~i 84 (91) T 1zpv_A 81 SAAI 84 (91) T ss_dssp EGGG T ss_pred EHHH T ss_conf 0898 No 13 >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Probab=99.61 E-value=2.2e-14 Score=115.95 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=110.4 Q ss_pred CCCC-EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 9997-089999849997469999999997598487711102456576899999962877789899999999999872520 Q T0613 1 MPHH-QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG 79 (287) Q Consensus 1 M~~~-~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~ 79 (287) |+|+ .++||+.|||||||+++||++|+++|+||+|++|++ ..+.|.+.+.++.++. ..+.+++++..+++++++. T Consensus 1 ~~M~~~lvItv~g~DrpGl~a~l~~~l~~~g~nI~ds~~~~--~~~~~~~~~~v~~~~~--~~~~~~~~l~~l~~~~~~~ 76 (192) T 1u8s_A 1 MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGSPS--NITRVETTLPLLGQQHDLI 76 (192) T ss_dssp -CCCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEECHH--HHHHHHHHHHHHHHHHTCE T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEE--ECCCEEEEEEECCCHH--HHHHHHHHHHHHHHHHCCC T ss_conf 99741899999926988599999999998799599858899--8796299998505845--6678999999987650432 Q ss_pred HHHCCCC------CCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCC-----C Q ss_conf 1000135------6342799980678--7779999999668999438999728867899999956995998288-----8 Q T0613 80 WHMRDRE------TRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPV-----N 146 (287) Q Consensus 80 i~i~~~~------~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~-----~ 146 (287) +.+.... ...+..|-++|.. ..|..+-....+-.+ +|.-+-++..... +...+.|.+.... . T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~v~g~DrpGlL~~It~~la~~~i--nI~~i~~~t~~~~---~~~~g~~~f~~~~~~~vp~ 151 (192) T 1u8s_A 77 TMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQI--GMASLSAQTISKD---KLHSEQNQFHIAISARVDS 151 (192) T ss_dssp EEEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTC--CEEEEEEEEEC-----------CEEEEEEEEEECT T ss_pred EEEEECCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEEEEECCCC---CCCCCCCEEEEEEEEECCC T ss_conf 5789614445567751699999844706899999999997799--6668999953677---6667785799999997599 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 888789999999999844899999 Q T0613 147 KDTRRQQEAAITALIAQTHTDLVV 170 (287) Q Consensus 147 ~~~r~~~e~~l~~~l~~~~~Dliv 170 (287) ..+..+..+++.++.+++++|..+ T Consensus 152 ~~~~~~l~~~l~~L~~el~vdi~i 175 (192) T 1u8s_A 152 GCNLMQLQEEFDALCTALDVQGSL 175 (192) T ss_dssp TSCHHHHHHHHHHHHHHHTCEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCEEEE T ss_conf 999999999999999984957999 No 14 >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Probab=99.52 E-value=1.4e-13 Score=110.48 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=106.7 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 97089999849997469999999997598487711102456576899999962877789899999999999872520100 Q T0613 3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHM 82 (287) Q Consensus 3 ~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i 82 (287) +++|+||+.|||||||||+||++|+++|+||+|++|++ ..+.|.|.+.++.+.. ....+++++....+.+.+.+.. T Consensus 3 ~~~~vitv~g~DrpGiva~v~~~L~~~g~nI~ds~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~l~~~~~~l~~~~~~ 78 (195) T 2nyi_A 3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC--LGGDFAMIVLVSLNAK--DGKLIQSALESALPGFQISTRR 78 (195) T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEESSS--SSHHHHHHHHHHSTTCEEEEEE T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEE--ECCCEEEEEEECCCCH--HHHHHHHHHHHHHHCCCEEEEE T ss_conf 33899999946988799999999998799999988189--7797499985113421--5779999999987156347752 Q ss_pred CCC----CCCC-----CEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEC----CCCCCC Q ss_conf 013----5634-----279998067877799999996689994389997288678999999569959982----888888 Q T0613 83 RDR----ETRR-----KVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHF----PVNKDT 149 (287) Q Consensus 83 ~~~----~~~~-----riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~----~~~~~~ 149 (287) ... ...+ .+-+...-+...|..+-....+..+| |.-+-++... +...|.|.++. +..... T Consensus 79 ~~~~~~~~~~~~~~~~~v~v~g~DrpGll~~it~~La~~gin--I~~l~t~~~~-----~~~~g~~lF~~~~~v~vp~~~ 151 (195) T 2nyi_A 79 ASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGAN--IVELETETLP-----APFAGFTLFRMGSRVAFPFPL 151 (195) T ss_dssp CCCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCE--EEEEEEEEEE-----CSSTTCEEEEEEEEEEEEGGG T ss_pred ECCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEEEEEEC-----CCCCCCCEEEEEEEEECCCCC T ss_conf 013445566888438999998507777999999998764953--0222344434-----887787449999999679785 Q ss_pred HHHHHHHHHHHHHHCCCCEEE Q ss_conf 789999999999844899999 Q T0613 150 RRQQEAAITALIAQTHTDLVV 170 (287) Q Consensus 150 r~~~e~~l~~~l~~~~~Dliv 170 (287) ..+.++++..+-+++++|+-+ T Consensus 152 ~~~l~~~L~~l~~el~vDi~v 172 (195) T 2nyi_A 152 YQEVVTALSRVEEEFGVDIDL 172 (195) T ss_dssp HHHHHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHHHHHHCCEEEE T ss_conf 799999999999997847999 No 15 >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Probab=99.15 E-value=2.7e-10 Score=88.50 Aligned_cols=86 Identities=9% Similarity=0.164 Sum_probs=71.9 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEC------CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 970899998499974699999999975984877111024------56576899999962877789899999999999872 Q T0613 3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND------TESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKF 76 (287) Q Consensus 3 ~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d------~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~ 76 (287) ..+|++++.|+||+||+++||++|+++|+||.+++..+. .....|.|.+.++.+. ..+.++|+++|.++++++ T Consensus 91 ~~~~~v~v~g~DrpGlL~~It~~la~~~inI~~i~~~t~~~~~~~~g~~~f~~~~~~~vp~-~~~~~~l~~~l~~L~~el 169 (192) T 1u8s_A 91 AYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCTAL 169 (192) T ss_dssp SEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHHHHH T ss_conf 5169999984470689999999999779966689999536776667785799999997599-999999999999999984 Q ss_pred CCCHHHCCCCCCC Q ss_conf 5201000135634 Q T0613 77 TMGWHMRDRETRR 89 (287) Q Consensus 77 ~~~i~i~~~~~~~ 89 (287) +++|++.+-..++ T Consensus 170 ~vdi~i~~~~~~~ 182 (192) T 1u8s_A 170 DVQGSLNFIKNSQ 182 (192) T ss_dssp TCEEEEEEEEC-- T ss_pred CCEEEEEECCCCC T ss_conf 9579999765663 No 16 >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Probab=99.02 E-value=1e-09 Score=84.64 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=68.6 Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEC--CC--CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 70899998499974699999999975984877111024--56--576899999962877789899999999999872520 Q T0613 4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND--TE--SGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG 79 (287) Q Consensus 4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d--~~--~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~ 79 (287) ..|++++.|+|++||++.||++|+++|+||.+++.... .. ...|.|.+.+..+.. ..++++++|.+++++++++ T Consensus 92 ~~~~v~v~g~DrpGll~~it~~La~~ginI~~l~t~~~~~~~~g~~lF~~~~~v~vp~~--~~~~l~~~L~~l~~el~vD 169 (195) T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFP--LYQEVVTALSRVEEEFGVD 169 (195) T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGG--GHHHHHHHHHHHHHHHTCE T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCC--CHHHHHHHHHHHHHHHCCE T ss_conf 38999998507777999999998764953022234443488778744999999967978--5799999999999997847 Q ss_pred HHHCCCCC Q ss_conf 10001356 Q T0613 80 WHMRDRET 87 (287) Q Consensus 80 i~i~~~~~ 87 (287) |.++...+ T Consensus 170 i~v~~~~~ 177 (195) T 2nyi_A 170 IDLEEVVE 177 (195) T ss_dssp EEEEECC- T ss_pred EEEEECCC T ss_conf 99998787 No 17 >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Probab=98.03 E-value=2.2e-05 Score=55.48 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=55.3 Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 99970899998499974699999999975984877111024565768999999628777898999999999998725 Q T0613 1 MPHHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT 77 (287) Q Consensus 1 M~~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~ 77 (287) |+.=..-|.+.|.||||+.+.||+.+++.|+||.++++. ..++.+.|.+.++.. +.+.|...+..+.+--+ T Consensus 1 ~t~f~~~L~I~~~Dr~GlL~dIt~~is~~~inI~~i~~~--~~~~~~~~~i~veV~----d~~~L~~li~~L~~i~~ 71 (88) T 2ko1_A 1 MTDFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLN--AKDGIFTCNLMIFVK----NTDKLTTLMDKLRKVQG 71 (88) T ss_dssp CCCEEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEE--ECSSEEEEEEEEEES----SHHHHHHHHHHHTTCTT T ss_pred CCEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEE--ECCCEEEEEEEEEEC----CHHHHHHHHHHHHCCCC T ss_conf 925799999999778788999999998879829999998--349989999999999----99999999999877999 No 18 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Probab=96.98 E-value=0.0021 Score=42.16 Aligned_cols=147 Identities=11% Similarity=0.145 Sum_probs=74.0 Q ss_pred CCCCEEEEEEECCH--HHHHHHHHHCCCCEEECCCCCCCHHHHH------HHHHHHHHHCCCCEEEEEC-----CCCCCC Q ss_conf 99943899972886--7899999956995998288888878999------9999999844899999812-----210179 Q T0613 113 DLHMIPTAIVSNHP--RETFSGFDFGDIPFYHFPVNKDTRRQQE------AAITALIAQTHTDLVVLAR-----YMQILS 179 (287) Q Consensus 113 ~L~~ei~~Visn~~--~~~~~~a~~~~Ip~~~~~~~~~~r~~~e------~~l~~~l~~~~~DlivLAg-----ym~iL~ 179 (287) +|...-.+++.-=. ...+.++..+|....+.+... .....+ ..+.+++++ .|+|+++= --.++. T Consensus 139 ~l~gktlGIiG~G~IG~~va~~~~~fgm~v~~~d~~~-~~~~~~~~~~~~~~l~ell~~--sD~v~lh~Plt~~T~~lin 215 (529) T 1ygy_A 139 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGIELLSLDDLLAR--ADFISVHLPKTPETAGLID 215 (529) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTCEECCHHHHHHH--CSEEEECCCCSTTTTTCBC T ss_pred CCCEEEEEEECCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCCCCCEEECCHHHHHHC--CCEEEEECCCCCCCCCEEC T ss_conf 0011045474357751121110236531001036532-222111354121257787401--9999992688663027097 Q ss_pred HHHHHHCCC--CEEEECCCCCCCCCCC----CHHHHHHHCCCEEEEEEEEEEECC-CCCCCEEEEEEEECC---CCCCHH Q ss_conf 789984179--9898330427876663----169999981790855689987078-887976400157538---898989 Q T0613 180 DEMSARLAG--RCINIHHSFLPGFKGA----KPYHQAFDRGVKLIGATAHYVTSA-LDEGPIIDQDVERIS---HRDTPA 249 (287) Q Consensus 180 ~~~~~~~~~--riiNiHpSlLP~f~G~----~~~~~a~~~Gvk~~G~TvH~V~~~-lD~GpII~Q~~v~V~---~~dt~e 249 (287) .++++..+. .+||+- +|. ...-+|++.| ++.||-.--..+| +-..|...-.-|-+. .+.|.| T Consensus 216 ~~~l~~mk~ga~lIN~a-------RG~iVde~aL~~aL~~g-~i~gAalDV~~~EP~~~~pL~~~~nVi~TPHia~~T~e 287 (529) T 1ygy_A 216 KEALAKTKPGVIIVNAA-------RGGLVDEAALADAITGG-HVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE 287 (529) T ss_dssp HHHHTTSCTTEEEEECS-------CTTSBCHHHHHHHHHTS-SEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHH T ss_pred HHHHHCCCCCCEEEECC-------CCCEECHHHHHHHHHCC-CCEEEEEECCCCCCCCCCHHHCCCCEEECCCCCCCCHH T ss_conf 99981789998788425-------76567689999898649-85068972336889999713338888963565543289 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 99999999889999999998859838 Q T0613 250 DLVRKGRDIERRVLSRALHYHLDDRV 275 (287) Q Consensus 250 ~L~~r~~~~E~~~l~~ai~~~~e~rv 275 (287) ...+... ...+.+..+++|+. T Consensus 288 a~~~~~~-----~~~~ni~~~l~g~~ 308 (529) T 1ygy_A 288 AQDRAGT-----DVAESVRLALAGEF 308 (529) T ss_dssp HHHHHHH-----HHHHHHHHHHTTCC T ss_pred HHHHHHH-----HHHHHHHHHHCCCC T ss_conf 9999999-----99988999976998 No 19 >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Probab=96.97 E-value=0.001 Score=44.29 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=60.1 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEC---CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 899998499974699999999975984877111024---56576899999962877789899999999999872520100 Q T0613 6 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND---TESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHM 82 (287) Q Consensus 6 ~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d---~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i 82 (287) .-|++.+.+++|+..++++.++++|+||+-.+||.- ...|.=+..|+++. .+.+.|-+++..+..-. ++.+ T Consensus 5 ~~l~i~a~nk~GvL~~i~giiae~~~NI~ytq~f~~~~~~~~g~~~iY~Eie~----~d~~~l~~~l~~~~~V~--~V~~ 78 (223) T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG----GDFEKILERVKTFDYII--EIEE 78 (223) T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS----SCHHHHHHHHHTCTTEE--EEEE T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEECC----CCHHHHHHHHHCCCCEE--EEEE T ss_conf 35899975876559998889986389759998773036677882689999828----99899999986699658--9996 Q ss_pred CCCCCC---CCEEEEEEC Q ss_conf 013563---427999806 Q T0613 83 RDRETR---RKVMLLVSQ 97 (287) Q Consensus 83 ~~~~~~---~riavlvSg 97 (287) +++-.+ ||+-|+--| T Consensus 79 h~~~~~IfGKRVIIiGGG 96 (223) T 1y7p_A 79 EESFERVFGKRVIILGGG 96 (223) T ss_dssp ECCHHHHTCEEEEEEECH T ss_pred ECCHHHHCCCEEEEECCC T ss_conf 166788548479999882 No 20 >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6 d.58.18.6 Probab=96.82 E-value=0.014 Score=36.67 Aligned_cols=104 Identities=10% Similarity=0.123 Sum_probs=60.5 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-HH Q ss_conf 97089999849997469999999997598487711102456576899999962877789899999999999872520-10 Q T0613 3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG-WH 81 (287) Q Consensus 3 ~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~-i~ 81 (287) +++++|++.-.|+||+.++||+.++.+|.||..++--.+...+.=-|.+.++.++ -..+++.+-+.++-+=..+. .. T Consensus 27 ~~k~~isvlVeN~~GvL~RVsglFsrRg~NIeSL~V~~te~~~iSRmTiv~~~~~--~~ieQI~kQL~KLIdVi~V~dlt 104 (193) T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKLVEVVKVTPID 104 (193) T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTSTTEEEEEECC T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCH--HHHHHHHHHHHCCCCEEEEEEEE T ss_conf 0089999999778789999999986178563678852466888079999996888--89999999997478859999830 Q ss_pred HCCCCCCCCEEEEEEC-CCCCHHHHHHH Q ss_conf 0013563427999806-78777999999 Q T0613 82 MRDRETRRKVMLLVSQ-SDHCLADILYR 108 (287) Q Consensus 82 i~~~~~~~riavlvSg-~g~~l~all~~ 108 (287) -.+...+.+..+++.- ...+..+++.- T Consensus 105 ~~~~~~~E~~Likvk~~~~~~~~eI~~i 132 (193) T 2fgc_A 105 PLPENRVEREMALIKVRFDEDKQEIFQL 132 (193) T ss_dssp SSGGGEEEEEEEEEEEECSSCHHHHHHH T ss_pred CCCCHHHHHHHHEEEECCCCCHHHHHHH T ss_conf 3451378876520753588369999999 No 21 >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Probab=96.24 E-value=0.0044 Score=40.00 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=46.3 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 9708999984999746999999999759848771110245657689999996287778989999999999 Q T0613 3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVI 72 (287) Q Consensus 3 ~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~l 72 (287) |.+.+|++.-.++||..++||+.++.+|.||..++---+...+.=-|.+.+..++ -..+++.+-+.++ T Consensus 1 M~k~~isvlveN~pGvL~Rv~glFsrRg~NI~SL~v~~te~~~~SR~Tiv~~g~~--~~i~qi~kQL~Kl 68 (164) T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE--KVLEQIEKQLHKL 68 (164) T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH--HHHHHHHHHHHHS T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCH--HHHHHHHHHHHCC T ss_conf 9559999999878679999999997168663689961346897579999997999--9999999998268 No 22 >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Probab=96.10 E-value=0.023 Score=35.17 Aligned_cols=49 Identities=4% Similarity=-0.004 Sum_probs=21.8 Q ss_pred CCEEEEEECCCCCHHHHH-HHHHCCCCCCEEEEEEECCHHH---H--H-HHHHHCCCCEEE Q ss_conf 427999806787779999-9996689994389997288678---9--9-999956995998 Q T0613 89 RKVMLLVSQSDHCLADIL-YRWRVGDLHMIPTAIVSNHPRE---T--F-SGFDFGDIPFYH 142 (287) Q Consensus 89 ~riavlvSg~g~~l~all-~~~~~g~L~~ei~~Visn~~~~---~--~-~~a~~~~Ip~~~ 142 (287) ..+.|=+.|....-.+++ .+.+.|. .+|-+|+.-. + + ..|+++|+.+.+ T Consensus 79 idivVE~~gg~e~a~~~~~~aL~~G~-----~VVTANKa~~a~~~~eL~~~A~~~g~~~~y 134 (444) T 3mtj_A 79 IDIVVELIGGLEPARELVMQAIANGK-----HVVTANKHLVAKYGNEIFAAAQAKGVMVTF 134 (444) T ss_dssp CCEEEECCCSSTTHHHHHHHHHHTTC-----EEEECCHHHHHHHHHHHHHHHHHHTCCEEC T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCC-----CEEECCHHHHHHHHHHHHHHHHHHCCEEEE T ss_conf 99999918996479999999997699-----477453467888899999999980998985 No 23 >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Probab=95.45 E-value=0.062 Score=32.28 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=57.4 Q ss_pred CEEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 708999984-9997469999999997598487711102456576899999962877789899999999999872520100 Q T0613 4 HQYVLTLSC-PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHM 82 (287) Q Consensus 4 ~~~VLTv~g-pDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i 82 (287) +...+|+.| ||+||+.++|.+.|+++|+||.=++|..+. .+..+.-+.+..+.. +.......+.++..+++-.+.+ T Consensus 15 ~~a~Iti~g~~~~~g~~a~iF~~la~~~I~VdmI~q~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 91 (167) T 2dt9_A 15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPG-HDPSRQQMAFTVKKD--FAQEALEALEPVLAEIGGEAIL 91 (167) T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCC-SCTTEEEEEEEEEGG--GHHHHHHHHHHHHHHHCCEEEE T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCEEECCCHHH--HHHHHHHHHHHHHHHCCCEEEE T ss_conf 9899999168998657999999999729980135531023-456421121141267--8888888776655420532698 Q ss_pred CCCCCCCCEEEEEECCCCC Q ss_conf 0135634279998067877 Q T0613 83 RDRETRRKVMLLVSQSDHC 101 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~ 101 (287) . ...-++.+-.+|-.++ T Consensus 92 ~--~~~akVSvVG~gm~~~ 108 (167) T 2dt9_A 92 R--PDIAKVSIVGVGLAST 108 (167) T ss_dssp E--CSEEEEEEEESSGGGS T ss_pred E--CCCEEEEEECCCCCCC T ss_conf 4--7822999826773569 No 24 >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11 Probab=95.43 E-value=0.033 Score=34.11 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=34.1 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEE Q ss_conf 99998499974699999999975984877111024565768 Q T0613 7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHF 47 (287) Q Consensus 7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~F 47 (287) -|++--+|+||..++|++.|+++|+||.-++|..+...+.. T Consensus 8 qisvfv~n~pG~La~v~~~la~~gInI~~is~~~t~~~~i~ 48 (144) T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGIL 48 (144) T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEE T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEE T ss_conf 99999479742999999999986972899994346787566 No 25 >2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Probab=95.42 E-value=0.033 Score=34.10 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=47.5 Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 70899998499974699999999975984877111024565768999999628777898999999999998725 Q T0613 4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT 77 (287) Q Consensus 4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~ 77 (287) .+.+|++.-.|+||..++||+.++.+|.||..++--.+...+.=-|.+.++.++ ..+..-..++.+-.. T Consensus 3 Mk~~isvlveN~pGvL~RvsglFsrRg~NI~SL~v~~te~~~iSR~Tiv~~~~~-----~~i~qi~kQL~KLid 71 (165) T 2pc6_A 3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD-----EIVEQITKQLNKLIE 71 (165) T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH-----HHHHHHHHHHHHSTT T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCH-----HHHHHHHHHHHCCCC T ss_conf 449999999878569999999986267445788873247998079999997888-----999999999856866 No 26 >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Probab=94.09 E-value=0.31 Score=27.59 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=28.7 Q ss_pred CCCCHHHHHHHCCCEEEEEEE-EEEECC-------CCCCCEEEEEEEECCCCC-CHHHHHHHHHH Q ss_conf 663169999981790855689-987078-------887976400157538898-98999999999 Q T0613 202 KGAKPYHQAFDRGVKLIGATA-HYVTSA-------LDEGPIIDQDVERISHRD-TPADLVRKGRD 257 (287) Q Consensus 202 ~G~~~~~~a~~~Gvk~~G~Tv-H~V~~~-------lD~GpII~Q~~v~V~~~d-t~e~L~~r~~~ 257 (287) .|.+....|+..|+...+..+ ....++ -|.| ..+-+.++| |+++|.+.++. T Consensus 262 ~G~~ti~Eal~~g~P~i~~~~~~~~~dq~~na~~l~~~G-----~g~~v~~~~~~~~~la~al~~ 321 (364) T 1f0k_A 262 SGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-----AAKIIEQPQLSVDAVANTLAG 321 (364) T ss_dssp CCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-----SEEECCGGGCCHHHHHHHHHT T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCCCCCHHHHHHHHHH T ss_conf 784699999995799899817888345999999999789-----989808654999999999985 No 27 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Probab=92.56 E-value=0.29 Score=27.71 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=42.0 Q ss_pred CCCCEEEEEEECCHH--HHHHHHHHCCCCEEECCCCC--CC-HHHHHHHHHHHHHHCCCCEEEEECC-----CCCCCHHH Q ss_conf 999438999728867--89999995699599828888--88-7899999999998448999998122-----10179789 Q T0613 113 DLHMIPTAIVSNHPR--ETFSGFDFGDIPFYHFPVNK--DT-RRQQEAAITALIAQTHTDLVVLARY-----MQILSDEM 182 (287) Q Consensus 113 ~L~~ei~~Visn~~~--~~~~~a~~~~Ip~~~~~~~~--~~-r~~~e~~l~~~l~~~~~DlivLAgy-----m~iL~~~~ 182 (287) +|.....+++.--.- ..+.++..+|....+..... .. ....-..+.++++ +.|+|++.== -.++..++ T Consensus 142 el~gktlgIiG~G~IG~~va~~~~~~gm~V~~~d~~~~~~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~lin~~~ 219 (404) T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN--MSDVVSLHVPENPSTKNMMGAKE 219 (404) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHH--HCSEEEECCCSSTTTTTCBCHHH T ss_pred CCCCEEEEEECCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCEECCHHHHHHH--HCCEEEECCCCCCCCCCHHHHHH T ss_conf 4430368995033310333310034573686324446531135311030555452--28799972788856635158999 Q ss_pred HHHCCCC--EEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEE Q ss_conf 9841799--8983304278766631699999817908556899 Q T0613 183 SARLAGR--CINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAH 223 (287) Q Consensus 183 ~~~~~~r--iiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH 223 (287) +...+.. +||+--+=+ -=-...-+|++.| ++.|+-.- T Consensus 220 l~~mK~gailIN~aRG~i---Vde~aL~~aL~~g-~i~gaalD 258 (404) T 1sc6_A 220 ISLMKPGSLLINASRGTV---VDIPALADALASK-HLAGAAID 258 (404) T ss_dssp HHHSCTTEEEEECSCSSS---BCHHHHHHHHHTT-SEEEEEEE T ss_pred HHHCCCCCEEEECCCCCE---ECHHHHHHHHHCC-CCCEEEEE T ss_conf 974699869994377765---6589999997517-66639997 No 28 >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} Probab=92.42 E-value=0.33 Score=27.39 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=54.0 Q ss_pred CCEEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHH Q ss_conf 9708999984-999746999999999759848771110245657689999996287778989999999999987252010 Q T0613 3 HHQYVLTLSC-PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWH 81 (287) Q Consensus 3 ~~~~VLTv~g-pDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~ 81 (287) .+...+|+.| ||++|+.|++.+.|+++|+||.=+.|-.+. .+.+.+.+.+..+. .+.......+.++..+.+.. . T Consensus 13 ~~~a~itv~~l~~~~g~~a~iF~~la~~~InVdmI~qs~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~ 88 (178) T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSS-VEDGTTDITFTCPR--SDGRRAMEILKKLQVQGNWT-N 88 (178) T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCC-TTTCEEEEEEEEEH--HHHHHHHHHHHTTTTTTTCS-E T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCC-CCCCEEEEECCCCH--HHHHHHHHHHCCCCCCCCCC-C T ss_conf 99899999058998608999999999844362231033321-12311255304404--56666676520111334432-1 Q ss_pred HCCCCCCCCEEEEEECCCCCH Q ss_conf 001356342799980678777 Q T0613 82 MRDRETRRKVMLLVSQSDHCL 102 (287) Q Consensus 82 i~~~~~~~riavlvSg~g~~l 102 (287) +......-++++..+|-.++. T Consensus 89 v~~~~~~a~VsvVG~gm~~~~ 109 (178) T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHP 109 (178) T ss_dssp EEEESCEEEEEEEEECCTTCH T ss_pred EEEECCCEEEEEEECCCCCCC T ss_conf 687156126876504645678 No 29 >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11 Probab=91.98 E-value=0.28 Score=27.89 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=29.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECC Q ss_conf 999984999746999999999759848771110245 Q T0613 7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDT 42 (287) Q Consensus 7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~ 42 (287) ++-+.-+|+||+.+++++.|+++|+||..+.|+... T Consensus 74 vvg~~m~~~~G~la~i~~~L~~~gINI~~i~~~~s~ 109 (144) T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANN 109 (144) T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEET T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 894157899539999999998779886984411587 No 30 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Probab=91.91 E-value=0.4 Score=26.80 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=64.9 Q ss_pred CCCCEEEEEEECCH--HHHHHHHHHCCCCEEEC-CCCCCCHH--HHHHHHHHHHHHCCCCEEEEE-----CCCCCCCHHH Q ss_conf 99943899972886--78999999569959982-88888878--999999999984489999981-----2210179789 Q T0613 113 DLHMIPTAIVSNHP--RETFSGFDFGDIPFYHF-PVNKDTRR--QQEAAITALIAQTHTDLVVLA-----RYMQILSDEM 182 (287) Q Consensus 113 ~L~~ei~~Visn~~--~~~~~~a~~~~Ip~~~~-~~~~~~r~--~~e~~l~~~l~~~~~DlivLA-----gym~iL~~~~ 182 (287) ++.....+++.--. .....++..++...... +....... ..-..+-++++ +.|+|+++ .--.++..++ T Consensus 153 ~l~~k~lgiiG~G~iG~~va~~~~~~g~~v~~~~~~~~~~~~~~~~~~~L~ell~--~sDiIslh~Plt~~T~~lin~~~ 230 (416) T 3k5p_A 153 EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLK--TSDVVSLHVPSSKSTSKLITEAK 230 (416) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHH--HCSEEEECCCC-----CCBCHHH T ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCHHHHHC--CCCEEEEEECCCCCCCCHHHHHH T ss_conf 0111002221001245311111002220244421344521010354035666432--07788762021112334034999 Q ss_pred HHHCCCC--EEEECCCCCCCCCCC----CHHHHHHHCCCEEEEEEEEEEECC-CCCC-----CEEEEEEE---ECCCCCC Q ss_conf 9841799--898330427876663----169999981790855689987078-8879-----76400157---5388989 Q T0613 183 SARLAGR--CINIHHSFLPGFKGA----KPYHQAFDRGVKLIGATAHYVTSA-LDEG-----PIIDQDVE---RISHRDT 247 (287) Q Consensus 183 ~~~~~~r--iiNiHpSlLP~f~G~----~~~~~a~~~Gvk~~G~TvH~V~~~-lD~G-----pII~Q~~v---~V~~~dt 247 (287) ++..+.. +||+- +|. ...-+|++.| ++.|+-.-...+| +..+ |.....-| |=....| T Consensus 231 l~~mK~ga~lIN~a-------RG~iVde~aL~~AL~~g-~i~gaalDVf~~EP~~~~~~~~~pl~~~~nVi~TPHig~~T 302 (416) T 3k5p_A 231 LRKMKKGAFLINNA-------RGSDVDLEALAKVLQEG-HLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST 302 (416) T ss_dssp HHHSCTTEEEEECS-------CTTSBCHHHHHHHHHTT-SEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCC T ss_pred HHHCCCCCEEEECC-------CCCEECHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCHHCCCCEEECCCCCCCC T ss_conf 95279998787237-------65520299999999729-73017850577788864333357011489878615344278 Q ss_pred HHHHHHHH Q ss_conf 89999999 Q T0613 248 PADLVRKG 255 (287) Q Consensus 248 ~e~L~~r~ 255 (287) .|...+.. T Consensus 303 ~ea~~~~~ 310 (416) T 3k5p_A 303 EEAQERIG 310 (416) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 31 >3luy_A Probable chorismate mutase; structural genomics, APC38059, 3- phenylpyruvate, PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Probab=91.41 E-value=0.78 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.052 Sum_probs=8.4 Q ss_pred HHHHHHHHCCCCEEEEECCC Q ss_conf 99999984489999981221 Q T0613 156 AITALIAQTHTDLVVLARYM 175 (287) Q Consensus 156 ~l~~~l~~~~~DlivLAgym 175 (287) +.++.|+++...+-+|--|= T Consensus 268 ~al~~L~~~~~~~kvLGSYP 287 (329) T 3luy_A 268 DALVEIAEHGDWAKTLAVYP 287 (329) T ss_dssp HHHHHHHHTTCEEEEEEEEE T ss_pred HHHHHHHHHCCEEEEEEECC T ss_conf 99999998569079975031 No 32 >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, PSI-2, protein structure initiative; 2.75A {Neisseria meningitidis MC58} Probab=90.40 E-value=0.62 Score=25.52 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=50.9 Q ss_pred CEEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 708999984-9997469999999997598487711102456576899999962877789899999999999872520100 Q T0613 4 HQYVLTLSC-PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHM 82 (287) Q Consensus 4 ~~~VLTv~g-pDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i 82 (287) +...+|+.| ||++|+.+++.+.|+++|+||.-+.|... ..+. +.+.|..+.. +.+.....+..+-++.+ ..++ T Consensus 24 n~~~vti~~~~~~~g~~a~iF~~la~~~I~vDmI~q~~~-~~~~--~~isf~~~~~--d~~~~~~~~~~~~~~~~-~~~v 97 (167) T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVG-SEGT--TDFSFTVPRG--DYKQTLEILSERQDSIG-AASI 97 (167) T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CE--EEEEEEECGG--GHHHHHHHHHHSSTTTT-CSEE T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECC-CCCE--EEEEEEEEHH--HHHHHHHHHHHHHHHCC-CEEE T ss_conf 979999936899743799999999983997899985246-7965--8999985278--87779999986553148-3179 Q ss_pred CCCCCCCCEEEEEEC Q ss_conf 013563427999806 Q T0613 83 RDRETRRKVMLLVSQ 97 (287) Q Consensus 83 ~~~~~~~riavlvSg 97 (287) ......-+++|-..| T Consensus 98 ~~~~~~akvSvVG~g 112 (167) T 2re1_A 98 DGDDTVCKVSAVGLG 112 (167) T ss_dssp EEESSEEEEEEECSS T ss_pred EECCCEEEEEEECCC T ss_conf 971888899998265 No 33 >3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A* Probab=88.72 E-value=1.2 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=8.1 Q ss_pred CHHHHHHHHHHHCCCCEEECCC Q ss_conf 4699999999975984877111 Q T0613 17 GIVSAVSTFLFENGQNILDAQQ 38 (287) Q Consensus 17 GIVA~Vt~~Lae~g~NI~disQ 38 (287) |+.+++...++++++||.-++| T Consensus 333 g~~a~If~~l~~~~inV~~i~~ 354 (473) T 3c1m_A 333 GTAARIFKALGEEEVNVILISQ 354 (473) T ss_dssp HHHHHHHHHHHHTTCCEEEEEE T ss_pred CHHHHHHHHHHHCCCEEEEEEE T ss_conf 4899998888734855999983 No 34 >2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* Probab=85.51 E-value=1.3 Score=23.44 Aligned_cols=88 Identities=7% Similarity=-0.010 Sum_probs=50.3 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) .++.+++.. . ..+++.+.+.+.. +. +..|-++|.+..+- |.. .+-++ -.++.++.++.+ ..++-||++ T Consensus 56 ~~~~~ll~~---~--~iD~v~I~tp~~~h~~~~~~al~~gk~v~~EKP~~-~~~~e-~~~l~~~a~~~~--~~~~v~~~~ 126 (334) T 2o4u_X 56 GSYEELAKD---P--NVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMG-VNAAE-VREMVTEARSRG--LFLMEAIWT 126 (334) T ss_dssp SSHHHHHTC---T--TCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSS-SSHHH-HHHHHHHHHHHT--CCEEECCGG T ss_pred CCHHHHHCC---C--CCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCC-CCCCC-CHHHHHHHHHCC--CCCEEEEEC T ss_conf 899999569---9--99899996664220899999998699262379840-01212-024444555444--542122210 Q ss_pred CCCHHHHHH-------CCCCEEEECCC Q ss_conf 179789984-------17998983304 Q T0613 177 ILSDEMSAR-------LAGRCINIHHS 196 (287) Q Consensus 177 iL~~~~~~~-------~~~riiNiHpS 196 (287) ...|.+... .-|++.+++-. T Consensus 127 r~~p~~~~~k~~i~~g~~G~i~~~~~~ 153 (334) T 2o4u_X 127 RFFPASEALRSVLAQGTLGDLRVARAE 153 (334) T ss_dssp GGSHHHHHHHHHHHHTTTCSEEEEEEE T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 168078999999753885746999999 No 35 >2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A Probab=84.93 E-value=2 Score=22.06 Aligned_cols=139 Identities=15% Similarity=0.208 Sum_probs=78.4 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE---CCHH----------HHHHHHHHCCCCEEECCCCCCCHHHHH Q ss_conf 342799980678777999999966899943899972---8867----------899999956995998288888878999 Q T0613 88 RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS---NHPR----------ETFSGFDFGDIPFYHFPVNKDTRRQQE 154 (287) Q Consensus 88 ~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Vis---n~~~----------~~~~~a~~~~Ip~~~~~~~~~~r~~~e 154 (287) ..|++|+-||.=-+..|+..+.+.| -+|+++++ ...+ .....|+..|||.+.+..... .+..- T Consensus 4 ~~~V~vl~SGGKDS~lAl~~a~~~G---~~V~~L~t~~~~~~ds~~~h~~~~~l~~~qA~algiPl~~~~~~~~-~e~~~ 79 (227) T 2d13_A 4 LADVAVLYSGGKDSNYALYWALKSG---LRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGE-KEKEV 79 (227) T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--C-TTSHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECCCC-CCHHH T ss_conf 2419999168699999999999859---8279999987288995605477899999999875999336624687-22899 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCC--CEEEECCCCCCCCCCCCH---HHHHHHCCCEEEEEEEEEEECCC Q ss_conf 9999999844899999812210179789984179--989833042787666316---99999817908556899870788 Q T0613 155 AAITALIAQTHTDLVVLARYMQILSDEMSARLAG--RCINIHHSFLPGFKGAKP---YHQAFDRGVKLIGATAHYVTSAL 229 (287) Q Consensus 155 ~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~--riiNiHpSlLP~f~G~~~---~~~a~~~Gvk~~G~TvH~V~~~l 229 (287) ..+.+.+++++++-|| |.-|.+..--.+-++ +-+++-+ +.|-.. .+. .++-+++|.+..=++|- ..++ T Consensus 80 ~~l~~~l~~~~v~~vv---~Gdi~~~~~~~r~e~~c~~~gl~~-~~PLW~-~d~~~ll~e~i~~G~~aiiv~v~--~~gL 152 (227) T 2d13_A 80 EDLKNVLEGLKVDGIV---AGALASRYQKERIENVARELGLKV-YTPAWE-KDPYQYMLEIIKLGFKVVFVAVS--AYGL 152 (227) T ss_dssp HHHHHHHHTBCCSEEE---CCCSSCHHHHHHHHHHHHHHTCEE-ECTTTT-CCHHHHHHHHHHTTCEEEEEEEC--STTC T ss_pred HHHHHHHHHHCCCEEE---ECCCHHHHHHHHHHHHHHHCCCEE-EECCCC-CCHHHHHHHHHHCCCCEEEEEEC--CCCC T ss_conf 9999999961886599---820011788999998898729689-841137-66799999999889959999961--2689 Q ss_pred CC---CCEEEE Q ss_conf 87---976400 Q T0613 230 DE---GPIIDQ 237 (287) Q Consensus 230 D~---GpII~Q 237 (287) |. |..|.+ T Consensus 153 ~~~~lGr~id~ 163 (227) T 2d13_A 153 NESWLGRELNY 163 (227) T ss_dssp CGGGTTCBCCH T ss_pred CHHHCCCCCCH T ss_conf 96890868669 No 36 >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, allostery, S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Probab=84.52 E-value=2.1 Score=21.94 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=23.3 Q ss_pred EEEEEEC---CCCCCHHHHHHHHHHHCCCCEEECCC Q ss_conf 8999984---99974699999999975984877111 Q T0613 6 YVLTLSC---PDRAGIVSAVSTFLFENGQNILDAQQ 38 (287) Q Consensus 6 ~VLTv~g---pDr~GIVA~Vt~~Lae~g~NI~disQ 38 (287) ..+++.+ +|.+|+.+++.+.|+++|+||.-++| T Consensus 342 ~~I~i~~~~~~~~~G~~arIf~~La~~gI~VdmIsq 377 (510) T 2cdq_A 342 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 377 (510) T ss_dssp EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCC T ss_conf 464114666688766888865799871754022026 No 37 >1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8 Probab=84.12 E-value=0.82 Score=24.73 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=37.9 Q ss_pred EEEEECC---CCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 9999849---9974699999999975984877111024565768999999628777898999999999998 Q T0613 7 VLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAA 74 (287) Q Consensus 7 VLTv~gp---Dr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~ 74 (287) .||+.++ |-+||+|+|++.|++.|+-|--+|.|. .+..|- +.+.+.++++.+.+ T Consensus 64 ~i~l~~~~~~~~vGi~a~is~~LA~agIsv~~vSty~---tDhilV-----------p~~~~~~A~~~L~~ 120 (134) T 1zhv_A 64 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFD---GDHLLV-----------RSNDLEKTADLLAN 120 (134) T ss_dssp EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSS---CEEEEE-----------EGGGHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC---CCEEEE-----------EHHHHHHHHHHHHH T ss_conf 9999646773133139999899987799669985212---648998-----------77789999999998 No 38 >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3btu_A Probab=81.26 E-value=2.8 Score=21.11 Aligned_cols=74 Identities=8% Similarity=-0.099 Sum_probs=40.4 Q ss_pred CHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCC------EEECCCCC--CCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 779999999668999438999728867-89-9999956995------99828888--88789999999999844899999 Q T0613 101 CLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIP------FYHFPVNK--DTRRQQEAAITALIAQTHTDLVV 170 (287) Q Consensus 101 ~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip------~~~~~~~~--~~r~~~e~~l~~~l~~~~~Dliv 170 (287) .+++||.. . +.+++.|.+.+.. +. ...|-++|+. ..+ . ++ .+-++. .++.++.++. .+.+ T Consensus 80 d~~ell~~---~--~vD~V~I~tp~~~H~~~~~~Al~aG~~~~~~KhVl~-E-KP~a~t~~ea-~~l~~~a~~~--g~~~ 149 (438) T 3btv_A 80 TLESFASS---S--TIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFV-E-WALACSLDQA-ESIYKAAAER--GVQT 149 (438) T ss_dssp SHHHHHHC---S--SCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEE-E-SSCCSSHHHH-HHHHHHHHTT--TCEE T ss_pred CHHHHHCC---C--CCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEE-E-CCCCCCHHHH-HHHHHHHHHC--CCEE T ss_conf 99999659---9--998899919827889999999975986456735898-4-6772879999-9999999850--9879 Q ss_pred EECCCCCCCHHHHH Q ss_conf 81221017978998 Q T0613 171 LARYMQILSDEMSA 184 (287) Q Consensus 171 LAgym~iL~~~~~~ 184 (287) ..+|++...|.+.. T Consensus 150 ~v~~~~r~~P~~~~ 163 (438) T 3btv_A 150 IISLQGRKSPYILR 163 (438) T ss_dssp EEECGGGGCHHHHH T ss_pred EEEEEECCCHHHHH T ss_conf 99862026778999 No 39 >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} Probab=80.22 E-value=2.9 Score=21.00 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=29.8 Q ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHCCCCEEECCCEEC----CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 970899998499-974699999999975984877111024----565768999999628777898999999999998725 Q T0613 3 HHQYVLTLSCPD-RAGIVSAVSTFLFENGQNILDAQQYND----TESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT 77 (287) Q Consensus 3 ~~~~VLTv~gpD-r~GIVA~Vt~~Lae~g~NI~disQf~d----~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~ 77 (287) |++..|.+.|.- +.-++..+... ..+..|.-.+..-. ...+.|+.. +. .+-+...+++.+++++.+ T Consensus 2 m~k~~ILit~~g~~~~li~~~~~~--~~~~~vi~~D~~~~~~~~~~~D~~~~v-----p~--~~~~~~~~~l~~i~~~~~ 72 (331) T 2pn1_A 2 MQKPHLLITSAGRRAKLVEYFVKE--FKTGRVSTADCSPLASALYMADQHYIV-----PK--IDEVEYIDHLLTLCQDEG 72 (331) T ss_dssp TTCCEEEEESCTTCHHHHHHHHHH--CCSSEEEEEESCTTCGGGGGSSSEEEC-----CC--TTSTTHHHHHHHHHHHHT T ss_pred CCCCEEEEECCCHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHCCEEEEC-----CC--CCCHHHHHHHHHHHHHHC T ss_conf 987789990784599999999975--999989998899998578846888987-----89--886679999999999979 Q ss_pred CCH Q ss_conf 201 Q T0613 78 MGW 80 (287) Q Consensus 78 ~~i 80 (287) .++ T Consensus 73 id~ 75 (331) T 2pn1_A 73 VTA 75 (331) T ss_dssp CCE T ss_pred CCE T ss_conf 999 No 40 >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Probab=76.66 E-value=3.8 Score=20.26 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=28.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-HHHHHHHCCCCEEE Q ss_conf 5634279998067877799999996689994389997288678-99999956995998 Q T0613 86 ETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYH 142 (287) Q Consensus 86 ~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~~~~a~~~~Ip~~~ 142 (287) .+|.|+||+- .|--=++|+.+.-...=.+|+..|.|.++.. +..++..+++++.. T Consensus 2 ~~kikVaIiG--tG~iG~eLl~~lL~~hp~vei~av~s~~~~g~~~~~a~~~~~~~~~ 57 (312) T 1nvm_B 2 NQKLKVAIIG--SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY 57 (312) T ss_dssp CSCEEEEEEC--CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCC T ss_conf 9887399986--8799999999998459996899998168254266777773996545 No 41 >1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9 Probab=75.71 E-value=2.1 Score=21.94 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=25.7 Q ss_pred EEEECC-CCCCHHHHHHHHHHHCCCCEEECCCE Q ss_conf 999849-99746999999999759848771110 Q T0613 8 LTLSCP-DRAGIVSAVSTFLFENGQNILDAQQY 39 (287) Q Consensus 8 LTv~gp-Dr~GIVA~Vt~~Lae~g~NI~disQf 39 (287) |.+++. |-+||+|+|++.|+++|+-|--++.| T Consensus 76 L~v~s~L~avGi~a~is~~La~~~Is~~~vst~ 108 (133) T 1zvp_A 76 LTVHSSLEAVGLTAAFATKLAEHGISANVIAGY 108 (133) T ss_dssp EECCC--CCSCHHHHHHHHHHHTTCCCEEEECS T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 962364214759999989998769983898624 No 42 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Probab=72.64 E-value=4.8 Score=19.53 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=42.4 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) +.++++++. . +.+.+.|.+.+.. +. ...|-++|++..+- |. ....+.-.++.++.++.+ ..+...||++ T Consensus 61 ~~~~ell~~---~--~vD~v~I~tp~~~H~~~~~~al~~gkhV~~EKP~--a~~~~e~~~l~~~a~~~~-~~~~~v~~~~ 132 (346) T 3cea_A 61 TNYKDMIDT---E--NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPL--GLDFNEVDEMAKVIKSHP-NQIFQSGFMR 132 (346) T ss_dssp SCHHHHHTT---S--CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCC--CSCHHHHHHHHHHHHTCT-TSCEECCCGG T ss_pred CCHHHHHCC---C--CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCC--CCCCCCCCHHHHHHHCCC-CEEEECCEEE T ss_conf 999999558---9--9988999275877899999998649869885574--223233101110000235-4244303343 Q ss_pred CCCHHHHH Q ss_conf 17978998 Q T0613 177 ILSDEMSA 184 (287) Q Consensus 177 iL~~~~~~ 184 (287) ...|.+.. T Consensus 133 r~~p~~~~ 140 (346) T 3cea_A 133 RYDDSYRY 140 (346) T ss_dssp GTCHHHHH T ss_pred ECCHHHHH T ss_conf 07999999 No 43 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=72.11 E-value=5 Score=19.45 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=46.2 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) ++++++|.. . +.+++.+.+.... +. ...|-++|.+.++= |.. .+-+ .-.++.++.++.+. .+..||++ T Consensus 56 ~~~~~ll~~---~--~~D~V~I~tp~~~H~~~~~~al~~GkhV~~EKP~a-~~~~-e~~~l~~~a~~~~~--~~~v~~~~ 126 (354) T 3db2_A 56 ATMEALLAR---E--DVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPIS-VSLD-HAQRIDQVIKETGV--KFLCGHSS 126 (354) T ss_dssp SSHHHHHHC---S--SCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSC-SSHH-HHHHHHHHHHHHCC--CEEEECGG T ss_pred CCHHHHHCC---C--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCC-CCHH-HHHHHHHHHHHHCC--EEEEEEEE T ss_conf 899999559---9--99999970847868999999998799088606876-9889-99999999997498--67885454 Q ss_pred CCCHHHHH Q ss_conf 17978998 Q T0613 177 ILSDEMSA 184 (287) Q Consensus 177 iL~~~~~~ 184 (287) ...|.+.. T Consensus 127 r~~p~~~~ 134 (354) T 3db2_A 127 RRLGALRK 134 (354) T ss_dssp GGSHHHHH T ss_pred ECCHHHHH T ss_conf 05868899 No 44 >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Probab=69.64 E-value=5.6 Score=19.10 Aligned_cols=128 Identities=10% Similarity=0.031 Sum_probs=67.3 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 97089999849997469999999997598487711102456576899999962877789899999999999872520100 Q T0613 3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHM 82 (287) Q Consensus 3 ~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i 82 (287) |++.-+=++|.-+-+ +......+.+.|+.|+-+- | .+.. ..+ +++++++- T Consensus 2 MkkirigiiG~g~~~-~~~~~~~l~~~~~elvav~---d-------------~~~~--~~~-------~~~~~~~~---- 51 (336) T 2p2s_A 2 MKKIRFAAIGLAHNH-IYDMCQQLIDAGAELAGVF---E-------------SDSD--NRA-------KFTSLFPS---- 51 (336) T ss_dssp --CCEEEEECCSSTH-HHHHHHHHHHTTCEEEEEE---C-------------SCTT--SCH-------HHHHHSTT---- T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHCCCCEEEEEE---C-------------CCHH--HHH-------HHHHHCCC---- T ss_conf 850579999578889-9999988641897899998---8-------------9999--999-------99987799---- Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHH-H-HHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHH Q ss_conf 013563427999806787779999999668999438999728867-8-999999569959982-8888887899999999 Q T0613 83 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR-E-TFSGFDFGDIPFYHF-PVNKDTRRQQEAAITA 159 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~-~-~~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~ 159 (287) ...-+++.++|.. . .++.+.+.+.... + ....|-++|.+.++= |.. .+ .+.-.++.+ T Consensus 52 -------------~~~~~~~~ell~~---~--~vDaV~I~tP~~~H~~~~~~al~agk~Vl~EKPla-~~-~~ea~~l~~ 111 (336) T 2p2s_A 52 -------------VPFAASAEQLITD---A--SIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPL-TT-LEQLDAVQR 111 (336) T ss_dssp -------------CCBCSCHHHHHTC---T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCC-SC-HHHHHHHHH T ss_pred -------------CCEECCHHHHHCC---C--CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCC-CC-CCHHHHHHH T ss_conf -------------9468989999559---9--98999983880889999999998499287502433-33-310289999 Q ss_pred HHHHCCCCEEEEECCCCCC-CHHH Q ss_conf 9984489999981221017-9789 Q T0613 160 LIAQTHTDLVVLARYMQIL-SDEM 182 (287) Q Consensus 160 ~l~~~~~DlivLAgym~iL-~~~~ 182 (287) ..++.+. .+..||++.. ++.+ T Consensus 112 ~~~~~~~--~~~v~~~~R~~~~~~ 133 (336) T 2p2s_A 112 RVAETGR--KFAVYFNERINVDSA 133 (336) T ss_dssp HHHHHCC--CEEECCTTTTTCHHH T ss_pred HHHHCCC--CCCCCCCCCCCHHHH T ss_conf 9874023--442210001446999 No 45 >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Probab=69.58 E-value=1.8 Score=22.41 Aligned_cols=178 Identities=9% Similarity=0.019 Sum_probs=76.1 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEC-CHHHHHHHHHHCCCCEEEC---------------------- Q ss_conf 63427999806787779999999668999438999728-8678999999569959982---------------------- Q T0613 87 TRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSN-HPRETFSGFDFGDIPFYHF---------------------- 143 (287) Q Consensus 87 ~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn-~~~~~~~~a~~~~Ip~~~~---------------------- 143 (287) .+.+-.|-+| .|.--|++-.+++.-.+++-|+ +.. -+......-+.+|-..... T Consensus 77 ~~~~gVV~aS-aGNha~gvA~~a~~lGi~~~Iv--mP~~t~~~K~~~~r~~GAeVi~~g~~~~~a~~~a~~~~~~~~~~~ 153 (514) T 1tdj_A 77 QKAHGVITAS-AGNHAQGVAFSSARLGVKALIV--MPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTW 153 (514) T ss_dssp SCSSSCEEEE-CSSSHHHHHHHHHHTTCCEEEE--CCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEE T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCC T ss_conf 7998799978-8699999999999849978999--858758999999997099568428631035665544431233223 Q ss_pred --CCCCCCHHHH-HHHHHHHHHHC-CCCEEEEEC-CCCCC---CHHHHHHCC-CCEEEECCCCCCCCCCCCHHHHHHHCC Q ss_conf --8888887899-99999999844-899999812-21017---978998417-998983304278766631699999817 Q T0613 144 --PVNKDTRRQQ-EAAITALIAQT-HTDLVVLAR-YMQIL---SDEMSARLA-GRCINIHHSFLPGFKGAKPYHQAFDRG 214 (287) Q Consensus 144 --~~~~~~r~~~-e~~l~~~l~~~-~~DlivLAg-ym~iL---~~~~~~~~~-~riiNiHpSlLP~f~G~~~~~~a~~~G 214 (287) |...+...+. ..--.+++++. ++|.||..- -.-.+ ...|-+..+ -++|-+-|. |+.++.+++..| T Consensus 154 i~~~d~p~~iaGq~Ti~~Ei~~q~~~~D~vvvpvGgGGliaGia~~lk~~~p~ikIigVEp~------~a~~~~~s~~~g 227 (514) T 1tdj_A 154 VPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAE------DSACLKAALDAG 227 (514) T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEET------TTCHHHHHHHHT T ss_pred CCCCCCHHHHCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCC------CCHHHHHHHHCC T ss_conf 44435715524240367789987589898999727508999999999874997605655701------045788787579 Q ss_pred CEEEEEEEEEEECCCCCCCE-------EE---EEEEECCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHCCE Q ss_conf 90855689987078887976-------40---01575388989899999999988--------999999999885983 Q T0613 215 VKLIGATAHYVTSALDEGPI-------ID---QDVERISHRDTPADLVRKGRDIE--------RRVLSRALHYHLDDR 274 (287) Q Consensus 215 vk~~G~TvH~V~~~lD~GpI-------I~---Q~~v~V~~~dt~e~L~~r~~~~E--------~~~l~~ai~~~~e~r 274 (287) ..+...++.-.-+++..+.+ +. -..+.|..++..+.+..- .+.| ...++-++++...++ T Consensus 228 ~~v~~~~~~t~adGiav~~vG~~~~~~~~~~vD~vv~Vsd~ei~~Ai~~L-~~~egivvepagA~alAal~k~~~~~~ 304 (514) T 1tdj_A 228 HPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDL-FEDVRAVAEPSGALALAGMKKYIALHN 304 (514) T ss_dssp SCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHH-HHHTCCCCCHHHHHHHHHHHHHHHHHT T ss_pred CEECCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHH-HHHCCEEEEECHHHHHHHHHHHHHHHC T ss_conf 75225888862155368987688999876248779981599999999999-998390899156889999999987603 No 46 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Probab=69.58 E-value=5.6 Score=19.09 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=48.7 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) +.+++++.. -..+.+.|.+.... +. ...|-++|++..+= |.. .+-+ .-.++.+..++.+ .++..||++ T Consensus 55 ~~~~e~l~~-----~~iD~V~I~tp~~~H~~~~~~al~~gk~vl~EKPla-~~~~-ea~~l~~~~~~~~--~~~~v~~~~ 125 (344) T 3euw_A 55 ASPDEVFAR-----DDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPID-LDIE-MVRACKEKIGDGA--SKVMLGFNR 125 (344) T ss_dssp SSHHHHTTC-----SCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSC-SCHH-HHHHHHHHHGGGG--GGEEECCGG T ss_pred CCHHHHHCC-----CCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCH-HHCC-HHHHHHHHHHCCC--CCCCCCCEE T ss_conf 989999548-----998866411210101233210012222221355310-1000-0245666652133--322134200 Q ss_pred CCCHHHHH-------HCCCCEEEEC Q ss_conf 17978998-------4179989833 Q T0613 177 ILSDEMSA-------RLAGRCINIH 194 (287) Q Consensus 177 iL~~~~~~-------~~~~riiNiH 194 (287) ...|.+-. ..-|++..++ T Consensus 126 r~~p~~~~~k~~i~~~~lG~i~~~~ 150 (344) T 3euw_A 126 RFDPSFAAINARVANQEIGNLEQLV 150 (344) T ss_dssp GGCHHHHHHHHHHHTTTTSSEEEEE T ss_pred ECCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 0328889999987548864168999 No 47 >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.30A {Escherichia coli} Probab=66.90 E-value=6.4 Score=18.73 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.4 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECC Q ss_conf 9999849997469999999997598487711 Q T0613 7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQ 37 (287) Q Consensus 7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~dis 37 (287) .+-++|.||.|++..+...+++++.|+..+. T Consensus 2 rl~i~~~DRiGl~~eil~~l~~~~i~l~~i~ 32 (190) T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIE 32 (190) T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEE T ss_pred CEEEECHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 2269721063469999999875785499999 No 48 >3a14_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- binding, NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} Probab=65.62 E-value=6.7 Score=18.57 Aligned_cols=118 Identities=12% Similarity=0.202 Sum_probs=67.0 Q ss_pred CCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHCCCCEEECCCCCCCHH------HHHHHH Q ss_conf 6342799980678--7779999999668999438999728867-899999956995998288888878------999999 Q T0613 87 TRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHPR-ETFSGFDFGDIPFYHFPVNKDTRR------QQEAAI 157 (287) Q Consensus 87 ~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~~-~~~~~a~~~~Ip~~~~~~~~~~r~------~~e~~l 157 (287) .++||+||.|-.+ ++--+++.+ .. +-+|.++-+|+.- ...+.+.++..++.++.-...... .-+..+ T Consensus 2 ~kK~I~IlGSTGSIG~~tL~Vi~~--~~--~f~v~~lsa~~N~~~L~~q~~~f~p~~v~i~~~~~~~~~~~~i~~g~~~l 77 (376) T 3a14_A 2 EERTLVILGATGSIGTQTLDVLKK--VK--GIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSI 77 (376) T ss_dssp -CEEEEEETTTSHHHHHHHHHHHH--SC--SEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCTTSEEEESTTHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CC--CCEEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCEEECCHHHH T ss_conf 947899988780999999999954--89--96599997798899999999981999999948899765088050486679 Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECC--CCCCCEE Q ss_conf 99998448999998122101797899841799898330427876663169999981790855689987078--8879764 Q T0613 158 TALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSA--LDEGPII 235 (287) Q Consensus 158 ~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~--lD~GpII 235 (287) .++++..++|+++.| +..|.|..|--.|+.+|-++. ..+.| +=+|++| T Consensus 78 ~~~~~~~~~D~vi~A-------------------------i~G~aGL~pt~~ai~~gk~ia-----LANKEslV~aG~li 127 (376) T 3a14_A 78 EEMLEALKPDITMVA-------------------------VSGFSGLRAVLASLEHSKRVC-----LANKESLVCGGFLV 127 (376) T ss_dssp HHHHHHHCCSEEEEC-------------------------CCSTTHHHHHHHHHHHCSEEE-----ECCSHHHHHHHHHH T ss_pred HHHHCCCCCCEEEEE-------------------------CCHHHHCHHHHHHHCCCCEEE-----EECCCCEEECCHHH T ss_conf 987455777789995-------------------------312310325676650585799-----95476289885888 Q ss_pred EEE Q ss_conf 001 Q T0613 236 DQD 238 (287) Q Consensus 236 ~Q~ 238 (287) .+. T Consensus 128 ~~~ 130 (376) T 3a14_A 128 KKK 130 (376) T ss_dssp HHH T ss_pred HHH T ss_conf 889 No 49 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Probab=62.69 E-value=7.6 Score=18.21 Aligned_cols=90 Identities=4% Similarity=-0.087 Sum_probs=53.7 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-H-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 7779999999668999438999728867-8-9999995699599828888887899999999998448999998122101 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-E-TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQI 177 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~-~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~i 177 (287) +++.++|..- +.+++.|.+.... + ....|-++|++..+= .--....+.-.++.++.++++ ++++.||++. T Consensus 58 ~~~~ell~~~-----~~D~V~I~tp~~~H~~~a~~al~~GkhVl~E-KPla~~~~ea~~l~~~a~~~~--~~~~v~~~~r 129 (359) T 3m2t_A 58 DNVPAMLNQV-----PLDAVVMAGPPQLHFEMGLLAMSKGVNVFVE-KPPCATLEELETLIDAARRSD--VVSGVGMNFK 129 (359) T ss_dssp SSHHHHHHHS-----CCSEEEECSCHHHHHHHHHHHHHTTCEEEEC-SCSCSSHHHHHHHHHHHHHHT--CCEEECCHHH T ss_pred CCHHHHHCCC-----CCCEEEECCCHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHHHHHHC--CCCCCCEEEE T ss_conf 8999996599-----9998998786566258999997439962797-640001468899888887631--2433430121 Q ss_pred CCHHHHHH-------CCCCEEEECCCC Q ss_conf 79789984-------179989833042 Q T0613 178 LSDEMSAR-------LAGRCINIHHSF 197 (287) Q Consensus 178 L~~~~~~~-------~~~riiNiHpSl 197 (287) ..|.+... .-|++..++-.. T Consensus 130 ~~p~~~~~k~~i~~g~iG~i~~v~~~~ 156 (359) T 3m2t_A 130 FARPVRQLREMTQVDEFGETLHIQLNH 156 (359) T ss_dssp HCHHHHHHHHHHTSGGGCCEEEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 001337799999750268538999612 No 50 >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Probab=62.67 E-value=7 Score=18.46 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=17.3 Q ss_pred CHHHHHHHHHCCCCCCEEEEEEECC----HHHHHHHHHHCCCCEEEC Q ss_conf 7799999996689994389997288----678999999569959982 Q T0613 101 CLADILYRWRVGDLHMIPTAIVSNH----PRETFSGFDFGDIPFYHF 143 (287) Q Consensus 101 ~l~all~~~~~g~L~~ei~~Visn~----~~~~~~~a~~~~Ip~~~~ 143 (287) .+..+.+.+.+.+ .+++++... .+...+.|++.|+|+..- T Consensus 203 ~~~~~~~~l~~a~---rpviv~G~g~~~~~~~l~~lae~l~~PV~~t 246 (590) T 1ybh_A 203 HLEQIVRLISESK---KPVLYVGGGCLNSSDELGRFVELTGIPVAST 246 (590) T ss_dssp HHHHHHHHHHHCS---SEEEEECGGGTTCHHHHHHHHHHHCCCEEEC T ss_pred HHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHHHCCCEEEC T ss_conf 9999999997079---9199989862451999999999869899987 No 51 >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} Probab=61.73 E-value=7.9 Score=18.10 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=46.9 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) +++.+++. .. +++++.+.+.... +. ...|-++|.+..+= |.. .+-++. .++.++.++.+. ++.-||++ T Consensus 57 ~~~~e~l~---~~--~iD~V~I~tp~~~h~~~~~~al~~gk~vl~EKP~~-~~~~e~-~~l~~~a~~~~~--~~~v~~~~ 127 (329) T 3evn_A 57 DKLEDMLA---DE--SIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFT-LTYDQA-NELFALAESCNL--FLMEAQKS 127 (329) T ss_dssp SCHHHHHT---CT--TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCC-SSHHHH-HHHHHHHHHTTC--CEEEECSS T ss_pred CCHHHHHC---CC--CCCHHCCCCCHHHCCCCCCCCCCCCCHHHCCCCCC-CCCCCC-CCCCCCCCCCCC--CCCCCCCC T ss_conf 88999963---87--64400023420000132210113331101254532-111112-222222222343--32222223 Q ss_pred CCCHHHHHHC-------CCCEEEEC Q ss_conf 1797899841-------79989833 Q T0613 177 ILSDEMSARL-------AGRCINIH 194 (287) Q Consensus 177 iL~~~~~~~~-------~~riiNiH 194 (287) ...|.+...- =|++..+. T Consensus 128 R~~p~~~~lk~~i~~g~iG~i~~i~ 152 (329) T 3evn_A 128 VFIPMTQVIKKLLASGEIGEVISIS 152 (329) T ss_dssp CSSHHHHHHHHHHHTTTTCSEEEEE T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCC T ss_conf 5686036778776501434100024 No 52 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Probab=61.19 E-value=8.1 Score=18.04 Aligned_cols=100 Identities=10% Similarity=0.085 Sum_probs=55.7 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) ++++++|.. . +++++.+.+.... +. ...|-++|.|..+= |.. .+-++. .++.++.++.+ ..++..||++ T Consensus 77 ~~~~ell~~---~--~iDaV~i~tp~~~H~~~~~~al~~GkhV~~EKP~a-~~~~ea-~~l~~~~~~~~-~~~~~v~~~~ 148 (357) T 3ec7_A 77 NDYHDLIND---K--DVEVVIITASNEAHADVAVAALNANKYVFCEKPLA-VTAADC-QRVIEAEQKNG-KRMVQIGFMR 148 (357) T ss_dssp SSHHHHHHC---T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSC-SSHHHH-HHHHHHHHHHT-SCCEEEECGG T ss_pred CCHHHHHCC---C--CCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCH-HHHHHH-HHHHHHHHCCC-CCCCCCCCCC T ss_conf 999999659---9--98889988985011467999985288799958832-448999-99886541146-6432233211 Q ss_pred CCCHHHHHH-------CCCCEEEE-----CCCCCCCCCCCCHH Q ss_conf 179789984-------17998983-----30427876663169 Q T0613 177 ILSDEMSAR-------LAGRCINI-----HHSFLPGFKGAKPY 207 (287) Q Consensus 177 iL~~~~~~~-------~~~riiNi-----HpSlLP~f~G~~~~ 207 (287) ...|.+... --|++..+ ++...|.++|.+.. T Consensus 149 R~~p~~~~~k~~i~~g~~G~~~~~~~~~~~~~~~~~~~~gg~l 191 (357) T 3ec7_A 149 RYDKGYVQLKNIIDSGEIGQPLMVHGRHYNASTVPEYKTPQAI 191 (357) T ss_dssp GGSHHHHHHHHHHHHTTTCSEEEEEEEEECSCCCTTCCTTHHH T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCHH T ss_conf 1483888999998754058630110000234677333200336 No 53 >1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A Probab=60.91 E-value=8.2 Score=18.01 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=54.9 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 01356342799980678777999999966899943899972886789999995699599828888887899999999998 Q T0613 83 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA 162 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~ 162 (287) ..--+++|++|+.+|.--. ..|+-...-...=||..-+... .+++|.......+-.++++....++.+.++ T Consensus 172 V~V~~~prV~iisTGdEL~--------~~~~~~~~g~i~dsN~~~l~al-l~~~G~~~~~~~~~~Dd~~~l~~~~~~~~~ 242 (411) T 1g8l_A 172 VPVIRKVRVALFSTGDELQ--------LPGQPLGDGQIYDTNRLAVHLM-LEQLGCEVINLGIIRDDPHALRAAFIEADS 242 (411) T ss_dssp EEEECCCEEEEEEECTTEE--------CTTSCCCSSCEECCHHHHHHHH-HHHTTCEEEEEEEECSCHHHHHHHHHHHHH T ss_pred EEEECCCEEEEECCCCCCC--------CCCCCCCCCCEEECCHHHHHHH-HHHCCCEEEEECCCCCCHHHHHHHHHHHHC T ss_conf 8997165489980366445--------7998787882774369999999-997798248806657999999999997520 Q ss_pred HCCCCEEEEECCCCCCCHHHHH Q ss_conf 4489999981221017978998 Q T0613 163 QTHTDLVVLARYMQILSDEMSA 184 (287) Q Consensus 163 ~~~~DlivLAgym~iL~~~~~~ 184 (287) + .|+|+..|-...=..+|+. T Consensus 243 ~--~DivIttGG~S~G~~D~v~ 262 (411) T 1g8l_A 243 Q--ADVVISSGGVSVGEADYTK 262 (411) T ss_dssp H--CSEEEECSSSCSSSCSHHH T ss_pred C--CCEEEECCCCCCCCCHHHH T ss_conf 5--5259952577888212699 No 54 >2qo3_A Eryaii erythromycin polyketide synthase modules 3 and 4; ketosynthase, acyltransferase, phosphopantetheine; 2.59A {Saccharopolyspora erythraea} Probab=57.22 E-value=9.4 Score=17.60 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=57.6 Q ss_pred CEEEEEEECCCCCCHHHHHHHH---HHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC- Q ss_conf 7089999849997469999999---997598487711102456576899999962877789899999999999872520- Q T0613 4 HQYVLTLSCPDRAGIVSAVSTF---LFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG- 79 (287) Q Consensus 4 ~~~VLTv~gpDr~GIVA~Vt~~---Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~- 79 (287) ..++++++++|..++-.....+ |........++..........|..|..+... +.++|.+.+....+..... T Consensus 445 ~~~ll~lSA~s~~aL~~~~~~l~~~l~~~~~~l~~~a~tl~~~r~~~~~R~a~va~----s~~el~~~L~~~~~~~~~~~ 520 (915) T 2qo3_A 445 RPVPLVVSARSTAALRAQAAQIAELLERPDADLAGVGLGLATTRARHEHRAAVVAS----TREEAVRGLREIAAGAATAD 520 (915) T ss_dssp SCEEEEEEESSHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHSSCCCSEEEEEEES----SHHHHHHHHHHHHHTCCCCT T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEC----CHHHHHHHHHHHHCCCCCCC T ss_conf 84467745799999999999999997365410578999987313113340589858----99999999999963898877 Q ss_pred --HHHCCCCCCCCEEEEEECCCC Q ss_conf --100013563427999806787 Q T0613 80 --WHMRDRETRRKVMLLVSQSDH 100 (287) Q Consensus 80 --i~i~~~~~~~riavlvSg~g~ 100 (287) ..-......+|++.+-||.|+ T Consensus 521 ~~~~~~~~~~~~~vafvF~GQGs 543 (915) T 2qo3_A 521 AVVEGVTEVDGRNVVFLFPGQGS 543 (915) T ss_dssp TEEEEECSCSCCCEEEEECCTTC T ss_pred CCCCCCCCCCCCCEEEEECCCCC T ss_conf 64456566776888999799860 No 55 >1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} Probab=56.96 E-value=9.5 Score=17.57 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=22.5 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH---HHCCCCEEEC Q ss_conf 970899998499974699999999---9759848771 Q T0613 3 HHQYVLTLSCPDRAGIVSAVSTFL---FENGQNILDA 36 (287) Q Consensus 3 ~~~~VLTv~gpDr~GIVA~Vt~~L---ae~g~NI~di 36 (287) |.+.-|..+|-|.||+=+.+.++. ..+|..+.-+ T Consensus 1 mkrI~Il~sGG~~pG~N~~i~~~v~~a~~~~~~v~g~ 37 (319) T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGI 37 (319) T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 9889998857873779999999999999789989998 No 56 >1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 Probab=53.87 E-value=11 Score=17.24 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=68.9 Q ss_pred CCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHH Q ss_conf 59848771110245657689999996287778989999999999987252010001356342799980678777999999 Q T0613 29 NGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYR 108 (287) Q Consensus 29 ~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i~~~~~~~riavlvSg~g~~l~all~~ 108 (287) .|-||...-. |...|.. .+ ..+..++.. .. .+....|+ .-..--+++|++|+.+|.-=. + T Consensus 135 ~g~nIr~~Ge--d~~~G~~----ll-~~G~~i~p~-~i----~~Las~Gi--~~V~V~r~prV~iisTGdEL~-----~- 194 (402) T 1uz5_A 135 PGLGVMKKGI--DIEKGRL----LV-KKGERLGFK-QT----ALLSAVGI--NKVKVFRKPKVAVISTGNEIV-----P- 194 (402) T ss_dssp TTTTEECTTS--SBCTTCE----EE-CTTCBCCHH-HH----HHHHHTTC--CEEEEECCCEEEEEEECTTEE-----C- T ss_pred CCCCEEECCH--HHCCCCC----EE-CCCCCCCHH-HH----HHHHHCCC--CEEEEEECCEEEEEEECCCCC-----C- T ss_conf 9970881451--0038971----87-467514344-45----57874595--389999455189995045656-----8- Q ss_pred HHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH Q ss_conf 96689994389997288678999999569959982888888789999999999844899999812210179789 Q T0613 109 WRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEM 182 (287) Q Consensus 109 ~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~iL~~~~ 182 (287) .|+-...=...=||..-+... .+++|.......+-.++++....++.+.+++ .|+|+..|-...=..+| T Consensus 195 --~~~~~~~g~i~dsN~~~L~a~-l~~~g~~~~~~~~v~D~~~~i~~~~~~~~~~--~DiiIttGG~S~G~~D~ 263 (402) T 1uz5_A 195 --PGNELKPGQIYDINGRALCDA-INELGGEGIFMGVARDDKESLKALIEKAVNV--GDVVVISGGASGGTKDL 263 (402) T ss_dssp --TTSCCCTTCEECCHHHHHHHH-HHHHTSEEEEEEEECSSHHHHHHHHHHHHHH--CSEEEEECCC-----CH T ss_pred --CCCCCCCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHCCCCC--CCEEEEECCCCCCHHHH T ss_conf --898888774145322555666-7645961143100330677766654203323--42479725734312377 No 57 >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Probab=52.41 E-value=11 Score=17.09 Aligned_cols=78 Identities=8% Similarity=-0.023 Sum_probs=38.8 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCC-----EEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEE Q ss_conf 7779999999668999438999728867-89-9999956995-----998288888878999-99999998448999998 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIP-----FYHFPVNKDTRRQQE-AAITALIAQTHTDLVVL 171 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip-----~~~~~~~~~~r~~~e-~~l~~~l~~~~~DlivL 171 (287) +++++|+.. . +++++.|.+.+.. +. ...|-++|++ .+++. ++-.....| .++.++.++ ...+.+. T Consensus 98 ~d~~ell~~---~--~iD~V~I~tP~~~H~~~~~~al~aG~~~~~~KhVl~E-KPla~~~~ea~~l~~~a~~-~~~v~~~ 170 (479) T 2nvw_A 98 DSLESFAQY---K--DIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVE-WALAASVQQAEELYSISQQ-RANLQTI 170 (479) T ss_dssp SCHHHHHHC---T--TCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEE-SSSSSSHHHHHHHHHHHHT-CTTCEEE T ss_pred CCHHHHHCC---C--CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHH-CCCEEEE T ss_conf 999999559---9--9988999498078999999999749754568749995-7865777889999997640-4634798 Q ss_pred ECCCCCCCHHHHH Q ss_conf 1221017978998 Q T0613 172 ARYMQILSDEMSA 184 (287) Q Consensus 172 Agym~iL~~~~~~ 184 (287) .||++...|.+.. T Consensus 171 v~~~~R~~p~~~~ 183 (479) T 2nvw_A 171 ICLQGRKSPYIVR 183 (479) T ss_dssp EECGGGGCHHHHH T ss_pred EEEEECCCHHHHH T ss_conf 7542014706889 No 58 >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2, protein structure initiative; 2.31A {Porphyromonas gingivalis} Probab=51.98 E-value=11 Score=17.04 Aligned_cols=34 Identities=3% Similarity=-0.072 Sum_probs=29.2 Q ss_pred EEEEEEECCC---CCCHHHHHHHHHHHCCCCEEECCC Q ss_conf 0899998499---974699999999975984877111 Q T0613 5 QYVLTLSCPD---RAGIVSAVSTFLFENGQNILDAQQ 38 (287) Q Consensus 5 ~~VLTv~gpD---r~GIVA~Vt~~Lae~g~NI~disQ 38 (287) -..+|+.+++ .+|+.+++.+.|+++|+||.-++| T Consensus 18 i~~i~i~~~~~~~~~g~~~~if~~l~~~~I~vd~i~~ 54 (157) T 3mah_A 18 ITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT 54 (157) T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 8999995789777410999999999981997899965 No 59 >1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B* Probab=50.67 E-value=12 Score=16.91 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=21.6 Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 995699599828888887899999999998448999998122101 Q T0613 133 FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQI 177 (287) Q Consensus 133 a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~i 177 (287) +...+.+..++-.+++.-.+.-.++.+.+++.+++.|+|||.-.- T Consensus 556 ~~~~~~~~~vicssd~~y~~~a~~~~~alk~~g~~~v~lAG~p~~ 600 (637) T 1req_B 556 FKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKE 600 (637) T ss_dssp HHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGG T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 986599889995786106888999999999669985999727887 No 60 >1z2m_A ISG15, interferon, alpha-inducible protein (clone IFI- 15K); ubiquitin cross reactive protein, signaling protein; 2.50A {Homo sapiens} SCOP: d.15.1.1 d.15.1.1 Probab=50.46 E-value=12 Score=16.89 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=34.8 Q ss_pred EEEEEEEEEECCCCCC-CEEE------EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 8556899870788879-7640------0157538898989999999998899999999988598389 Q T0613 217 LIGATAHYVTSALDEG-PIID------QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 217 ~~G~TvH~V~~~lD~G-pII~------Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) ..|.|+|+|....+.+ .|.. .-.+.|.++||+++|.+++.+.+.. -+...+|+..||.. T Consensus 66 ~~gs~i~l~~~~~~~~~~I~Vk~~~G~~~~~~v~~~~tV~~LK~~I~~~~gi-p~~~q~Li~~Gk~L 131 (155) T 1z2m_A 66 GPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV-QDDLFWLTFEGKPL 131 (155) T ss_dssp CTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTC-CGGGEEEEETTEEC T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCC-CHHHEEEEECCEEC T ss_conf 8677799995236783489999689999999968989099999989887366-65466888898598 No 61 >1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A* Probab=49.97 E-value=12 Score=16.84 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=50.5 Q ss_pred CCHHHCCCCCCCCEEEEEECCCCCHHH--HHHHHH-----CCCCCCEEEEEEECCHHH-HHHHH----HHCCCCEEECCC Q ss_conf 201000135634279998067877799--999996-----689994389997288678-99999----956995998288 Q T0613 78 MGWHMRDRETRRKVMLLVSQSDHCLAD--ILYRWR-----VGDLHMIPTAIVSNHPRE-TFSGF----DFGDIPFYHFPV 145 (287) Q Consensus 78 ~~i~i~~~~~~~riavlvSg~g~~l~a--ll~~~~-----~g~L~~ei~~Visn~~~~-~~~~a----~~~~Ip~~~~~~ 145 (287) ++.-++....+..|-+.+-|+|..++- .-+... -.+.+.+.+++||-++.+ ++..| ...|||..++.- T Consensus 20 idllLDErAdRedi~vrv~gsGaKM~pe~~e~~v~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~giP~IvI~D 99 (283) T 1qv9_A 20 MDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGD 99 (283) T ss_dssp TTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEE T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECC T ss_conf 99987654034686389952666779788999999767678740899899978998999957799998747998799758 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 88887899999999998448999998 Q T0613 146 NKDTRRQQEAAITALIAQTHTDLVVL 171 (287) Q Consensus 146 ~~~~r~~~e~~l~~~l~~~~~DlivL 171 (287) ....| . .+.+++.+--||++ T Consensus 100 ~p~~K-~-----~d~~~~~GfGYIiv 119 (283) T 1qv9_A 100 APGLK-V-----KDEMEEQGLGYILV 119 (283) T ss_dssp GGGGG-G-----HHHHHHTTCEEEEE T ss_pred CCCHH-H-----HHHHHHCCCCEEEE T ss_conf 85254-6-----89998648847997 No 62 >1gso_A Protein (glycinamide ribonucleotide synthetase); GAR-SYN, ATP-grAsp, purine de novo biosynthetic pathway, substrate channeling, ligase; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=49.38 E-value=7.1 Score=18.40 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=35.8 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-9999956995998288888878999-9999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHFPVNKDTRRQQE-AAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~~~~~~~r~~~e-~~l~~~l~~~~~DlivLAgym~ 176 (287) .+.+.+++-++.-+. +.+++-+-.+- .+ ....+++|+|..- |.....+.+.+ ...-+.++++++-. +.|.. T Consensus 53 ~~~~~v~~~~~~~~i--d~vi~g~e~pL~~gl~d~l~~~g~~v~G-~~~~~~~le~sK~~~k~~m~~~~ipt---~~~~~ 126 (431) T 1gso_A 53 TDIPALLDFAQNEKI--DLTIVGPEAPLVKGVVDTFRAAGLKIFG-PTAGAAQLEGSKAFTKDFLARHKIPT---AEYQN 126 (431) T ss_dssp TCHHHHHHHHHHTTC--SEEEECSHHHHHTTHHHHHHHTTCCEES-CCTTTTHHHHCHHHHHHHHHHTTCCB---CCEEE T ss_pred CCHHHHHHHHHHHCC--CEEEECCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHCCHHHHHHHHHHHCCCC---CCCEE T ss_conf 999999999999697--9999897188888999999866997559-56999998709587999988633367---76235 Q ss_pred CCC----HHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 179----7899841799898330427876663 Q T0613 177 ILS----DEMSARLAGRCINIHHSFLPGFKGA 204 (287) Q Consensus 177 iL~----~~~~~~~~~riiNiHpSlLP~f~G~ 204 (287) .-+ -.|++.+...+ =+-|+.+=+-+|. T Consensus 127 ~~~~eea~~~~~~~~~P~-VvKp~~~~gGkGv 157 (431) T 1gso_A 127 FTEVEPALAYLREKGAPI-VIKADGLAAGKGV 157 (431) T ss_dssp ESSSSHHHHHHHHHCSSE-EEEC------CCE T ss_pred EEEHHHHHHHHHHCCCCE-EEECCCCCCCCCC T ss_conf 630354445665059863-6420323477672 No 63 >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Probab=48.47 E-value=13 Score=16.69 Aligned_cols=76 Identities=3% Similarity=0.053 Sum_probs=45.5 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) +++.+++.. .+ .+.+.|.+.... +. ...|-++|++.++= |.. .+.++ -.++.+..++.+ ..+..||.+ T Consensus 54 ~~~~ell~~---~~--iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~a-~~~~e-a~~l~~~a~~~~--~~~~v~~~~ 124 (344) T 3ezy_A 54 KDPHELIED---PN--VDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLS-LNLAD-VDRMIEETKKAD--VILFTGFNR 124 (344) T ss_dssp SSHHHHHHC---TT--CCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSC-SCHHH-HHHHHHHHHHHT--CCEEEECGG T ss_pred CCHHHHHCC---CC--CCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCC-CCHHH-HHHHHHHHHCCC--CEEEEEECC T ss_conf 999999549---99--8999982421001999999997179589965721-01247-887777764259--759998343 Q ss_pred CCCHHHHH Q ss_conf 17978998 Q T0613 177 ILSDEMSA 184 (287) Q Consensus 177 iL~~~~~~ 184 (287) ...|.+.. T Consensus 125 r~~p~~~~ 132 (344) T 3ezy_A 125 RFDRNFKK 132 (344) T ss_dssp GGCHHHHH T ss_pred CCCHHHHH T ss_conf 37999999 No 64 >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Probab=48.25 E-value=1.3 Score=23.29 Aligned_cols=45 Identities=20% Similarity=0.032 Sum_probs=30.0 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE Q ss_conf 0157538898989999999998899999999988598389826748 Q T0613 237 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKT 282 (287) Q Consensus 237 Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~kt 282 (287) .-.+.|.++||+.+|++++.+.+.. -+...+|+..||+.+..++| T Consensus 22 ~~~ieV~~~~TV~~lK~~I~~~~gi-p~~~QrLi~~Gk~lL~D~~t 66 (84) T 2kk8_A 22 SFELEVDYRDTLLVVKQKIERSQHI-PVSKQTLIVDGIVILREDLT 66 (84) T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTC-CGGGEEEEETTEECCCSSSB T ss_pred EEEEEECCCCHHHHHHHHHHHHCCC-CHHHEEEEECCEEECCCCCC T ss_conf 9999989958799999987877399-95059999999868448988 No 65 >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Probab=48.01 E-value=13 Score=16.64 Aligned_cols=15 Identities=13% Similarity=-0.119 Sum_probs=9.5 Q ss_pred HHHHCCCCEEECCCC Q ss_conf 999569959982888 Q T0613 132 GFDFGDIPFYHFPVN 146 (287) Q Consensus 132 ~a~~~~Ip~~~~~~~ 146 (287) .++.++|||..-|.+ T Consensus 167 y~~~~~i~~~eD~SN 181 (433) T 1ni5_A 167 WARQYDLRWIEDESN 181 (433) T ss_dssp HHHHTTCCCBCCCCG T ss_pred HHHHCCCCCCCCCCC T ss_conf 875366552046567 No 66 >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Probab=47.17 E-value=13 Score=16.55 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=33.0 Q ss_pred CCCCCEEEEEECC--CCCHHHHHHHHHCCCCCCEEEEEEECCH-HHHHHHHHHCCCCEEECC Q ss_conf 5634279998067--8777999999966899943899972886-789999995699599828 Q T0613 86 ETRRKVMLLVSQS--DHCLADILYRWRVGDLHMIPTAIVSNHP-RETFSGFDFGDIPFYHFP 144 (287) Q Consensus 86 ~~~~riavlvSg~--g~~l~all~~~~~g~L~~ei~~Visn~~-~~~~~~a~~~~Ip~~~~~ 144 (287) ..++||+||.|-. |.+.-+++.+.. =.-+|.++.+|+. +...+.+.++...+.++. T Consensus 2 ~~~K~I~ILGSTGSIG~~tL~Vi~~~~---d~f~v~~Lsa~~N~~~L~~q~~~f~P~~v~i~ 60 (388) T 1r0k_A 2 SQPRTVTVLGATGSIGHSTLDLIERNL---DRYQVIALTANRNVKDLADAAKRTNAKRAVIA 60 (388) T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTG---GGEEEEEEEESSCHHHHHHHHHHTTCSEEEES T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CCCEEEEEEECCCHHHHHHHHHHHCCCEEEEC T ss_conf 998889998868798899999998396---77279999938989999999998399999990 No 67 >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} SCOP: c.2.1.4 c.23.12.3 Probab=46.62 E-value=14 Score=16.50 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=43.7 Q ss_pred CCCCEEEEEEECC----HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH-----HCCCCEEEEEC Q ss_conf 9994389997288----6789999995699599828888887899999999998-----44899999812 Q T0613 113 DLHMIPTAIVSNH----PRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA-----QTHTDLVVLAR 173 (287) Q Consensus 113 ~L~~ei~~Visn~----~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~-----~~~~DlivLAg 173 (287) ++.|++...-||- ++.++.-++..|||.+ .++..+.++|..-+.+.|. ..+||+|+=-| T Consensus 68 ~lGAeV~~~scNp~STQDdvAAAL~~~~Gi~Vf--Awkget~eeY~~~~~~~L~~~~g~~~~P~iiiDDG 135 (479) T 1v8b_A 68 KLGAQIRWCSCNIYSTADYAAAAVSTLENVTVF--AWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDG 135 (479) T ss_dssp HTTCEEEEECSSSSCCCHHHHHHHTTSTTEEEE--CCTTCCHHHHHHHHHHHHCCSSSSSCSCSEEEESS T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEE--EECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECC T ss_conf 869869998679764455999998861792699--97899979999999988607887788987899377 No 68 >2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Probab=46.39 E-value=4.2 Score=19.93 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.3 Q ss_pred CCCEEEECCCCCCCCCC Q ss_conf 79989833042787666 Q T0613 187 AGRCINIHHSFLPGFKG 203 (287) Q Consensus 187 ~~riiNiHpSlLP~f~G 203 (287) .|-+=||||+|||+=+| T Consensus 103 GGvlP~Ih~~Ll~kk~~ 119 (120) T 2f8n_G 103 GGVLPNIHPELLAKKRG 119 (120) T ss_dssp CCCCCCCCGGGSCCC-- T ss_pred CCCCCCCCHHHCCCCCC T ss_conf 85258748877467669 No 69 >1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 2cv5_C* 3c1b_C* 3c1c_C* 2fj7_C 1zbb_C 1m19_C 1m18_C 1m1a_C 1p34_C 1p3a_C 1p3b_C 1p3f_C 1p3g_C 1p3i_C 1p3k_C ... Probab=45.96 E-value=4.1 Score=20.00 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=13.4 Q ss_pred CCCEEEECCCCCCCCCCC Q ss_conf 799898330427876663 Q T0613 187 AGRCINIHHSFLPGFKGA 204 (287) Q Consensus 187 ~~riiNiHpSlLP~f~G~ 204 (287) .|-+=||||+|||+=.+. T Consensus 106 GGVlP~Ih~~Ll~kk~~~ 123 (129) T 1tzy_A 106 GGVLPNIQAVLLPKKTDS 123 (129) T ss_dssp CCCCCCCCGGGSCC---- T ss_pred CCCCCCCCHHHCCCCCCC T ss_conf 860664267655876677 No 70 >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A Probab=45.60 E-value=14 Score=16.40 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=21.2 Q ss_pred EEEECCCCCCCCCC------CCHHHHHHHCCCEEE-EEEEEEEEC Q ss_conf 89833042787666------316999998179085-568998707 Q T0613 190 CINIHHSFLPGFKG------AKPYHQAFDRGVKLI-GATAHYVTS 227 (287) Q Consensus 190 iiNiHpSlLP~f~G------~~~~~~a~~~Gvk~~-G~TvH~V~~ 227 (287) .+|.+.-+.+...| ....+.+.++|++++ |.=+|.... T Consensus 165 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gSDaH~~~~ 209 (247) T 2wje_A 165 QVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDG 209 (247) T ss_dssp EEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSEEECCBCCSSS T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 850056255337776574789999999978996999808998635 No 71 >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Probab=45.16 E-value=14 Score=16.35 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=21.2 Q ss_pred CCCCEEEEEEECCCCCCH--HHHHHHHHHHCCCCEEE Q ss_conf 999708999984999746--99999999975984877 Q T0613 1 MPHHQYVLTLSCPDRAGI--VSAVSTFLFENGQNILD 35 (287) Q Consensus 1 M~~~~~VLTv~gpDr~GI--VA~Vt~~Lae~g~NI~d 35 (287) |+..==|+.|+| .+|.. +|.+.+.|.++|-.+.- T Consensus 5 ~~~kmKIl~v~g-t~pe~i~~a~l~~~L~~~~~~v~~ 40 (375) T 3beo_A 5 MTERLKVMTIFG-TRPEAIKMAPLVLELQKHPEKIES 40 (375) T ss_dssp CSSCEEEEEEEC-SHHHHHHHHHHHHHHTTCTTTEEE T ss_pred CCCCCEEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEE T ss_conf 777888999963-468699999999999828999659 No 72 >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Probab=45.14 E-value=7.6 Score=18.22 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=44.0 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-H-HHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-8-999999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-E-TFSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~-~~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) ++++++++. +++.+.|.+.... + ....|-.+|+|..+= |.. .+-++ -.++.++.++. .++++.||++ T Consensus 54 ~~~~~ll~~------~iDaV~I~tp~~~H~~~~~~al~~GkhVl~EKPla-~~~~e-~~~l~~~a~~~--~~~~~v~~~~ 123 (323) T 1xea_A 54 TDYRDVLQY------GVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLA-ASAQE-CENLYELAEKH--HQPLYVGFNR 123 (323) T ss_dssp SSTTGGGGG------CCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSC-SSHHH-HHHHHHHHHHT--TCCEEEECGG T ss_pred CCHHHHHCC------CCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCC-CCHHH-HHHHHHHHHHC--CCCCEEEECC T ss_conf 889999558------99999960343211223321123221333034533-10566-41356667641--5531120112 Q ss_pred CCCHHHHH Q ss_conf 17978998 Q T0613 177 ILSDEMSA 184 (287) Q Consensus 177 iL~~~~~~ 184 (287) ...|.+-. T Consensus 124 Rf~p~~~~ 131 (323) T 1xea_A 124 RHIPLYNQ 131 (323) T ss_dssp GCCHHHHH T ss_pred CCCHHHHH T ss_conf 25999999 No 73 >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Probab=45.05 E-value=14 Score=16.34 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=35.8 Q ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 1790855689987078887976400157538898989999999998899999999988598389 Q T0613 213 RGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 213 ~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) +|..-++-++......++ |..+ .++|.++||+++|++++...+. +-+.-.+|...||+. T Consensus 20 ~~~~~~~~~i~V~v~~~~-Gk~i---~v~V~p~dTV~~lK~~I~~~~g-ip~~~qrLi~~Gk~L 78 (100) T 1uh6_A 20 RGSEGAATMIEVVCNDRL-GKKV---RVKCNTDDTIGDLKKLIAAQTG-TRWNKIVLKKWYTIF 78 (100) T ss_dssp CCCSSCCCEEEEEEECSS-SSCE---EEEEETTSBHHHHHHHHHHHHC-CCGGGCEEEETTEEC T ss_pred CCCCCCCCEEEEEEECCC-CCEE---EEEECCCCHHHHHHHHHHHHHC-CCHHHEEEEECCEEE T ss_conf 888888852899999999-9899---9998996949999999865667-780347878803894 No 74 >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Probab=44.56 E-value=14 Score=16.38 Aligned_cols=40 Identities=5% Similarity=0.005 Sum_probs=17.7 Q ss_pred CHHHHHHHHHCCCCCCEEEEEEEC------CHHHHHHHHHHCCCCEEEC Q ss_conf 779999999668999438999728------8678999999569959982 Q T0613 101 CLADILYRWRVGDLHMIPTAIVSN------HPRETFSGFDFGDIPFYHF 143 (287) Q Consensus 101 ~l~all~~~~~g~L~~ei~~Visn------~~~~~~~~a~~~~Ip~~~~ 143 (287) .+..+++.+.+.+ ..++++.+ ..+.-...|++.++|...- T Consensus 215 ~~~~~~~~L~~ak---rPvIivG~g~~~~~~~~~l~~lae~l~~Pv~tt 260 (616) T 2pan_A 215 QIEKAVEMLIQAE---RPVIVAGGGVINADAAALLQQFAELTSVPVIPT 260 (616) T ss_dssp HHHHHHHHHHTCS---SEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEC T ss_pred HHHHHHHHHHCCC---CEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEC T ss_conf 9999999997489---849998986032317999999999879898975 No 75 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* Probab=44.13 E-value=15 Score=16.25 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=6.4 Q ss_pred HCCCCEEEEE Q ss_conf 4489999981 Q T0613 163 QTHTDLVVLA 172 (287) Q Consensus 163 ~~~~DlivLA 172 (287) +.++|-+||+ T Consensus 171 ~~~~DtlILG 180 (255) T 2jfz_A 171 EILPEVIILG 180 (255) T ss_dssp CSCCSEEEEE T ss_pred HCCCCEEEEC T ss_conf 1389989991 No 76 >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Probab=43.96 E-value=1 Score=24.12 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=21.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC Q ss_conf 0157538898989999999998899999999988598389826 Q T0613 237 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNG 279 (287) Q Consensus 237 Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~ 279 (287) ...+.|.++||+.+|++++.+++ +...||+..||+.-+. T Consensus 19 ~~~v~v~~~~TV~~lK~~i~~~~----~~~qrLi~~Gk~L~dd 57 (95) T 1wia_A 19 EELAVARPEDTVGTLKSKYFPGQ----ESQMKLIYQGRLLQDP 57 (95) T ss_dssp EEEEEECSSSBHHHHHHHHSSST----TTTCEEEETTEECCCS T ss_pred EEEEEECCCCCHHHHHHHHHCCC----HHHEEEEECCEEEECC T ss_conf 99999899881999999987599----7778999899993367 No 77 >1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Probab=42.19 E-value=5.1 Score=19.37 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=11.9 Q ss_pred CCCEEEECCCCCCCCC Q ss_conf 7998983304278766 Q T0613 187 AGRCINIHHSFLPGFK 202 (287) Q Consensus 187 ~~riiNiHpSlLP~f~ 202 (287) .+-+=||||+|||.=. T Consensus 106 GGv~P~Ih~~Ll~kk~ 121 (131) T 1id3_C 106 GGVLPNIHQNLLPKKS 121 (131) T ss_dssp CCCCCCCCGGGSCCSC T ss_pred CCCCCCHHHHHHCCCC T ss_conf 7545425688711443 No 78 >2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structural protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A Probab=41.30 E-value=16 Score=15.96 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=61.1 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 01356342799980678777999999966899943899972886789999995699599828888887899999999998 Q T0613 83 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA 162 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~ 162 (287) ..--+++|++|+.+|.-=.- .....-+.+| .=||..-+... .+++|.......+-.++++....++.+.++ T Consensus 176 V~V~~~prV~iistGdElv~------~~~~~~~g~i--~dsN~~~l~al-l~~~G~~~~~~~~v~D~~~~i~~~l~~~~~ 246 (419) T 2fts_A 176 VEVNKFPVVAVMSTGNELLN------PEDDLLPGKI--RDSNRSTLLAT-IQEHGYPTINLGIVGDNPDDLLNALNEGIS 246 (419) T ss_dssp EEEECCCCEEEEEECTTEEC------TTSCCCTTCE--ECCHHHHHHHH-HHTTTCCEEEEEEECSSHHHHHHHHHHHHH T ss_pred EEEEECCEEEEEECCCCCCC------CCCCCCCCCE--ECCCHHHHHHH-HHHCCCCEEECCCCCCCHHHHHHHHHHHHH T ss_conf 08960878999915853356------6667789856--32514778999-997699503414017869999999999986 Q ss_pred HCCCCEEEEECCCCCCCHHHHH-----HCCCCE----EEECCC Q ss_conf 4489999981221017978998-----417998----983304 Q T0613 163 QTHTDLVVLARYMQILSDEMSA-----RLAGRC----INIHHS 196 (287) Q Consensus 163 ~~~~DlivLAgym~iL~~~~~~-----~~~~ri----iNiHpS 196 (287) + .|+|+..|=...=..+|+. ...+++ +++.|. T Consensus 247 ~--~DiiIttGG~S~G~~D~v~~~l~~~~~~~~~f~~v~ikPG 287 (419) T 2fts_A 247 R--ADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPG 287 (419) T ss_dssp H--CSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSC T ss_pred H--CCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEECC T ss_conf 3--4716721676788445699998650572799968888458 No 79 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=41.14 E-value=9.7 Score=17.52 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=46.6 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) +.+.++|.. . +.+++.+.+.... +. ...|-.+|+|.++= |.. .+-++. .++.++.++.+ +.+.-+|++ T Consensus 59 ~~~~ell~~---~--~~D~V~I~tp~~~H~~~~~~al~~gkhV~~EKPl~-~~~~ea-~~l~~~~~~~~--~~~~v~~~~ 129 (315) T 3c1a_A 59 SDWRSVVSA---P--EVEAVIIATPPATHAEITLAAIASGKAVLVEKPLT-LDLAEA-EAVAAAAKATG--VMVWVEHTQ 129 (315) T ss_dssp SSTHHHHTC---T--TCCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSC-SCHHHH-HHHHHHHHHHC--CCEEEECGG T ss_pred CCHHHHHCC---C--CCCEEEECCCHHHHHHHHHHHHHCCCCHHCCCCEE-CHHHHH-HHHHHHHHHCC--CCCCCCCCC T ss_conf 999999559---9--99889991887887999999985132310489803-204678-88777776503--443223101 Q ss_pred CCCHHHHH Q ss_conf 17978998 Q T0613 177 ILSDEMSA 184 (287) Q Consensus 177 iL~~~~~~ 184 (287) ...|.+.. T Consensus 130 r~~p~~~~ 137 (315) T 3c1a_A 130 LFNPAWEA 137 (315) T ss_dssp GGCHHHHH T ss_pred CCCHHHHH T ss_conf 26878999 No 80 >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Probab=41.14 E-value=16 Score=16.09 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=19.3 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 1575388989899999999988999 Q T0613 238 DVERISHRDTPADLVRKGRDIERRV 262 (287) Q Consensus 238 ~~v~V~~~dt~e~L~~r~~~~E~~~ 262 (287) -.+.|.+++|+.+|++++++.+..- T Consensus 20 ~~l~V~~~~TV~dLK~~I~~~~~i~ 44 (105) T 1v2y_A 20 MPVVVVQNATVLDLKKAIQRYVQLK 44 (105) T ss_dssp EEEEECTTCBHHHHHHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHHCCC T ss_conf 9789899686999999999987959 No 81 >3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} Probab=40.59 E-value=17 Score=15.89 Aligned_cols=108 Identities=9% Similarity=-0.077 Sum_probs=58.8 Q ss_pred CCCCEEEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEE Q ss_conf 5657689999996287-778989999999999987252010001356342799980678777999999966899943899 Q T0613 42 TESGHFFMRVVFNAAA-KVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTA 120 (287) Q Consensus 42 ~~~g~FfMri~~~~~~-~~~~~~~L~~al~~la~~~~~~i~i~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~ 120 (287) ..++..||++.+-.+. ...+...|+.++ .+++.++.++.+.+.-+ ..+..-.......+. T Consensus 18 ~~~~~~y~~IlVavD~~S~~s~~al~~A~-~lA~~~~a~l~lvhv~~---------~~~~~~~~~~~~~~~--------- 78 (155) T 3dlo_A 18 YFQGMIYMPIVVAVDKKSDRAERVLRFAA-EEARLRGVPVYVVHSLP---------GGGRTKDEDIIEAKE--------- 78 (155) T ss_dssp ----CCCCCEEEECCSSSHHHHHHHHHHH-HHHHHHTCCEEEEEEEC---------CSTTSCHHHHHHHHH--------- T ss_pred EEECCCCCCEEEEEECCCHHHHHHHHHHH-HHHHHCCCEEEEEEEEC---------CCCCCCHHHHHHHHH--------- T ss_conf 87347627589999795989999999999-99997499799999744---------887776667999999--------- Q ss_pred EEECCHHHHHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 97288678999999569959982-88888878999999999984489999981221 Q T0613 121 IVSNHPRETFSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYM 175 (287) Q Consensus 121 Visn~~~~~~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym 175 (287) .-......++..++++..- -....+ ...++++..++.++||||+...- T Consensus 79 ----~l~~~~~~~~~~~~~~~~~~~v~~g~---~~~~I~~~a~e~~adLIV~G~~~ 127 (155) T 3dlo_A 79 ----TLSWAVSIIRKEGAEGEEHLLVRGKE---PPDDIVDFADEVDAIAIVIGIRK 127 (155) T ss_dssp ----HHHHHHHHHHHTTCCEEEEEEESSSC---HHHHHHHHHHHTTCSEEEEECCE T ss_pred ----HHHHHHHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHCCCCEEEECCCC T ss_conf ----99999999998199958999993699---89999999998199899971678 No 82 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=39.78 E-value=17 Score=15.81 Aligned_cols=76 Identities=7% Similarity=-0.096 Sum_probs=47.7 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-H-HHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-8-999999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-E-TFSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~-~~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) ++++++|.. -+.+++.|.+.... + ....|-.+|.+.++= |.. .+- +.-.++.++.++. .+.++.||++ T Consensus 61 ~~~~ell~~-----~~iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKPla-~~~-~e~~~l~~~a~~~--~~~~~v~~~~ 131 (362) T 1ydw_A 61 GSYESLLED-----PEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVA-MNV-TEFDKIVDACEAN--GVQIMDGTMW 131 (362) T ss_dssp SSHHHHHHC-----TTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCS-SSH-HHHHHHHHHHHTT--TCCEEECCCG T ss_pred CCHHHHHCC-----CCCCEEEEECCCCCCCCCCCCCCCCCHHEECCCCCC-CHH-HHHHHHHHHHHCC--CCCCCCCCCC T ss_conf 889999559-----998889971233444432222344330000033421-003-6778899876313--4332111223 Q ss_pred CCCHHHHH Q ss_conf 17978998 Q T0613 177 ILSDEMSA 184 (287) Q Consensus 177 iL~~~~~~ 184 (287) ...|.+.. T Consensus 132 r~~p~~~~ 139 (362) T 1ydw_A 132 VHNPRTAL 139 (362) T ss_dssp GGSGGGTT T ss_pred CCHHHHHH T ss_conf 20256677 No 83 >2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8} Probab=39.62 E-value=17 Score=15.79 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=75.1 Q ss_pred CCCCCEEEEEECCCCCHHHHHH-----HH--HCCCCCCEEEEEEECCHHHHH-HHHHHCCCCEEECCCCCCCHHH----- Q ss_conf 5634279998067877799999-----99--668999438999728867899-9999569959982888888789----- Q T0613 86 ETRRKVMLLVSQSDHCLADILY-----RW--RVGDLHMIPTAIVSNHPRETF-SGFDFGDIPFYHFPVNKDTRRQ----- 152 (287) Q Consensus 86 ~~~~riavlvSg~g~~l~all~-----~~--~~g~L~~ei~~Visn~~~~~~-~~a~~~~Ip~~~~~~~~~~r~~----- 152 (287) +...-+.|.+|++|+++.-+.. .| +.|.-..+-.+|++|.....+ ..+++.+++...+|-.-..|-. T Consensus 138 d~~~TlfiviSKSG~T~ETl~~~~~~~~~l~~~~~~~~~~~ivit~~~~~~l~~~a~~~~~~~f~~~~~IGGRfSv~S~v 217 (460) T 2q8n_A 138 DPKTTLFNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDPEKGFLRKLVKEEGFRSLEVPPGVGGRFSVLTPV 217 (460) T ss_dssp CGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECSSSSHHHHHHHHHTCEEEECCTTCCGGGCTTSHH T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 96727999983898977899789999999997488726538997676146677564886455423897778750466745 Q ss_pred ------------------------------------HHHH-HHHHHHHCCCCEEEEECCC---CCCCHHHHHHC---CCC Q ss_conf ------------------------------------9999-9999984489999981221---01797899841---799 Q T0613 153 ------------------------------------QEAA-ITALIAQTHTDLVVLARYM---QILSDEMSARL---AGR 189 (287) Q Consensus 153 ------------------------------------~e~~-l~~~l~~~~~DlivLAgym---~iL~~~~~~~~---~~r 189 (287) .-.+ +.-.....+-..-|+.-|- +-++..+-+-| -|| T Consensus 218 GLlpa~~~G~di~~~l~ga~~~~~~~~~~~~~~n~~~~~a~~~~~~~~~~~~~~vi~pY~~~L~~f~~w~qQL~~ESlGK 297 (460) T 2q8n_A 218 GLLSAMAEGIDIDELHEGAKDAFEKSMKENILENPAAMIALTHYLYLNKGKSISVMMAYSNRMIYLVDWYRQLWAESLGK 297 (460) T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHHTTCCEEEEEESSGGGHHHHHHHHHHHHHHHCC T ss_pred CHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC T ss_conf 20457652725999862368887751011021025889987553230123452799513010301799998776460488 Q ss_pred EEEEC-----CCCCC----CCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEE Q ss_conf 89833-----04278----76663169999981790855689987078887976400 Q T0613 190 CINIH-----HSFLP----GFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQ 237 (287) Q Consensus 190 iiNiH-----pSlLP----~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q 237 (287) -.|-. -...| .-.+.|.+-|-+..|-+..=+|.=.|.+ .+....+.+ T Consensus 298 ~~~~~g~~v~~g~~p~g~~Gt~dQHS~~Ql~~qG~~d~~~~fi~v~~-~~~~~~~~~ 353 (460) T 2q8n_A 298 RYNLKGEEVFTGQTPVKALGATDQHSQIQLYNEGPNDKVITFLRVEN-FDREIVIPE 353 (460) T ss_dssp SBCTTSCBCCCCCEEEEEETTGGGGTTHHHHHHSCSCEEEEEEEECC-CSSCCBCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECC-CCCHHHHHH T ss_conf 76778886645654775778850124311202688765346787436-420111123 No 84 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Probab=39.23 E-value=18 Score=15.75 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=14.9 Q ss_pred EEEEECCCCCCHHH-HHHHHHHHCCCCEEECC Q ss_conf 99998499974699-99999997598487711 Q T0613 7 VLTLSCPDRAGIVS-AVSTFLFENGQNILDAQ 37 (287) Q Consensus 7 VLTv~gpDr~GIVA-~Vt~~Lae~g~NI~dis 37 (287) -|.+.|- |-.+ .......+.|....=++ T Consensus 21 kIlIlG~---Gqlgr~la~AAk~lG~~viv~d 49 (433) T 2dwc_A 21 KILLLGS---GELGKEIAIEAQRLGVEVVAVD 49 (433) T ss_dssp EEEEESC---SHHHHHHHHHHHHTTCEEEEEE T ss_pred EEEEECC---CHHHHHHHHHHHHCCCEEEEEE T ss_conf 9999997---8999999999998699899997 No 85 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A* Probab=39.05 E-value=18 Score=15.73 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=5.9 Q ss_pred HHHHHHHCCCCEEEEE Q ss_conf 9999984489999981 Q T0613 157 ITALIAQTHTDLVVLA 172 (287) Q Consensus 157 l~~~l~~~~~DlivLA 172 (287) +.+.+.+.++|+||+| T Consensus 54 ~~~~L~~~~~~~Ivia 69 (254) T 1b73_A 54 CAGFLKDKGVDIIVVA 69 (254) T ss_dssp HHHHHHTTTCSEEEEC T ss_pred HHHHHHHCCCCEEEEE T ss_conf 9999997699999994 No 86 >2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} Probab=38.79 E-value=18 Score=15.71 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=14.7 Q ss_pred CCCCCCCCEEEEEECCC--CCHHHHHHH Q ss_conf 01356342799980678--777999999 Q T0613 83 RDRETRRKVMLLVSQSD--HCLADILYR 108 (287) Q Consensus 83 ~~~~~~~riavlvSg~g--~~l~all~~ 108 (287) +..+++++|+||=||-| |=|.+|... T Consensus 16 ~~~~~~p~IgvFDSGvGGltVl~~l~~~ 43 (285) T 2jfn_A 16 TPSEPRPTVLVFDSGVGGLSVYDEIRHL 43 (285) T ss_dssp ----CEEEEEEEESSSTHHHHHHHHHHH T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHH T ss_conf 8889999389984883589999999997 No 87 >2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Probab=38.67 E-value=6.3 Score=18.75 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=11.3 Q ss_pred CEEEECCCCCCCCCC Q ss_conf 989833042787666 Q T0613 189 RCINIHHSFLPGFKG 203 (287) Q Consensus 189 riiNiHpSlLP~f~G 203 (287) -+=||||+|||+=.+ T Consensus 106 v~P~Ih~~ll~kk~~ 120 (123) T 2nqb_C 106 VLPNIQAVLLPKKTE 120 (123) T ss_dssp CCCCCCGGGSSCC-- T ss_pred CCCCCCHHHCCCCCC T ss_conf 068625866688655 No 88 >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Probab=37.84 E-value=19 Score=15.61 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=31.9 Q ss_pred CHHHHHHHHHCCCCCCEEEEE-EECCHH---HHHHHHHHCCCCEEECCCCCC----CHH--------HHHHHHHHHHHHC Q ss_conf 779999999668999438999-728867---899999956995998288888----878--------9999999999844 Q T0613 101 CLADILYRWRVGDLHMIPTAI-VSNHPR---ETFSGFDFGDIPFYHFPVNKD----TRR--------QQEAAITALIAQT 164 (287) Q Consensus 101 ~l~all~~~~~g~L~~ei~~V-isn~~~---~~~~~a~~~~Ip~~~~~~~~~----~r~--------~~e~~l~~~l~~~ 164 (287) .++.+++.+...+-|.-++.- +.+... .....|++.++|+..-...+. +-. .........++ T Consensus 278 ~v~~~~~~L~~AkrPvIvvG~G~~~~~~~~~~l~~Lae~l~~PV~tt~~~~g~~~~~~p~~~g~~G~~~~~~a~~~~~-- 355 (677) T 1t9b_A 278 SINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQ-- 355 (677) T ss_dssp HHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHH-- T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHC-- T ss_conf 999999999837798798326643004689999999872141279866667766875640122145423588998771-- Q ss_pred CCCEEEEEC Q ss_conf 899999812 Q T0613 165 HTDLVVLAR 173 (287) Q Consensus 165 ~~DlivLAg 173 (287) ++|+|+.-| T Consensus 356 ~aDlvl~lG 364 (677) T 1t9b_A 356 NADLIIAVG 364 (677) T ss_dssp HCSEEEEES T ss_pred CCCEEEEEC T ss_conf 599899989 No 89 >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393, structural genomics, JCSG, joint center for structural genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Probab=37.63 E-value=19 Score=15.59 Aligned_cols=103 Identities=11% Similarity=0.012 Sum_probs=54.2 Q ss_pred HCCCCCCCCEE-EEEECCCCCH-----------------HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH-CCCCEEE Q ss_conf 00135634279-9980678777-----------------999999966899943899972886789999995-6995998 Q T0613 82 MRDRETRRKVM-LLVSQSDHCL-----------------ADILYRWRVGDLHMIPTAIVSNHPRETFSGFDF-GDIPFYH 142 (287) Q Consensus 82 i~~~~~~~ria-vlvSg~g~~l-----------------~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~-~~Ip~~~ 142 (287) +++...++++| ||+.|.|+=| +-.|++...-..--+|.+|. ++...... .+. ..-+... T Consensus 6 ~~~~~~~M~IAIILAaG~gtRm~~~~pK~l~~i~gkplI~~~i~~~~~~~~i~~IiVv~-~~~~~~~~-~~~~~~~~~i~ 83 (234) T 1vpa_A 6 IHHHHHHMNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVT-RREWFEVV-EKRVFHEKVLG 83 (234) T ss_dssp -----CCCEEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEE-CGGGHHHH-HTTCCCTTEEE T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCCCCCCC-CCHHHEEE-ECCCCCCCCCC T ss_conf 44456877089994687762389799843707899998999999999687845223223-51110000-00023444431 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCHHHHHHC Q ss_conf 288888878999999999984489999-98122101797899841 Q T0613 143 FPVNKDTRRQQEAAITALIAQTHTDLV-VLARYMQILSDEMSARL 186 (287) Q Consensus 143 ~~~~~~~r~~~e~~l~~~l~~~~~Dli-vLAgym~iL~~~~~~~~ 186 (287) +.....++...-...+..+...+.|.+ ++.|=+-.+++++++.. T Consensus 84 ~~~~~~~~~~s~~~~l~~~~~~~~~~v~i~~~d~P~i~~~~i~~l 128 (234) T 1vpa_A 84 IVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEV 128 (234) T ss_dssp EEECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH T ss_conf 123455432007899999973499738998523345517788777 No 90 >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Probab=37.13 E-value=15 Score=16.25 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=34.5 Q ss_pred HHHHHHHCCCCEEECCCCCCC-HH-----------HH-----HHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHCC-C Q ss_conf 999999569959982888888-78-----------99-----9999999984489999981221--017978998417-9 Q T0613 129 TFSGFDFGDIPFYHFPVNKDT-RR-----------QQ-----EAAITALIAQTHTDLVVLARYM--QILSDEMSARLA-G 188 (287) Q Consensus 129 ~~~~a~~~~Ip~~~~~~~~~~-r~-----------~~-----e~~l~~~l~~~~~DlivLAgym--~iL~~~~~~~~~-~ 188 (287) -.+.+++.++|+..-+..+.. .+ .. .....+.++ +.|+|+.-|.. ....+.+...+. . T Consensus 236 l~~lae~l~~pV~~t~~~~~~~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~--~~D~il~iG~~~~~~~~~~~~~~~~~~ 313 (573) T 2iht_A 236 IRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFA--PVDLVLTVGYDYAEDLRPSMWQKGIEK 313 (573) T ss_dssp HHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHT--TCCEEEEETCCGGGCCCHHHHCCSSCC T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 999999628889982267888887765211443333456542478997513--667699946753013565433345431 Q ss_pred CEEEECCCCC Q ss_conf 9898330427 Q T0613 189 RCINIHHSFL 198 (287) Q Consensus 189 riiNiHpSlL 198 (287) +++.+++.-- T Consensus 314 ~~~~i~~d~~ 323 (573) T 2iht_A 314 KTVRISPTVN 323 (573) T ss_dssp EEEEEESSCC T ss_pred CCCCCCCCHH T ss_conf 0002579878 No 91 >2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Probab=36.02 E-value=7.3 Score=18.33 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=12.7 Q ss_pred CCCEEEECCCCCCCCCC Q ss_conf 79989833042787666 Q T0613 187 AGRCINIHHSFLPGFKG 203 (287) Q Consensus 187 ~~riiNiHpSlLP~f~G 203 (287) .+-+=||||+|||+=.+ T Consensus 125 GGVlP~Ih~~LlpKk~~ 141 (149) T 2f8n_K 125 GGVLPNIQAVLLPKKTE 141 (149) T ss_dssp CCCCCCCCGGGSCC--- T ss_pred CCCCCCCCHHHCCCCCC T ss_conf 86167507866587656 No 92 >2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* Probab=35.91 E-value=20 Score=15.41 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=78.4 Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCH--HHHHHHHHHCCCCEEECCCCCCCHHH-------HHH Q ss_conf 356342799980678777999999966899943899972886--78999999569959982888888789-------999 Q T0613 85 RETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHP--RETFSGFDFGDIPFYHFPVNKDTRRQ-------QEA 155 (287) Q Consensus 85 ~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~--~~~~~~a~~~~Ip~~~~~~~~~~r~~-------~e~ 155 (287) .+.|+||+||.|-. |==+.-|+=++...=.-+|.++.+++. +.-...+.++..++.++.-.. .... -.. T Consensus 9 ~~~kkkI~ILGSTG-SIG~stL~VI~~~~~~f~V~~Lsa~~~n~~~L~~q~~~f~p~~v~i~d~~-~~~~~~~~~~~g~~ 86 (413) T 2c82_A 9 ADGRLRVVVLGSTG-SIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEH-AAQRVGDIPYHGSD 86 (413) T ss_dssp --CCEEEEEESTTS-HHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHH-HHHHHCCCSEESTT T ss_pred CCCCCEEEEECCCC-HHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEECCHH-HHHHHCCCCCCCHH T ss_conf 26997799989797-99999999998395760999999787229999999999699989987989-99984232215837 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECC--CCCCC Q ss_conf 9999998448999998122101797899841799898330427876663169999981790855689987078--88797 Q T0613 156 AITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSA--LDEGP 233 (287) Q Consensus 156 ~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~--lD~Gp 233 (287) .+.+.+...++|+++.| +..|.|..|--.|+.+|.++ -..+.| +=+|+ T Consensus 87 ~l~~~~~~~~~Divv~A-------------------------I~G~aGL~pt~~Ai~~gk~I-----aLANKEslV~aG~ 136 (413) T 2c82_A 87 AATRLVEQTEADVVLNA-------------------------LVGALGLRPTLAALKTGARL-----ALANKESLVAGGS 136 (413) T ss_dssp HHHHHHHHCCCSEEEEC-------------------------CCSGGGHHHHHHHHHTTCEE-----EECCHHHHHTTHH T ss_pred HHHHHHHHCCCCCEEEC-------------------------CCCCCCCHHHHHHHHCCCEE-----EEECHHHHHHHHH T ss_conf 89999863210113331-------------------------01125745799999579849-----9964389996899 Q ss_pred EEEEEEE--ECCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6400157--5388989899999999988999999999 Q T0613 234 IIDQDVE--RISHRDTPADLVRKGRDIERRVLSRALH 268 (287) Q Consensus 234 II~Q~~v--~V~~~dt~e~L~~r~~~~E~~~l~~ai~ 268 (287) +|...+- .+.|=|| ||-++-+.++ T Consensus 137 li~~~~~~~~IiPvDS-----------EH~ai~q~l~ 162 (413) T 2c82_A 137 LVLRAARPGQIVPVDS-----------EHSALAQCLR 162 (413) T ss_dssp HHHHHCCTTCEEECSH-----------HHHHHHHHGG T ss_pred HHHHHHCCCEEEECCC-----------HHHHHHHHHH T ss_conf 9986412432575583-----------1789999875 No 93 >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Probab=35.37 E-value=20 Score=15.36 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=28.6 Q ss_pred CCCCEE------EEEEECCCCCCHHHHHHHHHHHCCCCEE Q ss_conf 999708------9999849997469999999997598487 Q T0613 1 MPHHQY------VLTLSCPDRAGIVSAVSTFLFENGQNIL 34 (287) Q Consensus 1 M~~~~~------VLTv~gpDr~GIVA~Vt~~Lae~g~NI~ 34 (287) |+|.+| +..|+|.. -||=.+++..|++.|+|+. T Consensus 1 m~m~~~~dL~gKvalITGas-~GIG~aia~~la~~Ga~Vi 39 (262) T 3ksu_A 1 MSLTKYHDLKNKVIVIAGGI-KNLGALTAKTFALESVNLV 39 (262) T ss_dssp ---CCCSCCTTCEEEEETCS-SHHHHHHHHHHTTSSCEEE T ss_pred CCCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHCCCEEE T ss_conf 99887789899989993898-7899999999998699899 No 94 >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Probab=35.24 E-value=20 Score=15.34 Aligned_cols=83 Identities=11% Similarity=-0.068 Sum_probs=45.9 Q ss_pred CCCEEEEEECCCCCHH--------------------HHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCC Q ss_conf 3427999806787779--------------------99999966899943899972886789999995699599828888 Q T0613 88 RRKVMLLVSQSDHCLA--------------------DILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNK 147 (287) Q Consensus 88 ~~riavlvSg~g~~l~--------------------all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~ 147 (287) ++|..||+.|.|+=|. -.|++...-.. -+|.+|++...+.--...+++++.+.+.+... T Consensus 25 ~mkaiIlAaG~GtRm~~~t~~~PK~Ll~I~gkpli~~~i~~l~~~gi-~~Iiiv~g~~~e~i~~~~~~~~i~ii~~~~~~ 103 (254) T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGI-NDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYA 103 (254) T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTC-CCEEEEECTTGGGGTHHHHHHCCEEEECTTTT T ss_pred CCCEEEECCCCCCCCCCHHCCCCEEEEEECCEEHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 72389989867656872106988025389985899999999998599-88999335432112222234685322221220 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 88789999999999844899999812 Q T0613 148 DTRRQQEAAITALIAQTHTDLVVLAR 173 (287) Q Consensus 148 ~~r~~~e~~l~~~l~~~~~DlivLAg 173 (287) .... -..+.......+-|++|+.+ T Consensus 104 ~~gt--~~sl~~a~~~i~~~~vi~~d 127 (254) T 1jyk_A 104 DYNN--FYSLYLVKEELANSYVIDAD 127 (254) T ss_dssp TSCT--HHHHHTTGGGCTTEEEEETT T ss_pred CCCC--CCCCCCHHHHHHCCCCCCCC T ss_conf 2233--23322103343012223453 No 95 >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Probab=33.48 E-value=22 Score=15.16 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=41.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 99998499974699999999975984877111024565768999999628777898999999999998725 Q T0613 7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT 77 (287) Q Consensus 7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~ 77 (287) +..|+|-. .||=..++..|++.|+|++-.+..........+ +..|. .+.+++++.++++.+++| T Consensus 10 ~~lITGas-~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~--~~~Dv----~~~~~v~~~~~~~~~~~G 73 (264) T 2dtx_A 10 VVIVTGAS-MGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH--IECDV----TNPDQVKASIDHIFKEYG 73 (264) T ss_dssp EEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEE--EECCT----TCHHHHHHHHHHHHHHHS T ss_pred EEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCE--EEEEC----CCHHHHHHHHHHHHHHHC T ss_conf 89993888-789999999999869999998379744577528--99727----999999999999999819 No 96 >1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A Probab=33.45 E-value=22 Score=15.15 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=49.2 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 01356342799980678777999999966899943899972886789999995699599828888887899999999998 Q T0613 83 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA 162 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~ 162 (287) ..--+++|++|+.+|.-=.-..--...+.|+ ..=||..-+.. ..+++|.......+-.++.+...+++.+.++ T Consensus 177 V~V~~~prV~iisTGdELv~~~~~~~~~~g~------i~dsN~~~l~a-~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~ 249 (396) T 1wu2_A 177 VPVKVKPKVGIIITGSELIEEPSEEGFKEGK------IVETNSIMLQG-LVEKFFGEPILYGVLPDDESIIKETLEKAKN 249 (396) T ss_dssp EEEECCCEEEEEEECTTEESSCCHHHHHTTC------EECCHHHHHHH-HHHHTTCEEEEEEEECSCHHHHTTHHHHHHH T ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCCC------EECCCHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 5223786389994053100200235788894------74358788899-9985210223322224305666566554354 Q ss_pred HCCCCEEEEECCCCC Q ss_conf 448999998122101 Q T0613 163 QTHTDLVVLARYMQI 177 (287) Q Consensus 163 ~~~~DlivLAgym~i 177 (287) +.|+|+..|=... T Consensus 250 --~~DivittGG~S~ 262 (396) T 1wu2_A 250 --ECDIVLITGGSAF 262 (396) T ss_dssp --CSEEEECC----- T ss_pred --HCCEEEECCCCCC T ss_conf --3356763277688 No 97 >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Probab=31.93 E-value=8.8 Score=17.78 Aligned_cols=38 Identities=3% Similarity=-0.103 Sum_probs=15.8 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 575388989899999999988999999999885983898 Q T0613 239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVIL 277 (287) Q Consensus 239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v 277 (287) .+.|.+++|+++|++.++..+. +-+...+|+..||+.- T Consensus 25 ~l~V~~~~tV~~lK~~Ie~~~g-ip~~~QrLi~~Gk~L~ 62 (102) T 1v5o_A 25 SLQVNPDFELSNFRVLCELESG-VPAEEAQIVYMEQLLT 62 (102) T ss_dssp EEEECTTCBHHHHHHHHHHHTC-CCGGGBCEEETTEEEC T ss_pred EEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEECCEEEE T ss_conf 9997980619999999988868-8840379874883843 No 98 >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Probab=31.82 E-value=23 Score=14.98 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=11.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 999984999746999999999759 Q T0613 7 VLTLSCPDRAGIVSAVSTFLFENG 30 (287) Q Consensus 7 VLTv~gpDr~GIVA~Vt~~Lae~g 30 (287) -+.+.|.=.+|- .+...|++.+ T Consensus 25 kIlvlGaG~vG~--~~~~~L~~~~ 46 (467) T 2axq_A 25 NVLLLGSGFVAQ--PVIDTLAAND 46 (467) T ss_dssp EEEEECCSTTHH--HHHHHHHTST T ss_pred EEEEECCCHHHH--HHHHHHHHCC T ss_conf 199989888999--9999998289 No 99 >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Probab=31.27 E-value=24 Score=14.92 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=53.2 Q ss_pred HCCCCCCCCEEEEEECCC--CCHHHHHHHHHCCCCC-CEEEEEEECCH---H----H--HHHHHHHCCCCEEECCCC--- Q ss_conf 001356342799980678--7779999999668999-43899972886---7----8--999999569959982888--- Q T0613 82 MRDRETRRKVMLLVSQSD--HCLADILYRWRVGDLH-MIPTAIVSNHP---R----E--TFSGFDFGDIPFYHFPVN--- 146 (287) Q Consensus 82 i~~~~~~~riavlvSg~g--~~l~all~~~~~g~L~-~ei~~Visn~~---~----~--~~~~a~~~~Ip~~~~~~~--- 146 (287) +...+ .|++|-+||.- ..|-.++..++. ..+ -.+.++.-||. . + ....++..|||+++.... T Consensus 20 l~~~~--~kilvavSGG~DS~~Ll~~l~~~~~-~~~~~~v~~~~v~h~~r~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~ 96 (317) T 1wy5_A 20 IFSGE--RRVLIAFSGGVDSVVLTDVLLKLKN-YFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRA 96 (317) T ss_dssp SCSSC--CEEEEECCSSHHHHHHHHHHHHSTT-TTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHH T ss_pred CCCCC--CEEEEEEECHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 67996--9699998081999999999999998-77998299999728999655999999999999722000121221111 Q ss_pred -----CCCHHHHH-----HHHHHHHHHCCCCEEEEEC Q ss_conf -----88878999-----9999999844899999812 Q T0613 147 -----KDTRRQQE-----AAITALIAQTHTDLVVLAR 173 (287) Q Consensus 147 -----~~~r~~~e-----~~l~~~l~~~~~DlivLAg 173 (287) ..+-+..- ..+.+..++++.+.|++|= T Consensus 97 ~~~~~~~~~e~~aR~~Ry~~l~~~a~~~~~~~i~~gH 133 (317) T 1wy5_A 97 FAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAH 133 (317) T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCC T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 1036752078888999998742201134456145422 No 100 >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Probab=31.26 E-value=3 Score=20.89 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=18.7 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 575388989899999999988999999999885983898 Q T0613 239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVIL 277 (287) Q Consensus 239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v 277 (287) .+.|.++||+.+|++++.+.+.. -+...+|+..|++.. T Consensus 28 ~l~V~~~~TV~~lK~~I~~~~gi-p~~~QrLi~~Gk~L~ 65 (94) T 2kan_A 28 TVEVDRTETVSSLKDKIHIVENT-PIKRMQLYYSGIELA 65 (94) T ss_dssp EEEECTTCBHHHHHHHHHHHSSS-CTTTEEEEETTEEEC T ss_pred EEEECCCCHHHHHHHHHHHHHCC-CCCCEEEEECCEEEC T ss_conf 99978818599999999998499-945089998998933 No 101 >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Probab=30.98 E-value=24 Score=14.89 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=17.8 Q ss_pred CHHHHHHHHHCCCCCCEEEEEEECC------HHHHHHHHHHCCCCEEECC Q ss_conf 7799999996689994389997288------6789999995699599828 Q T0613 101 CLADILYRWRVGDLHMIPTAIVSNH------PRETFSGFDFGDIPFYHFP 144 (287) Q Consensus 101 ~l~all~~~~~g~L~~ei~~Visn~------~~~~~~~a~~~~Ip~~~~~ 144 (287) .+..+++.++..+-| ++++... .+.....|++.++|+..-+ T Consensus 202 ~l~~~~~~l~~akrp---vIi~G~~~~~~~a~~~l~~Lae~lg~pv~~t~ 248 (568) T 2c31_A 202 AIARAADLIKNAKRP---VIMLGKGAAYAQCDDEIRALVEETGIPFLPMG 248 (568) T ss_dssp HHHHHHHHHHTCSSE---EEEECHHHHHHTCHHHHHHHHHHHTCCEEECG T ss_pred HHHHHHHHHHHCCCC---EEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999998616895---89996231134478999887874186512220 No 102 >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Probab=30.67 E-value=24 Score=14.85 Aligned_cols=50 Identities=10% Similarity=-0.038 Sum_probs=24.4 Q ss_pred EECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHH-HHHHHHCCCCEEECC Q ss_conf 80678777999999966899943899972886789-999995699599828 Q T0613 95 VSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRET-FSGFDFGDIPFYHFP 144 (287) Q Consensus 95 vSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~-~~~a~~~~Ip~~~~~ 144 (287) .+.....+..++..++..+-+.-+..--+++.... .+.|++.++|+...+ T Consensus 184 ~~~~~~~i~~~~~~l~~a~~pvii~G~g~~~~~~~l~~lae~~~~pv~~~~ 234 (549) T 3eya_A 184 VTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHAL 234 (549) T ss_dssp EECCHHHHHHHHHHHHTCCSEEEEECGGGTTCHHHHHHHHHHHTCCEEECG T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 322489999999986404650899446543048999986764148743234 No 103 >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Probab=30.32 E-value=24 Score=14.81 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.0 Q ss_pred CCEEEEECCCCC Q ss_conf 999998122101 Q T0613 166 TDLVVLARYMQI 177 (287) Q Consensus 166 ~DlivLAgym~i 177 (287) -.++|.+||.-. T Consensus 176 ~~i~Vv~GF~g~ 187 (449) T 2j0w_A 176 EGLVITQGFIGS 187 (449) T ss_dssp HSEEEEESSEEE T ss_pred CCEEEECCCEEC T ss_conf 766880374015 No 104 >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Probab=30.06 E-value=25 Score=14.79 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=34.0 Q ss_pred CCCCCEEEEEEC-CCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC Q ss_conf 563427999806-7877799999996689994389997288678999999569959982888888789999999999844 Q T0613 86 ETRRKVMLLVSQ-SDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQT 164 (287) Q Consensus 86 ~~~~riavlvSg-~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~ 164 (287) .+++|+.+-.-+ ..|.+...+-+. ..+.+|....++...- + -+++.+.+.++ T Consensus 16 ~rr~rvl~a~~~~D~H~~G~~~v~~----------------------~l~~~G~eVi~lG~~~-~----~e~~v~~~~~~ 68 (161) T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVAR----------------------ALRDAGFEVVYTGLRQ-T----PEQVAMAAVQE 68 (161) T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHH----------------------HHHHTTCEEECCCSBC-C----HHHHHHHHHHT T ss_pred CCCCEEEEECCCCCHHHHHHHHHHH----------------------HHHHCCCEEEECCCCC-C----HHHHHHHHHHC T ss_conf 8899899973798634888999999----------------------9997893799899888-9----99999999854 Q ss_pred CCCEEEEECCC Q ss_conf 89999981221 Q T0613 165 HTDLVVLARYM 175 (287) Q Consensus 165 ~~DlivLAgym 175 (287) ++|+|.|..-| T Consensus 69 ~~d~V~lS~~~ 79 (161) T 2yxb_A 69 DVDVIGVSILN 79 (161) T ss_dssp TCSEEEEEESS T ss_pred CCCEEEEECCC T ss_conf 99899996466 No 105 >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Probab=29.61 E-value=25 Score=14.74 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=5.9 Q ss_pred HHHHHCCCCEEEEE Q ss_conf 99984489999981 Q T0613 159 ALIAQTHTDLVVLA 172 (287) Q Consensus 159 ~~l~~~~~DlivLA 172 (287) +..++++.|.|++| T Consensus 113 ~~~~~~~~~~i~~a 126 (464) T 3a2k_A 113 ELMEKHQAGYVAVG 126 (464) T ss_dssp HHHHTTTCCEEECC T ss_pred CCCCCCCCCEEEEE T ss_conf 22312555348851 No 106 >2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6 Probab=29.58 E-value=23 Score=14.99 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=6.6 Q ss_pred CCCCHHHHHHHHHHHCC Q ss_conf 99746999999999759 Q T0613 14 DRAGIVSAVSTFLFENG 30 (287) Q Consensus 14 Dr~GIVA~Vt~~Lae~g 30 (287) .+.-...++...+.+.+ T Consensus 16 ~~~~~l~~l~~~~~~~~ 32 (260) T 2yvt_A 16 ERFDLLPKLKGVIAEKQ 32 (260) T ss_dssp TCGGGHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHHCC T ss_conf 99899999999988739 No 107 >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Probab=29.48 E-value=25 Score=14.72 Aligned_cols=81 Identities=10% Similarity=-0.063 Sum_probs=43.8 Q ss_pred EEEEECCCC-CHHHHHHHHHCCCCCCEEEEEEECCHH-H-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 999806787-779999999668999438999728867-8-9999995699599828888887899999999998448999 Q T0613 92 MLLVSQSDH-CLADILYRWRVGDLHMIPTAIVSNHPR-E-TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDL 168 (287) Q Consensus 92 avlvSg~g~-~l~all~~~~~g~L~~ei~~Visn~~~-~-~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dl 168 (287) .++.+|+|| .+.+++...-...=+.+-++++.|-.- . -...|+++|.....+...+......-+++.+.+.+.++++ T Consensus 61 ~v~~tgsgT~a~e~~~~~l~~~~~~gd~vlv~~~g~~~~~~~~~a~~~g~~~~~v~~~~~g~~~~~~~l~~~i~~~~~~~ 140 (385) T 2bkw_A 61 PFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGA 140 (385) T ss_dssp EEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSE T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE T ss_conf 99993868999999999863223799826898420355677777665431133322345787576467999740577439 Q ss_pred EEEE Q ss_conf 9981 Q T0613 169 VVLA 172 (287) Q Consensus 169 ivLA 172 (287) |++. T Consensus 141 v~~~ 144 (385) T 2bkw_A 141 VTVT 144 (385) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9996 No 108 >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Probab=29.32 E-value=25 Score=14.70 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=23.3 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHCCCCEEECC Q ss_conf 6787779999999668999438999728867---89999995699599828 Q T0613 97 QSDHCLADILYRWRVGDLHMIPTAIVSNHPR---ETFSGFDFGDIPFYHFP 144 (287) Q Consensus 97 g~g~~l~all~~~~~g~L~~ei~~Visn~~~---~~~~~a~~~~Ip~~~~~ 144 (287) .....+..+.+....-+-|.-++.....+.+ .....+++.++|+...+ T Consensus 192 ~~~~~i~~~~~~L~~a~rP~ii~G~~~~~~~~~~~l~~lae~~~~pv~~~~ 242 (566) T 1ozh_A 192 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTY 242 (566) T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECG T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECC T ss_conf 998999999999975439864578765451668999999986089711023 No 109 >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Probab=29.19 E-value=25 Score=14.69 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=91.9 Q ss_pred HHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEE--CC Q ss_conf 9999999759848771110245657689999996287778989999999999987252010001356342799980--67 Q T0613 21 AVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVS--QS 98 (287) Q Consensus 21 ~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i~~~~~~~riavlvS--g~ 98 (287) .+-..|-+..+++.-..++.+..... .....+.+++.+.. -++.+..+.....++++..|+. |. T Consensus 50 eLe~~LI~aDVg~~~a~~ii~~lk~~-----------~~~~~~~l~~~~~~---~~~~~~~l~~~~~~p~vi~~vG~~G~ 115 (306) T 1vma_A 50 ELEELLIQADVGVETTEYILERLEEK-----------DGDALESLKEIILE---ILNFDTKLNVPPEPPFVIMVVGVNGT 115 (306) T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTC-----------CSCHHHHHHHHHHH---HTCSCCCCCCCSSSCEEEEEECCTTS T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH---HCCCCCHHHHCCCCCEEEEECCCCCC T ss_conf 99999998689889999999998764-----------45788999876443---20332102320344238874155566 Q ss_pred C--CCHHHHHHHHHCCCCCCEEEEEEEC--CHHHH--HH-HHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 8--7779999999668999438999728--86789--99-9995699599828888-88789999999999844899999 Q T0613 99 D--HCLADILYRWRVGDLHMIPTAIVSN--HPRET--FS-GFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHTDLVV 170 (287) Q Consensus 99 g--~~l~all~~~~~g~L~~ei~~Visn--~~~~~--~~-~a~~~~Ip~~~~~~~~-~~r~~~e~~l~~~l~~~~~Dliv 170 (287) | ++..-|....+.. +-.+.++-++ |+.+. +. .|++.++|++..+... +....++.......+.+++=+|= T Consensus 116 GKTTt~aKLA~~~~~~--~~~v~l~~~Dt~R~~a~eQL~~~a~~~~v~~~~~~~~~d~~~i~~~~~~~~~~~~~D~viID 193 (306) T 1vma_A 116 GKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIID 193 (306) T ss_dssp SHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEE T ss_pred CCCHHHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 7641699999999857--98479983365331057788888751475421567786689888999999998699979985 Q ss_pred EECCCCCCCHHHHHHCCCCEEEECC---------CC--CCCCCCCCHHHHHHHC--CCEEEEEEEEEEECCCCCCCE Q ss_conf 8122101797899841799898330---------42--7876663169999981--790855689987078887976 Q T0613 171 LARYMQILSDEMSARLAGRCINIHH---------SF--LPGFKGAKPYHQAFDR--GVKLIGATAHYVTSALDEGPI 234 (287) Q Consensus 171 LAgym~iL~~~~~~~~~~riiNiHp---------Sl--LP~f~G~~~~~~a~~~--Gvk~~G~TvH~V~~~lD~GpI 234 (287) .||-++.= .+..+.+. ++.++.. .+ |++-.|.+.+.++... .+.++|+-.--+|+.-..|.+ T Consensus 194 TAGR~~~d-~~lm~el~-~i~~~~~~~~~~~p~e~~LVlda~~g~~~~~~~~~f~~~~~i~glIlTKlD~~~~~G~~ 268 (306) T 1vma_A 194 TAGRLHTK-KNLMEELR-KVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGIT 268 (306) T ss_dssp ECCCCSCH-HHHHHHHH-HHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHH T ss_pred CHHHCCHH-HHHHHHHH-HHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH T ss_conf 41002101-67788899-99987642166675035663020127561676898875379987999703588950499 No 110 >1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Probab=28.59 E-value=10 Score=17.32 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=10.6 Q ss_pred CCEEEECCCCCCCC Q ss_conf 99898330427876 Q T0613 188 GRCINIHHSFLPGF 201 (287) Q Consensus 188 ~riiNiHpSlLP~f 201 (287) |=+=||||+|||+= T Consensus 109 GVlP~i~~~ll~kk 122 (128) T 1f66_C 109 GVIPHIHKSLIGKK 122 (128) T ss_dssp CCCCCCCGGGC--- T ss_pred CCCCCCCHHHCCCC T ss_conf 45674058776876 No 111 >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Probab=28.30 E-value=26 Score=14.59 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=97.7 Q ss_pred HHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCHHHCCCCCCCCEEEEEECC Q ss_conf 99999999759848771110245657689999996287778989999999-99998725201000135634279998067 Q T0613 20 SAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGF-GVIAAKFTMGWHMRDRETRRKVMLLVSQS 98 (287) Q Consensus 20 A~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al-~~la~~~~~~i~i~~~~~~~riavlvSg~ 98 (287) ..|...|-+..+|..-+.+|.+.....-. .-+......+...+.+.+ +++.+-++-+-.......++.+..||-=. T Consensus 33 ~eI~~aLLeADV~~~vv~~~i~~ik~~~~---~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~~~~~~~p~vi~~vG~~ 109 (443) T 3dm5_A 33 RDIQRALIQADVNVRLVLQLTREIQRRAL---EEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQ 109 (443) T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH---HCCCCTTCCHHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCT T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCC T ss_conf 99999999716888999999999999970---776666689699999999999998736443310013565146522466 Q ss_pred C----CCHHHHHHHHHCCCCCCEEEEEEECC--HHHH--HH-HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 8----77799999996689994389997288--6789--99-99956995998288888878999999999984489999 Q T0613 99 D----HCLADILYRWRVGDLHMIPTAIVSNH--PRET--FS-GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLV 169 (287) Q Consensus 99 g----~~l~all~~~~~g~L~~ei~~Visn~--~~~~--~~-~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dli 169 (287) | +...-| .++...+ +-.+.+|-++. +.|. +. .|++.++|++-.+... +...--.+.++..+..+.|+| T Consensus 110 G~GKTTT~aKL-A~~~~~~-g~kv~lva~Dt~R~aA~eQL~~~a~~~~v~v~~~~~~~-dp~~i~~~~~~~~~~~~~Dvv 186 (443) T 3dm5_A 110 GSGKTTTVAKL-ARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEK-DAIKLAKEGVDYFKSKGVDII 186 (443) T ss_dssp TSSHHHHHHHH-HHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCC-CHHHHHHHHHHHHHHTTCSEE T ss_pred CCCCHHHHHHH-HHHHHHC-CCEEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCCCH-HHHHHHHHHHHHHHHCCCCEE T ss_conf 66640688999-9999963-98268997300000166788988503677510466202-578899998999875799989 Q ss_pred E--EECCCCCCCHHHHHHCCC--CEEEECCCC--CCCCCCCCHHHHHHH--CCCEEEEEEEEEEECC Q ss_conf 9--812210179789984179--989833042--787666316999998--1790855689987078 Q T0613 170 V--LARYMQILSDEMSARLAG--RCINIHHSF--LPGFKGAKPYHQAFD--RGVKLIGATAHYVTSA 228 (287) Q Consensus 170 v--LAgym~iL~~~~~~~~~~--riiNiHpSl--LP~f~G~~~~~~a~~--~Gvk~~G~TvH~V~~~ 228 (287) . .||-++. ..+..+.... +++|=|-.| +++--|.+.+.+|.. ..+.++|+-.--.|+. T Consensus 187 iIDTAGR~~~-d~~lm~El~~i~~~~~p~e~llV~da~~gq~a~~~a~~f~~~~~i~g~IlTKlD~~ 252 (443) T 3dm5_A 187 IVDTAGRHKE-DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGS 252 (443) T ss_dssp EEECCCCSSC-CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSC T ss_pred EEECCCCCHH-HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCC T ss_conf 9878875465-78889999876203587400352032122767766665520256340244125688 No 112 >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Probab=28.25 E-value=26 Score=14.58 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=35.3 Q ss_pred CCCCCCEEEEEECCC-CCHHHHHHHHHCCCCCCEEEEEEECCH---H--HHHHHHHHCCCCEEECCCCC Q ss_conf 356342799980678-777999999966899943899972886---7--89999995699599828888 Q T0613 85 RETRRKVMLLVSQSD-HCLADILYRWRVGDLHMIPTAIVSNHP---R--ETFSGFDFGDIPFYHFPVNK 147 (287) Q Consensus 85 ~~~~~riavlvSg~g-~~l~all~~~~~g~L~~ei~~Visn~~---~--~~~~~a~~~~Ip~~~~~~~~ 147 (287) ..+.+|++|+.||.- |.+-+.+- .+. ..++.++--|+. + .....|+..|+|++.++.+. T Consensus 3 ~~k~~kv~V~~SGG~DS~~la~ll-~~~---g~~v~~~~~~~~~~~~~~~~~~~a~~lgi~~~~~~~~~ 67 (203) T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVIL-KKL---GYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDR 67 (203) T ss_dssp ---CEEEEEECCCSHHHHHHHHHH-HHT---TEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCT T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHC---CCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCH T ss_conf 553461899953768999999999-972---99769999679986379999999998469629997889 No 113 >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Probab=28.02 E-value=27 Score=14.56 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=9.8 Q ss_pred HHHHHHHHHCCCHHHCCCC Q ss_conf 9999998725201000135 Q T0613 68 GFGVIAAKFTMGWHMRDRE 86 (287) Q Consensus 68 al~~la~~~~~~i~i~~~~ 86 (287) +...+|+++|....+.+.. T Consensus 69 da~~va~~LgIp~~v~d~~ 87 (380) T 2der_A 69 DAQAVCDKLGIELHTVNFA 87 (380) T ss_dssp HHHHHHHHHTCCEEEEECH T ss_pred HHHHHHHHCCCCEEEECHH T ss_conf 9999999849977997879 No 114 >1m94_A HUB1, protein YNR032C-A; ubiquitin-like fold or beta-grAsp fold, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 1p0r_A Probab=27.63 E-value=27 Score=14.51 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=24.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 0157538898989999999998899999999988598389 Q T0613 237 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 237 Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) .-.++|.++||+.+|++++.+.+..- +.-.+|+..||.. T Consensus 33 ~~~i~v~~~dTV~~lK~~I~~~~gip-~~~qrLi~~Gk~L 71 (93) T 1m94_A 33 KVRVKCLAEDSVGDFKKVLSLQIGTQ-PNKIVLQKGGSVL 71 (93) T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCCT-TTSEEEESSSCEE T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC-CCCEEEEEEEEEC T ss_conf 99999889690999999751776998-5218999836891 No 115 >2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative, eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Probab=27.61 E-value=27 Score=14.51 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=41.6 Q ss_pred ECCCCCHHHHHHHHHCCCCCCEEEEEEE-CCHHHHHH-----HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 0678777999999966899943899972-88678999-----99956995998288888878999999999984489999 Q T0613 96 SQSDHCLADILYRWRVGDLHMIPTAIVS-NHPRETFS-----GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLV 169 (287) Q Consensus 96 Sg~g~~l~all~~~~~g~L~~ei~~Vis-n~~~~~~~-----~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dli 169 (287) +|.|+-+..+..+++.|. .+.++++ .+|...+. ...+.|||+.+++ |..+.-.+..-++|.| T Consensus 193 ~~~gtal~vi~~a~~~gk---~~~V~v~EtRP~~qG~rlta~eL~~~gi~~t~i~---------Dsa~~~~m~~~~vd~V 260 (383) T 2a0u_A 193 SRYGTALGVVRQLFYDGK---LERVYACETRPWNQGARLTVYECVQEDIPCTLIC---------DGAASSLMLNRKIDAV 260 (383) T ss_dssp SSSCSHHHHHHHHHHTTC---EEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEEC---------GGGHHHHHHHSCCCEE T ss_pred ECCCHHHHHHHHHHHCCC---CCEEEECCCCHHCCCHHHHHHHHHHCCCCCEEEE---------CCHHHHHHHCCCCCEE T ss_conf 122055788899998798---6379971470101425899999986268708986---------1327777522653189 Q ss_pred EEE Q ss_conf 981 Q T0613 170 VLA 172 (287) Q Consensus 170 vLA 172 (287) ++. T Consensus 261 ivG 263 (383) T 2a0u_A 261 VVG 263 (383) T ss_dssp EEC T ss_pred EEE T ss_conf 870 No 116 >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Probab=27.49 E-value=27 Score=14.49 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=24.6 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHC-------CCCEEEEC Q ss_conf 99999998448999998122101797899841-------79989833 Q T0613 155 AAITALIAQTHTDLVVLARYMQILSDEMSARL-------AGRCINIH 194 (287) Q Consensus 155 ~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~-------~~riiNiH 194 (287) .++.++.++.+ ..+..||++...|.+...- -|++..++ T Consensus 191 ~~l~~~a~~~~--~~~~v~~~~r~~p~~~~~k~li~~g~iG~i~~i~ 235 (433) T 1h6d_A 191 QRMIDAAKAAN--KKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVT 235 (433) T ss_dssp HHHHHHHHHHT--CCEEECCGGGGCHHHHHHHHHHHTTSSCSEEEEE T ss_pred HHHHHHHHHCC--CCEEEEECCCCCCHHEEECCCCCCCCCCCEEEEE T ss_conf 88889997505--5147863035674001200222223457325543 No 117 >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} Probab=27.12 E-value=28 Score=14.45 Aligned_cols=208 Identities=11% Similarity=0.089 Sum_probs=96.0 Q ss_pred HHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCC-HHHHHHHH-HHHHHHHCC-CHHHCCCCCCCCEEEE Q ss_conf 69999999997598487711102456576899999962877789-89999999-999987252-0100013563427999 Q T0613 18 IVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIP-LASLRTGF-GVIAAKFTM-GWHMRDRETRRKVMLL 94 (287) Q Consensus 18 IVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~-~~~L~~al-~~la~~~~~-~i~i~~~~~~~riavl 94 (287) ..-.+...|-+..+|..-+.++.+....... .-.... ..+ .+.+.+.+ +++.+-++- ...+.....++++..| T Consensus 29 ~l~ei~~aLLeADV~~~vv~~~i~~ik~~~~---~~~~~~-~~~~~~~i~kiv~~eL~~lL~~~~~~~~~~~~~p~VIll 104 (432) T 2v3c_C 29 VIKDIQRALIQADVNVKLVLKMSKEIERRAL---EEKTPK-GLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILL 104 (432) T ss_dssp HHHHHHHHHHHTCCCHHHHHHHTHHHHHHHS---SSCSSC-SSCHHHHHHHHHHHHHHHHHCCSCCCCCCCSSSCCCEEE T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---CCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE T ss_conf 9999999998778988999999999999983---374666-688599999999999998747554543337899869998 Q ss_pred EE--CCC--CCHHHHHHHHHCCCCCCEEEEEEEC--CHHHH--H-HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 80--678--7779999999668999438999728--86789--9-99995699599828888887899999999998448 Q T0613 95 VS--QSD--HCLADILYRWRVGDLHMIPTAIVSN--HPRET--F-SGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTH 165 (287) Q Consensus 95 vS--g~g--~~l~all~~~~~g~L~~ei~~Visn--~~~~~--~-~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~ 165 (287) |- |.| ++..=|...++.. +-.+.+|-++ |+.|. + ..|++.++|++..........+.....++..+.++ T Consensus 105 vG~~GsGKTTTiaKLA~~l~~~--g~kv~LvaaDtfR~aAieQL~~~a~~~~vp~~~~~~~~~~~~~i~~~a~~~~~~~D 182 (432) T 2v3c_C 105 VGIQGSGKTTTAAKLARYIQKR--GLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKAD 182 (432) T ss_dssp ECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTSSCS T ss_pred ECCCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 5787764245999999999976--99863775124758799999998863388743674456675899999999965999 Q ss_pred CCEEEEECCCCCCCHHHHHHCC--CCEEEECCCCC--CCCCCCCHHHHH--HHCCC-EEEEEEEEEEECCCCCC Q ss_conf 9999981221017978998417--99898330427--876663169999--98179-08556899870788879 Q T0613 166 TDLVVLARYMQILSDEMSARLA--GRCINIHHSFL--PGFKGAKPYHQA--FDRGV-KLIGATAHYVTSALDEG 232 (287) Q Consensus 166 ~DlivLAgym~iL~~~~~~~~~--~riiNiHpSlL--P~f~G~~~~~~a--~~~Gv-k~~G~TvH~V~~~lD~G 232 (287) +=+|=.||-++. ..++.+... .+++|-|..+| .+--|.+...+| +...+ .++|+-+--+|+.--.| T Consensus 183 vviIDTAGR~~~-d~~lm~EL~~i~~~~~P~e~lLVlda~~Gq~a~~~a~~f~~~v~~i~giIlTKlDg~akgG 255 (432) T 2v3c_C 183 VLIIDTAGRHKE-EKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGG 255 (432) T ss_dssp EEEEECCCSCSS-HHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCSTTH T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH T ss_conf 899878876611-1679999999997619873665301430157899899999886135645775024677634 No 118 >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=26.63 E-value=28 Score=14.39 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=27.3 Q ss_pred CCCCEE---EEEEECCCCCCHHHHHHHHHHHCCCCEEEC Q ss_conf 999708---999984999746999999999759848771 Q T0613 1 MPHHQY---VLTLSCPDRAGIVSAVSTFLFENGQNILDA 36 (287) Q Consensus 1 M~~~~~---VLTv~gpDr~GIVA~Vt~~Lae~g~NI~di 36 (287) |+|+++ +..|+|..+ ||=.+++..|++.|+++.=. T Consensus 1 M~M~rl~gK~alVTGas~-GIG~aia~~la~~Ga~Vvi~ 38 (259) T 3edm_A 1 MSLQRFTNRTIVVAGAGR-DIGRACAIRFAQEGANVVLT 38 (259) T ss_dssp ---CTTTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEE T ss_pred CCCCCCCCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEE T ss_conf 998784989899938986-89999999999879989998 No 119 >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold domains, structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus HB8} Probab=26.48 E-value=28 Score=14.38 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=36.0 Q ss_pred HHCCCCEEEEC--CCCCCCCCCCCHHH---HH-------HHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHH Q ss_conf 84179989833--04278766631699---99-------98179085568998707888797640015753889898999 Q T0613 184 ARLAGRCINIH--HSFLPGFKGAKPYH---QA-------FDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADL 251 (287) Q Consensus 184 ~~~~~riiNiH--pSlLP~f~G~~~~~---~a-------~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L 251 (287) .+-.++|+|+- -++.| ++|..+|. .| +..-.+-.|.+|.-|.++.=.-|...+...+-...-+||+. T Consensus 110 ~~~~g~iv~isS~~~~~~-~~~~~~Y~asKaal~~~~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~pe~v 188 (207) T 2yut_A 110 FQKGARAVFFGAYPRYVQ-VPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPLGGPPKGALSPEEA 188 (207) T ss_dssp EEEEEEEEEECCCHHHHS-STTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGGGTSCCTTCBCHHHH T ss_pred HCCCCCEEEECCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEEECCCCCHHHHHCCCCCCCCCCHHHH T ss_conf 668987698315765258-9997789999999999999999985411879999973989775443226886557999999 Q ss_pred HHHHH Q ss_conf 99999 Q T0613 252 VRKGR 256 (287) Q Consensus 252 ~~r~~ 256 (287) ++.+. T Consensus 189 A~~i~ 193 (207) T 2yut_A 189 ARKVL 193 (207) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 120 >2kg4_A Growth arrest and DNA-damage-inducible protein GADD45 alpha; flexible regions, monomer, cell cycle; NMR {Homo sapiens} Probab=25.80 E-value=29 Score=14.29 Aligned_cols=12 Identities=0% Similarity=0.152 Sum_probs=5.4 Q ss_pred CHHHHHHHHHHH Q ss_conf 989999999999 Q T0613 61 PLASLRTGFGVI 72 (287) Q Consensus 61 ~~~~L~~al~~l 72 (287) ..+.+.++++++ T Consensus 15 ~~~~v~~AL~ev 26 (165) T 2kg4_A 15 RMDKVGDALEEV 26 (165) T ss_dssp CHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 088999999999 No 121 >3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* Probab=24.99 E-value=30 Score=14.20 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=73.4 Q ss_pred CCEEEEEECCCCCHHHHHH-----HH---HCC--CCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHH------- Q ss_conf 4279998067877799999-----99---668--999438999728867899999956995998288888878------- Q T0613 89 RKVMLLVSQSDHCLADILY-----RW---RVG--DLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRR------- 151 (287) Q Consensus 89 ~riavlvSg~g~~l~all~-----~~---~~g--~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~------- 151 (287) .-..+.+|++|+++.-+.. .| +.| .....+.++.+++..+....|+..+++++.+|-.-..|- T Consensus 134 ~t~~iviSKSG~T~ET~~~~~~~~~~l~~~~~~~~~~~~~~~iT~~~~~~l~~~a~~~~~~~f~~p~~VGGRfSv~S~vG 213 (446) T 3ff1_A 134 DFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVG 213 (446) T ss_dssp CEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHHHHHHHHHTCEEEECCTTCCGGGCTTSHHH T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHHHHHHHHCCCCEECCCCCCCCCEECCCCCH T ss_conf 75599998998877699999999999997047355544789973675567898744013115516888888631324330 Q ss_pred ----------------------------------HH-HHHHHHHHHHCCCCEEEEECC---CCCCCHHHHHHC---CCC- Q ss_conf ----------------------------------99-999999998448999998122---101797899841---799- Q T0613 152 ----------------------------------QQ-EAAITALIAQTHTDLVVLARY---MQILSDEMSARL---AGR- 189 (287) Q Consensus 152 ----------------------------------~~-e~~l~~~l~~~~~DlivLAgy---m~iL~~~~~~~~---~~r- 189 (287) +. -+.+...+...+....|+.-| ++-|+..+-+-| .|| T Consensus 214 Llp~a~~G~d~~~ll~GA~~~~~~~~~~~~~~N~a~~~a~~~~~~~~~g~~~~v~~~Y~~~L~~~~~w~qQL~mESlGK~ 293 (446) T 3ff1_A 214 LLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKD 293 (446) T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTCCCCGGGCHHHHHHHHHHHHHHTTCCEEEEEESSGGGHHHHHHHHHHHHHHHCCT T ss_pred HHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC T ss_conf 57775244057665146899986665414665189999999840301445507998456767789999999700025778 Q ss_pred --EEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCC Q ss_conf --89833042787666316999998179085568998707888797 Q T0613 190 --CINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGP 233 (287) Q Consensus 190 --iiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~Gp 233 (287) -+..-.+ ..=.+.|.+.|-+..|-+..-+|.+.+.+.-...+ T Consensus 294 ~~g~~p~~~--~gt~dqHS~~Ql~~qG~~~~~~~fi~~~~~~~~~~ 337 (446) T 3ff1_A 294 FKGIYPSSA--NYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDIT 337 (446) T ss_dssp TCCCEEEEE--ETTGGGGTTHHHHHHSCSCEEEEEEEESSCSSCCB T ss_pred CCCCCCCCC--CCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCC T ss_conf 889861106--99987101234443188433578885167643334 No 122 >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Probab=24.91 E-value=30 Score=14.19 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=20.7 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 0157538898989999999998899999999988598389 Q T0613 237 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 237 Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) +..+.|.+++|+.+|++++.+.+.. -+.-.+|+..|++. T Consensus 33 ~~~i~V~~~~TV~~LK~~I~~~~gi-p~~~qrLi~~Gk~L 71 (100) T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKA-HPDQLVLIFAGKIL 71 (100) T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTC-CGGGEEEEETTEEC T ss_pred CEEEEECCCCHHHHHHHHHHHHHCC-CCHHEEEEEEEEEC T ss_conf 7999989979699999998898784-90477999864321 No 123 >3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1 Probab=24.83 E-value=30 Score=14.18 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=44.1 Q ss_pred CCC---CEEEEEEECCCCCCHHHHHHHHHHHCC----CCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 999---708999984999746999999999759----8487711102456576899999962877789899999999999 Q T0613 1 MPH---HQYVLTLSCPDRAGIVSAVSTFLFENG----QNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIA 73 (287) Q Consensus 1 M~~---~~~VLTv~gpDr~GIVA~Vt~~Lae~g----~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la 73 (287) |+| +|.||-+.-|-+|-|+. ++..|++.. .||.=.. .+.+.-.+.+.+ ++.++++++++++++.+| T Consensus 1 ~~m~~iRRlVLDVlKPh~P~i~e-~A~~l~~~~gV~gVnItV~E----vD~eTe~lkItI--EG~nidyd~I~~~IE~~G 73 (100) T 3bpd_A 1 MSLKGLRRLVLDVLKPHEPKTIV-FALKLSELENVDGVNIHLSE----IDQATENIKITI--LGNNLDYEQIKGVIEDMG 73 (100) T ss_dssp --CCSEEEEEEEEEEESCSCHHH-HHHHHHTSTTEEEEEEEEEE----ECSSEEEEEEEE--EEEEECHHHHHHHHHTTT T ss_pred CCCCCCEEEEEEEECCCCCCHHH-HHHHHHHCCCCCEEEEEEEE----ECCCCEEEEEEE--EECCCCHHHHHHHHHHCC T ss_conf 96433158999840588987999-99999727896559999999----604751689999--947879799999999759 Q ss_pred H Q ss_conf 8 Q T0613 74 A 74 (287) Q Consensus 74 ~ 74 (287) . T Consensus 74 g 74 (100) T 3bpd_A 74 G 74 (100) T ss_dssp C T ss_pred C T ss_conf 8 No 124 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Probab=24.61 E-value=31 Score=14.15 Aligned_cols=141 Identities=7% Similarity=-0.019 Sum_probs=77.7 Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHC-CCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 99970899998499974699999999975-98487711102456576899999962877789899999999999872520 Q T0613 1 MPHHQYVLTLSCPDRAGIVSAVSTFLFEN-GQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG 79 (287) Q Consensus 1 M~~~~~VLTv~gpDr~GIVA~Vt~~Lae~-g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~ 79 (287) |+|++..+-++|--..|-. -...|.+. +++++- . .+. + .+..++.+++++.. T Consensus 1 m~m~kir~giIG~G~i~~~--h~~~l~~~~~~~lva----------------v--~d~---~----~~~a~~~a~~~~~~ 53 (330) T 3e9m_A 1 MSLDKIRYGIMSTAQIVPR--FVAGLRESAQAEVRG----------------I--ASR---R----LENAQKMAKELAIP 53 (330) T ss_dssp --CCCEEEEECSCCTTHHH--HHHHHHHSSSEEEEE----------------E--BCS---S----SHHHHHHHHHTTCC T ss_pred CCCCCCEEEEECCHHHHHH--HHHHHHHCCCCEEEE----------------E--ECC---C----HHHHHHHHHHCCCC T ss_conf 9977848999988299999--999997389918999----------------9--889---9----99999999984998 Q ss_pred HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHH Q ss_conf 100013563427999806787779999999668999438999728867-89-99999569959982-8888887899999 Q T0613 80 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAA 156 (287) Q Consensus 80 i~i~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~ 156 (287) ..-+++.+++.. . ..+++.|.+.+.. +. ...|-.+|+|..+- |.. .+..++ .+ T Consensus 54 -----------------~~~~~~~~ll~~---~--~~D~V~I~tp~~~h~~~a~~al~~gk~vl~EKPla-~~~~ea-~~ 109 (330) T 3e9m_A 54 -----------------VAYGSYEELCKD---E--TIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFT-LNAAEA-EE 109 (330) T ss_dssp -----------------CCBSSHHHHHHC---T--TCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCC-SSHHHH-HH T ss_pred -----------------EEECCHHHHHHC---C--CCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCC-CCCCCC-CC T ss_conf -----------------254989999717---7--75511133210111021133224331222034543-221101-22 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHC-------CCCEEEEC Q ss_conf 999998448999998122101797899841-------79989833 Q T0613 157 ITALIAQTHTDLVVLARYMQILSDEMSARL-------AGRCINIH 194 (287) Q Consensus 157 l~~~l~~~~~DlivLAgym~iL~~~~~~~~-------~~riiNiH 194 (287) +.++.++.+. .+..||++...|.+...- -|++..+. T Consensus 110 l~~~~~~~~~--~~~v~~~~r~~p~~~~~k~li~~g~iG~i~~~~ 152 (330) T 3e9m_A 110 LFAIAQEQGV--FLMEAQKSVFLPITQKVKATIQEGGLGEILWVQ 152 (330) T ss_dssp HHHHHHHTTC--CEEECCSGGGCHHHHHHHHHHHTTTTCSEEEEE T ss_pred CCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEE T ss_conf 2112222343--332222234576300110000257766314444 No 125 >2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, PSI-2, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Probab=24.58 E-value=31 Score=14.15 Aligned_cols=85 Identities=13% Similarity=0.262 Sum_probs=53.9 Q ss_pred EEEEEEECCHHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHCCCCEEEEC Q ss_conf 38999728867899999956995-9982888888789999999999844899999812-210179789984179989833 Q T0613 117 IPTAIVSNHPRETFSGFDFGDIP-FYHFPVNKDTRRQQEAAITALIAQTHTDLVVLAR-YMQILSDEMSARLAGRCINIH 194 (287) Q Consensus 117 ei~~Visn~~~~~~~~a~~~~Ip-~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAg-ym~iL~~~~~~~~~~riiNiH 194 (287) --.+||+|++..-+- +-.||. ++.. .+.++.++.+.++++.-++-+|++.- ++.-+++.+.+.+.+++ . T Consensus 10 ~~IaVIGd~dtv~GF--~LaGI~~v~~v----~~~ee~~~~~~~ll~~~~~gII~ite~~~~~i~~~l~~~~~~~~---~ 80 (102) T 2i4r_A 10 HMLAVVGDPDFTIGF--MLAGISDIYEV----TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKV---E 80 (102) T ss_dssp CEEEEEECHHHHHHH--HHTTCCCEEEC----CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCC---S T ss_pred EEEEEEECHHHHHHH--HHHCCCCEECC----CCHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCC---C T ss_conf 699999788988889--98188840678----99899999999986289848999738999875799999986588---4 Q ss_pred CCC--CCCCCCCCHHHHH Q ss_conf 042--7876663169999 Q T0613 195 HSF--LPGFKGAKPYHQA 210 (287) Q Consensus 195 pSl--LP~f~G~~~~~~a 210 (287) |.. +|+-.|-.+.++. T Consensus 81 P~Vi~IP~~~g~~~~~~~ 98 (102) T 2i4r_A 81 PTFVSVGGTGGVEEIREK 98 (102) T ss_dssp SEEEEEC----------- T ss_pred EEEEECCCCCCCCHHHHH T ss_conf 045854897887208889 No 126 >1vr9_A CBS domain protein/ACT domain protein; TM0892, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Probab=24.45 E-value=12 Score=16.84 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=9.3 Q ss_pred HHHHHHHHHHCCCCEEEC Q ss_conf 999999999759848771 Q T0613 19 VSAVSTFLFENGQNILDA 36 (287) Q Consensus 19 VA~Vt~~Lae~g~NI~di 36 (287) +..+-+.+.+++.+-+-+ T Consensus 32 v~ea~~~m~~~~~~~lpV 49 (213) T 1vr9_A 32 VRECLHRMRQYQTNECIV 49 (213) T ss_dssp HHHHHHHHHHTTSSEEEE T ss_pred HHHHHHHHHHCCCCEEEE T ss_conf 999999999829818999 No 127 >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein structure initiative; 2.66A {Mycobacterium tuberculosis CDC1551} SCOP: c.2.1.1 Probab=24.33 E-value=31 Score=14.11 Aligned_cols=80 Identities=6% Similarity=-0.059 Sum_probs=45.2 Q ss_pred CCEEEEEECC-CCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 4279998067-877799999996689994389997288678999999569959982888888789999999999844899 Q T0613 89 RKVMLLVSQS-DHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTD 167 (287) Q Consensus 89 ~riavlvSg~-g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~D 167 (287) +.=.||+.|- |..-+..+...+ .+.+.+..+.++.++. ..++..|..... +.+.+ .+.+++.+.....++| T Consensus 38 ~g~~vlV~ga~g~vG~~~iq~a~--~~~~~vi~~~~~~~~~--~~~~~~Ga~~vi-~~~~~---~~~~~v~~~t~g~gvd 109 (198) T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAK--MIGARIYTTAGSDAKR--EMLSRLGVEYVG-DSRSV---DFADEILELTDGYGVD 109 (198) T ss_dssp TTCEEEETTTTSHHHHHHHHHHH--HHTCEEEEEESSHHHH--HHHHTTCCSEEE-ETTCS---THHHHHHHHTTTCCEE T ss_pred CCCEEEEECCCCHHHHHHHHHHH--HCCCEEEEEECCHHHH--HHHHCCCCEEEE-ECCCC---CHHHHHHHHHCCCCEE T ss_conf 99989999384558789999887--5386389861436776--664046870899-89998---8999999983898769 Q ss_pred EEEEECCCC Q ss_conf 999812210 Q T0613 168 LVVLARYMQ 176 (287) Q Consensus 168 livLAgym~ 176 (287) +++-.---. T Consensus 110 vv~d~vg~~ 118 (198) T 1pqw_A 110 VVLNSLAGE 118 (198) T ss_dssp EEEECCCTH T ss_pred EEEECCCHH T ss_conf 999357689 No 128 >1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1 Probab=23.92 E-value=32 Score=14.06 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=46.0 Q ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999999987252010001356342799980678777999999966899943899972 Q T0613 64 SLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 123 (287) Q Consensus 64 ~L~~al~~la~~~~~~i~i~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Vis 123 (287) -+|.-....|.++++.=-+..... -++-+++.|....+++++..++.|.-.+.|.-|-. T Consensus 16 GFR~~~~~~A~~l~l~G~V~N~~d-G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 74 (88) T 1ulr_A 16 GYRAFAQKKALELGLSGYAENLPD-GRVEVVAEGPKEALELFLHHLKQGPRLARVEAVEV 74 (88) T ss_dssp SHHHHHHHHHHHTTCEEEEEECTT-SCEEEEEESCHHHHHHHHHHHHHCSTTCEEEEEEE T ss_pred CCHHHHHHHHHHHCCEEEEEECCC-CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 788999999997399389999999-98999999499999999999972989739999999 No 129 >1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S, lyase; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Probab=23.59 E-value=32 Score=14.02 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=29.3 Q ss_pred CCCCCCCCEEEEEECCCCCH--HHHHHHHHCCCCCCEEEEEEECCH Q ss_conf 01356342799980678777--999999966899943899972886 Q T0613 83 RDRETRRKVMLLVSQSDHCL--ADILYRWRVGDLHMIPTAIVSNHP 126 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l--~all~~~~~g~L~~ei~~Visn~~ 126 (287) ..+-+++||.+-+||+-.+. -.|+...+. .+||.+|.|... T Consensus 14 ~~~p~~kkIllgvtGsIAayk~~~lvr~L~~---~~eV~vi~T~~A 56 (209) T 1mvl_A 14 NTTPRKPRVLLAASGSVAAIKFGNLCHCFTE---WAEVRAVVTKSS 56 (209) T ss_dssp -----CCEEEEEECSSGGGGGHHHHHHHHHT---TSEEEEEECTGG T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHHHC---CCEEEEEECHHH T ss_conf 5799998699998269999999999999862---787999985789 No 130 >2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative; 1.95A {Thermotoga maritima MSB8} SCOP: d.58.18.14 Probab=23.51 E-value=32 Score=14.01 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=45.4 Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCH Q ss_conf 99970899998499974699999999975984877111024565768999999628777898999999999998725201 Q T0613 1 MPHHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGW 80 (287) Q Consensus 1 M~~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i 80 (287) |..+=+|+-++=.||.--+.+|-+.|.++|++|.-===-=+...+.=..-+.++.+ .+++.+--.+|+.--++++ T Consensus 3 M~~ri~vigIiVe~r~~~a~kVneiL~~yg~~I~gRmGiP~~~~~v~iIsl~v~g~-----~d~I~aLtgKLg~i~gV~v 77 (86) T 2nzc_A 3 MEKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTD-----NDTIGALSGKLGQISGVRV 77 (86) T ss_dssp -CCEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEEC-----HHHHHHHHHHHHTSTTEEE T ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECC-----HHHHHHHHHHHCCCCCEEE T ss_conf 34349999999958288689999999875887898647880547913999999888-----8899998876369998899 No 131 >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Probab=23.47 E-value=32 Score=14.01 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=42.4 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCC-CC--EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 089999849997469999999997598487711102456-57--689999996287778989999999999987252 Q T0613 5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTE-SG--HFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTM 78 (287) Q Consensus 5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~-~g--~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~ 78 (287) +.-|.++-+|++|-.+++-+...++++|+..+..--... .+ -||+ +.+.. +...|...++.+-..... T Consensus 34 ktSiiFSLkd~vGsLaraLkvFe~~~INLtHIESRPSk~~~~~yeffV----d~E~~--~~~~l~~li~~Lk~~~~~ 104 (429) T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT----YLDKR--TKPVLGSIIKSLRNDIGA 104 (429) T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE----CBCGG--GHHHHHHHHHHHHHTTCC T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEE----EECCC--CCHHHHHHHHHHHHHHHH T ss_conf 089999968761589999999998693699963688878888626999----98267--847899999999987511 No 132 >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} Probab=23.43 E-value=32 Score=14.00 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=4.1 Q ss_pred HCCCCEEEEE Q ss_conf 4489999981 Q T0613 163 QTHTDLVVLA 172 (287) Q Consensus 163 ~~~~DlivLA 172 (287) +.++|-+||+ T Consensus 194 ~~~iD~lILG 203 (286) T 2jfq_A 194 NSESDTVILG 203 (286) T ss_dssp TCSCSEEEEE T ss_pred CCCCCEEEEC T ss_conf 4689889985 No 133 >2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Probab=23.36 E-value=32 Score=13.99 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=54.2 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHC-CCCEEECCCEECCCCCEEEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 0899998499974699999999975-9848771110245657689999996287-7789899999999999872520100 Q T0613 5 QYVLTLSCPDRAGIVSAVSTFLFEN-GQNILDAQQYNDTESGHFFMRVVFNAAA-KVIPLASLRTGFGVIAAKFTMGWHM 82 (287) Q Consensus 5 ~~VLTv~gpDr~GIVA~Vt~~Lae~-g~NI~disQf~d~~~g~FfMri~~~~~~-~~~~~~~L~~al~~la~~~~~~i~i 82 (287) +.++-++| |+=+.|+.+|... |.+++- +||+.--+.+. ..+...+=..+-..+++++|....+ T Consensus 11 rv~v~mSG----GVDSsvaa~lL~~~G~~V~g-----------v~m~~w~~~~~~~~c~~~~d~~da~~va~~LgIp~~~ 75 (376) T 2hma_A 11 RVVVGMSG----GVDSSVTALLLKEQGYDVIG-----------IFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYS 75 (376) T ss_dssp EEEEECCS----SHHHHHHHHHHHHTTCEEEE-----------EEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEE T ss_pred EEEEECCC----CHHHHHHHHHHHHCCCCEEE-----------EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 79999268----79999999999976995799-----------9997776777678777378899999999984997899 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCH-HH--HHHHHHHCCCCEE Q ss_conf 01356342799980678777999999966899943899972886-78--9999995699599 Q T0613 83 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHP-RE--TFSGFDFGDIPFY 141 (287) Q Consensus 83 ~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~-~~--~~~~a~~~~Ip~~ 141 (287) .+..... ..+.+.-.++.+..|.-|- ++|.+|+. +. -.+.|...|.++. T Consensus 76 ~d~~~~f--------~~~V~~~f~~~y~~G~TPN--Pcv~CN~~iKF~~l~~~a~~~g~d~i 127 (376) T 2hma_A 76 VNFEKEY--------WDRVFEYFLAEYRAGRTPN--PDVMCNKEIKFKAFLDYAITLGADYV 127 (376) T ss_dssp EECHHHH--------HHHTHHHHHHHHHTTCCCC--HHHHHHHHTTTTHHHHHHHTTTCSEE T ss_pred ECHHHHH--------HHHHHHHHHHHHHCCCCCC--CCEECCCCCCHHHHHHHHHHHCCCCC T ss_conf 6739999--------8888776799986247999--54014422035899999876132201 No 134 >2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} Probab=23.30 E-value=32 Score=13.99 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=109.4 Q ss_pred HHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHH-HHHHHHCCC-HHHCCCCCCCCEEEEE Q ss_conf 69999999997598487711102456576899999962877789899999999-999872520-1000135634279998 Q T0613 18 IVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG-VIAAKFTMG-WHMRDRETRRKVMLLV 95 (287) Q Consensus 18 IVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~-~la~~~~~~-i~i~~~~~~~riavlv 95 (287) ....|...|-+..+|..-+.++......... .-+......+...+.+.+. ++.+-++-. -.+.....++.+..|| T Consensus 29 ~l~ei~~aLL~ADV~~~~v~~li~~ik~~~~---~~~i~~~~~~~~~i~kiv~~eL~~~l~~~~~~l~~~~~~p~vIm~V 105 (430) T 2j28_9 29 TLREVRMALLEADVALPVVREFINRVKEKAV---GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMA 105 (430) T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT---TCCCCSSSCHHHHHHHHHHHHHHHHTTCSCCCCCSCSSSSCEEEEE T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE T ss_conf 9999999999758989999999999999983---0746766883999999999999987455654344367998599999 Q ss_pred E----CCCCCHHHHHHHHHC-CCCCCEEEEEEEC--CHHH--HHH-HHHHCCCCEEECCC-CCCCHHHHHHHHHHHHHHC Q ss_conf 0----678777999999966-8999438999728--8678--999-99956995998288-8888789999999999844 Q T0613 96 S----QSDHCLADILYRWRV-GDLHMIPTAIVSN--HPRE--TFS-GFDFGDIPFYHFPV-NKDTRRQQEAAITALIAQT 164 (287) Q Consensus 96 S----g~g~~l~all~~~~~-g~L~~ei~~Visn--~~~~--~~~-~a~~~~Ip~~~~~~-~~~~r~~~e~~l~~~l~~~ 164 (287) - |--+...=|...++. +... +.+|-++ |+.| ++. .|++.+||++.... +++....+++--....+.| T Consensus 106 GlnGsGKTTTiaKLA~~lk~k~gkk--VllvA~DTfRaAAieQLk~~a~~~~v~v~~~~~~~dp~~va~~ai~~ak~~~~ 183 (430) T 2j28_9 106 GLQGAGKTTSVGKLGKFLREKHKKK--VLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFY 183 (430) T ss_dssp CSSSSSSTTTHHHHHHHHHTSSSCC--CCBCCCCCSSSCSHHHHHHHHHHTTCCCCCCSSCCCTTHHHHHHHHHHHHTTC T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCE--EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 3248986150999999999847985--89996664546599999998761477732665445878999999999997699 Q ss_pred CCCEEEEECCCCCCCHHHHHHCCC--CEEEECCCCC--CCCCCCCHHHHH--HHCCCEEEEEEEEEEECCCCCCC Q ss_conf 899999812210179789984179--9898330427--876663169999--98179085568998707888797 Q T0613 165 HTDLVVLARYMQILSDEMSARLAG--RCINIHHSFL--PGFKGAKPYHQA--FDRGVKLIGATAHYVTSALDEGP 233 (287) Q Consensus 165 ~~DlivLAgym~iL~~~~~~~~~~--riiNiHpSlL--P~f~G~~~~~~a--~~~Gvk~~G~TvH~V~~~lD~Gp 233 (287) ++=+|=.||-++.= .++.+.... +.++=|-.|| .+--|.+.+.|| +..-+.++|+-+--.|+.--.|. T Consensus 184 DvViIDTAGRl~~d-~~Lm~EL~ki~~~~~P~e~lLV~DA~~Gq~~~~qa~~F~~~~~i~giIlTKlDg~akgG~ 257 (430) T 2j28_9 184 DVLLVDTAGRLHVD-EAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGA 257 (430) T ss_dssp SCEEEEECCCCSSH-HHHHHHHHHHHHHHCCSEEEEEEETTTGGGGHHHHHHHHTTCSSCEEEEECSSSCSCCTH T ss_pred CEEEEECCCHHHHH-HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH T ss_conf 98999566415547-999999999997569856999730445756899999998745886168850256777317 No 135 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=23.26 E-value=32 Score=13.98 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=27.3 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCH-HHHHHCCCCEEEECCC----CCCCCCCCCHHHHHHHCCCE Q ss_conf 999998448999998122101797-8998417998983304----27876663169999981790 Q T0613 157 ITALIAQTHTDLVVLARYMQILSD-EMSARLAGRCINIHHS----FLPGFKGAKPYHQAFDRGVK 216 (287) Q Consensus 157 l~~~l~~~~~DlivLAgym~iL~~-~~~~~~~~riiNiHpS----lLP~f~G~~~~~~a~~~Gvk 216 (287) .++.+++..+|+|++--.|.-.+. ++++..+. .+|. ++-++.......+|++.|+. T Consensus 39 al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~----~~~~~~ii~lt~~~~~~~~~~a~~~Ga~ 99 (120) T 1tmy_A 39 AVEKYKELKPDIVTMDITMPEMNGIDAIKEIMK----IDPNAKIIVCSAMGQQAMVIEAIKAGAK 99 (120) T ss_dssp HHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHH----HCTTCCEEEEECTTCHHHHHHHHHTTCC T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH----HCCCCCEEEEECCCCHHHHHHHHHCCCC T ss_conf 999998468988998456899978999999998----6889978999734899999999986998 No 136 >1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 Probab=22.99 E-value=33 Score=13.95 Aligned_cols=77 Identities=6% Similarity=-0.041 Sum_probs=45.8 Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCHH-H-HHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7779999999668999438999728867-8-999999569959982-888888789999999999844899999812210 Q T0613 100 HCLADILYRWRVGDLHMIPTAIVSNHPR-E-TFSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 176 (287) Q Consensus 100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~-~~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~ 176 (287) ++++++|.. . ..+.+.|.+.... + ....|-++|.+.++- |.. .+ .+.-.++.+..++.+. .+..||++ T Consensus 72 ~~~~~ll~~---~--~iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~a-~~-~~e~~~l~~~a~~~~~--~~~v~~~~ 142 (340) T 1zh8_A 72 DSYEELLES---G--LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPIS-TD-VETGKKVVELSEKSEK--TVYIAENF 142 (340) T ss_dssp SCHHHHHHS---S--CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSS-SS-HHHHHHHHHHHHHCSS--CEEEECGG T ss_pred CCHHHHHHC---C--CCCEEEECCCEECCCCCCCCCCCCCHHHHHCCCCC-CC-CCCCCCCCCCCCCCCC--CCCCCCEE T ss_conf 889999718---8--76546421210001221112233211222043432-12-1222222212222343--22234225 Q ss_pred CCCHHHHHH Q ss_conf 179789984 Q T0613 177 ILSDEMSAR 185 (287) Q Consensus 177 iL~~~~~~~ 185 (287) ...|.+... T Consensus 143 R~~p~~~~~ 151 (340) T 1zh8_A 143 RHVPAFWKA 151 (340) T ss_dssp GGCHHHHHH T ss_pred ECCCCHHHH T ss_conf 327511578 No 137 >2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Probab=22.53 E-value=33 Score=13.89 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=61.0 Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCH Q ss_conf 99970899998499974699999999975984877111024565768999999628777898999999999998725201 Q T0613 1 MPHHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGW 80 (287) Q Consensus 1 M~~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i 80 (287) |..++..|.+.|=+=.|=+++|.+.|.+..+ +.+++- +...+. ..+.+++...+.+++.+.++.++-+.... T Consensus 1 ~~~~~~~l~v~GM~C~~Ca~~Ie~~l~~~~G-V~~v~v--~l~~~~----~~v~~d~~~~~~~~i~~~i~~~g~~~~~~- 72 (149) T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAG-VLSVLV--ALMAGK----AEIKYDPEVIQPLEIAQFIQDLGFEAAVM- 72 (149) T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSS-CCCEEE--ETTTTE----EEEEECTTTCCHHHHHHHHHHHTCEEEEC- T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-EEEEEE--EECCCE----EEEEEECCCCCHHHHHHHHHHCCCCCEEE- T ss_conf 9975999997997488999999999854999-169986--603898----99998157589889988774036432022- Q ss_pred HHCCCCCCCCEEEEEECCC--CCHHHHHHH Q ss_conf 0001356342799980678--777999999 Q T0613 81 HMRDRETRRKVMLLVSQSD--HCLADILYR 108 (287) Q Consensus 81 ~i~~~~~~~riavlvSg~g--~~l~all~~ 108 (287) -.......++-+.++|-. +|-+.+-.+ T Consensus 73 -~~~~~~~~~~~l~v~gm~C~~c~~~Ie~~ 101 (149) T 2ew9_A 73 -EDYAGSDGNIELTITGMTCASCVHNIESK 101 (149) T ss_dssp -SCSCCSSSEEEEEEESCCSHHHHHHHHHH T ss_pred -EECCCCCCEEEEEECCCCCHHHHHHHHHH T ss_conf -10246762687740787603757889999 No 138 >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Probab=22.15 E-value=34 Score=13.84 Aligned_cols=37 Identities=3% Similarity=-0.033 Sum_probs=23.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE Q ss_conf 57538898989999999998899999999988598389 Q T0613 239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI 276 (287) Q Consensus 239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~ 276 (287) .+.|.++||+.+|.+++.+.+.. -+...+|+..||+. T Consensus 41 ~l~V~~~~TV~~lK~~I~~~~gi-p~~~qrLi~~Gk~L 77 (101) T 3m63_B 41 EVNVAPESTVLQFKEAINKANGI-PVANQRLIYSGKIL 77 (101) T ss_dssp CBCCCTTSBHHHHHHHHHHHHSC-CSTTCCEEETTEEC T ss_pred EEEECCCCCHHHHHHHHHHHHCC-CHHHEEEEECCEEC T ss_conf 99989989199999999888796-93248999999798 No 139 >1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Probab=22.10 E-value=34 Score=13.83 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=39.1 Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCE Q ss_conf 085568998707888797640015753889898999999999889999999998859838982674 Q T0613 216 KLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRK 281 (287) Q Consensus 216 k~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~k 281 (287) +..-+||+|..-+ .-||+-|..+.|..+++.+.+.+-.+.. ++ .+.|++|=|- T Consensus 10 ~~~KV~v~fk~iG--~aPilk~~k~~is~~~~f~~vi~FLrk~--------Lk---~~slflYiN~ 62 (96) T 1wz3_A 10 SVQKIVVHLRATG--GAPILKQSKFKVSGSDKFANVIDFLRRQ--------LH---SDSLFVYVNS 62 (96) T ss_dssp --CEEEEEEEECT--TCCCCSCCEEEEETTSBTHHHHHHHHHH--------HT---CSSCEEEEEE T ss_pred CCCEEEEEEEECC--CCCCCCCCEEEECCCCCHHHHHHHHHHH--------HC---CCEEEEEECC T ss_conf 9766999998668--9863435458978887779999999998--------57---8809999888 No 140 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=22.06 E-value=34 Score=13.82 Aligned_cols=30 Identities=7% Similarity=0.172 Sum_probs=21.2 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHC Q ss_conf 999998448999998122101797899841 Q T0613 157 ITALIAQTHTDLVVLARYMQILSDEMSARL 186 (287) Q Consensus 157 l~~~l~~~~~DlivLAgym~iL~~~~~~~~ 186 (287) +..++.-++||.||+.|.+--..+.|++.. T Consensus 349 i~~li~~ldP~~IVlgG~v~~~~~~l~~~i 378 (429) T 1z05_A 349 IAIVINLFNPEKILIGGVINQAKSILYPSI 378 (429) T ss_dssp HHHHHHHHCCSEEEEESGGGGGHHHHHHHH T ss_pred HHHHHHHHCCCEEEEECHHHHCHHHHHHHH T ss_conf 999999979798999792573868899999 No 141 >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Probab=21.79 E-value=35 Score=13.79 Aligned_cols=14 Identities=7% Similarity=-0.000 Sum_probs=8.8 Q ss_pred HHHHHCCCCEEECC Q ss_conf 99995699599828 Q T0613 131 SGFDFGDIPFYHFP 144 (287) Q Consensus 131 ~~a~~~~Ip~~~~~ 144 (287) ..++..++|...-+ T Consensus 226 ~lae~~~~pv~~t~ 239 (563) T 2uz1_A 226 AFVAATGVPVFADY 239 (563) T ss_dssp HHHHHHCCCEEECG T ss_pred HHHHHCCCCEEEEC T ss_conf 99987499789641 No 142 >1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A Probab=21.75 E-value=35 Score=13.78 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=44.5 Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHH-HHHHH-----CCCCEEECCCCCCCHHHHHHHHH Q ss_conf 3563427999806787779999999668999438999728867899-99995-----69959982888888789999999 Q T0613 85 RETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETF-SGFDF-----GDIPFYHFPVNKDTRRQQEAAIT 158 (287) Q Consensus 85 ~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~-~~a~~-----~~Ip~~~~~~~~~~r~~~e~~l~ 158 (287) +.++.|+||++.|. ...+|+.. |...... ..... .|........-.++.++...++. T Consensus 2 p~~~~rvaIlt~gD---------ei~~G~~~--------D~ng~~l~~~l~~~~~~~~G~~v~~~~ivpDd~~~i~~~~~ 64 (167) T 1uuy_A 2 PGPEYKVAILTVSD---------TVSAGAGP--------DRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQ 64 (167) T ss_dssp -CCSEEEEEEEECH---------HHHTTSSC--------CSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHH T ss_pred CCCCCEEEEEEECC---------CCCCCCCC--------CCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHH T ss_conf 89998999999697---------67879845--------87589999999971310379779887776786999999999 Q ss_pred HHHHHCCCCEEEEECCCCC Q ss_conf 9998448999998122101 Q T0613 159 ALIAQTHTDLVVLARYMQI 177 (287) Q Consensus 159 ~~l~~~~~DlivLAgym~i 177 (287) +..++.+.|+|+..|=.-. T Consensus 65 ~~~~~~~~dlVittGG~g~ 83 (167) T 1uuy_A 65 KWSDVDEMDLILTLGGTGF 83 (167) T ss_dssp HHHHTSCCSEEEEESCCSS T ss_pred HHHHHCCCCEEEEECCCCC T ss_conf 8877515425661036666 No 143 >1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1 Probab=21.60 E-value=35 Score=13.76 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=44.8 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEE-EEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 089999849997469999999997598487711102456576899-99996287778989999999999987 Q T0613 5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFM-RVVFNAAAKVIPLASLRTGFGVIAAK 75 (287) Q Consensus 5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfM-ri~~~~~~~~~~~~~L~~al~~la~~ 75 (287) .|-+.++|++..+.+..|..++.++-.+-..++... --+|.|.. ++.+.. -+.+++.+-++++.+. T Consensus 36 ~y~fKvIG~~~~~~~~~V~~I~~~h~~~~~~v~~k~-Ss~GKYvSvTv~i~a----~S~eqv~~iY~~L~~~ 102 (109) T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKP-SSKGNYHSVSITINA----THIEQVETLYEELGKI 102 (109) T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEE-SSCSSEEEEEEEECC----SSHHHHHHHHHHHSCS T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEC-CCCCCEEEEEEEEEE----CCHHHHHHHHHHHHCC T ss_conf 775899998885589999999998678866523204-899838999999998----8999999999998439 No 144 >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Probab=21.59 E-value=35 Score=13.76 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=5.9 Q ss_pred CHHHHHHHHHH Q ss_conf 98999999999 Q T0613 61 PLASLRTGFGV 71 (287) Q Consensus 61 ~~~~L~~al~~ 71 (287) +.++|+..+.. T Consensus 31 TV~~lK~~I~~ 41 (114) T 2kdi_A 31 TIDNVKSKIQD 41 (114) T ss_dssp BHHHHHHHHHH T ss_pred CHHHHHHHHHH T ss_conf 09999999999 No 145 >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=21.20 E-value=36 Score=13.71 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=22.3 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 5753889898999999999889999999998859838 Q T0613 239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRV 275 (287) Q Consensus 239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv 275 (287) .+.|.++||+.+|++++++.+.. -+.-.||+..||+ T Consensus 21 ~l~v~~~~tV~~lK~~I~~~~gi-p~~~qrLi~~Gk~ 56 (81) T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNV-PVRQQRLLFKGKA 56 (81) T ss_dssp EEEECSSCBHHHHHHHHHHHTCC-CTTTCEEEETTEE T ss_pred EEEECCCCHHHHHHHHHHHHHCC-CHHHEEEEECCEE T ss_conf 99978967299999999998699-9436899999989 No 146 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Probab=21.16 E-value=36 Score=13.70 Aligned_cols=231 Identities=12% Similarity=0.102 Sum_probs=105.6 Q ss_pred HHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCC-HHHHHHHH-HHHHHHHCCCHHHCCCCCCCCEEEEEE Q ss_conf 9999999997598487711102456576899999962877789-89999999-999987252010001356342799980 Q T0613 19 VSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIP-LASLRTGF-GVIAAKFTMGWHMRDRETRRKVMLLVS 96 (287) Q Consensus 19 VA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~-~~~L~~al-~~la~~~~~~i~i~~~~~~~riavlvS 96 (287) .-.|...|-+..+|..-+.++.+....... .-+.. ...+ ...+.+.+ +++.+-++-.-.. +...++++..|+- T Consensus 31 L~eI~~aLLeaDV~~~vv~~ii~~Ik~~~~---~~~~~-~~~~~~~~v~k~v~e~L~~~l~~~~~~-~~~~~p~VIl~vG 105 (425) T 2ffh_A 31 LREIRRALMDADVNLEVTRDFVERVREEAL---GKQVL-ESLTPAEVILATVYEALKEALGGEARL-PVLKDRNLWFLVG 105 (425) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---TTTGG-GCSCHHHHHHHHHHHHHHHHTTSSCCC-CCCCSSEEEEEEC T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHC---CCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCEEEEEEC T ss_conf 999999999719989999999999999972---67456-657989999999999998510654334-3468973899976 Q ss_pred CCCC---CHHHHHHHHHCCCCCCEEEEEEEC--CHHHH--HH-HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 6787---779999999668999438999728--86789--99-9995699599828888887899999999998448999 Q T0613 97 QSDH---CLADILYRWRVGDLHMIPTAIVSN--HPRET--FS-GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDL 168 (287) Q Consensus 97 g~g~---~l~all~~~~~g~L~~ei~~Visn--~~~~~--~~-~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dl 168 (287) =.|+ .--+-|.++...+ +-.+.+|-++ |+.|. +. .|+..+||++..... .+....-....+.-+..+.|+ T Consensus 106 ~~G~GKTTT~aKLA~~~~~~-g~kv~lva~Dt~R~aA~eQL~~~a~~~~vp~~~~~~~-~dp~~i~~~~~~~ak~~~~Dv 183 (425) T 2ffh_A 106 LQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG-ESPESIRRRVEEKARLEARDL 183 (425) T ss_dssp CTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT-CCHHHHHHHHHHHHHHTTCSE T ss_pred CCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCC-CCHHHHHHHHHHHHHHCCCCE T ss_conf 88888120699999999865-9825688445564648999999999709841235677-787899999999976348987 Q ss_pred E--EEECCCCCCCHHHHHHCCC--CEEEECCCCC--CCCCCCCHHHHHHH--CCCEEEEEEEEEEECCCCCCC---EEEE Q ss_conf 9--9812210179789984179--9898330427--87666316999998--179085568998707888797---6400 Q T0613 169 V--VLARYMQILSDEMSARLAG--RCINIHHSFL--PGFKGAKPYHQAFD--RGVKLIGATAHYVTSALDEGP---IIDQ 237 (287) Q Consensus 169 i--vLAgym~iL~~~~~~~~~~--riiNiHpSlL--P~f~G~~~~~~a~~--~Gvk~~G~TvH~V~~~lD~Gp---II~Q 237 (287) | =.||-++.= .+.++.... ++++-|..+| .+--|.+...+|.. ..+.++|+-.--+|+.--.|. +..+ T Consensus 184 ilIDTAGR~~~d-~~lm~EL~~i~~~~~p~e~~LVlda~~gq~~~~~a~~f~~~~~i~gvIlTKlD~~akgG~alsi~~~ 262 (425) T 2ffh_A 184 ILVDTAGRLQID-EPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHV 262 (425) T ss_dssp EEEECCCCSSCC-HHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHH T ss_pred EEEECCCCCHHH-HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH T ss_conf 999678741428-9999999999986288659998424558668999999974179972476224677753299999999 Q ss_pred EEEEC-----------CCCCCHHHHHHHHHH Q ss_conf 15753-----------889898999999999 Q T0613 238 DVERI-----------SHRDTPADLVRKGRD 257 (287) Q Consensus 238 ~~v~V-----------~~~dt~e~L~~r~~~ 257 (287) .-.|| ...-+|+.+..|+.- T Consensus 263 t~~PI~fig~GE~~dDle~F~p~~~~~rilG 293 (425) T 2ffh_A 263 TGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (425) T ss_dssp HCCCEEEEECSSSGGGEEECCHHHHHHHHHT T ss_pred HCCCEEEEECCCCHHHCCCCCHHHHHHHHHC T ss_conf 6998799947997362562689999999808 No 147 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=21.01 E-value=36 Score=13.68 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC Q ss_conf 67877799999996689994389997288678-999999569959982888888789999999999844 Q T0613 97 QSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQT 164 (287) Q Consensus 97 g~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~ 164 (287) +..|.+...+-+..-....-++.-.-+|.+.. -...+++.+.....++.......+.-.++.+.|++. T Consensus 13 ~D~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~lS~~~~~~~~~~~~~i~~L~~~ 81 (137) T 1ccw_A 13 SDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137) T ss_dssp TCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 875589999999999987986997787679999999998639988977502422279899999999975 No 148 >3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A Probab=20.64 E-value=19 Score=15.47 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.6 Q ss_pred HHHHCCCCEEEEECCC Q ss_conf 9984489999981221 Q T0613 160 LIAQTHTDLVVLARYM 175 (287) Q Consensus 160 ~l~~~~~DlivLAgym 175 (287) .+.+.+||||+...++ T Consensus 66 ~i~al~PDlIi~~~~~ 81 (279) T 3g9q_A 66 KVIDLNPDLIIVWTTQ 81 (279) T ss_dssp HHHTTCCSEEEEECC- T ss_pred HHHHCCCCEEEECCCC T ss_conf 9970799999964876 No 149 >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} Probab=20.50 E-value=37 Score=13.61 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=29.3 Q ss_pred EEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH Q ss_conf 98330427876663169999981790855689987078887976400157538898989999999998 Q T0613 191 INIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDI 258 (287) Q Consensus 191 iNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~ 258 (287) +-++||.--.|+ ...-.|+..|..+...-+--..+-+..|. .-.-+ +.+++++|++++..+ T Consensus 287 i~v~p~~~e~~~--~~~~Ea~a~G~pvI~~~~~~~~e~i~~~~----~G~~~-~~~d~~~l~~~i~~l 347 (394) T 2jjm_A 287 LMLLLSEKESFG--LVLLEAMACGVPCIGTRVGGIPEVIQHGD----TGYLC-EVGDTTGVADQAIQL 347 (394) T ss_dssp EEEECCSCCSCC--HHHHHHHHTTCCEEEECCTTSTTTCCBTT----TEEEE-CTTCHHHHHHHHHHH T ss_pred HCCCCCCHHHHH--HHHHHHHHCCCCEEECCCCCHHHHHCCCC----EEEEE-CCCCHHHHHHHHHHH T ss_conf 120034313456--76799997598699947998699961797----08997-899999999999999 No 150 >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Probab=20.36 E-value=37 Score=13.59 Aligned_cols=12 Identities=0% Similarity=0.147 Sum_probs=5.6 Q ss_pred CCHHHHHHHHHH Q ss_conf 898999999999 Q T0613 60 IPLASLRTGFGV 71 (287) Q Consensus 60 ~~~~~L~~al~~ 71 (287) .+..+|++.+.+ T Consensus 52 ~TV~~LK~~I~~ 63 (125) T 1j8c_A 52 SSVQQFKEAISK 63 (125) T ss_dssp CCHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 919999999998 No 151 >1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A Probab=20.28 E-value=37 Score=13.58 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=47.6 Q ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999999987252010001356342799980678777999999966899943899972 Q T0613 64 SLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 123 (287) Q Consensus 64 ~L~~al~~la~~~~~~i~i~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Vis 123 (287) -+|.-....|.++++.=.+...+. -.+-+.+.|+...+..+++.++.|.-.++|.-+-. T Consensus 18 GFR~~~~~~A~~lgl~G~V~N~~d-G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~~ 76 (91) T 1w2i_A 18 GFRWSMQREARKLGVNGWVRNLPD-GSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEV 76 (91) T ss_dssp SHHHHHHHHHHHHTCEEEEEECTT-SCEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEEEE T ss_pred CCHHHHHHHHHHCCCEEEEEECCC-CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 874999999986397379999999-85999997399999999999966989709999999 No 152 >1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A* Probab=20.18 E-value=37 Score=13.57 Aligned_cols=141 Identities=13% Similarity=0.197 Sum_probs=59.4 Q ss_pred CCCHHHHHHHHHCCCCCCEEEEEEECCH-HH-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEE-----EE Q ss_conf 8777999999966899943899972886-78-99999956995998288888878999999999984489999-----98 Q T0613 99 DHCLADILYRWRVGDLHMIPTAIVSNHP-RE-TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLV-----VL 171 (287) Q Consensus 99 g~~l~all~~~~~g~L~~ei~~Visn~~-~~-~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dli-----vL 171 (287) |+.+.+|-..- .++..+|++... .. +..-.+++|||+...+. ..-..-++-+.++-+.++.++- +. T Consensus 255 ~~t~~ei~~~~-----~A~lnlv~~~~s~~~~A~~Lee~~GiP~i~~~~--~G~~~T~~~Lr~ia~~~g~~~~~~~E~~I 327 (491) T 1m1n_A 255 DGSISEIELTP-----KVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNF--FGPTKTIESLRAIAAKFDESIQKKCEEVI 327 (491) T ss_dssp TCCHHHHHHGG-----GCSEEEESCHHHHHHHHHHHHHHHCCCEEECCC--SSHHHHHHHHHHHHTTSCHHHHHHHHHHH T ss_pred CCCHHHHHHHC-----CCCEEEEECHHHHHHHHHHHHHHHCCCEEECCC--CCHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 98789998610-----276899846788999999999973986430577--73368999999999985885067899999 Q ss_pred ECCCCCCCH---HHHHHCCCCEEEECCCCCCCCCCCCHH---HHHHHCCCEEEEEEEEEEEC--------CCCCCCEEEE Q ss_conf 122101797---899841799898330427876663169---99998179085568998707--------8887976400 Q T0613 172 ARYMQILSD---EMSARLAGRCINIHHSFLPGFKGAKPY---HQAFDRGVKLIGATAHYVTS--------ALDEGPIIDQ 237 (287) Q Consensus 172 Agym~iL~~---~~~~~~~~riiNiHpSlLP~f~G~~~~---~~a~~~Gvk~~G~TvH~V~~--------~lD~GpII~Q 237 (287) +.++..+-+ .+-.++.||-+=+=. .|..++ .-..+-|.++.++..-|-.+ .++.|++|. T Consensus 328 ~~e~~~~~~~l~~~~~~L~GKrv~i~~------g~~~~~~l~~~l~elGmevv~~~~~~~~~~d~~~~~~~~~~~~~iv- 400 (491) T 1m1n_A 328 AKYKPEWEAVVAKYRPRLEGKRVMLYI------GGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLY- 400 (491) T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECB------SSSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHTTTTTSCTTCEEE- T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEC------CCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEE- T ss_conf 999999999999999871798367736------8511799999999879979999705787789999998679987897- Q ss_pred EEEECCCCCCHHHHHHHHHHHH Q ss_conf 1575388989899999999988 Q T0613 238 DVERISHRDTPADLVRKGRDIE 259 (287) Q Consensus 238 ~~v~V~~~dt~e~L~~r~~~~E 259 (287) .+-+..++.+.+++.. T Consensus 401 ------~d~~~~el~~~i~~~k 416 (491) T 1m1n_A 401 ------DDVTGYEFEEFVKRIK 416 (491) T ss_dssp ------ESCBHHHHHHHHHHHC T ss_pred ------CCCCHHHHHHHHHHCC T ss_conf ------3899999999998539 No 153 >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Probab=20.04 E-value=38 Score=13.55 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=10.8 Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEEEEC Q ss_conf 9806787779999999668999438999728 Q T0613 94 LVSQSDHCLADILYRWRVGDLHMIPTAIVSN 124 (287) Q Consensus 94 lvSg~g~~l~all~~~~~g~L~~ei~~Visn 124 (287) ++|.+|.-..++++....-.+......=+.| T Consensus 149 iiSQSG~~~~~i~~~~~~~giG~s~~vs~Gn 179 (288) T 2nu8_A 149 IVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179 (288) T ss_dssp EEESCHHHHHHHHHHHHHTTCCEEEEEECCS T ss_pred EEEECCHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9980226899999999974986678994587 No 154 >2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A Probab=20.04 E-value=38 Score=13.55 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=47.8 Q ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999999987252010001356342799980678777999999966899943899972 Q T0613 64 SLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 123 (287) Q Consensus 64 ~L~~al~~la~~~~~~i~i~~~~~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Vis 123 (287) -+|.-....|.++++.=.+..... -++-+.+.|....+.+++..++.|.-.+.|.-+-. T Consensus 28 GFR~~~~~~A~~lgl~G~V~N~~d-G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~ 86 (101) T 2bjd_A 28 GFRKFVQIHAIRLGIKGYAKNLPD-GSVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDY 86 (101) T ss_dssp SHHHHHHHHHHHTTCEEEEEECTT-SCEEEEEEEEHHHHHHHHHHHTTCSTTCEEEEEEE T ss_pred CCHHHHHHHHHHCCCEEEEEECCC-CEEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 847999999997498079999999-98999999699999999999975889878889999 Done!